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Sample records for arthrobacter aurescens tc1

  1. Evaluation of Arthrobacter aurescens Strain TC1 as Bioaugmentation Bacterium in Soils Contaminated with the Herbicidal Substance Terbuthylazine.

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    Vera P Silva

    Full Text Available In the last years the chloro-s-triazine active substance terbuthylazine has been increasingly used as an herbicide and may leave residues in the environment which can be of concern. The present study aimed at developing a bioaugmentation tool based on the soil bacterium Arthrobacter aurescens strain TC1 for the remediation of terbuthylazine contaminated soils and at examining its efficacy for both soil and aquatic compartments. First, the feasibility of growing the bioaugmentation bacterium inocula on simple sole nitrogen sources (ammonium and nitrate instead of atrazine, while still maintaining its efficiency to biodegrade terbuthylazine was shown. In sequence, the successful and quick (3 days bioremediation efficacy of ammonium-grown A. aurescens TC1 cells was proven in a natural soil freshly spiked or four-months aged with commercial terbuthylazine at a dose 10× higher than the recommended in corn cultivation, to mimic spill situations. Ecotoxicity assessment of the soil eluates towards a freshwater microalga supported the effectiveness of the bioaugmentation tool. Obtained results highlight the potential to decontaminate soil while minimizing terbuthylazine from reaching aquatic compartments via the soil-water pathway. The usefulness of this bioaugmentation tool to provide rapid environment decontamination is particularly relevant in the event of accidental high herbicide contamination. Its limitations and advantages are discussed.

  2. Arthrobacter aurescens TC1 Atrazine Catabolism Genes trzN, atzB, and atzC Are Linked on a 160-Kilobase Region and Are Functional in Escherichia coli

    OpenAIRE

    Sajjaphan, Kannika; Shapir, Nir; Wackett, Lawrence P; Palmer, Michael; Blackmon, Barbara; Tomkins, Jeff; Sadowsky, Michael J.

    2004-01-01

    Arthrobacter aurescens strain TC1 metabolizes atrazine to cyanuric acid via TrzN, AtzB, and AtzC. The complete sequence of a 160-kb bacterial artificial chromosome clone indicated that trzN, atzB, and atzC are linked on the A. aurescens genome. TrzN, AtzB, and AtzC were shown to be functional in Escherichia coli. Hybridization studies localized trzN, atzB, and atzC to a 380-kb plasmid in A. aurescens strain TC1.

  3. Structures of a γ-aminobutyrate (GABA) transaminase from the s-triazine-degrading organism Arthrobacter aurescens TC1 in complex with PLP and with its external aldimine PLP–GABA adduct

    Science.gov (United States)

    Bruce, Heather; Nguyen Tuan, Anh; Mangas Sánchez, Juan; Leese, Charlotte; Hopwood, Jennifer; Hyde, Ralph; Hart, Sam; Turkenburg, Johan P.; Grogan, Gideon

    2012-01-01

    Two complex structures of the γ-aminobutyrate (GABA) transaminase A1R958 from Arthrobacter aurescens TC1 are presented. The first, determined to a resolution of 2.80 Å, features the internal aldimine formed by reaction between the ∊-amino group of Lys295 and the cofactor pyridoxal phosphate (PLP); the second, determined to a resolution of 2.75 Å, features the external aldimine adduct formed between PLP and GABA in the first half-reaction. This is the first structure of a microbial GABA transaminase in complex with its natural external aldimine and reveals the molecular determinants of GABA binding in this enzyme. PMID:23027742

  4. Low temperature reduction of hexavalent chromium by a microbial enrichment consortium and a novel strain of Arthrobacter aurescens

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    Thompson Vicki S

    2006-01-01

    Full Text Available Abstract Background Chromium is a transition metal most commonly found in the environment in its trivalent [Cr(III] and hexavalent [Cr(VI] forms. The EPA maximum total chromium contaminant level for drinking water is 0.1 mg/l (0.1 ppm. Many water sources, especially underground sources, are at low temperatures (less than or equal to 15 Centigrade year round. It is important to evaluate the possibility of microbial remediation of Cr(VI contamination using microorganisms adapted to these low temperatures (psychrophiles. Results Core samples obtained from a Cr(VI contaminated aquifer at the Hanford facility in Washington were enriched in Vogel Bonner medium at 10 Centigrade with 0, 25, 50, 100, 200, 400 and 1000 mg/l Cr(VI. The extent of Cr(VI reduction was evaluated using the diphenyl carbazide assay. Resistance to Cr(VI up to and including 1000 mg/l Cr(VI was observed in the consortium experiments. Reduction was slow or not observed at and above 100 mg/l Cr(VI using the enrichment consortium. Average time to complete reduction of Cr(VI in the 30 and 60 mg/l Cr(VI cultures of the consortium was 8 and 17 days, respectively at 10 Centigrade. Lyophilized consortium cells did not demonstrate adsorption of Cr(VI over a 24 hour period. Successful isolation of a Cr(VI reducing organism (designated P4 from the consortium was confirmed by 16S rDNA amplification and sequencing. Average time to complete reduction of Cr(VI at 10 Centigrade in the 25 and 50 mg/l Cr(VI cultures of the isolate P4 was 3 and 5 days, respectively. The 16S rDNA sequence from isolate P4 identified this organism as a strain of Arthrobacter aurescens, a species that has not previously been shown to be capable of low temperature Cr(VI reduction. Conclusion A. aurescens, indigenous to the subsurface, has the potential to be a predominant metal reducer in enhanced, in situ subsurface bioremediation efforts involving Cr(VI and possibly other heavy metals and radionuclides.

  5. Isolation and characterization of atrazine-degrading Arthrobacter sp. AD26 and use of this strain in bioremediation of contaminated soil

    Institute of Scientific and Technical Information of China (English)

    LI Qingyan; LI Ying; ZHU Xikun; CAI Baoli

    2008-01-01

    A bacterial strain (AD26) capable of utilizing atrazine as a sole nitrogen source for growth was isolated from an industrial wastewatersample by enrichment culture. The 16S rRNA gene sequencing identified AD26 as anArthrobacter sp. PCR assays indicated that AD26contained atrazine-degrading genes trzN and atzBC. The trzN gene of AD26 only differs from the trzN ofArthrobacter aurescens TC1by one base (A→T at 907) and one amino acid (Met→Leu at 303). The specific activity of trzN of AD26 in crude cell extract was0.28 U/mg, which was 1.2 times that of TC 1. This strain has shown faster growth and atrazine-degradation rates in atrazine-containingminimal media than two well characterized atrazine-degrading bacteria, Pseudomonas sp. ADP and Arthrobacter aurescens TC 1. Afterincubating for 48 h at 30℃, the OD600 of AD26 reached 2.6 compared with 1.33 of ADP. AD26 was capable of degrading 500 mg/Lof atrazine in minimal medium at 95% in 72 h, while the degradative rates by TC1 and ADP were only 90% and 86%, respectively. Abioremediation trial of contaminated soil has indicated that AD26 can degrade as high as 98% of atrazine contained in soil (300 mg/kg)after incubating for 20 d at 26℃, nominating this strain as a good candidate for use in bioremediation programs.

  6. The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.

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    Christophe Monnet

    Full Text Available Arthrobacter arilaitensis is one of the major bacterial species found at the surface of cheeses, especially in smear-ripened cheeses, where it contributes to the typical colour, flavour and texture properties of the final product. The A. arilaitensis Re117 genome is composed of a 3,859,257 bp chromosome and two plasmids of 50,407 and 8,528 bp. The chromosome shares large regions of synteny with the chromosomes of three environmental Arthrobacter strains for which genome sequences are available: A. aurescens TC1, A. chlorophenolicus A6 and Arthrobacter sp. FB24. In contrast however, 4.92% of the A. arilaitensis chromosome is composed of ISs elements, a portion that is at least 15 fold higher than for the other Arthrobacter strains. Comparative genomic analyses reveal an extensive loss of genes associated with catabolic activities, presumably as a result of adaptation to the properties of the cheese surface habitat. Like the environmental Arthrobacter strains, A. arilaitensis Re117 is well-equipped with enzymes required for the catabolism of major carbon substrates present at cheese surfaces such as fatty acids, amino acids and lactic acid. However, A. arilaitensis has several specificities which seem to be linked to its adaptation to its particular niche. These include the ability to catabolize D-galactonate, a high number of glycine betaine and related osmolyte transporters, two siderophore biosynthesis gene clusters and a high number of Fe(3+/siderophore transport systems. In model cheese experiments, addition of small amounts of iron strongly stimulated the growth of A. arilaitensis, indicating that cheese is a highly iron-restricted medium. We suggest that there is a strong selective pressure at the surface of cheese for strains with efficient iron acquisition and salt-tolerance systems together with abilities to catabolize substrates such as lactic acid, lipids and amino acids.

  7. Complete genome sequence and metabolic potential of the quinaldine-degrading bacterium Arthrobacter sp. Rue61a

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    Niewerth Heiko

    2012-10-01

    Full Text Available Abstract Background Bacteria of the genus Arthrobacter are ubiquitous in soil environments and can be considered as true survivalists. Arthrobacter sp. strain Rue61a is an isolate from sewage sludge able to utilize quinaldine (2-methylquinoline as sole carbon and energy source. The genome provides insight into the molecular basis of the versatility and robustness of this environmental Arthrobacter strain. Results The genome of Arthrobacter sp. Rue61a consists of a single circular chromosome of 4,736,495 bp with an average G + C content of 62.32%, the circular 231,551-bp plasmid pARUE232, and the linear 112,992-bp plasmid pARUE113 that was already published. Plasmid pARUE232 is proposed to contribute to the resistance of Arthrobacter sp. Rue61a to arsenate and Pb2+, whereas the linear plasmid confers the ability to convert quinaldine to anthranilate. Remarkably, degradation of anthranilate exclusively proceeds via a CoA-thioester pathway. Apart from quinaldine utilization, strain Rue61a has a limited set of aromatic degradation pathways, enabling the utilization of 4-hydroxy-substituted aromatic carboxylic acids, which are characteristic products of lignin depolymerization, via ortho cleavage of protocatechuate. However, 4-hydroxyphenylacetate degradation likely proceeds via meta cleavage of homoprotocatechuate. The genome of strain Rue61a contains numerous genes associated with osmoprotection, and a high number of genes coding for transporters. It encodes a broad spectrum of enzymes for the uptake and utilization of various sugars and organic nitrogen compounds. A. aurescens TC-1 is the closest sequenced relative of strain Rue61a. Conclusions The genome of Arthrobacter sp. Rue61a reflects the saprophytic lifestyle and nutritional versatility of the organism and a strong adaptive potential to environmental stress. The circular plasmid pARUE232 and the linear plasmid pARUE113 contribute to heavy metal resistance and to the ability to degrade

  8. Bioavailability of Ag(I) with Arthrobacter oxidas and Arthrobacter globiformis

    CERN Document Server

    Gelagutashvili, E; Ginturi, E; Bagdavadze, N; Kuchava, N; Tsakadze, K; Janjalia, M

    2012-01-01

    The biosorption of Ag(I)_ Arthrobacter species (Arthrobacter globiformis 151B and Arthrobacter oxidas 61B) was studied at simultaneous application of dialysis and atomic absorption analysis. The biosorption constants and nature of interaction for Ag(I) -Arthrobacter oxidas and Ag(I) -Arthrobacter globiformis were determined. The biosorption constants for Ag(I)- -Arthrobacter globiformis and for Ag(I) -Arthrobacter oxidas equal to 65.0 x10-4 and 35.0 x10-4 respectively.

  9. TC-1 Satellite of DSP Delivered

    Institute of Scientific and Technical Information of China (English)

    SunQing

    2004-01-01

    TC-1 satellite of Double Star Program (DSP), a near-earth equatorial satellite, was delivered to the representative of the end user, the Research Center for Space Science and Application under the Chinese Academy of Sciences (CAS) on April 12, 2004, which symbolized that TC-1 satellite was put into operation formally.

  10. Low temperature reduction of hexavalent chromium by a microbial enrichment consortium and a novel strain of Arthrobacter aurescens

    OpenAIRE

    Thompson Vicki S; Apel William A; Horton Rene' N; Sheridan Peter P

    2006-01-01

    Abstract Background Chromium is a transition metal most commonly found in the environment in its trivalent [Cr(III)] and hexavalent [Cr(VI)] forms. The EPA maximum total chromium contaminant level for drinking water is 0.1 mg/l (0.1 ppm). Many water sources, especially underground sources, are at low temperatures (less than or equal to 15 Centigrade) year round. It is important to evaluate the possibility of microbial remediation of Cr(VI) contamination using microorganisms adapted to these l...

  11. Espalhamento Thomson no tiroide compacto TC-1

    OpenAIRE

    Luiz Angelo Berni

    1996-01-01

    Resumo: Pela primeira vez foi instalado o diagnóstico de espalhamento Thomson no Toróide Compacto TC-1 da Unicamp. Primeiramente o diagnóstico foi realizado com uma única passagem do laser de rubi ( energia: 3 J -duração: 40 ns ) pelo plasma com injeção axial e radial do laser e observado a 90° .Com a injeção axial obtivemos uma densidade de (4,3 ± 0,7)x1021 m-3 e uma temperatura eletrônica de ( 8 ± 3) eV. Estes resultados foram confirmados com a geometria radial de injeção do laser com uma d...

  12. s-triazine degrading bacterial isolate Arthrobacter sp. AK-YN10, a candidate for bioaugmentation of atrazine contaminated soil.

    Science.gov (United States)

    Sagarkar, Sneha; Bhardwaj, Pooja; Storck, Veronika; Devers-Lamrani, Marion; Martin-Laurent, Fabrice; Kapley, Atya

    2016-01-01

    The Arthrobacter sp. strain AK-YN10 is an s-triazine pesticide degrading bacterium isolated from a sugarcane field in Central India with history of repeated atrazine use. AK-YN10 was shown to degrade 99 % of atrazine in 30 h from media supplemented with 1000 mg L(-1) of the herbicide. Draft genome sequencing revealed similarity to pAO1, TC1, and TC2 catabolic plasmids of the Arthrobacter taxon. Plasmid profiling analyses revealed the presence of four catabolic plasmids. The trzN, atzB, and atzC atrazine-degrading genes were located on a plasmid of approximately 113 kb.The flagellar operon found in the AK-YN10 draft genome suggests motility, an interesting trait for a bioremediation agent, and was homologous to that of Arthrobacter chlorophenolicus. The multiple s-triazines degradation property of this isolate makes it a good candidate for bioremediation of soils contaminated by s-triazine pesticides.

  13. Arthrobacter equi sp. nov., isolated from veterinary clinical material.

    Science.gov (United States)

    Yassin, A F; Spröer, C; Siering, C; Hupfer, H; Schumann, P

    2011-09-01

    A Gram-positive-staining, catalase-positive, non-spore-forming, rod-shaped bacterium, strain IMMIB L-1606(T), isolated from genital swabs of a horse, was characterized using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that the organism was related to members of the genus Arthrobacter, displaying sequence similarities of 93.5-99.1 % with the type strains of recognized species of the genus. Cell-wall analysis revealed peptidoglycan type A3α L-Lys-L-Ser-L-Thr-L-Ala. DNA-DNA hybridization data and biochemical characterization of strain IMMIB L-1606(T) enabled the isolate to be differentiated genotypically and phenotypically from phylogenetically closely related species of the genus Arthrobacter. Therefore, it is concluded that strain IMMIB L-1606(T) represents a novel species of the genus Arthrobacter, for which the name Arthrobacter equi sp. nov. is proposed. The type strain of Arthrobacter equi sp. nov. is IMMIB L-1606(T) ( = DSM 23395(T) = CCUG 59597(T)).

  14. Cloning and sequencing of the trpE gene from Arthrobacter globiformis ATCC 8010 and several related subsurface Arthrobacter isolates

    Energy Technology Data Exchange (ETDEWEB)

    Chernova, T.; Viswanathan, V.K.; Austria, N.; Nichols, B.P.

    1998-09-01

    Tryptophan dependent mutants of Arthrobacter globiformis ATCC 8010 were isolated and trp genes were cloned by complementation and marker rescue of the auxotrophic strains. Rescue studies and preliminary sequence analysis reveal that at least the genes trpE, trpC, and trpB are clustered together in this organism. In addition, sequence analysis of the entire trpE gene, which encodes component I of anthranilate synthase, is described. Segments of the trpE gene from 17 subsurface isolates of Arthrobacter sp. were amplified by PCR and sequenced. The partial trpE sequences from the various strains were aligned and subjected to phylogenetic analysis. The data suggest that in addition to single base changes, recombination and genetic exchange play a major role in the evolution of the Arthrobacter genome.

  15. Arthrobacter pityocampae sp. nov., isolated from Thaumetopoea pityocampa (Lep., Thaumetopoeidae).

    Science.gov (United States)

    İnce, İkbal Agah; Demirbağ, Zihni; Katı, Hatice

    2014-10-01

    A bacterium (strain Tp2(T)) was isolated from a caterpillar of the pine processionary moth, Thaumetopoea pityocampa (Den. & Schiff.) (Lepidoptera: Thaumetopoeidae), a destructive pine forest pest. The bacterium is a Gram-stain-positive, red-pigmented coccus, oxidase-negative, nitrate-reducing, non-motile and non-spore-forming. Strain Tp2(T) was subjected to a taxonomic study using polyphasic approach that included morphological and biochemical characterizations, 16S rRNA gene sequence analysis, DNA-DNA hybridization, DNA G+C content analysis, comparative fatty acid profiles, and analyses of quinones and polar lipids. The 16S rRNA gene sequence of strain Tp2(T) revealed that Arthrobacter agilis DSM 20550(T) was the closest known strain (98% 16S rRNA gene sequence similarity). DNA-DNA hybridization of A. agilis DSM 20550(T) and strain Tp2(T) resulted in a DNA-DNA relatedness value of 11.9% (20.2% reciprocal). The DNA base composition of strain Tp2(T) was 69.5 mol%, which is consistent with the other recognized members of Actinobacteria that have a high G+C content in their genome. The polar lipid pattern of strain Tp2(T) consisted of diphosphatidylglycerol (major), phosphatidylglycerol and phosphatidylinositol and unknown glycolipids. The cellular fatty acids were anteiso C15:0 and anteiso C17:0 and the major menaquinone was MK-9(II-H2). The peptidoglycan type was A3α with an L-Lys-L-Thr-L-Ala3 interpeptide bridge. The above-mentioned characterization qualifies strain Tp2(T) as genotypically and phenotypically distinct from closely related species of the genus Arthrobacter with validly published names. Strain Tp2(T) is therefore proposed to represent a novel species of the genus Arthrobacter, described as Arthrobacter pityocampae sp. nov. The type strain is Tp2(T) ( = DSM 21719(T) = NCCB 100254(T)).

  16. Adipose tissue hyperplasia with enhanced adipocyte-derived stem cell activity in Tc1(C8orf4)-deleted mice

    Science.gov (United States)

    Jang, Hayoung; Kim, Minsung; Lee, Soyoung; Kim, Jungtae; Woo, Dong-Cheol; Kim, Kyung Won; Song, Kyuyoung; Lee, Inchul

    2016-01-01

    Adipose tissue hyperplasia with increased number of adipocytes is implicated in a protective rather than deleterious effect on obesity-associated metabolic disorder. It is poorly understood how the adipose tissue cellularity is regulated. Tc1 is a gene of vertebrates that regulates diverse downstream genes. Young Tc1-deleted mice fed on standard chow diet show expanded adipose tissue with smaller adipocytes in size compared to wild type controls, representing adipose tissue hyperplasia. Tc1−/− mice show enhanced glucose tolerance and reduced serum lipids. Adipocyte-derived stem cells (ADSCs) from Tc1−/− mice show enhanced proliferative and adipogenic capacity compared to wild type controls, suggesting that the adipose hyperplasia is regulated at the stem cell level. PPARγ and CEBPα are up-regulated robustly in Tc1−/− ADSCs upon induction for adipogenesis. Wisp2 and Dlk1, inhibitors of adipogenesis, are down-regulated in Tc1−/− ADSCs compared to controls. Tc1-transfected NIH3T3 cells show higher β-catenin reporter signals than vector transfected controls, suggesting a role of canonical Wnt signaling in the Tc1-dependent adipose regulation. Our data support that Tc1 is a novel regulator for adipose stem cells. Adipose tissue hyperplasia may be implicated in the metabolic regulation of Tc1−/− mice. PMID:27775060

  17. [Differential expression of DTSsa4 Tc1-like transposons in closely related populations of Baikal ciscoes].

    Science.gov (United States)

    Bychenko, O S; Sukhanova, L V; Azhikina, T L; Sverdlov, E D

    2009-01-01

    Two representatives of Baikal ciscoes - lake cisco and omul - diverged from a common ancestor as recently as 10-20 thousand years ago. We have found an increasing expression level of DTSsa4 Tc1-like DNA transposons in cisco and omul brains. The mapping of the sequences of these transposons from Salmo salar and Danio rerio genomes has shown that in some cases, these transposons are located in the 5' and 3' regions, as well as in the promoter regions of various genes. Probably, Tc1-like transposons affect the activity of neighboring genes, providing the adaptive divergence of the cisco population.

  18. Data of evolutionary structure change: 1C4TC-1DPCA [Confc[Archive

    Lifescience Database Archive (English)

    Full Text Available 1C4TC-1DPCA 1C4T 1DPC C A -----------ARSEKRVP----RKRVAERLLEAKNSTA...> ARG CA 109 VAL CA 154 ALA CA 140 1DPC... A 1DPCA IEEVPMTRLMQIGA GLU CA 181 1DPC A 1DPC... TYR CA 237 HIS CA 284 ASN CA 217 1DPC

  19. Data of evolutionary structure change: 1A6TC-1MCEA [Confc[Archive

    Lifescience Database Archive (English)

    Full Text Available 1A6TC-1MCEA 1A6T 1MCE C A QSVLSQSPAILSASPGEKVIMTCSPSSSV----SYMQWY...DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR---- PSALTQ-PPSASGSLGQSVTI...A 1MCEA SYEGSDNFVFG E EEEE...line>ALA CA 291 1MCE A 1MCEA... 2 1MCE A 1MCEA

  20. Tc1 mouse model of trisomy-21 dissociates properties of short- and long-term recognition memory.

    Science.gov (United States)

    Hall, Jessica H; Wiseman, Frances K; Fisher, Elizabeth M C; Tybulewicz, Victor L J; Harwood, John L; Good, Mark A

    2016-04-01

    The present study examined memory function in Tc1 mice, a transchromosomic model of Down syndrome (DS). Tc1 mice demonstrated an unusual delay-dependent deficit in recognition memory. More specifically, Tc1 mice showed intact immediate (30sec), impaired short-term (10-min) and intact long-term (24-h) memory for objects. A similar pattern was observed for olfactory stimuli, confirming the generality of the pattern across sensory modalities. The specificity of the behavioural deficits in Tc1 mice was confirmed using APP overexpressing mice that showed the opposite pattern of object memory deficits. In contrast to object memory, Tc1 mice showed no deficit in either immediate or long-term memory for object-in-place information. Similarly, Tc1 mice showed no deficit in short-term memory for object-location information. The latter result indicates that Tc1 mice were able to detect and react to spatial novelty at the same delay interval that was sensitive to an object novelty recognition impairment. These results demonstrate (1) that novelty detection per se and (2) the encoding of visuo-spatial information was not disrupted in adult Tc1 mice. The authors conclude that the task specific nature of the short-term recognition memory deficit suggests that the trisomy of genes on human chromosome 21 in Tc1 mice impacts on (perirhinal) cortical systems supporting short-term object and olfactory recognition memory.

  1. Wide Distribution of Closely Related, Antibiotic-Producing Arthrobacter Strains throughout the Arctic Ocean

    DEFF Research Database (Denmark)

    Wietz, Matthias; Månsson, Maria; Bowman, Jeff S.

    2012-01-01

    We isolated 16 antibiotic-producing bacterial strains throughout the central Arctic Ocean, including seven Arthrobacter spp. with almost identical 16S rRNA gene sequences. These strains were numerically rare, as revealed using 454 pyrosequencing libraries. Arthrobacter spp. produced arthrobacilins...

  2. Isolation of Arthrobacter species from the phyllosphere and demonstration of their epiphytic fitness

    NARCIS (Netherlands)

    Scheublin, T.R.; Leveau, J.H.J.

    2013-01-01

    Bacteria of the genus Arthrobacter are common inhabitants of the soil environment, but can also be recovered from leaf surfaces (the phyllosphere). Using enrichment cultures on 4-chlorophenol, we succeeded in specifically isolating Arthrobacter bacteria from ground cover vegetation in an apple orcha

  3. Arthrobacter enclensis sp. nov., isolated from sediment sample

    Digital Repository Service at National Institute of Oceanography (India)

    Dastager, S.G.; Qin, L.; Tang, S.K.; Krishnamurthi, S.; Lee, J.C.; Li, W.J.

    , genomic DNA was extracted and purified according to the method of Mar- mur (1961) with additional RNAse treatment. DNA–DNA hybridization was carried out based on principles and equa- tions described by De Ley et al. (1970) under the consid- eration.... Chin J Oceanol Lim- nol 26:166–177 De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measure- ment of DNA hybridization from renaturation rates. Eur J Bio- chem 12:133–142 Ding L, Hirose T, Yokota A (2009) Four novel Arthrobacter spe- cies...

  4. Quetzal: a transposon of the Tc1 family in the mosquito Anopheles albimanus.

    Science.gov (United States)

    Ke, Z; Grossman, G L; Cornel, A J; Collins, F H

    1996-10-01

    A member of the Tc1 family of transposable elements has been identified in the Central and South American mosquito Anopheles albimanus. The full-length Quetzal element is 1680 base pairs (bp) in length, possesses 236 bp inverted terminal repeats (ITRs), and has a single open reading frame (ORF) with the potential of encoding a 341-amino-acid (aa) protein that is similar to the transposases of other members of the Tc1 family, particularly elements described from three different Drosophila species. The approximately 10-12 copies per genome of Quetzal are found in the euchromatin of all three chromosomes of A. albimanus. One full-length clone, Que27, appears capable of encoding a complete transposase and may represent a functional copy of this element.

  5. 根霉Rhizopus sp.TC1产酶条件的研究%Fermentation conditions for cellulase production by Rhizopus sp. TC1

    Institute of Scientific and Technical Information of China (English)

    陈阿娜; 汤斌; 张庆庆; 翟光雯; 周逢云

    2006-01-01

    根据要因实验原则,选择影响因子较大的因素进行实验,初步研究了根霉Rhizopus sp.TC1的产酶条件.经实验确定优化产酶条件为:稻草:麸皮=1:1;固液比=1:3;接种量9 mL种子液/100 g湿基;温度28℃,在此条件下发酵96 h,FPA和CMC酶活分别达到17.8 IU/g、187.0 IU/g,较优化前的12.3 IU/g、131.6 IU/g分别提高了45%和42%.

  6. Tc1 Cells Percentage in Patients with Cutaneous Leishmaniasis before and after Treatment with Glucantime

    Directory of Open Access Journals (Sweden)

    M Mohajery

    2007-05-01

    Full Text Available Background: Various responses and different prognosis to specific treatment in different patients from one hand, and importance of IFN-γ producer cells on the other hand impressed us to study Tc1. Methods: The study was conducted in Ghaem Medical Center and Bu-Ali Research Institute, Mashhad University of Medical Sciences, Iran from 2001 to 2002. Lymphocytes of 36 patients were counted and cultured. Percentage of different responsible immunity cells in 29 patients, were determined by Flow Cytometry System before and after medication with glucantime (IM. Patients who showed improvement after the treatment were put into group 1 and those who did not recover were labeled group 2. In this self-control clinical trial, sampling method was consecutive non-probability and the results were analyzed by t-test consequently. Results: The percentage of Tc1 cells showed a significant increase despite of being stimulated with Phorpol-Mristate-Acetate (PMA among the whole studied patients and group 1 (P= 0.069 and P= 0.040, respectively. While no significant change was observed among patients in group 2. Conclusion: This verifies the influence of Tc1 cells for the treatment of patients with CL and perhaps the role of glucantime in improving the cell immunity response through increasing such cells.

  7. Double Star TC-1 observation of the earthward flowing plasmoids in the near magnetotail

    Institute of Scientific and Technical Information of China (English)

    ZHANG YongCun; LIU ZhenXing; SHEN Chao; DUAN SuPing; HE ZhaoHai; C M CARR; H R(E)ME4

    2007-01-01

    We analyze Double Star TC-1 magnetic field data from July to September in 2004 and find that plasmoids exist in the very near-Earth magnetotail. It is the first time that TC-1 observes the plasmoids in the magnetotail at X >-13 RE. According to the difference of the magnetic field structure in plasmoids,we choose two typical cases for our study: the magnetic flux rope on August 6 with the open magnetic field and the magnetic loop on September 14 with the closed magnetic field. Both of the cases are associated with the high speed earthward flow and the magnetic loop is related to a strong substorm. The ions can escape from the magnetic flux rope along its open field line,but the case of the closed magnetic loop can trap the ions. The earthward flowing plasmoids observed by TC-1 indicate that the multiple X-line magnetic reconnection occurs beyond the distance of X=-10 RE from the earth.

  8. Continuous tailward flow in the near-Earth magnetotail observed by TC-1 satellite

    Institute of Scientific and Technical Information of China (English)

    ZHANG LingQian; LIU ZhenXing; MA ZhiWei; PU ZuYin; WANG JiYe; SHEN Chao

    2007-01-01

    On July 11, 2004, a substorm process in the period of continuous tailward flow was observed by the joint exploration of the TC-1, IMAGE and ACE satellites. The substorm observed by the TC-1 in the near-Earth has three stages: the growth phase (from 11:43 to 12:19), the pre-expansion process (from 12:19 to 12:28) and the dipolarization process. The auroral brightening was at 12:26 recorded by the FUV instrument on IMAGE, and the dipolarization occurred two minutes later. During the 45 min period of the tailward flow, the magnetotail experienced the growth phase and the pre-expansion process. When the dipolarization process began, the TC-1 entered the plasma sheet and observed a high speed earthward flow. The field-aligned tailward flow is characterized by the low temperature and high density, which is consistent with the properties of the flow from the ionosphere detected in the near-Earth magnetotail by other satellites. The tailward flow is closely related with the southward interplanetary magnetic field (IMF), and may have an important effect on the substorm.

  9. Shrinkage of magnetosphere observed by TC-1 satellite during the high-speed solar wind stream

    Institute of Scientific and Technical Information of China (English)

    LI LiuYuan; CAO JinBin; ZHOU GuoCheng; YANG JunYing; YAN ChunXiao; ZHANG TieLong; H. REME; I. DANDOURAS; C. M. CARR

    2008-01-01

    During the interval 06:14-07:30 UT on August 24, 2005, since the Earth's magneto-pause was suddenly compressed by the persistent high-speed solar wind stream with the southward component of the interplanetary magnetic field (IMF), the magnetopause moved Inward for about 3.1 RE. Meanwhile, TC-1 satellite shifted from northern plasma sheet to the northern lobe/mantle region, although it kept Inward flying during the Interval 06:00-07:30UT. The shift of TC-1 from the plasma sheet to the lobe/mantle is caused by the simultaneous inward displacements of the plasma sheet and near-Earth lobe/mantle region, and their inward movement velocity is larger than the inward motion velocity of TC-1. The Joint inward dis-placements of the magnetopause, the lobe/mantle region and the plasma sheet indicate that the whole magnetosphere shrinks inward due to the magnetospheric compression by the high-speed solar wind stream, and the magnetospheric ions are attached to the magnetic field lines (i.e. 'frozen' in magnetic field) and move inward in the shrinking process of magnetosphere. The large shrinkage of magne-tosphere indicates that the near-Earth magnetotail compression caused by the strong solar wind dynamic pressure is much larger than its thickening caused by the southward component of the IMF, and the locations of magnetospheric regions with different plasmas vary remarkably with the variation of the solar wind dynamic pressure.

  10. Biosorption of Cr(VI)_ and Cr(III)_Arthrobacter species

    CERN Document Server

    Gelagutashvili, E; Gurielidze, M

    2011-01-01

    The biosorption of Cr(VI)_ and Cr(III)_ Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) was studied simultaneous application dialysis and atomic absorption analysis. Also biosorption of Cr(VI) in the presence of Zn(II) during growth of Arthrobacter species and Cr(III) in the presence of Mn(II) were discussed. Comparative Cr(VI)_ and Cr(III)_ Arthrobacter species shown, that Cr(III) was more effectively adsorbed by both bacterium than Cr(VI). The adsorption capacity is the same for both the Chromium-Arthrobacter systems. The biosorption constants for Cr(III) is higher than for Cr(VI) 5.7-5.9- fold for both species. Comparative Freundlich biosorption characteristics Cr(VI) Arthrobacter species of living and dry cells shown, that capacity(n) is in both cases the same(1.25,1.35). Dry cells have larger biosorption constant for both species, than living cells. Biosorption characteristics (K) and (n) for A. oxidas are without Mn(II) and in the presence of Mn(II) 2.6 x 10-4 (K), 1.37 (n) and 2...

