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Sample records for arthropoda mollusca-1 mollusca-2

  1. NOTES ON SOME PREOCCUPIED NAMES IN ARTHROPODA

    Institute of Scientific and Technical Information of China (English)

    Christian F. Kammerer

    2006-01-01

    New replacement names for the preoccupied mite genera Absentia Huang, 2001 and Venilia Kuznetsov, 1979 are proposed (Huangiella nom. nov. and Kuznetsovia nom. nov. , respectively. ). Fourteen further new replacement names are proposed for additional preoccupied generic names in the Arthropoda. These names are: Vailimia nom. nov. , Millidgella nom. nov., and Nolavia nom. nov. in Araneae, Vadumasonium nom. nov. in Hymenoptera, Gridellia nom. nov.,Vanstaronia nom. nov. and Veraniella nom. nov. in Coleoptera, Poletaevega nom. nov. in Trilobita, Vandelia nom. nov.in Isopoda, Gandoa nom. nov. and Vanuachela nom. nov. in Decapoda, and Crasquinia nom. nov. , Oertlia nom. nov. ,and Soleaua nom. nov. in Ostracoda. Additionally, one new annelid replacement name, Omodeodrilus nom. nov., is proposed.

  2. Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata)

    OpenAIRE

    Battelle, Barbara-Anne; Ryan, Joseph F.; Kempler, Karen E.; Saraf, Spencer R.; Marten, Catherine E.; Warren, Wesley C; Minx, Patrick J.; Montague, Michael J.; Green, Pamela J; Schmidt, Skye A.; Fulton, Lucinda; Patel, Nipam H.; Protas, Meredith E.; Wilson, Richard K.; Porter, Megan L.

    2016-01-01

    Horseshoe crabs are xiphosuran chelicerates, the sister group to arachnids. As such, they are important for understanding the most recent common ancestor of Euchelicerata and the evolution and diversification of Arthropoda. Limulus polyphemus is the most investigated of the four extant species of horseshoe crabs, and the structure and function of its visual system have long been a major focus of studies critical for understanding the evolution of visual systems in arthropods. Likewise, studie...

  3. Diversity of cytosolic HSP70 Heat Shock Protein from decapods and their phylogenetic placement within Arthropoda.

    Science.gov (United States)

    Baringou, Stephane; Rouault, Jacques-Deric; Koken, Marcel; Hardivillier, Yann; Hurtado, Luis; Leignel, Vincent

    2016-10-10

    HSP70 and an evolutionary model of the distinct forms amongst the Arthropoda phylum. The observed differences between HSP70 groups will probably have to be linked to distinct interactions with co-chaperones or other co-factors. PMID:27374152

  4. Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).

    Science.gov (United States)

    Battelle, Barbara-Anne; Ryan, Joseph F; Kempler, Karen E; Saraf, Spencer R; Marten, Catherine E; Warren, Wesley C; Minx, Patrick J; Montague, Michael J; Green, Pamela J; Schmidt, Skye A; Fulton, Lucinda; Patel, Nipam H; Protas, Meredith E; Wilson, Richard K; Porter, Megan L

    2016-01-01

    Horseshoe crabs are xiphosuran chelicerates, the sister group to arachnids. As such, they are important for understanding the most recent common ancestor of Euchelicerata and the evolution and diversification of Arthropoda. Limulus polyphemus is the most investigated of the four extant species of horseshoe crabs, and the structure and function of its visual system have long been a major focus of studies critical for understanding the evolution of visual systems in arthropods. Likewise, studies of genes encoding Limulus opsins, the protein component of the visual pigments, are critical for understanding opsin evolution and diversification among chelicerates, where knowledge of opsins is limited, and more broadly among arthropods. In the present study, we sequenced and assembled a high quality nuclear genomic sequence of L. polyphemus and used these data to annotate the full repertoire of Limulus opsins. We conducted a detailed phylogenetic analysis of Limulus opsins, including using gene structure and synteny information to identify relationships among different opsin classes. We used our phylogeny to identify significant genomic events that shaped opsin evolution and therefore the visual system of Limulus We also describe the tissue expression patterns of the 18 opsins identified and show that transcripts encoding a number, including a peropsin, are present throughout the central nervous system. In addition to significantly extending our understanding of photosensitivity in Limulus and providing critical insight into the genomic evolution of horseshoe crab opsins, this work provides a valuable genomic resource for addressing myriad questions related to xiphosuran physiology and arthropod evolution. PMID:27189985

  5. Phylogenomic insights into the cambrian explosion, the colonization of land and the evolution of flight in arthropoda.

    Science.gov (United States)

    Wheat, Christopher W; Wahlberg, Niklas

    2013-01-01

    The timing of the origin of arthropods in relation to the Cambrian explosion is still controversial, as are the timing of other arthropod macroevolutionary events such as the colonization of land and the evolution of flight. Here we assess the power of a phylogenomic approach to shed light on these major events in the evolutionary history of life on earth. Analyzing a large phylogenomic dataset (122 taxa, 62 genes) with a Bayesian-relaxed molecular clock, we simultaneously reconstructed the phylogenetic relationships and the absolute times of divergences among the arthropods. Simulations were used to test whether our analysis could distinguish between alternative Cambrian explosion scenarios with increasing levels of autocorrelated rate variation. Our analyses support previous phylogenomic hypotheses and simulations indicate a Precambrian origin of the arthropods. Our results provide insights into the 3 independent colonizations of land by arthropods and suggest that evolution of insect wings happened much earlier than the fossil record indicates, with flight evolving during a period of increasing oxygen levels and impressively large forests. These and other findings provide a foundation for macroevolutionary and comparative genomic study of Arthropoda. PMID:22949483

  6. Estudios sobre los Entomostráceos de Colombia.V. Limnadia Orinoquiensis, una nueva especie de la familia Limnadiidae Sars, 1896 (Arthropoda, Crustacea, Conchostraca Estudios sobre los Entomostráceos de Colombia.V. Limnadia Orinoquiensis, una nueva especie de la familia Limnadiidae Sars, 1896 (Arthropoda, Crustacea, Conchostraca

    Directory of Open Access Journals (Sweden)

    Roessler Ewald W.

    1991-06-01

    Full Text Available En el presente estudio se describen rasgos morfológicos de una nueva especie colombiana del género Limnadia Brongniart, 1820, Limnadia orinoquiensis (Arthropoda, Crustacea, Conchostraca. La forma es de reproducción bisexual y típica para las aguas ácidas y oscuras de los alrededores de Puerto Inírida, Comisaria del Guainía. The present study describes morfological features of a new colombian species of the genus Limnadia Brongniart, 1820, Limnadia orinoquiensis (Arthropoda, Crustacea, Conchostraca, a species of bisexual reproduction, typical to the dark waters of temporary pools in the surroundings of Puerto Inírida, Comisaria of Guainía.

  7. Aspectos ecológicos da comunidade de Araneae (Arthropoda, Arachnida em copas da palmeira Attalea phalerata Mart. (Arecaceae no Pantanal de Poconé, Mato Grosso, Brasil

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    Leandro Dênis Battirola

    2004-01-01

    Full Text Available Seis palmeiras de Attalea phalerata foram amostradas durante a fase aquática (cheia no Pantanal de Mato Grosso (fevereiro/2001, utilizando-se a metodologia de nebulização de copas "canopy fogging". Este estudo objetivou avaliar a composição, distribuição espacial, guildas comportamentais, biomassa e sazonalidade da comunidade de Araneae em copas dessa palmeira que forma adensamentos monodominantes, típicos nessa região. Um total de 1326 aranhas foram coletadas em 99 m² de área amostral (13,4 + 8,2 indivíduos/m², representando 20 famílias, sendo Salticidae e Araneidae as mais abundantes. A biomassa total de 704 aranhas em três palmeiras correspondeu a 0.6172 mg de peso seco (0,0123+ 0,04 mg/m². Dez guildas comportamentais demonstraram a coexistência de diferentes espécies em um mesmo habitat. Representantes de Salticidae, Oonopidae e Ctenidae dominaram entre as caçadoras, e Araneidae e Dictynidae, dentre as tecelãs. A análise de distribuição espacial demonstrou que a maior abundância de aranhas ocorreu na região central da copa, provavelmente devido à quantidade de recursos disponíveis nesse local. A comparação desses resultados com aqueles obtidos durante o período de seca, demonstra diferenças sazonais influenciadas pelo pulso de inundação, principalmente com relação à composição das famílias amostradas entre os períodos de seca e cheia.Ecological aspects of a community of Araneae (Arthropoda, Arachnida at the canopy of the palm Attalea phalerata Mart. (Arecaceae in the Pantanal of Poconé, Mato Grosso, Brazil. Six palm trees of Attalea phalerata were sampled during the aquatic phase (high water in the Pantanal of Mato Grosso (February 2001 using canopy fogging. The objective was to evaluate the composition, spatial distribution, behavioural guilds, biomass and seasonality of the community of Araneae at the crowns of these palm trees, which form monospecific stands that are typical of this region. A total

  8. Phylomitogenomics of Malacostraca (Arthropoda:Crustacea)

    Institute of Scientific and Technical Information of China (English)

    SHEN Xin; TIAN Mei; YAN Binlun; CHU Kahou

    2015-01-01

    Along with the sequencing technology development and continual enthusiasm of researchers on the mitochondrial genomes, the number of metazoan mitochondrial genomes reported has a tremendous growth in the past decades. Phylomitogenomics—reconstruction of phylogenetic relationships based on mitochondrial genomic data—is now possible across large animal groups. Crustaceans in the class Malacostraca display a high diversity of body forms and include large number of ecologically and commercially important species. In this study, comprehensive and systematic analyses of the phylogenetic relationships within Malacostraca were conducted based on 86 mitochondrial genomes available from GenBank. Among 86 malacostracan mitochondrial genomes, 54 species have identical major gene arrangement (excluding tRNAs) to pancrustacean ground pattern, including six species from Stomatopoda, three species from Amphipoda, two krill, seven species from Dendrobranchiata (Decapoda), and 36 species from Pleocyemata (Decapoda). However, the other 32 mitochondrial genomes reported exhibit major gene rearrangements. Phylogenies based on Bayesian analyses of nucleotide sequences of the protein-coding genes produced a robust tree with 100%posterior probability at almost all nodes. The results indicate that Amphipoda and Isopoda cluster together (Edriophthalma) (BPP=100). Phylomitogenomic analyses strong support that Euphausiacea is nested within Decapoda, and closely related to Dendrobranchiata, which is also consistent with the evidence from developmental biology. Yet the taxonomic sampling of mitochondrial genome from Malacostraca is very biased to the order Decapoda, with no complete mitochondrial genomes reported from 11 of the 16 orders. Future researches on sequencing the mitochondrial genomes from a wide variety of malacostracans are necessary to further elucidate the phylogeny of this important group of animals. With the increase in mitochondrial genomes available, phylomitogenomics will emerge as an important component in the Tree of Life researches.

  9. Presence of Porocephalus clavatus (Arthropoda: Porocephalidae) in Peruvian Boidae snakes.

    Science.gov (United States)

    Gomez-Puerta, Luis A; Lopez-Urbina, María T; Gonzalez, Armando E

    2011-09-27

    The pentastome species, Porocephalus clavatus, has been found to infect the lungs of two species of snakes in the family Boidae family (Boa constrictor and Epicrates cenchria). The individual of B. constrictor was collected in the Amazonian rainforest of Departamento Loreto, Peru. The E. cenchria was recovered from the pet trade in Lima, Peru's capital city. A total of 22 P. clavatus were collected and examined from these two snakes. This is the first report of P. clavatus in Peru. The morphology of the parasites and the possible importance in public and animal health are discussed. PMID:21531511

  10. Morphometric characteristics in the horseshoe crab Tachypleus gigas (Arthropoda: Merostomata)

    Digital Repository Service at National Institute of Oceanography (India)

    Vijayakumar, R.; Das, S.; Chatterji, A.; Parulekar, A.H.

    , body weight were found statistically significant (p< 0.05) in the male and female horseshoe crab, Tachypleus gigas (Muller). In females, increase in weight was found to follow the cube law strictly. The carapace width grew faster at higher carapace...

  11. Keanekaragaman Arthropoda Pada Perkebunan Kopi Rakyat Di Kabupaten Pakpak Bharat

    OpenAIRE

    Sinamo, Viktor Hasudungan

    2011-01-01

    Arthropod Biodiversity Research at the Coffee Plantation in the District People's Pakpak Bharat had been conducted in March 2010-April 2010. Research in the form of this survey sampled at five heights, namely: A ≤ 700, 700

  12. One hundred millipede species in Serbia (Arthropoda: Myriapoda: Diplopoda

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    Antić D.Ž.

    2013-01-01

    Full Text Available The millipede fauna of Serbia consists of 100 species, 44 genera, 16 families and 7 orders. The most abundant are families Julidae (41 species or 41% and Polydesmidae (22 species or 22%. Of the total number, 27 species (27% are endemic to Serbia, while 18 (18% are endemic to the Balkan Peninsula. All registered species can be related to 15 zoogeographical categories. Glomeris klugii Brandt, 1833 (Glomerida: Glomeridae, Cibiniulus phlepsii (Verhoeff, 1897 (Julida: Blaniulidae, Brachyiulus bagnalli (Brolemann, 1924, Megaphyllum carniolense (Verhoeff, 1897, Typhloiulus incurvatus Verhoeff, 1899, Xestoiulus luteus (Attems, 1951 (all Julida: Julidae, and Polydesmus renschi Schubart, 1934 (Polydesmida: Polydesmidae represent new records for the diplopod fauna of Serbia. [Projekat Ministarstva nauke Republike Srbije, br. 173038

  13. LA DIVERSIDAD DE INSECTOS (ARTHROPODA: HEXAPODA EN COLOMBIA I. ENTOGNATHA A POLYNEOPTERA Diversity of Lower Insects (Arthropoda: Hexapoda in Colombia: I. Entognatha to Polyneoptera

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    GERMÁN AMAT-GARCÍA

    2011-08-01

    Full Text Available En este estudio se aborda la diversidad de hexápodos Entognatha a Polyneoptera de Colombia en términos del número de familias y especies, además del estado del arte en cada uno de los órdenes considerados e incluyendo referencias que son de relevancia para el estudio de la entomofauna colombiana. Se introduce la problemática de la valoración de la riqueza de especies de insectos en el país, desde las perspectivas histórica y del método taxonómico. Los valores en riqueza de especies, para cada grupo, se derivan de la diversidad conocida o del conocimiento de las especies formalmente descritas bajo los protocolos de la taxonomía. Para obtener la información se recurrió a literatura primaria, revisiones, monografías y catálogos impresos o en la red. Se registraron 14 órdenes, 80 familias y 1.673 especies en los grupos.The present study examines insect diversity (Entognatha and Polyneoptera in Colombia in terms of number of families, genera and species, in light of the most recent systematic data on the orders treated. We also highlight the work of active specialists and literature sources that are particularly relevant for the study of the Colombian entomofauna. We introduce the problem of evaluating species richness of insects in Colombia from historical and taxonomic-methodological perspectives. Species richness values for each group were derived from what is referred to as “known diversity” or knowledge of species that have been formally described in the taxonomic literature. Information was harvested from primary literature sources, reviews, monographs, and both online and printed catalogues. A total of 14 orders, 80 families and 1673 species are reported for the insects treated herein.

  14. LA DIVERSIDAD DE INSECTOS (ARTHROPODA: HEXAPODA) EN COLOMBIA I. ENTOGNATHA A POLYNEOPTERA Diversity of Lower Insects (Arthropoda: Hexapoda) in Colombia: I. Entognatha to Polyneoptera

    OpenAIRE

    GERMÁN AMAT-GARCÍA; FERNANDO FERNÁNDEZ

    2011-01-01

    En este estudio se aborda la diversidad de hexápodos Entognatha a Polyneoptera de Colombia en términos del número de familias y especies, además del estado del arte en cada uno de los órdenes considerados e incluyendo referencias que son de relevancia para el estudio de la entomofauna colombiana. Se introduce la problemática de la valoración de la riqueza de especies de insectos en el país, desde las perspectivas histórica y del método taxonómico. Los valores en riqueza de especies, para cada...

  15. Un módulo instruccional para un aprendizaje significativo del Phylum Arthropoda

    OpenAIRE

    Rada Ojer, Virginia

    2013-01-01

    Este trabajo final de máster quiere dar respuesta a las exigencias de la sociedad del conocimiento y de la información donde priman la inteligencia y los conocimientos y que reclaman a los centros educativos su adaptación a los nuevos tiempos para que fomenten la autonomía y la capacidad, a través de un aprendizaje significativo que perdure en el tiempo y también un cambio en los roles de docente/alumnado. Se pretende elaborar un Módulo Instruccional (MI) (es un material didáctico que con...

  16. The complete mitochondrial genome of the sea spider Nymphon gracile (Arthropoda: Pycnogonida

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    Braband Anke

    2006-11-01

    Full Text Available Abstract Background Mitochondrial genomes form units of genetic information replicating indepentently from nuclear genomes. Sequence data (most often from protein-coding genes and other features (gene order, RNA secondary structure of mitochondrial genomes are often used in phylogenetic studies of metazoan animals from population to phylum level. Pycnogonids are primarily marine arthropods, often considered closely related to chelicerates (spiders, scorpions and allies. However, due to their aberrant morphology and to controversial results from molecular studies, their phylogenetic position is still under debate. Results This is the first report of a complete mitochondrial genome sequence from a sea spider (Nymphon gracile, class Pycnogonida. Gene order derives from that of other arthropods so that presumably 10 single tRNA gene translocations, a translocation of the mitochondrial control region, and one large inversion affecting protein-coding genes must have happened in the lineage leading to Nymphon gracile. Some of the changes in gene order seem not to be common to all pycnogonids, as those were not found in a partial mitochondrial genome of another species, Endeis spinosa. Four transfer RNAs of Nymphon gracile show derivations from the usual cloverleaf secondary structure (truncation or loss of an arm. Initial phylogenetic analyses using mitochondrial protein-coding gene sequences placed Pycnogonida as sister group to Acari. However, this is in contrast to the majority of all other studies using nuclear genes and/or morphology and was not recovered in a second analysis where two long-branching acarid species were omitted. Conclusion Extensive gene rearrangement characterizes the mitochondrial genome of Nymphon gracile. At least some of the events leading to this derived gene order happened after the split of pycnogonid subtaxa. Nucleotide and amino acid frequencies show strong differences between chelicerate taxa, presumably biasing phylogenetic analyses. Thus the affinities between Pycnogonida and Acari (mites and ticks, as found in phylogenetic analyses using mitochondrial genes, may rather be due to long-branch attraction and independently derived nucleotide composition and amino acid frequency, than to a real sister group relationship.

  17. Photon activation analysis of trace elements in several kinds of invertebrate animals. 1. Arthropoda crustacea

    International Nuclear Information System (INIS)

    Quantitative analysis of trace elements was made for marine mollusca by light quantum activation method. Crustacea which is likely to be well reflecting the environment of ocean floor was used as the subjects. Various kinds of these animals including Carcinus Portunus. Palinurus, Panulirus, Squilla etc. were collected from the sea off Japan to determine the concentrations of 15 kinds of elements in the gills, muscles, head/thorax region and viceraneous organs. The concentration of As was found markedly high in either of gills, muscles or viceraneous organs of Palinurus taken from the sea near Okinawa. It was found that there are no difference in the concentrations of As, Fe, Mn and Pb among the species studied and Fe, Mn and Pb were detected at high levels in the gills of Carcinus, whereas the Fe and Mn concentrations in the gills of Palinurus were considerably lower than other species tested. Thus, the element concentration was different among the regions studied and also species. (M.N.)

  18. The centipedes (Arthropoda, Myriapoda, Chilopoda) from Colombia: Part I. Scutigeromorpha and Scolopendromorpha.

    Science.gov (United States)

    Chagas, Amazonas; Chaparro, Elisa; Jiménez, Sebastián Galvis; Triana, Hernán Darío Triana; Flórez D, Eduardo; Seoane, José Carlos Sícoli

    2014-01-01

    This study presents an updated list of centipedes of the orders Scutigeromorpha and Scolopendromorpha from Colombia based on data from the literature, the World Catalogue of Centipedes (CHILOBASE), and specimens examined in museum collections. Four families, nine genera, 37 species and four subspecies are listed. One species belongs to Scutigeromorpha, and 36 species and four subspecies to Scolopendromorpha. Eleven species and four subspecies of scolopendromorphs are recorded for the first time from Colombia. Newportia Gervais, 1847 is the most diverse genus with 12 species and three subspecies. Six species of Scolopendromorpha are endemic. Three species-Otostigmus inermis Porat, 1876, O. scabricauda (Humbert & Saussure, 1870) and Cryptops iheringi Brölemann, 1902-are deleted from the fauna of Colombia. The Andean Región in Colombia has the most records of Scutigeromorpha and Scolopendromorpha. Maps showing the geographical distribution are given for the orders, genera, and some species. PMID:24871718

  19. Effects of understory structure on the abundance, richness and diversity of Collembola (Arthropoda) in southern Brazil.

    Science.gov (United States)

    Ribeiro-Troian, Vera R; Baldissera, Ronei; Hartz, Sandra M

    2009-01-01

    The purpose of this study was to investigate the effects of different landscape structures on the understory Collembola community. Four different forest physiognomies were compared: Pinus spp. plantation, Eucalyptus spp. plantation, Araucaria angustifolia plantation, and a remaining native Araucaria forest. Three areas containing two sampling units (25 mx2 m each) were selected in each forest physiognomy. Understory Collembola collection was done with a 1x1 m canvas sheet held horizontally below the vegetation, which was beaten with a 1 m long stick, seasonally from September 2003 to August 2004. We evaluated the influence of forest physiognomies on the abundance, richness and diversity of Collembola communities. It was also verified if the habitat structure of each physiognomy was associated with the composition of the Collembola community. A total number of 4,111 individuals were collected belonging to the families Entomobrydae and Tomocerida (Entomobryomorpha), and Sminthuridae (Symphypleona), and divided in 12 morphospecies. Pinus plantation presented the highest richness, abundance and diversity of Collembola and it was associated to diverse understory vegetation. The abundance of Entomobrydae and Sminthuridae was associated to the presence of bushes, while Tomoceridae abundance was associated to the presence of trees. The habitat structure, measured through understory vegetation density and composition, plays an important role on the determination of the structure and composition of the Collembola community. PMID:19618049

  20. Temporal variations of Collembola (Arthropoda: Hexapoda in the semiarid Caatinga in northeastern Brazil

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    Aila Soares Ferreira

    2013-12-01

    Full Text Available The richness and abundance of Collembola species can be influenced by many biotic and abiotic factors, mainly humidity. The semiarid region of Brazil is dominated by Caatinga dryland vegetation which experiences distinct seasonal alterations of its physiognomy linked to regional rainfall regimes. The present study evaluated the environmental factors affecting populations of Collembola in an area of Caatinga vegetation in Northeastern Brazil during a 12-months period. Specimens were collected by active searching in ten 20 x 20 m plots, with a sampling effort of 1 hour/person/plot. A total of 1231 specimens were collected, comprising 15 morphospecies, 12 genera, and nine families. Both species richness and individual abundances demonstrated oscillations during the year, with the highest values occurring during the rainy season; rainfall was the principal predictive variable for the observed temporal oscillations. Minimum temperatures and precipitation influenced the structural composition of the Collembola. Populations of Collembola demonstrated clustered distribution during the year. The direct and indirect effects of precipitation on the quality of microhabitats and resource availability were apparently responsible for the numerical and compositional alterations of the Collembola fauna observed in the Caatinga site.

  1. La diversidad de insectos (arthropoda: hexapoda) en colombia: i.entognatha a polyneoptera

    OpenAIRE

    Amat García, Germán

    2011-01-01

    RESUMEN En este estudio se aborda la diversidad de insectos (Entognatha y Polyneoptera) de Colombia en términos del número de familias, géneros y especies, además del estado del arte en cada uno de los órdenes considerados y cuyos especialistas y fuentes bibliográficas son de gran relevancia para el estudio de la entomofauna colombiana. Se introduce la problemática de la valoración de la riqueza de especies de insectos en el país, desde las perspectivas histórica y del método taxonómico. ...

  2. LA DIVERSIDAD DE INSECTOS (ARTHROPODA: HEXAPODA EN COLOMBIA: I.ENTOGNATHA A POLYNEOPTERA

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    Amat García Germán

    2011-08-01

    Full Text Available RESUMEN En este estudio se aborda la diversidad de insectos (Entognatha y Polyneoptera de Colombia en términos del número de familias, géneros y especies, además del estado del arte en cada uno de los órdenes considerados y cuyos especialistas y fuentes bibliográficas son de gran relevancia para el estudio de la entomofauna colombiana. Se introduce la problemática de la valoración de la riqueza de especies de insectos en el país, desde las perspectivas histórica y del método taxonómico. Los valores en riqueza de especies, para cada grupo, se derivan de lo que se conoce como “diversidad conocida” o conocimiento de las especies formalmente descritas bajo los protocolos de la taxonomía. Para obtener la información se recurrió a literatura primaria, revisiones o monografías y catálogos impresos o en la red. Se registraron 18 órdenes, 80 familias y 1673 especies en los grupos considerados . Palabras clave: biodiversidad, riqueza, entomofauna, taxonomía, Colombia.

  3. LA DIVERSIDAD DE INSECTOS (ARTHROPODA: HEXAPODA) EN COLOMBIA: I.ENTOGNATHA A POLYNEOPTERA

    OpenAIRE

    Amat García Germán

    2011-01-01

    RESUMEN En este estudio se aborda la diversidad de insectos (Entognatha y Polyneoptera) de Colombia en términos del número de familias, géneros y especies, además del estado del arte en cada uno de los órdenes considerados y cuyos especialistas y fuentes bibliográficas son de gran relevancia para el estudio de la entomofauna colombiana. Se introduce la problemática de la valoración de la riqueza de especies de insectos en el país, desde las perspectivas histórica y del método taxon...

  4. Diversity of lower insects (Arthropoda: hexapoda) in Colombia: i. entognatha to polyneoptera

    International Nuclear Information System (INIS)

    The present study examines insect diversity (entognatha and polyneoptera) in Colombia in terms of number of families, genera and species, in light of the most recent systematic data on the orders treated. We also highlight the work of active specialists and literature sources that are particularly relevant for the study of the Colombian entomofauna. We introduce the problem of evaluating species richness of insects in Colombia from historical and taxonomic-methodological perspectives. Species richness values for each group were derived from what is referred to as known diversity or knowledge of species that have been formally described in the taxonomic literature. Information was harvested from primary literature sources, reviews, monographs, and both online and printed catalogues. A total of 14 orders, 80 families and 1673 species are reported for the insects treated herein.

  5. Antimicrobial effectors in the nematode Caenorhabditis elegans: an outgroup to the Arthropoda.

    Science.gov (United States)

    Dierking, Katja; Yang, Wentao; Schulenburg, Hinrich

    2016-05-26

    Nematodes and arthropods likely form the taxon Ecdysozoa. Information on antimicrobial effectors from the model nematode Caenorhabditis elegans may thus shed light on the evolutionary origin of these defences in arthropods. This nematode species possesses an extensive armory of putative antimicrobial effector proteins, such as lysozymes, caenopores (or saposin-like proteins), defensin-like peptides, caenacins and neuropeptide-like proteins, in addition to the production of reactive oxygen species and autophagy. As C. elegans is a bacterivore that lives in microbe-rich environments, some of its effector peptides and proteins likely function in both digestion of bacterial food and pathogen elimination. In this review, we provide an overview of C. elegans immune effector proteins and mechanisms. We summarize the experimental evidence of their antimicrobial function and involvement in the response to pathogen infection. We further evaluate the microbe-induced expression of effector genes using WormExp, a recently established database for C. elegans gene expression analysis. We emphasize the need for further analysis at the protein level to demonstrate an antimicrobial activity of these molecules both in vitro and in vivoThis article is part of the themed issue 'Evolutionary ecology of arthropod antimicrobial peptides'. PMID:27160601

  6. ALIEN MARINE SPECIES OF LIBYA: FIRST INVENTORY AND NEW RECORDS IN EL-KOUF NATIONAL PARK (CYRENAICA AND THE NEIGHBOURING AREAS

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    H. BAZAIRI

    2013-07-01

    Full Text Available The presence of marine alien species in El-Kouf National Park and the neighbouring areas was assessed using a compilation of available information and observations, a field survey conducted on October 2010 in the framework of the MedMPAnet project and results of further monitoring during June and September 2012. A total of 9 alien species were reported: the Rhodophyta Asparagopsis taxiformis (Delile Trevisan de Saint-Léon, the Chlorophyta Caulerpa racemosa var. cylindracea (Sonder Verlaque, Huisman & Boudouresque, the crab Percnon gibbesi (H. Milne-Edwards, 1853 and the fishes Fistularia commersonii Rüppell, 1838, Siganus luridus (Rüppell, 1829, Siganus rivulatus Forsskål, 1775, Pempheris vanicolensis Cuvier, 1831, Lagocephalus sceleratus (Gmelin, 1789 and Sphyraena flavicauda Rüppell, 1838. Several of them were until now unknown for the National Park. The list of alien marine species of Libya is updated and discussed. Until now 63 marine aliens species were recorded along the Libyan coasts. These include 3 Foraminifera, 3 Ochrophyta, 5 Rhodophyta, 5 Chlorophyta, 1 Magnoliophyta, 11 Arthropoda, 13 Mollusca, 1 Echinodermata and 21 Chordata. Among these Non Indigenous Species, 43 are known as established along the Libyan coast including 8 invasive, 11 casual, 6 questionable, 3 cryptogenic and 1 unknown. An in-depth study of the marine organisms would substantially increase the number of alien species occurring in Libya. Monitoring of marine assemblages of MPAs is a valuable opportunity to go further into the knowledge of native and introduced species.

  7. The complete mitochondrial genome of the scab mite Psoroptes cuniculi (Arthropoda: Arachnida) provides insights into Acari phylogeny

    OpenAIRE

    Gu, Xiao-Bin; Liu, Guo-Hua; Song, Hui-Qun; Liu, Tian-Yu; Yang, Guang-You; Zhu, Xing-Quan

    2014-01-01

    Background Limited available sequence information has greatly impeded population genetics, phylogenetics and systematics studies in the subclass Acari (mites and ticks). Mitochondrial (mt) DNA is well known to provide genetic markers for investigations in these areas, but complete mt genomic data have been lacking for many Acari species. Herein, we present the complete mt genome of the scab mite Psoroptes cuniculi. Methods P. cuniculi was collected from a naturally infected New Zealand white ...