  11. Ability of Cyanobacteria and Arthrobacter Species to Remove Gold Ions from Solution

    CERN Document Server

    Gelagutashvili, E; Rcheulichvili, A; Tsakadze, K; Bagdavadze, N; Kuchava, N; Djandjalia, M

    2012-01-01

    The biosorption of Au(III) - Spirulina platensis and Au(III) - Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) were studied at simultaneous application of dialysis and atomic absorption analysis. Also biosorption of Au(III) - Spirulina platensis at various pH were discussed. Biosorption constants for Au-cyanobacteris Spirulina platensis at different pH, and for Arthrobacter oxidas and Arthrobacter globiformis at pH=7.1 are : 1. K=3.91 x 10-4 (Au- Arthrobacter oxidas 61B, pH=7.1) 2. K=14.17 x 10-4 . (Au- Arthrobacter globiformis 151B, pH=7.1). 3. K=2.07x10-4 (Au- Spirulina platensis, pH=7.1) 4. K= 4.87x10-4 (Au- Spirulina platensis, pH=6.2) 5. K=8.7x10-4 (Au- Spirulina platensis, pH=8.4)

  12. Cluster and TC-1 observation of magnetic holes in the plasma sheet

    Directory of Open Access Journals (Sweden)

    W. J. Sun

    2012-03-01

    Full Text Available Magnetic holes with relatively small scale sizes, detected by Cluster and TC-1 in the magnetotail plasma sheet, are studied in this paper. It is found that these magnetic holes are spatial structures and they are not magnetic depressions generated by the flapping movement of the magnetotail current sheet. Most of the magnetic holes (93% were observed during intervals with Bz larger than Bx, i.e. they are more likely to occur in a dipolarized magnetic field topology. Our results also suggest that the occurrence of these magnetic holes might have a close relationship with the dipolarization process. The magnetic holes typically have a scale size comparable to the local proton Larmor radius and are accompanied by an electron energy flux enhancement at a 90° pitch angle, which is quite different from the previously observed isotropic electron distributions inside magnetic holes in the plasma sheet. It is also shown that most of the magnetic holes occur in marginally mirror-stable environments. Whether the plasma sheet magnetic holes are generated by the mirror instability related to ions or not, however, is unknown. Comparison of ratios, scale sizes and propagation direction of magnetic holes detected by Cluster and TC-1, suggests that magnetic holes observed in the vicinity of the TC-1 orbit (~7–12 RE are likely to be further developed than those observed by Cluster (~7–18 RE.

  13. Shrinkage of magnetosphere observed by TC-1 satellite during the high-speed solar wind stream

    Institute of Scientific and Technical Information of China (English)

    H.; RME; I.; DANDOURAS; C.; M.; CARR

    2008-01-01

    During the interval 06:14―07:30 UT on August 24, 2005, since the Earth’s magneto- pause was suddenly compressed by the persistent high-speed solar wind stream with the southward component of the interplanetary magnetic field (IMF), the magnetopause moved inward for about 3.1 RE. Meanwhile, TC-1 satellite shifted from northern plasma sheet to the northern lobe/mantle region, although it kept inward flying during the interval 06:00―07:30UT. The shift of TC-1 from the plasma sheet to the lobe/mantle is caused by the simultaneous inward displacements of the plasma sheet and near-Earth lobe/mantle region, and their inward movement velocity is larger than the inward motion velocity of TC-1. The joint inward dis-placements of the magnetopause, the lobe/mantle region and the plasma sheet indicate that the whole magnetosphere shrinks inward due to the magnetospheric compression by the high-speed solar wind stream, and the magnetospheric ions are attached to the magnetic field lines (i.e. ‘frozen’ in magnetic field) and move inward in the shrinking process of magnetosphere. The large shrinkage of magne-tosphere indicates that the near-Earth magnetotail compression caused by the strong solar wind dynamic pressure is much larger than its thickening caused by the southward component of the IMF, and the locations of magnetospheric regions with different plasmas vary remarkably with the variation of the solar wind dynamic pressure.

  14. Adhesion of an Amylolytic Arthrobacter sp. to Starch-Containing Plastic Films

    OpenAIRE

    1990-01-01

    Cells of the amylolytic bacterium KB-1 (thought to be an Arthrobacter sp.) adhered (∼70%) to the surface of plastic films composed of starch-poly (methylacrylate) graft copolymer (starch-PMA), but did not adhere (

  15. Ultra low frequency waves observed by Double Star TC-1 in the plasmasphere boundary layer

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The characteristic and properties of ULF waves in the plasmasphere boundary layer during two very quiet periods are present. The ULF waves were detected by Double Star TC-1 when the spacecraft passed through the plasmasphere in an outbound and inbound trajectories, respectively. A clear association between the ULF waves and periodic variations of energetic ions fluxes was observed. The ob-servations showed that the wave frequency was higher inside the plasmasphere than outside. The mechanism generating these ULF waves and possible diagnos-ing of the "classical plasmapause" location with the ULF wave were discussed.

  16. Mirror waves and mode transition observed in the magnetosheath by Double Star TC-1

    Directory of Open Access Journals (Sweden)

    J. Du

    2009-01-01

    Full Text Available The Double Star TC-1 magnetosheath pass on 26 February 2004 is used to investigate magnetic field fluctuations. Strong compressional signatures which last for more than an hour have been found near the magnetopause behind a quasi-perpendicular bow shock. These compressional structures are most likely mirror mode waves. There is a clear wave transition in the magnetosheath which probably results from the change of the interplanetary magnetic field (IMF cone angle. The wave characteristics in the magnetosheath are strongly controlled by the type of the upstream bow shock.

  17. Degradation of the Phosphonate Herbicide Glyphosate by Arthrobacter atrocyaneus ATCC 13752

    OpenAIRE

    Pipke, Rüdiger; Amrhein, Nikolaus

    1988-01-01

    Of nine authentic Arthrobacter strains tested, only A. atrocyaneus ATCC 13752 was capable of using the herbicide glyphosate [N-(phosphonomethyl)glycine] as its sole source of phosphorus. Contrary to the previously isolated Arthrobacter sp. strain GLP-1, which degrades glyphosate via sarcosine, A. atrocyaneus metabolized glyphosate to aminomethylphosphonic acid. The carbon of aminomethylphosphonic acid was entirely converted to CO2. This is the first report on glyphosate degradation by a bacte...

  18. Impairments in motor coordination without major changes in cerebellar plasticity in the Tc1 mouse model of Down syndrome.

    Science.gov (United States)

    Galante, Micaela; Jani, Harsha; Vanes, Lesley; Daniel, Hervé; Fisher, Elizabeth M C; Tybulewicz, Victor L J; Bliss, Timothy V P; Morice, Elise

    2009-04-15

    Down syndrome (DS) is a genetic disorder arising from the presence of a third copy of human chromosome 21 (Hsa21). Recently, O'Doherty et al. [An aneuploid mouse strain carrying human chromosome 21 with Down syndrome phenotypes. Science 309 (2005) 2033-2037] generated a trans-species aneuploid mouse line (Tc1) that carries an almost complete Hsa21. The Tc1 mouse is the most complete animal model for DS currently available. Tc1 mice show many features that relate to human DS, including alterations in memory, synaptic plasticity, cerebellar neuronal number, heart development and mandible size. Because motor deficits are one of the most frequently occurring features of DS, we have undertaken a detailed analysis of motor behaviour in cerebellum-dependent learning tasks that require high motor coordination and balance. In addition, basic electrophysiological properties of cerebellar circuitry and synaptic plasticity have been investigated. Our results reveal that, compared with controls, Tc1 mice exhibit a higher spontaneous locomotor activity, a reduced ability to habituate to their environments, a different gait and major deficits on several measures of motor coordination and balance in the rota rod and static rod tests. Moreover, cerebellar long-term depression is essentially normal in Tc1 mice, with only a slight difference in time course. Our observations provide further evidence that support the validity of the Tc1 mouse as a model for DS, which will help us to provide insights into the causal factors responsible for motor deficits observed in persons with DS.

  19. The large-scale magnetospheric electric field observed by Double Star TC-1

    Directory of Open Access Journals (Sweden)

    C. Carr

    2010-09-01

    Full Text Available The relationship between the average structure of the inner magnetospheric large-scale electric field and geomagnetic activity levels has been investigated by Double Star TC-1 data for radial distances ρ between 4.5 RE and 12.5 RE and MLT between 18:00 h and 06:00 h from July to October in 2004 and 2005. The sunward component of the electric field decreases monotonically as ρ increases and approaches zero as the distance off the Earth is greater than 10 RE. The dawn-dusk component is always duskward. It decreases at about 6 RE where the ring current is typically observed to be the strongest and shows strong asymmetry with respect to the magnetic local time. Surprisingly, the average electric field obtained from TC-1 for low activity is almost comparable to that observed during moderate activity, which is always duskward at the magnetotail (8 RE~12 RE.

  20. 海洋细菌TC-1对香蕉防御酶活性的影响%Effect of Antagonistic Marine-born Strain TC-1 on Five Major Defensive Enzymes in Banana

    Institute of Scientific and Technical Information of China (English)

    齐希猛; 易润华; 曾涛; 陈德贤; 蔡桂奇; 陈颖

    2012-01-01

    为研究海洋生防细菌TC-1对盆栽香蕉防治香蕉枯萎病的诱导抗病机理,通过盆栽试验,不对香蕉苗浇灌TC-1也不接种香蕉枯萎病菌、仅浇灌TC-1、仅接种病原菌和既浇灌TC-1又接种病原菌等4种处理后,测定并比较不同处理的香蕉苗体内5种防御酶活性的差异,探讨生防菌的诱导抗病作用.在未接种香蕉枯萎病菌时,海洋细菌TC-1处理的香蕉苗与未处理的5种防御酶活性没有显著差异(P>0.05).在接种香蕉枯萎病菌时,用TC-1处理与未处理的对照相比,香蕉苗防御酶活性有显著提高:浇灌TC-1菌液6天后,过氧化物酶和多酚氧化酶活性分别提高了248%和12%;9天后,苯丙氨酸解氨酶和超氧化物歧化酶活性分别提高了16%和10%; 12天后,过氧化氢酶活性提高了363%.结果表明菌株TC-1可诱导提高香蕉植株CAT、POD、PPO、PAL、SOD 5种防御酶活性抵抗香蕉枯萎病菌的侵染.%In order to research the inducible resistance mechanism of marine biocontrol bacteria TC-1 against the banana vasicular wilt in the potted trial. The inducible resistance function of TC-1 was explored by comparing the differences of five defense enzymes activities of banana seedling, which were treated via four methods. No treatment was given in normal control group, inducing with fermentation broth of TC-1, inoculating with spore suspension of Fusarium oxysporum f. Sp. Cubense race 4 (FOC4), inducing after inoculating with spore suspension of FOC4. The results showed that there were no significant differences on the five kinds of defense enzymes activities in unvaccinated bananas between banana seedlings treated with marine bacteria TC-1 and seedlings with untreated (P>0.05). The five kinds of defense enzymes activities were significantly induced in the banana seedlings inoculated FOC4 after treated with TC-1. The activities of POD and PPO in leaf were respectively increased 248% and 12% at 6 day after treatment (DAT

  1. Degradation of 4-chlorobenzoic acid by Arthrobacter sp

    Energy Technology Data Exchange (ETDEWEB)

    Marks, T.S.; Smith, A.R.W.; Quirk, A.V.

    1984-11-01

    A mixed population, enriched and established in a defined medium, from a sewage sludge inoculum was capable of complete mineralization of 4-chlorobenzoate. An organism, identified as Arthrobacter sp., was isolated from the consortium and shown to be capable of utilizing 4-chlorobenzoate as the sole carbon and energy source in pure culture. This organism (strain TM-1), dehalogenated 4-chlorobenzoate as the initial step in the degradative pathway. The production, 4-hydroxybenzoate, was further metabolized via protocatechuate. The ability of strain TM-1 to degrade 4-chlorobenzoate in liquid medium at 25/sup 0/C was improved by the use of continuous culture and repeated sequential subculturing. Other chlorinated benzoates and the parent compound benzoate did not support growth of strain TM-1. An active cell extract was prepared and shown to dehalogenate 4-chloro-, 4-fluoro-, and 4-bromobenzoate. Dehalogenase activity had an optimum pH of 6.8 and an optimum temperature of 20/sup 0/C and was inhibited by dissolved oxygen and stimulated by manganese (Mn/sup 2 +/). Strain improvement resulted in an increase in the specific activity of the cell extract from 0.09 to 0.85 nmol of 4-hydroxybenzoate per min per mg of protein and a decrease in the doubling time of the organism from 50 to 1.6 h. 18 references, 3 figures, 2 tables.

  2. Erythema caused by a localised skin infection with Arthrobacter mysorens

    Directory of Open Access Journals (Sweden)

    Chakraborty Trinad

    2010-12-01

    Full Text Available Abstract Background Skin erythemas of unknown origin are a frequent reason for consulting the general practitioner or dermatologist. Case presentation Here we report a case of an erythema resembling the erythema migrans manifestation of Lyme disease, but with atypical symptoms like persistent pruritus. The patient had no history of a recent tick-bite but displayed a positive serology for an advanced stage of Lyme borreliosis, which stood in contrast to the clinical manifestation of erythema migrans as a symptom of early Lyme disease. Three skin swabs and soil samples, collected in the area where the patient possibly acquired the infection, were examined by bacterial and fungal culture methods. Microorganisms were identified by using 16 S rRNA gene sequencing and bioinformatics. The patient and soil isolates were compared by employing RAPD analysis. The serum samples of the patient were examined by immunoblotting. Arthrobacter mysorens, a soil bacterium, was isolated from the collected skin and soil samples. The identity of both isolates was determined by molecular fingerprinting methods. A. mysorens was proven to be causative for the erythema by direct isolation from the affected skin and a positive serology, thus explaining the atypical appearance of the erythema compared to erythema migrans caused by Borrelia infection. Conclusions Infections with A.mysorens might be underreported and microbiological diagnostic techniques should be applied in cases of patients with unclear erythemas, resembling erythema migrans, without a history of tick bites.

  3. Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudoglutamicibacter gen. nov., Paenarthrobacter gen. nov. and Pseudarthrobacter gen. nov., and emended description of Arthrobacter roseus.

    Science.gov (United States)

    Busse, Hans-Jürgen

    2016-01-01

    In this paper, the taxonomy of the genus Arthrobacter is discussed, from its first description in 1947 to the present state. Emphasis is given to intrageneric phylogeny and chemotaxonomic characteristics, concentrating on quinone systems, peptidoglycan compositions and polar lipid profiles. Internal groups within the genus Arthrobacter indicated from homogeneous chemotaxonomic traits and corresponding to phylogenetic grouping and/or high 16S rRNA gene sequence similarities are highlighted. Furthermore, polar lipid profiles and quinone systems of selected species are shown, filling some gaps concerning these chemotaxonomic traits. Based on phylogenetic groupings, 16S rRNA gene sequence similarities and homogeneity in peptidoglycan types, quinone systems and polar lipid profiles, a description of the genus Arthrobacter sensu lato and an emended description of Arthrobacter roseus are provided. Furthermore, reclassifications of selected species of the genus Arthrobacter into novel genera are proposed, namely Glutamicibacter gen. nov. (nine species), Paeniglutamicibacter gen. nov. (six species), Pseudoglutamicibacter gen. nov. (two species), Paenarthrobacter gen. nov. (six species) and Pseudarthrobacter gen. nov. (ten species).

  4. Reclassification of Arthrobacter sanguinis (Mages et al. 2009) as Haematomicrobium sanguinis gen. nov., comb. nov.

    Science.gov (United States)

    Schumann, Peter; Busse, Hans-Jürgen

    2016-12-29

    Due to its separate position within the genus Arthrobacter in many published phylogenetic trees and its incomplete chemotaxonomic characterization the type strain of Arthrobacter sanguinis was subjected to analysis of its chemotaxonomic traits including quinone system, polar lipid profile, peptidoglycan structure and fatty acid profile. The fatty acid profile consisted of the major compounds (>10 %) iso-C15:0, anteiso-C15:0 and anteiso-C17:0. It showed a quinone system with the predominating menaquinone MK-9(H2). Both, fatty acid profile and quinone system are in line with the description of the genus Arthrobacter. The peptidoglycan type was L-Lys - L-Ala - Gly (A11.50) which is unique within the genus Arthrobacter sensu lato and also among Arthrobacter species recently reclassified in the genera Sinomonas, Paenarthrobacter and Pseudarthrobacter. The polar lipid profile was very complex and unique among the group of taxa in containing relatively high proportions of several unidentified lipids. In conclusion from its phylogenetic position and its chemotaxonomic distinguishability from related taxa here the reclassification of A. sanguinis in a new genus and species, Haematomicrobium sanguinis gen. nov., comb. nov, is proposed. The type strain is 741T (=CCUG 46407T=DSM 21259T).

  5. Application of NAA Method to Study Chromium Uptake by Arthrobacter oxydans

    CERN Document Server

    Tsibakhashvili, N Ya; Kalabegishvili, T L; Kirkesali, E I; Frontasyeva, M V; Pomyakushina, E V; Pavlov, S S

    2002-01-01

    To study chromium uptake by Arthrobacter oxydans (Cr(VI)-reducer bacteria isolated from Columbia basalt rocks, USA) instrumental neutron activation analysis method was applied. It was established that chromate accumulation is dose-dependent and it is more intesive in the interval of concentrations of Cr(VI) (10-50 mg/l). At low concentrations of Cr(VI) (up to 50 mg/l) the most intensive formation of Cr(V) was also found (using ESR method). Besides, it was estimated that reduction from Cr(VI) to Cr(V) is faster process than the uptake of Cr(VI). According to ENAA measurements Cr(III), in constant to Cr(VI), is not accumulated in Arthrobacter oxydans cells up to concentration of 200 mg/l. Using epithermal neutron activation analysis the background levels of 17 major, minor and trace elements were determined in Arthrobacter oxydans.

  6. Deformation behavior of TC1 titanium alloy sheet under double-sided pressure

    Institute of Scientific and Technical Information of China (English)

    WANG Zhong-jin; SONG Hui; WANG Zhe

    2008-01-01

    In order to investigate the influence of normal stress through thickness on the formability of sheet metal, the viscous pressure bulge(VPB) tests of an annealed TC1 titanium alloy sheet were carried out under two different conditions: double-sided pressure bulging and conventional single-sided pressure bulging. The automated strain analysis, measurement environment (ASAME) and scanning electron microscope(SEM) were used to study the strain distributions and the fracture morphology of bulged specimens. It is found that thickness strain is increased for double-sided pressure bulging specimens, and the limiting dome height(LDH) of double-sided pressure bulging specimens is increased by 31.8% compared with conventional single-sided pressure bulging specimens. The dimples in fracture surface for double-sided pressure bulging specimens are larger and deeper than those for conventional single-sided pressure bulging specimens. The results indicate that normal stress through thickness is helpful in improving the formability of titanium alloy sheet metal.

  7. STANDARDIZING THE EXTRACTION AND EVALUATION OF ANTIMICROBIAL FRACTION FROM STREPTOMYCES SP. TC1 AGAINST XANTHOMONAS ORYZAE PV. ORYZAE

    Directory of Open Access Journals (Sweden)

    NANJUNDAN JAIVEL*, RAMASAMY RAJESH AND PONNUSAMY MARIMUTHU

    2014-08-01

    Full Text Available Streptomyces are prokaryotic microorganisms capable of producing a wide range of secondary metabolites has the capacity to fight with the competing plant pathogens and suppress the growth of them. A promising Streptomyces sp. TC1 isolate exhibited antimicrobial activity against bacterial leaf blight pathogen Xanthomonas oryzae pv. oryzae under in vitro conditions. The antimicrobial activity of TC1 culture filtrate was found to be higher at seven days of incubation. The optimized extraction of antimicrobial fractions from the culture filtrate was obtained with ethyl acetate solvent. Adjusting the pH of the culture filtrate to 3 prior to extraction process resulted in increased recovery of antimicrobial fractions. The crude antimicrobial fraction obtained from the TC1 fermentation broth exhibited a minimum inhibitory concentration value of 300 µg/ml against the test pathogen Xanthomonas oryzae pv. oryzae. The antimicrobial activity results including agar well diffusion assay and MIC experiments strongly recommend that the Streptomyces sp. TC1 can be explored for antimicrobial metabolites for bacterial blight disease control in rice.

  8. Sleep-like behavior and 24-h rhythm disruption in the Tc1 mouse model of Down syndrome.

    Science.gov (United States)

    Heise, I; Fisher, S P; Banks, G T; Wells, S; Peirson, S N; Foster, R G; Nolan, P M

    2015-02-01

    Down syndrome is a common disorder associated with intellectual disability in humans. Among a variety of severe health problems, patients with Down syndrome exhibit disrupted sleep and abnormal 24-h rest/activity patterns. The transchromosomic mouse model of Down syndrome, Tc1, is a trans-species mouse model for Down syndrome, carrying most of human chromosome 21 in addition to the normal complement of mouse chromosomes and expresses many of the phenotypes characteristic of Down syndrome. To date, however, sleep and circadian rhythms have not been characterized in Tc1 mice. Using both circadian wheel-running analysis and video-based sleep scoring, we showed that these mice exhibited fragmented patterns of sleep-like behaviour during the light phase of a 12:12-h light/dark (LD) cycle with an extended period of continuous wakefulness at the beginning of the dark phase. Moreover, an acute light pulse during night-time was less effective in inducing sleep-like behaviour in Tc1 animals than in wild-type controls. In wheel-running analysis, free running in constant light (LL) or constant darkness (DD) showed no changes in the circadian period of Tc1 animals although they did express subtle behavioural differences including a reduction in total distance travelled on the wheel and differences in the acrophase of activity in LD and in DD. Our data confirm that Tc1 mice express sleep-related phenotypes that are comparable with those seen in Down syndrome patients with moderate disruptions in rest/activity patterns and hyperactive episodes, while circadian period under constant lighting conditions is essentially unaffected.

  9. Potential Degradation of Swainsonine by Intracellular Enzymes of Arthrobacter sp. HW08

    Directory of Open Access Journals (Sweden)

    Haili Li

    2013-11-01

    Full Text Available Swainsonine (SW is a toxin produced by locoweeds and harmful to the livestock industry. Degrading SW by Arthrobacter sp. HW08 was demonstrated as a promising way to deal with SW poisoning. However, it is unknown which part of the subcellular enzymes in Arthrobacter sp. HW08 is responsible for biodegrading SW and whether the metabolites are atoxic. In this study, intracellular and extracellular enzymes of Arthrobacter sp. HW08 were isolated and their enzyme activity was evaluated. The metabolites were fed to mice, and physiological and histological properties of the treated mice were investigated. The results showed that only intracellular enzyme of Arthrobacter sp. HW08 (IEHW08 could degrade SW efficiently. Compared with mice in SW treatment group, mice in SW + IEHW08 treatment group (1 increased their body weights; (2 showed higher number of platelets and lower number of white blood cells; (3 decreased the levels of creatinine, urea nitrogen, alanine transaminase and aspartate aminotransferase in serum; (4 reduced the number of vacuolated cells in cerebellum, liver and kidney. All these data demonstrate that IEHW08 was potentially safe for mice, while keeping the capacity of degrading SW. This study indicates a possible application of IEHW08 as an additive in the livestock industry to protect animals from SW poisoning.

  10. Biodegradation kinetics of 4-fluorocinnamic acid by a consortium of Arthrobacter and Ralstonia strains

    NARCIS (Netherlands)

    Hasan, Syed A.; Wietzes, Piet; Janssen, Dick B.

    2012-01-01

    Arthrobacter sp. strain G1 is able to grow on 4-fluorocinnamic acid (4-FCA) as sole carbon source. The organism converts 4-FCA into 4-fluorobenzoic acid (4-FBA) and utilizes the two-carbon side-chain for growth with some formation of 4-fluoroacetophenone as a dead-end side product. We also have isol

  11. Arthrobacter luteus restriction endonuclease cleavage map of X174 RF DNA

    NARCIS (Netherlands)

    Vereijken, J.M.; Mansfeld, A.D.M. van; Baas, P.D.; Jansz, H.S.

    1975-01-01

    Cleavage of X174 RF DNA with the restriction endonuclease from Arthrobacter luteus (Alu I) produces 23 fragments of approximately 24–1100 base pairs in length. The order of most of these fragments has been established by digestion of Haemophilus influenzae Rd (Hind II) and Haemophilus aegyptius (Hae

  12. CLONING AND CHARACTERIZATION OF THE PHTHALATE CATABOLISM REGION OF PRE1 OF ARTHROBACTER KEYSERI 12B

    Science.gov (United States)

    o-Phthalate (benzene-1,2-dicarboxylate) is a central intermediate in the bacterial degradation of phthalate ester plasticizers as well as of a number of fused-ring polycyclic aromatic hydrocarbons found in fossil fuels. In Arthrobacter keyseri 12B, the genes encoding catabolism o...

  13. Telepresence teacher professional development for physics and math constructs focused on US and Thai classrooms' TC-1 slinky seismometer networks

    Science.gov (United States)

    Livelybrooks, D.; Parris, B. A.; Cook, A.; Kant, M.; Wogan, N.; Zeryck, A.; Tulyatid, D.; Toomey, D. R.

    2015-12-01

    As part of the Broader Impacts of the Cascadia Initiative, a seismic study of the Cascadia margin, and the Magnetotelluric Observations of Cascadia using a Huge Array (MOCHA) collaboration we have developed school- and museum/library-based networks of TC-1 educational seismometers. The TC-1 is constructed such that its 'guts' are visible through an transparent acrylic outer cylinder, thus it is an excellent demonstration of how fundamental physics constructs can be leveraged to design and operate a vertical-channel seismometer capable of recording signals from large earthquakes world-wide. TC-1 (aka 'slinky seismometer') networks therefore serve as the application for projects-based learning (PBL) physics and data science instruction in Oregon and Thai classrooms. The TC-1 acts as a simple harmonic oscillator, employing electromagnetic induction of a moving magnet within a wire coil. Movement of the lower magnet within an electrically conductive pipe dampens motion such that P-, S- and Surface wave phases can be identified. Further, jAmaSeis software can be configured to simultaneously show live signals from three TC-1s and has tools necessary to pick phases for earthquake signals and, thus, locate earthquake epicenters. Leveraging a long-standing collaboration between the Royal Thai Distance Learning Foundation and the University of Oregon, we developed five, 2-hour, two-way teacher professional development sessions that were transmitted live to Thai K-12 teachers and others starting mid-August, 2015. As an example, one session emphasized hands-on activities to analyze the effect of spring stiffness, inertial mass and initial displacement on the resonance frequency of a simple oscillator. Another pedagogical goal was to elucidate how math is important to understanding the analysis of seismic data, for example, how cross-correlation is useful for distinguishing between genuine earthquake signals and, say, a truck rolling by a TC-1 station. UO graduate and

  14. Dosage of the Abcg1-U2af1 region modifies locomotor and cognitive deficits observed in the Tc1 mouse model of Down syndrome.

    Directory of Open Access Journals (Sweden)

    Damien Marechal

    Full Text Available Down syndrome (DS results from one extra copy of human chromosome 21 and leads to several alterations including intellectual disabilities and locomotor defects. The transchromosomic Tc1 mouse model carrying an extra freely-segregating copy of human chromosome 21 was developed to better characterize the relation between genotype and phenotype in DS. The Tc1 mouse exhibits several locomotor and cognitive deficits related to DS. In this report we analyzed the contribution of the genetic dosage of 13 conserved mouse genes located between Abcg1 and U2af1, in the telomeric part of Hsa21. We used the Ms2Yah model carrying a deletion of the corresponding interval in the mouse genome to rescue gene dosage in the Tc1/Ms2Yah compound mice to determine how the different behavioral phenotypes are affected. We detected subtle changes with the Tc1/Ms2Yah mice performing better than the Tc1 individuals in the reversal paradigm of the Morris water maze. We also found that Tc1/Ms2Yah compound mutants performed better in the rotarod than the Tc1 mice. This data support the impact of genes from the Abcg1-U2af1 region as modifiers of Tc1-dependent memory and locomotor phenotypes. Our results emphasize the complex interactions between triplicated genes inducing DS features.

  15. Abundances in planetary nebulae: NGC 1535, NGC 6629, He2-108, and Tc1

    Science.gov (United States)

    Pottasch, S. R.; Surendiranath, R.; Bernard-Salas, J.

    2011-07-01

    Context. Models have been made of stars of a given mass that produce planetary nebulae that usually begin on the AGB (although they may begin earlier) and run to the white dwarf stage. While these models cover the so-called dredge-up phases when nuclear reactions occur and the newly formed products are brought to the surface, it is important to compare the abundances predicted by the models with the abundances actually observed in PNe. Aims: The aim of the paper is to determine the abundances in a group of PNe with uniform morphological and kinematic properties. The PNe we discuss are circular with rather low-temperature central stars and are rather far from the galactic plane. We discuss the effect these abundances have on determining the evolution of the central stars of these PNe. Methods: The mid-infrared spectra of the planetary nebulae NGC 1535, NGC 6629, He2-108, and Tc1 (IC 1266) taken with the Spitzer Space Telescope are presented. These spectra were combined with the ultraviolet IUE spectra and with the spectra in the visual wavelength region to obtain complete, extinction-corrected spectra. The chemical composition of these nebulae is then found by directly calculating and adding individual ion abundances. For two of these PNe, we attempted to reproduce the observed spectrum by making a model nebula. This proved impossible for one of the nebulae and the reason for this is discussed. The resulting abundances are more accurate than earlier studies for several reasons, the most important is that inclusion of the far infrared spectra increases the number of observed ions and makes it possible to include the nebular temperature gradient in the abundance calculations. Results: The abundances of the above four PNe have been determined and compared to the abundances found in five other PNe with similar properties studied earlier. These abundances are further compared with values predicted by the models of Karakas (2003). From this comparison we conclude that the

  16. Role of histamine H3 receptor in glucagon-secreting αTC1.6 cells.

    Science.gov (United States)

    Nakamura, Tadaho; Yoshikawa, Takeo; Naganuma, Fumito; Mohsen, Attayeb; Iida, Tomomitsu; Miura, Yamato; Sugawara, Akira; Yanai, Kazuhiko

    2015-01-01

    Pancreatic α-cells secrete glucagon to maintain energy homeostasis. Although histamine has an important role in energy homeostasis, the expression and function of histamine receptors in pancreatic α-cells remains unknown. We found that the histamine H3 receptor (H3R) was expressed in mouse pancreatic α-cells and αTC1.6 cells, a mouse pancreatic α-cell line. H3R inhibited glucagon secretion from αTC1.6 cells by inhibiting an increase in intracellular Ca(2+) concentration. We also found that immepip, a selective H3R agonist, decreased serum glucagon concentration in rats. These results suggest that H3R modulates glucagon secretion from pancreatic α-cells.

  17. Ethyl pyruvate ameliorates experimental colitis in mice by inhibiting the HMGB1-Th17 and Th1/Tc1 responses.

    Science.gov (United States)

    Guo, Xianghua; Guo, Runhua; Luo, Xia; Zhou, Lian

    2015-12-01

    Ethyl pyruvate (EP), a simple lipophilic pyruvate ester, has demonstrated protective effects against murine colitis through inhibition the release of inflammatory factor high-mobility group protein box 1 (HMGB1). HMGB1 has been implicated in several autoimmune diseases by inducing Thl and Thl7 cells activation. This study was designed to investigate whether EP amelioration of murine colitis is related to the blocking of the HMGB1-Th17/Thl pathway. We induced murine colitis by intrarectal administration of 2, 4, 6-trinitrobenzene sulfonic acid (TNBS). Ethyl pyruvate was injected intraperitoneally once a day for 7days. One week after intrarectal challenge with TNBS, HMGB1, IL-17 and IFN-γ protein levels were remarkably increased following severe colon inflammation. Meanwhile, excessive infiltration of Th17 cells in colonic tissues, and an upregulated proportion of Th17 and Th1/Tc1 cells in the spleen and mesenteric lymph nodes (MLN) were found in the TNBS-treated group compared to the control group. Treatment with the HMGB1 inhibitor EP not only remarkably improved colon pathological damage, but also significantly reduced the number of Th17 cells in the local tissues of the colitis-induced mice. Furthermore, the percentage of Th1/Tc1 and Th17 cells in the spleen and MLN, as well as levels of serum IFN-γ and IL-17A, were all markedly decreased in the EP-treated group. Moreover, in vitro, our results showed that EP in a dose dependent manner inhibited HMGB1 release induced by LPS from CT26 cells (murine colon adenocarcinoma cell line). These results suggest that HMGB1 contributes to the development of murine colitis by promoting the Th17 and Th1/Tc1 responses, and that EP can significantly inhibit HMGB1-Th17 and Thl/Tc1 pathway activation, which may provide better protection to mice with TNBS-induced colitis.

  18. Isolation, purification and characterization of xylanase produced by Arthrobacter sp. MTCC 5214 when grown in solid-state fermentation

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, R.; Bhosle, N.B.

    Thermoalkalophilic Arthrobacter sp. produced extracellular xylanase, when wheat bran, rice husk, rice bran and bagassae were used as carbon source under solid-state fermentation (SSF). The xylanase enzyme was isolated by ammonium sulfate (80...

  19. Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse

    DEFF Research Database (Denmark)

    Herschend, Jakob; Raghupathi, Prem Krishnan; Røder, Henriette Lyng;

    2016-01-01

    We report the draft genome sequence ofArthrobacter antarcticusstrain W2, which was isolated from a wall of a small slaughterhouse in Denmark. The 4.43-Mb genome sequence was assembled into 170 contigs....

  20. Auditory function in the Tc1 mouse model of down syndrome suggests a limited region of human chromosome 21 involved in otitis media.

    Directory of Open Access Journals (Sweden)

    Stephanie Kuhn

    Full Text Available Down syndrome is one of the most common congenital disorders leading to a wide range of health problems in humans, including frequent otitis media. The Tc1 mouse carries a significant part of human chromosome 21 (Hsa21 in addition to the full set of mouse chromosomes and shares many phenotypes observed in humans affected by Down syndrome with trisomy of chromosome 21. However, it is unknown whether Tc1 mice exhibit a hearing phenotype and might thus represent a good model for understanding the hearing loss that is common in Down syndrome. In this study we carried out a structural and functional assessment of hearing in Tc1 mice. Auditory brainstem response (ABR measurements in Tc1 mice showed normal thresholds compared to littermate controls and ABR waveform latencies and amplitudes were equivalent to controls. The gross anatomy of the middle and inner ears was also similar between Tc1 and control mice. The physiological properties of cochlear sensory receptors (inner and outer hair cells: IHCs and OHCs were investigated using single-cell patch clamp recordings from the acutely dissected cochleae. Adult Tc1 IHCs exhibited normal resting membrane potentials and expressed all K(+ currents characteristic of control hair cells. However, the size of the large conductance (BK Ca(2+ activated K(+ current (I(K,f, which enables rapid voltage responses essential for accurate sound encoding, was increased in Tc1 IHCs. All physiological properties investigated in OHCs were indistinguishable between the two genotypes. The normal functional hearing and the gross structural anatomy of the middle and inner ears in the Tc1 mouse contrast to that observed in the Ts65Dn model of Down syndrome which shows otitis media. Genes that are trisomic in Ts65Dn but disomic in Tc1 may predispose to otitis media when an additional copy is active.