  8. Allomyrina dichotoma (Arthropoda: Insecta Larvae Confer Resistance to Obesity in Mice Fed a High-Fat Diet

    Directory of Open Access Journals (Sweden)

    Young-Il Yoon

    2015-03-01

    Full Text Available To clarify the anti-obesity effect of Allomyrina dichotoma larvae (ADL, we previously reported that ADL block adipocyte differentiation on 3T3-L1 cell lines through downregulation of transcription factors, such as peroxisome proliferator-activated receptor-γ (PPARG and CCAAT/enhancer binding protein-α (CEBPA. In this study, we tested whether ADL prevent obesity in mice fed a high-fat diet (HFD and further investigated the mechanism underlying the effects of ADL. All mice were maintained on a normal-fat diet (NFD for 1 week and then assigned to one of five treatment groups: (1 NFD; (2 HFD; (3 HFD and 100 mg·kg−1·day−1 ADL; (4 HFD and 3000 mg·kg−1·day−1ADL; or (5 HFD and 3000 mg·kg−1·day−1 yerba mate (Ilex paraguariensis, positive control. ADL and yerba mate were administered orally daily. Mice were fed experimental diets and body weight was monitored weekly for 6 weeks. Our results indicated that ADL reduced body weight gain, organ weight and adipose tissue volume in a dose-dependent manner. Body weight gain was approximately 22.4% lower compared to mice fed only HFD, but the difference did not reach the level of statistical significance. Real-time polymerase chain reaction (PCR analysis revealed that gene expression levels of PPARG, CEBPA and lipoprotein lipase (LPL in the epididymal fat tissue of HFD-fed mice receiving 3000 mg·kg−1·day−1 ADL were reduced by 12.4-, 25.7-, and 12.3-fold, respectively, compared to mice fed HFD only. Moreover, mice administered ADL had lower serum levels of triglycerides and leptin than HFD-fed mice that did not receive ADL. Taken together our results suggest that ADL and its constituent bioactive compounds hold potential for the treatment and prevention of obesity.

  9. Segunda adición a la lista de los crustáceos (Arthropoda: Crustacea) de aguas cubanas

    OpenAIRE

    Lalana, Rogelio; Ortiz, Manuel; Varela, Carlos

    2014-01-01

    Se presenta la segunda adición a la lista de crustáceos cubanos. Esta incluye todas las especies marinas, estuarinas y dulceacuícolas epigeas e hipogeas, que han sido citados para el país, desde la publicación de la primera adición hasta el presente. Se presentan además cinco especies de decápodos fósiles. En esta nueva versión se sigue el mismo sistema de presentación de los taxones, autores y la bibliografía correspondiente.

  10. Objavy nových druhov jaskynných článkonožcov (Arthropoda) na Slovensku

    Czech Academy of Sciences Publication Activity Database

    Papáč, V.; Mock, A.; Kováč, L.; Tajovský, Karel

    2013-01-01

    Roč. 18, č. 2 (2013), s. 91-93. ISSN 1335-213X Institutional support: RVO:60077344 Keywords : biospeleology * subterranean biology * Western Carpathians * endemic species * troglobite Subject RIV: EH - Ecology, Behaviour

  11. Role of salinity on food conversion efficiency and growth in juvenile penaeid shrimp Metapenaeus dobsoni (Crustacea/Arthropoda)

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, Brenda; Achuthankutty, C.T.

    Growth parameters of juvenile Metapenaeus dobsoni, fed with fresh squid meat were estimated in 5, 15, 25 and 35 ppt salinities for 4 weeks. Although no significant differences were noticed in food ingestion rates, higher body weight (68.9% over...

  12. Coxoplectoptera, a new fossil order of Palaeoptera (Arthropoda: Insecta), with comments on the phylogeny of the stem group of mayflies (Ephemeroptera)

    Czech Academy of Sciences Publication Activity Database

    Staniczek, A. H.; Bechly, G.; Godunko, Roman J.

    2011-01-01

    Roč. 42, č. 2 (2011), s. 101-138. ISSN 1399-560X Grant ostatní: DFG grant(DE) STA 1098/1-1 Institutional research plan: CEZ:AV0Z50070508 Keywords : Mickoleitia longimanus * Mesogenesia petersae * Mickoleitiidae Subject RIV: EG - Zoology Impact factor: 0.686, year: 2011

  13. Occurrence of sea spider Endeis mollis Carpenter (Arthropoda: Pycnogonida on the test panels submerged in Gulf of Mannar, southeast coast of India

    Directory of Open Access Journals (Sweden)

    S. Satheesh

    2012-06-01

    Full Text Available Sea spiders (Pycnogonids are exclusively marine arthropods with worldwide distribution. Pycnogonida remains one of the poorly investigated groups encountered in fouling communities. In the present study, distribution pycnogonid species Endeis mollis associated with the fouling community developed on test panels submerged at Kudankulam coast, Gulf of Mannar was studied for a period of two years. Throughout the period of investigation, Endeis mollis was observed on the test panels. A maximum of 55 individuals per square dm was observed during pre-monsoon season and a minimum of 9 individuals per square dm during monsoon season. Results of this study on seasonal distribution are of considerable interest because so little has been documented on the ecology of Pycnogonids in India.

  14. The Prevalence and Pathogenicity of the “Anchor Worm” (Lernea spp, Phylum Arthropoda within the Finfish Inhabiting the Danube Delta Area

    Directory of Open Access Journals (Sweden)

    Marius Hangan

    2013-10-01

    Full Text Available This research was conducted as a series of cross-sectional epidemiological studies. It started in the 2003 and ended in 2008, having as sample sites the Sontea-Fortuna, Gorgova-Uzlina, Dunavat-Dranov and Razim-Sinoie lakes. The aim of the research was to assess the distribution and the pathogenicity of the Lernaea copepod among the inhabiting finfish populations, in various seasons of the time period. Lernaea spp was found in ctenopharyngodon idella, cyprinus carpio, liza aurata and liza haematocheila, only in two out of the four sampled complex of lakes, Razim-Sinoie and Dunavat-Dranov. The highest prevalence of the parasite was recorded in the autumns and at the beginning of the springs. The frequency of the parasitism was highest in the C. idella captured in the Dunavat-Dranov complex lakes (86.29%. The lesions caused by the copepod were mainly localized on the eye balls, the tegmentum and on the fins, where hemorrhagic and proliferative processes, as well as an overall increase in tegmentum mucus secretion, were noticed.

  15. The Prevalence and Pathogenicity of the “Anchor Worm” (Lernea spp, Phylum Arthropoda) within the Finfish Inhabiting the Danube Delta Area

    OpenAIRE

    Marius Hangan; Laura Daniela Urdes; Daniela Ianitchi

    2013-01-01

    This research was conducted as a series of cross-sectional epidemiological studies. It started in the 2003 and ended in 2008, having as sample sites the Sontea-Fortuna, Gorgova-Uzlina, Dunavat-Dranov and Razim-Sinoie lakes. The aim of the research was to assess the distribution and the pathogenicity of the Lernaea copepod among the inhabiting finfish populations, in various seasons of the time period. Lernaea spp was found in ctenopharyngodon idella, cyprinus carpio, liza aurata and liza haem...

  16. SURVAI VECTOR DAN RESERVOIR PENYAKIT ZOONOTIK YANG DITULARKAN OLEH ARTHROPODA DI DESA BASI, KECAMATAN DONDO KABUPATEN BUOL — TOLITOLI, SULAWESI TENGAH, INDONESIA

    Directory of Open Access Journals (Sweden)

    Tuti R. Hadi

    2012-09-01

    Full Text Available An ecological survey was conducted in Central Sulawesi to obtain information on the distri­bution of reservoir hosts and vectors of arthropod-borne zoonotic diseases. Serological test were done from human sera collected in the area against arboviral and rickettsial antigens. Three species of Culex mosquitoes known as potential vectors of arbovirosis: Cx. bitaeni-orhynchus, Cx. gelidus and Cx. tritaeniorhynchus, were found in the area surveyed. A known vector of scrub typhus, Leptotrombidium (L. deliensis, was also found in that area. Suspected reservoirs of arthropod-borne zoonosis in the area surveyed were chickens, ducks, cows, horses, monkeys and rats. The prevalence of antibodies against arbovirus group A antigens ( Chikungunya, Getah and Sindbis was 34,06%, 28,5% and 4,39%, against arbovirus group B antigen (Japanese Encepha­litis was 93,4% and none against Rickettsia tsutsugamushi and Rickettsia typhy antigens, out of 91 human sera examined. Antibodies were found in animal sera examined against arbovirus group A and arbovirus group B antigens in a variation of 11,8% — 100%. The prevalence of antibodies against R. tsutsugamushi antigen was 22,7% out of 22 rat sera examined.

  17. Características de las comunidades de diptera (arthropoda: insecta) y su relación con el pasaje en la altillanura de la orinoquia (meta, colombia)

    OpenAIRE

    Niño Arias, Larry; Amat García, Germán; Aguilera, Elizabeth

    2011-01-01

    La fauna dipterológica fue muestreada en la cuenca de sedimentación de la Orinoquia ondulada y bien drenada, correspondiente a la Altillanura estructural erosional con bajo grado de disección, ubicada cerca al caserío de Puerto Guadalupe en el municipio de Puerto López (Meta, Colombia). Se describen las comunidades caracterizando la composición, la abundancia, la diversidad y algunos aspectos estacionales, con respecto al paisaje, de las familias y los gremios tróficos larvales empleando proc...

  18. Características de las comunidades de Diptera (Arthropoda: Insecta y su relación con el pasaje en la altillanura de la Orinoquia (Meta, Colombia

    Directory of Open Access Journals (Sweden)

    Niño Arias Larry

    2005-07-01

    Full Text Available La fauna dipterológica fue muestreada en la cuenca de sedimentación de la Orinoquia ondulada y bien drenada, correspondiente a la Altillanura estructural erosional con bajo grado de disección, ubicada cerca al caserío de Puerto Guadalupe en el municipio de Puerto López (Meta, Colombia. Se describen las comunidades caracterizando la composición, la abundancia, la diversidad y algunos aspectos estacionales, con respecto al paisaje, de las familias y los gremios tróficos larvales empleando procedimientos de estadística descriptiva y geoestadística junto con estimaciones Kriging.

  19. Características de las comunidades de Diptera (Arthropoda: Insecta) y su relación con el pasaje en la altillanura de la Orinoquia (Meta, Colombia)

    OpenAIRE

    Niño Arias Larry; Amat García Germán; Aguilera Elizabeth

    2005-01-01

    La fauna dipterológica fue muestreada en la cuenca de sedimentación de la Orinoquia ondulada y bien drenada, correspondiente a la Altillanura estructural erosional con bajo grado de disección, ubicada cerca al caserío de Puerto Guadalupe en el municipio de Puerto López (Meta, Colombia). Se describen las comunidades caracterizando la composición, la abundancia, la diversidad y algunos aspectos estacionales, con respecto al paisaje, de las familias y los gremios tróficos larvales empleando proc...

  20. SURVAI VECTOR DAN RESERVOIR PENYAKIT ZOONOTIK YANG DITULARKAN OLEH ARTHROPODA DI DESA BASI, KECAMATAN DONDO KABUPATEN BUOL — TOLITOLI, SULAWESI TENGAH, INDONESIA

    OpenAIRE

    Tuti R. Hadi; Sustriayu Nalim

    2012-01-01

    An ecological survey was conducted in Central Sulawesi to obtain information on the distri­bution of reservoir hosts and vectors of arthropod-borne zoonotic diseases. Serological test were done from human sera collected in the area against arboviral and rickettsial antigens. Three species of Culex mosquitoes known as potential vectors of arbovirosis: Cx. bitaeni-orhynchus, Cx. gelidus and Cx. tritaeniorhynchus, were found in the area surveyed. A known vector of scrub typhus, Leptotrombidium (...

  1. La percepción de diplopoda (Arthropoda, Myriapoda por los habitantes del poblado de Pedra Branca, Santa Teresinha, Bahía, Brasil The perception of diplopoda (Arthropoda, Myriapoda by the inhabitants of the country of Pedra Branca Santa Teresinha, Bahía, Brasil

    Directory of Open Access Journals (Sweden)

    Costa Neto Eraldo M.

    2007-08-01

    Full Text Available Este artículo registra las concepciones, los conocimientos y los comportamientos que los habitantes del poblado de Pedra Branca, en el estado de Bahía, poseen sobre los artrópodos de la clase Diplopoda. Los datos fueron obtenidos desde febrero hasta junio de 2005 a través de entrevistas abiertas y semiestructuradas realizadas con 28 individuos de ambos sexos, con edades que variaron de 13 a 86 años. Se registraron los conocimientos tradicionales relacionados con taxonomía, biología, hábitat, ecología, estacionalidad y comportamiento. Los resultados muestran que los diplópodos son clasificados como “insectos”. La característica de enrollar el cuerpo fue la más comentada, así como el hecho de que la mayoría de los individuos cree que estos animales son ponzoñosos. En general, el conocimiento zoológico tradicional que los pobladores de Pedra Branca tienen acerca de los diplópodos se mostró coherente con el conocimiento académicoThis paper deals with the conceptions, knowledge and attitudes of the inhabitants of the county of Pedra Branca, Bahia State, on the arthropods of the class Diplopoda. Data were collected from February to June 2005 by means of openended interviews carried out with 28 individuals, which ages ranged from 13 to 86 years old. It was recorded some traditional knowledge regarding the following items: taxonomy, biology, habitat, ecology, seasonality, and behavior. Results show that the diplopods are classified as “insects”. The characteristic of coiling the body was the most commented, as well as the fact that these animals are considered as “poisonous”. In general, the traditional zoological knowledge of Pedra Branca’s inhabitants concerning the diplopods is coherent with the academic knowledge.

  2. THE PERCEPTION OF DIPLOPODA (ARTHROPODA, MYRIAPODA BY THE INHABITANTS OF THE COUNTY OF PEDRA BRANCA, SANTA TERESINHA, BAHIA, BRAZIL La percepción de diplopoda (Arthropoda, Myriapoda por los habitantes del poblado de Pedra Branca, Santa Teresinha, Bahía, Brasil

    Directory of Open Access Journals (Sweden)

    ERALDO M COSTA NETO

    2007-11-01

    Full Text Available This paper deals with the conceptions, knowledge and attitudes of the inhabitants of the county of Pedra Branca, Bahia State, on the arthropods of the class Diplopoda. Data were collected from February to June 2005 by means of openended interviews carried out with 28 individuals, which ages ranged from 13 to 86 years old. It was recorded some traditional knowledge regarding the following items: taxonomy, biology, habitat, ecology, seasonality, and behavior. Results show that the diplopods are classified as “insects”. The characteristic of coiling the body was the most commented, as well as the fact that these animals are considered as “poisonous”. In general, the traditional zoological knowledge of Pedra Branca’s inhabitants concerning the diplopods is coherent with the academic knowledge.Este artículo registra las concepciones, los conocimientos y los comportamientos que los habitantes del poblado de Pedra Branca, en el estado de Bahía, poseen sobre los artrópodos de la clase Diplopoda. Los datos fueron obtenidos desde febrero hasta junio de 2005 a través de entrevistas abiertas y semiestructuradas realizadas con 28 individuos de ambos sexos, con edades que variaron de 13 a 86 años. Se registraron los conocimientos tradicionales relacionados con taxonomía, biología, hábitat, ecología, estacionalidad y comportamiento. Los resultados muestran que los diplópodos son clasificados como “insectos”. La característica de enrollar el cuerpo fue la más comentada, así como el hecho de que la mayoría de los individuos cree que estos animales son ponzoñosos. En general, el conocimiento zoológico tradicional que los pobladores de Pedra Branca tienen acerca de los diplópodos se mostró coherente con el conocimiento académico.

  3. ONTOGENESIS OF TUZOIA BISPINOSA (ARTHROPODA) FROM THE MIDDLE CAMBRIAN KAILI BIOTA, GUIZHOU, CHINA%贵州中寒武世凯里生物群双刺吐卓虫(Tuzoia bispinose)个体发育的研究

    Institute of Scientific and Technical Information of China (English)

    姚路; 彭进; 傅晓平; 赵元龙

    2009-01-01

    大型双瓣壳节肢动物是凯里生物群中重要组成部分,其中吐卓虫属(Tuzoia)最为常见,化石标本达200多件.吐卓虫常见于全球早、中寒武世地层,地理分布广泛,在地层对比和古环境研究中具有重要意义.文章运用数理统计和对比研究的方法,详细检测130多块双刺吐卓虫(Tuzoia bispinosa Yuan and Zhao,1999)化石标本,发现明显可分为幼年期、青年期和成年期3个不同的生长发育阶段.文中探讨双刺吐卓虫的个体发育,确认先前建立的凯里生物群中Tuzoia的2个种:Tuzoia bispinose和T.magna,应为Tuzoia bispinose一种.

  4. Новые находки Argiope bruennichi Scop. (Arthropoda, Aranei) в Беларуси

    OpenAIRE

    Петрусевич, М. И.; Радевич, В. С.; Гричик, В. В.

    2008-01-01

    There were exposed new places of habitat of Argiope bruennichi: Brest region and Minsk district. Natural habitat broads in the conditions of the climatic changes in the last decades. = Выявлены новые места обитания Argiope bruennichi. Расширение его ареала может быть обусловлено климатическими изменениями последних десятилетий.

  5. Efecto de residuos de leguminosas sobre estadios de una población de lombrices (Eisenia foetida y caracterización biológica del humus obtenido

    Directory of Open Access Journals (Sweden)

    Eneida Vilches

    2000-01-01

    significativa entre el tipo de alimento y los estadios analizados siempre a favor del juvenil. La mejor representación de organismos presentes en la fauna pertenecen a las clases: Chilopoda, Isopoda e Insecta del phylum Arthropoda

  6. CORRELATION STUDY ON MOLLUSCA, ARTHROPODA AND CHORDATA COMMUNITIES IN LONGTIAN CAVE AND ZHENGJIA BIG CAVE IN GUIZHOU%贵州龙天洞和郑家大洞内软体动物、节肢动物和脊索动物群落的比较研究

    Institute of Scientific and Technical Information of China (English)

    黎道洪; 罗蓉; 宋锡章

    1999-01-01

    对龙天洞和郑家大洞内的软体动物、节肢动物和脊索动物进行了观察和采集,两洞共获标本847个,隶属3门6纲15目28种.并对两洞的动物群落进行了研究,结果多样性指数最高的是群落A(2.2308),而最低是群落F(0.9404);相似性指数最高是群落E-F(0.6363),而最低是群落D-F(0.1552).此外,还对两洞的动物季节数量动态和空间分布进行了分析.

  7. COMPARATIVE RESEARCH ON MOLLUSCA, ARTHROPODA AND CHORDATA COMMUNITIES IN XIA CAVE, FEILONG CAVE AND BAILONG CAVE IN XINGYI%兴义下洞、白龙洞、飞龙洞内软体动物、节肢动物和脊索动物群落的比较研究

    Institute of Scientific and Technical Information of China (English)

    郭微; 黎道洪; 杨卫成

    2006-01-01

    对贵州兴义市下洞、白龙洞、飞龙洞内的软体动物、节肢动物和脊索动物进行了观察和采集,3个洞穴共获标本(含统计数)4000余号,隶属3门8纲18目40科50属71种.并对3洞的动物群落进行了研究,结果表明:多样性指数最高的是群落A2(2.7423),而最低是群落C1(0.3953);相似性指数最高是群落A1-A3(0.9888),而最低是群落C1-B2(0.1936).

  8. 贵州和尚洞不同光带内软体动物、节肢动物和脊索动物的多样性及分布研究%STUDY ON THE DIVERSITY AND DISTRIBUTION OF MOLLUSC, ARTHROPODA, AND CHORDATA IN HUOSHANG CAVE OF GUIZHOU PROVINCE

    Institute of Scientific and Technical Information of China (English)

    黎道洪; 罗蓉

    1999-01-01

    对贵州和尚洞内的软体动物、节肢动物和脊索动物进行了观察和采集,共获标本350号,隶属3门5纲13目19科.研究了不同光带内洞穴动物的多样性.结果表明,洞内物种丰富,多样性和均匀度指数最高均在有光带,其指数分别为3.5511、2.2964和0.7799;优势度指数在黑暗带最高(0.3756);相似性指数最高在弱光带与黑暗带之间(0.6338).此外,还对洞穴动物的分布进行了分析.

  9. Anchialine fauna of the Corona lava tunnel (Lanzarote,Canary Islands): diversity, endemism and distribution

    DEFF Research Database (Denmark)

    Martínez, Alexandro; Palmero, A M; Brito, M C; Núñez, J; Worsaae, Katrine

    2009-01-01

    A checklist of 77 taxa recorded from the anchialine sections of the Corona lava tube is provided, including information on habitats, faunal distribution within the cave, and main references. Of the nine major groups recorded, Crustacea shows the highest diversity with 31 species and the highest d...... Mollusca, 2 Nematoda, 2 Cnidaria, and 1 species each of Priapula, Ctenophora, Echinodermata and Echiura, are known from the lava tube, of which only 1 mollusc is endemic to this cave system....

  10. ПЕРИОДИЧНОСТЬ ПИЩЕВОЙ АКТИВНОСТИ КАМЧАТСКОГО КРАБА PARALITHODES CAMTSCHATICUS (ARTHROPODA, DECAPODA) В БАРЕНЦЕВОМ МОРЕ

    OpenAIRE

    Манушин, Игорь

    2012-01-01

    В работе приведены результаты исследований ритмичности питания камчатского краба в Баренцевом море. Показано наличие циркадной и месячной периодичности в его пищевой активности. Указанная периодичность связывается с приливно-отливным циклом. Значения общего индекса наполнения желудков краба следуют за значениями высоты прилива с небольшим отставанием. Наибольшие среднесуточные уловы ловушек, отражающие высокую пищевую активность краба, отмечены во время сизигийных приливов....

  11. Stomach Contents of the Catfish (Clarias gariepinus Burchell, 1822) in the River Asi (Turkey)

    OpenAIRE

    YALÇIN, Şükran

    2001-01-01

    Natural food items of catfish (Clarias gariepinus Burchell, 1822) were investigated in the River Asi from September 1996 to October 1998. Analyses of stomach contents showed that the catfish feed basically on Arthropoda, mostly Diptera larvae, and on plant materials to a considerable extent. A successful filter feeding was observed, especially during the summer period.

  12. The evolutionary origin of insect telomeric repeats, (TTAGG)(n)

    Czech Academy of Sciences Publication Activity Database

    Vítková, Magda; Král, J.; Traut, W.; Zrzavý, Jan; Marec, František

    2005-01-01

    Roč. 13, č. 2 (2005), s. 145-156. ISSN 0967-3849 R&D Projects: GA ČR(CZ) GA206/00/0750; GA AV ČR(CZ) KSK5052113 Institutional research plan: CEZ:AV0Z50070508 Keywords : Arthropoda * chromosomes * Onychophora Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.007, year: 2005

  13. Two new families (Acari: Alicorhagiidae and Platyhelminthes: Prorhynchidae) reported for the Hungarian fauna From leaf litter in the Bükk Mountains

    OpenAIRE

    Pfliegler, W.P.; Bolton, S.J.

    2016-01-01

    Two new members of the Hungarian fauna are reported, both of them were collected in beech forest leaf litter in the Bükk Mountains, North-East Hungary: Alicorhagia fragilis Berlese, 1910 (Arthropoda: Arachnida: Acari: Sarcopti-formes: Endeostigmata: Alicorhagiidae) and Geocentrophora baltica (Kennel, 1883) (Platyhelminthes: Rhabditophora: Trepaxonemata: Amplimatricata: 'Lecithoepitheliata': Prorhynchida: Prorhynchidae). The families Alicorhagiidae and Prorhynchidae both represent...

  14. INSECTS AND THEIR CHEMICAL WEAPONRY: GREAT POTENTIAL AND NEW DISCOVERIES FROM THE ORDER PHASMATODEA

    Science.gov (United States)

    With over 1,000,000 species of insects known, Class Insecta (Phyllum Arthropoda), the largest and most diverse group of organisms, is one of the least explored in natural product drug discovery (Dossey, A. T., Nat. Prod Rep. 2010, 27, 1737–1757). Over the past five our research stick insect chemical...

  15. Screening and identification of novel cytochrome P450s in ticks

    Science.gov (United States)

    Cytochrome P450s are the major phase I drug metabolizing enzymes found in most species, including those belonging to the phylum Arthropoda. Much of the work within the area of xenobiotic metabolism in this phylum has centered on mosquito species such as Anopheles gambiae due to their role as vectors...

  16. PCR survey of 50 introns in animals: cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla

    OpenAIRE

    Gérard, Karin; Guilloton, Edith; Arnaud-Haond, Sophie; Aurelle, Didier; Bastrop, Ralf; Chevaldonné, Pierre; Derycke, Sophie; Hanel, Reinhold; Lapègue, Sylvie; Lejeusne, Christopher; Mousset, Sylvain; Ramsak, Andreja; Remerie, Thomas; Viard, Frédérique; Feral, Jean-Pierre

    2013-01-01

    Exon Primed Intron Crossing (EPIC) markers provide molecular tools that are susceptible to be variable within species while remaining amplifiable by PCR using potentially universal primers. In this study we tested the possibility of obtaining PCR products from 50 EPIC markers on 23 species belonging to seven different phyla (Porifera, Cnidaria, Arthropoda, Nematoda, Mollusca, Annelida, Echinodermata) using 70 new primer pairs. A previous study had identified and tested those loci in a dozen s...

  17. Experimental transmission of a microsporidian pathogen from mosquitoes to an alternate copepod host.

    OpenAIRE

    Andreadis, T G

    1985-01-01

    Meiospores of a microsporidian parasite Amblyospora sp. (Protozoa: Microspora) from larval Aedes cantator mosquitoes were directly infectious to an alternate copepod host, Acanthocyclops vernalis (Arthropoda: Crustacea). Infections ranged from 6.7% to 60.0% in laboratory tests when meiospores and copepods were maintained together for 10-30 days in filtered water from the breeding site or in a balanced salt solution. Pathogen development takes place within host adipose tissue and is fatal to t...

  18. Coleopteran and Lepidopteran Hosts of the Entomopathogenic Genus Cordyceps sensu lato

    OpenAIRE

    Bhushan Shrestha; Eiji Tanaka; Min Woo Hyun; Jae-Gu Han; Chang Sun Kim; Jong Won Jo; Sang-Kuk Han; Junsang Oh; Gi-Ho Sung

    2016-01-01

    Entomophthoralean and ascomycetous fungi are the two major groups known to parasitize arthropods in almost every terrestrial habitat of the earth. Within Ascomycota, Cordyceps sensu lato is a large genus with more than 400 spp. described on numerous orders of Arthropoda. Among the hosts of Cordyceps, Coleoptera and Lepidoptera are the two major orders. Out of the estimated 200 Cordyceps spp. recorded on coleopteran and lepidopteran hosts, we have documented 92 spp. based on the available info...

  19. A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae

    OpenAIRE

    Dermauw, W.; Osborne, E.J.; Clark, R.M.; Grbić, M.; Tirry, L.; Van Leeuwen, T

    2013-01-01

    Background: The ABC (ATP-binding cassette) gene superfamily is widespread across all living species. The majority of ABC genes encode ABC transporters, which are membrane-spanning proteins capable of transferring substrates across biological membranes by hydrolyzing ATP. Although ABC transporters have often been associated with resistance to drugs and toxic compounds, within the Arthropoda ABC gene families have only been characterized in detail in several insects and a crustacean. In this st...

  20. Functional and ecological consequences of saprotrophic fungus–grazer interactions

    OpenAIRE

    Crowther, Thomas W.; Boddy, Lynne; T. Hefin Jones

    2012-01-01

    Saprotrophic fungi are key regulators of nutrient cycling in terrestrial ecosystems. They are the primary agents of plant litter decomposition and their hyphal networks, which grow throughout the soil–litter interface, represent highly dynamic channels through which nutrients are readily distributed. By ingesting hyphae and dispersing spores, soil invertebrates, including Arthropoda, Oligochaetae and Nematoda, influence fungal-mediated nutrient distribution within soil. Fungal physiological r...

  1. Taxonomy Icon Data: red flour beetle [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available red flour beetle Tribolium castaneum Arthropoda Tribolium_castaneum_L.png Tribolium..._castaneum_NL.png Tribolium_castaneum_S.png Tribolium_castaneum_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Triboliu...m+castaneum&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Tribolium+castaneum&t=N...L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Tribolium+castaneum&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Tribolium+castaneum&t=NS ...

  2. Taxonomy Icon Data: pea aphid [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available pea aphid Acyrthosiphon pisum Arthropoda Acyrthosiphon_pisum_L.png Acyrthosiphon_pisum_NL.png Acyrthosip...hon_pisum_S.png Acyrthosiphon_pisum_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Acyrthosip...hon+pisum&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Acyrthosiphon+pisum&t=NL http:...//biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Acyrthosiphon+pisum&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Acyrthosiphon+pisum&t=NS ...

  3. Analysis of the Plankton in the Area around the Cape Maslen Nos, Bulgaria: Possibilities for Cultivation of Mediterranean Mussels (Mytilus galloprovincialis)

    OpenAIRE

    Galin Y. Nikolov; Alexander P. Atanasov; Dian M. Georgiev; Evgeni G. Raichev

    2010-01-01

    The aim of the study was to establish the species taxonomic composition and thequantitative characteristics of plankton in the Cape Maslen Nos area. Representatives of theProtozoa, Rotatoria, Annelida, Mollusca and Arthropoda predominated in the compositionstructure of zooplankton whereas members of Bacillariophyta, Chrysophyta, Dinophyta,Cyanophyta, Euglenophyta in that of phytoplankton. The comparative analysis of phytoplanktondata shows that the highest mean biomass values were 24.76 – 33....

  4. Land snails (Mollusca: Gastropoda) of India: status, threats and conservation strategies

    OpenAIRE

    Sen, S.; Ravikanth, G; N.A. Aravind

    2012-01-01

    Land snails form an important component in the forest ecosystem. In terms of number of species, the phylum Mollusca, to which land snails belong, is the largest phylum after Arthropoda. Mollusca provide unique ecosystem services including recycling of nutrients and they provide a prey base for small mammals, birds, snakes and other reptiles. However, land snails have the largest number of documented extinctions, compared to any other taxa. Till date 1,129 species of land snails are recorde...

  5. APPLICATION OF NATURAL POLLINATOR BOMBUS TERRESTRIS IN CULTIVATION OF THE ‘BIO’ VEGETABLES

    OpenAIRE

    Erjola Keci; Artan Trebicka; Leomira Osmani (Lataj)

    2012-01-01

    In this study is presented the pollination activity of the Bombus terrestris L. Type: Arthropoda, Class: Insecta, Order: Hymenoptera, Family: Apidae, Genus: Bombus Latr. The aim is presentation of the evidences in the impact on the efficiency and qualitative improvement of the plant cucumber Cucurum sativum and the red pepper plant Capsicum annuum in greenhouses. The experiments conducted during the period 2009-2010 in the Germenji (Lushnje) related to the cucumber plant and the red pepper pl...