  1. Human Thyroid Cancer-1 (TC-1 is a vertebrate specific oncogenic protein that protects against copper and pro-apoptotic genes in yeast

    Directory of Open Access Journals (Sweden)

    Natalie K. Jones

    2015-07-01

    Full Text Available The human Thyroid Cancer-1 (hTC-1 protein, also known as C8orf4 was initially identified as a gene that was up-regulated in human thyroid cancer. Here we show that hTC-1 is a peptide that prevents the effects of over-expressing Bax in yeast. Analysis of the 106 residues of hTC-1 in available protein databases revealed direct orthologues in jawed-vertebrates, including mammals, frogs, fish and sharks. No TC-1 orthologue was detected in lower organisms, including yeast. Here we show that TC-1 is a general pro-survival peptide since it prevents the growth- and cell death-inducing effects of copper in yeast. Human TC-1 also prevented the deleterious effects that occur due to the over-expression of a number of key pro-apoptotic peptides, including YCA1, YBH3, NUC1, and AIF1. Even though the protective effects were more pronounced with the over-expression of YBH3 and YCA1, hTC-1 could still protect yeast mutants lacking YBH3 and YCA1 from the effects of copper sulfate. This suggests that the protective effects of TC-1 are not limited to specific pathways or processes. Taken together, our results indicate that hTC-1 is a pro-survival protein that retains its function when heterologously expressed in yeast. Thus yeast is a useful model to characterize the potential roles in cell death and survival of cancer related genes.

  2. Bacteremia Due to Arthrobacter creatinolyticus in an Elderly Diabetic Man with Acute Cholangitis.

    Science.gov (United States)

    Yamamoto, Kei; Hayakawa, Kayoko; Nagamatsu, Maki; Fujiya, Yoshihiro; Mawatari, Momoko; Kutsuna, Satoshi; Takeshita, Nozomi; Tamura, Saeko; Mezaki, Kazuhisa; Ohmagari, Norio

    2017-03-24

    An 87-year-old man with poorly controlled diabetic mellitus presented with fever, bedsores, and elevated hepatobiliary enzyme levels. He was diagnosed with bacteremia with acute cholangitis due to Arthrobacter species, which are Gram-positive, aerobic, catalase-positive, coryneform bacteria belonging to the family Microbacteriaceae. Doripenem and subsequencial sulbactam/ampicillin treatment were used for the acute cholangitis, and the bacteremia was treated with a 2-week course of vancomycin. The bacteremia was misidentified by the phenotyping assay (API Coryne test), but was identified as Arthrobacter creatinolyticus by 16S rRNA and matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry. To our knowledge, this is the first report of a human case of A. creatinolyticus bacteremia.

  3. An Arthrobacter spp. bacteremia leading to fetal death and maternal disseminated intravascular coagulation.

    Science.gov (United States)

    Shigeta, Naoya; Ozaki, Kimiaki; Hori, Kensuke; Ito, Kimihiko; Nakayama, Masahiro; Nakahira, Kumiko; Yanagihara, Itaru

    2013-02-01

    A 34-year-old parous woman developed high fever and threatened preterm labor after a 1-day trip, for which she was receiving prenatal care at a hospital. Three days after onset, at 24 4/7 weeks of gestation, she was transferred to our hospital in an emergency. Soon after the woman's arrival at our hospital, the infant was spontaneously stillborn via a transvaginal delivery. Laboratory tests revealed severe maternal disseminated intravascular coagulation with renal and liver insufficiency. Histopathologic examination of the placenta revealed vast fibrin deposition and remarkable neutrophilic infiltration in the intervillous space, suggesting a rare bacterial infection caused by Arthrobacter spp. The bacteria were predominantly detected in the placenta and maternal blood serum by common bacterial 16S rRNA sequencing after polymerase chain reaction amplification. We report the first case, to our knowledge, of bacteremia with Arthrobacter spp., which may lead to maternal disseminated intravascular coagulation and intrauterine fetal death.

  4. Improving the Survival of Arthrobacter sp., CW9 during Spray Drying Monitored by Scan Electric Microscope

    Directory of Open Access Journals (Sweden)

    Zhenqiang Xia

    2014-03-01

    Full Text Available The culture of an aquaculture probiotic, i.e., Arthrobacter sp., CW9, was spray dried with different carriers/protectants, in which Scan Electric Microscope (SEM was used to analyze the surface of micro-paticles produced by spray-drying. Matrix of protectants, inlet temperature and feed rate were optimized according to the survival rate after spray drying. Scanning electron micrographs showed that cracks formed on the particle surface were a key factor in enhancing bacteria survival during spray-drying. Span-60 had synergism with Skim Milk Powder (SMP: trehalose (7.5%: 7.5%, w/v in protecting Arthrobacter sp., CW9 bacteria from heat injury, unlike SMP with trehalose. Particle size is an important factor influencing bacteria survival during spray drying and particle size itself was influenced by certain additives.

  5. Improving the Survival of Arthrobacter sp., CW9 during Spray Drying Monitored by Scan Electric Microscope

    OpenAIRE

    Zhenqiang Xia; Ming Zhu; Yanqiu Zhang

    2014-01-01

    The culture of an aquaculture probiotic, i.e., Arthrobacter sp., CW9, was spray dried with different carriers/protectants, in which Scan Electric Microscope (SEM) was used to analyze the surface of micro-paticles produced by spray-drying. Matrix of protectants, inlet temperature and feed rate were optimized according to the survival rate after spray drying. Scanning electron micrographs showed that cracks formed on the particle surface were a key factor in enhancing bacteria survival during s...

  6. Biosorption of Lead(II) by Arthrobacter sp. 25: Process Optimization and Mechanism.

    Science.gov (United States)

    Jin, Yu; Wang, Xin; Zang, Tingting; Hu, Yang; Hu, Xiaojing; Ren, Guangming; Xu, Xiuhong; Qu, Juanjuan

    2016-08-28

    In the present work, Arthrobacter sp. 25, a lead-tolerant bacterium, was assayed to remove lead(II) from aqueous solution. The biosorption process was optimized by response surface methodology (RSM) based on the Box-Behnken design. The relationships between dependent and independent variables were quantitatively determined by second-order polynomial equation and 3D response surface plots. The biosorption mechanism was explored by characterization of the biosorbent before and after biosorption using atomic force microscopy (AFM), scanning electron microscopy, energy dispersive X-ray spectroscopy, X-ray diffraction, and Fourier transform infrared spectroscopy. The results showed that the maximum adsorption capacity of 9.6 mg/g was obtained at the initial lead ion concentration of 108.79 mg/l, pH value of 5.75, and biosorbent dosage of 9.9 g/l (fresh weight), which was close to the theoretically expected value of 9.88 mg/g. Arthrobacter sp. 25 is an ellipsoidalshaped bacterium covered with extracellular polymeric substances. The biosorption mechanism involved physical adsorption and microprecipitation as well as ion exchange, and functional groups such as phosphoryl, hydroxyl, amino, amide, carbonyl, and phosphate groups played vital roles in adsorption. The results indicate that Arthrobacter sp. 25 may be potentially used as a biosorbent for low-concentration lead(II) removal from wastewater.

  7. New metabolic pathway for degradation of 2-nitrobenzoate by Arthrobacter sp. SPG

    Directory of Open Access Journals (Sweden)

    Pankaj Kumar Arora

    2015-06-01

    Full Text Available Arthrobacter sp. SPG utilized 2-nitrobenzoate as its sole source of carbon and energy and degraded it with accumulation of stoichiometric amounts of nitrite ions. Salicylate and catechol were detected as metabolites of the 2-nitrobenzoate degradation using high performance liquid chromatography and gas chromatography-mass spectrometry. Enzyme activities for 2-nitrobenzoate-2-monooxygenase, salicylate hydroxylase, and catechol-1,2-dioxygenase were detected in the crude extracts of the 2-nitrobenzoate-induced cells of strain SPG. The 2-nitrobenzoate-monooxygenase activity resulted in formation of salicylate and nitrite from 2-nitrobenzoate whereas salicylate hydroxylase catalyzed the conversion of salicylate to catechol. The ring-cleaving enzyme, catechol-1,2-dioxygenase cleaved catechol to cis, cis-muconic acid. Cells of strain SPG were able to degrade 2-nitrobenzoate in sterile as well as non-sterile soil microcosms. The results of microcosm studies showed that strain SPG degraded more than 90% of 2-nitrobenzoate within 10-12 days. This study clearly shows that Arthrobacter sp. SPG degraded 2-nitrobenzoate via a new pathway with formation of salicylate and catechol as metabolites. Arthrobacter sp. SPG may be used for bioremediation of 2-nitrobenzoate-contaminated sites due to its ability to degrade 2-nitrobenzoate in soil.

  8. New metabolic pathway for degradation of 2-nitrobenzoate by Arthrobacter sp. SPG

    Science.gov (United States)

    Arora, Pankaj K.; Sharma, Ashutosh

    2015-01-01

    Arthrobacter sp. SPG utilized 2-nitrobenzoate as its sole source of carbon and energy and degraded it with accumulation of stoichiometric amounts of nitrite ions. Salicylate and catechol were detected as metabolites of the 2-nitrobenzoate degradation using high performance liquid chromatography and gas chromatography–mass spectrometry. Enzyme activities for 2-nitrobenzoate-2-monooxygenase, salicylate hydroxylase, and catechol-1,2-dioxygenase were detected in the crude extracts of the 2-nitrobenzoate-induced cells of strain SPG. The 2-nitrobenzoate-monooxygenase activity resulted in formation of salicylate and nitrite from 2-nitrobenzoate, whereas salicylate hydroxylase catalyzed the conversion of salicylate to catechol. The ring-cleaving enzyme, catechol-1,2-dioxygenase cleaved catechol to cis,cis-muconic acid. Cells of strain SPG were able to degrade 2-nitrobenzoate in sterile as well as non-sterile soil microcosms. The results of microcosm studies showed that strain SPG degraded more than 90% of 2-nitrobenzoate within 10–12 days. This study clearly shows that Arthrobacter sp. SPG degraded 2-nitrobenzoate via a new pathway with formation of salicylate and catechol as metabolites. Arthrobacter sp. SPG may be used for bioremediation of 2-nitrobenzoate-contaminated sites due to its ability to degrade 2-nitrobenzoate in soil. PMID:26082768

  9. Efficacy of HPV-16 E7 Based Vaccine in a TC-1 Tumoric Animal Model of Cervical Cancer - page 483

    Directory of Open Access Journals (Sweden)

    Maryam Fazeli

    2011-01-01

    Full Text Available Objective: The human papillomavirus as an etiological agent of cervical cancer doesnot grow adequately in tissue culture systems. The tumor cell line TC-1 continuously expressesthe E6 and E7 oncogenic proteins of HPV, and is considered a suitable tool inlaboratory investigations and vaccine researches against cervical cancer.Materials and Methods: The TC-1 cell line was grown in RPMI 1650 supplemented with10% FBS, glutamine and antibiotics, and was used for tumor development in mice. Six toseven week-old tumor bearing C57BL/6 mice were divided into 3 groups consisting of 7mice per group. The first group received pcDNA-E7, the second group received pcDNA3,and the third group received phosphate buffered saline (PBS. The treated animals weremonitored for their tumor size progression and survival. At last, the tumoric tissues fromautopsied animals were fixed and examined with Mayer's hematoxylin and eosin (H&E.All experiments were done in accordance with guidelines of the Laboratory Animal EthicalCommission of Tarbiat Modares University. Data analysis was performed using the onewayANOVA followed by Tukey's test in both experimental and control groups. A p-value<0.05 was considered significant.Results: There were significant decreases in tumor growth; there were also improvementsin survival among mice in the treated groups (p<0.041. H&E stained sections fromuntreated mice were studied independently in a blinded fashion by two observers andshowed malignant neoplasms composed of severely pleomorphic tumor cells with nuclearenlargement, high nuclear-cytoplasmic (N/C ratios, and prominent nucleoli in solid andfascicular patterns of growth. High mitotic activity with extensive necrosis was also notedin both test and control groups.Conclusion: The TC-1 lung metastatic model can be used to test the efficacy of variousE7-based therapeutic cancer vaccine strategies for cervical cancer and the prevention ofHPV-related neoplasia.

  10. Regulation and function of transaldolase isoenzymes involved in sugar and one-carbon metabolism in the ribulose monophosphate cycle methylotroph Arthrobacter P1

    NARCIS (Netherlands)

    Levering, P.R.; Dijkhuizen, Lubbert

    1986-01-01

    In the facultative methylotroph Arthrobacter P1 the enzyme transaldolase plays an important role in both the pentose phosphate pathway and in the ribulose monophosphate cycle of formaldehyde fixation. Among gluconate-negative mutants of Arthrobacter P1 strains occurred which also were unable to grow

  11. 2,3-Dihydroxybiphenyl dioxygenase gene was first discovered in Arthrobacter sp. strain P J3

    Institute of Scientific and Technical Information of China (English)

    YANG MeiYing; MA PengDa; LI WenMing; LIU JinYing; LI Liang; ZHU XiaoJuan; WANG XingZhi

    2007-01-01

    Bacterium strain PJ3, isolated from wastewater and identified as Arthrobacter sp. bacterium based on its 16S rDNA gene, could use carbazole as the sole carbon, nitrogen and energy source. The genomic libraryof strain PJ3 was constructed and a positive clone JM109 (pUCW402) was screened out for the expression of dioxygenase by the ability to form yellow ring-fission product. A 2,3-dihydroxybiphenyl dioxygenase (23DHBD) gene of 933 bp was found in the 3360 bp exogenous fragment of pUCW402 by GenSCAN software and BLAST analysis. The phylogenetic analysis showed that 23DHBD from strain PJ3 formed a deep branch separate from a cluster containing most known 23DHBD in GenBank.Southern hybridization confirmed for the first time that the 23DHBD gene was from the genomic DNA of Arthrobacter sp. PJ3. In order to test the gene function, recombinant bacterium BL21 (pETW-8) was constructed to express 23DHBD. The expression level in BL21 (pETW-8) was highest compared with the recombinant bacteria JM109 (pUCW402) and strain PJ3. We observed that 23DHBD was not absolute specific. The enzyme activity was higher with 2,3-dihydroxybiphenyl as a substrate than with catechol.The substrate specificity assay suggested that 23DHBD was essential for cleavage of bi-cyclic aromatic compounds during the course of aromatic compound biodegradation in Arthrobacter sp. strain PJ3.

  12. Impact of phenolic substrate and growth temperature on the arthrobacter chlorophenolicus proteome

    Energy Technology Data Exchange (ETDEWEB)

    Unell, Maria; Abraham, Paul E.; Shah, Manesh; Zhang, Bing; Ruckert, Christian; VerBerkmoes, Nathan C.; Jansson, Janet K.

    2009-02-15

    We compared the Arthrobacter chlorophenolicus proteome during growth on 4-chlorophenol, 4-nitrophenol or phenol at 5 C and 28 C; both for the wild type and a mutant strain with mass spectrometry based proteomics. A label free workflow employing spectral counting identified 3749 proteins across all growth conditions, representing over 70% of the predicted genome and 739 of these proteins form the core proteome. Statistically significant differences were found in the proteomes of cells grown under different conditions including differentiation of hundreds of unknown proteins. The 4-chlorophenol-degradation pathway was confirmed, but not that for phenol.

  13. 6-hydroxy-L-nicotine from Arthrobacter nicotinovorans facilitate spatial memory formation in rats

    OpenAIRE

    Lucian Hritcu; Marius Stefan; Marius Mihasan; Roderich Brandsch

    2010-01-01

    Effects of 6-hydroxy-L-nicotine derived from nicotine catabolism in Arthrobacter nicotinovorans on learning and memory processes were examined in adult male Wistar rats. 6-hydroxy-L-nicotine (0.3 mg/kg, i.p., 7 consecutive days chronic administration) significantly increased spontaneous alternation in Y-maze task and working memory in radial arm-maze task, suggesting effects on short-term memory, without affecting long-term memory, explored by reference memory in radial arm-maze t...

  14. Accumulation of rare earth elements by siderophore-forming Arthrobacter luteolus isolated from rare earth environment of Chavara, India

    Indian Academy of Sciences (India)

    E S Challaraj Emmanuel; T Ananthi; B Anandkumar; S Maruthamuthu

    2012-03-01

    In this study, Arthrobacter luteolus, isolated from rare earth environment of Chavara (Quilon district, Kerala, India), were found to produce catechol-type siderophores. The bacterial strain accumulated rare earth elements such as samarium and scandium. The siderophores may play a role in the accumulation of rare earth elements. Catecholate siderophore and low-molecular-weight organic acids were found to be present in experiments with Arthrobacter luteolus. The influence of siderophore on the accumulation of rare earth elements by bacteria has been extensively discussed.

  15. Genetic differentiation of Arthrobacter population from heavy metal-contaminated environment

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hanbo; REN Weimin; SHAO Qiyong; DUAN Changqun

    2007-01-01

    Six samples containing extremely high concentration of Pb,Zn,and Cd were obtained from the layers of 5-10 cm and 25-30 cm three tailing piles,with ages of about 10,20 and more than 80 years,respectively.Then,48 bacterial strains were obtained from these samples,and subsequently their phylogenetic positions were determined by analysis on the partial sequence of 16S rRNA gene (fragment length ranging from 474 to 708 bp).These isolates were members of the Arthrobacter genus,phylogenetically close to A.keyseri and A.ureafaciens,with sequence ranging from 99.1%to 100%.Furthermore,genetic variation between subpopulations from different samples was revealed by analysis on their randomly amplified polymorphic DNA profile.Nei genetic distance showed that the greatest differentiation occurred between subpopulation A and C.Notably,either genetic distance between subpopulations from the layers of 5-10 cm and 25-30 cm of each tailing pile or between same layers of different tailing pile increased with the history of tailings.Moreover,correlation analysis showed that soluble Pb has a significantly negative relationship with Nei'gene diversity of subpopulation.It was assumed that soluble Pb may be responsible for the reduced genetic diversity of the Arthrobacter population.Our data provided evidence that genetic differentiation of microbial populations was consistent with the changes of environmental factors,particularly heavy metals.

  16. Arthrobacter cupressi sp. nov., an actinomycete isolated from the rhizosphere soil of Cupressus sempervirens.

    Science.gov (United States)

    Zhang, Jian; Ma, Yuchao; Yu, Huimin

    2012-11-01

    An actinobacterial strain, designated D48(T), was isolated from the rhizosphere soil of a cypress tree collected from Mianyang in Sichuan province, China. The strain was Gram-stain-positive, catalase-positive, oxidase-negative and non-motile, with lysine as the peptidoglycan diagnostic diamino acid and acetyl as the peptidoglycan acyl type. The predominant menaquinone was MK-9(H(2)); small amounts of MK-7(H(2)), MK-10(H(2)) and MK-6 were also present. The major fatty acids were anteiso-C(15:0), anteiso-C(17:0) and iso-C(16:0). The isolate underwent a rod-coccus morphological cycle, had a high DNA G+C content, was aerobic and grew between 12 and 37 °C (optimum, 28 °C). On the basis of the phenotypic and chemotaxonomic analyses, 16S rRNA gene sequence comparisons and DNA-DNA hybridization data, the isolate represents a novel species of the genus Arthrobacter, for which the name Arthrobacter cupressi sp. nov. is proposed. The type strain is D48(T) (=DSM 24664(T)=CGMCC 1.10783(T)).

  17. Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds

    NARCIS (Netherlands)

    Scheublin, T.R.; Deusch, S.; Moreno-Forero, S.K.; Müller, J.A.; van der Meer, J.R.; Leveau, J.H.J.

    2014-01-01

    Arthrobacter chlorophenolicus A6 is a Gram-positive, 4-chlorophenol degrading soil bacterium that was recently shown to be an effective colonizer of plant leaf surfaces. The genetic basis for this phyllosphere competency is unknown. In this paper, we describe the genome-wide expression profile of A.

  18. Nitrogen metabolism in the facultative methylotroph Arthrobacter P1 grown with various amines or ammonia as nitrogen sources

    NARCIS (Netherlands)

    de Boer, L.; Brouwer, J.W.; Hassel, C.W. van; Levering, Pieter; Dijkhuizen, L.

    1989-01-01

    The metabolism of trimethylamine (TMA) and dimethylamine (DMA) in Arthrobacter P1 involved the enzymes TMA monooxygenase and trimethylamine-N-oxide (TMA-NO) demethylase, and DMA monooxygenase, respectively. The methylamine and formaldehyde produced were further metabolized via a primary amine oxidas

  19. Growth of Arthrobacter sp. strain JBH1 on nitroglycerin as the sole source of carbon and nitrogen.

    Science.gov (United States)

    Husserl, Johana; Spain, Jim C; Hughes, Joseph B

    2010-03-01

    Arthrobacter sp. strain JBH1 was isolated from nitroglycerin-contaminated soil by selective enrichment. Detection of transient intermediates and simultaneous adaptation studies with potential intermediates indicated that the degradation pathway involves the conversion of nitroglycerin to glycerol via 1,2-dinitroglycerin and 1-mononitroglycerin, with concomitant release of nitrite. Glycerol then serves as the source of carbon and energy.

  20. Analysis of Two Gene Clusters Involved in the Degradation of 4-Fluorophenol by Arthrobacter sp Strain IF1

    NARCIS (Netherlands)

    Ferreira, Maria Isabel M.; Iida, Toshiya; Hasan, Syed A.; Nakamura, Kaoru; Fraaije, Marco W.; Janssen, Dick B.; Kudo, Toshiaki

    2009-01-01

    Arthrobacter sp. strain IF1 is able to grow on 4-fluorophenol (4-FP) as a sole source of carbon and energy. To clone the 4-FP degradation genes, DNA libraries were constructed and screened with a probe obtained by PCR using primers designed on the basis of conserved regions of aromatic two-component

  1. Class 1 integrons and tetracycline resistance genes in Alcaligenes, Arthrobacter, and Pseudomonas spp. isolated from pigsties and manured soil

    DEFF Research Database (Denmark)

    Agersø, Yvonne; Sandvang, Dorthe

    2005-01-01

    Escherichia coli, Enterobacter spp., Arthrobacter spp., Alcaligenes spp., Pseudomonas spp., and Corynebacterium glutamicum. The 257 isolates were screened for in-1. Eighty-one of the gram-negative isolates were also screened for the Tc-r genes tet(A), tet(B), and tet(C), and all (n = 72) gram...

  2. Observations of lion roars in the magnetosheath by the STAFF/DWP experiment on the Double Star TC-1 spacecraft

    Directory of Open Access Journals (Sweden)

    K. H. Yearby

    2005-11-01

    Full Text Available Lion roars are intense, short duration packets of whistler mode waves, observed in the magnetosheath. They are typically seen coincident with the magnetic field minima of mirror mode waves. The orbit of the Double Star TC-1 spacecraft (570 km by 78970 km, inclination at 28.5 degrees is ideal for observations of lion roars as the spacecraft is in the magnetosheath more than 50% of the time when the apogee is on the dayside. The STAFF/DWP experiment provides the spectral matrix of the three magnetic components at 27 frequencies in the range 10 Hz to 4 kHz, with one second time resolution, and also the waveform up to 180 Hz at a low duty cycle. The characteristics of lion roars observed are reported. The maximum lion roar intensities appear higher than reported by most previous studies. The electron temperature anisotropy is estimated from the lion roar frequency ratios, and is in reasonably good agreement with plasma measurements. This indicates the presence of a trapped electron component in the mirror mode.

  3. Convective high-speed flow and field-aligned high-speed flows explored by TC-1

    Institute of Scientific and Technical Information of China (English)

    ZHANG LingQian; LIU ZhenXing; MA ZhiWei; W.BAUMJOHANN; M.W.DUNLOP4; WANG GuangJun; WANG Xiao; H.REME; C.CARR

    2008-01-01

    From June 1, 2004 to October 31, 2006, a total 465 high-speed flow events are observed by the TC-1 satellite in the near-Earth region (-13 RE < X < -9 RE, |Y|<10 RE, |2|<5 RE). Based on the angle between the flow and the magnetic field, the high-speed flow events are further divided into two types, that is,field-aligned high-speed flow (FAHF) in the plasma sheet boundary and convective bursty bulk flow (BBF) in the center plasma sheet. Among the total 465 high-speed flow events, there are 371 FAHFs,and 94 BBFs. The CHF are mainly concentrated in the plasma sheet, the intersection angle between the flow and the magnetic field is larger, the magnetic field intensity is relatively weak. The FHF are mainly distributed near the boundary layer of the plasma sheet, the intersection angle between the flow and magnetic field is smaller, and the magnetic field intensity is relatively strong. The convective BBFs have an important effect on the substorm.

  4. Preservation of Long-Term Memory and Synaptic Plasticity Despite Short-Term Impairments in the Tc1 Mouse Model of Down Syndrome

    Science.gov (United States)

    Morice, Elise; Andreae, Laura C.; Cooke, Sam F.; Vanes, Lesley; Fisher, Elizabeth M. C.; Tybulewicz, Victor L. J.; Bliss, Timothy V. P.

    2008-01-01

    Down syndrome (DS) is a genetic disorder arising from the presence of a third copy of the human chromosome 21 (Hsa21). Recently, O'Doherty and colleagues in an earlier study generated a new genetic mouse model of DS (Tc1) that carries an almost complete Hsa21. Since DS is the most common genetic cause of mental retardation, we have undertaken a…

  5. Dendritic cells induce Tc1 cell differentiation via the CD40/CD40L pathway in mice after exposure to cigarette smoke.

    Science.gov (United States)

    Kuang, Liang-Jian; Deng, Ting-Ting; Wang, Qin; Qiu, Shi-Lin; Liang, Yi; He, Zhi-Yi; Zhang, Jian-Quan; Bai, Jing; Li, Mei-Hua; Deng, Jing-Min; Liu, Guang-Nan; Liu, Ji-Feng; Zhong, Xiao-Ning

    2016-09-01

    Dendritic cells and CD8(+) T cells participate in the pathology of chronic obstructive pulmonary disease, including emphysema, but little is known of the involvement of the CD40/CD40L pathway. We investigated the role of the CD40/CD40L pathway in Tc1 cell differentiation induced by dendritic cells in a mouse model of emphysema, and in vitro. C57BL/6J wild-type and CD40(-/-) mice were exposed to cigarette smoke (CS) or not (control), for 24 wk. In vitro experiments involved wild-type and CD40(-/-) dendritic cells treated with CS extract (CSE) or not. Compared with the control groups, the CS mice (both wild type and CD40(-/-)) had a greater percentage of lung dendritic cells and higher levels of major histocompatability complex (MHC) class I molecules and costimulatory molecules CD40 and CD80. Relative to the CS CD40(-/-) mice, the CS wild type showed greater signs of lung damage and Tc1 cell differentiation. In vitro, the CSE-treated wild-type cells evidenced more cytokine release (IL-12/p70) and Tc1 cell differentiation than did the CSE-treated CD40(-/-) cells. Exposure to cigarette smoke increases the percentage of lung dendritic cells and promotes Tc1 cell differentiation via the CD40/CD40L pathway. Blocking the CD40/CD40L pathway may suppress development of emphysema in mice exposed to cigarette smoke.

  6. Biodegradation of p-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp.

    Energy Technology Data Exchange (ETDEWEB)

    Jain, R.K.; Spain, J.C. [Armstrong Lab., Tyndall Air Force Base, FL (United States); Dreisbach, J.H. [Univ. of Scranton, PA (United States)

    1994-08-01

    The degradation of p-nitrophenol (PNP) by Moraxella and Pseudomonas spp. involves an initial monooxygenase-catalyzed removal of the nitro group. The resultant hydroquinone is subject to ring fission catalyzed by a dioxygenase enzyme. A strain of an Arthrobacter sp. JS443, capable of degrading PNP with stoichiometric release of nitrite has been isolated. During induction of the enzymes required for growth on PNP, 1,2,4-benzenetriol was identified as an intermediate by gas chromatography-mass spectroscopy and radiotracer studies. 1,2,4-Benzenetriol was converted to maleylacetic acid, which was further degraded by the beta-ketoadipate pathway. Conversion of PNP to 1,2,4-benzenetriol is catalyzed by a monooxygenase system in strain JS443 through the formation of 4-nitrocatechol, 4-nitroresorcinol, or both. Results clearly indicate the existence of an alternative pathway for the biodegradation of PNP. 15 refs, 2 figs., 2 tabs.

  7. Persistence of Th1/Tc1 responses one year after tetravalent dengue vaccination in adults and adolescents in Singapore.

    Science.gov (United States)

    Harenberg, Anke; Begue, Sarah; Mamessier, Audrey; Gimenez-Fourage, Sophie; Ching Seah, Ching; Wei Liang, Ai; Li Ng, Jun; Yun Toh, Xue; Archuleta, Sophia; Wilder-Smith, Annelies; Shek, Lynette P; Wartel-Tram, Anh; Bouckenooghe, Alain; Lang, Jean; Crevat, Denis; Caillet, Catherine; Guy, Bruno

    2013-11-01

    To characterize the cell mediated immunity (CMI) induced by the investigational CYD tetravalent dengue vaccine (TDV), we developed a whole-blood, intracellular cytokine staining (ICS) assay and a multiplex assay, each requiring 3 mL of blood. We assessed CMI before and 28 d after a first and third injection of CYD-TDV and one year after the third injection in a subset of 80 adolescents and adults enrolled in a phase II trial in Singapore (ClinicalTrial.gov NCT NCT00880893). CD4/IFNγ/TNFα responses specific to dengue NS3 were detected before vaccination. Vaccination induced YF-17D-NS3-specific CD8/IFNγ responses, without significant TNFα, and a CYD-specific Th1/Tc1 cellular response in all participants, which was characterized by predominant IFNγ secretion compared with TNFα, associated with low level IL-13 secretion in multiplex analysis of peripheral blood mononuclear cells (PBMC) supernatants after restimulation with each the CYD vaccine viruses. Responses were directed mainly against CYD-4 after the first vaccination, and were more balanced against all four serotypes after the third vaccination. The same qualitative profile was observed one year after the third vaccination, with approximately 2-fold lower NS3-specific responses, and 3-fold lower serotype-specific cellular responses. These findings confirm previous observations regarding both the nature and specificity of cellular responses induced by CYD-TDV, and for the first time demonstrate the persistence of cellular responses after one year. We also established the feasibility of analyzing CMI with small blood samples, allowing such analysis to be considered for pediatric trials.

  8. Effects of two kinds of imidazolium-based ionic liquids on the characteristics of steroid-transformation Arthrobacter simplex

    OpenAIRE

    Shen, Yanbing; Wang, Lifang; Liang, Jingting; Rui TANG; WANG, Min

    2016-01-01

    Background Ionic liquids (ILs) are a promising alternative for organic solvents because these liquids exhibit unique properties and enhanced steroid 1-dehydrogenation biotransformation caused by Arthrobacter simplex CPCC 140451 (ASP). However, the effect of ILs on the whole cell itself remains poorly understood and must be further investigated. Results A comparative investigation was performed to determine the effect of imidazolium-based ILs, namely, hydrophobic [PrMIm]PF6, and hydrophilic [P...

  9. Structural model of the voltage-gated potassium channel Kv1.1 and molecular docking of Tc1 toxin from Tityus cambridgei to KcsA and Kv1.1

    Science.gov (United States)

    Liu, Hsuan-Liang; Lin, Jin-Chung

    2003-11-01

    In this study, structural model of the pore loop region of the voltage-gated potassium channel Kv1.1 was constructed based on the crystallographic structure of KcsA. Subsequently, molecular docking experiments of Tc1 towards KcsA as well as Kv1.1 were performed. Tc1 forms the most stable complexes with these two channels when the side chain of K14 occupies the first K + binding site. Tc1 binds preferentially towards Kv1.1 than KcsA due to the stronger electrostatic and hydrophobic interactions. Furthermore, surface complementarity of the outer vestibules of the channel to the Tc1 spatial conformations also plays an important role in stabilizing these Tc1/channel complexes.

  10. Massively parallel sequencing reveals the complex structure of an irradiated human chromosome on a mouse background in the Tc1 model of Down syndrome.

    Directory of Open Access Journals (Sweden)

    Susan M Gribble

    Full Text Available Down syndrome (DS is caused by trisomy of chromosome 21 (Hsa21 and presents a complex phenotype that arises from abnormal dosage of genes on this chromosome. However, the individual dosage-sensitive genes underlying each phenotype remain largely unknown. To help dissect genotype--phenotype correlations in this complex syndrome, the first fully transchromosomic mouse model, the Tc1 mouse, which carries a copy of human chromosome 21 was produced in 2005. The Tc1 strain is trisomic for the majority of genes that cause phenotypes associated with DS, and this freely available mouse strain has become used widely to study DS, the effects of gene dosage abnormalities, and the effect on the basic biology of cells when a mouse carries a freely segregating human chromosome. Tc1 mice were created by a process that included irradiation microcell-mediated chromosome transfer of Hsa21 into recipient mouse embryonic stem cells. Here, the combination of next generation sequencing, array-CGH and fluorescence in situ hybridization technologies has enabled us to identify unsuspected rearrangements of Hsa21 in this mouse model; revealing one deletion, six duplications and more than 25 de novo structural rearrangements. Our study is not only essential for informing functional studies of the Tc1 mouse but also (1 presents for the first time a detailed sequence analysis of the effects of gamma radiation on an entire human chromosome, which gives some mechanistic insight into the effects of radiation damage on DNA, and (2 overcomes specific technical difficulties of assaying a human chromosome on a mouse background where highly conserved sequences may confound the analysis. Sequence data generated in this study is deposited in the ENA database, Study Accession number: ERP000439.