  6. Salida de campo por Valladolid el 2 de abril de 1953

    OpenAIRE

    Valverde Gómez, José Antonio, 1926-2003

    2008-01-01

    Salida de campo por Valladolid capital el 2 de abril de 1953, de la que se anotaron observaciones sobre gasterópodos (Mollusca: Gastropoda), los órdenes Coleoptera e Hymenoptera de insectos (Arthropoda: Hexapoda: Insecta), hallados en estómagos de las siguientes aves: Burhinus oedicnemus (Alcaraván común), Lanius meridionalis (Alcaudón real, llamado L.excubitor por el autor), Milvus migrans (Milano negro) y Milvus milvus (Milano real).

  7. Taxonomy Icon Data: honey bee [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available honey bee Apis mellifera Arthropoda Apis_mellifera_L.png Apis_mellifera_NL.png Apis_mellife...ra_S.png Apis_mellifera_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Apis+mellifera&t=L h...ttp://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Apis+mellifera&t=NL http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Apis+mellife...ra&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Apis+mellifera&t=NS ...

  8. Kelimpahan makrozoobentos pada berbagai tipe sedimen di sekitar perairan Muara Sungai Maros

    OpenAIRE

    saru, amran; Supriadi; Patiung, Frenky

    2005-01-01

    Sedimentation in estuarine tends to be higher than in terrestrial. Macrozoobenthos live in the bottom may experience fluctuation in abundance because of the change in sediment texture. This research was done to identify the abundance of macrozoobenthos in various sediment types in the estuary of Maros River by PCA. Three phylum were found: Arthropoda, Annelida and Nemathelminthes. Only 1 of 9 stations gave the highest abundance of macrozoobenthos. The result of PCA test revealed that Nereis s...

  9. Macrobenthic fauna community in the Middle Songkhla Lake, Southern Thailand

    OpenAIRE

    Angsupanich, S.; Charoenpornthip, M.; Siripech, A.

    2005-01-01

    A bimonthly investigation of macrobenthic fauna at the area from Ban Pak Khat to Ban Leam Chong Thanon in the Inner Songkhla Lake from February 1998 to February 1999 was undertaken to determine the species richness and abundance. A total of 7 phyla and 161 species were identified. Annelida (58 species), Arthropoda (64 species) and Mollusca (23 species) were the major phyla while Nemertea (1 species), Platyhelminthes (1 species), Cnidaria (4 species) and Chordata (10 species) were the minor. F...

  10. A list of macrofauna on the continental shelf of Gökçeada Island (northern Aegean Sea) with a new record (Gryphus vitreus Born, 1778) (Brachiopoda, Rhynchonellata) for the Turkish seas

    OpenAIRE

    Gönülal, Onur; Güreşen, Sedat Ozan

    2014-01-01

    Abstract Long-term sampling (1974-2013) of macro fauna of the Gökçeada Island (northern Aegean Sea) provided qualitative information on many taxa including Porifera, Cnidaria Mollusca, Arthropoda, Brachiopoda, Bryozoa, Spinculida, Echinodermata, Chordata. Gryphus vitreus (Brachiopoda) and Funiculina quadrangularis (Pallas, 1766) are the first records for the Turkish seas and the Aegean coast of Turkey, respectively. The present paper aims to describe macrofauna occurring on the continental sh...

  11. A photoactivatable green-fluorescent protein from the phylum Ctenophora

    OpenAIRE

    Haddock, Steven H. D.; Mastroianni, Nadia; Christianson, Lynne M.

    2015-01-01

    Genes for the family of green-fluorescent proteins (GFPs) have been found in more than 100 species of animals, with some species containing six or more copies producing a variety of colours. Thus far, however, these species have all been within three phyla: Cnidaria, Arthropoda and Chordata. We have discovered GFP-type fluorescent proteins in the phylum Ctenophora, the comb jellies. The ctenophore proteins share the xYG chromophore motif of all other characterized GFP-type proteins. These pro...

  12. Taxonomy Icon Data: Anopheles stephensi [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available Anopheles stephensi Anopheles stephensi Arthropoda Anopheles_stephensi_L.png Anopheles_stephen...si_NL.png Anopheles_stephensi_S.png Anopheles_stephensi_NS.png http://biosciencedbc.jp/taxonomy_i...con/icon.cgi?i=Anopheles+stephensi&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Anopheles+stephensi&...t=NL http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Anopheles+stephensi&t=S htt...p://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Anopheles+stephensi&t=NS http://togodb.biosciencedbc.jp/togodb/view/taxonomy_icon_comment_en?species_id=149 ...

  13. Macrozoobenthic Taxocoenosis in a Cultivators’ Rice Field of North West Kashmir, (J and K) India

    OpenAIRE

    Shahzadi Wufai Naw Bahaar; G. A. Bhat

    2011-01-01

    This paper presents the attempt to investigate the community composition and density of macro-zoobenthos in a cultivator’s field. The study carried out in the rice fields of north-western district Kupwara (34o02’N; 74o16E’) of Kashmir province revealed the presence of 7 taxa of macrozoobenthos belonging to Annelida, Arthropoda and Mollusca. Phylum Annelida formed the most dominant group represented by 5 taxa. Diversity calculated by employing Simpsons’ Index (D), Simpsons’ Index of Diversity ...

  14. [General overview of camel parasites and the situation in Turkey].

    Science.gov (United States)

    Azrug, Abdalla Fadlalla; Burgu, Ayşe

    2011-01-01

    The aim of this review is overview the main protozoan, arthropoda and helminthic parasites seen in camels and to evaluate the publications related to camel parasites in Turkey. In different parts of the world, trichostrongylose, mange, nasal myiasis and trypanosomiasis are the most common parasitic diseases found in camels. Hydatic cyst larval stage of E. granulosus is important both economically and in terms of public health. It is also emphasized that the records concerning parasites of the Turkish camel population, which is decreasing significantly, are extremely limited. PMID:21618196

  15. Analysis of the Plankton in the Area around the Cape Maslen Nos, Bulgaria: Possibilities for Cultivation of Mediterranean Mussels (Mytilus galloprovincialis

    Directory of Open Access Journals (Sweden)

    Galin Y. Nikolov

    2010-12-01

    Full Text Available The aim of the study was to establish the species taxonomic composition and thequantitative characteristics of plankton in the Cape Maslen Nos area. Representatives of theProtozoa, Rotatoria, Annelida, Mollusca and Arthropoda predominated in the compositionstructure of zooplankton whereas members of Bacillariophyta, Chrysophyta, Dinophyta,Cyanophyta, Euglenophyta in that of phytoplankton. The comparative analysis of phytoplanktondata shows that the highest mean biomass values were 24.76 – 33.33 g/m3 and mean biomassvalues of zooplankton – 51.43 g/m3.

  16. Benthic invertebrate fauna in the islets of Namuseom and Bukhyeongjeseom off Busan

    Directory of Open Access Journals (Sweden)

    Hosung Hwang

    2014-06-01

    Full Text Available This study was conducted to examine the benthic invertebrate fauna inhabiting in the subtidal zone in and around the islets of Namuseom and Bukhyeongjeseom off the coast of Busan by SCUBA diving in September 2013. As a consequence, it was confirmed that a total of 6 phyla, 14 classes, 20 orders, 46 families, and 73 species of zoobenthos inhabit in and around those islets. The total number of species surveyed by taxon during the study is 22 species of Arthropoda (30%, 20 species of Mollusca (27%, 15 species of Cnidaria (21%, 10 species of Echinodermata (14%, four species of Poridera (5%, and two species of Chordata.

  17. Benthic invertebrate fauna in the islets of Namuseom and Bukhyeongjeseom off Busan

    OpenAIRE

    Hosung Hwang; Jisoon Kang; In-Young Cho; Dong-Won Kang; Woon Kee Paek; Seok Hyun Lee

    2014-01-01

    This study was conducted to examine the benthic invertebrate fauna inhabiting in the subtidal zone in and around the islets of Namuseom and Bukhyeongjeseom off the coast of Busan by SCUBA diving in September 2013. As a consequence, it was confirmed that a total of 6 phyla, 14 classes, 20 orders, 46 families, and 73 species of zoobenthos inhabit in and around those islets. The total number of species surveyed by taxon during the study is 22 species of Arthropoda (30%), 20 species of Mollusca (...

  18. Lista dos Anelídeos (Annelida)

    OpenAIRE

    Paulo A V Borges

    2010-01-01

    A diversidade das minhocas (Annelida) é aqui compilada, em adição aos grupos de animais terrestres listados em detalhe noutros capítulos deste livro (Platyhelminthes, Nematoda, Mollusca, Arthropoda, Chordata). Com base na recente lista de espécies animais terrestres da Europa, projecto “Fauna Europaea” (http:// www.faunaeur.org), listam-se 21 espécies de anelí deos terrestres. É apresentada a distribuição das espécies ou subespécies nas nove ilhas dos Açores, usando-se a seguinte simbologia: ...

  19. Lista preliminar dos platelmintes e anelídeos (Platyhelminthes e Annelida) terrestres dos arquipélagos da madeira e das selvagens

    OpenAIRE

    Paulo A V Borges

    2008-01-01

    Apresenta -se uma lista preliminar dos filos Platyhelminthes e Annelida terrestres dos arquipélagos da Madeira e Selvagens. Com base na recente lista de espécies animais terrestres da Europa, projecto “Fauna Europaea” (http://www.faunaeur.org), listam -se sete espécies de platelmintes e 36 espécies de anelídeos terrestres. Em adição aos grupos de animais listados em detalhe em outros capítulos deste livro (Nematoda, Mollusca, Arthropoda, Chordata), a diversidade de dois outros grupos de anima...

  20. Zooplankton diversity across three Red Sea reefs using pyrosequencing

    KAUST Repository

    Pearman, John K.

    2014-07-30

    Coral reefs are considered among the most diverse ecosystems on Earth, yet little is known about the diversity of plankton in the surrounding water column. Moreover, few studies have utilized genomic methods to investigate zooplankton diversity in any habitat. This study investigated the diversity of taxa by sampling 45 stations around three reef systems in the central/southern Red Sea. The diversity of metazoan plankton was investigated by targeting the 18S rRNA gene and clustering OTUs at 97% sequence similarity. A total of 754 and 854 metazoan OTUs were observed in the data set for the 1380F and 1389F primer sets respectively. The phylum Arthropoda dominated both primer sets accounting for ~60% of reads followed by Cnidaria (~20%). Only about 20% of OTUs were shared between all three reef systems and the relation between geographic distance and Jaccard Similarity measures was not significant. Cluster analysis showed that there was no distinct split between reefs and stations from different reefs clustered together both for metazoans as a whole and for the phyla Arthropoda, Cnidaria and Chordata separately. This suggests that distance may not be a determining factor in the taxonomic composition of stations.

  1. Growth patterns in Onychophora (velvet worms: lack of a localised posterior proliferation zone

    Directory of Open Access Journals (Sweden)

    Landman Kerry A

    2010-11-01

    Full Text Available Abstract Background During embryonic development of segmented animals, body segments are thought to arise from the so-called "posterior growth zone" and the occurrence of this "zone" has been used to support the homology of segmentation between arthropods, annelids, and vertebrates. However, the term "posterior growth zone" is used ambiguously in the literature, mostly referring to a region of increased proliferation at the posterior end of the embryo. To determine whether such a localised posterior proliferation zone is an ancestral feature of Panarthropoda (Onychophora + Tardigrada + Arthropoda, we examined cell division patterns in embryos of Onychophora. Results Using in vivo incorporation of the DNA replication marker BrdU (5-bromo-2'-deoxyuridine and anti-phospho-histone H3 immunolabelling, we found that a localised posterior region of proliferating cells does not occur at any developmental stage in onychophoran embryos. This contrasts with a localised pattern of cell divisions at the posterior end of annelid embryos, which we used as a positive control. Based on our data, we present a mathematical model, which challenges the paradigm that a localised posterior proliferation zone is necessary for segment patterning in short germ developing arthropods. Conclusions Our findings suggest that a posterior proliferation zone was absent in the last common ancestor of Onychophora and Arthropoda. By comparing our data from Onychophora with those from annelids, arthropods, and chordates, we suggest that the occurrence of a "posterior growth zone" currently cannot be used to support the homology of segmentation between these three animal groups.

  2. The Glutathione-S-Transferase, Cytochrome P450 and Carboxyl/Cholinesterase Gene Superfamilies in Predatory Mite Metaseiulus occidentalis

    Science.gov (United States)

    Hoy, Marjorie A.

    2016-01-01

    Pesticide-resistant populations of the predatory mite Metaseiulus (= Typhlodromus or Galendromus) occidentalis (Arthropoda: Chelicerata: Acari: Phytoseiidae) have been used in the biological control of pest mites such as phytophagous Tetranychus urticae. However, the pesticide resistance mechanisms in M. occidentalis remain largely unknown. In other arthropods, members of the glutathione-S-transferase (GST), cytochrome P450 (CYP) and carboxyl/cholinesterase (CCE) gene superfamilies are involved in the diverse biological pathways such as the metabolism of xenobiotics (e.g. pesticides) in addition to hormonal and chemosensory processes. In the current study, we report the identification and initial characterization of 123 genes in the GST, CYP and CCE superfamilies in the recently sequenced M. occidentalis genome. The gene count represents a reduction of 35% compared to T. urticae. The distribution of genes in the GST and CCE superfamilies in M. occidentalis differs significantly from those of insects and resembles that of T. urticae. Specifically, we report the presence of the Mu class GSTs, and the J’ and J” clade CCEs that, within the Arthropoda, appear unique to Acari. Interestingly, the majority of CCEs in the J’ and J” clades contain a catalytic triad, suggesting that they are catalytically active. They likely represent two Acari-specific CCE clades that may participate in detoxification of xenobiotics. The current study of genes in these superfamilies provides preliminary insights into the potential molecular components that may be involved in pesticide metabolism as well as hormonal/chemosensory processes in the agriculturally important M. occidentalis. PMID:27467523

  3. Zooplankton diversity across three Red Sea reefs using pyrosequencing

    Directory of Open Access Journals (Sweden)

    John Kenneth Pearman

    2014-07-01

    Full Text Available Coral reefs are considered among the most diverse ecosystems on Earth, yet little is known about the diversity of plankton in the surrounding water column. Moreover, few studies have utilised genomic methods to investigate zooplankton diversity in any habitat. This study investigated the diversity of taxa by sampling 45 stations around three reef systems in the central/southern Red Sea. The diversity of metazoan plankton was investigated by targeting the 18S rRNA gene and clustering OTUs at 97% sequence similarity. A total of 754 and 854 metazoan OTUs were observed in the data set for the 1380F and 1389F primer sets respectively. The phylum Arthropoda dominated both primer sets accounting for ~60% of reads followed by Cnidaria (~ 20%. Only about 20% of OTUs were shared between all three reef systems and the relation between geographic distance and Jaccard Similarity measures was not significant. Cluster analysis showed that there was no distinct split between reefs and stations from different reefs clustered together both for metazoans as a whole and for the phyla Arthropoda, Cnidaria and Chordata separately. This suggests that distance may not be a determining factor in the taxonomic composition of stations.

  4. Coleopteran and Lepidopteran Hosts of the Entomopathogenic Genus Cordyceps sensu lato

    Directory of Open Access Journals (Sweden)

    Bhushan Shrestha

    2016-01-01

    Full Text Available Entomophthoralean and ascomycetous fungi are the two major groups known to parasitize arthropods in almost every terrestrial habitat of the earth. Within Ascomycota, Cordyceps sensu lato is a large genus with more than 400 spp. described on numerous orders of Arthropoda. Among the hosts of Cordyceps, Coleoptera and Lepidoptera are the two major orders. Out of the estimated 200 Cordyceps spp. recorded on coleopteran and lepidopteran hosts, we have documented 92 spp. based on the available information of their host species. Among coleopteran hosts, Scarabaeidae and Elateridae are the two major families. Similarly, among lepidopterans, Hepialidae is the largest host family. Cordyceps militaris shows the widest host range, extending to 2 orders, 13 families, and 32 spp. We hope such accumulative work will be useful as a quick reference for interested biologists, forest ecologists, biocontrol researchers, and fungal and insect taxonomists to apprehend host range and host specificities of Cordyceps fungi.

  5. Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference.

    Science.gov (United States)

    Shen, Sam H; Stauft, Charles B; Gorbatsevych, Oleksandr; Song, Yutong; Ward, Charles B; Yurovsky, Alisa; Mueller, Steffen; Futcher, Bruce; Wimmer, Eckard

    2015-04-14

    The protein synthesis machineries of two distinct phyla of the Animal kingdom, insects of Arthropoda and mammals of Chordata, have different preferences for how to best encode proteins. Nevertheless, arboviruses (arthropod-borne viruses) are capable of infecting both mammals and insects just like arboviruses that use insect vectors to infect plants. These organisms have evolved carefully balanced genomes that can efficiently use the translational machineries of different phyla, even if the phyla belong to different kingdoms. Using dengue virus as an example, we have undone the genome encoding balance and specifically shifted the encoding preference away from mammals. These mammalian-attenuated viruses grow to high titers in insect cells but low titers in mammalian cells, have dramatically increased LD50s in newborn mice, and induce high levels of protective antibodies. Recoded arboviruses with a bias toward phylum-specific expression could form the basis of a new generation of live attenuated vaccine candidates. PMID:25825721

  6. Isolation and identification of a cardioactive peptide from Tenebrio molitor and Spodoptera eridania.

    Science.gov (United States)

    Furuya, K; Liao, S; Reynolds, S E; Ota, R B; Hackett, M; Schooley, D A

    1993-12-01

    We isolated several cardioactive peptides from extracts of whole heads of the mealworm, Tenebrio molitor, and the southern armyworm, Spodoptera eridania, using a semi-isolated heart of Manduca sexta for bioassay. We have now isolated from each species the peptide with the strongest effect on rate of contraction of the heart. The peptides were identified using micro Edman sequencing and mass spectrometric methods. This cardioactive peptide has the same primary structure from both species: Pro-Phe-Cys-Asn-Ala-Phe-Thr-Gly-Cys-NH2, a cyclic nonapeptide which is identical to crustacean cardioactive peptide (CCAP) originally isolated from the shore crab, Carcinus maenas, and subsequently isolated from Locusta migratoria and Manduca sexta. This is additional evidence that CCAP has widespread occurrence in arthropoda. PMID:8129851

  7. Land snails (Mollusca: Gastropoda of India: status, threats and conservation strategies

    Directory of Open Access Journals (Sweden)

    S. Sen

    2012-09-01

    Full Text Available Land snails form an important component in the forest ecosystem. In terms of number of species, the phylum Mollusca, to which land snails belong, is the largest phylum after Arthropoda. Mollusca provide unique ecosystem services including recycling of nutrients and they provide a prey base for small mammals, birds, snakes and other reptiles. However, land snails have the largest number of documented extinctions, compared to any other taxa. Till date 1,129 species of land snails are recorded from Indian territory. But only basic information is known about their taxonomy and little is known of their population biology, ecology and their conservation status. In this paper, we briefly review status, threats and conservation strategies of land snails of India.

  8. Spatial and temporal variability of mobile macro-invertebrate assemblages associated to coralligenous habitat

    Directory of Open Access Journals (Sweden)

    R. BEDINI

    2014-07-01

    Full Text Available The study aimed to investigate patterns of spatial and temporal variability of mobile macroinvertebrate assemblages associated to coralligenous habitat. A multi-factorial sampling design was used to test the hypotheses that the structure of assemblages and their spatial and temporal variability changed in relation to substrate inclination. Moreover, macroalgae and sessile macro-invertebrates were also investigated in order to detect eventual relationship between sessile and mobile assemblages. A total of 236 mobile macro-invertebrate taxa were identified, among them 2 Platyhelminthes, 4 Sipuncula, 6 Nemertea, 27 Mollusca, 86 Annelida, 103 Arthropoda, 8 Echinodermata. Results of the study showed that mobile macro-invertebrate assemblages of coralligenous habitat were little influenced by the inclination of substrate and by the morphology of sessile organisms, as patterns of variation were different between the two assemblages. Mobile macro-invertebrate assemblages changed among sampling dates within one year period and they showed high variability at the spatial scale examined.

  9. Dynamics of faunistic complexes of parasitic organisms in the Chernobyl' NPP zone

    International Nuclear Information System (INIS)

    The results of studies made in the Chernobyl' NPP 30-km zone, which deal with estimation of species composition and number of parasites, mammals, birds, their nest inhabitants and blood-suching insects, are discussed. It is shown that parasite species variaty is higher on the contaminated territory as compared with the control one. Number of arthropoda is greater, and those of helmines and winged blood-suching insects are smaller on the contaminated territories. The main carriers of parasites among birds are starlings, larks and tomtits in contaminated regions and those are chiff-chaff and finches in the control areas. The level of nest contaminations for rodents and birds correlates with environment contamination level

  10. Differential transcription of two highly divergent gut-expressed Bm86 antigen gene homologues in the tick Rhipicephalus appendiculatus (Acari: Ixodida).

    Science.gov (United States)

    Kamau, L; Skilton, R A; Odongo, D O; Mwaura, S; Githaka, N; Kanduma, E; Obura, M; Kabiru, E; Orago, A; Musoke, A; Bishop, R P

    2011-02-01

    The transcriptional control of gene expression is not well documented in the Arthropoda. We describe transcriptional analysis of two exceptionally divergent homologues (Ra86) of the Bm86 gut antigen from Rhipicephalus appendiculatus. Bm86 forms the basis of a commercial vaccine for the control of Rhipicephalus (Boophilus) microplus. The R. appendiculatus Ra86 proteins contain 654 and 693 amino acids, with only 80% amino acid sequence identity. Reverse-transcription PCR of gut cDNA showed transcription of only one genotype in individual female ticks. PCR amplification of 3' untranslated sequences from genomic DNA indicated that both variants could be encoded within a single genome. When both variants were present, one of the two Ra86 genotypes was transcriptionally dominant. PMID:20854482

  11. APPLICATION OF NATURAL POLLINATOR BOMBUS TERRESTRIS IN CULTIVATION OF THE ‘BIO’ VEGETABLES

    Directory of Open Access Journals (Sweden)

    Erjola Keci

    2012-06-01

    Full Text Available In this study is presented the pollination activity of the Bombus terrestris L. Type: Arthropoda, Class: Insecta, Order: Hymenoptera, Family: Apidae, Genus: Bombus Latr. The aim is presentation of the evidences in the impact on the efficiency and qualitative improvement of the plant cucumber Cucurum sativum and the red pepper plant Capsicum annuum in greenhouses. The experiments conducted during the period 2009-2010 in the Germenji (Lushnje related to the cucumber plant and the red pepper plant to the Hamallaj (Durrës. Application of the pollination material in comparison with the control greenhouse, give evidences regarding to the enhancement of the fructifying proportion, with 80.3% to the cucumber plant and 84.1% to the red pepper plant with a confidence level of 97%.

  12. Quantitative distribution and functional groups of intertidal macrofaunal assemblages in Fildes Peninsula, King George Island, South Shetland Islands, Southern Ocean.

    Science.gov (United States)

    Liu, Xiaoshou; Wang, Lu; Li, Shuai; Huo, Yuanzi; He, Peimin; Zhang, Zhinan

    2015-10-15

    To evaluate spatial distribution pattern of intertidal macrofauna, quantitative investigation was performed in January to February, 2013 around Fildes Peninsula, King George Island, South Shetland Islands. A total of 34 species were identified, which were dominated by Mollusca, Annelida and Arthropoda. CLUSTER analysis showed that macrofaunal assemblages at sand-bottom sites belonged to one group, which was dominated by Lumbricillus sp. and Kidderia subquadrata. Macrofaunal assemblages at gravel-bottom sites were divided into three groups while Nacella concinna was the dominant species at most sites. The highest values of biomass and Shannon-Wiener diversity index were found in gravel sediment and the highest value of abundance was in sand sediment of eastern coast. In terms of functional group, detritivorous and planktophagous groups had the highest values of abundance and biomass, respectively. Correlation analysis showed that macrofaunal abundance and biomass had significant positive correlations with contents of sediment chlorophyll a, phaeophorbide and organic matter. PMID:26233302

  13. Sophisticated digestive systems in early arthropods.

    Science.gov (United States)

    Vannier, Jean; Liu, Jianni; Lerosey-Aubril, Rudy; Vinther, Jakob; Daley, Allison C

    2014-01-01

    Understanding the way in which animals diversified and radiated during their early evolutionary history remains one of the most captivating of scientific challenges. Integral to this is the 'Cambrian explosion', which records the rapid emergence of most animal phyla, and for which the triggering and accelerating factors, whether environmental or biological, are still unclear. Here we describe exceptionally well-preserved complex digestive organs in early arthropods from the early Cambrian of China and Greenland with functional similarities to certain modern crustaceans and trace these structures through the early evolutionary lineage of fossil arthropods. These digestive structures are assumed to have allowed for more efficient digestion and metabolism, promoting carnivory and macrophagy in early arthropods via predation or scavenging. This key innovation may have been of critical importance in the radiation and ecological success of Arthropoda, which has been the most diverse and abundant invertebrate phylum since the Cambrian. PMID:24785191

  14. Norepinephrine and octopamine: linking stress and immune function across phyla

    Directory of Open Access Journals (Sweden)

    SA Adamo

    2008-02-01

    Full Text Available In species from three widely divergent phyla (Arthropoda, Mollusca and Chordata tyrosine derivatives (norepinephrine or octopamine mediate a response to acute stress. Part of this response is a change in immune function that results in a decrease in resistance to pathogens. This decrease in disease resistance appears maladaptive. However, if the connections between norepinephrine/octopamine and immune function were maladaptive, they should have been selected against. None of the four commonly proposed adaptive explanations for acute stress-induced changes in immune function fit the available data for species from all three phyla. However, this result is probably due to the lack of information about acute stress-induced immunosuppression in invertebrates and a lack of ecologically valid studies in vertebrates. Understanding why immune function and disease resistance changes during acute stress will require greater comparative study.

  15. A study on the biodiversity of benthic invertebrates in the waters of Seogwipo, Jeju Island, Korea

    Directory of Open Access Journals (Sweden)

    In-Young Cho

    2014-03-01

    Full Text Available The biodiversity of benthic invertebrates in the intertidal and subtidal regions of Gapado, Beomseom, and Munseom islets was surveyed twice in May and September 2013 to study the state of biodiversity in Seogwipo, Jeju Island. As a result, a total of 77 species, 46 families, 25 orders, 14 classes, and nine phyla of benthic invertebrates were found. The species which were found, by taxon, consisted of the following: 26 species of Cnidaria (34%, 24 species of Mollusca (31%, seven species of Chordata (9%, six species of Arthropoda (8%, six species of Porifera (8%, five species of Echinodermata (7%, one species of Bryozoa (1%, one species of Annelida (1%, and one species of Ctenophora (1%.

  16. Carbohydrate digestion in ticks and a digestive α-L-fucosidase.

    Science.gov (United States)

    Moreti, R; Perrella, N N; Lopes, A R

    2013-10-01

    Digestive carbohydrases are present in many species of hematophagous Arthropoda, including ticks. In this work, Amblyomma cajennense (Ixodidae) midgut digestive carbohydrases were tracked with different substrates, resulting in the identification of a chitinase and an N-acetyl-β-glucosaminidase and the first description of a digestive α-L-fucosidase in ticks. α-L-fucosidases are involved in various physiological processes, and digestive α-L-fucosidases have been shown to be present in other types of organisms. Amblyomma cajennense α-L-fucosidase activity was isolated using acidic and salting-out precipitations and chromatographic steps in hydrophobic and cation-exchange columns. The specificity of the isolated activity as an α-L-fucosidase was confirmed by the hydrolysis of 4-methylumbelliferyl α-L-fucopyranoside and the natural substrate fucoidan and the inhibition by fucose and deoxyfuconojirimycin. The isolated activity of α-L-fucosidase forms oligomers with molecular mass of 140 kDa or 150 kDa as determined by gel filtration and non-reducing SDS-PAGE, respectively. This particular fucosidase has an optimum pH of 5.3, is stable even at high temperatures (stable for at least 2h at 50 °C), has a Km of 45 μM to the substrate 4-methylumbelliferyl α-L-fucopyranoside and IC 50% of 327 μM to fucose and 42 pM to deoxyfuconojirimycin. The presence of digestive fucosidases in hematophagous Arthropoda may be related to defence mechanisms against host-parasite interactions. PMID:23994295

  17. Biological risk factors in informal recyclers of Medellin city, 2005

    Directory of Open Access Journals (Sweden)

    Viviana L. Ballesteros

    2008-06-01

    Full Text Available The informal recyclers constitute a vulnerable population to problems of health by their constant exhibition to biological, chemical, physical and social risks, without protection. Objective: this work identify the biological risk facts to which the informal recyclers of the Bazaar of the Bridges of Medellin city. Methods: it was performed a Cross-sectional study. The sample was no probabilistic with 88 recyclers and the analysis unit was the informal recycler. It was applied a survey, a guide of observation of the activity of the recycler and were studied variables of person, place, time, type of biological risk facts, frequency of exhibition, felt morbidity and measures of protection. The analysis was statistical descriptive. Results: it was identified biological risk facts related to the contact with material in decomposition (96.6%, contaminated material (96.6%, animals (62.5% and arthropoda (79.5%. The se The se--curity measures to protect them from biological risk facts are used in less than 52% of recyclers; in addition, only 13.6% of the population were vaccinated, which increases the probability of becoming ill in this population. Conclusions: that the informal recyclers are exposed to different biological risk facts with little prevention, causing that population be vulnerable for the acquisition of infectious diseases.

  18. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea

    KAUST Repository

    Pearman, John K.

    2015-11-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore–offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales.