  11. Role of CD8 Regulatory T Cells versus Tc1 and Tc17 Cells in the Development of Human Graft-versus-Host Disease

    Science.gov (United States)

    Gutiérrez-Hoya, Adriana; López-Santiago, Rubén; Vela-Ojeda, Jorge; Montiel-Cervantes, Laura; Rodríguez-Cortés, Octavio; Rosales-García, Víctor; Flores-Mejía, Raúl; Sandoval-Borrego, Daniela

    2017-01-01

    CD8+ T cells that secrete proinflammatory cytokines play a central role in exacerbation of inflammation; however, a new subpopulation of CD8 regulatory T cells has recently been characterized. This study analyzes the prominent role of these different subpopulations in the development of graft-versus-host disease (GVHD). Samples from 8 healthy donors mobilized with Filgrastim® (G-CSF) and 18 patients who underwent allogeneic hematopoietic stem cell transplantation (HSCT) were evaluated by flow cytometry. Mobilization induced an increase in Tc1 (p < 0.01), Th1 (p < 0.001), Tc17 (p < 0.05), and CD8+IL-10+ cells (p < 0.05), showing that G-CSF induces both pro- and anti-inflammatory profiles. Donor-patient correlation revealed a trend (p = 0.06) toward the development of GVHD in patients who receive a high percentage of Tc1 cells. Patients with acute GVHD (aGVHD), either active or controlled, and patients without GVHD were evaluated; patients with active aGVHD had a higher percentage of Tc1 (p < 0.01) and Tc17 (p < 0.05) cells, as opposed to patients without GVHD in whom a higher percentage of CD8 Treg cells (p < 0.01) was found. These findings indicate that the increase in Tc1 and Tc17 cells is associated with GVHD development, while regulatory CD8 T cells might have a protective role in this disease. These tests can be used to monitor and control GVHD. PMID:28164135

  12. Role of CD8 Regulatory T Cells versus Tc1 and Tc17 Cells in the Development of Human Graft-versus-Host Disease

    Directory of Open Access Journals (Sweden)

    Adriana Gutiérrez-Hoya

    2017-01-01

    Full Text Available CD8+ T cells that secrete proinflammatory cytokines play a central role in exacerbation of inflammation; however, a new subpopulation of CD8 regulatory T cells has recently been characterized. This study analyzes the prominent role of these different subpopulations in the development of graft-versus-host disease (GVHD. Samples from 8 healthy donors mobilized with Filgrastim® (G-CSF and 18 patients who underwent allogeneic hematopoietic stem cell transplantation (HSCT were evaluated by flow cytometry. Mobilization induced an increase in Tc1 (p<0.01, Th1 (p<0.001, Tc17 (p<0.05, and CD8+IL-10+ cells (p<0.05, showing that G-CSF induces both pro- and anti-inflammatory profiles. Donor-patient correlation revealed a trend (p=0.06 toward the development of GVHD in patients who receive a high percentage of Tc1 cells. Patients with acute GVHD (aGVHD, either active or controlled, and patients without GVHD were evaluated; patients with active aGVHD had a higher percentage of Tc1 (p<0.01 and Tc17 (p<0.05 cells, as opposed to patients without GVHD in whom a higher percentage of CD8 Treg cells (p<0.01 was found. These findings indicate that the increase in Tc1 and Tc17 cells is associated with GVHD development, while regulatory CD8 T cells might have a protective role in this disease. These tests can be used to monitor and control GVHD.

  13. Alterations to dendritic spine morphology, but not dendrite patterning, of cortical projection neurons in Tc1 and Ts1Rhr mouse models of Down syndrome.

    Directory of Open Access Journals (Sweden)

    Matilda A Haas

    Full Text Available Down Syndrome (DS is a highly prevalent developmental disorder, affecting 1/700 births. Intellectual disability, which affects learning and memory, is present in all cases and is reflected by below average IQ. We sought to determine whether defective morphology and connectivity in neurons of the cerebral cortex may underlie the cognitive deficits that have been described in two mouse models of DS, the Tc1 and Ts1Rhr mouse lines. We utilised in utero electroporation to label a cohort of future upper layer projection neurons in the cerebral cortex of developing mouse embryos with GFP, and then examined neuronal positioning and morphology in early adulthood, which revealed no alterations in cortical layer position or morphology in either Tc1 or Ts1Rhr mouse cortex. The number of dendrites, as well as dendrite length and branching was normal in both DS models, compared with wildtype controls. The sites of projection neuron synaptic inputs, dendritic spines, were analysed in Tc1 and Ts1Rhr cortex at three weeks and three months after birth, and significant changes in spine morphology were observed in both mouse lines. Ts1Rhr mice had significantly fewer thin spines at three weeks of age. At three months of age Tc1 mice had significantly fewer mushroom spines--the morphology associated with established synaptic inputs and learning and memory. The decrease in mushroom spines was accompanied by a significant increase in the number of stubby spines. This data suggests that dendritic spine abnormalities may be a more important contributor to cognitive deficits in DS models, rather than overall neuronal architecture defects.

  14. A method for the production of D-tagatose using a recombinant Pichia pastoris strain secreting β-D-galactosidase from Arthrobacter chlorophenolicus and a recombinant L-arabinose isomerase from Arthrobacter sp. 22c

    Directory of Open Access Journals (Sweden)

    Wanarska Marta

    2012-08-01

    Full Text Available Abstract Background D-Tagatose is a natural monosaccharide which can be used as a low-calorie sugar substitute in food, beverages and pharmaceutical products. It is also currently being tested as an anti-diabetic and obesity control drug. D-Tagatose is a rare sugar, but it can be manufactured by the chemical or enzymatic isomerization of D-galactose obtained by a β-D-galactosidase-catalyzed hydrolysis of milk sugar lactose and the separation of D-glucose and D-galactose. L-Arabinose isomerases catalyze in vitro the conversion of D-galactose to D-tagatose and are the most promising enzymes for the large-scale production of D-tagatose. Results In this study, the araA gene from psychrotolerant Antarctic bacterium Arthrobacter sp. 22c was isolated, cloned and expressed in Escherichia coli. The active form of recombinant Arthrobacter sp. 22c L-arabinose isomerase consists of six subunits with a combined molecular weight of approximately 335 kDa. The maximum activity of this enzyme towards D-galactose was determined as occurring at 52°C; however, it exhibited over 60% of maximum activity at 30°C. The recombinant Arthrobacter sp. 22c L-arabinose isomerase was optimally active at a broad pH range of 5 to 9. This enzyme is not dependent on divalent metal ions, since it was only marginally activated by Mg2+, Mn2+ or Ca2+ and slightly inhibited by Co2+ or Ni2+. The bioconversion yield of D-galactose to D-tagatose by the purified L-arabinose isomerase reached 30% after 36 h at 50°C. In this study, a recombinant Pichia pastoris yeast strain secreting β-D-galactosidase Arthrobacter chlorophenolicus was also constructed. During cultivation of this strain in a whey permeate, lactose was hydrolyzed and D-glucose was metabolized, whereas D-galactose was accumulated in the medium. Moreover, cultivation of the P. pastoris strain secreting β-D-galactosidase in a whey permeate supplemented with Arthrobacter sp. 22c L-arabinose isomerase resulted in a 90% yield

  15. Combined bioremediation of atrazine-contaminated soil by Pennisetum and Arthrobacter sp. strain DNS10.

    Science.gov (United States)

    Zhang, Ying; Ge, Shijie; Jiang, Mingyue; Jiang, Zhao; Wang, Zhigang; Ma, Bingbing

    2014-05-01

    Strain DNS10 was isolated from the black soil collected from the northeast of China which had been cultivated with atrazine as the sole nitrogen source. Pennisetum is a common plant in Heilongjiang Province of China. The main objective of this paper was to evaluate the efficiency of plant-microbe joint interactions (Arthrobacter sp. DNS10 + Pennisetum) in atrazine degradation compared with single-strain and single-plant effects. Plant-microbe joint interactions degraded 98.10 % of the atrazine, while single strain and single plant only degraded 87.38 and 66.71 % after a 30-day experimental period, respectively. The results indicated that plant-microbe joint interactions had a better degradation effect. Meanwhile, we found that plant-microbe joint interactions showed a higher microbial diversity. The results of microbial diversity illustrated that the positive effects of cropping could improve soil microbial growth and activity. In addition, we planted atrazine-sensitive plants (soybean) in the soil after repair. The results showed that soybean growth in soil previously treated with the plant-microbe joint interactions treatment was better compared with other treatments after 20 days of growth. This was further proved that the soil is more conducive for crop cultivation. Hence, plant-microbe joint interactions are considered to be a potential tool in the remediation of atrazine-contaminated soil.

  16. Adenylate nucleotide levels and energy charge in Arthrobacter crystallopoietes during growth and starvation.

    Science.gov (United States)

    Leps, W T; Ensign, J C

    1979-07-01

    The adenylate nucleotide concentrations, based on internal water space, were determined in cells of Arthrobacter crystallopoietes during growth and starvation and the energy charge of the cells was calculated. The energy charge of spherical cells rose during the first 10 h of growth, then remained nearly constant for as long as 20 h into the stationary phase. The energy charge of rod-shaped cells rose during the first 4 h of growth, then remained constant during subsequent growth and decreased in the stationary growth phase. Both spherical and rod-shaped cells excreted adenosine monophosphate but not adenosine triphosphate or adenosine diphosphate during starvation. The intracellular energy charge of spherical cells declined during the initial 10 h and then remained constant for 1 week of starvation at a value of 0.78. The intracellular energy charge of rod-shaped cells declined during the first 24 h of starvation, remained constant for the next 80 h, then decreased to a value of 0.73 after a total of 168 h starvation. Both cell forms remained more than 90% viable during this time. Addition of a carbon and energy source to starving cells resulted in an increase in the ATP concentration and as a result the energy charge increased to the smae levels as found during growth.

  17. Biodegradation of Benzo[a]pyrene by Arthrobacter oxydans B4

    Institute of Scientific and Technical Information of China (English)

    PENG Hui; YIN Hua; DENG Jun; YE Jin-Shao; CHEN Shuo-Na; HE Bao-Yan; ZHANG Na

    2012-01-01

    A bacterial strain,Arthrobacter oxydans (B4),capable of degrading benzo[a]pyrene (BaP) in water body,was isolated from a polycyclic aromatic hydrocarbons-contaminated site.Effects of different factors,such as reaction time,pH value,temperature and organic nutrients,on BaP biodegradation by the strain B4 were studied.After 5 d treatment,the concentration of BaP in mineral salts medium was reduced to 0.318 mg L-1,compared to the initial concentration of 1.000 mg L-1.There was a process of acid formation during the degradation with pH failing from initial 7.01 to 4.61 at 5 d,so keeping the water body under slightly alkaline condition was propitious to BaP degradation.Strain B4 efficiently degraded BaP at 20 to 37 ℃ with addition of organic nutrients.The biodegradation and transformation of BaP mainly occurred on cell surfaces,and extracellular secretions played an important role in these processes.Fourier transform infrared spectroscopy and gas chromatograph-mass spectrometer analyses of metabolites showed that ring cleavage occurred in the BaP degradation process and the resulting metabolically utilizable substrates were generated as sole carbon sources for B4 growth.Furthermore,mineralization extent of metabolites was verified by determining the total organic carbon and inorganic carbon in the degradation system.

  18. Plasmid-encoded degradation of p-nitrophenol and 4-nitrocatechol by Arthrobacter protophormiae.

    Science.gov (United States)

    Chauhan, A; Chakraborti, A K; Jain, R K

    2000-04-21

    Arthrobacter protophormiae strain RKJ100 is capable of utilizing p-nitrophenol (PNP) as well as 4-nitrocatechol (NC) as the sole source of carbon, nitrogen and energy. The degradation of PNP and NC by this microorganism takes place through an oxidative route, as stoichiometry of nitrite molecules was observed when the strain was grown on PNP or NC as sole carbon and energy sources. The degradative pathways of PNP and NC were elucidated on the basis of enzyme assays and chemical characterization of the intermediates by TLC, GC, (1)H NMR, GC-MS, UV spectroscopy, and HPLC analyses. Our studies clearly indicate that the degradation of PNP proceeds with the formation of p-benzoquinone (BQ) and hydroquinone (HQ) and is further degraded via the beta-ketoadipate pathway. Degradation of NC involved initial oxidation to generate 1,2,4-benzenetriol (BT) and 2-hydroxy-1,4-benzoquinone; the latter intermediate is then reductively dehydroxylated, forming BQ and HQ, and is further cleaved via beta-ketoadipate to TCA intermediates. It is likely, therefore, that the same set of genes encode the further metabolism of HQ in PNP and NC degradation. A plasmid of approximately 65 kb was found to be responsible for harboring genes for PNP and NC degradation in this strain. This was based on the fact that PNP(-) NC(-) derivatives were devoid of the plasmid and had simultaneously lost their capability to grow at the expense of these nitroaromatic compounds.

  19. Biodegradation kinetics of 4-fluorocinnamic acid by a consortium of Arthrobacter and Ralstonia strains.

    Science.gov (United States)

    Hasan, Syed A; Wietzes, Piet; Janssen, Dick B

    2012-02-01

    Arthrobacter sp. strain G1 is able to grow on 4-fluorocinnamic acid (4-FCA) as sole carbon source. The organism converts 4-FCA into 4-fluorobenzoic acid (4-FBA) and utilizes the two-carbon side-chain for growth with some formation of 4-fluoroacetophenone as a dead-end side product. We also have isolated Ralstonia sp. strain H1, an organism that degrades 4-FBA. A consortium of strains G1 and H1 degraded 4-FCA with Monod kinetics during growth in batch and continuous cultures. Specific growth rates of strain G1 and specific degradation rates of 4-FCA were observed to follow substrate inhibition kinetics, which could be modeled using the kinetic models of Haldane-Andrew and Luong-Levenspiel. The mixed culture showed complete mineralization of 4-FCA with quantitative release of fluoride, both in batch and continuous cultures. Steady-state chemostat cultures that were exposed to shock loadings of substrate responded with rapid degradation and returned to steady-state in 10-15 h, indicating that the mixed culture provided a robust system for continuous 4-FCA degradation.

  20. Characterization and flocculation mechanism of an alkali-activated polysaccharide flocculant from Arthrobacter sp. B4.

    Science.gov (United States)

    Li, Yumei; Li, Qiang; Hao, Dakui; Hu, Zhiheng; Song, Dongxue; Yang, Min

    2014-10-01

    The characterization and flocculation mechanism of a bioflocculant produced by Arthrobacter sp. B4 were investigated. The bioflocculant's active ingredient was a polysaccharide (B4-PS) that consisted of three main fractions corresponding to the molecular weights of approximately 3.97×10(4)Da, 6.84×10(3)Da and 5.9×10(6)Da, respectively. These fractions were composed of galactose, glucose, mannose and glucuronic acid. Flocculation experiments showed that B4-PS could spontaneously flocculate in the presence of Ca(2+) ions at a high pH (>12.0), followed by the pH reduction to ∼6.0. The self-flocculation of B4-PS may be mediated by ionization and charge neutralization mechanism. Furthermore, B4-PS exhibited excellent capabilities for pollutant removal and pH reduction in alkaline wastewater. These data suggest B4-PS may be a promising tool for use in industrial alkaline wastewater pretreatment.

  1. Isolation and characteristics of Arthrobacter sp. strain CW-1 for biodegradation of PAEs

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Isolation of new bacterial strains and recognition of their metabolic activities are highly desirable for sustainability of natural ecosystems. Biodegradation of dimethyl phthalate (DMP) under anoxic conditions has been shown to occur as a series of sequential steps using strain CW-1 isolated from digested sludge of Sibao Wastewater Treatment Plant in Hangzhou, China. The microbial colony on LB medium was yellowish, 3~5 mm in diameter, convex in the center, and embedded in mucous externally.The individual cells of strain CW-1 are irregular rods, measuring (0.6~0.7)×(0.9~1.0) μm, V-shaped, with clubbed ends, Gram positive and without any filaments. 16S rDNA (1438 bp) sequence analysis showed that the strain was related to Arthrobacter sp.CW-1 and can degrade PAEs utilizing nitrate as electron acceptor, but cannot mineralize DMP completely. The degradation pathway was recommended as: dimethyl phthalate (DMP)→monomethyl phthalate (MMP)→phthalic acid (PA). DMP biodegradation was a first order reaction with degradation rate constant of 0.3033 d-1 and half-life 2.25 d. The DMP conversion to PA by CW-1 could be described by using sequential kinetic model.

  2. Biodegradation of nitroglycerin in porous media and potential for bioaugmentation with Arthrobacter sp. strain JBH1.

    Science.gov (United States)

    Husserl, Johana; Hughes, Joseph B

    2013-07-01

    Nitroglycerin (NG) is a toxic explosive found as a contaminant of soil and groundwater. Several microbial strains are capable of partially reducing the NG molecule to dinitro or mononitroesters. Recently, a strain capable of growing on NG as the sole source of carbon and nitrogen (Arthrobacter sp. strain JBH1) was isolated from contaminated soil. Despite the widespread presence of microbial strains capable of transforming NG in contaminated soils and sediments, the extent of NG biodegradation at contaminated sites is still unknown. In this study column experiments were conducted to investigate the extent of microbial degradation of NG in saturated porous media, specifically after bioaugmentation with JBH1. Initial experiments using sterile, low sorptivity sand, showed mineralization of NG after bioaugmentation with JBH1 in the absence of sources of carbon and nitrogen other than NG. Results could be modeled using a first order degradation rate of 0.14d(-1). Further experiments conducted using contaminated soil with high organic carbon content (highly sorptive) resulted in column effluents that did not contain NG although high dinitroester concentrations were observed. Bioaugmentation with JBH1 in sediments containing strains capable of partial transformation of NG resulted in complete mineralization of NG and faster degradation rates.

  3. Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 β-fructofuranosidase.

    Science.gov (United States)

    Tonozuka, Takashi; Tamaki, Akiko; Yokoi, Gaku; Miyazaki, Takatsugu; Ichikawa, Megumi; Nishikawa, Atsushi; Ohta, Yukari; Hidaka, Yuko; Katayama, Kinya; Hatada, Yuji; Ito, Tetsuya; Fujita, Koki

    2012-12-10

    Arthrobacter sp. K-1 β-fructofuranosidase (ArFFase), a glycoside hydrolase family 68 enzyme, catalyzes the hydrolysis and transfructosylation of sucrose. ArFFase is useful for producing a sweetener, lactosucrose (4(G)-β-D-galactosylsucrose). The primary structure of ArFFase is homologous to those of levansucrases, although ArFFase catalyzes mostly hydrolysis when incubated with sucrose alone, even at high concentration. Here, we determined the crystal structure of ArFFase in unliganded form and complexed with fructose. ArFFase consisted of a five-bladed β-propeller fold as observed in levansucrases. The structure of ArFFase was most similar to that of Gluconacetobacter diazotrophicus levansucrase (GdLev). The structure of the catalytic cleft of ArFFase was also highly homologous to that of GdLev. However, two amino acid residues, Tyr232 and Pro442 in ArFFase, were not conserved between them. A tunnel observed at the bottom of the catalytic cleft of ArFFase may serve as a water drain or its reservoir.

  4. The Arthrobacter species FB24 Arth_1007 (DnaB intein is a pseudogene.

    Directory of Open Access Journals (Sweden)

    Kazuo Tori

    Full Text Available An Arthrobacter species FB24 gene (locus tag Arth_1007 was previously annotated as a putative intein-containing DnaB helicase of phage origin (Arsp-FB24 DnaB intein. However, it is not a helicase gene because the sequence similarity is limited to inteins. In fact, the flanking exteins total only 66 amino acids. Therefore, the intein should be referred to as the Arsp-FB24 Arth_1007 intein. The Arsp-FB24 Arth_1007 intein failed to splice in its native precursor and in a model precursor. We previously noted that the Arsp-FB24 Arth_1007 intein is the only putative Class 3 intein that is missing the catalytically essential Cys at position 4 of intein Motif F, which is one of the three defining signature residues of this class. Additionally, a catalytically essential His in position 10 of intein Motif B is also absent; this His is the most conserved residue amongst all inteins. Splicing activity was not rescued when these two catalytically important positions were 'reverted' back to their consensus residues. This study restores the unity of the Class 3 intein signature sequence in active inteins by demonstrating that the Arsp-FB24 Arth_1007 intein is an inactive pseudogene.

  5. Mineralization of melamine and cyanuric acid as sole nitrogen source by newly isolated Arthrobacter spp. using a soil-charcoal perfusion method.

    Science.gov (United States)

    Hatakeyama, Takashi; Takagi, Kazuhiro; Yamazaki, Kenichi; Sakakibara, Futa; Ito, Koji; Takasu, Eiichi; Naokawa, Takuji; Fujii, Kunihiko

    2015-05-01

    Melamine belongs to the s-triazine family, and industrially used as raw product in many ways all over the world. Melamine has been reported for human harmful effects and detected from some crops, soil and water. To remove melamine from the polluted environment, the efficient melamine-mineralizing microorganisms have been needed. We newly isolated three melamine-degrading bacteria from the same upland soil sample using soil-charcoal perfusion method. These bacteria were classified as Arthrobacter sp. MCO, Arthrobacter sp. CSP and Microbacterium sp. ZEL by 16S rRNA genes sequencing analysis. Both Arthrobacter species completely degraded melamine within 2 days, and consumed melamine as a sole nitrogen source. Both strains also grew in cyanuric acid as sole nitrogen source, and released small quantities of ammonium ions. These strains are the first identified bacteria that can mineralize both melamine and cyanuric acid as sole initial nitrogen source in Arthrobacter sp. Although ammeline and ammelide intermediates were detected, these strains possess none of the known genes encoding melamine degrading enzymes. Since the Arthrobacter strains also degraded melamine in a high pH liquid medium, they present as potential bioremediation agents in melamine-polluted environments.

  6. Degradation of o-methoxybenzoate by a two-member consortium made up of a gram-positive Arthrobacter strain and a gram-negative Pantotea strain.

    Science.gov (United States)

    Gil, M; Haïdour, A; Ramos, J L

    2000-01-01

    Aromatic carboxylic acids substituted with methoxylated groups are among the most abundant products in "alpechin", the wastes resulting from pressing olives to obtain olive oil. Degradation of o-methoxybenzoate by an stable consortium made of a gram positive bacterium, Arthrobacter oxydans, and gram negative one, Pantotea agglomerans, was shown to mineralize this compound efficiently. The concerted action of both microorganisms was needed for the two first steps in the process, namely, the conversion of o-methoxybenzoate into salycilate, and the hydroxylation of the latter to gentisate. Gentisate was further degraded by the Arthrobacter strain.

  7. Elevated interleukin-27 enhances the polarization of Th1/Tc1 cells and the production of proinflammatory cytokines in primary immune thrombocytopenia.

    Science.gov (United States)

    Li, Hui Yuan; Zhang, Dong Lei; Ge, Jing; Zhou, Hu; Qi, Ai ping; Ma, Li; Xue, Feng; Zhou, Ze Ping; Yang, Ren Chi

    2012-03-01

    Primary immune thrombocytopenia (ITP) is an acquired, organ-specific, autoimmune disease with many immune dysfunctions. Interleukin-27 (IL-27) can regulate T cell differentiation. However, it is unclear whether IL-27 correlates with the dysfunctions of T cell differentiation in ITP patients. Thus, to determine the roles of IL-27 in ITP, we studied the expression of IL-27/IL-27 receptor in ITP patients. The results indicated that the levels of IL-27 in the plasma of untreated active ITP patients were higher than in normal controls. We next evaluated the contribution of IL-27 to T cell differentiation. Our results indicated that IL-27 increased T-bet expression, inhibited GATA-3 and ROR-γt expression, and promoted the secretion of tumor necrosis factor-α, interferon-γ, and granzyme B of peripheral blood mononuclear cells from ITP patients. Also, we confirmed that IL-27 induced the differentiation of T helper (Th)-1 and Tc1 cells. In conclusion, IL-27 might play an important role in the pathogenesis of ITP by inducing the polarization of Th1/Tc1 cells and the production of proinflammatory cytokines.

  8. Radial variation of whistler-mode chorus: first results from the STAFF/DWP instrument on board the Double Star TC-1 spacecraft

    Directory of Open Access Journals (Sweden)

    O. Santolík

    2005-11-01

    Full Text Available We use the first measurements of the STAFF/DWP instrument on the Double Star TC-1 spacecraft to investigate whistler-mode chorus. We present initial results of a systematic study on radial variation of dawn chorus. The chorus events show an increased intensity at L parameter above 6. This is important for the possible explanation of intensifications of chorus, which were previously observed closer to the Earth at higher latitudes. Our results also indicate that the upper band of chorus at frequencies above one-half of the electron cyclotron frequency disappears for L above 8. The lower band of chorus is observed at frequencies below 0.4 of the electron cyclotron frequency up to L of 11-12. The maxima of the chorus power spectra are found at slightly lower frequencies compared to previous studies. We do not observe any distinct evolution of the position of the chorus frequency band as a function of L. More data of the TC-1 spacecraft are needed to verify these initial results and to increase the MLT coverage.

  9. Biodegradation of 2-methyl, 2-ethyl, and 2-hydroxypyridine by an Arthrobacter sp. isolated from subsurface sediment.

    Science.gov (United States)

    O'Loughlin, E J; Sims, G K; Traina, S J

    1999-04-01

    A bacterium capable of degrading 2-methylpyridine was isolated by enrichment techniques from subsurface sediments collected from an aquifer located at an industrial site that had been contaminated with pyridine and pyridine derivatives. The isolate, identified as an Arthrobacter sp., was capable of utilizing 2-methylpyridine, 2-ethylpyridine, and 2-hydroxypyridine as primary C, N, and energy sources. The isolate was also able to utilize 2-, 3-, and 4-hydroxybenzoate, gentisic acid, protocatechuic acid and catechol, suggesting that it possesses a number of enzymatic pathways for the degradation of aromatic compounds. Degradation of 2-methylpyridine, 2-ethylpyridine, and 2-hydroxypyridine was accompanied by growth of the isolate and release of ammonium into the medium. Degradation of 2-methylpyridine was accompanied by overproduction of riboflavin. A soluble blue pigment was produced by the isolate during the degradation of 2-hydroxypyridine, and may be related to the diazadiphenoquinones reportedly produced by other Arthrobacter spp. when grown on 2-hydroxypyridine. When provided with 2-methylpyridine, 2-ethylpyridine, and 2-hydroxypyridine simultaneously, 2-hydroxypyridine was rapidly and preferentially degraded; however there was no apparent biodegradation of either 2-methylpyridine or 2-ethylpyridine until after a seven day lag. The data suggest that there are differences between the pathway for 2-hydroxypyridine degradation and the pathways(s) for 2-methylpyridine and 2-ethylpyridine.

  10. Characterization of a novel phenol hydroxylase in indoles biotransformation from a strain Arthrobacter sp. W1 [corrected].

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    Yuanyuan Qu

    Full Text Available BACKGROUND: Indigoids, as popular dyes, can be produced by microbial strains or enzymes catalysis. However, the new valuable products with their transformation mechanisms, especially inter-conversion among the intermediates and products have not been clearly identified yet. Therefore, it is necessary to investigate novel microbial catalytic processes for indigoids production systematically. FINDINGS: A phenol hydroxylase gene cluster (4,606 bp from Arthrobacter sp. W1 (PH(w1 was obtained. This cluster contains six components in the order of KLMNOP, which exhibit relatively low sequence identities (37-72% with known genes. It was suggested that indole and all the tested indole derivatives except for 3-methylindole were transformed to various substituted indigoid pigments, and the predominant color products derived from indoles were identified by spectrum analysis. One new purple product from indole, 2-(7-oxo-1H-indol-6(7H-ylidene indolin-3-one, should be proposed as the dimerization of isatin and 7-hydroxylindole at the C-2 and C-6 positions. Tunnel entrance and docking studies were used to predict the important amino acids for indoles biotransformation, which were further proved by site-directed mutagenesis. CONCLUSIONS/SIGNIFICANCE: We showed that the phenol hydroxylase from genus Arthrobacter could transform indoles to indigoids with new chemical compounds being produced. Our work should show high insights into understanding the mechanism of indigoids bio-production.

  11. Biofiltration of trimethylamine, dimethylamine, and methylamine by immobilized Paracoccus sp. CP2 and Arthrobacter sp. CP1.

    Science.gov (United States)

    Ho, Kuo-Ling; Chung, Ying-Chien; Lin, Yueh-Hsien; Tseng, Ching-Ping

    2008-05-01

    A biofilter using granular activated carbon with immobilized Paracoccus sp. CP2 was applied to the elimination of 10-250 ppm of trimethylamine (TMA), dimethylamine (DMA), and methylamine (MA). The results indicated that the system effectively treated MA (>93%), DMA (>90%), and TMA (>85%) under high loading conditions, and the maximum degradation rates were 1.4, 1.2, and 0.9g-Nkg(-1) GAC d(-1). Among the three different amines treated, TMA was the most difficult to degrade and resulted in ammonia accumulation. Further study on TMA removal showed that the optimal pH was near neutral (6.0-8.0). The supply of high glucose (>0.1%) inhibited TMA removal, maybe due to substrate competition. However, complete TMA degradation was achieved under the co-immobilization of Paracoccus sp. CP2 and Arthrobacter sp. CP1 ( approximately 96%). Metabolite analysis results demonstrated that the metabolite NH(4)(+) concentrations decreased by a relatively small 27% while the metabolite NO(2)(-) apparently increased by heterotrophic nitrification of Arthrobacter sp. CP1 in the co-immobilization biofilter.

  12. Optimization of Endoglucanase Production from a Novel Bacterial Isolate, Arthrobacter sp. HPG166 and Characterization of Its Properties

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    Shengwei Huang

    2015-10-01

    Full Text Available ABSTRACTIn this study, a potential novel cellulolytic bacteriumArthrobacter sp. HPG166 was isolated from the hindgut of root-feeding larvaeHolotrichia parallela. Optimization of fermentation factors for endoglucanase production byArthrobacter sp. HPG166 was carried out via response surface methodology. Sodium carboxymethylcellulose 1.19% (w/v and beef extract 0.35% (w/v were the ideal combination of carbon and nitrogen sources for enzyme production; the optimum temperature and pH for cellulase production were 34°C and pH 8.0 respectively. Under the optimized fermentation conditions, the maximum endoglucanase activity of 1.411 U mL-1 was obtained. The crude endoglucanase was thermotolerant as it retained 50.31% of its activity after incubation at 70°C for an hour. Metal profile of the enzyme indicated that Mg2+ and Na+ were strong stimulators while Mn2+ and Co+ drastically inhibited its activity. Due to its particular characteristics, this enzyme could have potential for industrial applications.

  13. Optimization of four types of antimicrobial agents to increase the inhibitory ability of marine Arthrobacter oxydans KQ11 dextranase mouthwash

    Science.gov (United States)

    Ren, Wei; Wang, Shujun; Lü, Mingsheng; Wang, Xiaobei; Fang, Yaowei; Jiao, Yuliang; Hu, Jianen

    2016-03-01

    We adopted the response surface methodology using single factor and orthogonal experiments to optimize four types of antimicrobial agents that could inhibit biofilm formation by Streptococcus mutans, which is commonly found in the human oral cavity and causes tooth decay. The objective was to improve the function of marine Arthrobacter oxydans KQ11 dextranase mouthwash (designed and developed by our laboratory). The experiment was conducted in a three-level, four-variable central composite design to determine the best combination of ZnSO4, lysozyme, citric acid and chitosan. The optimized antibacterial agents were 2.16 g/L ZnSO4, 14 g/L lysozyme, 4.5 g/L citric acid and 5 g/L chitosan. The biofilm formation inhibition reached 84.49%. In addition, microscopic observation of the biofilm was performed using scanning electron microscopy and confocal laser scanning microscopy. The optimized formula was tested in marine dextranase Arthrobacter oxydans KQ11 mouthwash and enhanced the inhibition of S. mutans. This work may be promoted for the design and development of future marine dextranase oral care products.

  14. Arthrobacter P 1, a Fast Growing Versatile Methylotroph with Amine Oxidase as a Key Enzyme in the Metabolism of Methylated Amines

    NARCIS (Netherlands)

    Dijken, J.P. van; Veenhuis, M.; Harder, W.

    1981-01-01

    A facultative methylotrophic bacterium was isolated from enrichment cultures containing methylamine as the sole carbon source. It was tentatively identified as an Arthrobacter species. Extracts of cells grown on methylamine or ethylamine contained high levels of amine oxidase (E.C. 1.4.3) activity.

  15. pTC-1 observation of ion high-speed flow reversal in the near-Earth plasma sheet during substorm

    Institute of Scientific and Technical Information of China (English)

    H.; RME; I.; DANDOURAS; C.; M.; CARR

    2008-01-01

    Based on measurements of FGM and HIA on board TC-1 at its apogee on Septem-ber 14, 2004, we analyzed the ion high-speed flows in the near-Earth plasma sheet observed during the substorm expansion phase. Strong tailward high-speed flows (Vx ~ -350 km/s) were first seen at about X ~ -13.2 RE in near-Earth magnetotail, one minute later the flows reversed from tailward to earthward. The reversal process occurred quickly after the substorm expansion onset. The near-Earth magnetotail plasma sheet was one of key regions for substorm onset. Our analysis showed that the ion flow reversal from tailward to earthward was likely to be in close relation with the substorm expansion initiation and might play an important role in trigger-ing the substorm expansion onset.