  19. Clade age and not diversification rate explains species richness among animal taxa.

    Science.gov (United States)

    McPeek, Mark A; Brown, Jonathan M

    2007-04-01

    Animal taxa show remarkable variability in species richness across phylogenetic groups. Most explanations for this disparity postulate that taxa with more species have phenotypes or ecologies that cause higher diversification rates (i.e., higher speciation rates or lower extinction rates). Here we show that clade longevity, and not diversification rate, has primarily shaped patterns of species richness across major animal clades: more diverse taxa are older and thus have had more time to accumulate species. Diversification rates calculated from 163 species-level molecular phylogenies were highly consistent within and among three major animal phyla (Arthropoda, Chordata, Mollusca) and did not correlate with species richness. Clades with higher estimated diversification rates were younger, but species numbers increased with increasing clade age. A fossil-based data set also revealed a strong, positive relationship between total extant species richness and crown group age across the orders of insects and vertebrates. These findings do not negate the importance of ecology or phenotype in influencing diversification rates, but they do show that clade longevity is the dominant signal in major animal biodiversity patterns. Thus, some key innovations may have acted through fostering clade longevity and not by heightening diversification rate. PMID:17427118

  20. Independent origins of parasitism in Animalia.

    Science.gov (United States)

    Weinstein, Sara B; Kuris, Armand M

    2016-07-01

    Nearly half of all animals may have a parasitic lifestyle, yet the number of transitions to parasitism and their potential for species diversification remain unresolved. Based on a comprehensive survey of the animal kingdom, we find that parasitism has independently evolved at least 223 times in just 15 phyla, with the majority of identified independent parasitic groups occurring in the Arthropoda, at or below the level of Family. Metazoan parasitology is dominated by the study of helminthes; however, only 20% of independently derived parasite taxa belong to those groups, with numerous transitions also seen in Mollusca, Rotifera, Annelida and Cnidaria. Parasitism is almost entirely absent from deuterostomes, and although worm-like morphology and host associations are widespread across Animalia, the dual symbiotic and trophic interactions required for parasitism may constrain its evolution from antecedent consumer strategies such as generalist predators and filter feeders. In general, parasitic groups do not differ from their free-living relatives in their potential for speciation. However, the 10 largest parasitic clades contain 90% of described parasitic species, or perhaps 40% of all animal species. Hence, a substantial fraction of animal diversity on the Earth arose following these few transitions to a parasitic trophic strategy. PMID:27436119

  1. Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting.

    Science.gov (United States)

    Valiente Moro, Claire; Thioulouse, Jean; Chauve, Claude; Normand, Philippe; Zenner, Lionel

    2009-01-01

    Dermanyssus gallinae (Arthropoda, Mesostigmata) is suspected to be involved in the transmission of a wide variety of pathogens, but nothing is known about its associated non-pathogenic bacterial community. To address this question, we examined the composition of bacterial communities in D. gallinae collected from standard poultry farms in Brittany, France. Genetic fingerprints of bacterial communities were generated by temporal temperature gradient gel electrophoresis (TTGE) separation of individual polymerase chain reaction (PCR)-amplified 16S rRNA gene fragments, followed by DNA sequence analysis. Most of the sequences belonged to the Proteobacteria and Firmicute phyla, with a majority of sequences corresponding to the Enterobacteriales order and the Staphylococcus genus. By using statistical analysis, we showed differences in biodiversity between poultry farms. We also determined the major phylotypes that compose the characteristic microbiota associated with D. gallinae. Saprophytes, opportunistic pathogens and pathogenic agents such as Pasteurella multocida, Erysipelothrix rhusiopathiae and sequences close to the genus Aerococcus were identified. Endosymbionts such as Schineria sp., Spiroplasma sp. Anistosticta, "Candidatus Cardinium hertigii" and Rickettsiella sp. were also present in the subdominant bacterial community. Identification of potential targets within the symbiont community may be considered in the future as a means of ectoparasite control. PMID:19027065

  2. Decline in intertidal biota after the 2011 Great East Japan Earthquake and Tsunami and the Fukushima nuclear disaster: field observations.

    Science.gov (United States)

    Horiguchi, Toshihiro; Yoshii, Hiroshi; Mizuno, Satoshi; Shiraishi, Hiroaki

    2016-01-01

    In 2011, 2012, and 2013, in the intertidal zones of eastern Japan, we investigated the ecological effects of the severe accident at the Fukushima Daiichi Nuclear Power Plant that accompanied the 2011 Great East Japan Earthquake and Tsunami. The number of intertidal species decreased significantly with decreasing distance from the power plant, and no rock shell (Thais clavigera) specimens were collected near the plant, from Hirono to Futaba Beach (a distance of approximately 30 km) in 2012. The collection of rock shell specimens at many other sites hit by the tsunami suggests that the absence of rock shells around the plant in 2012 might have been caused by the nuclear accident in 2011. Quantitative surveys in 2013 showed that the number of species and population densities in the intertidal zones were much lower at sites near, or within several kilometers south of, the plant than at other sites and lower than in 1995, especially in the case of Arthropoda. There is no clear explanation for these findings, but it is evident that the intertidal biota around the power plant has been affected since the nuclear accident. PMID:26842814

  3. Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and non-random loss

    Energy Technology Data Exchange (ETDEWEB)

    Lavrov, Dennis V.; Boore, Jeffrey L.; Brown, Wesley M.

    2001-11-08

    We determined the complete mtDNA sequences of the millipedes Narceus annularus and Thyropygus sp. (Arthropoda: Diplopoda) and identified in both genomes all 37 genes typical for metazoan mtDNA. The arrangement of these genes is identical in the two millipedes, but differs from that inferred to be ancestral for arthropods by the location of four genes/gene clusters. This novel gene arrangement is unusual for animal mtDNA, in that genes with opposite transcriptional polarities are clustered in the genome and the two clusters are separated by two non-coding regions. The only exception to this pattern is the gene for cysteine tRNA, which is located in the part of the genome that otherwise contains all genes with the opposite transcriptional polarity. We suggest that a mechanism involving complete mtDNA duplication followed by the loss of genes, predetermined by their transcriptional polarity and location in the genome, could generate this gene arrangement from the one ancestral for arthropods. The proposed mechanism has important implications for phylogenetic inferences that are drawn on the basis of gene arrangement comparisons.

  4. Assessment of Zooplankton Community Composition along a Depth Profile in the Central Red Sea

    KAUST Repository

    Pearman, John K.

    2015-07-17

    The composition of zooplankton in the water column has received limited attention in the main body of the Red Sea and this study investigates the change in the community both spatially and temporally across 11 stations in the central Red Sea. Using molecular methods to target the v9 region of the 18S rRNA gene a total of approximately 11.5 million reads were sequenced resulting in 2528 operational taxonomic units (OTUs) at 97% similarity. The phylum Arthropoda dominated in terms of reads accounting for on average 86.2% and 65.3% for neuston nets and vertical multinets respectively. A reduction in the number of OTUs was noticed with depth for both total metazoa and Maxillopoda whilst there was also a significant change in the composition of the Maxillopoda community. The genus Corycaeus had a higher proportion of reads in the epipelagic zone with Pleuromamma becoming increasingly dominant with depth. No significant difference was observed in the community between night and day sampling however there was a significant difference in the zooplankton community between two sampling periods separated by 10 days.

  5. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.

    Science.gov (United States)

    Koutsovoulos, Georgios; Kumar, Sujai; Laetsch, Dominik R; Stevens, Lewis; Daub, Jennifer; Conlon, Claire; Maroon, Habib; Thomas, Fran; Aboobaker, Aziz A; Blaxter, Mark

    2016-05-01

    Tardigrades are meiofaunal ecdysozoans that are key to understanding the origins of Arthropoda. Many species of Tardigrada can survive extreme conditions through cryptobiosis. In a recent paper [Boothby TC, et al. (2015) Proc Natl Acad Sci USA 112(52):15976-15981], the authors concluded that the tardigrade Hypsibius dujardini had an unprecedented proportion (17%) of genes originating through functional horizontal gene transfer (fHGT) and speculated that fHGT was likely formative in the evolution of cryptobiosis. We independently sequenced the genome of H. dujardini As expected from whole-organism DNA sampling, our raw data contained reads from nontarget genomes. Filtering using metagenomics approaches generated a draft H. dujardini genome assembly of 135 Mb with superior assembly metrics to the previously published assembly. Additional microbial contamination likely remains. We found no support for extensive fHGT. Among 23,021 gene predictions we identified 0.2% strong candidates for fHGT from bacteria and 0.2% strong candidates for fHGT from nonmetazoan eukaryotes. Cross-comparison of assemblies showed that the overwhelming majority of HGT candidates in the Boothby et al. genome derived from contaminants. We conclude that fHGT into H. dujardini accounts for at most 1-2% of genes and that the proposal that one-sixth of tardigrade genes originate from functional HGT events is an artifact of undetected contamination. PMID:27035985

  6. Structural analysis of the α subunit of Na(+)/K(+) ATPase genes in invertebrates.

    Science.gov (United States)

    Thabet, Rahma; Rouault, J-D; Ayadi, Habib; Leignel, Vincent

    2016-01-01

    The Na(+)/K(+) ATPase is a ubiquitous pump coordinating the transport of Na(+) and K(+) across the membrane of cells and its role is fundamental to cellular functions. It is heteromer in eukaryotes including two or three subunits (α, β and γ which is specific to the vertebrates). The catalytic functions of the enzyme have been attributed to the α subunit. Several complete α protein sequences are available, but only few gene structures were characterized. We identified the genomic sequences coding the α-subunit of the Na(+)/K(+) ATPase, from the whole-genome shotgun contigs (WGS), NCBI Genomes (chromosome), Genomic Survey Sequences (GSS) and High Throughput Genomic Sequences (HTGS) databases across distinct phyla. One copy of the α subunit gene was found in Annelida, Arthropoda, Cnidaria, Echinodermata, Hemichordata, Mollusca, Placozoa, Porifera, Platyhelminthes, Urochordata, but the nematodes seem to possess 2 to 4 copies. The number of introns varied from 0 (Platyhelminthes) to 26 (Porifera); and their localization and length are also highly variable. Molecular phylogenies (Maximum Likelihood and Maximum Parsimony methods) showed some clusters constituted by (Chordata/(Echinodermata/Hemichordata)) or (Plathelminthes/(Annelida/Mollusca)) and a basal position for Porifera. These structural analyses increase our knowledge about the evolutionary events of the α subunit genes in the invertebrates. PMID:26812300

  7. Atmospheric Dispersal of Bioactive Streptomyces albidoflavus Strains Among Terrestrial and Marine Environments.

    Science.gov (United States)

    Sarmiento-Vizcaíno, Aida; Braña, Alfredo F; González, Verónica; Nava, Herminio; Molina, Axayacatl; Llera, Eva; Fiedler, Hans-Peter; Rico, José M; García-Flórez, Lucía; Acuña, José L; García, Luis A; Blanco, Gloria

    2016-02-01

    Members of the Streptomyces albidoflavus clade, identified by 16S rRNA sequencing and phylogenetic analyses, are widespread among predominant terrestrial lichens (Flavoparmelia caperata and Xanthoria parietina) and diverse intertidal and subtidal marine macroalgae, brown red and green (Phylum Heterokontophyta, Rhodophyta, and Chlorophyta) from the Cantabrian Cornice. In addition to these terrestrial and coastal temperate habitats, similar strains were also found to colonize deep-sea ecosystems and were isolated mainly from gorgonian and solitary corals and other invertebrates (Phylum Cnidaria, Annelida, Echinodermata, Arthropoda, and Porifera) living up to 4700-m depth and at a temperature of 2-4 °C in the submarine Avilés Canyon. Similar strains have been also repeatedly isolated from atmospheric precipitations (rain drops, snow, and hailstone) collected in the same area throughout a year observation time. These ubiquitous strains were found to be halotolerant, psychrotolerant, and barotolerant. Bioactive compounds with diverse antibiotic and cytotoxic activities produced by these strains were identified by high-performance liquid chromatography (HPLC) and database comparison. These include antibacterials (paulomycins A and B), antifungals (maltophilins), antifungals displaying also cytotoxic activities (antimycins and 6-epialteramides), and the antitumor compound fredericamycin. A hypothetical dispersion model is here proposed to explain the biogeographical distribution of S. albidoflavus strains in terrestrial, marine, and atmospheric environments. PMID:26224165

  8. Зоология = Zoology : учебные тексты : пособие для студентов 1 курса биологического факультета БГУ / [сост. Т. А. Богомолова и др.

    OpenAIRE

    Богомолова, Татьяна Анатольевна

    2009-01-01

    Пособие состоит из 22 текстов, в которых рассматриваются следующие группы животных: Protozoa, Porifera, Coelenterata, Platyhelminthes, Nemathelminthes, Echinodermata, Annelida, Mollusca, Arthropoda, Chordata. Каждый текст включает комплекс упражнений для развития навыков чтения, речи и письма по специальной литературе.

  9. An occurence records database of French Guiana harvestmen (Arachnida, Opiliones

    Directory of Open Access Journals (Sweden)

    Sébastien Cally

    2014-12-01

    Full Text Available This dataset provides information on specimens of harvestmen (Arthropoda, Arachnida, Opiliones collected in French Guiana. Field collections have been initiated in 2012 within the framework of the CEnter for the Study of Biodiversity in Amazonia (CEBA: www.labex-ceba.fr/en/. This dataset is a work in progress.  Occurrences are recorded in an online database stored at the EDB laboratory after each collecting trip and the dataset is updated on a monthly basis. Voucher specimens and associated DNA are also stored at the EDB laboratory until deposition in natural history Museums. The latest version of the dataset is publicly and freely accessible through our Integrated Publication Toolkit at http://130.120.204.55:8080/ipt/resource.do?r=harvestmen_of_french_guiana or through the Global Biodiversity Information Facility data portal at http://www.gbif.org/dataset/3c9e2297-bf20-4827-928e-7c7eefd9432c.

  10. Wood-associated fauna collected during the KuramBio expedition in the North West Pacific

    Science.gov (United States)

    Schwabe, Enrico; Bartsch, Ilse; Błażewicz-Paszkowycz, Magdalena; Brenke, Nils; Chernyshev, Alexei V.; Elsner, Nikolaus O.; Fischer, Viola; Jażdżewska, Anna; Malyutina, Marina V.; Miljutin, Dmitry; Miljutina, Maria; Kamenev, Gennady M.; Karanovic, Ivana; Maiorova, Anastassya; Würzberg, Laura

    2015-01-01

    Individual wood fragments obtained from Agassiz trawl samples in the abyssal plain area off the Kuril-Kamchatka Trench were analysed for faunistic components. Out of seven pieces of wood collected, only five harboured fauna and each showed distinctively different colonization patterns. In total, 257 specimens, mainly belonging to the phyla Arthropoda, Nematoda, Mollusca and Annelida, were collected from the available pieces of wood. While wood-boring bivalves of the genus Xylophaga, generally seen as opportunists among wood-converting organisms, were present at nearly all stations, the overwhelming majority of taxa found were restricted to individual pieces of wood. A fresh piece of wood from a site opposite to the Tsugaru Strait, was the most heavily colonized. The presence of shallow or even putative fresh-water taxa beside truly deep-water components possibly suggests a recent sinking of that particular wood fragment and demonstrates the role of such ephemeral organic objects in deep-sea ecosystems as energy-rich feeding grounds and potential distributional stepping stones. Detailed studies of driftwood communities on single sunken wood fragments from deep oceans are limited. The present data not only demonstrate a tolerance of some taxa to changes in physical parameters, such as hydrostatic pressure, salinity and temperature, but also indicate a higher biodiversity on fresher wood pieces compared to wood which already underwent decomposition processes. It is, however, not clear whether the species diversity was linked to the type of wood, since exhaustive analyses on the wood pieces themselves were not conducted.

  11. The Compact Body Plan of Tardigrades Evolved by the Loss of a Large Body Region.

    Science.gov (United States)

    Smith, Frank W; Boothby, Thomas C; Giovannini, Ilaria; Rebecchi, Lorena; Jockusch, Elizabeth L; Goldstein, Bob

    2016-01-25

    The superphylum Panarthropoda (Arthropoda, Onychophora, and Tardigrada) exhibits a remarkable diversity of segment morphologies, enabling these animals to occupy diverse ecological niches. The molecular identities of these segments are specified by Hox genes and other axis patterning genes during development [1, 2]. Comparisons of molecular segment identities between arthropod and onychophoran species have yielded important insights into the origins and diversification of their body plans [3-9]. However, the relationship of the segments of tardigrades to those of arthropods and onychophorans has remained enigmatic [10, 11], limiting our understanding of early panarthropod body plan diversification. Here, we reveal molecular identities for all of the segments of a tardigrade. Based on our analysis, we conclude that tardigrades have lost a large intermediate region of the body axis-a region corresponding to the entire thorax and most of the abdomen of insects-and that they have lost the Hox genes that originally specified this region. Our data suggest that nearly the entire tardigrade body axis is homologous to just the head region of arthropods. Based on our results, we reconstruct a last common ancestor of Panarthropoda that had a relatively elongate body plan like most arthropods and onychophorans, rather than a compact, tardigrade-like body plan. These results demonstrate that the body plan of an animal phylum can originate by the loss of a large part of the body. PMID:26776737

  12. Wetland macroinvertebrates of Prentiss Bay, Lake Huron, Michigan: diversity and functional group composition

    Science.gov (United States)

    Merritt, R.W.; Benbow, M.E.; Hudson, P.L.

    2002-01-01

    The Great Lakes support many fish and waterbirds that depend directly or indirectly on coastal wetlands during some portion of their life cycle. It is known that macroinvertebrates make up an important part of wetland food webs and ecosystem function; however, our understanding of species distribution within and among wetlands has only recently received attention. We investigated the macroinvertebrates of a freshwater marsh (Prentiss Bay) in the Les Chenaux Island Area of Northern Lake Huron, Michigan. Macroinvertebrate taxa diversity and functional feeding group composition were compared between two habitats. A shallow depositional habitat with higher vegetation diversity and little wave action was compared to a deeper erosional habitat with fewer plant species and more wave action. A total of 83 taxa were collected over the summer of 1996, representing two phyla (Arthropoda and Mollusca) and five classes (Arachnida, Bivalvia, Malacostraca, Gastropoda and Insecta). A total of 79 genera were identified, with 92% being insects (39 families composed of at least 73 genera). Of the total, 42 insect genera were common to both habitats,while relatively fewer were collected exclusively from the erosional compared the depositional habitat. When habitats were pooled, predators comprised about 50% of the functional group taxa, while gathering collectors and shredders each were about 20%. Filtering collectors and scrapers each represented functional groups were lower. These data suggest that vegetation diversity, depth and wave action affect taxa composition and functional group organization of the Prentiss Bay marsh.

  13. Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods and appendicularia

    KAUST Repository

    Mojib, Nazia

    2014-06-01

    The tropical oligotrophic oceanic areas are characterized by high water transparency and annual solar radiation. Under these conditions, a large number of phylogenetically diverse mesozooplankton species living in the surface waters (neuston) are found to be blue pigmented. In the present study, we focused on understanding the metabolic and genetic basis of the observed blue phenotype functional equivalence between the blue-pigmented organisms from the phylum Arthropoda, subclass Copepoda (Acartia fossae) and the phylum Chordata, class Appendicularia (Oikopleura dioica) in the Red Sea. Previous studies have shown that carotenoid–protein complexes are responsible for blue coloration in crustaceans. Therefore, we performed carotenoid metabolic profiling using both targeted and nontargeted (high-resolution mass spectrometry) approaches in four different blue-pigmented genera of copepods and one blue-pigmented species of appendicularia. Astaxanthin was found to be the principal carotenoid in all the species. The pathway analysis showed that all the species can synthesize astaxanthin from β-carotene, ingested from dietary sources, via 3-hydroxyechinenone, canthaxanthin, zeaxanthin, adonirubin or adonixanthin. Further, using de novo assembled transcriptome of blue A. fossae (subclass Copepoda), we identified highly expressed homologous β-carotene hydroxylase enzymes and putative carotenoid-binding proteins responsible for astaxanthin formation and the blue phenotype. In blue O. dioica (class Appendicularia), corresponding putative genes were identified from the reference genome. Collectively, our data provide molecular evidences for the bioconversion and accumulation of blue astaxanthin–protein complexes underpinning the observed ecological functional equivalence and adaptive convergence among neustonic mesozooplankton.

  14. Macroinvertebrates of the Iranian running waters: a review

    Directory of Open Access Journals (Sweden)

    Moslem Sharifinia

    2015-12-01

    Full Text Available Abstract A comprehensive review of macroinvertebrate studies conducted along the Iranian running waters over the last 15 years has been made by providing the most updated checklist of the Iranian running waters benthic invertebrates. Running waters ecosystems are complex environments known for their importance in terms of biodiversity. As part of the analysis, we endeavored to provide the critical re-identification of the reported species by through comparisons with the database of the Animal Diversity Web (ADW and appropriate literature sources or expert knowledge. A total of 126 species belonging to 4 phyla have been compiled from 57 references. The phylum Arthropoda was found to comprise the most taxa (n = 104 followed by Mollusca, Annelida and Platyhelminthes. Ongoing efforts in the Iranian running waters regarding biomonitoring indices development, testing, refinement and validation are yet to be employed in streams and rivers. Overall, we suggest that future macroinvertebrate studies in Iranian running waters should be focused on long-term changes by broadening target species and strong efforts to publish data in peer-reviewed journals in English.

  15. 卤虫属分类研究进展%Progress on Researches of Taxonomy on Genus Artemia

    Institute of Scientific and Technical Information of China (English)

    张伟峰; 郝浩永; 陈莉

    2008-01-01

    卤虫(Anemia)属于节肢动物门(Phylum Arthropoda),甲壳纲(Class Crustacea),鳃足亚纲(SubclassBranchiopoda),无甲目(Order Anostraca),卤虫科(Family Artemidae).世界卤虫根据生殖方式可分为两性生殖卤虫和孤雌生殖卤虫两大类.利用生殖隔离实验将世界两性卤虫分为8个种:Anemiafranciscana Kellogg、Artemia persimilis Piccinelli et Prosdoeimi、Anemia rnonica Verrill、Anemia salina Linnaeus、Artemia urmianaGünther、Anemia tunisiana Bowen et Sterling、Anemia sinica Cai和Anemia tibetiana Abatzopouios,Zhang et Sorge-loos.其中,我国发现有A.sinica和A.tibetiana两种两性卤虫.孤雌生殖卤虫统称为Artemia parthenogenetica,并在其后加上产地的地名以示区别.

  16. Analysis on the characteristics of macrobenthis community in the North-west Daya Bay Of South China Bay in spring%大亚湾西北部春季大型底栖动物群落特征

    Institute of Scientific and Technical Information of China (English)

    杜飞雁; 林钦; 贾晓平; 杨圣云; 马胜伟; 陈海刚; 李纯厚

    2011-01-01

    利用2008年春季在大亚湾西北部海域开展的12个测站的大型底栖动物调查资料,对该海域大型底栖动物的群落特征进行分析.结果表明该海域内大型底栖动物优势种由粗帝汶蛤(Timoclea scabra)、波纹巴非蛤(Paphia undulata)、上野蜾嬴蜚(Corophium uenoi)、方背鳞虫(Lepidonotus squamatus)、刀明樱蛤(Moerella culter)和角海蛹(Ophelia acuminata)等6种组成;可划分为4个群落,群落Ⅱ和群落Ⅰ为主体群落,群落Ⅲ和群落Ⅳ分布区较小,群落间差异较大.大型底栖动物数量上以个体较大的软体动物占优,但群落的组成则以多毛类和甲壳类为主,其组成情况基本上反映了群落的特征.群落Ⅰ以多毛类-甲壳类为表征,群落Ⅱ则以甲壳类-多毛类-软体动物为表征.栖息环境的差异,是造成群落间差异的主要原因;群落多样性水平呈群落Ⅲ>群落Ⅱ>群落Ⅰ>群落Ⅳ,沉积环境的污染状况和人为扰动是影响多样性水平的主要因素;群落整体的稳定性较好,未受到明显的扰动,但分布于航道区域和渔业生产作业区的群落Ⅳ和群落Ⅲ,在航道建设、疏浚和渔业生产的影响下,群落受到一定程度的扰动,稳定性较弱.%Based on the data collected from 12 research stations in the North-west Daya Bay, South China Sea in spring 2008, the characteristics of macrobenthis community were examined. The results showed that the dominant macrobenthic species were Timoclea scabra, Paphia undulate, Corophium uenoi, Lepidonotus squamatus, Moerella culler and Ophelia acuminate. The macrobenthos community could be divided into four groups with notable differences. Group I and Ⅱ were the dominant groups, while the distribution areas of Groups Ⅲ and Ⅳ were relatively small. Overall, molluscs was dominant in quantity in the macrobenthos community but the community was mainly composed of Annelida and Arthropoda, reflecting the characteristics of the

  17. Tidal effects on short-term mesozooplankton distribution in small channels of a temperate-turbid estuary, Southwestern Atlantic

    Directory of Open Access Journals (Sweden)

    Javier Chazarreta

    2015-06-01

    Full Text Available Abstract The short-term variability of mesozooplankton distribution and physicochemical variables was examined in two different channels of the Bahía Blanca Estuary, Argentina, during two tidal cycles. All the physicochemical measurements and mesozooplankton sampling were performed at a fixed site during approximately 22-23 h at 3-h intervals. Pumps were used to obtain surface and bottom mesozooplankton samples and the water speed of each stratum was measured with an Acoustic Doppler Current Profiler (ADCP. In all, 23 mesozooplanktonic taxa belonging to four phyla (Arthropoda, Annelida, Echinodermata and Chordata were identified. The most abundant taxa during the two tidal cycles were Balanus glandula larvae, Eurytemora americana and Acartia tonsa. A discernible variability in the water conditions and vertical mesozooplankton distribution (VMD different from that known for the estuary's main channel, was found in the other two selected channels. VMD varied during the tidal cycle in both channels in accordance with the channel's geomorphology and water dynamic characteristics of each of them. The variation of the abundance of the different taxa during ebb and flood currents might indicate the existence of a tidal vertical migration of the mesozooplankton as a response to particular dynamic water conditions.

  18. Antitumor and immune regulation activities of the extracts of some Chinese marine invertebrates

    Institute of Scientific and Technical Information of China (English)

    ZHANG Lixin; FAN Xiao; HAN Lijun

    2005-01-01

    Extracts of 21 marine invertebrates belonging to Coelenterata, Mollusca, Annelida, Bryozoa,Echiura, Arthropoda, Echinodermata and Urochordata were screened for the studies on their antitumor and immune regulation activities. Antitumor activity was determined by MTT method and immune regulation activity was studied using T- and B-lymphocytes in mice spleen in vitro. It was found that the n-butanol part of Asterina pectinifera, the acetic ether part of Tubuaria marina, 95% ethanol extract of Acanthochiton rubrolineatus have a high inhibition rate of 96.7%, 63.9% and 50.5% respectively on tumor cell line HL-60 at the concentration of 0.063 mg/ml. The inhibition rate of the acetic ether part of Tubuaria marina on the tumor cell line A-549 is 65.4 % at concentration of 0.063 mg/mL. The 95% ethanol extract of Meretrix meretrix has so outstanding promoting effect on T-lymphocyfes that their multiplication increases 25% when the sample concentration is only 1 μg/ml. On B-lymphocytes, the 95% extract of Rapana venosa, at concentration of 100μg/ml, has a promotion percentage of 60%. On the other hand, under the condition of no cytotoxic effect, the 95% ethanol extracts of Acanthochiton rubrolineatus and Cellana toreum can reach 92% inhibition rate on T lymphocyte at concentration of 100 μg/ml, while the inhibition rate on B lymphocyte of the 95% extract of Acanthochiton rubrolineatus reaches 92% at the same concentration.

  19. Discovery of radioactive silver (110mAg) in spiders and other fauna in the terrestrial environment after the meltdown of Fukushima Dai-ichi Nuclear Power Plant

    International Nuclear Information System (INIS)

    Six months after the explosion of TEPCO's Fukushima Dai-ichi nuclear power plant, radioactive silver (110mAg), was detected in concentrations of 3754 Bq/kg in Nephila clavata (the orb-web spider; Joro-gumo in Japanese) collected at Nimaibashi, Iitate village in Fukushima Prefecture, whereas 110mAg in the soil was 43.1 Bq/kg. A survey of 35 faunal species in the terrestrial environment during the 3.5 years after the accident showed that most of Anthropoda had two orders higher 110mAg in their tissues than soils, although silver is not an essential element for their life. However, tracing of the activity of 110mAg detected in spider Atypus karschi collected regularly at a fixed location showed that it declined much faster than the physical half-life. These results suggest that 110mAg was at once biologically concentrated by faunal species, especially Arthropoda, through food chain. The factors affecting the subsequent rapid decline of 110mAg concentration in faunal species are discussed. (author)

  20. A molecular palaeobiological exploration of arthropod terrestrialization

    Science.gov (United States)

    Carton, Robert; Edgecombe, Gregory D.

    2016-01-01

    Understanding animal terrestrialization, the process through which animals colonized the land, is crucial to clarify extant biodiversity and biological adaptation. Arthropoda (insects, spiders, centipedes and their allies) represent the largest majority of terrestrial biodiversity. Here we implemented a molecular palaeobiological approach, merging molecular and fossil evidence, to elucidate the deepest history of the terrestrial arthropods. We focused on the three independent, Palaeozoic arthropod terrestrialization events (those of Myriapoda, Hexapoda and Arachnida) and showed that a marine route to the colonization of land is the most likely scenario. Molecular clock analyses confirmed an origin for the three terrestrial lineages bracketed between the Cambrian and the Silurian. While molecular divergence times for Arachnida are consistent with the fossil record, Myriapoda are inferred to have colonized land earlier, substantially predating trace or body fossil evidence. An estimated origin of myriapods by the Early Cambrian precedes the appearance of embryophytes and perhaps even terrestrial fungi, raising the possibility that terrestrialization had independent origins in crown-group myriapod lineages, consistent with morphological arguments for convergence in tracheal systems. This article is part of the themed issue ‘Dating species divergences using rocks and clocks’. PMID:27325830

  1. Assessment of Zooplankton Community Composition along a Depth Profile in the Central Red Sea.

    Directory of Open Access Journals (Sweden)

    John K Pearman

    Full Text Available The composition of zooplankton in the water column has received limited attention in the main body of the Red Sea and this study investigates the change in the community both spatially and temporally across 11 stations in the central Red Sea. Using molecular methods to target the v9 region of the 18S rRNA gene a total of approximately 11.5 million reads were sequenced resulting in 2528 operational taxonomic units (OTUs at 97% similarity. The phylum Arthropoda dominated in terms of reads accounting for on average 86.2% and 65.3% for neuston nets and vertical multinets respectively. A reduction in the number of OTUs was noticed with depth for both total metazoa and Maxillopoda whilst there was also a significant change in the composition of the Maxillopoda community. The genus Corycaeus had a higher proportion of reads in the epipelagic zone with Pleuromamma becoming increasingly dominant with depth. No significant difference was observed in the community between night and day sampling however there was a significant difference in the zooplankton community between two sampling periods separated by 10 days.

  2. Unusually long palindromes are abundant in mitochondrial control regions of insects and nematodes.

    Directory of Open Access Journals (Sweden)

    K P Arunkumar

    Full Text Available BACKGROUND: Palindromes are known to be involved in a variety of biological processes. In the present investigation we carried out a comprehensive analysis of palindromes in the mitochondrial control regions (CRs of several animal groups to study their frequency, distribution and architecture to gain insights into the origin of replication of mtDNA. METHODOLOGY/PRINCIPAL FINDINGS: Many species of Arthropoda, Nematoda, Mollusca and Annelida harbor palindromes and inverted repeats (IRs in their CRs. Lower animals like cnidarians and higher animal groups like chordates are almost devoid of palindromes and IRs. The study revealed that palindrome occurrence is positively correlated with the AT content of CRs, and that IRs are likely to give rise to longer palindromes. CONCLUSIONS/SIGNIFICANCE: The present study attempts to explain possible reasons and gives in silico evidence for absence of palindromes and IRs from CR of vertebrate mtDNA and acquisition and retention of the same in insects. Study of CRs of different animal phyla uncovered unique architecture of this locus, be it high abundance of long palindromes and IRs in CRs of Insecta and Nematoda, or short IRs of 10-20 nucleotides with a spacer region of 12-14 bases in subphylum Chelicerata, or nearly complete of absence of any long palindromes and IRs in Vertebrata, Cnidaria and Echinodermata.

  3. How many marine aliens in Europe?

    Directory of Open Access Journals (Sweden)

    Stelios Katsanevakis

    2013-01-01

    Full Text Available In the framework of the European Alien Species Information Network (EASIN; http://easin.jrc.ec.europa.eu/, an inventory of marine alienspecies in Europe was created by critically reviewing existing information in 34 global, European, regional and national databases. In total, 1369 marine alien species have been reported in the European seas (including 110 cryptogenic and 139 questionable species; this is a substantial increase from the 737 species previously reported in 2009 based on the DAISIE (Delivering Alien Invasive Species Inventories for Europe; http://www.europe-aliens.org dataset. Most of the reported species were invertebrates (63.3%, followed by chromists (13.7%, vertebrates (11.6%, and plants (10.1%. Mollusca is the most numerous phylum, followed by Arthropoda, Chordata, and Annelida. Thecountries with the highest reported numbers of marine alien species were Israel, Turkey, Italy, France, Egypt and Greece. A reporting bias is evident as efforts for monitoring and reporting alien species vary among countries.

  4. Lysozymes in the animal kingdom

    Indian Academy of Sciences (India)

    Lien Callewaert; Chris W Michiels

    2010-03-01

    Lysozymes (EC 3.2.1.17) are hydrolytic enzymes, characterized by their ability to cleave the -(1,4)-glycosidic bond between -acetylmuramic acid and -acetylglucosamine in peptidoglycan, the major bacterial cell wall polymer. In the animal kingdom, three major distinct lysozyme types have been identified – the c-type (chicken or conventional type), the g-type (goose-type) and the i-type (invertebrate type) lysozyme. Examination of the phylogenetic distribution of these lysozymes reveals that c-type lysozymes are predominantly present in the phylum of the Chordata and in different classes of the Arthropoda. Moreover, g-type lysozymes (or at least their corresponding genes) are found in members of the Chordata, as well as in some bivalve mollusks belonging to the invertebrates. In general, the latter animals are known to produce i-type lysozymes. Although the homology in primary structure for representatives of these three lysozyme types is limited, their three-dimensional structures show striking similarities. Nevertheless, some variation exists in their catalytic mechanisms and the genomic organization of their genes. Regarding their biological role, the widely recognized function of lysozymes is their contribution to antibacterial defence but, additionally, some lysozymes (belonging to different types) are known to function as digestive enzymes.

  5. The 'other faunivory' revisited: Insectivory in human and non-human primates and the evolution of human diet.

    Science.gov (United States)

    McGrew, William C

    2014-06-01

    The role of invertebrates in the evolution of human diet has been under-studied by comparison with vertebrates and plants. This persists despite substantial knowledge of the importance of the 'other faunivory', especially insect-eating, in the daily lives of non-human primates and traditional human societies, especially hunters and gatherers. Most primates concentrate on two phyla, Mollusca and Arthropoda, but of the latter's classes, insects (especially five orders: Coleoptera, Hymenoptera, Isoptera, Lepidoptera, Orthoptera) are paramount. An insect product, bees' honey, is particularly important, and its collection shows a reversal of the usual sexual division of labor. Human entomophagy involves advanced technology (fire, containers) and sometimes domestication. Insectivory provides comparable calorific and nutritional benefits to carnivory, but with different costs. Much insectivory in hominoids entails elementary technology used in extractive foraging, such as termite fishing by chimpanzees. Elucidating insectivory in the fossil and paleontological record is challenging, but at least nine avenues are available: remains, lithics, residues, DNA, coprolites, dental microwear, stable isotopes, osteology, and depictions. All are in play, but some have been more successful so far than others. PMID:24560030

  6. Key to marine arthropod larvae

    Directory of Open Access Journals (Sweden)

    John A. Fornshell

    2012-03-01

    Full Text Available The scope of this key is restricted to the larvae of marine arthropods. The key is based solely on their morphology, patterns of body segmentation, numbers of appendages, and mode of locomotion. An effort has been made to treat all traditionally named larval forms, both planktonic and benthic. It is intended that this key be useful for a researcher working with archived museum specimens and therefore, does not include habitat information as a identifying trait, even though this information is usually available in the archived records. Within the phylum Arthropoda there are two sub-phyla and eleven classes having larval stages in the marineenvironment. Where feasible the original names of the various larval types have been used. Because this nomenclature is less commonly used today compared to the past, the more recent taxonomic affinities are included in parentheses after the original larval name. The key includes the following thirty-four larvae: Branchhiopoda nauplii; Cephalocarida nauplii; Mystacocarida nauplii; trilobite larva; protonymphon; hexapod larvae; Remipedia nauplii; nauplius - Y larvae; Cirripedia nauplii; Ascothoracida nauplii; Ostracoda nauplii; Euphausiacea nauplii; Penaeidea nauplii; Cyclopoida nauplii; Calanoida nauplii; Harpacticoida nauplii;Polyarthra nauplii; cypris larva; eryonecius larva; cypris-Y larva; elapthocaris larvae; mysis larvae; lucifer zoea; acetes zoea; acanthosoma larva; phyllosoma; antizoea larva; anomuran zoea; brachyuran zoea; calyptopis larvae; furcilia larva; crytopia larva; puerulus larva; alima larva.

  7. Biota acuática en la Amazonía Peruana: diversidad y usos como indicadores ambientales en el Bajo Urubamba (Cusco - Ucayali

    Directory of Open Access Journals (Sweden)

    Hernán Ortega

    2011-05-01

    Full Text Available En el presente trabajo se aplican índices biológicos de calidad ambiental y conservación, basados en el monitoreo biológico realizado entre año 2003 y 2009, en cinco localidades del río Bajo Urubamba. Fueron estudiadas las comunidades del plancton, bentos y peces. La diversidad del plancton comprendió 170 especies, basadas principalmente en Chlorophyta y Bacillariophyta. El bentos incluyó 112 especies, principalmente larvas y adultos de Arthropoda (Insecta. La diversidad de peces, incluye 176 especies, representadas por 26 familias y seis órdenes. El Índice Ephemeroptera + Plecoptera + Trichoptera (%EPT, califico el área de estudio entre normal a muy buena calidad. El índice de Integridad Biológica (IBI que determina el estado de conservación de los ambientes acuáticos, dio los mayores valores en Miaría y Sepahua. La elevada diversidad de las comunidades estudiados estaría relacionada a la heterogeneidad de hábitats y mayores recursos observados en la parte baja del área de estudio.

  8. Quality of laboratory studies assessing effects of Bt-proteins on non-target organisms: minimal criteria for acceptability.

    Science.gov (United States)

    De Schrijver, Adinda; Devos, Yann; De Clercq, Patrick; Gathmann, Achim; Romeis, Jörg

    2016-08-01

    The potential risks that genetically modified plants may pose to non-target organisms and the ecosystem services they contribute to are assessed as part of pre-market risk assessments. This paper reviews the early tier studies testing the hypothesis whether exposure to plant-produced Cry34/35Ab1 proteins as a result of cultivation of maize 59122 is harmful to valued non-target organisms, in particular Arthropoda and Annelida. The available studies were assessed for their scientific quality by considering a set of criteria determining their relevance and reliability. As a case-study, this exercise revealed that when not all quality criteria are met, weighing the robustness of the study and its relevance for risk assessment is not obvious. Applying a worst-case expected environmental concentration of bioactive toxins equivalent to that present in the transgenic crop, confirming exposure of the test species to the test substance, and the use of a negative control were identified as minimum criteria to be met to guarantee sufficiently reliable data. This exercise stresses the importance of conducting studies meeting certain quality standards as this minimises the probability of erroneous or inconclusive results and increases confidence in the results and adds certainty to the conclusions drawn. PMID:26980555

  9. The seasonal variation of arthropods living on forest soil at different altitudes in fir (Abies nordmanniana subsp. bornmulleriana ecosystem in Bolu-Aladağ

    Directory of Open Access Journals (Sweden)

    Ahmet Duyar

    2016-07-01

    Full Text Available In the forest ecosystems, soil arthropods (Arthropoda, as primary and secondary consumers, have a significant role in litter decay and decomposition processes. The abundance, diversity and community structure of arthropods in soil ecosystem; give rapid response to change of site characteristics. The current study was aimed to determine of seasonal variation of soil arthropods on forest floor at different altitudes in Uludağ Fir (Abies nordmanniana subsp. bornmulleriana Mattf. ecosystem which is an important forest tree species in Turkey. The study was conducted in pure fir stands at 1200-1600 m altitudes (4 elevation gradients in Aladağ, Bolu. The sampling was carried out for each winter, spring, summer and autumn seasons. The samples were collected from forest floor by pitfall traps. Variations of abundance and diversity of arthropods were evaluated according to seasons and altitudes. The distributions in trophic levels and biological diversity of arthropods were also determined. During the study, the maximum abundance of arthropods was 7576 individuals/m² in summer among seasons, and was 7854 individuals/m² at 1200 m altitude. Shannon-Wiener Index (H′ and Species Richness (S′ values were detected in the pitfall traps (H′= 2.22; S′= 22.

  10. Diversity of energy fluxes and interactions between arthropod communities: from soil to cave

    Science.gov (United States)

    Gers, Charles

    1998-06-01

    The vertical distribution of a species may directly indicate the stage of organic matter decomposition in which it takes part. Observations have so far been limited to superficial layers, but studies on the continuum from the litter to underground biotopes, through the recently discovered superficial underground compartment, open new perspectives in the analyses of matter and energy fluxes. Sampling at different levels, from leaf litter to caves, using pitfall traps and sunken tubes, has revealed the existence of exchanges of organic matter and Arthropoda between different layers. The importation of energy from soil to cave follows two routes: passive and active. For the passive route, I measured dissolved substances in water at five levels. For the active route, I evaluated the migrations of insects and other invertebrates (downwards as well as upwards). For the analysis of arthropod communities, using the notion of functional groups, I showed the existence of links between two components, hypogean species, and endogean-epigean species, defining an ecotone along the vertical gradient 'soil to cave'. The superficial underground compartment is not isolated, but is rather a whole food web with epigean and endogean organisms penetrating and interlinking with another web of hypogean origin.

  11. Antimicrobial peptides in marine invertebrate health and disease.

    Science.gov (United States)

    Destoumieux-Garzón, Delphine; Rosa, Rafael Diego; Schmitt, Paulina; Barreto, Cairé; Vidal-Dupiol, Jeremie; Mitta, Guillaume; Gueguen, Yannick; Bachère, Evelyne

    2016-05-26

    Aquaculture contributes more than one-third of the animal protein from marine sources worldwide. A significant proportion of aquaculture products are derived from marine protostomes that are commonly referred to as 'marine invertebrates'. Among them, penaeid shrimp (Ecdysozosoa, Arthropoda) and bivalve molluscs (Lophotrochozoa, Mollusca) are economically important. Mass rearing of arthropods and molluscs causes problems with pathogens in aquatic ecosystems that are exploited by humans. Remarkably, species of corals (Cnidaria) living in non-exploited ecosystems also suffer from devastating infectious diseases that display intriguing similarities with those affecting farmed animals. Infectious diseases affecting wild and farmed animals that are present in marine environments are predicted to increase in the future. This paper summarizes the role of the main pathogens and their interaction with host immunity, with a specific focus on antimicrobial peptides (AMPs) and pathogen resistance against AMPs. We provide a detailed review of penaeid shrimp AMPs and their role at the interface between the host and its resident/pathogenic microbiota. We also briefly describe the relevance of marine invertebrate AMPs in an applied context.This article is part of the themed issue 'Evolutionary ecology of arthropod antimicrobial peptides'. PMID:27160602

  12. Complete mitochondrial genome sequence of the polychaete annelidPlatynereis dumerilii

    Energy Technology Data Exchange (ETDEWEB)

    Boore, Jeffrey L.

    2004-08-15

    Complete mitochondrial genome sequences are now available for 126 metazoans (see Boore 1999; Mitochondrial Genomics link at http://www.jgi.doe.gov), but the taxonomic representation is highly biased. For example, 80 are from a single phylum, Chordata, and show little variation for many molecular features. Arthropoda is represented by 16 taxa, Mollusca by eight, and Echinodermata by five, with only 17 others from the remaining {approx}30 metazoan phyla. With few exceptions (see Wolstenholme 1992 and Boore 1999) these are circular DNA molecules, about 16 kb in size, and encode the same set of 37 genes. A variety of non-standard names are sometimes used for animal mitochondrial genes; see Boore (1999) for gene nomenclature and a table of synonyms. Mitochondrial genome comparisons serve as a model of genome evolution. In this system, much smaller and simpler than that of the nucleus, are all of the same factors of genome evolution, where one may find tractable the changes in tRNA structure, base composition, genetic code, gene arrangement, etc. Further, patterns of mitochondrial gene rearrangements are an exceptionally reliable indicator of phylogenetic relationships (Smith et al.1993; Boore et al. 1995; Boore, Lavrov, and Brown 1998; Boore and Brown 1998, 2000; Dowton 1999; Stechmann and Schlegel 1999; Kurabayashi and Ueshima 2000). To these ends, we are sampling further the variation among major animal groups in features of their mitochondrial genomes.

  13. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea.

    Science.gov (United States)

    Pearman, John K; Irigoien, Xabier; Carvalho, Susana

    2016-04-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore-offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales. PMID:26525270

  14. Phylogenomics supports Panpulmonata: opisthobranch paraphyly and key evolutionary steps in a major radiation of gastropod molluscs.

    Science.gov (United States)

    Kocot, Kevin M; Halanych, Kenneth M; Krug, Patrick J

    2013-12-01

    Pulmonates, with over 30,000 described species, represent the largest radiation of non-marine animals outside of Arthropoda. The pulmonate lung was a key evolutionary innovation enabling diversification of terrestrial and freshwater snails and slugs. However, recent studies drew conflicting conclusions about pulmonate monophyly, and support for a sister group is lacking, hindering our understanding of this major animal radiation. Analyses of mitochondrial protein-coding genes recovered a paraphyletic Pulmonata grading into a monophyletic Opisthobranchia, a traditional group of sea slugs long considered sister to pulmonates. Conversely, analyses of datsets dominated by nuclear rDNA indicated Opisthobranchia is paraphyletic with respect to Pulmonata. No study resolved the placement of two key taxa: Sacoglossa, an opisthobranch group including photosynthetic sea slugs, and Siphonarioidea, intertidal limpet-like snails traditionally in Pulmonata. To examine evolutionary relationships at the base of the pulmonate radiation, we performed a phylogenomic analysis of 102 nuclear protein-coding gene regions for 19 gastropods. Opisthobranchia was recovered as paraphyletic with respect to Panpulmonata, a clade in which Sacoglossa was sister to Pulmonata, with Siphonarioidea as the basal pulmonate lineage. Siphonarioideans share a similar gill structure with shelled sacoglossans but lack the contractile pneumostome of pulmonates, suggesting descent from an evolutionary intermediate that facilitated the pulmonate radiation into non-marine habitats. PMID:23850501

  15. Improved determination of macroscopic parasite preparations using S10 modified plastination procedure

    Directory of Open Access Journals (Sweden)

    Elena Atanaskova

    2010-11-01

    Full Text Available Macroscopic preparations of parasites fixed in formaldehyde or alcohol don’t fulfill in complete the requests for education, as well as their determination, mainly because of the toxic fumes and not enough visible structure of fixed parasite. Using the modified С10 plastination method, parasites from three different phylum were prepared: Plathelminthes: Class Cestoda (Dipilidum caninum, Moniezia spp and larvae from T.Echinococcus granulosus - Echinococcus unilocularis, larvae from T. pisiformis - Cysticercus pisiformis, , larvae from T. hidatigena - Cysticercus tenuicollis, Phylum Nemathelminthes, Class Nematoda, (Ascaris suum, Macracanthorhynchus hirudinaceus, Diro filaria immitis, Phylum Arthropoda, Class Arachnida (tick from the Ixodidae family and Class Insecta (Gasterophilus intestinalis, Hypoderma bovis. The aim of this study was conserving the parasites in native condition with plastination method and improved determination according to their visible morphologic structure. Parasites were previously kept in 10% formaldehyde. Prepared parasites were dry, chemical free, not toxic and safe for the environment, flexible and with detained form and structure. There was a variation in the natural colors in some of the parasites, as a result from long-time formalin fixation. Preparations made with this method are permanent educative material which enables improved study of parasite’s structure.

  16. The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

    KAUST Repository

    Bracken-Grissom, Heather

    2013-12-12

    Over 95% of all metazoan (animal) species comprise the invertebrates, but very few genomes from these organisms have been sequenced. We have, therefore, formed a Global Invertebrate Genomics Alliance (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness. The GIGA Web site () has been launched to facilitate this collaborative venture.

  17. Biodiversity and land degradation in the lower Euphrates subregion of Turkey.

    Science.gov (United States)

    Ozturk, Munir; Kebapci, Umit; Gucel, Salih; Cetin, Esat; Altundag, Ernaz

    2012-04-01

    Atotal of 107 plant taxa were determined in this study, 24 being new records for the area. Out of 813 plant taxa reported from the study area 100 species couldn't be verified. The number of endemics in the study area is around 46. The majorfamilies and genera are Asteraceae, Fabaceae, and Poaceae and Astragalus, Euphorbia, Allium and Trigonella. The area shows a relatively rich and highly diverse fauna. For terrestrial vertebrate species peculiarly showing marginal distribution, this area forms their northernmost distributional limits. Avifauna along the Euphrates valley is quite rich with 207 species. Globally threatened species, Geronticus eremita (Waldrapp), has been observed locally in the area. Many macromammal species once common have gone extinct. Out of 18 lizard species, 3 lizards are known only from the study area. There are 20 species of snakes, one being exclusively endemic to the study area. Nearly 30 fish species are found in Euphrates system. Very scanty information is available for the invertebrate fauna except for some groups of Mollusca and Arthropoda. The biodiversity of the area is under threat from recent developments and abiotic interferences. PMID:23424834

  18. Functional Annotation and Comparative Analysis of a Zygopteran Transcriptome.

    Science.gov (United States)

    Shanku, Alexander G; McPeek, Mark A; Kern, Andrew D

    2013-03-11

    In this paper we present a de novo assembly of the transcriptome of the damselfly, Enallagma hageni, through the use of 454 pyrosequencing. E. hageni is a member of the suborder Zygoptera within the order Odonata, and the Odonata are the basal lineage of the winged insects (Pterygota). To date, sequence data used in phylogenetic analysis of Enallagma species have been derived from either mtDNA or ribosomal nuclear DNA. This transcriptome contained 31,661 contigs that were assembled and translated into 14,813 individual open reading frames. Using these data, we constructed an extensive dataset of 634 orthologous nuclear protein-coding genes across 11 species of Arthropoda, and used Bayesian techniques to elucidate Enallagma's place in the Arthropod phylogenetic tree. Additionally, we demonstrate that the Enallagma transcriptome contains 169 genes that are evolving at rates that differ relative to the rest of the transcriptome (29 accelerated and 140 decreased), and through multiple Gene Ontology searches and clustering methods, we present the first functional-annotation of any palaeopteran's transcriptome in the literature. PMID:23550132

  19. ELNAIS meets EASIN: distribution of marine alien species in Greece using EASIN mapping services and ELNAIS spatial data

    Directory of Open Access Journals (Sweden)

    S. KATSANEVAKIS

    2013-04-01

    Full Text Available The European Alien Species Information Network (EASIN was created with the aim to provide easy access to accurate information on alien species in Europe. EASIN allows the retrieval of spatial information from existing online data providers in order to produce integrated georeferenced distribution maps of alien species in Europe. In November 2012, a new data provider, the Ellenic Network on Aquatic Invasive Species (ELNAIS, joined EASIN; this has significantly increased the available georeferenced information on marine/estuarine alien species in Greek waters. Here, we use maps created by EASIN to show differences in patterns of distribution in Greece for the most abundant Phyla of marine alien species - Mollusca, Arthropoda, Chordata and Annelida. We also show that the two main pathways of introduction of marine alien species (Lessepsian migration and Shipping are related to different patterns of species spatial distribution in Greece. Overall, the tools provided by EASIN can greatly aid scientists and policy makers in obtaining high quality information on marine alien species in Greece, especially after the association with ELNAIS.

  20. Communities of macrobenthos in the intertidal zones of the Luanhe-Yanghe estuary and environmental quality assessment%滦河口-洋河口海域潮间带大型底栖动物群落及其环境质量评价

    Institute of Scientific and Technical Information of China (English)

    李莉; 张永丰; 张臻; 陈燕; 马新

    2014-01-01

    2012年春季(5月)和夏季(8月)对滦河口-洋河口海域潮间带大型底栖动物群落及环境质量进行分析。结果表明:春季调查共鉴定大型底栖动物36种,种类组成以软体动物和多毛类为主;夏季调查共鉴定大型底栖动物22种,种类组成以软体动物和节肢动物为主。夏季大型底栖动物丰度和生物量明显低于春季。春季丰度和生物量皆以软体动物最高;夏季丰度以多毛类最高,生物量以节肢动物最高。滦河口-洋河口海域潮间带大型底栖动物物种数、丰度和生物量从高潮带向低潮带不断增高。采用大型底栖动物污染指数MPI和AMBI指数对调查海域潮间带大型底栖动物生态环境质量进行评价分析时,发现滦河口-洋河口海域潮间带生态环境质量总体处于良好状态,但MPI评价法和AMBI指数法对滦河口-洋河口海域潮间带生态环境质量分级结果存在差异。两种评价方法在生态环境状况分级评价中皆存在一定偏差,还需相互校准,并通过环境压力的梯度数据进行对比分析。%Communities of macrobenthos and environment quality in the Luanhe-Yanghe estuary in spring and summer 2012 have been studied. The result showed that 36 macrobenthos species were identified in spring 2012, and the dominant groups were Mollusca and Polychaeta;22 macrobenthos species were identified in summer 2012, and the dominant groups were Mollusca and Arthropoda. The average abundance and biomass of macrobenthos decreased significantly from spring to summer. The Mollusca had the highest value both in abundance and biomass in spring;the Polychaeta ranked the first in abundance and the Arthropoda had the highest value in biomass in summer. The species, abundance and biomass of macrobenthos continued to improve from the climax zone to the low tide zone in the intertidal zones of the Luanhe-Yanghe estuary. Macrozoobenthos Pollution Index (MPI) and AMBI

  1. Study of the Influence of Gamma Radiation on Certain Pharmacological and Biochemical Action s of Leiurus Quinquestriatus Scorpion Venom

    International Nuclear Information System (INIS)

    Unlike the amphibians, birds, mammals and reptiles, scorpions have no back bone, as they are invertebrates. Scorpions belong to the phylum arthropoda, their bodies are segmented and their legs are jointed. They belong to the class arachnida, because they have eight legs, two pedipalps, two chelicerae and a body composed of eighteen segments. The most important species of Buthidae family are Buthotus tamulus, Leiurus quinquestriatus, Androctonus crassicauda, Androctonus australis, Tityus serrulatus, and Centruroides suffusus (Minton, 2010). Scorpions are found in East Africa, Middle East, India, as well as Central and South America. Classification of scorpions from Africa and Middle East, has been summarized by Vachon, (1966). Unlike snakes, all scorpions are venomous. The venom is injected by means of a stinger found at the tip of the telson, the terminal structure of the tail. The smallest adults may range from approximately 2 to 3 cm and the largest between 15 to 25 cm (Bucherl, 1971). Scorpions have quite variable life spans. The age range appears to be approximately 4–25 years. Scorpions prefer to live in areas where the temperatures range from 20 °C to 37 °C, but may survive from freezing temperatures to the desert heat (Hadley, 1970; Hannah's et al., 2006). The death stalker (Leiurus quinquestriatus), is a member of the Buthidae family. It is also known as Palestine yellow scorpion, Omdurman scorpion, Israeli desert scorpion and numerous other colloquial names. To eliminate confusion, especially with potentially dangerous species, the scientific name is normally used to refer to them. The name Leiurus quinquestriatus roughly translates into English as five-striped smooth-tail. Other species of the genus Leiurus are often referred to as deathstalkersas well (Werness, 2004; Minton, 2010).

  2. A Cambrian micro-lobopodian and the evolution of arthropod locomotion and reproduction

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The evolutionary success of arthropods, the most abundant and diverse animal group, is mainly based on their segmented body and jointed appendages, features that had evolved most likely already before the Cambrian. The first arthropod-like animals, the lobopodians from the Early Cambrian, were unsclerotized and worm-like, and they had unjointed tubular legs. Here we describe the first three-dimensionally preserved Cambrian lobopodian. The material presented of Orstenotubulus evamuellerae gen. et sp. nov. is the smallest and youngest of a lobopodian known. O. evamuellerae shows strikingly detailed similarities to Recent tardigrades and/or onychophorans in its cellular-structured cuticle and the telescopic spines. It also shows similarities to other, longer known lobopodians, but which are ten times as large as the new form. These similarities include the finely annulated body and legs, which is characteristic also for Recent onychophorans, and paired humps continuing into spines situated dorsally to the leg insertions, a feature lacking in the extant forms. The morphology of O. evamuellerae not only elucidates our knowledge about lobopodians, but also aids in a clearer picture of the early evolution of arthropods. An example is the single ventral gonopore between a limb pair of O. evamuellerae, which indicates that a single gonopore, as developed in onychophorans, tardigrades, pentastomids, myriapods and insects, might represent the plesiomorphic state for Arthropoda, while the paired state in chelicerates and crustaceans was convergently achieved. Concerning life habits, the lateral orientation of the limbs and their anchoring spines of the new lobopodian imply that early arthropods were crawlers rather than walkers.

  3. Benthic macroinvertebrates in Italian rice fields

    Directory of Open Access Journals (Sweden)

    Daniela Lupi

    2013-02-01

    Full Text Available Rice fields can be considered man-managed temporary wetlands. Five rice fields handled with different management strategies, their adjacent channels, and a spring were analysed by their benthic macroinvertebrate community to i evaluate the role of rice agroe- cosystem in biodiversity conservation; ii find indicator species which can be used to compare the ecological status of natural wetlands with rice agroecosystems; and iii find the influence of environmental variables on biodiversity. Different methods of data analysis with increasing degree of complexity – from diversity index up to sophisticated multivariate analysis – were used. The investigation provided a picture of benthic macroinvertebrates inhabiting rice agroecosystems where 173 taxa were identified, 89 of which detected in rice paddies. Among them, 4 phyla (Mollusca, Annelida, Nematomorpha, and Arthropoda, 8 classes (Bivalvia, Gastropoda, Oligochaeta, Hirudinea, Gordioida, Insecta, Branchiopoda, and Malacostraca, 24 orders, 68 families, 127 genera and 159 species have been found. Ten threatened and 3 invasive species were detected in the habitats examined. The information obtained by the different methods of data analysis allowed a more comprehensive view on the value of the components of rice agroecosystems. Data analyses highlighted significant differences between habitats (feeding channel and rice field, with higher diversity observed in channels, and emphasised the role of the water chemical-physical parameters. The period of water permanence in rice fields resulted to be only one of the factors influencing the community of benthic macroinvertebrates. The presence of rare/endangered species allowed characterising some stations, but it was less informative about management strategies in rice paddies because most of these species were absent in rice fields.

  4. Benthic Macro-Fauna Composition and Abundance in Sombreiro River, Niger Delta, Nigeria

    Directory of Open Access Journals (Sweden)

    E.N. Ezekiel

    2011-04-01

    Full Text Available The benthic macro-fauna composition and abundance in sombreiro was studied for a period of two years (August 2007 - July2009. A total of twenty-eight species belonging to fourteen (14 families, six (6 classes and three (3 phyla were recorded in Sombreiro River. The phylum Annelida dominated with two classes (Oligochaeta and Polychaeta. Oligochaeta was represented by two families (Naididae and Lumbricidae and seven species having 25% by composition. Polychaeta was represented by seven families (Nereidae, Nepthyidae, Capitellidae, Eucinidae, Glyceridae, Arenicolidae and Syllidae and thirteen species having 46.4% by composition. The Phylum arthropoda was represented by two classes (Crustacea and inseita. Two families (Gammaridae and Penaidae having two species consisting of 7.2% were recorded, for the class crustacea. The class insecta was represented by one family (Chironomidae with one species consisting of 3.6%. The phylum Mollusca was represented by two classes (Gastropoda and Bivalvia. Gastropoda had two species with 7.2% composition and Bivalvia has three species with10.7% composition. Oligochaeta was the highest and constituted 62.0%. The others were Polychaeta (23.9%, Insecta (6.7%, Gastropoda (3.9%, Bivalvia (2.2% and Crustacea (1.3%. The mean diversity(S ranged between 11 species. Mean abundance of individuals (N was 985. Mean Margalef index (d value was 1.339. The mean value for Shannon-Wienner (H was 0.956. Mean Pielou’s index of relative density or evenness index (E was 0.986. Mean SimpsIn’s Dominance index (C was 0.623.