  16. Quasi-continuous reconnection accompanied by FTEs during IMF Bz ≈ 0 nT observed by Double Star TC-1 at the dawnside magnetopause

    Science.gov (United States)

    Yan, Guang Qing; Mozer, Forrest S.; Phan, Tai; Shen, Chao; Chen, Tao; Bogdanova, Yulia V.; Rème, Henri; Carr, Chris; Liu, Zhen Xing

    2016-07-01

    During a one-hour interval of interplanetary magnetic field (IMF) Bz ≈ 0 nT, the equatorial spacecraft Double Star TC-1 encountered the dawn flank magnetopause many times at the magnetic local time (MLT) of about 08:00 and the latitude of about -27°. During each encounter, reconnection jets were observed with their velocities up to more than 500 km/s, significantly higher than the background flow in the magnetosheath. The fast flows match the theoretical prediction of Alfvénic acceleration well. The medium temperature and density of ions in the boundary layer indicate the open magnetic field topology inside this layer. The mainly southward and tailward flows of the plasma jets alongside with the negative slopes of the Walén test indicate that the spacecraft was located south of the reconnection site, consistent with both anti-parallel and component reconnection models. The accelerated flows were observed lasting for about one hour, with some modulations by the oscillations of the magnetopause, but no reversals in the direction of Vz were found during the interval. The significantly enhanced flows in the boundary layer compared to the adjacent magnetosheath indicate that the reconnection was quasi-continuously active at the magnetopause northward of the spacecraft under such IMF conditions. At the same time, the bipolar signatures in BN with enhancements of the magnetic field indicate the occurrence of the Flux Transfer Events (FTEs). The observed reconnection was quasi-continuous, whereas the simultaneously accompanied FTEs were time-dependent under the IMF Bz ≈ 0 nT. For this event, however, it is not possible to identify whether the reconnection was anti-parallel or component because the TC-1 was far away from the reconnection site.

  17. Degradation and induction specificity in actinomycetes that degrade p-nitrophenol.

    OpenAIRE

    1993-01-01

    We have isolated two soil bacteria (identified as Arthrobacter aurescens TW17 and Nocardia sp. strain TW2) capable of degrading p-nitrophenol (PNP) and numerous other phenolic compounds. A. aurescens TW17 contains a large plasmid which correlated with the PNP degradation phenotype. Degradation of PNP by A. aurescens TW17 was induced by preexposure to PNP, 4-nitrocatechol, 3-methyl-4-nitrophenol, or m-nitrophenol, whereas PNP degradation by Nocardia sp. strain TW2 was induced by PNP, 4-nitroca...

  18. Physicochemical factors for affecting the efficiency of Arthrobacter chlorophenolicus MN1409 on manganese oxidation%理化因素对锰细菌Arthrobacter chlorophenolicus MN1409氧化Mn2+的影响

    Institute of Scientific and Technical Information of China (English)

    冯福鑫; 王芳; 许旭萍

    2012-01-01

    Arthrobacter chlorophenolicus MN1409是1株分离自锰矿样品的高效锰氧化细菌.为了建立该菌株氧化Mn2+的适宜条件,研究了接种量、装液量、摇床转速、温度、pH值、Fe2+初始质量浓度和Mn2+初始质量浓度等理化因素对其锰氧化效率的影响.结果表明,接种量、装液量、转速和Mn2+初始质量浓度在一定范围内变化对锰氧化率影响不大;而温度、pH值和Fe2+初始质量浓度变化对锰氧化率有较大影响.当接种量为4%,装液量为60mL,温度为25℃,摇床转速为100r/min,pH值为7,且有一定的Fe2+存在时,Arthrobacter chlorophenolicus MN1409对锰的氧化效率最高.%The physicochemical factors for affecting the manganese oxidation efficiency of an manganese oxidizing bacteria named Arthrobacter chlorophennlicus MN1409 which was isolated from manganese ore sample were studied. The identified factors include inoculum volume, liquid volume, temperature, shaking speed, pH as well as the concentration of Fe2+ and Mn2+ . The results showed that there was no significant effect on the biological manganese oxidation rate and chemical manganese oxidation rate during 2% - 10% inoculum volumes. 4% inoculum volume was the optimum condition according to its highest total manganese oxidation rate. Similarly, biological and chemical manganese oxidation rale have no significant difference for the liquid volume ranging from 50 mL to 100 mL in 250 mL triangular flask , the highest total manganese oxidation rate occurred in 60 mL liquid volume. Nevertheless, temperature showed an positive effect on manganese oxidation rate. By increasing the temperature from 15 ℃ to 35 ℃, highest biological and chemical manganese oxidation rate could be reached at 25 ℃ and 35 ℃ , respectively, plus the total oxidation rate could achieved 81.52% as well in 35 ℃ . In addition, the effect of shaker speed on manganese oxidation efficiency (MOE) showed that the oxidation rates were similar for

  19. Study on Th1/Th2、Tc1/Tc2 Subsets on Peripheral Blood of the Patients with Autoimmune Haemolylic Anaemia and It's Significance%AIHA患者外周血Th1/Th2、Tc1/Tc2亚群的研究及意义

    Institute of Scientific and Technical Information of China (English)

    吴伟全; 孙炎华; 邱少玲

    2006-01-01

    目的:研究自身免疫性溶血性贫血(autoimmune haemolytic anaemia,AIHA)患者外周血Th1/Th2、Tc1/Tc2亚群极化状态,分析AIHA的免疫学发病机制,为AIHA的临床治疗提供新的理论依据.方法:收集AIHA患者及健康对照组外周抗凝静脉血,分离纯化T细胞.以Cy5标记的抗CD4、CD8单抗和PE标记的CD30单抗作双色流式细胞术,分析AIHA患者Th/Tc、Th1/Th2、Tc1/Tc2亚群的比例变化.结果:与正常对照组相比,AIHA患者外周血CD4+细胞百分率显著降低(P《0.05),CD8+细胞百分率无明显变化(P》0.05),CD4+/CD8+比例明显降低(P《0.05),CD4+CD30-T、CD4+CD30+T细胞百分率明显下降,CD4+CD30-T/CD4+CD30+T和CD8+CD30-T/CD8+CD30+T比例均明显升高(P《0.05),而CD8+CD30-T及CD8+CD30+T细胞百分率无明显变化(P》0.05).结论:AIHA患者外周血存在细胞免疫功能失调,T细胞亚群极化状态发生改变,呈明显Th1/Tc1型细胞优势;Th1/Tc1型细胞介导的细胞免疫可能与AIHA的免疫学发病机制有关.

  20. Taxonomic identification, phenanthrene uptake activity, and membrane lipid alterations of the PAH degrading Arthrobacter sp. strain Sphe3

    Energy Technology Data Exchange (ETDEWEB)

    Kallimanis, A.; Drainas, C.; Koukkou, A.I. [Ioannina Univ. (Greece). Sector of Organic Chemistry and Biochemistry; Frillingos, S. [Ioannina Univ. (Greece). Lab. of Biological Chemistry

    2007-09-15

    This report describes phenanthrene uptake as well as the effect of phenanthrene on the membrane phospholipid and fatty acid composition in a newly isolated bacterial strain, Sphe3, that we taxonomically identified as Arthrobacter sp. Strain Sphe3 is able to utilize phenanthrene as a carbon source at high rates and appears to internalize phenanthrene with two mechanisms: a passive diffusion when cells are grown on glucose, and an inducible active transport system when cells are grown on phenanthrene as a sole carbon source. Active transport followed Michaelis-Menten kinetics, and it was amenable to inhibition by 2,4-dinitrophenol and sodium azide. Evidence provided here indicates that apart from inducing an active PAH uptake, the presence of phenanthrene elicits significant changes in membrane fluidity.

  1. Crystallization and X-ray diffraction analysis of nylon hydrolase (NylC) from Arthrobacter sp. KI72.

    Science.gov (United States)

    Nagai, Keisuke; Yasuhira, Kengo; Tanaka, Yusuke; Kato, Dai-ichiro; Takeo, Masahiro; Higuchi, Yoshiki; Negoro, Seiji; Shibata, Naoki

    2013-10-01

    Nylon hydrolase (NylC) encoded by Arthrobacter plasmid pOAD2 (NylCp2) was expressed in Escherichia coli JM109 and purified by ammonium sulfate fractionation, anion-exchange column chromatography and gel-filtration chromatography. NylCp2 was crystallized by the sitting-drop vapour-diffusion method with ammonium sulfate as a precipitant in 0.1 M HEPES buffer pH 7.5 containing 0.2 M NaCl and 25% glycerol. Diffraction data were collected from the native crystal to a resolution of 1.60 Å. The obtained crystal was spindle shaped and belonged to the C-centred orthorhombic space group C2221, with unit-cell parameters a=70.84, b=144.90, c=129.05 Å. A rotation and translation search gave one clear solution containing two molecules per asymmetric unit.

  2. Screening micro-organisms for cadmium absorption from aqueous solution and cadmium absorption properties of Arthrobacter nicotianae.

    Science.gov (United States)

    Tsuruta, Takehiko; Umenai, Daishi; Hatano, Tomonobu; Hirajima, Tsuyoshi; Sasaki, Keiko

    2014-01-01

    To obtain basic information on how microbial cells absorb cadmium from aqueous solution, we examined cadmium absorption in various micro-organisms. Of 51 micro-organism strains tested, we found that some Gram-positive bacteria, such as, Arthrobacter nicotianae and Bacillus subtilis, and some actinomycetes, such as, Streptomyces flavoviridis and S. levoris were highly capable of absorbing cadmium from an aqueous solution. A. nicotianae absorbed the largest amount of cadmium, over 800 μmol cadmium per gram of dry wt. cells. However, cadmium absorption by A. nicotianae was affected by the solution pH, cadmium concentration, and cell density. The absorption of cadmium was very rapid. Some factors that affected cadmium absorption by A. nicotianae cells were also discussed.

  3. Complete genome sequence of Arthrobacter sp. ERGS1:01, a putative novel bacterium with prospective cold active industrial enzymes, isolated from East Rathong glacier in India.

    Science.gov (United States)

    Kumar, Rakshak; Singh, Dharam; Swarnkar, Mohit Kumar; Singh, Anil Kumar; Kumar, Sanjay

    2015-11-20

    We report the complete genome sequence of Arthrobacter sp. ERGS1:01, a novel bacterium which produces industrial enzymes at low temperature. East Rathong glacier in Sikkim Himalayas is untouched and unexplored for microbial diversity though it has a rich source of glaciers, alpine and meadows. Genome sequence has provided the basis for understanding its adaptation under harsh condition of Himalayan glacier, its ability to produce cold active industrial enzymes and has unlocked opportunities for microbial bioprospection from East Rathong glacier.

  4. Degradation of Swainsonine by the NADP-Dependent Alcohol Dehydrogenase A1R6C3 in Arthrobacter sp. HW08

    Directory of Open Access Journals (Sweden)

    Yan Wang

    2016-05-01

    Full Text Available Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this study, we used label-free quantitative proteomics method based on liquid chromatography-electrospray ionization-tandem mass spectrometry to dissect the mechanism of swainsonine biodegradation by Arthrobacter sp. HW08. The results showed that 129 differentially expressed proteins were relevant to swainsonine degradation. These differentially expressed proteins were mostly related to the biological process of metabolism and the molecular function of catalytic activity. Among the 129 differentially expressed proteins, putative sugar phosphate isomerase/epimerase A1R5X7, Acetyl-CoA acetyltransferase A0JZ95, and nicotinamide adenine dinucleotide phosphate (NADP-dependent alcohol dehydrogenase A1R6C3 were found to contribute to the swainsonine degradation. Notably, NADP-dependent alcohol dehyrodgenase A1R6C3 appeared to play a major role in degrading swainsonine, but not as much as Arthrobacter sp. HW08 did. Collectively, our findings here provide insights to understand the mechanism of swainsonine degradation in bacteria.

  5. Early changes of CD4+CD25+Foxp3+ regulatory T cells and Th1/Th2, Tc1/Tc2 profiles in the peripheral blood of rats with controlled hemorrhagic shock and no fluid resuscitation

    Institute of Scientific and Technical Information of China (English)

    ZHANG Qin; LU Yuan-qiang; JIANG Jiu-kun; GU Lin-hui; MOU Han-zhou

    2012-01-01

    Background Hemorrhagic shock induces immune dysfunction.Regulatory T cells (Tregs),T-helper (Th) cells,and cytotoxic T-lymphocytes (CTLs) can execute many crucial actions in immune and inflammatory responses.This study was conducted to investigate the early pathophysiological changes of CD4+CD25+Foxp3+ Treg and Th1/Th2,Tc1/Tc2profiles in the peripheral blood of rats with controlled hemorrhagic shock and no fluid resuscitation. Methods A rat model of controlled hemorrhagic shock with no fluid resuscitation was established.Peripheral blood samples were taken before and four hours after hemorrhagic shock with no fluid resuscitation.Three color flow cytometry was used to detect Tregs,Th1,Th2,Tc1 and Tc2 cells in the samples.Results In the peripheral blood of rats,the percentage of Tregs four hours after hemorrhagic shock was significantly lower than before hemorrhagic shock (P=0.001).The ratios of Th1/Th2 and Tc1/Tc2 were changed from (23.08±8.98)%to (23.91±15.36)%,and from (40.40:1:21.56)% to (65.48±23.88)%,respectively.Conclusions At an eady stage,the advent of hemorrhagic shock is related to an early decrease of Tregs,and a mild shift in the Th1/Th2,Tc1/Tc2 balance toward Th1 and Tc1 dominance.These changes are part of a hyper-inflammatory state of the host,and will deteriorate the maintenance of immune balance.Further influences and detailed mechanisms need to be investigated.

  6. Intrinsic MyD88-Akt1-mTOR Signaling Coordinates Disparate Tc17 and Tc1 Responses during Vaccine Immunity against Fungal Pneumonia.

    Directory of Open Access Journals (Sweden)

    Som Gowda Nanjappa

    2015-09-01

    Full Text Available Fungal infections have skyrocketed in immune-compromised patients lacking CD4+ T cells, underscoring the need for vaccine prevention. An understanding of the elements that promote vaccine immunity in this setting is essential. We previously demonstrated that vaccine-induced IL-17A+ CD8+ T cells (Tc17 are required for resistance against lethal fungal pneumonia in CD4+ T cell-deficient hosts, whereas the individual type I cytokines IFN-γ, TNF-α and GM-CSF, are dispensable. Here, we report that T cell-intrinsic MyD88 signals are crucial for these Tc17 cell responses and vaccine immunity against lethal fungal pneumonia in mice. In contrast, IFN-γ+ CD8+ cell (Tc1 responses are largely normal in the absence of intrinsic MyD88 signaling in CD8+ T cells. The poor accumulation of MyD88-deficient Tc17 cells was not linked to an early onset of contraction, nor to accelerated cell death or diminished expression of anti-apoptotic molecules Bcl-2 or Bcl-xL. Instead, intrinsic MyD88 was required to sustain the proliferation of Tc17 cells through the activation of mTOR via Akt1. Moreover, intrinsic IL-1R and TLR2, but not IL-18R, were required for MyD88 dependent Tc17 responses. Our data identify unappreciated targets for augmenting adaptive immunity against fungi. Our findings have implications for designing fungal vaccines and immune-based therapies in immune-compromised patients.

  7. Intrinsic MyD88-Akt1-mTOR Signaling Coordinates Disparate Tc17 and Tc1 Responses during Vaccine Immunity against Fungal Pneumonia.

    Science.gov (United States)

    Nanjappa, Som Gowda; Hernández-Santos, Nydiaris; Galles, Kevin; Wüthrich, Marcel; Suresh, M; Klein, Bruce S

    2015-09-01

    Fungal infections have skyrocketed in immune-compromised patients lacking CD4+ T cells, underscoring the need for vaccine prevention. An understanding of the elements that promote vaccine immunity in this setting is essential. We previously demonstrated that vaccine-induced IL-17A+ CD8+ T cells (Tc17) are required for resistance against lethal fungal pneumonia in CD4+ T cell-deficient hosts, whereas the individual type I cytokines IFN-γ, TNF-α and GM-CSF, are dispensable. Here, we report that T cell-intrinsic MyD88 signals are crucial for these Tc17 cell responses and vaccine immunity against lethal fungal pneumonia in mice. In contrast, IFN-γ+ CD8+ cell (Tc1) responses are largely normal in the absence of intrinsic MyD88 signaling in CD8+ T cells. The poor accumulation of MyD88-deficient Tc17 cells was not linked to an early onset of contraction, nor to accelerated cell death or diminished expression of anti-apoptotic molecules Bcl-2 or Bcl-xL. Instead, intrinsic MyD88 was required to sustain the proliferation of Tc17 cells through the activation of mTOR via Akt1. Moreover, intrinsic IL-1R and TLR2, but not IL-18R, were required for MyD88 dependent Tc17 responses. Our data identify unappreciated targets for augmenting adaptive immunity against fungi. Our findings have implications for designing fungal vaccines and immune-based therapies in immune-compromised patients.

  8. Production of Xylanase from Arthrobacter sp. MTCC 6915 Using Saw Dust As Substrate under Solid State Fermentation

    Directory of Open Access Journals (Sweden)

    Sevanan Murugan

    2011-01-01

    Full Text Available Saw dust was used as substrate for xylanase production from Arthrobacter sp. MTCC 6915. The study of period of incubation, temperature, pH, carbon, and nitrogen sources for xylanase production was optimized. Xylanase production was found to be optimum at an incubation period of 96 hrs (117.0 U/mL, temperature 30°C (105.0 U/mL, and pH 9.0 (102.9 U/mL. The results showed that the xylanase production was found to be higher in the presence of carboxymethylcellulose (176.4 U/mL and dextrose (126.0 U/mL. It was also observed that peptone (170.1 U/mL and beef extract (161.7 U/mL supported maximum xylanase production.The enzyme was characterized and found to be fairly active at pH 9 (764.4 U/mL and temperature 60°C (819 U/mL. Even in the present study, a major difference in the production temperature (30°C and optimal temperature (60°C of the enzyme activity was observed. However, the pH of the production media and the enzyme activity were found to be the same (pH 9.

  9. TC1合金表面电火花沉积WC-8Co涂层界面行为%Interface behavior of WC-8Co coating on Ti alloy produced by electrospark deposition

    Institute of Scientific and Technical Information of China (English)

    汪瑞军; 钱乙余; 黄小鸥; 刘军

    2003-01-01

    钛合金在航空、航天工业得到了广泛应用.但其耐磨性差,对磨面容易产生粘结及对微动磨损敏感等缺点,限制其应用领域的进一步扩大.实践证明,采用电火花强化技术在TC1合金表面制造WC-8Co强化层,可以有效提高TC1基体表面耐磨性能.作者研究了WC-8Co强化层的表面状态、界面行为以及相结构组成,认为TC1合金表面强化高熔点的WC-8Co材料,厚度可大于50 μm;强化层与基体之间存在过渡区;强化层表面由TiC、W2C和少量W组成;强化层截面的显微硬度是基体的3倍以上.

  10. Degradation and induction specificity in actinomycetes that degrade p-nitrophenol

    Energy Technology Data Exchange (ETDEWEB)

    Hanne, L.F.; Kirk, L.L.; Appel, S.M.; Narayan, A.D.; Bains, K.K. (California State Univ., Chico, CA (United States))

    1993-10-01

    We have isolated two soil bacteria (identified as Arthrobacter aurescens TW17 and Nocardia sp. strain TW2) capable of degrading p-nitrophenol (PNP) and numerous other phenolic compounds. A. aurescens TW17 contains a large plasmid which correlated with the PNP degradation phenotype. Degradation of PNP by A. aurescens TW 17 was induced by preexposure to PNP, 4-nitrocatechol, 3-methyl-4-nitrophenol, or m-nitrophenol, whereas PNP degradation by Nocardia sp. strain TW2 was induced by PNP, 4-nitrocatechol, phenol, p-cresol, or m-nitrophenol. A. aurescens TW17 initially degraded PNP to hydroquinone and nitrite. Nocardia sp. strain TW2 initially converted PNP to hydroquinone or 4-nitrocatechol, depending upon the inducing compound.

  11. Enhanced U(VI) release from autunite mineral by aerobic Arthrobacter sp. in the presence of aqueous bicarbonate

    Energy Technology Data Exchange (ETDEWEB)

    Katsenovich, Yelena; Carvajal, Denny A.; Wellman, Dawn M.; Lagos, Leonel

    2012-04-20

    The bacterial effect on U(VI) leaching from the autunite mineral (Ca[(UO{sub 2})(PO{sub 4})]{sub 2} {center_dot} 3H{sub 2}O) was investigated to provide a more comprehensive understanding into important microbiological processes affecting autunite stability within subsurface bicarbonate-bearing environments. Experiments were performed in a culture of G975 Arthrobacter oxydans strain, herein referred to as G975, a soil bacterium previously isolated from Hanford Site soil. 91 mg of autunite powder and 50 mL of phosphorus-limiting sterile media were amended with bicarbonate ranging between 1-10 mM in glass reactor bottles and inoculated with G975 strain after the dissolution of autunite was at steady state. SEM observations indicated G975 formed a biofilm on the autunite surface and penetrated the mineral cleavages. The mineral surface colonization by bacteria tended to increase concomitantly with bicarbonate concentrations. Additionally, a sterile cultureware with inserts was used in non-contact bioleaching experiments where autunite and bacteria cells were kept separately. The data suggest the G975 bacteria is able to enhance U(VI) leaching from autunite without the direct contact with the mineral. In the presence of bicarbonate, the damage to bacterial cells caused by U(VI) toxicity was reduced, yielding similar values for total organic carbon (TOC) degradation and cell density compared to U(VI)-free controls. The presence of active bacterial cells greatly enhanced the U(VI) bioleaching from autunite in bicarbonate-amended media.

  12. Enhanced U(VI) release from autunite mineral by aerobic Arthrobacter sp. in the presence of aqueous bicarbonate

    Energy Technology Data Exchange (ETDEWEB)

    Katsenovich, Yelena P.; Carvajal, Denny A.; Wellman, Dawn M.; Lagos, Leonel E.

    2012-05-01

    The bacterial effect on U(VI) release from the autunite mineral (Ca[(UO2)(PO4)]2•3H2O) was investigated to provide a more comprehensive understanding of the important microbiological processes affecting autunite stability within subsurface bicarbonate-bearing environments. Experiments were performed in a culture of the Arthrobacter oxydans G975 strain, herein referred to as G975, a soil bacterium previously isolated from Hanford Site soil. 91 mg of autunite powder and 50 mL of phosphorous-limiting sterile media were amended with bicarbonate (ranging between 1 and 10 mM) in glass reactor bottles and inoculated with the G975 strain after the dissolution of autunite was at steady state. SEM observations indicated that G975 formed a biofilm on the autunite surface and penetrated the mineral cleavages. The mineral surface colonization by bacteria tended to increase concomitantly with bicarbonate concentrations. Additionally, a sterile culture-ware with inserts was used in non-contact dissolution experiments where autunite and bacteria cells were kept separately. The data suggest that G975 bacteria is able to enhance the release of U(VI) from autunite without direct contact with the mineral. In the presence of bicarbonate, the damage to bacterial cells caused by U(VI) toxicity was reduced, yielding similar values for total organic carbon (TOC) degradation and cell density compared to U(VI)-free controls. The presence of active bacterial cells greatly enhanced the release of U(VI) from autunite in bicarbonate-amended media.

  13. Identification of a recombinant inulin fructotransferase (difructose dianhydride III forming) from Arthrobacter sp. 161MFSha2.1 with high specific activity and remarkable thermostability.

    Science.gov (United States)

    Wang, Xiao; Yu, Shuhuai; Zhang, Tao; Jiang, Bo; Mu, Wanmeng

    2015-04-08

    Difructose dianhydride III (DFA III) is a functional carbohydrate produced from inulin by inulin fructotransferase (IFTase, EC 4.2.2.18). In this work, an IFTase gene from Arthrobacter sp. 161MFSha2.1 was cloned and expressed in Escherachia coli. The recombinant enzyme was purified by metal affinity chromatography. It showed significant inulin hydrolysis activity, and the produced main product from inulin was determined as DFA III by nuclear magnetic resonance analysis. The molecular mass of the purified protein was calculated to be 43 and 125 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and gel filtration, respectively, suggesting the native enzyme might be a homotrimer. The recombinant enzyme showed maximal activity as 2391 units/mg at pH 6.5 and 55 °C. It displayed the highest thermostability among previously reported IFTases (DFA III forming) and was stable up to 80 °C for 4 h of incubation. The smallest substrate was determined as nystose. The conversion ratio of inulin to DFA III reached 81% when 100 g/L inulin was catalyzed by 80 nM recombinant enzyme for 20 min at pH 6.5 and 55 °C. All of these data indicated that the IFTase (DFA III forming) from Arthrobacter sp. 161MFSha2.1 had great potential for industrial DFA III production.

  14. Key enzymes enabling the growth of Arthrobacter sp. strain JBH1 with nitroglycerin as the sole source of carbon and nitrogen.

    Science.gov (United States)

    Husserl, Johana; Hughes, Joseph B; Spain, Jim C

    2012-05-01

    Flavoprotein reductases that catalyze the transformation of nitroglycerin (NG) to dinitro- or mononitroglycerols enable bacteria containing such enzymes to use NG as the nitrogen source. The inability to use the resulting mononitroglycerols limits most strains to incomplete denitration of NG. Recently, Arthrobacter strain JBH1 was isolated for the ability to grow on NG as the sole source of carbon and nitrogen, but the enzymes and mechanisms involved were not established. Here, the enzymes that enable the Arthrobacter strain to incorporate NG into a productive pathway were identified. Enzyme assays indicated that the transformation of nitroglycerin to mononitroglycerol is NADPH dependent and that the subsequent transformation of mononitroglycerol is ATP dependent. Cloning and heterologous expression revealed that a flavoprotein catalyzes selective denitration of NG to 1-mononitroglycerol (1-MNG) and that 1-MNG is transformed to 1-nitro-3-phosphoglycerol by a glycerol kinase homolog. Phosphorylation of the nitroester intermediate enables the subsequent denitration of 1-MNG in a productive pathway that supports the growth of the isolate and mineralization of NG.

  15. Increased iron-stress resilience of maize through inoculation of siderophore-producing Arthrobacter globiformis from mine.

    Science.gov (United States)

    Sharma, Meenakshi; Mishra, Vandana; Rau, Nupur; Sharma, Radhey Shyam

    2016-07-01

    Iron deficiency is common among graminaceous crops. Ecologically successful wild grasses from iron-limiting habitats are likely to harbour bacteria which secrete efficient high-affinity iron-chelating molecules (siderophores) to solubilize and mobilize iron. Such siderophore-producing rhizobacteria may increase the iron-stress resilience of graminaceous crops. Considering this, 51 rhizobacterial isolates of Dichanthium annulatum from iron-limiting abandoned mine (∼84% biologically unavailable iron) were purified and tested for siderophore production; and efficacy of Arthrobacter globiformis inoculation to increase iron-stress resilience of maize and wheat was also evaluated. 16S rRNA sequence analyses demonstrated that siderophore-producing bacteria were taxonomically diverse (seven genera, nineteen species). Among these, Gram-positive Bacillus (eleven species) was prevalent (76.92%). A. globiformis, a commonly found rhizobacterium of graminaceous crops was investigated in detail. Its siderophore has high iron-chelation capacity (ICC: 13.0 ± 2.4 μM) and effectively dissolutes diverse iron-complexes (FeCl3 : 256.13 ± 26.56 μM/ml; Fe2 O3 red: 84.3 ± 4.74 μM/ml; mine spoil: 123.84 ± 4.38 μM/ml). Siderophore production (ICC) of A. globiformis BGDa404 also varied with supplementation of different iron complexes. In plant bioassay with iron-deficiency sensitive species maize, A. globiformis inoculation triggered stress-associated traits (peroxidase and proline) in roots, enhanced plant biomass, uptake of iron and phosphate, and protein and chlorophyll contents. However, in iron deficiency tolerant species wheat, growth improvement was marginal. The present study illustrates: (i) rhizosphere of D. annulatum colonizing abandoned mine as a "hotspot" of siderophore-producing bacteria; and (ii) potential of A. globiformis BGDa404 inoculation to increase iron-stress resilience in maize. A. globiformis BGDa404 has the potential to develop as

  16. PLASMID-ENCODED PHTHALATE CATABOLIC PATHWAY IN ARTHROBACTER KEYSERI 12B: BIOTRANSFORMATIONS OF 2-SUBSTITUTED BENZOATES AND THEIR USE IN CLONING AND CHARACTERIZATION OF PHTHALATE CATABOLISM GENES AND GENE PRODUCTS

    Science.gov (United States)

    Several 2-substituted benzoates (including 2-trifluoromethyl-, 2-chloro-, 2-bromo-, 2-iodo-, 2-nitro-, 2-methoxy-, and 2-acetyl-benzoates) were converted by phthalate-grown Arthrobacter keyseri 12B to the corresponding 2-substituted 3,4-dihydroxybenzoates (protocatechuates)...

  17. Dipolarization observed by TC1 and ClusterII during substorm in Sep. 14, 2004%一次磁层亚暴期间磁场偶极化的尾向传播

    Institute of Scientific and Technical Information of China (English)

    曹馨; Korth A.; Frazen M.; Zong Q. G.; Lueck E.; Carr C.; Reme H.; Glassmeier K. H.; 濮祖荫; 张辉; 傅绥燕; 马志伟; 肖池阶; 刘振兴; 谢伦; Dunlpo M. W.

    2007-01-01

    利用TC1、Cluster和Polar结合极光和同步高度及地磁的观测,研究了2004年9月14日1730~1930 UT时间段的亚暴偶极化过程.此前行星际磁场持续南向几个小时.亚暴初发(Onset)开始于1823 UT.2 min之后,同步高度的LANL-02A在子夜附近观测到了明显的能量电子增强(Injection)事件,而TC1在1827UT左右在磁尾(-10,-2, 0)RE (GSE)观测到了磁场BX的突然下降,伴随着等离子体压强和温度的突然增加及磁场的强烈扰动.在(-16, 1, 3)RE (GSE) 的Cluster上相同的仪器观测到相同的现象,只是比TC1观测到的晚大约23 min,在1850 UT左右.虽然Polar在更靠近地球的较高纬度(-7.5, 3.5, -4.0)RE (GSE)附近,也在1855 UT左右观测到了这种磁场偶极化现象.以上的观测时序表明TC1、Cluster观测到的磁场偶极化比亚暴偶极化初始发生分别晚4 min和27 min.说明偶极化由近磁尾向中磁尾传播.详细计算表明偶极化源区的位置大约在X=-7.7RE~-8.6RE,而传播速度大约为70 km·s-1.在这个事件中亚暴的物理图像可能是中磁尾的近地重联产生的地向高速流到达近磁尾,为近磁尾的亚暴触发创造了条件;亚暴在近磁尾触发之后,磁场偶极化峰面向中磁尾传播.

  18. Bioremediation strategies for removal of residual atrazine in the boreal groundwater zone.

    Science.gov (United States)

    Nousiainen, Aura O; Björklöf, Katarina; Sagarkar, Sneha; Nielsen, Jeppe Lund; Kapley, Atya; Jørgensen, Kirsten S

    2015-12-01

    Strategies for bioremediation of atrazine, a pesticide commonly polluting groundwater in low concentrations, were studied in two boreal nonagricultural soils. Atrazine was not mineralized in soil without bioremediation treatments. In biostimulation treatment with molasses, up to 52% of atrazine was mineralized at 10 °C, even though the degradation gene copy numbers did not increase. Incubations with radioactively labeled atrazine followed by microautoradiographic analysis revealed that bioremediation strategies increased the relative proportion of active degraders from 0.3 up to 1.9% of the total bacterial count. These results indicate that atrazine degradation might not solely be facilitated by atzA/trzN-atzB genes. In combined biostimulation treatment using citrate or molasses and augmentation with Pseudomonas citronellolis ADP or Arthrobacter aurescens strain TC1, up to 76% of atrazine was mineralized at 30 °C, and the atrazine degradation gene numbers increased up to 10(7) copies g(-1) soil. Clone libraries from passive samplers in groundwater monitoring wells revealed the presence of phylogenetic groups formerly shown to include atrazine degraders, and the presence of atrazine degradation genes atzA and atzB. These results show that the mineralization of low concentrations of atrazine in the groundwater zone at low temperatures is possible by bioremediation treatments.

  19. A new cold-adapted β-D-galactosidase from the Antarctic Arthrobacter sp. 32c – gene cloning, overexpression, purification and properties

    Directory of Open Access Journals (Sweden)

    Kur Józef

    2009-07-01

    Full Text Available Abstract Background The development of a new cold-active β-D-galactosidases and microorganisms that efficiently ferment lactose is of high biotechnological interest, particularly for lactose removal in milk and dairy products at low temperatures and for cheese whey bioremediation processes with simultaneous bio-ethanol production. Results In this article, we present a new β-D-galactosidase as a candidate to be applied in the above mentioned biotechnological processes. The gene encoding this β-D-galactosidase has been isolated from the genomic DNA library of Antarctic bacterium Arthrobacter sp. 32c, sequenced, cloned, expressed in Escherichia coli and Pichia pastoris, purified and characterized. 27 mg of β-D-galactosidase was purified from 1 L of culture with the use of an intracellular E. coli expression system. The protein was also produced extracellularly by P. pastoris in high amounts giving approximately 137 mg and 97 mg of purified enzyme from 1 L of P. pastoris culture for the AOX1 and a constitutive system, respectively. The enzyme was purified to electrophoretic homogeneity by using either one step- or a fast two step- procedure including protein precipitation and affinity chromatography. The enzyme was found to be active as a homotrimeric protein consisting of 695 amino acid residues in each monomer. Although, the maximum activity of the enzyme was determined at pH 6.5 and 50°C, 60% of the maximum activity of the enzyme was determined at 25°C and 15% of the maximum activity was detected at 0°C. Conclusion The properties of Arthrobacter sp. 32cβ-D-galactosidase suggest that this enzyme could be useful for low-cost, industrial conversion of lactose into galactose and glucose in milk products and could be an interesting alternative for the production of ethanol from lactose-based feedstock.