  5. Inter-annual variation (1991-1993) of the substratum-leaf colonization dynamics for aquatic fauna in different habitats of the lake of the hydroelectric of Balbina, Amazon Central, Brazil; Variacao interanual (1991-1993) da dinamica de colonizacao de substrato-folha por fauna aquatica, em diferentes habitats do lago da Hidreletrica de Balbina, Amazonia Central, Amazonas- Brasil

    Energy Technology Data Exchange (ETDEWEB)

    Vela-Pena, Gladys

    1996-07-01

    Experiments on fauna colonization of submersed vegetal substrate in different depths of water column were done to evaluate the benthic community structure in three habitats of the Balbina hydroelectric dam in 1991, 1992 and 1993. In these experiments substrate exposition periods of up to 60 and 75 days were done. The fauna associated to the standard substrate (Mabea caudata) belonged to seven phyla: Arthropoda, Coelenterata, Nematoda, Bryozoa, Annelida, Mollusca an Chordata. The most abundant and frequent families, during the studied period, were Naididae (Tubificida), Chydoridae (Cladocera) and Cenestheridae (Conchostraca), suggesting the persistence of these groups. In general, the pattern of colonization indicates some tendency to increase gradually with time of exposition of the substrate in the environment. Probably, the discontinuity of the tendencies is associated with the insects mobility and emergence. The initial colonization always was higher and quicker in the margin habitat, which indicates that the source of organisms is this habitat. This is due to better conditions of the environment such as availability of food and protection, associated with the submerged vegetation and wood. The community mean density during this study was 7, 312 ind/m{sup 2}. The density, the species richness index, and the diversity were correlated with abiotic variables such as pH, temperature, dissolved oxygen, habitat and depth. Also, the density was correlated with total carbon and ammonium. Species richness was correlated with total carbon, ammonium and water color. The density, diversity and species richness were proportionally inverse to depth of the habitats and total absence of organisms ago 10 meter of depth, different from what is found in bottom of natural environments. This fact was attributed to the high concentration of nutrients, such as ammonium and dissolved iron, to the existence of toxic gases such a sulphide, and to the conditions of hypoxia in the deep

  6. Invasive species and biodiversity crises: testing the link in the late devonian.

    Directory of Open Access Journals (Sweden)

    Alycia L Stigall

    Full Text Available During the Late Devonian Biodiversity Crisis, the primary driver of biodiversity decline was the dramatic reduction in speciation rates, not elevated extinction rates; however, the causes of speciation decline have been previously unstudied. Speciation, the formation of new species from ancestral populations, occurs by two primary allopatric mechanisms: vicariance, where the ancestral population is passively divided into two large subpopulations that later diverge and form two daughter species, and dispersal, in which a small subset of the ancestral population actively migrates then diverges to form a new species. Studies of modern and fossil clades typically document speciation by vicariance in much higher frequencies than speciation by dispersal. To assess the mechanism behind Late Devonian speciation reduction, speciation rates were calculated within stratigraphically constrained species-level phylogenetic hypotheses for three representative clades and mode of speciation at cladogenetic events was assessed across four clades in three phyla: Arthropoda, Brachiopoda, and Mollusca. In all cases, Devonian taxa exhibited a congruent reduction in speciation rate between the Middle Devonian pre-crisis interval and the Late Devonian crisis interval. Furthermore, speciation via vicariance is almost entirely absent during the crisis interval; most episodes of speciation during this time were due to dispersal. The shutdown of speciation by vicariance during this interval was related to widespread interbasinal species invasions. The lack of Late Devonian vicariance is diametrically opposed to the pattern observed in other geologic intervals, which suggests the loss of vicariant speciation attributable to species invasions during the Late Devonian was a causal factor in the biodiversity crisis. Similarly, modern ecosystems, in which invasive species are rampant, may be expected to exhibit similar shutdown of speciation by vicariance as an outcome of the

  7. A new view of insect-crustacean relationships I. Inferences from neural cladistics and comparative neuroanatomy.

    Science.gov (United States)

    Strausfeld, Nicholas J; Andrew, David R

    2011-05-01

    Traditional hypotheses regarding the relationships of the major arthropod lineages focus on suites of comparable characters, often those that address features of the exoskeleton. However, because of the enormous morphological variety among arthropods, external characters may lead to ambiguities of interpretation and definition, particularly when species have undergone evolutionary simplification and reversal. Here we present the results of a cladistic analysis using morphological characters associated with brains and central nervous systems, based on the evidence that cerebral organization is generally robust over geological time. Well-resolved, strongly supported phylogenies were obtained from a neuromorphological character set representing a variety of discrete neuroanatomical traits. Phylogenetic hypotheses from this analysis support many accepted relationships, including monophyletic Chelicerata, Myriapoda, and Hexapoda, paraphyletic Crustacea and the union of Hexapoda and Crustacea (Tetraconata). They also support Mandibulata (Myriapoda + Tetraconata). One problematic result, which can be explained by symplesiomorphies that are likely to have evolved in deep time, is the inability to resolve Onychophora as a taxon distinct from Arthropoda. Crucially, neuronal cladistics supports the heterodox conclusion that both Hexapoda and Malacostraca are derived from a common ancestor that possessed a suite of discrete neural centers comprising an elaborate brain. Remipedes and copepods, both resolved as basal to Branchiopoda share a neural ground pattern with Malacostraca. These findings distinguish Hexapoda (Insecta) from Branchiopoda, which is the sister group of the clade Malacostraca + Hexapoda. The present study resolves branchiopod crustaceans as descendents of an ancestor with a complex brain, which means that they have evolved secondary simplification and the loss or reduction of numerous neural systems. PMID:21333750

  8. The complete mitochondrial genome sequence of the spider habronattus oregonensis reveals rearranged and extremely truncated tRNAs

    International Nuclear Information System (INIS)

    We sequenced the entire mitochondrial genome of the jumping spider Habronattus oregonensis of the arachnid order Araneae (Arthropoda: Chelicerata). A number of unusual features distinguish this genome from other chelicerate and arthropod mitochondrial genomes. Most of the transfer RNA gene sequences are greatly reduced in size and cannot be folded into typical cloverleaf-shaped secondary structures. At least nine of the tRNA sequences lack the potential to form TYC arm stem pairings, and instead are inferred to have TV-replacement loops. Furthermore, sequences that could encode the 3' aminoacyl acceptor stems in at least 10 tRNAs appear to be lacking, because fully paired acceptor stems are not possible and because the downstream sequences instead encode adjacent genes. Hence, these appear to be among the smallest known tRNA genes. We postulate that an RNA editing mechanism must exist to restore the 3' aminoacyl acceptor stems in order to allow the tRNAs to function. At least seven tRN As are rearranged with respect to the chelicerate Limulus polyphemus, although the arrangement of the protein-coding genes is identical. Most mitochondrial protein-coding genes of H. oregonensis have ATN as initiation codons, as commonly found in arthropod mtDNAs, but cytochrome oxidase subunit 2 and 3 genes apparently use UUG as an initiation codon. Finally, many of the gene sequences overlap one another and are truncated. This 14,381 bp genome, the first mitochondrial genome of a spider yet sequenced, is one of the smallest arthropod mitochondrial genomes known. We suggest that post transcriptional RNA editing can likely maintain function of the tRNAs while permitting the accumulation of mutations that would otherwise be deleterious. Such mechanisms may have allowed for the minimization of the spider mitochondrial genome

  9. 应用GIS制作Coringa红树林物种分布图%Application of GIS in the Preparation of Species Distributional Maps for Coringa Mangroves Based on Ground Truth Data

    Institute of Scientific and Technical Information of China (English)

    B.Satyanarayana; A.V.Raman; 张秀英; 冯学智; F.Dehairs

    2004-01-01

    Coringa野生保护区是印度东海岸第二大红树林保护区.采用PCQM(Point Centered Quarter Meth-od)方法获取了该区红树林树木底面积数据Arcinfo 8.1制作物种密度分布图,结果显示,该区红树林植物有15种,分属8个科10个属,动物则包括7个门(Arthropda,Mollusca,Pisces,Amphibia,Reptiles,Aves andMammals).在15种红树林植物中,Avicennia marina,A.officinalis和Excoecaria agallocha是保护区中分布最广泛的种类,他们的分布密度随盐度的变化而变化,Rhizophora apiculata和R.mucronata则被限制在该区沿海边缘地带.%Coringa wildlife sanctuary is the second largest mangrove formation on the east coast of India with its rich floral and faunal biodiversity.The total number of floral species is composed of 15(8 families and 10 genera)conile fauna represented by 7 diverse groups such as Arthropoda,Mollusca,Pisces,Amphibia,Reptiles,Aves and Mammals.Out of 15 mangrove plant species,Avicennia marina ,A.o fficinalis and Excoecaria agallocha are the most widely distributed species within the sanctuary representing their wide tolerance capacity towards varying salinity ranges.Rhizophora apiculata and R.mucronata are mostly confined to the seaward fringes in this region.During present study,an attempt was made to prepare the species level distributional maps for the above said plant communities with the help of Arc Map 8.1 based on basal area(m2 per 0.1 hm2)estimations derived from PCQM(Point Cen-tered Quarter Method).

  10. Macro- and megafauna recorded in the submarine Bari Canyon (southern Adriatic, Mediterranean Sea using different tools

    Directory of Open Access Journals (Sweden)

    G. D'ONGHIA

    2015-01-01

    Full Text Available Macro- and megafauna were recorded in the submarine Bari Canyon (southern Adriatic Sea, Mediterranean Sea during an oceanographic cruise carried out in May-June 2012 and an experimental fishing survey conducted in November 2013. During the former, a total of 20 benthic samples were taken using a Van Veen grab at depths between 268 and 770 m and 4 deployments of a baited lander, for about 43 hours of video records, were carried out at depths between 443 and 788 m. During the latter, 8 longline fishing operations were conducted from 338 down to 612 m. Eighty-five living benthic and benthopelagic species were recorded: 29 Porifera, 1 Cnidaria, 2 Mollusca, 11 Annelida, 1 Arthropoda, 19 Bryozoa, 3 Echinodermata and 19 Chordata. A total of 51 species are new records for the Bari Canyon, 29 new records for the Adriatic Sea. Among the Porifera Cerbaris curvispiculifer is a new addition for the Italian Sponge Fauna. The first certain record of living specimens for the bryozoan Crisia tenella longinodata is reported. A total of 6 Mediterranean endemic species have been identified: 4 Porifera and 2 Annelida. The bathymetric range of some species has been extended. New information acquired for deep sea species confirms their importance in the structure of cold-water coral communities. This study has updated the knowledge on the biodiversity of the Adriatic Sea, as well as of the Bari Canyon in particular, one of the sites designated as “jewels of the Mediterranean” for which urgent conservation measures are needed.

  11. Study on the Restoration of Animals on the Slope Green Belt of Shaoguan-Ganzhou Highway%韶赣高速公路边坡绿化带动物恢复的研究

    Institute of Scientific and Technical Information of China (English)

    陈建荣; 栾晓峰; 李斌; 徐剑; 郑立军

    2012-01-01

    67 species of animals are recorded on the slope green belt of Shaoguan-Canzhou highway, belonging to 34 families, 18 orders and 3 phylums. Among them there are 61 species, 29 families and 15 orders of Arthropoda, accounting for 91.04% of total species. The dominant species are Formica fusca, Atractomorpha sinensis Bol var, and Oxya chinensis. The slope green belt is not as good as natural habitats to restore the animals, but the cynodon daaylon ( L) pers and Loiium perenne L. on the slope green belt are good for the living of animals, and the smaller the side slope grade, the better. The growth of animals is obviously inhibited by Tepkrosia vogelii and Crotalaria pailida Ait.%韶赣高速公路边坡绿化带记录有3门、18目、34科、67种动物,其中节肢动物门最多,有15目、29科、61种,占91.04%,优势种为丝光褐林蚁、中华短额负蝗、中华稻蝗3种.边坡绿化带在动物恢复性方面低于自然生境,边坡绿化带种植狗牙草和黑麦草较有利于动物的生息,边坡坡度小也有利于动物的生息,而种植非洲山毛豆、猪屎豆对动物具有明显抑制作用.

  12. Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods.

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    Jerome C Regier

    Full Text Available BACKGROUND: This study aims to investigate the strength of various sources of phylogenetic information that led to recent seemingly robust conclusions about higher-level arthropod phylogeny and to assess the role of excluding or downweighting synonymous change for arriving at those conclusions. METHODOLOGY/PRINCIPAL FINDINGS: The current study analyzes DNA sequences from 68 gene segments of 62 distinct protein-coding nuclear genes for 80 species. Gene segments analyzed individually support numerous nodes recovered in combined-gene analyses, but few of the higher-level nodes of greatest current interest. However, neither is there support for conflicting alternatives to these higher-level nodes. Gene segments with higher rates of nonsynonymous change tend to be more informative overall, but those with lower rates tend to provide stronger support for deeper nodes. Higher-level nodes with bootstrap values in the 80% - 99% range for the complete data matrix are markedly more sensitive to substantial drops in their bootstrap percentages after character subsampling than those with 100% bootstrap, suggesting that these nodes are likely not to have been strongly supported with many fewer data than in the full matrix. Data set partitioning of total data by (mostly synonymous and (mostly nonsynonymous change improves overall node support, but the result remains much inferior to analysis of (unpartitioned nonsynonymous change alone. Clusters of genes with similar nonsynonymous rate properties (e.g., faster vs. slower show some distinct patterns of node support but few conflicts. Synonymous change is shown to contribute little, if any, phylogenetic signal to the support of higher-level nodes, but it does contribute nonphylogenetic signal, probably through its underlying heterogeneous nucleotide composition. Analysis of seemingly conservative indels does not prove useful. CONCLUSIONS: Generating a robust molecular higher-level phylogeny of Arthropoda is

  13. Distribution and evolution of the serine/aspartate racemase family in invertebrates.

    Science.gov (United States)

    Uda, Kouji; Abe, Keita; Dehara, Yoko; Mizobata, Kiriko; Sogawa, Natsumi; Akagi, Yuki; Saigan, Mai; Radkov, Atanas D; Moe, Luke A

    2016-02-01

    Free D-amino acids have been found in various invertebrate phyla, while amino acid racemase genes have been identified in few species. The purpose of this study is to elucidate the distribution, function, and evolution of amino acid racemases in invertebrate animals. We searched the GenBank databases, and found 11 homologous serine racemase genes from eight species in eight different invertebrate phyla. The cloned genes were identified based on their maximum activity as Acropora millepora (Cnidaria) serine racemase (SerR) and aspartate racemase (AspR), Caenorhabditis elegans (Nematoda) SerR, Capitella teleta (Annelida) SerR, Crassostrea gigas (Mollusca) SerR and AspR, Dugesia japonica (Platyhelminthes) SerR, Milnesium tardigradum (Tardigrada) SerR, Penaeus monodon (Arthropoda) SerR and AspR and Strongylocentrotus purpuratus (Echinodermata) AspR. We found that Acropora, Aplysia, Capitella, Crassostrea and Penaeus had two amino acid racemase paralogous genes and these paralogous genes have evolved independently by gene duplication at their recent ancestral species. The transcriptome analyses using available SRA data and enzyme kinetic data suggested that these paralogous genes are expressed in different tissues and have different functions in vivo. Phylogenetic analyses clearly indicated that animal SerR and AspR are not separated by their particular racemase functions and form a serine/aspartate racemase family cluster. Our results revealed that SerR and AspR are more widely distributed among invertebrates than previously known. Moreover, we propose that the triple serine loop motif at amino acid positions 150-152 may be responsible for the large aspartate racemase activity and the AspR evolution from SerR. PMID:26352274

  14. Co-evolution of SNF spliceosomal proteins with their RNA targets in trans-splicing nematodes.

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    Strange, Rex Meade; Russelburg, L Peyton; Delaney, Kimberly J

    2016-08-01

    Although the mechanism of pre-mRNA splicing has been well characterized, the evolution of spliceosomal proteins is poorly understood. The U1A/U2B″/SNF family (hereafter referred to as the SNF family) of RNA binding spliceosomal proteins participates in both the U1 and U2 small interacting nuclear ribonucleoproteins (snRNPs). The highly constrained nature of this system has inhibited an analysis of co-evolutionary trends between the proteins and their RNA binding targets. Here we report accelerated sequence evolution in the SNF protein family in Phylum Nematoda, which has allowed an analysis of protein:RNA co-evolution. In a comparison of SNF genes from ecdysozoan species, we found a correlation between trans-splicing species (nematodes) and increased phylogenetic branch lengths of the SNF protein family, with respect to their sister clade Arthropoda. In particular, we found that nematodes (~70-80 % of pre-mRNAs are trans-spliced) have experienced higher rates of SNF sequence evolution than arthropods (predominantly cis-spliced) at both the nucleotide and amino acid levels. Interestingly, this increased evolutionary rate correlates with the reliance on trans-splicing by nematodes, which would alter the role of the SNF family of spliceosomal proteins. We mapped amino acid substitutions to functionally important regions of the SNF protein, specifically to sites that are predicted to disrupt protein:RNA and protein:protein interactions. Finally, we investigated SNF's RNA targets: the U1 and U2 snRNAs. Both are more divergent in nematodes than arthropods, suggesting the RNAs have co-evolved with SNF in order to maintain the necessarily high affinity interaction that has been characterized in other species. PMID:27450547

  15. STUDI KUALITAS PERAIRAN PADA KEGIATAN BUDIDAYA TIRAM MUTIARA (Pinctada maxima DI KECAMATAN GEROKGAK, KABUPATEN BULELENG, BALI

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    apri i supi'i

    2012-11-01

    Full Text Available The purpose of this study were to know the effect of pearl oyster culture activities to the water quality(physical, chemical, biological parameters, and the sediment of culture site, waters quality status of pearloyster culture site as well.The research was done at 10 stations, which were 9 stations located around pearl oyster culture site, and1 station located at out of pearl oyster culture site (as control. Results showed that the sources of pollutionwere from pearl oyster feces and biofouling produced from cleaning of pocket and its shell. An in organicmatter of the feces produced (50.52-78.75 % was higher than the organic matter (21.25-49.48 %. The amountof biofoulling trash increased with the size and dominated by organic matter. Sea water quality observed wasunder sea water quality standard of marine organism (aquaculture decided by government, except phosphate.Twenty four species of plankton collected, consist of 4 phylum, that were Bacillarophyta (diatom,Protozoa, Arthropoda, and Mollusca. Plankton Diversity Index showed the level of low to high pollutioncondition indicated ecological suppression and decreasing of waters quality. The amount of total bacteria andVibrio spp. at all stations were normal, that was less than 106 cfu/ml.Integrated physical, chemical and biological parameters assessment found that pollution index was 2-3,mean of low pollution. Result of Cluster assessment indicate that there was real characteristic differentiationbetween first group (1-9 and second group (control. First group was around the pearl oyster culture waters,and second group was out of the pearl oyster culture waters. So the pearl oyster culture activities affected thewaters quality.

  16. Molecular cloning of hsf1 and hsbp1 cDNAs, and the expression of hsf1, hsbp1 and hsp70 under heat stress in the sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Xu, Dongxue; Sun, Lina; Liu, Shilin; Zhang, Libin; Yang, Hongsheng

    2016-08-01

    The heat shock response (HSR) is known for the elevated synthesis of heat shock proteins (HSPs) under heat stress, which is mediated primarily by heat shock factor 1 (HSF1). Heat shock factor binding protein 1 (HSBP1) and feedback control of heat shock protein 70 (HSP70) are major regulators of the activity of HSF1. We obtained full-length cDNA of genes hsf1 and hsbp1 in the sea cucumber Apostichopus japonicus, which are the second available for echinoderm (after Strongylocentrotus purpuratus), and the first available for holothurian. The full-length cDNA of hsf1 was 2208bp, containing a 1326bp open reading frame encoding 441 amino acids. The full-length cDNA of hsbp1 was 2850bp, containing a 225bp open reading frame encoding 74 amino acids. The similarities of A. japonicus HSF1 with other species are low, and much higher similarity identities of A. japonicus HSBP1 were shared. Phylogenetic trees showed that A. japonicus HSF1 and HSBP1 were clustered with sequences from S. purpuratus, and fell into distinct clades with sequences from mollusca, arthropoda and vertebrata. Analysis by real-time PCR showed hsf1 and hsbp1 mRNA was expressed constitutively in all tissues examined. The expression of hsf1, hsbp1 and hsp70 in the intestine at 26°C was time-dependent. The results of this study might provide new insights into the regulation of heat shock response in this species. PMID:26952354

  17. Ground-Dwelling Arthropod Communities of a Sky Island Mountain Range in Southeastern Arizona, USA: Obtaining a Baseline for Assessing the Effects of Climate Change.

    Science.gov (United States)

    Meyer, Wallace M; Eble, Jeffrey A; Franklin, Kimberly; McManus, Reilly B; Brantley, Sandra L; Henkel, Jeff; Marek, Paul E; Hall, W Eugene; Olson, Carl A; McInroy, Ryan; Bernal Loaiza, Emmanuel M; Brusca, Richard C; Moore, Wendy

    2015-01-01

    The few studies that have addressed past effects of climate change on species distributions have mostly focused on plants due to the rarity of historical faunal baselines. However, hyperdiverse groups like Arthropoda are vital to monitor in order to understand climate change impacts on biodiversity. This is the first investigation of ground-dwelling arthropod (GDA) assemblages along the full elevation gradient of a mountain range in the Madrean Sky Island Region, establishing a baseline for monitoring future changes in GDA biodiversity. To determine how GDA assemblages relate to elevation, season, abiotic variables, and corresponding biomes, GDA were collected for two weeks in both spring (May) and summer (September) 2011 in the Santa Catalina Mountains, Arizona, using pitfall traps at 66 sites in six distinct upland (non-riparian/non-wet canyon) biomes. Four arthropod taxa: (1) beetles (Coleoptera), (2) spiders (Araneae), (3) grasshoppers and crickets (Orthoptera), and (4) millipedes and centipedes (Myriapoda) were assessed together and separately to determine if there are similar patterns across taxonomic groups. We collected 335 species of GDA: 192/3793 (species/specimens) Coleoptera, 102/1329 Araneae, 25/523 Orthoptera, and 16/697 Myriapoda. GDA assemblages differed among all biomes and between seasons. Fifty-three percent (178 species) and 76% (254 species) of all GDA species were found in only one biome and during only one season, respectively. While composition of arthropod assemblages is tied to biome and season, individual groups do not show fully concordant patterns. Seventeen percent of the GDA species occurred only in the two highest-elevation biomes (Pine and Mixed Conifer Forests). Because these high elevation biomes are most threatened by climate change and they harbor a large percentage of unique arthropod species (11-25% depending on taxon), significant loss in arthropod diversity is likely in the Santa Catalina Mountains and other isolated

  18. Ground-Dwelling Arthropod Communities of a Sky Island Mountain Range in Southeastern Arizona, USA: Obtaining a Baseline for Assessing the Effects of Climate Change.

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    Wallace M Meyer

    Full Text Available The few studies that have addressed past effects of climate change on species distributions have mostly focused on plants due to the rarity of historical faunal baselines. However, hyperdiverse groups like Arthropoda are vital to monitor in order to understand climate change impacts on biodiversity. This is the first investigation of ground-dwelling arthropod (GDA assemblages along the full elevation gradient of a mountain range in the Madrean Sky Island Region, establishing a baseline for monitoring future changes in GDA biodiversity. To determine how GDA assemblages relate to elevation, season, abiotic variables, and corresponding biomes, GDA were collected for two weeks in both spring (May and summer (September 2011 in the Santa Catalina Mountains, Arizona, using pitfall traps at 66 sites in six distinct upland (non-riparian/non-wet canyon biomes. Four arthropod taxa: (1 beetles (Coleoptera, (2 spiders (Araneae, (3 grasshoppers and crickets (Orthoptera, and (4 millipedes and centipedes (Myriapoda were assessed together and separately to determine if there are similar patterns across taxonomic groups. We collected 335 species of GDA: 192/3793 (species/specimens Coleoptera, 102/1329 Araneae, 25/523 Orthoptera, and 16/697 Myriapoda. GDA assemblages differed among all biomes and between seasons. Fifty-three percent (178 species and 76% (254 species of all GDA species were found in only one biome and during only one season, respectively. While composition of arthropod assemblages is tied to biome and season, individual groups do not show fully concordant patterns. Seventeen percent of the GDA species occurred only in the two highest-elevation biomes (Pine and Mixed Conifer Forests. Because these high elevation biomes are most threatened by climate change and they harbor a large percentage of unique arthropod species (11-25% depending on taxon, significant loss in arthropod diversity is likely in the Santa Catalina Mountains and other isolated

  19. The infauna of three widely distributed sponge species (Hexactinellida and Demospongiae) from the deep Ekström Shelf in the Weddell Sea, Antarctica

    Science.gov (United States)

    Kersken, Daniel; Göcke, Christian; Brandt, Angelika; Lejzerowicz, Franck; Schwabe, Enrico; Anna Seefeldt, Meike; Veit-Köhler, Gritta; Janussen, Dorte

    2014-10-01

    Due to their high abundance and large body size sponges have a central position in Antarctic zoobenthos, where they form the most extensive sponge grounds of the world. Though research on Antarctic benthos communities is quite established, research on sponge-associated infauna communities is scarce. We analyzed associated infauna of fifteen individuals of the sponge species Mycale (Oxymycale) acerata Kirkpatrick, 1907 (Demospongiae: Mycalina), Rossella antarctica Carter, 1872 and R. racovitzae Topsent, 1901 (both Hexactinellida: Lyssacinosida). Samples were collected from the deep Ekström Shelf at 602 m in the South-Eastern Weddell Sea, Antarctica, during the ANT XXIV-2 (SYSTCO I) expedition of RV Polarstern. The number of species, α- and β-diversity and the significantly different species composition of infauna communities related to sponge species were calculated, the latter via cluster analysis. The sponge-associated infauna consisted of five phyla: Foraminifera, Nematoda, Polychaeta, Mollusca and Arthropoda. In total 11,463 infaunal specimens were extracted and we found at least 76 associated species. Highest values of α-diversity were calculated for a sample of R. antarctica with a Shannon-Index of 1.84 and Simpson-Index of 0.72 respectively. Our results of the cluster-analysis show significant differences between infauna communities and a unique species composition for single sponge species. Polychaetes of the genus Syllis Lamarck, 1818 were numerous in M. acerata and genera like Pionosyllis Malmgren, 1867 and Cirratulus Lamarck, 1801 were numerous in R. antarctica. Individuals of the amphipod species Seba cf. dubia Schellenberg, 1926 were often found in R. antarctica and R. racovitzae while Colomastix fissilingua Schellenberg, 1926 was frequent in samples of M. acerata. Molluscs were present in M. acerata and R. antarctica but absent in R. racovitzae.

  20. Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology.

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    Giribet, G; Distel, D L; Polz, M; Sterrer, W; Wheeler, W C

    2000-09-01

    Triploblastic relationships were examined in the light of molecular and morphological evidence. Representatives for all triploblastic "phyla" (except Loricifera) were represented by both sources of phylogenetic data. The 18S ribosomal (rDNA) sequence data for 145 terminal taxa and 276 morphological characters coded for 36 supraspecific taxa were combined in a total evidence regime to determine the most consistent picture of triploblastic relationships for these data. Only triploblastic taxa are used to avoid rooting with distant outgroups, which seems to happen because of the extreme distance that separates diploblastic from triploblastic taxa according to the 18S rDNA data. Multiple phylogenetic analyses performed with variable analysis parameters yield largely inconsistent results for certain groups such as Chaetognatha, Acoela, and Nemertodermatida. A normalized incongruence length metric is used to assay the relative merit of the multiple analyses. The combined analysis having the least character incongruence yields the following scheme of relationships of four main clades: (1) Deuterostomia [((Echinodermata + Enteropneusta) (Cephalochordata (Urochordata + Vertebrata)))]; (2) Ecdysozoa [(((Priapulida + Kinorhyncha) (Nematoda + Nematomorpha)) ((Onychophora + Tardigrada) Arthropoda))]; (3) Trochozoa [((Phoronida + Brachiopoda) (Entoprocta (Nemertea (Sipuncula (Mollusca (Pogonophora (Echiura + Annelida)))))))]; and (4) Platyzoa [((Gnathostomulida (Cycliophora + Syndermata)) (Gastrotricha + Plathelminthes))]. Chaetognatha, Nemertodermatida, and Bryozoa cannot be assigned to any one of these four groups. For the first time, a data analysis recognizes a clade of acoelomates, the Platyzoa (sensu Cavalier-Smith, Biol. Rev. 73:203-266, 1998). Other relationships that corroborate some morphological analyses are the existence of a clade that groups Gnathostomulida + Syndermata (= Gnathifera), which is expanded to include the enigmatic phylum Cycliophora, as sister group

  1. Cloning and Functional Analysis of Histones H3 and H4 in Nuclear Shaping during Spermatogenesis of the Chinese Mitten Crab, Eriocheir sinensis.

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    Jiang-Li Wu

    Full Text Available During spermatogenesis in most animals, the basic proteins associated with DNA are continuously changing and somatic-typed histones are partly replaced by sperm-specific histones, which are then successively replaced by transition proteins and protamines. With the replacement of sperm nuclear basic proteins, nuclei progressively undergo chromatin condensation. The Chinese Mitten Crab (Eriocheir sinensis is also known as the hairy crab or river crab (phylum Arthropoda, subphylum Crustacea, order Decapoda, and family Grapsidae. The spermatozoa of this species are aflagellate, and each has a spherical acrosome surrounded by a cup-shaped nucleus, peculiar to brachyurans. An interesting characteristic of the E. sinensis sperm nucleus is its lack of electron-dense chromatin. However, its formation is not clear. In this study, sequences encoding histones H3 and H4 were cloned by polymerase chain reaction amplification. Western blotting indicated that H3 and H4 existed in the sperm nuclei. Immunofluorescence and ultrastructural immunocytochemistry demonstrated that histones H3 and H4 were both present in the nuclei of spermatogonia, spermatocytes, spermatids and mature spermatozoa. The nuclear labeling density of histone H4 decreased in sperm nuclei, while histone H3 labeling was not changed significantly. Quantitative real-time PCR showed that the mRNA expression levels of histones H3 and H4 were higher at mitotic and meiotic stages than in later spermiogenesis. Our study demonstrates that the mature sperm nuclei of E. sinensis contain histones H3 and H4. This is the first report that the mature sperm nucleus of E. sinensis contains histones H3 and H4. This finding extends the study of sperm histones of E. sinensis and provides some basic data for exploring how decapod crustaceans form uncondensed sperm chromatin.

  2. The complete mitochondrial genome of Pauropus longiramus (Myriapoda: Pauropoda): implications on early diversification of the myriapods revealed from comparative analysis.