  20. Effect of Nocardia rubra cell wall skeleton (Nr-CWS) on oncogenicity of TC-1 cells and anti-human papillomavirus effect of Nr-CWS in lower genital tract of women%Nr-CWS对TC-1细胞致瘤作用的影响及抗女性下生殖道人乳头状瘤病毒感染的研究

    Institute of Scientific and Technical Information of China (English)

    赵健; 詹少兵; 李雪倩; 周玲; 杨英捷; 廖秦平

    2007-01-01

    目的 探讨Nr-CWS对含HPV16型病毒基因的TC-1细胞荷瘤鼠肿瘤生长的影响及对女性下生殖道HPV感染的清除效果.方法 SCID小鼠分别注射TC-1细胞形成肿瘤模型后随机分成3组,分别注射生理盐水、60 μg/ml和120 μg/ml Nr-CWS,观察肿瘤生长的情况.临床选取45例单纯HPV感染者使用Nr-CWS 1个月、3个月后再次检测HPV,分析Nr-CWS对生殖道HPV感染的清除效果.结果 动物实验表明两组用药组的肿瘤体重明显低于对照组,抑瘤率分别为59.1%和84.2%;三组瘤重用秩和检验分析P<0.05,差异有统计学意义;临床实验结果显示用药后3个月HPV检测转阴23例(51.1%),型别减少9例(20%),无效13例(28.9%);治愈率与自然转阴率31%相比较,X2检验P=0.005,差异有统计学意义.结论 Nr-CWS对HPV16型病毒基因的TC-1细胞荷瘤鼠肿瘤有明显的抑制作用;且对临床女性下生殖道HPV感染有一定的清除作用.

  1. Interaction mechanism between Arthrobacter oxydans and BaP-Cd%氧化节杆菌与苯并[a]芘-镉交互作用机理

    Institute of Scientific and Technical Information of China (English)

    邓军; 尹华; 叶锦韶; 彭辉; 秦华明; 龙焰; 何宝燕; 张娜

    2010-01-01

    利用HPLC、FTIR分析技术,研究了氧化节杆菌(Arthrobacter oxydans)对水体中苯并[a]芘(BaP)-镉(Cd)复合污染物交互作用机理.结果表明,BaP、Cd及BaP-Cd复合污染均对菌株的正常生长产生影响,其影响程度为:BaP-Cd>Cd>BaP;使用该菌投加到BaP、Cd浓度均为1 mg·L~(-1)的BaP-Cd复合污染无机盐溶液中,30 ℃、130 r·min~(-1),培养5 d后,体系BaP、Cd的残留量分别为0.39、0.65 mg·L~(-1);添加一定浓度的H_2O_2并保持体系呈偏碱性更适于该复合污染的处理.红外扫描分析显示,在微生物作用下,BaP的结构发生改变,菌株降解BaP和吸附Cd的过程主要与羟基、CC键、酰胺基团和C-H键有关.

  2. Probing the Role of Two Critical Residues in Inulin Fructotransferase (DFA III-Producing) Thermostability from Arthrobacter sp. 161MFSha2.1.

    Science.gov (United States)

    Yu, Shuhuai; Wang, Xiao; Zhang, Tao; Jiang, Bo; Mu, Wanmeng

    2016-08-10

    Inulin fructotransferase (IFTase) is an important enzyme that produces di-d-fructofuranose 1,2':2,3' dianhydride (DAF III), which is beneficial for human health. Present investigations mainly focus on screening and characterizing IFTase, including catalytic efficiency and thermostability, which are two important factors for enzymatic industrial applications. However, few reports aimed to improve these two characteristics based on the structure of IFTase. In this work, a structural model of IFTase (DFA III-producing) from Arthrobacter sp. 161MFSha2.1 was constructed through homology modeling. Analysis of this model reveals that two residues, Ser-309 and Ser-333, may play key roles in the structural stability. Therefore, the functions of the two residues were probed by site-directed mutagenesis combined with the Nano-DSC method and assays for residual activity. In contrast to other mutations, single mutation of serine 309 (or serine 333) to threonine did not decrease the enzymatic stability, whereas double mutation (serine 309 and serine 333 to threonine) can enhance thermostability (by approximately 5 °C). The probable mechanisms for this enhancement were investigated.

  3. capA, a cspA-like gene that encodes a cold acclimation protein in the psychrotrophic bacterium Arthrobacter globiformis SI55.

    Science.gov (United States)

    Berger, F; Normand, P; Potier, P

    1997-09-01

    By use of Arthrobacter globiformis SI55, a psychrotrophic bacterium capable of growth between -5 and +32 degrees C, we cloned and sequenced capA, a gene homologous to cspA encoding the major cold shock protein in Escherichia coli. The deduced protein sequence has a high level of identity with the sequences of other CspA-related proteins from various sources, and no particular residue or domain that could be specific to cold-adapted microorganisms emerged. We show that CapA was produced very rapidly following cold shock, but unlike its mesophilic counterparts, it was still expressed during prolonged growth at low temperature. Its synthesis is regulated at the translational level, and we showed that growth resumption following a temperature downshift correlated with CapA expression. Transient inhibitions in protein synthesis during the first stages of the cold shock response severely impaired the subsequent acclimation of A. globiformis SI55 to low temperature and delayed CapA expression. The cold shock response in A. globiformis SI55 is an adaptative process in which CapA may play a crucial role. We suggest that low-temperature acclimation is conditioned mainly by the ability of cells to restore an active translational machinery after cold shock in a process that may be different from that present in mesophiles.

  4. Toxicity screening of soils from different mine areas—A contribution to track the sensitivity and variability of Arthrobacter globiformis assay

    Energy Technology Data Exchange (ETDEWEB)

    Marques, Catarina R., E-mail: crmarques@ua.pt [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Caetano, Ana L. [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Haller, Andreas [ECT Oekotoxikologie GmbH, Böttgerstraße 2–14, D-65439 Flörsheim a. M. (Germany); Gonçalves, Fernando [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Pereira, Ruth [Faculdade de Ciências da Universidade do Porto, Rua do Campo Alegre, s/n, 4169-007 Porto (Portugal); Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas 289, P 4050-123 Porto (Portugal); Römbke, Jörg [ECT Oekotoxikologie GmbH, Böttgerstraße 2–14, D-65439 Flörsheim a. M. (Germany)

    2014-06-01

    Highlights: • The assay gave rapid and feasible discrimination of toxic soils to A. globiformis. • Sensitive and low variability response to soils from different regions. • Soil properties may interfere with metal toxicity and fluorescence measurements. • Proposal of a toxicity threshold for the contact assay regarding soils. • A. globiformis assay should be included in the Tier I of risk assessment frameworks. - Abstract: This study used the Arthrobacter globiformis solid-contact test for assessing the quality of soils collected in areas subjected to past and present mine activities in Europe (uranium mine, Portugal) and North Africa (phosphogypsum pile, Tunisia; iron mine, Morocco). As to discriminate the influence of soils natural variability from the effect of contaminants, toxicity thresholds were derived for this test, based on the dataset of each study area. Furthermore, the test sensitivity and variability was also evaluated. As a result, soils that inhibited A. globiformis dehydrogenase activity above 45% or 50% relatively to the control, were considered to be toxic. Despite the soil metal content determined, the properties of soils seemed to influence dehydrogenase activity. Overall, the contact test provided a coherent outcome comparing to other more time-consuming and effort-demanding ecotoxicological assays. Our results strengthened the feasibility and ecological relevance of this assay, which variability was quite reduced hence suggesting its potential integration within the test battery of tier 1 of soil risk assessment schemes.

  5. Laser Welding of TC-1 Titanium Alloy

    Institute of Scientific and Technical Information of China (English)

    Hanbin DU; Lunji HU; Xiyuan HU; Jianhua LIU

    2003-01-01

    The technology of CO2 laser welding and joint properties of titanium alloy were investigated. The problem of moltenpool protection was resolved by designing a shielding trailer and a special clamp. Joints with silvery appearance wereobtained, which have no pore and crack. In addition, the welding speed could reach 3 m/min for the plate of 1.5 mmthickness being penetrated. The reason of the porosity formation in partial penetration joints is that the keyholescan be easily cut apart in the radial direction, which makes the gas enclosed in the molten pool. The surface oxideof specimens can not affect the porosity formation in welds directly.

  6. Biofilm formation on the surface of polylactide during its biodegradation in different environments.

    Science.gov (United States)

    Walczak, Maciej; Swiontek Brzezinska, Maria; Sionkowska, Alina; Michalska, Marta; Jankiewicz, Urszula; Deja-Sikora, Edyta

    2015-12-01

    The research was aimed at determining the abundance and viability of biofilm formed on the surface of polylactide (PLA) during its biodegradation in different environments. It was also aimed at isolating biofilm forming bacteria, determining their hydrolytic activity and taxonomic status. The first step was to evaluate PLA biodegradability in lake water, compost and soil, using OxiTop Control. The next step was to assess the ability of isolated bacteria to form biofilm in the investigated environments and to evaluate the biofilm structure. The results indicate that PLA is sensitive to biodegradation in any environment, particularly in compost. During this process biofilm of high viability was observed on the surface of PLA. Based on the 16S rRNA gene sequence, the biofilm-forming bacteria were classified as the following species: Acidovorax sp. LW9, Chryseobacterium sp. LW2, Aeromonas veronii LW8, Arthrobacter aurescens LG2, Arthrobacter sp. LG12, A. aurescens LG9, Elizabethkingia meningoseptica LK3, A. aurescens LK9, A. aurescens and LK7. The results show that different bacterial species formed biofilm of different abundance and hydrolytic activitiy levels.

  7. Inoculation of PAH-degrading strains of Fusarium solani and Arthrobacter oxydans in rhizospheric sand and soil microcosms: microbial interactions and PAH dissipation.

    Science.gov (United States)

    Thion, Cécile; Cébron, Aurélie; Beguiristain, Thierry; Leyval, Corinne

    2013-07-01

    Very little is known about the influence of bacterial-fungal ecological interactions on polycyclic aromatic hydrocarbon (PAH) dissipation in soils. Fusarium solani MM1 and Arthrobacter oxydans MsHM11 can dissipate PAHs in vitro. We investigated their interactions and their effect on the dissipation of three PAHs-phenanthrene (PHE), pyrene (PYR) and dibenz(a,h)anthracene (DBA)-in planted microcosms, in sterile sand or non-sterile soil. In sterile sand microcosms planted with alfalfa, the two microbes survived and grew, without any significant effect of co-inoculation. Co-inoculation led to the dissipation of 46 % of PHE after 21 days. In soil microcosms, whether planted with alfalfa or not, both strains persisted throughout the 46 days of the experiment, without any effect of co-inoculation or of alfalfa, as assessed by real-time PCR targeting taxon-level indicators, i.e. Actinobacteria 16S rDNA and the intergenic transcribed spacer specific to the genus Fusarium. The microbial community was analyzed by temporal temperature gradient electrophoresis and real-time PCR targeting bacterial and fungal rDNA and PAH-ring hydroxylating dioxygenase genes. These communities were modified by PAH pollution, which selected PAH-degrading bacteria, by the presence of alfalfa and, concerning the bacterial community, by inoculation. PHE and PYR concentrations significantly decreased (91 and 46 %, respectively) whatever the treatment, but DBA concentration significantly decreased (30 %) in planted and co-inoculated microcosms only.

  8. In Silico Approach to Support that p-Nitrophenol Monooxygenase from Arthrobacter sp. Strain JS443 Catalyzes the Initial Two Sequential Monooxygenations.

    Science.gov (United States)

    Kallubai, Monika; Amineni, Umamaheswari; Mallavarapu, Megharaj; Kadiyala, Venkateswarlu

    2015-06-01

    p-Nitrophenol (PNP), used primarily for manufacturing pesticides and dyes, has been recognized as a priority environmental pollutant. It is therefore important to reduce the input of this toxicant into the environment and to establish approaches for its removal from the contaminated sites. PNP monooxygenase, a novel enzyme from Gram-positive bacteria like Arthrobacter sp. and Bacillus sp., that comprises two components, a flavoprotein reductase and an oxygenase, catalyzes the initial two sequential monooxygenations to convert PNP to trihydroxybenzene. Accurate and reliable prediction of this enzyme-substrate interactions and binding affinity are of vital importance in understanding these catalytic mechanisms of the two sequential reactions. As crystal structure of the enzyme has not yet been published, we built a homology model for PNP monooxygenase using crystallized chlorophenol 4-monooxygenase from Burkholderia cepacia AC1100 (3HWC) as the template. The model was assessed for its reliability using PROCHECK, ERRAT and ProSA. Molecular docking of the physiological substrates, PNP and 4-nitrocatechol (4-NC), was carried out using Glide v5.7 implemented in Maestro v9.2, and the binding energies were calculated to substantiate the prediction. Docking complexes formed by molecular level interactions of PNP monooxygenase-PNP/4-NC without or with the cofactors, FAD and NADH, showed good correlation with the established experimental evidence that the two-component PNP monooxygenase catalyzes both the hydroxylation of PNP and the oxidative release of nitrite from 4-NC in B. sphaericus JS905. Furthermore, molecular dynamics simulations performed for docking complexes using Desmond v3.0 showed stable nature of the interactions as well.

  9. Influence of pH and inorganic phosphate on toxicity of zinc to Arthrobacter sp. isolated from heavy-metal-contaminated sediments.

    Science.gov (United States)

    Moberly, James G; Staven, Ari; Sani, Rajesh K; Peyton, Brent M

    2010-10-01

    Because of its high solubility over a wide range of pH conditions, zinc is found in many natural and human-impacted systems. Zinc speciation is critical in assessing zinc toxicity to microorganisms because it varies considerably with pH and is dependent on other aqueous constituents. Combined results of thermodynamic modeling, statistical analysis, and batch culture studies using Arthrobacter sp. JM018 suggest that the toxic species may not be solely limited to the free ion, but also includes ZnHPO(4)(0)(aq). Cellular uptake of ZnHPO(4)(0)(aq) through the inorganic phosphate transporter (Pit family), which requires a neutral metal phosphate complex for phosphate transport, may explain the observed toxicity. Based on visual MINTEQ (v3.0) modeling, at 50 μM total zinc, ZnHPO(4)(0)(aq) constitutes 33, 70, and 76% of the neutral metal phosphate pool at pH 6, 7, and 8, respectively. At 50 μM total zinc, cultures supplied with organic phosphate (glycerol-3-phosphate) show no significant response to pH (p = 0.13) while inhibition of inorganic phosphate-supplemented cultures, whose neutral metal phosphates are increasingly dominated by ZnHPO(4)(0)(aq), show significant pH dependence (p = 9.45 × 10(-7)). Using sodium to decrease the distribution of ZnHPO(4)(0)(aq) in the neutral metal phosphate pool also decreased the pH dependent toxicity, further supporting this mechanism. These findings show the important role of minor zinc species in organism toxicity and have wider implications because the Pit inorganic phosphate transport system is widely distributed in Bacteria, Archaea, and Eukarya.

  10. Ecological Interactions Between Metals and Microbes

    Energy Technology Data Exchange (ETDEWEB)

    Konopka, Allan E.

    2005-06-01

    Analysis of Lead Resistant Arthrobacter sp. SI-1 Arthrobacter sp. SI-1 was isolated from contaminated soils at the Seymour site, and was found to be resistant to Pb at concentrations near its solubility limit (150 micromolar). The genetic region that confers lead resistance is located on a plasmid (PSI-1)has been cloned. We have continued to analyze the sub-clones from the pSI-1 region. Initially we had predicted that ORF1-ORF5 were involved in lead resistance because their organization suggest a potential operon. In addition these same five genes have been found in a similar organization on a plasmid from Arthrobacter FB24, while the pAA1 plasmid from A. aurescens TC1 contains three of the five genes. In order to determine the minimum genes required for lead resistance a series of deletion mutants were constructed from the 14.7 kb clone pKJ60. Deletion of ORFs 3-5 did not have any measurable effect on the ability of the cloned fragment to rescue the lead resistance phenotype in a lead sensitive strain of E. coli (RW3110). The construct pKJ65 was generated by removing approximately 200 bp from the center region of ORF2, which codes for the P-Type ATPase; as expected this deletion resulted in a lead sensitive phenotype. While the genes downstream of ORF 2 do not appear to play a significant role in lead resistance the same cannot be said for ORF1 which is upstream. Based on amino acid sequence homology a BLAST search indicates ORF1 is likely a regulatory protein from the ArsR family. When ORF1 is removed (pKJ64, pKJ67), a lead sensitive phenotype occurs. Approximately 100 bp from the sequence of ORF1 was deleted (pKJ70) in order to test if ORF1 is required for lead resistance, or if the cells require something in the upstream non-coding region (binding site, promoter). Cells with pKJ70 show some limited growth in the presence lead, but it is generally much slower than the lead resistant constructs where ORF1 is present. These results suggest that ORF1 has a positive

  11. Degradation characteristics and identification and the degradation pathway of the atrazine-degrading strain DNS32%阿特拉津降解菌株DNS32的降解特性及分类鉴定与降解途径研究

    Institute of Scientific and Technical Information of China (English)

    郭火生; 王志刚; 孟冬芳; 王洋; 张庆媛; 张颖

    2012-01-01

    [Objective] The objective was to study the identification, degradation characteristics and the degradation pathway of the atrazine-degrading strain DNS32, and enrich the resources of atrazine-degrading bacteria. [Methods] Strain DNS32, which was isolated from black soil in this study, could utilize atrazine as the sole nitrogen source for growth, and its basic degradation characteristics were studied. The 16S rRNA gene phylogenetic analysis was used to identify of the strain DNS32. The degradation pathway was studied by degrading genes amplification and the measurement of the content of the final catabolite. [Results] The results showed that strain DNS32 had greater degradation capacity and could utilize certain amount of atrazine even under a relative low temperature. The 16S rRNA gene phylogenetic analysis showed that the 16S rRNA gene sequence of the strain DNS32 had a 99% similarity with that of Acinetobacter lwoffii. Atrazine-degrading genes trzN, atzB and atzC were amplified by PCR, and these genes enabled strain DNS32 decompose atrazine to cyanuric acid, in accordance with the degradation pathway of Arthrobacter aurescens TC1 proved by the measurement of the atrazine degradation rate and the content of the final catabolite. [Conclusion] This study enriched the resources of atrazine-degrading bacteria and provided useful informations to the study of the atrazine-degrading strains belonging to Acinetobacter.%[目的]研究阿特拉津降解菌株DNS32的菌种分类、降解特性及降解途径,丰富阿特拉津降解菌菌种资源.[方法]在长期施用阿特拉津的东北地区寒地黑土中筛选出一株以阿特拉津为唯一氮源生长的降解菌株DNS32,测定其基本降解特性,通过16SrRNA序列分析进行分类鉴定,并利用阿特拉津降解基因PCR扩增技术及降解产物生成量的测定,进一步揭示其降解途径.[结果]实验结果发现DNS32菌株具有较好的降解能力,且在相对较低温度下

  12. Variability in carbon and nitrogen isotope fractionation associated with bacterial hydrolysis of atrazine

    Science.gov (United States)

    Meyer, A.; Penning, H.; Elsner, M.

    2009-04-01

    Even after legislative prohibition in 1991 by the European Union, the pesticide atrazine and its metabolites are still detected in surface and ground water frequently exceeding the permitted drinking water concentration limit of 0,1 g/L. Despite much recent research on atrazine, its risk assessment in the environment is still a major challenge because of the difficulty of establishing mass balances in the subsurface. To obtain a better insight into the fate of atrazine, we developed compound-specific stable isotope analysis (CSIA) for atrazine. CSIA has proven valuable for assessing organic contaminants in subsurface environments, on the one hand for source identification and on the other hand to trace (bio)chemical degradation reactions through isotope fractionation in the compounds. Such assessment is based on the Rayleigh equation and therein on the isotope enrichment factor ɛ, which must be determined experimentally beforehand. In ongoing work, we therefore measured carbon and nitrogen isotope fractionation associated with biotic hydrolsis of atrazine. C and N isotope enrichment factors were determined in resting cell experiments for Pseudomonas sp. ADP, Chelatobacter heintzii and Arthrobacter aurescens TC1, strains that hydrolyse atrazine in the initial transformation reaction. Carbon and nitrogen isotope enrichment factors were distinctly different between the bacterial strains. However, when plotting shifts in carbon isotope ratios versus shifts in nitrogen isotope ratios the slopes of the different degradation experiments coincided well. These results give evidence that all bacterial strains were carrying out the same initial biochemical degradation reaction, but that the associated isotope fractionation, as represented by the enrichment factors, was masked to a different extent owing to different rate determining steps prior to the isotopically sensitive bond cleavage (commitment to catalysis). Our study therefore illustrates the benefit of multi

  13. 阿特拉津降解茵FM326(Arthrobacter sp.)的分离筛选、鉴定和生物学特性%Isolation, Screening and Identification of Atrazine-degrading Bacterium FM326(Arthrobacter sp.)

    Institute of Scientific and Technical Information of China (English)

    李明锐; 祖艳群; 陈建军; 湛方栋; 何永美; 李元

    2011-01-01

    采集除草剂阿特拉津污染的土壤,通过直接涂布法和富集驯化培养分离法,分别获得6株和5株能够降解阿特拉津的细菌.通过降解效率和降解动态试验,筛选到1株高效降解阿特拉津的菌株FM326,该菌株能以阿特拉津为唯一的碳源和氮源生长,培养96 h后对1000 mg· L-1阿特拉津降解效率达到97%.通过生理生化鉴定和16S rDNA序列分析,菌株FM326鉴定为节杆菌属(Arthrobacter sp.)细菌.该菌株表现出最适生长温度30~35℃,最适生长pH值5~9,好氧生长的生长特性.%The Iriazine herbicide atrazine(2-chloro-4-ethylamino-6-isopropyl-amino-s-triazine) is one of the most used pesticides. Atrazine is principally used for control of certain annual broadleaf and grass weeds, primarily in com but also in sorghum, sugarcane, and other crops. Although atrazine has relatively low persistency in soil, its remanets have been found in many higher concentrations even years after application due to widespread use. Microbial remediation is an effective and economic method to control the environment that has been polluted by atrazine. From herbicide contaminated soil, 5 atrazine degrading bacterial strains were isolated by enrichment culture, and 6 a- trazine-degrading bacterial strains were isolated by direct coating method. In the 11 strains, FM326 was screened out as the most highly efficient degradation bacteria by degradation test and could use atrazine as the sole carbon and nitrogen sources for growth. The degradation efficiency of strain FM326 was up to 97% within 96 hours while atrazine concentration was 1 000 mg-L"'. Strain FM326 was identified as Arthrobacter sp. According to physiological and biochemical tests and the phylogenic tree established by means of 16S rDNA sequencing. Moreover, strain FM326 was aerobic bacteria, its optimum temperature and pH value for growth was 30-35 t and 5~9, respectively. Strain of highly efficient degrading atrazine was found from soils

  14. Dual isotope plots reflect transformation pathways of pesticides: Potential to assess pesticide fate and elucidate transformation mechanisms

    Science.gov (United States)

    Meyer, Armin; Penning, Holger; Sorensen, Sebastian; Aamand, Jens; Elsner, Martin

    2010-05-01

    by Chelatobacter heintzii, Pseudomonas sp. ADP and Arthrobacter aurescens TC1 gave enrichment of 13-C, but depletion of 15-N. Comparison with abiotic reference experiments provided novel insight into the underlying enzymatic transformation mechanisms. Our investigations show how characteristic isotope patterns may significantly add to the present understanding of the environmental fate of pesticides.

  15. Pb2 + Tolerance and Adsorption of Arthrobacter sp. 12-1 Isolated from Lead-zinc Mine Tailing Dam%铅锌矿尾矿坝分离节杆菌12-1对Pb2+的耐受和吸附性能研究

    Institute of Scientific and Technical Information of China (English)

    陈志; 邹情雅; 潘晓鸿; 林璋; 关雄

    2014-01-01

    The extensive exploitation and usage of lead resources have caused serious environmental pollution problems currently. Bioremediation of Pb2 + contaminated water and soil environments using microbes is regarded as a promising technology due to the advantages of its cost-effective, easy operation and environmental-friendly properties. In order to understand Pb2+ biosorption characterization of microbes, an indigenous lead-resistant bacterium-Arthrobacter sp. 12-1(GenBank No. KM362724) was isolated from lead-zinc mine tailing dam, and the process and mechanism of Pb2+ biosorption by Arthrobacter sp. 12-1 were furtherly investigated in this study. Study on the growth of Arthrobacter sp. 12-1 in LB medium containing different concentration of Pb2+suggested that the highest Pb2+tolerant concentration of Arthrobacter sp. 12-1 was 800 mg/L. In water solution, 105 mg/L of Pb2+could be reduced to 2.17 mg/L by Arthrobacter sp. 12-1 within 24 h with biosorption rate of 97.93%. Microscopic investigation (atomic force microscopy and scanning electronic microscopy) combined with energy dispersive X-ray spectroscopy analysis showed that lead containing mineral was formed on the surface of cell after Pb2+sorption by Arthrobacter sp. 12-1. Further fourier transform infrared (FT- IR) analysis revealed that carboxyl, amide and phosphate groups of Arthrobacter sp. 12-1 might be involved in Pb2 + biosorption process. The results demonstrated that the Arthrobacter sp. 12-1 isolated from lead-zinc mine tailing dam had strong ability of Pb2 + resistance and biosorption, indicating an attractive prospect of practical applications in bioremediation Pb2+ contaminated water and soil environments. The present work provides much fundamental information for help in constructing feasible strategies for Pb2+bioremediation in the environment.%当前铅资源的粗放式开采和使用对环境造成了严重的污染。利用微生物修复铅污染具有费用低、易操作、环境友好等优

  16. Purification and characterization of β-galactosidase from Arthrobacter sp%节杆菌β-半乳糖苷酶的分离纯化及酶学性质研究

    Institute of Scientific and Technical Information of China (English)

    李珍爱; 唐蕾; 毛忠贵; 张建华; 杨瑞金

    2011-01-01

    分离纯化了由节杆菌所产的fI-半乳糖苷酶(EC 3.2.1.23)并研究了其酶学性质.以乳糖发酵培养基培养,离心收集茵体,超声破碎细胞得到粗酶液;采用硫酸铵沉淀、Phenyl-Sepharose疏水、DEAE-Sepharose离子交换和p-aminobelazyl-1-thio-β-galactopyranoside(PABTG)亲和层析方法进行酶的分离纯化,纯化倍数达到31.4;经SDS-PAGE检测分子量为30 kD.酶学性质的研究表明:该酶最适pH值为6.6,最适反应温度为37℃,pH在5.5~8.0,温度低于30℃时,相对酶活在1 h内保持在50%以上,较为稳定.以邻硝基苯-β-吡喃半乳糖苷(ONPG)为底物,米氏常数为4.64 mmol/L.%The purification and characterization of β-galactosidase (EC 3.2.1.23) produced by Arthrobacter sp. Were investigated. The bacterial cells cultured were gathered by centrifugation and disrupted by ultrasonication. The crude enzyme solution was precipitated by ammonium sulphate. Further enzyme purification was carried out by Phenyl- Sepharose, DEAE-Sepharose and p-amino-benzyl-l-thio-β-Dgalactopyranoside (PABTG) affinity chromatography. The purified β-galactosiclase was illustrated as a single band in SDS-PAGE with a purification fold of 31.4 and an apparent molecular weight of 30 kD. The maximum activity of the enzyme was determined at pH 6.6 and 37 ℃. Above 50% of the maximum activity of the enzyme was detected at pH 5.5~8.0 and 30 ℃. The Km for ONPG was 4.64 mmol/L.

  17. Characteristic isotope fractionation patterns in s-triazine degradation have their origin in multiple protonation options in the s-triazine hydrolase TrzN.

    Science.gov (United States)

    Schürner, Heide K V; Seffernick, Jennifer L; Grzybkowska, Anna; Dybala-Defratyka, Agnieszka; Wackett, Lawrence P; Elsner, Martin

    2015-03-17

    s-Triazine herbicides (atrazine, ametryn) are groundwater contaminants which may undergo microbial hydrolysis. Previously, inverse nitrogen isotope effects in atrazine degradation by Arthrobacter aurescens TC1 (i) delivered highly characteristic (13C/12C, 15N/14N) fractionation trends for pathway identification and (ii) suggested that the s-triazine ring nitrogen was protonated in the enzyme s-triazine hydrolase (TrzN) where (iii) TrzN crystal structure and mutagenesis indicated H+-transfer from the residue E241. This study tested the general validity of these conclusions for atrazine and ametryn with purified TrzN and a TrzN-E241Q site-directed mutant. TrzN-E241Q lacked activity with ametryn; otherwise, degradation consistently showed normal carbon isotope effects (εcarbon=-5.0‰±0.2‰ (atrazine/TrzN), εcarbon=-4.2‰±0.5‰ (atrazine/TrzN-E241Q), εcarbon=-2.4‰±0.3‰ (ametryn/TrzN)) and inverse nitrogen isotope effects (εnitrogen=2.5‰±0.1‰ (atrazine/TrzN), εnitrogen=2.1‰±0.3‰ (atrazine/TrzN-E241Q), εnitrogen=3.6‰±0.4‰ (ametryn/TrzN)). Surprisingly, TrzN-E241Q therefore still activated substrates through protonation implicating another proton donor besides E241. Sulfur isotope effects were larger in enzymatic (εsulfur=-14.7‰±1.0‰, ametryn/TrzN) than in acidic ametryn hydrolysis (εsulfur=-0.2‰±0.0‰, pH 1.75), indicating rate-determining C-S bond cleavage in TrzN. Our results highlight a robust inverse 15N/14N fractionation pattern for identifying microbial s-triazine hydrolysis in the environment caused by multiple protonation options in TrzN.

  18. 发酵产菊糖果糖转移酶的培养基设计及菌体生长动力学研究%Optimization of Inulin Fructotransferase-producing Medium and Determination of Cell Growth Kinetic Parameter for Arthrobacter ureafaciens SK-8.001

    Institute of Scientific and Technical Information of China (English)

    卢峥嵘; 赵萌; 沐万孟; 张涛; 江波

    2009-01-01

    In this paper,the optimal inulin fructotransferase-producing medium and fermentation kinetic parameters of Arthrobacter ureafaciens SK -8.001 were studied. The recipes of optimal media included 2. 5% inulin,0. 3% NaN0_3,0. 1% yeast extract,0. 01% MgSO_4,0. 04% KH_2P0_4,0. 001% FeSO_4·7H_2O. The maximum enzyme activity reached 19. 85 U/mL,which was 2. 04 fold higher than in initial media. The study on the fermentation process in the optimal media suggested the right time to add inducers into the media was 12 h or 66th hours during the fermentation. The cell growth kinetic model for SK-8.001 in batch fermentation was X (t) = 9. 356 05/ [1 + exp~((4.4222-0.1102l)) ].%对1株产菊糖果糖转移酶(inulin fructotransferase)的金黄色节杆菌(Arthrobacter ureafaciens)SK-8.001的产酶培养基进行了优化,同时对其在分批发酵过程中培养基组分变化和菌体生长动力学进行了研究.所得到的改进型产酶培养基配方为25 g/L菊糖,3 g/L NaNO_3,1g/L酵母膏,0.1 g/L MgSO_4,0.4g/L KH_2PO_4,0.01g/LFeSO_4·7H_2O.在此培养基中的最高酶活达到19.85 U/mL,较初始培养基提高了2.04倍.对在此培养基中Sk-8.001的发酵过程研究发现发酵12 h和66 h是较为理想的诱导物添加时刻.得到SK-8.001在优化培养基中分批培养的菌体生长动力学模型为:X(t)=9.356 05/[1+exp~((4.4222-0.1102:))].

  19. The Effects of Heterologous Expression of groEL from Arthrobacter simplex on the Resistance Performance of Escherichia coli%简单节杆菌groEL基因表达对大肠杆菌抗逆性能的影响

    Institute of Scientific and Technical Information of China (English)

    王艳霞; 王红玲; 王敏; 骆健美

    2016-01-01

    Arthrobacter simplex,a strain with steroid C1,2 dehydrogenation ability,has been widely used in the steroid industry, usually adding ethanol in the transforming system may catalyze the dissolution of hydrophobic substrates. Our prior work by LC-MS/MS and bioinformatics analysis found that heat shock protein(HSP)GroEL was closely correlated to the cell adaptive behavior under ethanol stress condition. Based on this concept,groEL gene was cloned by PCR while usingA. simplexTCCC 11037 genome as a template. The results showed that the homologies of nucleotide and amino acid sequence of GroEL in the strain were the highest with that fromNocardioides sp. JS614 by the ratio of 89% and 95%,respectively. Then its heterologous expression was conducted in Escherichia coli BL21(DE3)with the vector pET-22b (+),and the results showed that the recombinant strain presented the significant increase on the survival performance under the shock condition with high-concentration of methanol,hypertonicity and superacid,as well as the growth performance under the proper stresses of them. The study was the first report on the cloning and expression of genegroEL fromA. simplex,and also provided fundamental data for exploring the biological function of HSP protein GroEL from A. simplex.%以简单节杆菌(Arthrobacter simplex)TCCC 11037基因组为模板,通过PCR方法进行groEL基因克隆,结果表明,该菌株中GroEL的核苷酸和氨基酸序列与Nocardioidessp. JS614来源的GroEL同源性最高,分别为89%和95%。通过pET-22b(+)将其在大肠杆菌BL21(DE3)中进行异源表达,结果表明,重组菌株在甲醇、高渗和强酸这3种压力高浓度冲击条件下的存活能力和适当压力条件下的生长性能均明显提高。

  20. 球形节杆菌C224分批发酵2-酮基-D-葡萄糖酸的条件优化及其动力学模型的构建%Optimization of 2-keto-D-gluconic acid batch fermentation by Arthrobacter globiformis C224 and its kinetics

    Institute of Scientific and Technical Information of China (English)

    孙文敬; 高培玲; 魏转; 崔凤杰; 周延政; 滕文华; 刘敬泽

    2013-01-01

    In the present study,the operation parameters including aeration rate and initial glucose concentration during 50-L batch fermentation were optimized to increase the 2-keto-D-gluconic acid (2KGA) productivity from rice starch hydrolysate by Arthrobacter globiformis C224.The kinetic models for describing the cell growth,2KGA production and glucose consumption were proposed by using Logistic/Luedeking-Piret equations and mass balance calculation.Results showed that the 2KGA yield decreased slightly and its productivity lowered significantly when the aeration rate was below 1.5 v · v-1 · m-1 The initial glucose concentrations varying from 120.0 g/L to 180.0 g/L were optimal.Under the optimized conditions,the productivities and yields reached to 6.36 ~6.54 g/(L · h) and 0.96 ~0.97 g/g,respectively.Those proposed models could fit the predictive values well with the obtained experimental data.The determination coefficients (R2) of all models were over 0.95,which also indicated that theses models could elucidate the 2KGA metabolic characteristics of Arthrobacter globiformis C224.%通过优化发酵条件,提高球形节杆菌C224菌株利用大米淀粉水解糖分批发酵2-酮基-D-葡萄糖酸的生产强度,并在此基础上构建其发酵动力学模型.在50 L的发酵罐上考察了通气量与葡萄耱浓度对2-酮基-D-葡萄糖酸发酵的影响,并基于Logistic方程、Luedeking-Piret方程和物料平衡计算分别构建了菌体生长、产物形成和底物消耗的动力学模型.研究结果表明,通气量低于1.5 v·v-1·m-1时,发酵生产强度明显减小,糖酸转化率有所降低;发酵培养基中的葡萄糖浓度以120.0~180.0 g/L为宜,过高或过低对生产强度和糖酸转化率均有不利影响.在适宜的发酵条件下,球形节杆菌C224菌株分批发酵生产2-酮基-D-葡萄糖酸的生产强度达6.36~6.54 g/(L h),糖酸转化率为0.96 ~ 0.97 g/g.所构建动力学模型的计算值与实验值拟合效果

  1. Metabolic products of microorganisms. 249. Tetracenomycins B3 and D3, key intermediates of the elloramycin and tetracenomycin C biosynthesis.

    Science.gov (United States)

    Rohr, J; Eick, S; Zeeck, A; Reuschenbach, P; Zähner, H; Fiedler, H P

    1988-08-01

    Tetracenomycins B3 and D3, besides tetracenomycin D (D1), were produced by a blocked mutant of the elloramycin producer Streptomyces olivaceus TU 2353. The compounds were isolated as red powders, and their structures were elucidated by comparing their physicochemical data with those of the known tetracenomycins A2, B1, B2, D and E. Tetracenomycin B3 (2), the main compound, and tetracenomycin D (3) were antibiotically inactive against Gram-positive and Gram-negative bacteria, whereas tetracenomycin D3 (1) showed a moderate activity against Bacillus subtilis and Arthrobacter aurescens. Tetracenomycin B3 (2) is the key intermediate where the biosynthesis of the elloramycins branches off from the line leading to tetracenomycin C (5) as the final product of the tetracenomycin biosynthesis branch.

  2. Abundances in planetary nebulae : NGC1535, NGC6629, He2-108, and Tc1

    NARCIS (Netherlands)

    Pottasch, S. R.; Surendiranath, R.; Bernard-Salas, J.

    2011-01-01

    Context. Models have been made of stars of a given mass that produce planetary nebulae that usually begin on the AGB (although they may begin earlier) and run to the white dwarf stage. While these models cover the so-called dredge-up phases when nuclear reactions occur and the newly formed products

  3. Abundances in planetary nebulae : NGC 1535, NGC 6629, He2-108, and Tc1

    NARCIS (Netherlands)

    Pottasch, S. R.; Surendiranath, R.; Bernard-Salas, J.

    2011-01-01

    Context. Models have been made of stars of a given mass that produce planetary nebulae that usually begin on the AGB (although they may begin earlier) and run to the white dwarf stage. While these models cover the so-called dredge-up phases when nuclear reactions occur and the newly formed products

  4. Pigments produced by the bacteria belonging to the genus Arthrobacter

    OpenAIRE

    Sutthiwong, N.; Caro, Y.; Fouillaud, M.; Laurent, P.; Valla, A.; Dufossé, L.

    2013-01-01

    Poster communication, 7th International Congress of Pigments in Food – New technologies towards health, through colors, Novara, Italy, June 18-21, 2013.; International audience; Since several decades, pigments have been used as a taxonomic tool for the identification and classification of bacteria. Nowadays, pigment producing microorganisms have been also widely interested in scientific disciplines because of their biotechnological potential. With the growing interest in microbial pigments be...

  5. Degradation of 4-fluorophenol by Arthrobacter sp strain IF1

    NARCIS (Netherlands)

    Ferreira, Maria Isabel M.; Marchesi, Julian R.; Janssen, Dick B.

    2008-01-01

    A Gram-positive bacterial strain capable of aerobic biodegradation of 4-fluorophenol (4-FP) as the sole source of carbon and energy was isolated by selective enrichment from soil samples collected near an industrial site. The organism, designated strain IF1, was identified as a member of the genus A

  6. Nitrogen starvation affects bacterial adhesion to soil

    Science.gov (United States)

    Borges, Maria Tereza; Nascimento, Antônio Galvão; Rocha, Ulisses Nunes; Tótola, Marcos Rogério

    2008-01-01

    One of the main factors limiting the bioremediation of subsoil environments based on bioaugmentation is the transport of selected microorganisms to the contaminated zones. The characterization of the physiological responses of the inoculated microorganisms to starvation, especially the evaluation of characteristics that affect the adhesion of the cells to soil particles, is fundamental to anticipate the success or failure of bioaugmentation. The objective of this study was to investigate the effect of nitrogen starvation on cell surface hydrophobicity and cell adhesion to soil particles by bacterial strains previously characterized as able to use benzene, toluene or xilenes as carbon and energy sources. The strains LBBMA 18-T (non-identified), Arthrobacter aurescens LBBMA 98, Arthrobacter oxydans LBBMA 201, and Klebsiella sp. LBBMA 204–1 were used in the experiments. Cultivation of the cells in nitrogen-deficient medium caused a significant reduction of the adhesion to soil particles by all the four strains. Nitrogen starvation also reduced significantly the strength of cell adhesion to the soil particles, except for Klebsiella sp. LBBMA 204–1. Two of the four strains showed significant reduction in cell surface hydrophobicity. It is inferred that the efficiency of bacterial transport through soils might be potentially increased by nitrogen starvation. PMID:24031246

  7. The virus-encoded chemokine vMIP-II inhibits virus-induced Tc1-driven inflammation

    DEFF Research Database (Denmark)

    Lindow, Morten; Nansen, Anneline; Bartholdy, Christina;

    2003-01-01

    virus-induced T-cell-mediated inflammation. This was done by use of the well-established model system murine lymphocytic choriomeningitis virus infection. Mice were infected in the footpad, and the induced CD8(+) T-cell-dependent inflammation was evaluated in mice subjected to treatment with vMIP-II. We...... found that inflammation was markedly inhibited in mice treated during the efferent phase of the antiviral immune response. In vitro studies revealed that vMIP-II inhibited chemokine-induced migration of activated CD8(+) T cells, but not T-cell-target cell contact, granule exocytosis, or cytokine release...... injected directly into the test site. In contrast to the marked inhibition of the effector phase, the presence of vMIP-II during the afferent phase of the immune response did not result in significant suppression of virus-induced inflammation. Taken together, these results indicate that chemokine...

  8. Intratumoral IL-12 Gene Therapy Results in the Crosspriming of Tc1 Cells Reactive Against Tumor-associated Stromal Antigens

    Science.gov (United States)

    Zhao, Xi; Bose, Anamika; Komita, Hideo; Taylor, Jennifer L; Kawabe, Mayumi; Chi, Nina; Spokas, Laima; Lowe, Devin B; Goldbach, Christina; Alber, Sean; Watkins, Simon C; Butterfield, Lisa H; Kalinski, Pawel; Kirkwood, John M; Storkus, Walter J

    2011-01-01

    HLA-A2 transgenic mice bearing established HLA-A2neg B16 melanomas were effectively treated by intratumoral (i.t.) injection of syngeneic dendritic cells (DCs) transduced to express high levels of interleukin (IL)-12, resulting in CD8+ T cell-dependent antitumor protection. In this model, HLA-A2-restricted CD8+ T cells do not directly recognize tumor cells and therapeutic benefit was associated with the crosspriming of HLA-A2-restricted type-1 CD8+ T cells reactive against antigens expressed by stromal cells [i.e., pericytes and vascular endothelial cells (VEC)]. IL-12 gene therapy-induced CD8+ T cells directly recognized HLA-A2+ pericytes and VEC flow-sorted from B16 tumor lesions based on interferon (IFN)-γ secretion and translocation of the lytic granule-associated molecule CD107 to the T cell surface after coculture with these target cells. In contrast, these CD8+ T effector cells failed to recognize pericytes/VEC isolated from the kidneys of tumor-bearing HHD mice. The tumor-associated stromal antigen (TASA)-derived peptides studied are evolutionarily conserved and could be recognized by CD8+ T cells harvested from the blood of HLA-A2+ normal donors or melanoma patients after in vitro stimulation. These TASA and their derivative peptides may prove useful in vaccine formulations against solid cancers, as well as, in the immune monitoring of HLA-A2+ cancer patients receiving therapeutic interventions, such as IL-12 gene therapy. PMID:21189473

  9. Nitrogen starvation affects bacterial adhesion to soil Adesão de bactérias desnutridas por nitrogênio a solo

    Directory of Open Access Journals (Sweden)

    Maria Tereza Borges

    2008-09-01

    Full Text Available One of the main factors limiting the bioremediation of subsoil environments based on bioaugmentation is the transport of selected microorganisms to the contaminated zones. The characterization of the physiological responses of the inoculated microorganisms to starvation, especially the evaluation of characteristics that affect the adhesion of the cells to soil particles, is fundamental to anticipate the success or failure of bioaugmentation. The objective of this study was to investigate the effect of nitrogen starvation on cell surface hydrophobicity and cell adhesion to soil particles by bacterial strains previously characterized as able to use benzene, toluene or xilenes as carbon and energy sources. The strains LBBMA 18-T (non-identified, Arthrobacter aurescens LBBMA 98, Arthrobacter oxydans LBBMA 201, and Klebsiella sp. LBBMA 204-1 were used in the experiments. Cultivation of the cells in nitrogen-deficient medium caused a significant reduction of the adhesion to soil particles by all the four strains. Nitrogen starvation also reduced significantly the strength of cell adhesion to the soil particles, except for Klebsiella sp. LBBMA 204-1. Two of the four strains showed significant reduction in cell surface hydrophobicity. It is inferred that the efficiency of bacterial transport through soils might be potentially increased by nitrogen starvation.Um dos principais fatores limitantes da biorremediação in situ de solos subterrâneos, baseada na bioaumentação, é o transporte dos microrganismos selecionados até o local contaminado. A caracterização das respostas fisiológicas dos microrganismos introduzidos no subsolo a condições de escassez nutricional, notadamente a avaliação de características que afetam a adesão celular ao solo, é fundamental para se prever o sucesso da bioaumentação. O objetivo deste trabalho foi determinar o efeito da desnutrição em meio com escassez de nitrogênio sobre a hidrofobicidade celular e a

  10. CLONING AND PURIFICATION OFA REPRESSOR PROTEIN FROM ARTHROBACTER NICOTINOVORANS PAO1

    Directory of Open Access Journals (Sweden)

    Marius Mihasan

    2010-09-01

    Full Text Available The pAO1 megaplasmid of A. nicotinovorans consists of 165 ORF's related mainly to nicotine degradation, uptake and utilization of carbohydrates, amino acids and sarcosine The putative sugar catabolic pathway consists of 11 ORFś organized as a single operon and coding for an ABC-type sugar-transport system and several putative oxidoreductases and dehydrogenases. The current work is focused on orf32, a putative PdhR related protein, most probably involved in the control of the whole operon. The approx. 700 kb orf32 gene was cloned in the pH6EX3 plasmid vector and the gene product purified to homogeneity as a 29 kDa His-tagged recombinant protein. As indicated by GPC, it consists of a monomeric protein with a native molecular weight of 32 kDa. The specific UV/Vis spectra showed only a single peak at 280 nm common for all proteins and did not indicated the presence of any colored cofactors. This is in good agreement with the fact that PdhR-family proteins contain a winged helix-turn-helix (wHTH domain responsible for DNA binding, and not a Zn-finger or any other metal containing domains

  11. Effect of Arthrobacter agilis UMCV2 on germination and growth of Pinus devoniana Lindley

    Directory of Open Access Journals (Sweden)

    Wilber Montejo-Mayo

    2016-03-01

    Full Text Available Soil microorganisms are essential for growth, emergence and development in all plants. In our study we decided to evaluate the effect that A. agilis UMCV2 rhizobacteria had on germination and growth of plants of economic-forest interest as P. devoniana to an age of 65 days. Our results show that the UMCV2 bacteria promoted growth of P. devoniana at this early stage of development, further highlighting that despite the short time of interaction between these two, the bacterium was able to increase the rate of germination, increase the size of shoot and generate a proliferation of lateral roots. The data shows a huge potential for using inoculum both in the greenhouse and in open ground and generate a growth promoting species of interest in both agricultural and forest, thereby reducing production periods depending on the crop.

  12. Application of thermoalkalophilic xylanase from Arthrobacter sp. MTCC 5214 in biobleaching of kraft pulp

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, R.; Bhosle, N.B.

    released by enzyme treatment showed a characteristic peak at 280 nm indicating the presence of lignin in the released coloring matter. Enzymatic prebleaching of kraft pulp showed 20 % reduction in kappa number of the pulp without much change in viscosity...

  13. Arthrobacter Species as a Prey Cell Reservoir for Nonobligate Bacterial Predators in Soil

    Science.gov (United States)

    1989-01-01

    species as a prey cell reservoir for nonobligate bacterial predators in soil. Can. J. Microbiol. 35 : 559--564, tine investigation at etc entreprise sur...8217 .Stieprom tice ~s species and Bad//uhs instead of’ A. glohifrbrmis. to provide 1 .0 mng/g soil did not nivoie from the soil did not interfecre because

  14. Exosomes as potent cell-free peptide-based vaccine. II. Exosomes in CpG adjuvants efficiently prime naive Tc1 lymphocytes leading to tumor rejection.

    NARCIS (Netherlands)

    Chaput, N.; Schartz, N.E.; Andre, F.; Taieb, J.; Novault, S.; Bonnaventure, P.; Aubert, N.; Bernard, J.; Lemonnier, F.; Merad, M.; Adema, G.J.; Adams, M.; Ferrantini, M.; Carpentier, A.F.; Escudier, B.; Tursz, T.; Angevin, E.; Zitvogel, L.

    2004-01-01

    Ideal vaccines should be stable, safe, molecularly defined, and out-of-shelf reagents efficient at triggering effector and memory Ag-specific T cell-based immune responses. Dendritic cell-derived exosomes could be considered as novel peptide-based vaccines because exosomes harbor a discrete set of p

  15. Vertical evolution and horizontal transfer of CR1 non-LTR retrotransposons and Tc1/mariner DNA transposons in Lepidoptera species.

    Science.gov (United States)

    Sormacheva, Irina; Smyshlyaev, Georgiy; Mayorov, Vladimir; Blinov, Alexander; Novikov, Anton; Novikova, Olga

    2012-12-01

    Horizontal transfer (HT) is a complex phenomenon usually used as an explanation of phylogenetic inconsistence, which cannot be interpreted in terms of vertical evolution. Most examples of HT of eukaryotic genes involve transposable elements. An intriguing feature of HT is that its frequency differs among transposable elements classes. Although HT is well known for DNA transposons and long terminal repeat (LTR) retrotransposons, non-LTR retrotransposons rarely undergo HT, and their phylogenies are largely congruent to those of their hosts. Previously, we described HT of CR1-like non-LTR retrotransposons between butterflies (Maculinea) and moths (Bombyx), which occurred less than 5 million years ago (Novikova O, Sliwinska E, Fet V, Settele J, Blinov A, Woyciechowski M. 2007. CR1 clade of non-LTR retrotransposons from Maculinea butterflies (Lepidoptera: Lycaenidae): evidence for recent horizontal transmission. BMC Evol Biol. 7:93). In this study, we continued to explore the diversity of CR1 non-LTR retrotransposons among lepidopterans providing additional evidences to support HT hypothesis. We also hypothesized that DNA transposons could be involved in HT of non-LTR retrotransposons. Thus, we performed analysis of one of the groups of DNA transposons, mariner-like DNA elements, as potential vectors for HT of non-LTR retrotransposons. Our results demonstrate multiple HTs between Maculinea and Bombyx genera. Although we did not find strong evidence for our hypothesis of the involvement of DNA transposons in HT of non-LTR retrotransposons, we demonstrated that recurrent and/or simultaneous flow of TEs took place between distantly related moths and butterflies.

  16. Exosomes as potent cell-free peptide-based vaccine. II. Exosomes in CpG adjuvants efficiently prime naive Tc1 lymphocytes leading to tumor rejection.

    Science.gov (United States)

    Chaput, Nathalie; Schartz, Nöel E C; André, Fabrice; Taïeb, Julien; Novault, Sophie; Bonnaventure, Pierre; Aubert, Nathalie; Bernard, Jacky; Lemonnier, François; Merad, Miriam; Adema, Gosse; Adams, Malcolm; Ferrantini, Maria; Carpentier, Antoine F; Escudier, Bernard; Tursz, Thomas; Angevin, Eric; Zitvogel, Laurence

    2004-02-15

    Ideal vaccines should be stable, safe, molecularly defined, and out-of-shelf reagents efficient at triggering effector and memory Ag-specific T cell-based immune responses. Dendritic cell-derived exosomes could be considered as novel peptide-based vaccines because exosomes harbor a discrete set of proteins, bear functional MHC class I and II molecules that can be loaded with synthetic peptides of choice, and are stable reagents that were safely used in pioneering phase I studies. However, we showed in part I that exosomes are efficient to promote primary MHC class I-restricted effector CD8(+) T cell responses only when transferred onto mature DC in vivo. In this work, we bring evidence that among the clinically available reagents, Toll-like receptor 3 and 9 ligands are elective adjuvants capable of triggering efficient MHC-restricted CD8(+) T cell responses when combined to exosomes. Exosome immunogenicity across species allowed to verify the efficacy of good manufactory procedures-manufactured human exosomes admixed with CpG oligonucleotides in prophylactic and therapeutic settings of melanoma in HLA-A2 transgenic mice. CpG adjuvants appear to be ideal adjuvants for exosome-based cancer vaccines.

  17. Phosphate Solubilization Potentials of Rhizosphere Isolates from Central Anatolia (Turkey)

    Science.gov (United States)

    Ogut, M.; Er, F.

    2009-04-01

    Plant available-phosphorus (P) is usually low in Anatolian soils due mainly to the precipitation as calcium (Ca) and magnesium (Mg) phosphates in alkaline conditions. Phosphate solubilizing microorganisms (PSM) can enhance plant P-availability by dissolving the hardly soluble-P within the rhizosphere, which is the zone that surrounds the plant roots. PSM's can be used as seed- or soil-inocula to increase plant P-uptake and the overall growth. A total of 162 PSM's were isolated from the rhizosphere of wheat plants excavated from different fields located along a 75 km part of a highway in Turkey. The mean, the standart deviation, and the median for solubilized-P (ppm) in a 24 h culture in a tricalcium phosphate broth were 681, 427, and 400 for glucose; 358, 266, and 236 for sucrose; and 102, 117, and 50 for starch, respectively. There was not a linear relationship between the phosphate solubilized in the liquid cultures and the solubilization index obtained in the Pikovskaya's agar. Nine isolates representing both weak and strong solubilizers [Bacillus megaterium (5), Bacillus pumilis (1), Pseudomonas syringae pv. phaseolica (1), Pseudomonas fluorescens (1), Arthrobacter aurescens (1) as determined by the 16S rRNA gene sequence analysis] were further studied in a five day incubation. Pseudomonas syringae pv. phaseolica solubilized statistically (P<0.05) higher phosphate (409 ppm) than all the other strains did. There was not a statistically significant (P<0.05) difference in solubilized-P among the Bacillus strains. The pH of the medium fell to the levels between 4 and 5 from the initial neutrality. The phosphate solubilizing strains variably produced gluconic, 2-keto-D-gluconic, glycolic, acetic and butyric acids. The organic acids produced by these microorganisms seem to be the major source of phosphate solubilization in vitro.

  18. Isolation and identification of oil sludge degrading bacteria from production tank Number 9 Masjed Soleiman

    Directory of Open Access Journals (Sweden)

    Yalda Sheyni

    2014-07-01

    Full Text Available   Introduction: “Bioremediation” is one of the most effective methods to remove petroleum contaminants. The aim of the present study is to isolate the indigenous bacteria from the waste petroleum in the Masjed Soleiman No. 9 production tank and to examine the effect of their application on the elimination of petroleum heavy chain hydrocarbons and converting them into light compounds .   Materials and methods: Two percent of petroleum sludge was inoculated to the mineral basal medium and after proliferation of its indigenous bacteria, they were inoculated into the mixture of oil sludge and sand at level of 5%, and the amount of total hydrocarbons and residual oil were measured and compared. The isolates were identified based on biochemical tests and 16S rRNA gene sequencing. Optimization of nitrogen and phosphate sources was done based on growth curves of selected isolates. Gas chromatography was used to determine degradation of sludge hydrocarbons.   Results: In this study, 10 bacterial isolates were isolated from petroleum sludge . Measurement of petroleum total hydrocarbons, using Soxhlet-extraction method, showed that two isolates named MIS1 and MIS2 are able to decompose oil sludge hydrocarbons within 7 days, with the yields of 62% and 72%, respectively. Furthermore, the two isolates reach the end of the logarithmic phase at 48 and 120 hrs, respectively. The best source of nitrogen and phosphate for both isolates was ammonium nitrate and potassium di ­hydrogen phosphate, respectively. The isolates were identified as Arthrobacter aurescens and Pseudomonas aeruginosa , respectively. In gas chromatography analysis it was revealed that Pseudomonas aeruginosa was more potent in degradation of heavy chain hydrocarbons and their conversion to light chain compounds.   Discussion and conclusion: Resident bacteria are present in the oil sludge and are able to degrade the heavy petroleum compounds and convert them into light compounds. These

  19. Experimental evidence of a xylose-catabolic pathway on the pAO1 megaplasmid of Arthrobacter nicotinovorans

    Directory of Open Access Journals (Sweden)

    Marius Mihasan

    2012-09-01

    Full Text Available The pAO1 megaplasmid of A. nicotinovorans consists of 165 ORF's related mainly to nicotine degradation, uptake and utilization of carbohydrates, amino acids and sarcosine. A putative sugar catabolic pathway consisting of 11 ORF's organized as a single operon were previously described. The current work brings experimental data supporting the existence of a D-Xylose catabolic pathway on the pAO1 megaplasmid. When grown on D-xylose containing media, the cells harboring the pAO1 megaplasmid grow to higher cell densities and also express the OxRe protein coded by the megaplasmid. A putative pathway similar to Weimberg pentose pathway is postulated, in which D-xylose is transported in the cell by the ABC-type transport system and then transformed using the putative sugar-dehidrogenase OxRe to D-xylonate, which is further degrated to 2-ketoglutarate and integrated into the general metabolism of the cell

  20. MOLECULAR GENE CLONING OF NICOTINE-DEHIDROGENASE FROM THE pAO1 MEGAPLASMID OF ARTHROBACTER NICOTINOVORANS

    Directory of Open Access Journals (Sweden)

    Andreea Andrei

    2013-10-01

    Full Text Available 6-hydroxi-L-nicotine (6HNic has an important potential as a drug for neuro-degenerative disorders and a  suitable simple and reliable method for obtaining contaminant-free 6HNic preparations is required. Here, we envision the in-vitro production of 6HNic by using purified nicotine-dehydrogenase (NDH followed by HPLC or capillary electrophoresis techniques and we focus on the isolation and cloning of the three genes coding the NDH enzyme.  A PCR protocol was established for easy amplification and the DNA fragment containing the ndhLSM genes was directionally cloned into the pART2 vector.

  1. Purification and characterization of alpha-L-arabinofuranosidase from Arthrobacter sp. MTCC 5214 in solid-state fermentation

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, R.; Numan, M.T.H.; Mukherjee, B.; Satwekar, A.; Bhosle, N.B.

    acetobutylicum [6] and Bacillus pumilus PS213 [16], which were 92, 94 and 60 kDa, respectively. High molecular mass a-L-AFases with multiple subunits isolated from Streptomyces purpurascens [32], Butyrivibrio fibrisolvens GS113 [33] and Thermotoga maritime [39... was not observed with pNPAF tested up to 6.8 mmol l C01 concentration. The efficiency of a-L-AFase (V max /K m ) from Arthro- bacter sp. was less than that shown by the a-L-AFase produced by Bacillus stearothermophilus[9] andB. pumilus PS213[16].However...

  2. 6-hydroxy-L-nicotine from Arthrobacter nicotinovorans sustain spatial memory formation by decreasing brain oxidative stress in rats.

    Science.gov (United States)

    Hritcu, Lucian; Stefan, Marius; Brandsch, Roderich; Mihasan, Marius

    2013-03-01

    Male Wistar rats were subjected to chronic 6-hydroxy-L-nicotine treatment (6HLN, 0.3 mg/kg, i.p., seven consecutive days) and their memory performance was studied by means of Y-maze and radial arm-maze tasks. 6HLN significantly increased spontaneous alternations in Y-maze task and working memory in radial arm-maze task, suggesting effects on short-term memory, without affecting long-term memory, explored by reference memory in radial arm-maze task. In addition, 6HLN increased antioxidant enzymes activity and decreased production of lipid peroxidation, suggesting antioxidant effects. Also, the linear regression between behavioral measures and oxidative stress markers resulted in significant correlations. Therefore, positive effects of 6HLN on spatial memory may occur by antioxidant actions.

  3. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    Energy Technology Data Exchange (ETDEWEB)

    Daly, Michael J.

    2007-07-23

    Progress is briefly summarized in these areas: ionizing radiation resistance in bacteria; a hypothesis regarding ionizing radiation resistance emerging for bacterial cells; transcriptome analysis of irradiated D. radiodurans and Shewanella oneidensis; the role of metal reduction in Mn-dependnet Deinococcal species; and engineered Deinococcus strains as models for bioremediation. Key findings are also reported regarding protein oxidation as a possible key to bacterial desiccation resistance, and the whole-genome sequence of the thermophile Deinococcus geothermalis.

  4. Sabethes (Peytonulus luxodens, a New Species of Sabethini (Diptera: Culicidae from Ecuador

    Directory of Open Access Journals (Sweden)

    Hall Clinton R

    1999-01-01

    Full Text Available The adult male, larva and pupa of Sabethes (Peytonulus luxodens, a new species from Ecuador, are described. The species is distinguished from Sabethes aurescens (Lutz, which it closely resembles in all life stages

  5. Basic quality criteria for road lighting : contribution to joint Meeting I of TC-1.6, 3.1, 4.6, and 4.7 on 19th Session of the C.I.E., Kyoto, 1979.

    NARCIS (Netherlands)

    Schreuder, D.A.

    1979-01-01

    In conclusion, it can be stated that for the future the approach of the Visual Performance Committee will be essential for road lighting questions; at present, however, the applicability of the results of that group are very limited. Furthermore, provided the methods are drastically improved, confli

  6. 铅胁迫对节杆菌(Arthrobacter sp.)和芽孢杆菌(Bacillus sp.)生理生化特性的影响%Impacts of Pb (Ⅱ) on the physio-biochemical features of Arthrobacter sp.and Bacillus sp.

    Institute of Scientific and Technical Information of China (English)

    杜瑞英; 黄文芳; 赵沛华; 赵迪; 文典

    2016-01-01

    将节杆菌和芽孢杆菌分别暴露于不同浓度的铅溶液中,并进行不同暴露时间的急性毒性试验.结果表明,500 mg/kg的Pb(Ⅱ)处理会使节杆菌中的细胞膜脂质过氧化产物——硫代巴比妥酸活性物质(TBARS)浓度显著降低(p<0.05),而Pb(Ⅱ)质量比变化对其他指标无显著影响(p<0.05);铅处理会使芽孢杆菌中可溶性蛋白质量浓度、GSH质量浓度和超氧化物歧化酶(SOD)活性显著升高,而过氧化氢酶(CAT)活性显著降低(p<0.05).节杆菌的可溶性糖质量浓度、GSH质量浓度、SOD活性和TBARS浓度随暴露时间延长而显著增加;芽孢杆菌的可溶性糖质量浓度、GSH质量浓度和SOD活性随暴露时间延长而显著增加,TBARS浓度随暴露时间延长呈先增后减的变化趋势,CAT活性也表现出先增后降的变化趋势.铅处理对节杆菌和芽孢杆菌具有一定的胁迫作用,两种菌通过启动不同的抗性系统来抵抗外界胁迫.

  7. Detection & Analysis of Atrazine-degrading Genes of Micrococcus luteus AD3%藤黄微球菌AD3的阿特拉津降解基因检测与分析

    Institute of Scientific and Technical Information of China (English)

    徐胜文; 郭玉华; 王松文; 李颖; 蔡宝立

    2007-01-01

    为了获得高效稳定的阿特拉津基因,分离出更多的阿特拉津降解菌,试验采用PCR基因扩增和氮源利用方法,对AD3菌株的阿特拉津降解基因进行了检测和测序,并与其他菌株阿特拉津降解基因的序列进行了比较.结果表明:Micrococcus luteus AD3菌株含有阿特拉津降解基因trzN,atzB,atzC和atzDEF.其中trzN基因中心区的序列与Arthrobacter sp.TC1的trzN完全相同,atzB和atzC基因中心区的序列与Pseudomonas sp.ADP的atzB和atzC完全相同.AD3菌株能以氰脲酸为唯一氮源生长,Micrococcusluteus AD3菌株能将阿特拉津彻底降解成CO2和NH3.

  8. Research on Application of 3D Laser-rapid Prototyping of TC1 1 Titanium Alloy Blisc%TC 11钛合金整体叶盘应用3 D激光快速成形技术研究

    Institute of Scientific and Technical Information of China (English)

    吕日红; 樊国福; 夏峥嵘; 胡林荣; 章丽

    2014-01-01

    3D laser-rapid prototyping is an advanced manufacturing technology both of high-performance material crea-ting and complex parts near net shaping.The paper introduced the research about the mechanical property,metallographic property,nondestructive testing,cutter design,blades deformation controlling,as well as the online inspection of a turbo-fan engine fourth-fan blisc which was made of TC11 by 3D laser-rapid prototyping.%3D激光快速成形技术是一种高性能材料制备与复杂零件直接近净成形一体化的先进制造技术。本文介绍了采用3 D激光快速成形技术研制的某型涡扇发动机TC11钛合金四级风扇整体叶盘的性能和组织,以及零件在加工过程中的无损检测、刀具结构设计、叶片变形控制技术和在线检测技术等的研究情况。

  9. Effects of Environmental Factors on Atrazine Degradation by Arthrobacter sp.Ha1%环境因素对节杆菌株Ha1降解阿特拉津效果的影响

    Institute of Scientific and Technical Information of China (English)

    魏晓爱; 赵清泉; 周博如

    2014-01-01

    [目的]明确菌株Ha1降解阿特拉津(AT)的最适环境因素.[方法]采用液相色谱法测定降解体系中阿特拉津的残留量.[结果]K+和Mg2+对菌株Ha1降解阿特拉津有促进作用,Cu2、cd2+等离子则抑制其降解功能的发挥;溶液的缓冲性、pH、温度、供氧方式、反应体系、菌株的浓度和氰尿酸(CA)对菌株Ha1降解阿特拉津有影响.[结论]该研究结果为生物修复被阿特拉津污染的水环境奠定了理论基础.

  10. Characterization of three antifungal calcite-forming bacteria, Arthrobacter nicotianae KNUC2100, Bacillus thuringiensis KNUC2103, and Stenotrophomonas maltophilia KNUC2106, derived from the Korean islands, Dokdo and their application on mortar.

    Science.gov (United States)

    Park, Jong-Myong; Park, Sung-Jin; Ghim, Sa-Youl

    2013-09-28

    Crack remediation on the surface of cement mortar using microbiological calcium carbonate (CaCO3) precipitation (MICP) has been investigated as a microbial sealing agent on construction materials. However, MICP research has never acknowledged the antifungal properties of calcite-forming bacteria (CFB). Since fungal colonization on concrete surfaces can trigger biodeterioration processes, fungi on concrete buildings have to be prevented. Therefore, to develop a microbial sealing agent that has antifungal properties to remediate cement cracks without deteriorative fungal colonization, we introduced an antifungal CFB isolated from oceanic islands (Dokdo islands, territory of South Korea, located at the edge of the East Sea in Korea.). The isolation of CFB was done using B4 or urea-CaCl2 media. Furthermore, antifungal assays were done using the pairing culture and disk diffusion methods. Five isolated CFB showed CaCO3 precipitation and antifungal activities against deteriorative fungal strains. Subsequently, five candidate bacteria were identified using 16S rDNA sequence analysis. Crack remediation, fungi growth inhibition, and water permeability reduction of antifungal CFB-treated cement surfaces were tested. All antifungal CFB showed crack remediation abilities, but only three strains (KNUC2100, 2103, and 2106) reduced the water permeability. Furthermore, these three strains showed fungi growth inhibition. This paper is the first application research of CFB that have antifungal activity, for an eco-friendly improvement of construction materials.