    Science.gov (United States)

    Dong, Yan; Sun, Hongying; Guo, Hua; Pan, Da; Qian, Changyuan; Hao, Sijing; Zhou, Kaiya

    2012-08-15

    Myriapods are among the earliest arthropods and may have evolved to become part of the terrestrial biota more than 400 million years ago. A noticeable lack of mitochondrial genome data from Pauropoda hampers phylogenetic and evolutionary studies within the subphylum Myriapoda. We sequenced the first complete mitochondrial genome of a microscopic pauropod, Pauropus longiramus (Arthropoda: Myriapoda), and conducted comprehensive mitogenomic analyses across the Myriapoda. The pauropod mitochondrial genome is a circular molecule of 14,487 bp long and contains the entire set of thirty-seven genes. Frequent intergenic overlaps occurred between adjacent tRNAs, and between tRNA and protein-coding genes. This is the first example of a mitochondrial genome with multiple intergenic overlaps and reveals a strategy for arthropods to effectively compact the mitochondrial genome by overlapping and truncating tRNA genes with neighbor genes, instead of only truncating tRNAs. Phylogenetic analyses based on protein-coding genes provide strong evidence that the sister group of Pauropoda is Symphyla. Additionally, approximately unbiased (AU) tests strongly support the Progoneata and confirm the basal position of Chilopoda in Myriapoda. This study provides an estimation of myriapod origins around 555 Ma (95% CI: 444-704 Ma) and this date is comparable with that of the Cambrian explosion and candidate myriapod-like fossils. A new time-scale suggests that deep radiations during early myriapod diversification occurred at least three times, not once as previously proposed. A Carboniferous origin of pauropods is congruent with the idea that these taxa are derived, rather than basal, progoneatans. PMID:22659693

  3. Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote species.

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    Emese Meglécz

    Full Text Available Microsatellites are ubiquitous in Eukaryotic genomes. A more complete understanding of their origin and spread can be gained from a comparison of their distribution within a phylogenetic context. Although information for model species is accumulating rapidly, it is insufficient due to a lack of species depth, thus intragroup variation is necessarily ignored. As such, apparent differences between groups may be overinflated and generalizations cannot be inferred until an analysis of the variation that exists within groups has been conducted. In this study, we examined microsatellite coverage and motif patterns from 454 shotgun sequences of 154 Eukaryote species from eight distantly related phyla (Cnidaria, Arthropoda, Onychophora, Bryozoa, Mollusca, Echinodermata, Chordata and Streptophyta to test if a consistent phylogenetic pattern emerges from the microsatellite composition of these species. It is clear from our results that data from model species provide incomplete information regarding the existing microsatellite variability within the Eukaryotes. A very strong heterogeneity of microsatellite composition was found within most phyla, classes and even orders. Autocorrelation analyses indicated that while microsatellite contents of species within clades more recent than 200 Mya tend to be similar, the autocorrelation breaks down and becomes negative or non-significant with increasing divergence time. Therefore, the age of the taxon seems to be a primary factor in degrading the phylogenetic pattern present among related groups. The most recent classes or orders of Chordates still retain the pattern of their common ancestor. However, within older groups, such as classes of Arthropods, the phylogenetic pattern has been scrambled by the long independent evolution of the lineages.

  4. Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation.

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    Stéphane Uroz

    Full Text Available In temperate ecosystems, acidic forest soils are among the most nutrient-poor terrestrial environments. In this context, the long-term differentiation of the forest soils into horizons may impact the assembly and the functions of the soil microbial communities. To gain a more comprehensive understanding of the ecology and functional potentials of these microbial communities, a suite of analyses including comparative metagenomics was applied on independent soil samples from a spruce plantation (Breuil-Chenue, France. The objectives were to assess whether the decreasing nutrient bioavailability and pH variations that naturally occurs between the organic and mineral horizons affects the soil microbial functional biodiversity. The 14 Gbp of pyrosequencing and Illumina sequences generated in this study revealed complex microbial communities dominated by bacteria. Detailed analyses showed that the organic soil horizon was significantly enriched in sequences related to Bacteria, Chordata, Arthropoda and Ascomycota. On the contrary the mineral horizon was significantly enriched in sequences related to Archaea. Our analyses also highlighted that the microbial communities inhabiting the two soil horizons differed significantly in their functional potentials according to functional assays and MG-RAST analyses, suggesting a functional specialisation of these microbial communities. Consistent with this specialisation, our shotgun metagenomic approach revealed a significant increase in the relative abundance of sequences related glycoside hydrolases in the organic horizon compared to the mineral horizon that was significantly enriched in glycoside transferases. This functional stratification according to the soil horizon was also confirmed by a significant correlation between the functional assays performed in this study and the functional metagenomic analyses. Together, our results suggest that the soil stratification and particularly the soil resource

  5. Post larval, short-term, colonization patterns: The effect of substratum complexity across subtidal, adjacent, habitats

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    García-Sanz, Sara; Tuya, Fernando; Navarro, Pablo G.; Angulo-Preckler, Carlos; Haroun, Ricardo J.

    2012-10-01

    Benthic habitats are colonized by organisms from the water column and adjacent habitats. There are, however, variations in the 'acceptability' of any habitat to potential colonists. We assessed whether the structural complexity of artificial substrata affected patterns of short-term colonization of post larval faunal assemblages across subtidal habitats within a coastal landscape. Specifically, we tested whether short-term colonization patterns on 3 types of artificial substrata encompassing a range of complexities, including a leaf-like unit, a cushion-shaped leaf-like unit and a cushion-shaped unit, were consistent across 4 adjacent habitats: macroalgal-dominated bottoms, urchin-grazed barrens, seagrass meadows and sandy patches, at Gran Canaria (eastern Atlantic). A total of 16,174 organisms were collected after 4 weeks and 4 taxonomic groups (Crustacea, Chordata, Echinodermata and Mollusca) dominated the assemblage. Despite considerable among-taxa variability being observed in response to habitat effects, the total abundance of colonizers, as well as the abundance of Arthropoda, Chordata and Echinodermata, was affected by the habitat where collectors were deployed, but did not differ among types of collectors. Similarly, the assemblage structure of colonizers was mainly affected by the habitat, but not by the type of collector; habitat contributed to explain most variation in the assemblage structure of the four dominant taxonomic groups (from ca. 5.44-19.23%), and obscured, in all cases, variation explained by the type of collector. As a result, the variation in short-term colonization patterns of faunal assemblages into artificial collectors was mostly affected by variation associated with habitats rather than by differences in the structural complexity of collectors. The largest abundances of colonizers, particularly Echinodermata, were found on sandy patches relative to other habitats, suggesting that the 'availability', rather than any particular attribute

  6. PCR survey of 50 introns in animals: cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla.

    Science.gov (United States)

    Gérard, K; Guilloton, E; Arnaud-Haond, S; Aurelle, D; Bastrop, R; Chevaldonné, P; Derycke, S; Hanel, R; Lapègue, S; Lejeusne, C; Mousset, S; Ramšak, A; Remerie, T; Viard, F; Féral, J-P; Chenuil, A

    2013-12-01

    Exon Primed Intron Crossing (EPIC) markers provide molecular tools that are susceptible to be variable within species while remaining amplifiable by PCR using potentially universal primers. In this study we tested the possibility of obtaining PCR products from 50 EPIC markers on 23 species belonging to seven different phyla (Porifera, Cnidaria, Arthropoda, Nematoda, Mollusca, Annelida, Echinodermata) using 70 new primer pairs. A previous study had identified and tested those loci in a dozen species, including another phylum, Urochordata (Chenuil et al., 2010). Results were contrasted among species. The best results were achieved with the oyster (Mollusca) where 28 loci provided amplicons susceptible to contain an intron according to their size. This was however not the case with the other mollusk Crepidula fornicata, which seems to have undergone a reduction in intron number or intron size. In the Porifera, 13 loci appeared susceptible to contain an intron, a surprisingly high number for this phylum considering its phylogenetic distance with genomic data used to design the primers. For two cnidarian species, numerous loci (24) were obtained. Ecdysozoan phyla (arthropods and nematodes) proved less successful than others as expected considering reports of their rapid rate of genome evolution and the worst results were obtained for several arthropods. Some general patterns among phyla arose, and we discuss how the results of this EPIC survey may give new insights into genome evolution of the study species. This work confirms that this set of EPIC loci provides an easy-to-use toolbox to identify genetic markers potentially useful for population genetics, phylogeography or phylogenetic studies for a large panel of metazoan species. We then argue that obtaining diploid sequence genotypes for these loci became simple and affordable owing to Next-Generation Sequencing development. Species surveyed in this study belong to several genera (Acanthaster, Alvinocaris, Aplysina

  7. A “Rosetta Stone” for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)

    Science.gov (United States)

    Bucklin, Ann; Ortman, Brian D.; Jennings, Robert M.; Nigro, Lisa M.; Sweetman, Christopher J.; Copley, Nancy J.; Sutton, Tracey; Wiebe, Peter H.

    2010-12-01

    Species diversity of the metazoan holozooplankton assemblage of the Sargasso Sea, Northwest Atlantic Ocean, was examined through coordinated morphological taxonomic identification of species and DNA sequencing of a ˜650 base-pair region of mitochondrial cytochrome oxidase I (mtCOI) as a DNA barcode (i.e., short sequence for species recognition and discrimination). Zooplankton collections were made from the surface to 5,000 meters during April, 2006 on the R/V R.H. Brown. Samples were examined by a ship-board team of morphological taxonomists; DNA barcoding was carried out in both ship-board and land-based DNA sequencing laboratories. DNA barcodes were determined for a total of 297 individuals of 175 holozooplankton species in four phyla, including: Cnidaria (Hydromedusae, 4 species; Siphonophora, 47); Arthropoda (Amphipoda, 10; Copepoda, 34; Decapoda, 9; Euphausiacea, 10; Mysidacea, 1; Ostracoda, 27); and Mollusca (Cephalopoda, 8; Heteropoda, 6; Pteropoda, 15); and Chaetognatha (4). Thirty species of fish (Teleostei) were also barcoded. For all seven zooplankton groups for which sufficient data were available, Kimura-2-Parameter genetic distances were significantly lower between individuals of the same species (mean=0.0114; S.D. 0.0117) than between individuals of different species within the same group (mean=0.3166; S.D. 0.0378). This difference, known as the barcode gap, ensures that mtCOI sequences are reliable characters for species identification for the oceanic holozooplankton assemblage. In addition, DNA barcodes allow recognition of new or undescribed species, reveal cryptic species within known taxa, and inform phylogeographic and population genetic studies of geographic variation. The growing database of "gold standard" DNA barcodes serves as a Rosetta Stone for marine zooplankton, providing the key for decoding species diversity by linking species names, morphology, and DNA sequence variation. In light of the pivotal position of zooplankton in ocean

  8. Distribution of Asellus aquaticus and microinvertebrates in a non-chlorinated drinking water supply system--effects of pipe material and sedimentation.

    Science.gov (United States)

    Christensen, Sarah C B; Nissen, Erling; Arvin, Erik; Albrechtsen, Hans-Jørgen

    2011-05-01

    Danish drinking water supplies based on ground water without chlorination were investigated for the presence of the water louse, Asellus aquaticus, microinvertebrates (water samples were collected from fire hydrants at 31 locations, and two elevated tanks (6000 and 36,000 m(3)) as well as one clean water tank at a waterworks (700 m(3)) were inspected. Several types of invertebrates from the phyla: arthropoda, annelida (worms), plathyhelminthes (flatworms) and mollusca (snails) were found. Invertebrates were found at 94% of the sampling sites in the piped system with A. aquaticus present at 55% of the sampling sites. Populations of A. aquaticus were present in the two investigated elevated tanks but not in the clean water tank at a waterworks. Both adult and juvenile A. aquaticus (length of 2-10 mm) were found in tanks as well as in pipes. A. aquaticus was found only in samples collected from two of seven investigated distribution zones (zone 1 and 2), each supplied directly by one of the two investigated elevated tanks containing A. aquaticus. Microinvertebrates were distributed throughout all zones. The distribution pattern of A. aquaticus had not changed considerably over 20 years when compared to data from samples collected in 1988-89. Centrifugal pumps have separated the distribution zones during the whole period and may have functioned as physical barriers in the distribution systems, preventing large invertebrates such as A. aquaticus to pass alive. Another factor characterising zone 1 and 2 was the presence of cast iron pipes. The frequency of A. aquaticus was significantly higher in cast iron pipes than in plastic pipes. A. aquaticus caught from plastic pipes were mainly single living specimens or dead specimens, which may have been transported passively trough by the water flow, while cast iron pipes provided an environment suitable for relatively large populations of A. aquaticus. Sediment volume for each sample was measured and our study described for

  9. RICKETTSIAL DISEASES: RISK FOR INDONESIA

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    Allen L. Richards

    2012-09-01

    dan penyakit yang menyerupai Rickettsia, serta monositik dan granulositik ehrlichiosis pada manusia, menunjukkan hasil yang baik. Ehrlichiosis pada manusia merupakan penyakit baru yang tidak diketahui penyebarannya di seluruh dunia, sangat mungkin ditularkan oleh "tick". Walaupun umumnya dapat sembuh sendiri, angka kematian ehrlichiosis dilaporkan mencapai 2-10%. Sebagian besar penyakit rickettsia dan penyakit yang menyerupai rickettsia tersebut di atas belum dikaji secara intensif di Asia Tenggara. Walaupun masih terbatas, di Indonesia sudah dilakukan penelitian-penelitian tentang "scrub typhus" dan "murine typhus." Sedangkan penyakit-penyakit yang ada hubungan dengan kutu penyebar Rickettsia seperti "tick typhus" atau "spottedfever", "trench fever", bartonellosis, "Q fever", dan ehrlichiosis masih terabaikan di Indonesia. Tinjauan ini bertujuan untuk memperkenalkan hasil-hasil penelitian tentang penyakit-penyakit rickettsia di Indonesia, dan memperlihatkan berberapa penyakit yang penyebarannya sekarang telah diketahui disebabkan oleh arthropoda.

  10. Characteristics of Karst Ecosystems of Vietnam and Their Vulnerability to Human Impact

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Karst in Vietnam covers an area of about 60,000 km2, i.e. 18 % of the surface of the country. The country has an annual average temperature of 24 ℃, an annual average rainfall of 2300 mm and a relative humidity of about 90%. Karst in Vietnam is typified by peak cluster-depression landscapes ranging in elevation from 200 to over 2000 m. Tower and coastal karst landscapes also exit. Because of naturally favourable conditions, karst ecosystems are diverse and very rich.Higher plants (cormophytes) are abundant. They are represented by approximately 2000 species, 908 genera, 224 families,86 orders and 7 phyla. They form a thick vegetation cover of evergreen tropical rainforest. Knowledge about lower plants is limited. The fauna is rich and diverse. Phyla such as Protozoa, Vermes, Mollusca and Arthropoda are yet ill known.Preliminary results show that the phylum Chordata is represented by 541 species from 80 families, 40 orders and 5 classes.There exist many precious and rare mammals, in particular some endemic species such as Trachypithecuspoliocephalus, T.delacouri, Rhinopithecus avanculus, Rhinolophus rouxi, Seotoma dineties and Silurus cuephuongensis. The class Insecta has about 2000 species.``The fast population growth, particularly in the mountainous areas of the country, triggers an increasing demand for land and therefore threatens the ecosystem. To obtain land for farming, people have cut, burned and destroyed natural forest cover; resulting in occurrence of hazards such as soil-loss, water-loss, flash floods, mud-rock flows, rock-falls, severe drought, water logging and changes of karstic aquifers etc. Poaching precious animals and illegal logging are increasing. In contrast to other natural systems, karst ecosystems cannot be reestablished once damaged. Living karst landscapes will become rocky desert ones without life. Conservation of karstic environmental systems in general and karstic ecosystems in particular should not be the sole vocation of scientists

  11. Community characteristics of macrobenthos in the Huanghe (Yellow River) Estuary during water and sediment discharge regulation

    Institute of Scientific and Technical Information of China (English)

    REN Zhonghua; LI Fan; WEI Jiali; LI Shaowen; LV Zhenbo; GAO Yanjie; CONG Xuri

    2016-01-01

    The community characteristics of macrobenthos in the Huanghe (Yellow River) Estuary is influenced by a combination of natural and anthropogenic factors. Here, we investigated short-term changes (1-month) in macrobenthic community structure in response to water and sediment discharge regulation (WSDR) in 2011. Specifically, we sampled the macrobenthos at 18 sampling stations situated at four distances (5, 10, 20, and 40 km) from the mouth of the Huanghe Estuary before (mid-June), during (early-July), and after (mid-July) WSDR. The results showed that a total of 73, 72, and 85 species were collected before, during, and after WSDR, respectively. Then, 13, 1, and 16 dominant species were detected at this three periods. Four phyla were primarily detected at all three periods (Annelida, Mollusca, Arthropoda, and Echinodermata). However, while Mollusca and Annelida were the most important phyla in our study, Echinodermata and Annelida were the most important phyla in 1982, demonstrating major changes to community structure over a 3-decadal period. All stations were of high quality BOPA index before WSDR, whereas two and three stations were of reduced quality BOPA index during and after WSDR, respectively. The results of ABC curves showed that had incurred disturbed conditions after human activities WSDR. Most important of all, multivariate analyses and RDA analysis indicated that the structure of the macrobenthic community was closely linked to environment factors, including that organic content factor caused the distribution of macrobenthic community mostly during WSDR, while water depth after WSDR affected the macro benthos community structure seriously, and during WSDR, the environment factor influencing it was not single, including organic content, sulfide content, Hg and As. These differences may have been due to changes in water transparency negatively impacting the growth and development of macrobenthos, due to specific life-history requirements. Our results

  12. Evolution of a novel subfamily of nuclear receptors with members that each contain two DNA binding domains

    Directory of Open Access Journals (Sweden)

    Hirai Hirohisa

    2007-02-01

    Full Text Available Abstract Background Nuclear receptors (NRs are important transcriptional modulators in metazoans which regulate transcription through binding to the promoter region of their target gene by the DNA binding domain (DBD and activation or repression of mRNA synthesis through co-regulators bound to the ligand binding domain (LBD. NRs typically have a single DBD with a LBD. Results Three nuclear receptors named 2DBD-NRs, were identified from the flatworm Schistosoma mansoni that each possess a novel set of two DBDs in tandem with a LBD. They represent a novel NR modular structure: A/B-DBD-DBD-hinge-LBD. The 2DBD-NRs form a new subfamily of NRs, VII. By database mining, 2DBD-NR genes from other flatworm species (Schmidtea mediterranea and Dugesia japonica, from Mollusks (Lottia gigantean and from arthropods (Daphnia pulex were also identified. All 2DBD-NRs possess a P-box sequence of CEACKK in the first DBD, which is unique to 2DBD-NRs, and a P-box sequence of CEGCKG in the second DBD. Phylogenetic analyses of both DBD and ligand binding domain sequences showed that 2DBD-NR genes originate from a common two DBD-containing ancestor gene. A single 2DBD-NR orthologue was found in Arthropoda, Platyhelminths and Mollusca. Subsequent 2DBD-NR gene evolution in Mollusks and Platyhelminths involved gene duplication. Chromosome localization of S. mansoni 2DBD-NR genes by Fluorescent in situ hybridization (FISH suggests that 2DBD-NR genes duplicated on different chromosomes in the Platyhelminths. Dimerization of Sm2DBDα indicates that 2DBD-NRs may act as homodimers, suggesting either that two repeats of a half-site are necessary for each DBD of 2DBD-NRs to bind to its target gene, or that each 2DBD-NR can recognize multiple sites. Conclusion 2DBD-NRs share a common ancestor gene which possessed an extra DBD that likely resulted from a recombination event. After the split of the Arthropods, Mollusks and Platyhelminths, 2DBD-NR underwent a recent duplication in a

  13. Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus microplus

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    Tateno Yoshio

    2011-06-01

    Full Text Available Abstract Background MicroRNAs (miRNAs are small non-coding RNAs that act as regulators of gene expression in eukaryotes modulating a large diversity of biological processes. The discovery of miRNAs has provided new opportunities to understand the biology of a number of species. The cattle tick, Rhipicephalus (Boophilus microplus, causes significant economic losses in cattle production worldwide and this drives us to further understand their biology so that effective control measures can be developed. To be able to provide new insights into the biology of cattle ticks and to expand the repertoire of tick miRNAs we utilized Illumina technology to sequence the small RNA transcriptomes derived from various life stages and selected organs of R. microplus. Results To discover and profile cattle tick miRNAs we employed two complementary approaches, one aiming to find evolutionary conserved miRNAs and another focused on the discovery of novel cattle-tick specific miRNAs. We found 51 evolutionary conserved R. microplus miRNA loci, with 36 of these previously found in the tick Ixodes scapularis. The majority of the R. microplus miRNAs are perfectly conserved throughout evolution with 11, 5 and 15 of these conserved since the Nephrozoan (640 MYA, Protostomian (620MYA and Arthropoda (540 MYA ancestor, respectively. We then employed a de novo computational screening for novel tick miRNAs using the draft genome of I. scapularis and genomic contigs of R. microplus as templates. This identified 36 novel R. microplus miRNA loci of which 12 were conserved in I. scapularis. Overall we found 87 R. microplus miRNA loci, of these 15 showed the expression of both miRNA and miRNA* sequences. R. microplus miRNAs showed a variety of expression profiles, with the evolutionary-conserved miRNAs mainly expressed in all life stages at various levels, while the expression of novel tick-specific miRNAs was mostly limited to particular life stages and/or tick organs. Conclusions

  14. Study on Phylogenesis of Orthoptera Inferred from MtDNA%基于线粒体基因对直翅目昆虫系统发育学的研究

    Institute of Scientific and Technical Information of China (English)

    马婷婷; 陈光

    2011-01-01

    简要概述了线粒体基因组的结构和特点,同时基于线粒体基因组中的13个蛋白编码基因,选螳螂目、蜚蠊目、等翅目及螳脩目的5个种为外群,对直翅目34个种进行系统发育学研究.结果表明直翅目与外群分开,形成单系群.直翅目内部形成螽亚目与蝗亚目2个单系群.在螽亚目内部形成螽次亚目与蟀次亚目2个分支,且驼螽总科与螽斯总科形成姐妹群,但蚁蟋科与蝼蛄科形成1支,并不支持蟋蟀总科的单系性.在蝗亚目内部形成(蚤蝼总科+(牛蝗总科+(锥头蝗总科+蝗总科)))的系统进化关系.%The Orthoptera, belonging to the Arthropoda, is one of the largest orders among the Insecta. Mitochondrial DNA has been widely used in insect phylogenetic studies and proved to be an efficient maker in this field. This paper introduces the structure and characters of the mitochondrial genome. The phylogenetic relationships of 34 species from Orthoptera and 5 outgroup species (Mantodea, Blattaria, Isoptera, and Mantophasmatodea) were performed based on the 13 mitochondrial protein-coding genes. The monophyly of the Orthoptera is strongly supported, with its two suborders, Caelifera and Ensifera, being recovered as monophyletic respectively. Within Ensifera, it is subdivided into Grylloidea and Tet-tigonioidea. The superfamily of Rhaphidophoridae is a sister group to Tettigoniidae. The monophyly of Grylloidea is not recovered because Myrmecophilidae and Gryllotalpidae cluster together. The system evolution relationship of the superfamilies within Caelifera is formed (Tridactyloidea + ( Pneumoridea + (Pyr-gomorphoidea + Acridoidea) ) ) .

  15. Fauna epigeica em sistemas de produção de Nicotiana tabacum L.

    Directory of Open Access Journals (Sweden)

    Marta Sandra Drescher

    2011-10-01

    Full Text Available O Rio Grande do Sul detém grande relevância na produção de tabaco. Adotam-se três sistemas de manejo: convencional, mínimo e plantio direto. Para analisar o impacto desses sistemas sobre a população da fauna do solo, efetuou-se uma amostragem da fauna epigeica. Foram avaliados preparo convencional (PC, cultivo mínimo (CM e plantio direto (PD, além de área de reconversão da fumicultura para a vitivinicultura (RV e de mata nativa (MN. Na amostragem, foram utilizadas dez armadilhas Provid em cada área. Os atributos avaliados foram: abundância de organismos, riqueza, índice de diversidade (H' e equitabilidade de Shannon (J. Collembola (Arthropoda: Hexapoda foi identificada até o nível de família, devido à sua sensibilidade às modificações do ambiente. Efetuaram-se a análise multivariada de Agrupamento Hierárquico e a Análise de Componentes Principais, e os índices H' e J foram comparados pelo teste t, de Student. O PD apresentou maior número total de organismos, isolando-se das demais áreas pela análise de agrupamento hierárquico. Os valores de riqueza foram muito semelhantes entre as áreas, destacando-se a aproximação entre RV e MN. Os tratamentos PC, PD e RV não diferiram estatisticamente quanto ao H', apresentando valores de 1,58; 1,60; e 1,52, respectivamente. CM apresentou menor valor de H' (1,18 e MN, o valor intermediário (1,33. O comportamento estatístico de J foi muito semelhante ao encontrado em H'. Em relação à Classe Collembola, foram identificadas as famílias Entomobrydae, Sminthuridae, Poduridae e Hipogasturidae. PD apresentou exemplares das quatro famílias identificadas, enquanto nas demais áreas foram identificadas apenas Entomobrydae e Sminthuridae. Pela Análise de Componentes Principais (PCA, as diferenças entre as áreas explicaram 32 % da variabilidade encontrada; desse percentual, 59,3 % foram explicados pelos eixos 1 e 2. A presença ou ausência de revolvimento do solo e a rota

  16. Comparative analysis of the tardigrade feeding apparatus: adaptive convergence and evolutionary pattern of the piercing stylet system

    Directory of Open Access Journals (Sweden)

    Roberto Guidetti

    2013-03-01

    Full Text Available A thorough analysis of the cuticular parts of tardigrade feeding apparatuses was performed in order to provide a more complete understanding of their evolution and their potential homologies with other animal phyla (e.g. Cycloneuralia and Arthropoda. The buccal- pharyngeal apparatuses of eight species belonging to both Eutardigrada and Heterotardigrada were studied using light and scanning electron microscopy. This study supports and completes a previous study on the relationships between form and function in the buccalpharyngeal apparatus of eutardigrades. The common sclerified structures of the tardigrade buccal-pharyngeal apparatus are: a buccal ring connected to a straight buccal tube, a buccal crown, longitudinal thickenings within the pharynx, and a stylet system composed of piercing stylets within stylet coats, and stylet supports. Specifically, heterotardigrades (Echiniscoidea have a narrow buccal tube; long piercing stylets, each with a longitudinal groove, that cross one another before exiting the mouth; pharyngeal bars and secondary longitudinal thickenings within the pharynx. In contrast, eutardigrades have stylets which are shorter than the buccal tube; Parachela have pharyngeal apophyses and placoids within the pharynx, while Apochela lack a buccal crown and cuticular thickenings within the pharynx, the buccal tube is very wide, and the short stylets are associated with triangular-shaped stylet supports. In both classes, when the piercing stylet tips emerge from the mouth to pierce food, the buccal tube opening is almost completely obstructed, which may hinder food uptake. In heterotardigrades, the crossing of the piercing stylets may further decrease food uptake, however this disadvantage may have been reduced in echiniscids by the evolution of a long buccal tube and long stylets able to run more parallel to the buccal tube. In contrast, eutardigrades evolved different strategies. In the order Apochela and in several

  17. STUDI DAMPAK PERKEMBANGAN PEMBENIHAN IKAN LAUT TERHADAP PENURUNAN KUALITAS LINGKUNGAN DI KECAMATAN GEROKGAK KABUPATEN BULELENG

    Directory of Open Access Journals (Sweden)

    Suko Ismi

    2012-11-01

    Full Text Available The purpose of this research is to investigate influence of marine fish hatchery to degradation environmentalquality in Gerokgak District, measurement was done through physical, chemical and microbiologycal analysis.Thesample was taken from 17 stations well water, and 8 stations sea water with 2 stations coming from water discard marinefish hatchery of Gondol Orchard. Data analysis of wells water to campare with water quality standart category I and seawater comparing with the live for animal sea water according to Regulation of The Governor Bali No. 8 Year 2007. Seawater pollutan level was counted through index of diversity and integrated score, to know the resemblance physical andchemical caracteristic among station was analysis by cluster.Result of the research indicates that some parameters of wells water have passed standart water quality namely :Salinity, BOD5, nitrit, phospat, iron , mangan, copper, zink, cobalt, cadmium, dan bacteria coliform feces content. Clusteranalysis wells water if we classify into 3 groups namely first group station 2, 4, 5, 8 until 17, the location of wells 2, 4 and5 near for hatcheries but have resemblance caracteristic with wells far for hatcheries that is station 8-17. Second groupstation 3, 6 and 7 have location near hatcheries and third group station 1 only near hatcheries location. Nearness betweenstation on one group caused resemblace caracteristic, although different wells distance. Parameters sea water have passedstandart water quality namely : nitrat and phospat. Can be found 21 genus plankton from 6 phylum with composition 61%Bacillariophyta, 5% Cyanophyta, 10% Protozoa, 5% Ctenophora, 14% Arthropoda. Index diversity (H’ 0.078 – 1.968 itindicates about medium to high pollution, index uniformities (E 0,033 – 0,473 its means that uniformities low tomedium, index domination (C 0,167 – 0,974 it’s meaning have domination partial of plankton a low until high. Integrated score rate have value 4,63

  18. Avaliação da comunidade de macroinvertebrados aquáticos como ferramenta para o monitoramento de um reservatório na bacia do rio Pitangui, Paraná, Brasil

    Directory of Open Access Journals (Sweden)

    Ivana F Barbola

    2011-06-01

    Full Text Available Os macroinvertebrados bentônicos e nectônicos representam elementos importantes na estrutura e funcionamento dos ecossistemas aquáticos e sua distribuição é influenciada pela natureza química do substrato, composição da vegetação e profundidade da lâmina d'água. O conhecimento desta fauna contribui para a avaliação da qualidade da água e a elaboração de ações visando à conservação da biodiversidade. No presente estudo foram avaliadas diferentes medidas bióticas da comunidade de invertebrados da represa de Alagados, importante manancial da cidade de Ponta Grossa, no Paraná. Em cinco diferentes pontos de amostragem, foram coletados 18.473 exemplares de macroinvertebrados aquáticos ou semi-aquáticos, pertencentes a 46 táxons dos filos Annelida (Hirudinea e Oligochaeta, Mollusca (Gastropoda, Platyhelminthes (Turbellaria, Nematoda e Arthropoda (Arachnida, Crustacea e Insecta. Esta comunidade foi constituída predominantemente por organismos predadores (45,7% dos táxons amostrados, seguidos de coletores e/ou filtradores (23,9%; raspadores (15,2%, fragmentadores (13% e detritívoros (2,2%. De modo geral, os índices de diversidade (H' e equitabilidade (J foram significativamente baixos para os cinco locais investigados, com H' variando de 0,3301 a 1,0396. Quanto à tolerância dos organismos à poluição orgânica, alguns táxons mais sensíveis foram muito raros (Plecoptera ou em baixa frequência (Trichoptera e Ephemeroptera. Entre os grupos mais resistentes a ambientes poluídos estão os Chironomidae e os Hirudinea, ambos bastante comuns nas amostras de Alagados. Este estudo reforça a importância da análise de bioindicadores na avaliação da qualidade de água para consumo humano e também para a conservação de ecossistemas, considerando que um programa de monitoramento ambiental deve integrar medidas físicas, químicas e biológicas.

  19. Toxicity of Nitrate-N to Freshwater Aquatic Life and Its Water Quality Criteria%硝酸盐对淡水水生生物毒性及水质基准推导

    Institute of Scientific and Technical Information of China (English)

    张铃松; 王业耀; 孟凡生; 周岳溪; 于海斌

    2013-01-01

    为推导保护淡水水生生物的NO3-水质基准,收集了NO3-的水生生物毒性数据,然后分析了不同水生生物类群的毒性敏感性,并分别采用评价因子法、毒性百分数排序法和物种敏感度分布法进行基准值推导.结果表明,不同生物类群的水生生物对NO3-毒性的敏感性存在明显差异,其敏感性排序为节肢动物门>软体动物门>脊索动物门;甲壳纲>昆虫纲>腹足纲>双壳>两栖纲>辐鳍纲.3种基准计算方法得到的基准值存在一定差异,最终推荐采用毒性百分数排序法得出的87.97mg·L-1和5.17 mg·L-1为现阶段NO3-(以N计)的水质急性毒性和慢性毒性基准值.%The toxicity sensitivity of different freshwater aquatic organisms was analyzed using the collected toxicity data in this paper.Three methods were used to estimate the criteria of nitrate to protect the freshwater aquatic life.The results showed that the species sensitivity to nitrate followed the order of Arthropoda > Mollusca > Chordata,and Crustacea > Insecta > Gastropoda > Bivalvia >Amphibia > Actinopterygii.Moreover,the output of assessment factor method,species sensitivity distribution method and USEPA's method was significantly different.Finally,criterias of 87.97 mg·L-1 and 5.17 mg· L-1 to protect aquatic life from acute and chronic toxicity were proposed using USEPA's method.

  20. Matrotrophy and placentation in invertebrates: a new paradigm.

    Science.gov (United States)

    Ostrovsky, Andrew N; Lidgard, Scott; Gordon, Dennis P; Schwaha, Thomas; Genikhovich, Grigory; Ereskovsky, Alexander V

    2016-08-01

    Matrotrophy, the continuous extra-vitelline supply of nutrients from the parent to the progeny during gestation, is one of the masterpieces of nature, contributing to offspring fitness and often correlated with evolutionary diversification. The most elaborate form of matrotrophy-placentotrophy-is well known for its broad occurrence among vertebrates, but the comparative distribution and structural diversity of matrotrophic expression among invertebrates is wanting. In the first comprehensive analysis of matrotrophy across the animal kingdom, we report that regardless of the degree of expression, it is established or inferred in at least 21 of 34 animal phyla, significantly exceeding previous accounts and changing the old paradigm that these phenomena are infrequent among invertebrates. In 10 phyla, matrotrophy is represented by only one or a few species, whereas in 11 it is either not uncommon or widespread and even pervasive. Among invertebrate phyla, Platyhelminthes, Arthropoda and Bryozoa dominate, with 162, 83 and 53 partly or wholly matrotrophic families, respectively. In comparison, Chordata has more than 220 families that include or consist entirely of matrotrophic species. We analysed the distribution of reproductive patterns among and within invertebrate phyla using recently published molecular phylogenies: matrotrophy has seemingly evolved at least 140 times in all major superclades: Parazoa and Eumetazoa, Radiata and Bilateria, Protostomia and Deuterostomia, Lophotrochozoa and Ecdysozoa. In Cycliophora and some Digenea, it may have evolved twice in the same life cycle. The provisioning of developing young is associated with almost all known types of incubation chambers, with matrotrophic viviparity more widespread (20 phyla) than brooding (10 phyla). In nine phyla, both matrotrophic incubation types are present. Matrotrophy is expressed in five nutritive modes, of which histotrophy and placentotrophy are most prevalent. Oophagy, embryophagy and

  1. Macrobenthic fauna community in the Middle Songkhla Lake, Southern Thailand

    Directory of Open Access Journals (Sweden)

    Angsupanich, S.

    2005-02-01

    Full Text Available A bimonthly investigation of macrobenthic fauna at the area from Ban Pak Khat to Ban Leam Chong Thanon in the Inner Songkhla Lake from February 1998 to February 1999 was undertaken to determine the species richness and abundance. A total of 7 phyla and 161 species were identified. Annelida (58 species, Arthropoda (64 species and Mollusca (23 species were the major phyla while Nemertea (1 species, Platyhelminthes (1 species, Cnidaria (4 species and Chordata (10 species were the minor. Fifty-seven speciesof Polychaete annelids were found. The highest species richness (14 species was in the Nereididae Family, of which Ceratonereis burmensis and Namalycastis indica were predominant. Nephtys sp. and Heteromastus sp. were not so highly abundant but appeared at almost all stations through every sampling month, while Prionospio cirrifera and Pseudopolydora kempi were found in higher densities but with narrower distribution. Ficopomatus sp. and unidentified Terebellidae were not commonly found, but occasionally reached a high density. Amphipods gave the highest species richness (22 species, with Photis longicaudata distributed widely and in all months. Five species of Tanaidaceans were found with Apseudes sapensis the second most dominant (max. 5044 individuals m-2 in February in the overall fauna. Isopoda were not as densely found as tanaidaceans but there were many species (18 species. Cyathura sp.1 was the most dominant isopod. Brachidontes arcuatulus was the most dominant bivalve (max. 29449 individuals m-2 in April, especially at stations with a sand-gravel substrate. The mean density of total macrobenthic fauna among stations ranged from 920 to 10620 ind. m-2 while the monthly densities ranged from 1520 to 6160 ind.m-2. The mean density of macrobenthic fauna was highest in the dry season (April. The species richness among stations ranged from65 to 105 species while varying from 81 to 112 species during the different months. The highest species

  2. Assessing Biodiversity:A Heavy Task%生物多样性的评估仍是一项艰巨的工作

    Institute of Scientific and Technical Information of China (English)

    宋大祥; 周开亚

    2002-01-01

    根据现有的资料对中国和世界动物的种数作了一个初步的比较.无脊椎动物的某些门类在中国有多少种目前还不清楚,如:颚咽动物门Gnathostomula、腹毛动物门Gastrotricha、线形动物门Nematomorpha(部分)、有爪动物门Onychophora和羽鳃动物门Pterobranchia.此外,下列一些动物门类或其中的部分分类单元,在我国有关物种资源的知识也很贫乏,尚需要作进一步的深入研究,如:海绵动物门Porifera、中生动物门Metazoa、线虫动物门Nematoda、棘头动物门Acanthocephala、虫益虫动物门Echiura、须腕动物门Pogonophora、软体动物门Mollusca(部分)、腕足动物门Branchiopoda、内肛动物门Entoprocta、缓步动物门Tardigrada、五口动物门Pentastoma、节肢动物门Arthropoda(部分)和肠鳃动物门Enteropneusta.本文还对受胁动物的状况进行了讨论.无疑地,森林的破坏和动物资源的过度开发是威胁物种多样性的主要因素.此外,水的污染和富营养化使许多动物,尤其是淡水无脊椎动物面临灭绝的危险.过去数十年间,我国的动物学工作者在分类学研究和野生动物的保护方面,尤其是对珍稀种、特有种和重要的经济种的保护方面作出了巨大的努力.但是,像我国这样一个多样性大国,尚有大量的物种有待调查研究和编目.在1996年IUCN(世界自然保护联盟)出版的中,中国只有5种无脊椎动物被列为受胁物种,仅占世界受胁物种的总数(1891种)的0.26%,占美国物种总数(594种)的0.84%.实际上,全球无脊椎动物受威胁的情况同样还很不清楚,例如在该红色名录中像棘皮动物、肢口类、蛭类和涡虫类这样一些类群竟然没有列出一种是受胁的种类;像珊瑚类这样重要的类群没有列出一种灭绝种,仅仅列出2个易危种.由此,作者在文中强调指出,在物种多样性的调查、编目和红皮书的编写方面,今后的重点应放到无脊椎动

  3. Composición y abundancia de artrópodos epígeos del Parque Nacional Llanos de Challe: impactos del ENOS de 1997 y efectos del hábitat pedológico Abundance and composition of epigean arthropods from Llanos de Challe National Park: impacts of ENSO-1997 and effects of the pedological habitat

    Directory of Open Access Journals (Sweden)

    JORGE CEPEDA-PIZARRO

    2005-12-01

    Full Text Available Mediante el uso de trampas de intercepción, se estudió el efecto de la precipitación y el tipo de hábitat sobre la denso-actividad del ensamble de artrópodos epígeos _en particular Tenebrionidae_ del Parque Nacional Llanos de Challe. Este parque está ubicado en el desierto costero transicional de Chile, en la III Región de Atacama. Los muestreos se realizaron durante tres días por mes (septiembre, octubre y diciembre en el período de máxima actividad biológica del sistema y en los años 1989 (año no-ENOS seco, 1997 (año ENOS intenso y 2000 (año no-ENOS húmedo. En las comparaciones se utilizaron dos sitios pedológicamente contrastantes: un hábitat dunario costero y un hábitat pedregoso interior. Se registró la presencia de 15 órdenes de Arthropoda. Los hexápodos constituyeron > 95 % del total de los especímenes capturados (9.065 individuos, siendo Collembola (36,1 % y Coleoptera (29,8 % los órdenes con mayor representatividad numérica. El número de órdenes con representantes activos varió ligeramente entre años: 13 órdenes se registraron en 1989 (44 % de precipitación bajo el promedio, 15 en 1997 (443 % sobre el promedio y 11 en 2000 (52 % sobre el promedio. El efecto del evento ENOS se reflejó claramente en la contribución numérica en la mayoría de los taxa registrados. Aunque más sutilmente, este efecto también se reflejó en la composición del ensamble de taxa dominantes y entre hábitat pedológicos, particularmente con Tenebrionidae y Formicidae. Especialmente en las dunas costeras, Tenebrionidae dominó claramente el ensamble de artrópodos epígeos, siendo Gyriosomus Guérin-Méneville el género más diverso y abundante. La dominancia de Gyriosomus plantea un conjunto de interrogantes respecto de su nivel de endemismo, diversidad y distribución de sus especies, y el papel funcional de estas en el ecosistema estudiadoBy using pitfall traps, the effects of rainfall and habitat type on the denso

  4. DEVELOPMENT OF MULTI-METRIC INDEX BASED ON BENTHIC MACROINVERTEBRATES TO ASSESS RIVER ECOSYSTEM OF A TYPICAL PLAIN RIVER NETWORK IN CHINA%典型平原河网地区底栖动物生物指数筛选及评价基准研究

    Institute of Scientific and Technical Information of China (English)

    陈小华; 康丽娟; 孙从军; 杨青

    2013-01-01

    Bio assessment of benthic macroinvertebrate-based multmietrics is a very effective approach to evaluate quality of river water. Benthic macroinvertebrate assemblages were sampled at 83 sites in Shanghai metropolitan area, a typical dense river network plain. A total of 20 taxa of the benthic macroinvertebrate were collected, including 50% of Mollusca, 30% of Arthropoda and 20% of Annelida. Among 74 sites with living samples, 32 relatively clean sites and 42 polluted sites were separated based on Hilsenhoff biotic index discrminatory criteria. A comprehensive evaluation using 28 widely-used metrics was carried out. Furthermore, 8 metrics were selected as the most sensitive ones based on non-parametric tests (i.e., Mann-Whitney U test and Kolmogorov-Smirnov test). By standard scoring method, eight sensitive metrics were unified and integrated into a multi-metric index on a scale ranging from 8 to 40 for bioassessment at each site. Biocriteria values for benthic macroinvertebrate were proposed by quartation, i.e., 8-15, very poor; 16-23, poor; 24-31, fair; and 32-40, good. Water quality of 9 sites with no living sample were marked as very poor. According to the biocriteria, 41 typical sites were divided into 5 groups. The past 5-year historical data of physico-chemical water quality indicators have significant difference among 5 group sites. Consequently, the discrminatory biocriteria are suitable for the assessment of the river water quality of the Shanghai City.%2011年夏、秋季在上海市全境主要河流的83个断面进行大型底栖动物的采样,共获取底栖动物20个分类单位(种),其中软体动物、环节动物和节肢动物分别占50%、30% 和20%.选取常见的28个生物指数分别进行计算,并采用非参数统计检验方法筛选出8个敏感生物指数.通过记分法对8种敏感生物指数统一量纲后,获得数值范围为8-40的综合生物指数,运用四分法划分了判别河道水环境质量的生物基准:32-40,

  5. 深海热液口化能合成共生作用的研究进展%Research Progress of the Chemosynthetic Symbioses in the Deep-Sea Hydrothermal Vent

    Institute of Scientific and Technical Information of China (English)

    刘昕明; 林荣澄; 黄丁勇

    2013-01-01

    海洋无脊椎动物和细菌间的化能合成共生作用的发现,改变了人们对深海热液口初级生产力主要来源的认知.近年的研究表明,营化能合成共生的动物隶属于纤毛门、软体动物门、环节动物门和节肢动物门;其中无脊椎动物作为宿主在与共生菌的长期共生过程中,伴随着部分器官和功能的退化或消失,逐渐形成和演化出了与此相适应的形态结构,并产生了一些特殊的行为;在深海热液口发现的所有化能合成共生菌都属于革兰氏阴性菌,它们的宿主大致可以分为2个群体;通过16 SrRNA基因编码分析,不同代谢类型的共生菌在系统发育中通常处于不同分支,形态也有所差异;共生菌独特的传播方式和进化模式也使其更加适应共生生活;由无脊椎动物和化能合成细菌构成的共生体系与环境相互作用,影响了深海热液口生态系统的演化.对共生菌蛋白质及代谢组学的研究,以及对宿主生理和代谢机制的研究将成为未来热液口化能合成共生作用研究的新热点.%The discovery of the chemosynthetic symbioses between marine invertebrates and bacteria revolutionized our understanding of the energy sources that fuel primary productivity in the deep sea.Chemosynthetic host were classified within four major group including Ciliophora,Mollusca,Annelida and Arthropoda; Symbiotic invertebrates with anatomical adaptations of chemosynthetic associations are usually characterized by rudimentary or absent digestive system.Effective behavioural and physiological strategies are also used by animals to supply their symbionts with both reductants and oxidants.All the symbionts are Gram negative bacteria,and clustered in two different branches related to symbiont type in the phylogenetic tree based on the 16S rRNA gene sequences,distinct differences in morphology were also observed between the two groups.The transmission and evolution strategy utilized

  6. 湛江湾大型底栖动物的群落结构和多样性特征%Community Structure and Diversity of Macrobenthos in Zhanjiang Bay

    Institute of Scientific and Technical Information of China (English)

    周伟男; 孙省利; 李荣冠; 江锦祥; 张才学

    2013-01-01

    The situations of macrobenthos in Zhanjiang Bay have been investigated in 10 sites during May 2010, analyzing the species composition, biomass, population density and species diversity and classifying on community structure by the method of CLUSTER and MDS. A total of 112 species of 7 phyla were identified, including Annelida, Mollusca and Arthropoda, which were the dominant phyla in Zhanjiang Bay. Biomass ranged from 0.93 to 98.20 g/m2, with the highest average biomass of Mollusca. Population density ranged for 6.11 to 24.80 ind/m2, and population density of Annelida (24.08 ind/m2) was the highest, followed by Sipuncula (22.22 ind/m2). The community species of the macrobenthos in the area is relatively abundant while the diversity is poor. According to the analysis of clustering and multidimensional scaling ordination, macrobenthic animals in Zhanjiang Bay could be divided into 4 communities. Through the abundance/biomass curve analysis, macrobenthic organisms in Zhanjiang Bay was affected so seriously by environmental pollution or disturbance that the community structure was unstable. Compared with the other marine sites,the number of species, biomass and abundance of the Zhanjiang Bay were lower.%  2010年5月,在湛江湾海域设立10个站点对大型底栖生物进行调查,分析湛江湾大型底栖生物的种类组成、生物量、栖息密度和生物多样性特征,并通过聚类(CLUSTER)和MDS排序对大型底栖生物群落进行划分.结果表明,调查海域共有底栖生物共7门112种,环节动物门、软体动物门和节肢动物门为湛江湾大型底栖生物的主要类群.生物量分布范围为0.93~98.20 g·m-2,其中软体动物门的平均生物量最高值.栖息密度分布范围为6.11~24.80 ind·m-2,其中以环节动物门(24.08 ind·m-2)和星虫动物门(22.22 ind·m-2)最高.该海域大型底栖生物群落物种较为丰富,但多样性差.根据Bray-Curtis相似性系数聚类分析和多维尺度排序分析结

  7. Microbial degradation of a metal organic biocide in soils; Mikrobieller Abbau eines im Holzschutz verwendeten metallorganischen Biozids im Boden

    Energy Technology Data Exchange (ETDEWEB)

    Jakobs, Desiree

    2010-06-17

    -fingerprinting technique. Shifts in the bacterial community structure were analyzed by correspondence analysis to explore the effect of WP and incubation time on the microbial community patterns. Bacterial and eukaryotic community structure differed significant between samples with Cu-Amine treated samples and Cu-HDO treated samples. To identify abundant eukaryotic community members a cloning and sequencing approach was carried out. Only few fungal sequences were obtained of the eukaryotic sequence diversity in the interface of wood and soil, which were affiliated to pronounced shifts in the eukaryotic community structure along the incubation time. One of these was the white-rotter Sphaerobolus stellatus (basidiomycota) and the mold-rotter Lecytophora multabilis (ascomycota). The dominant eukaryotic community members were affiliated to the phyla Alveolata, Disicicrista, Amoebozoa, Arthropoda or Nematoda. However, the majority of these phyla are known to have a bacteriovorious lifestyle and are not able to degrade or metabolize wood, WP or WP ingredients. This finding suggests that the majority of eukaryotes grazes on the bacterial population and is rarely involved in Cu-HDO degradation. In conclusion, a defined bacterial population is involved in Cu-HDO degradation and both the bacterial and eukaryotic community was significantly directly and indirectly affected by the presence of Cu-HDO. (orig.)

  8. 基于大型底栖无脊椎动物群落的上海市河道水质生物学评价%Evaluation on River Water Quality Based on the River Substrate Macro-invertebrate in Shanghai, China

    Institute of Scientific and Technical Information of China (English)

    陈小华; 杨青; 赵振; 刘文亮

    2013-01-01

    The macro-invertebrate assemblages of river substrate were investigated at 83 sites in Shanghai city in summer and autumn 2011. A total of 20 taxa of the macro-invertebrate were collected, including 10 of Mollusca, 6 of Arthropoda and 4 of Annelida. No any living macro-invertebrates were detected from samples collected at 9 sites which were heavily polluted and no suitable habitat available. The water quality at the rest 74 sites with living macro-invertebrate was evaluated by Shannon-Wiener index, Hilsenhoff Biotic Index (HBI) and Goodnight Biotic Index (GBI). Based on Shannon-Wiener Index, the water quality was critically polluted at 25 sites and heavily polluted at 49 sites. The water quality was heavily polluted at 38 sites, moderately at 5 sites and slightly at 31 sites, by the value of Hilsenhoff Biotic Index (HBI). Evaluating on water quality by Goodnight Biotic Index (GBI) , the river water was severely polluted at 33 , moderately at 2 sites, and lightly at 39 sites. In contrast with the data of historical physicochemical water quality indicators in last 3 years, Shannon-Wiener Index had low efficiency and accuracy, while Hilsenhoff Biotic Index and Goodnight Biotic Index had much higher accuracy in spatial consistency between physicochemical assessment and biological evaluation.%2011年夏秋季,在上海市全境83个河道断面开展了大型底栖无脊椎动物采样,共获取底栖动物20个分类单位(种).9个极严重污染断面未采集到活体大型底栖生物,生境基本丧失.其余74个有活体生物断面,采用三种常用生物指数:Shannon-Wiener多样性指数、Hilsenhoff耐污指数、Goodnight修正指数分别进行计算及评价.Shannon-Wiener多样性指数判别为25个严重污染和49个重污染断面;Hilsenhoff耐污指数划分38个重污染、5个中污染和31个轻污染断面;Goodnight修正指数划分33个重污染、2个中污染和39个轻污染断面.与典型河道断面的水质理化指标监测值

  9. Study of the Intertidal Macrobenthic Fauna in Dayushan Island, Zhejiang%浙江大渔山岛潮间带大型底栖动物的群落结构

    Institute of Scientific and Technical Information of China (English)

    杨秀琴

    2012-01-01

    The community structures of the intertidal macrobenthic fauna in Dayushan island,Zhejiang,including species composition,quantity distribution and biodiversity,were analyzed in the study.The investigation in the study found 35 species,including 1 species of Annelida,2 species of Chordata,2 species of coelenterate,9 species of Arthropoda and 21 species of Mollusca.The average biomass and density in all stations were 1027.33 g/m2 and 1404 ind.m-2,respectively.The mollusca were the first in biomass and density among all macrobenthic fauna.The value of Shannon-Weaner index,Margalef's species richness index and Pielou's evenness index were 0.193~2.101,0.268~1.744 and 0.073~2.007,and their averages were 1.140±1.084,1.080±0.696 and 0.780±0.886,respectively.There was significant difference between the results in the study and in the similar experiments.The Abundance/Biomass curves of the intertidal zone of Dayushan island had part of the cross.%文章通过分析浙江大渔山岛潮间带大型底栖动物的物种组成、数量分布和生物多样性等群落结构特征来了解周围海域的水质状况。本次大渔山岛海域潮间带调查采获的大型底栖动物标本共有35种,其中软体动物21种,节肢动物9种,脊索动物与腔肠动物各2种,环节动物仅1种。且该海域潮间带大型底栖动物的平均生物量为1027.33 g/m2,平均丰度为1404 ind./m2。在各类群底栖动物中,软体动物的平均生物量及丰富都为第一。大渔山岛潮间带大型底栖动物的多样性指数、丰富度指数和均匀度指数的分布范围分别在0.193~2.101、0.268~1.744和0.073~2.007,平均值分别为1.140±1.084、1.080±0.696和0.780±0.886。

  10. 2010年秋季黄河口及其邻近海域中小型浮游动物的群落特征%The characteristics of meso- and micro-zooplankton commu-nity in the Yellow River estuary and its adjacent area in au-tumn, 2010

    Institute of Scientific and Technical Information of China (English)

    王文杰; 刘光兴

    2013-01-01

    为掌握黄河口邻近水域中小型浮游动物的现状并弥补此类重要浮游生物类群在以往调查研究中的欠缺,于2010年9月在黄河口及其邻近海域用浅水Ⅱ型浮游生物网采集了浮游动物样品,分析了中小型浮游动物的种类组成、丰度分布、优势种、生物多样性及群落结构。本次调查共鉴定浮游动物成体48种,浮游幼虫21类,桡足类和水螅水母为最主要的浮游动物类群,分别占浮游动物成体种数的37.5%和20.8%。浮游动物丰度为2300.1~266232.0个/m3,平均丰度为37074.3个/m3。优势种(类)8种,分别为夜光虫、强额拟哲水蚤、小拟哲水蚤、背针胸刺水蚤、异体住囊虫、桡足类无节幼虫、双壳类幼体以及腹足类幼体,其中夜光虫为研究水域最主要优势种。对各站位物种组成和丰度进行分析,调查水域中小型浮游动物可划分为4个组群,各组群的分布格局受到水温、盐度和海流的共同影响。该研究为此水域生态系统的长期变化研究提供了重要基础资料和参考依据。%In order to study the meso- and micro-zooplankton species composition, abundance and assemblages distribution as well as the relationship between zooplankton and the environmental factors, a survey was conducted and the zooplankton samples were collected using a shallow water style plankton net (mesh size 200 μm) in Sep-tember 2010 in Yellow River Estuary and its adjacent area. A total of 48 zooplankton species and 21 pelagic larvae were identified, and they belong to the phylum Protozoa, Cnidaria, Ctenophora, Chordata, Arthropoda and Chae-tognatha. Copepod is the most dominant component of the Crustacea, and Crustacea and Cnidaria dominated the components of the zooplankton. The number percentage of pelagic copepod and Cnidaria species were 37.5% and 20.8%of total species, respectively. The abundance of zooplankton is from 2300.1 ind/m3 to 266232.0 ind/m3, and the main abundance was 37074

  11. 黄河三角洲湿地水域底栖动物群落结构及其时空差异%Community characteristcs and space-time variances of the water area macrozoobenthos in the Huanghe River Delta

    Institute of Scientific and Technical Information of China (English)

    董贯仓; 李秀启; 高云芳; 刘峰; 秦玉广; 王亚楠

    2012-01-01

    Macrozoobenthic community characteristics and their space-time variances of different kinds of water areas (VIZ. river, reservoir and aquaculture ponds) were recorded in the Huanghe River Delta in May, August and November of 2009, respectively. The water quality was also estimated by the Shannon-Wiener index. There were 35 species, belonging to 4 phyla, 8 classes, 25 families and 31 genera of macrozoobenthos, which included 11 species of Annelida, 7 species of Mollusca, 16 species of Arthropoda and 1 species of Chordata. The number of macrobenthos was small as there being less than 3 species in 3/4 sampling sites. Both of the dominant species and the number of the species changed with the fluctuations of season. The inhabit density was between 0 and 22 000 ind/m2 with the mean value of 1 111 ind/m2 and the biomass density was between 0 and 146 g/m2 with the mean value of 12. 30 g/ m2. Most of the Shannon-Wiener index was small except 9# in August (3.15). 2/42 of them was between 2 and 3 with 8/42 between 1 and 2, 14/42 between 0 and 1, 5/42 being 0 and being no macrobenthos at 12/42 of the samples. It indicated that most of the different water areas were polluted to varying degrees in the Huanghe River Delta.%2009年5月、8月和11月调查了黄河三角洲河流、水库、养殖池塘等水域14个采样点的大型底栖动物群落多样性及其时空差异,并用Shannon-Wiener多样性指数对环境进行了评价.共采集底栖动物35种,隶属4门8纲25科31属,其中环节动物11种、软体动物7种、节肢动物16种和脊索动物1种;物种数均较少,3/4次少于3种,且近1/3次未采集到底栖动物,优势种及物种数均随季节波动而变化;栖息密度为0 ~22 000个/m2,平均为1 111个/m2;生物量为0~ 146 g/m2,平均为12.30 g/m2.结果表明,Shannon-Wiener指数均较低,仅9号站在8月>3(3.15),2/42次为2~3、8/42次为1~2、14/42次为0~1、5/42为0,且12/42次未采集到底栖动物,表明黄河三角

  12. 基于线粒体cox1片段序列的胶州湾浮游动物DNA条形码分析%DNA BARCODING OF ZOOPLANKTON IN THE JIAOZHOU BAY FOR SPECIES IDENTIFICATION

    Institute of Scientific and Technical Information of China (English)

    王敏晓; 程方平; 李超伦; 孙松

    2011-01-01

    Estimation of zooplankton diversity and distribution is important for understanding local marine ecosystem conditions,and may serve as sensitive indicators for climate-induced changes.The scarcity of taxonomists and subtle morphological variations in some groups pose a problem for the identification of zooplanktons,especially at their larval stages.DNA barcodes provide an alternative approach to accurate identification of zooplankton species.The efficiency of the mitochondrial cox1 fragments for species reorganization in zooplanktons was evaluated in this study.The samples were collected from the Jiaozhou Bay and a station in the South Yellow Sea.82 DNA barcodes were determined for 45 common species that belonged to six different phyla in the local region,including:Arthropoda,Chaetognatha,Chordata,Cnidaria,Echinodermata,and Mollusca.According to the saturation plot,the cox1 gene was substitutionally saturated for the alignment,which was best illustrated by the wobble codons of the gene.The wobble codons quickly got saturated at around 0.2 substitution per site.K2P genetic distances between individuals within the same species ranged from 0 to 0.11,with an average of 0.013(SE = 0.003);meanwhile,genetic distance between species within the same genera ranged from 0.137 to 0.369,with an average of 0.265(SE = 0.002).Thus the genetic distance between species was at least 20 times larger that of the within species,indicating a barcode gap,which ensured that cox1 sequences can be used as reliable characters for species identification for the zooplankton assemblages.However,species with extremely large intraspecific divergences were still noticed in our study,which may be explained by population genetic divergence owing to ecological or geographical isolation,unidentified cryptic speciation,and mis-identification.The significant barcode gap and the long-branch isolated shallow tips topology for the Sagitta bedoti suggested a possible cryptic speciation for the

  13. 泉州湾洛阳江口2种红树林生境大型底栖动物群落多样性比较%Comparison of benthic macrofaunal communities in two mangrove habitats of Luoyangjiang Estuary in Quanzhou Bay

    Institute of Scientific and Technical Information of China (English)

    郭涛; 蔡立哲; 卓异; 饶义勇; 李想; 陈昕餠; 傅素晶; 纪剑锋

    2014-01-01

    In order to compare the benthic macrofaunal community in two mangrove habitats,Aegiceras corniculatum and Kandelia candel,in Luoyangjiang Estuary,Quanzhou Bay,China,benthic macrofauna was investigated in 4 sea-sons from April 201 1 to January 2012.A total of 49 benthic macrofaunal species were recorded,including 15 Annel-ida,8 Mollusca,15 Arthropoda,3 Chordata,2 Hexapod,1 Cnidaria,Platyhelminthes,Nemertea,Sipuncula,Oli-gochaeta and Bivalve.Nephtys oligobranchia,Assiminea brevicula,Uca arcuata,Actinia sp.showed high density in both two habitats,Phascolosoma esculenta is a dominant species in both two habitats but with lower density.Although the mean biomass of Kandelia candel was higher than Aegiceras corniculatum,the species number,density,diversity index(H′),evenness index(J)and richness index(d)of Aegiceras corniculatum were all higher.Two-way ANOVA showed that the diversity and evenness indexes of the two benthic macrofaunal communities had significant seasonal differences,habitat differences and habitat ×season differences.Cluster analysis showed high similarity between the benthic macrofaunal communities in two mangrove habitats because of same tidal zone and similar types of sediment and sediment particle size.%为探讨泉州湾洛阳江口桐花树和秋茄2种红树林生境的大型底栖动物群落是否存在明显差异,于2011年4月至2012年1月对2种红树林生境的大型底栖动物进行了季度定量调查.结果表明:4个季度在2种红树林生境定量取样获得大型底栖动物49种,其中多毛类15种,腹足类8种,甲壳类15种,鱼类3种,昆虫2种,刺胞动物、扁形动物、纽形动物、星虫动物、寡毛类和双壳类各1种.寡鳃齿吻沙蚕(Nephtys oligobranchia)、短拟沼螺(Assiminea brevicula)、弧边招潮蟹(Uca arcua-ta)、指海葵(Actinia sp.)等在2种生境均有较高的栖息密度,可口革囊星虫(Phascolosoma esculen-ta)是2种生境的常见种