  11. NCBI nr-aa BLAST: CBRC-LAFR-01-1781 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-LAFR-01-1781 ref|YP_833238.1| hypothetical protein Arth_3763 [Arthrobacter sp.... FB24] gb|ABK05138.1| hypothetical protein Arth_3763 [Arthrobacter sp. FB24] YP_833238.1 3.3 25% ...

  12. NCBI nr-aa BLAST: CBRC-LAFR-01-0212 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-LAFR-01-0212 ref|YP_833238.1| hypothetical protein Arth_3763 [Arthrobacter sp.... FB24] gb|ABK05138.1| hypothetical protein Arth_3763 [Arthrobacter sp. FB24] YP_833238.1 0.48 31% ...

  13. NCBI nr-aa BLAST: CBRC-RMAC-14-0300 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RMAC-14-0300 ref|YP_832933.1| hypothetical protein Arth_3458 [Arthrobacter sp.... FB24] gb|ABK04833.1| hypothetical protein Arth_3458 [Arthrobacter sp. FB24] YP_832933.1 0.38 24% ...

  14. Diversity of l-Ieucine catabolism in various microorganisms involved in dairy fermentations, and identification on the rate-controlling step in the formation of the potent flavour component 3-methylbutanal.

    NARCIS (Netherlands)

    Smit, B.A.; Engels, W.J.M.; Wouters, J.T.M.; Smit, G.

    2004-01-01

    Various microorganisms, belonging to the genera Lactococcus, Lactobacillus, Streptococcus, Leuconostoc, Bifidobacterium, Propionibacterium, Brevibacterium, Corynebacterium and Arthrobacter, used in dairy fermentations such as cheese making, were analysed for their potential to convert leucine into f

  15. [A model study of pesticide biodegradation in soil].

    Science.gov (United States)

    Bieganska, J

    2007-01-01

    This study addresses the efficiency of microbial preparations to degrade pesticide residues in soil. A method to degrade pesticides DNOC and pendimethalin using Pseudomonas and Arthrobacter bacteria with a fertilizer is described.

  16. Culicideofauna (Diptera encontrada em entrenós de taquara de uma mata residual na área urbana de Londrina, Paraná, Brasil Fauna of Culicidae (Diptera found in the internodes of the bamboo in a residual forest in the urban area of Londrina - Paraná, Brazil

    Directory of Open Access Journals (Sweden)

    João Antonio Cyrino Zequi

    2001-06-01

    Full Text Available A fragment of a forest, located in the urban area of Londrina, Paraná, Brazil, was chosen to represent the area for this study. Many Merostachys Spreng, 1824 bamboo, which were naturally perforated and, therefore, ready to retain water, were found in the interior of this forest. Bamboo were collected every fifteen days during field actions. They were then measured and cut meter by meter before their contents were analyzed in the laboratory. A total of 542 specimens from the following species were collected during one year: Sabethes aurescens (Lutz, 1905, Sabethes melanomymphe Dyar, 1924, Sabethes identicus Dyar & Knab, 1907, Wyeomyia rooti (Del Ponte, 1939, Wyeomyia limai Lane & Cerqueira, 1942, Wyeomyia sp., Trichoprosopon pallidiventer (Lutz, 1905, Trichoprosopon humboldti Lane & Cerqueira, 1942, Toxorhynchites sp. e Shannoniana schedocyclium (Dyar & Knab, 1908. Wyeomyia limai and Sabethes aurescens were the most frequently found species. The first specie had the highest population index in february whereas the Sabethes aurescens, had its highest index in july, february and november. The largest number of larvae were obtained in the months of february and march. As for stratification, the greatest quantity of larvae was found at two meters. The specie Wyeomyia limai predominated in all heights, being most abundant at three meters high whereas the Sabethes was most abundant at one meter high. The presence of bamboo in small forest spots in urban areas is enough to host a certain variety of Culicidae of the Sabethini tribe which are considered wild mosquito. These same mosquito, due to their hematophagus habitat, can be hazardous to public health.

  17. 裸子植物核DNA含量研究进展%Research Progress on Nuclear DNA Amounts in Gymnosperms

    Institute of Scientific and Technical Information of China (English)

    周香艳; 马静芳; 王旺田

    2009-01-01

    共收集了217个裸子植物种的核DNA C-值,占裸子植物总种数(约730种)的29.73%,且涵盖了裸子植物所有科,为便于检索,以字母为序列成一表.目前为止,裸子植物所有科(17科)均有已被测定核DNA含量的代表种,且基因组大小范围也有所扩大.裸子植物核DNA含量存在68.5倍的差异,核DNA含量最大的为西藏白皮松(Pinus gerardiana),值为75.36 pg/2C,而最小的P. aurescens,核DNA含量仅为1.10 pg/2C.

  18. Novas ocorrências de hepáticas (Marchantiophyta para o estado da Bahia, Brasil New records of liverworts (Marchantiophyta from Bahia State, Brazil

    Directory of Open Access Journals (Sweden)

    Emilia de Brito Valente

    2006-03-01

    Full Text Available Na Serra da Jibóia, foram registradas 13 espécies de novas ocorrências, sendo oito para a região Nordeste: Bazzania aurescens Spruce, Calypogeia peruviana Nees & Mont., Cephalozia crassifolia (Lindenb. & Gottsche Fulford, Lepidozia cupressina (Sw. Lindenb., Pallavicinia lyellii (Hook. S.F. Gray, Plagiochilla diversifolia Lindenb. & Gottsche, Radula kegelli Gottsche ex Steph. e Riccardia fucoidea (Sw. Schiffin., e cinco espécies referidas pela primeira vez para o Estado: Metzgeria albinea Spruce, Plagiochila gymnocalycina (Lehm. & Lindenb. Mont., P. simplex (Sw. Lindenb., Riccardia amazonica (Spruce S.W. Arnell e Symphyogyna aspera Steph. Para cada espécie são fornecidos comentários taxonômicos, ecológicos e distribuição geográfica mundial e no Brasil, além de indicação de literatura contendo descrição e ilustração. Foram realizadas ilustrações para algumas espécies.In Serra da Jibóia were recorded 13 species of new ocurrence wich are eight species from region Northeastern: Bazzania aurescens Spruce, Calypogeia peruviana Nees & Mont., Cephalozia crassifolia (Lindenb. & Gottsche Fulford, Lepidozia cupressina (Sw. Lindenb., Pallavicinia lyellii (Hook. S.F. Gray, Plagiochilla diversifolia Lindenb. & Gottsche, Radula kegelli Gottsche ex Steph. and Riccardia fucoidea (Sw. Schiffin., and five are recorded for the first time from Bahia, State: Metzgeria albinea Spruce, Plagiochila gymnocalycina (Lehm. & Lindenb. Mont., P. simplex (Sw. Lindenb., Riccardia amazonica (Spruce S.W. Arnell and Symphyogyna aspera Steph. from Bahia, State. For each specie are provided taxonomics and ecological comments, geographical general and in Brazil distribution, and indication of literature with description and ilustration. Some species were ilustrated.

  19. Dicty_cDB: Contig-U11162-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 86_1( AF063186 |pid:none) Arthrobacter paraffineus DNA polym... 122 3e-26 EF106972_80( EF106972 |pid:none) Uncultured marine Nitrospi...naceae ... 122 3e-26 CP000474_1976( CP000474 |pid:none)

  20. Dicty_cDB: Contig-U09515-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 0.009 AF322256_16( AF322256 |pid:none) Streptomyces antibioticus simocyc... 44 0.009 CR931997_1456( CR931997...e) Arthrobacter chlorophenolicus A6... 42 0.044 AF324838_18( AF324838 |pid:none) Streptomyces antibioticus simo

  1. Dicty_cDB: Contig-U15862-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available ohexanone... 212 6e-53 AY083902_1( AY083902 |pid:none) Atriplex prostrata betaine a...de dehydrogenase 5, mitochondrial; ... 212 6e-53 AY123972_4( AY123972 |pid:none) Arthrobacter sp. BP2 cycl

  2. Dicty_cDB: Contig-U03697-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available ( CP000975 |pid:none) Methylacidiphilum infernorum V4... 51 2e-05 CP000454_1226( CP000454 |pid:none) Arthrob...acter sp. FB24, complete... 47 4e-04 CP000975_358( CP000975 |pid:none) Methylacidiphilum infernorum V4,... 4

  3. Dicty_cDB: SFJ819 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 341 |pid:none) Arthrobacter chlorophenolicus A... 53 6e-06 CP000975_1471( CP000975 |pid:none) Methylacidiphilum inferno... FB24, complete... 47 4e-04 CP000975_358( CP000975 |pid:none) Methylacidiphilum infernorum V4,... 46 7e-04 (

  4. {sup 99m}Tc-labeled-1-thio-{beta}-D-glucose as a new tool to temporomandibular joint inflammatory disorders diagnosis

    Energy Technology Data Exchange (ETDEWEB)

    Borges Brasileiro, Claudia, E-mail: cbbrasileiro@gmail.co [Departamento de Engenharia Nuclear-PCA, Escola de Engenharia, Universidade Federal de Minas Gerais (UFMG)-Avenida Presidente Antonio Carlos, 6627, CEP: 31270-100 Belo Horizonte, MG (Brazil); Fonseca Pacheco, Cinthia Mara da, E-mail: cinthia@newtonpaiva.b [Faculdade de Ciencias Biologicas e da Saude, Centro Universitario Newton Paiva-Avenida Silva Lobo, 1730, Belo Horizonte, MG (Brazil); Martins Queiroz-Junior, Celso, E-mail: cmqj@yahoo.com.b [Departamento de Clinica, Patologia e Cirurgia Odontologica, Faculdade de Odontologia, Universidade Federal de Minas Gerais (UFMG)-Avenida Presidente Antonio Carlos, 6627, Belo Horizonte, MG (Brazil); Flavia de Lima, Carla, E-mail: carla.flavia@terra.com.b [Nucleo de Diagnostico Cardiovascular (ECOGRAF)-Rua dos Otoni, 881, Belo Horizonte, MG (Brazil); Batista da Silva, Juliana, E-mail: silvajb@cdtn.b [Unidade de Pesquisa e Producao de Radiofarmacos, Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN)-Avenida Presidente Antonio Carlos, 6627, Belo Horizonte, MG (Brazil); Passos Ribeiro de Campos, Tarcisio, E-mail: campos@nuclear.ufmb.b [Departamento de Engenharia Nuclear-PCA, Escola de Engenharia, Universidade Federal de Minas Gerais (UFMG)-Avenida Presidente Antonio Carlos, 6627, CEP: 31270-100 Belo Horizonte, MG (Brazil)

    2010-12-15

    Aim: The aim of this study was to evaluate early detection of temporomandibular joint (TMJ) inflammatory changes based on 1-thio-{beta}-D-glucose radiolabeled with technetium-99m. Method: The method applied a TMJ inflammation model in rats followed by radiopharmaceutical synthesis, intravenous administration of {sup 99m}Tc-1-TG and kinetic scintigraphy imaging. Results: Results show a significant difference of {sup 99m}Tc-1-TG uptake between inflamed TMJ and the control joint. The biodistribution of {sup 99m}Tc-1-TG by images showed the kidneys' excretion. Conclusion: As conclusion, {sup 99m}Tc-1-TG is a helpful tool in TMJ inflammatory process detection.

  5. Simultaneous Double Star and Cluster FTEs observations on the dawnside flank of the magnetosphere

    Directory of Open Access Journals (Sweden)

    A. Marchaudon

    2005-11-01

    Full Text Available We present Cluster and Double Star-1 (TC-1 observations from a close magnetic conjunction on 8 May 2004. The five spacecraft were on the dawnside flank of the magnetosphere, with TC-1 located near the equatorial plane and Cluster at higher geographic latitudes in the Southern Hemisphere. TC-1, at its apogee, skimmed the magnetopause for almost 8h (between 08:00-16:00 UT. Flux Transfer Events (FTEs, moving southward/tailward from the reconnection site, were observed by TC-1 throughout almost all of the period. Cluster, travelling on a mainly dawn-dusk trajectory, crossed the magnetopause at around 10:30 UT in the same Magnetic Local Time (MLT sector as TC-1 and remained close to the magnetopause boundary layer in the Southern Hemisphere. The four Cluster spacecraft observed FTEs for a period of 6.5h between 07:30 and 14:00 UT.

    The very clear signatures and the finite transverse sizes of the FTEs observed by TC-1 and Cluster imply that, during this event, sporadic reconnection occurred. From the properties of these FTEs, the reconnection site was located northward of both TC-1 and Cluster on the dawn flank of the magnetosphere. Reconnection occurred between draped magnetosheath and closed magnetospheric field lines. Despite variable interplanetary magnetic field (IMF conditions and IMF-Bz turnings, the IMF clock angle remained greater than 70° and the location site appeared to remain relatively stable in position during the whole period. This result is in agreement with previous studies which reported that the dayside reconnection remained active for an IMF clock angle greater than 70°. The simultaneous observation of FTEs at both Cluster and TC-1, separated by 2h in MLT, implies that the reconnection site on the magnetopause must have been extended over several hours in MLT.

  6. Coordinated Cluster/Double Star observations of dayside reconnection signatures

    Directory of Open Access Journals (Sweden)

    M. W. Dunlop

    2005-11-01

    Full Text Available The recent launch of the equatorial spacecraft of the Double Star mission, TC-1, has provided an unprecedented opportunity to monitor the southern hemisphere dayside magnetopause boundary layer in conjunction with northern hemisphere observations by the quartet of Cluster spacecraft. We present first results of one such situation where, on 6 April 2004, both Cluster and the Double Star TC-1 spacecraft were on outbound transits through the dawnside magnetosphere. The observations are consistent with ongoing reconnection on the dayside magnetopause, resulting in a series of flux transfer events (FTEs seen both at Cluster and TC-1, which appear to lie north and south of the reconnection line, respectively. In fact, the observed polarity and motion of each FTE signature advocates the existence of an active reconnection region consistently located between the positions of Cluster and TC-1, with Cluster observing northward moving FTEs with +/- polarity, whereas TC-1 sees -/+ polarity FTEs. This assertion is further supported by the application of a model designed to track flux tube motion for the prevailing interplanetary conditions. The results from this model show, in addition, that the low-latitude FTE dynamics are sensitive to changes in convected upstream conditions. In particular, changing the interplanetary magnetic field (IMF clock angle in the model suggests that TC-1 should miss the resulting FTEs more often than Cluster and this is borne out by the observations.

  7. The bacterial diversity in the Mogao Grottoes, Dunhuang, China%敦煌莫高窟中细菌多样性的研究

    Institute of Scientific and Technical Information of China (English)

    张昺林; 唐德平; 张楠; 王婉如; 张东明; 武发思; 薛林贵

    2012-01-01

    [目的]通过对敦煌莫高窟内细菌多样性及生理生化特征的分析,为壁画微生物病害防治提供试验依据.[方法]采用纯培养与16S rDNA等技术对莫高窟245#窟内空气样品、壁画样品进行分析,并在培养基中添加壁画颜料测试其对细菌生长的影响.[结果]分离出可培养细菌76株,分属于8个属.其中空气中有6个属,分别为Bacillus、Arthrobacter、Pseudomonas、Acinetobacter、Enterobacter、Kocuria,优势菌为Bacillus、Arthrobacter.壁画上有Bacillus、Arthrobacter、Paenibacillus、Erythrobacter 4个属,优势菌为Bacillus、Arthrobacter;并发现DHXJ05 (Enterobacteriaceae)、DHXJ08 (Bacillaceae)、DHXJ15 (Erythrobacteraceae)、DHXJ16 (Bacillaceae)和DHXJ17 (Bacillaceae)能在含有铁红、铅丹、朱砂的环境中良好生长.[结论]为后期研究壁画颜料的变色机理及选择相应的细菌防治制剂提供了条件.%[Objective] Analyzing the bacterial diversity, physiological and biochemical characteristics in the mogao grottoes can provide an experimental basis for microbial disease prevention and treatment of Mogao murals. [Methods] Both the air and mural samples collected from Mogao Grottoes 245# are analyzed by means of pure culture techniques, and testing effect of mural paint on bacterial growth. [Results] 76 bacteria belonging to eight different genera are identified and characterized. Six genera are revived form the air, they are Bacillus, Ar-throbacter, Pseudomonas, Acinetobacter, Enterobacter, Kocuria, Among them, Bacillus and Arthrobacter are dominant. Four genera are revived from the mural, they are Bacillus, Ar-throbacter, Paenibacillus, Erythrobacter, among them, Bacillus and Arthrobacter are dominant; and it is found that some bacteria, such as DHXJ05 (Enterobacteriaceae), DHXJ08 (Bacillaceae), DHXJ15 (Erythrobacteraceae), DHXJ16 (Bacillaceae) and DHXJ17 (Bacilla-ceae) can grow well in environment containing red ferric oxide, red lead, and cinnabar

  8. Ecological Interactions Between Metals and Microbes

    Energy Technology Data Exchange (ETDEWEB)

    Konopka, Allan E.

    2004-06-01

    Analyses of chromium resistant microbes. Culturable xylene-degrading and chromate-resistant microbes were obtained from chronically cocontaminated soil using a microcosm enrichment technique, and shown to correlate to dominant soil populations using culture independent techniques. The soil microbial community proved able to mount a respiratory response to addition of xylene in the presence of chromate. The majority of isolates belonged to the ubiquitous but poorly studied high %G+C Gram positive genus Arthrobacter, and exhibited considerable genotypic and phenotypic variability. Phenotypic assays uncovered a wide variation in the levels of chromate resistance, even between very closely related strains. Primers designed against conserved motifs in the known chrA chromate efflux gene failed to detect similar sequences among the chromate resistant Arthrobacter isolates obtained through enrichment.

  9. Metabolism of nitrate esters by a consortium of two bacteria.

    Science.gov (United States)

    Ramos, J L; Haïdour, A; Duque, E; Piñar, G; Calvo, V; Oliva, J M

    1996-03-01

    The products of condensation of organic alcohols and nitric acid are nitrate esters with the general structure C-O-NO2. These products are widely employed as vasodilators and explosives, and are true xenobiotic compounds, as they do not occur in nature. We have isolated and characterized a consortium of two microorganisms, Arthrobacter ilicis and Agrobacterium radiobacter, that mineralized recalcitrant ethylene glycol dinitrate. The Arthrobacter strain was the actual degrading microorganism, although the second microbe facilitated mineralization. The biodegradation of ethylene glycol dinitrate by A. ilicis involved the progressive elimination of the nitro groups from the organic molecule to generate ethylene glycol, which was then mineralized. Waters polluted with ethylene glycol dinitrate have been shown amenable to biological treatment in a pilot plant with wastewaters generated during the synthesis of the chemical in a factory.

  10. Evaluating the biological activity of oil-polluted soils using a complex index

    Science.gov (United States)

    Kabirov, R. R.; Kireeva, N. A.; Kabirov, T. R.; Dubovik, I. Ye.; Yakupova, A. B.; Safiullina, L. M.

    2012-02-01

    A complex index characterizing the biological activity of soils (BAS) is suggested. It is based on an estimate of the level of activity of catalase; the number of heterotrophic and hydrocarbon oxidizing microorganisms, microscopic fungi, algae, and cyanobacteria; and the degree of development of higher plants and insects in the studied soil. The data on using the BAS coefficient for evaluating the efficiency of rehabilitation measures for oil-polluted soils are given. Such measures included introducing the following biological preparations: Lenoil based on a natural consortium of microorganisms Bacillus brevis and Arthrobacter sp.; the Azolen biofertilizer with complex action based on Azotobacter vinelandii; the Belvitamil biopreparation, which is the active silt of pulp and paper production; and a ready-mixed industrial association of aerobic and anaerobic microorganisms that contains hydrocarbon oxidizing microorganisms of the Arthrobacter, Bacillus, Candida, Desulfovibrio, and Pseudomonas genera.

  11. Amine-synthesizing enzyme N-substituted formamide deformylase: Screening, purification, characterization, and gene cloning

    OpenAIRE

    Fukatsu, Hiroshi; Hashimoto, Yoshiteru; Goda, Masahiko; Higashibata, Hiroki; Kobayashi, Michihiko

    2004-01-01

    N-substituted formamide was produced through the hydration of an isonitrile by isonitrile hydratase in the isonitrile metabolism. The former compound was further degraded by a microorganism, strain F164, which was isolated from soil through an acclimatization culture. The N-substituted formamide-degrading microorganism was identified as Arthrobacter pascens. The microbial degradation was found to proceed through an enzymatic reaction, the N-substituted formamide being hydrolyzed to yield the ...

  12. Salimabromide: unexpected chemistry from the obligate marine myxobacterium Enhygromxya salina.

    Science.gov (United States)

    Felder, Stephan; Dreisigacker, Sandra; Kehraus, Stefan; Neu, Edith; Bierbaum, Gabriele; Wright, Patrick R; Menche, Dirk; Schäberle, Till F; König, Gabriele M

    2013-07-08

    Marine myxobacteria (Enhygromyxa, Plesiocystis, Pseudoenhygromyxa, Haliangium) are phylogenetically distant from their terrestrial counterparts. Salimabromide is the first natural product from the Plesiocystis/Enhygromyxa clade of obligatory marine myxobacteria. Salimabromide has a new tetracyclic carbon skeleton, comprising a brominated benzene ring, a furano lactone residue, and a cyclohexane ring, bridged by a seven-membered cyclic moiety. The absolute configuration was deduced from experimental and calculated CD data. Salimabromide revealed antibiotic activity towards Arthrobacter cristallopoietes.

  13. Isolation, Characterization and Identification of Thiram-degrading Microorganisms from Soil Enrichment Cultures

    OpenAIRE

    ŞAHİN, Nurettin

    2000-01-01

    Mixed microbial cultures were obtained by enrichment from soil samples collected from the Gediz basin. A number of species of bacteria and fungi were isolated and partially characterized from enrichment clutures containing the fungicide thiram. According to their responses in morphological and biochemical tests fungi were identified as Aspergillus niger, A. flavus and Penicilium steckii. Bacterial isolates were assigned to the genera: Bacillus, Arthrobacter, Moraxella-like Acinetobacter a...

  14. Development of (99m)Tc-Labeled Pyridyl Benzofuran Derivatives To Detect Pancreatic Amylin in Islet Amyloid Model Mice.

    Science.gov (United States)

    Yoshimura, Masashi; Ono, Masahiro; Watanabe, Hiroyuki; Kimura, Hiroyuki; Saji, Hideo

    2016-06-15

    While islet amyloid deposition comprising amylin is one of pathological hallmarks of type 2 diabetes mellitus (T2DM), no useful amylin-imaging probe has been reported. In this study, we evaluated two (99m)Tc-labeled pyridyl benzofuran derivatives as novel amylin-imaging probes using the newly established islet amyloid model mouse. Binding experiments in vitro demonstrated that [(99m)Tc]1 displayed a higher affinity for amylin aggregates than [(99m)Tc]2. Autoradiographic studies using human pancreas sections with T2DM revealed that [(99m)Tc]1 clearly labeled islet amyloid in T2DM pancreatic sections, while [(99m)Tc]2 did not. Although the initial uptake of [(99m)Tc]1 by the normal mouse pancreas was low (0.74%ID/g at 2 min post-injection), [(99m)Tc]1 showed higher retention in the model mouse pancreas than that of the normal mouse, and exhibited strong binding to amylin aggregates in the living pancreas of the model mice. These results suggest that [(99m)Tc]1 is a potential imaging probe targeting islet amyloids in the T2DM pancreas.

  15. Simazine degradation in bioaugmented soil: urea impact and response of ammonia-oxidizing bacteria and other soil bacterial communities.

    Science.gov (United States)

    Guo, Qingwei; Wan, Rui; Xie, Shuguang

    2014-01-01

    The objective of this study was to investigate the impact of exogenous urea nitrogen on ammonia-oxidizing bacteria (AOB) and other soil bacterial communities in soil bioaugmented for simazine remediation. The previously isolated simazine-degrading Arthrobacter sp. strain SD1 was used to degrade the herbicide. The effect of urea on the simazine degradation capacity of the soil bioaugmented with Arthrobacter strain SD1 was assessed using quantitative PCR targeting the s-triazine-degrading trzN and atzC genes. Structures of bacterial and AOB communities were characterized using terminal restriction fragment length polymorphism. Urea fertilizer could affect simazine biodegradation and decreased the proportion of its trzN and atzC genes in soil augmented with Arthrobacter strain SD1. Bioaugmentation process could significantly alter the structures of both bacterial and AOB communities, which were strongly affected by urea amendment, depending on the dosage. This study could provide some new insights towards s-triazine bioremediation and microbial ecology in a bioaugmented system. However, further studies are necessary in order to elucidate the impact of different types and levels of nitrogen sources on s-triazine-degraders and bacterial and AOB communities in bioaugmented soil.

  16. Diversity, metal resistance and uranium sequestration abilities of bacteria from uranium ore deposit in deep earth stratum.

    Science.gov (United States)

    Islam, Ekramul; Sar, Pinaki

    2016-05-01

    Metal resistance and uranium (U) sequestration abilities of bacteria residing in subsurface U ore was investigated using 122 pure culture strains isolated through enrichment. The cumulative frequencies of isolates resistant to each metal tested were as follows: As(V), 74%; Zn, 58%; Ni, 53%; Cd, 47%; Cr(VI), 41%; Co, 40%; Cu, 20%; and Hg, 4%. 16S rRNA gene analysis revealed that isolated bacteria belonged to 14 genera with abundance of Arthrobacter, Microbacterium, Acinetobacter and Stenotrophomonas. Cobalt did not interfere with the growth of most of the bacterial isolates belonging to different groups while U allowed growth of four different genera of which Stenotrophomonas and Microbacterium showed high U tolerance. Interestingly, tolerance to Ni, Zn, Cu, and Hg was observed only in Microbacterium, Arthrobacter, Paenibacillus¸ and Acinetobacter, respectively. However, Microbacterium was found to be dominant when isolated from other five different metal enrichments including U. Uranium removal study showed that 84% of the test bacteria could remove more than 50mgUg(-1) dry weight from 80 or 160mgL(-1) U within 48h. In general, Microbacterium, Arthrobacter and Acinetobacter could remove a higher amount of U. High resolution transmission electron microscopy (HRTEM) study of U exposed cells revealed that accumulated U sequestered mostly around the cell periphery. The study highlights that indigenous U ore deposit bacteria have the potential to interact with U, and thus could be applied for bioremediation of U contaminated sites or wastes.

  17. Isolation and characterization of organic-sulfur degradation bacterial strain

    Institute of Scientific and Technical Information of China (English)

    YANG Yu; DIAO Meng-xue; SHI Wu-yang; LI Li; DAI Qin-yun; QIU Guan-zhou

    2007-01-01

    A bacterial strain that was capable of degrading organic sulfur (dibenzothiophene) was isolated by enrichment techniques from the petroleum-contaminated soil collected from Zhongyuan Oil Field. The strain is named ZYX and is gram-positive.This strain undergoes bacilus-coccus morphological change, and forms yellow-pigment glossy circular colonies with 1.5 mm in diameter on average after 2 d incubation on Luria-Bertani(LB) plates. The full-length of 16S rDNA sequence of strain ZYX was determined and analyzed. Strain ZYX is found most relative with the genus of Arthrobacter. The similarity values between ZYX and Arthrobacter sp. P2 is 99.53%. The main morphological, biochemical and physiological features of strain ZYX accord with those of Arthrobacter. It is found that the optimal initial pH for growth is about 7.0, and the optimal concentration of dibenzothiophene(DBT)for growth is 0.10 g/L. Additionally, the results show that the best carbon source and nitrogen source are glycerol and glutamine,respectively.

  18. Biodegradation and bioremediation of endosulfan contaminated soil.

    Science.gov (United States)

    Kumar, Mohit; Lakshmi, C Vidya; Khanna, Sunil

    2008-05-01

    Among the three mixed bacterial culture AE, BE, and CE, developed by enrichment technique with endosulfan as sole carbon source, consortium CE was found to be the most efficient with 72% and 87% degradation of alpha-endosulfan and beta-endosulfan, respectively, in 20 days. In soil microcosm, consortium AE, BE and CE degraded alpha-endosulfan by 57%, 88% and 91%, respectively, whereas beta-endosulfan was degraded by 4%, 60% and 67% after 30 days. Ochrobacterum sp., Arthrobacter sp., and Burkholderia sp., isolated and identified on the basis of 16s rDNA gene sequence, individually showed in situ biodegradation of alpha-endosulfan in contaminated soil microcosm by 61, 73, and 74, respectively, whereas degradation of beta-endosulfan was 63, 75, and 62, respectively, after 6 weeks of incubation over the control which showed 26% and 23 % degradation of alpha-endosulfan and beta-endosulfan, respectively. Population survival of Ochrobacterum sp., Arthrobacter sp., and Burkholderia sp., by plate count on Luria Broth with carbenicillin showed 75-88% survival of these isolates as compared to 36-48% of survival obtained from PCR fingerprinting. Arthrobacter sp. oxidized endosulfan to endosulfan sulfate which was further metabolized but no known metabolite of endosulfan sulfate was detected.

  19. Biotechnological methods for upgrading of bitumen, heavy oil, and residue. Final report for phase 2

    Energy Technology Data Exchange (ETDEWEB)

    Ching, G.; Rioux, S.; Scharer, J.M.; Moo-Young, M.

    1989-01-01

    Research was conducted on establishing the most suitable organisms and growth conditions for microbially upgrading Lloydminster crude. A series of comparative experiments were performed, using a variety of bacterial species and growth conditions for both Lloydminster crude and a synthetic analogue. These early experiments indicated a superiority of one organism, Arthrobacter paraffineus, in viscosity and interfacial surface tension reduction and for sulfur removal. Optimum growth conditions and medium compositions were determined. In a series of studies aimed at optimizing the performance of Arthrobacter paraffineus in a continuously stirred tank reactor, various combinations of media, aeration, and growth conditions were investigated using Lloydminster crude as a substrate. It was found that 12% of the organic sulfur could be removed during a six-day incubation period under aerobic conditions. Sulfur removal was dependent on growth conditions. Comparative studies under anaerobic conditions were performed with Desulfovibrio desulfuricans. Anoxic conditions were maintained by sparging the continuous stirred reactor with nitrogen. The sulfur removal ranged from 10.7% in synthetic media to 0.17% sulfur from crude oil. The low sulfur removal from crude oil was attributed to growth-inhibitory compounds in the crude. These preliminary results indicate that limited sulfur removal from crude oil is possible using monocultures of Arthrobacter paraffineus or Desulfovibrio desulfuricans. A concurrent beneficial effect is a reduction of viscosity (by biosurfactants) and surface tension obtainable under these conditions. 8 refs., 23 figs., 14 tabs.

  20. Native Michigan plants stimulate soil microbial species changes and PAH remediation at a legacy steel mill.

    Science.gov (United States)

    Thomas, John C; Cable, Edward; Dabkowski, Robert T; Gargala, Stephanie; McCall, Daniel; Pangrazzi, Garett; Pierson, Adam; Ripper, Mark; Russell, Donald K; Rugh, Clayton L

    2013-01-01

    A 1.3-acre phytoremediation site was constructed to mitigate polyaromatic hydrocarbon (PAH) contamination from a former steel mill in Michigan. Soil was amended with 10% (v/v) compost and 5% (v/v) poultry litter. The site was divided into twelve 11.89 m X 27.13 m plots, planted with approximately 35,000 native Michigan perennials, and soils sampled for three seasons. Soil microbial density generally increased in subplots of Eupatorium perfoliatum (boneset), Aster novae-angliae (New England aster), Andropogon gerardii (big bluestem), and Scirpus atrovirens (green bulrush) versus unplanted subplots. Using enumeration assays with root exudates, PAH degrading bacteria were greatest in soils beneath plants. Initially predominant, Arthrobacter were found capable of degrading a PAH cocktail in vitro, especially upon the addition of root exudate. Growth of some Arthrobacter isolates was stimulated by root exudate. The frequency of Arthrobacter declined in planted subplots with a concurrent increase in other species, including secondary PAH degraders Bacillus and Nocardioides. In subplots supporting only weeds, an increase in Pseudomonas density and little PAH removal were observed. This study supports the notion that a dynamic interplay between the soil, bacteria, and native plant root secretions likely contributes to in situ PAH phytoremediation.

  1. Bacterial biodegradation of melamine-contaminated aged soil: influence of different pre-culture media or addition of activation material.

    Science.gov (United States)

    Hatakeyama, Takashi; Takagi, Kazuhiro

    2016-08-01

    This study aimed to investigate the biodegrading potential of Arthrobacter sp. MCO, Arthrobacter sp. CSP, and Nocardioides sp. ATD6 in melamine-contaminated upland soil (melamine: approx. 10.5 mg/kg dry weight) after 30 days of incubation. The soil sample used in this study had undergone annual treatment of lime nitrogen, which included melamine; it was aged for more than 10 years in field. When R2A broth was used as the pre-culture medium, Arthrobacter sp. MCO could degrade 55 % of melamine after 30 days of incubation, but the other strains could hardly degrade melamine (approximately 25 %). The addition of trimethylglycine (betaine) in soil as an activation material enhanced the degradation rate of melamine by each strain; more than 50 % of melamine was degraded by all strains after 30 days of incubation. In particular, strain MCO could degrade 72 % of melamine. When the strains were pre-cultured in R2A broth containing melamine, the degradation rate of melamine in soil increased remarkably. The highest (72 %) melamine degradation rate was noted when strain MCO was used with betaine addition.

  2. Synthesis, radiolabeling and biological evaluation of propylene amine oxime complexes containing nitrotriazoles as hypoxia markers.

    Science.gov (United States)

    Huang, Huafan; Mei, Lei; Chu, Taiwei

    2012-06-04

    Two propylene amine oxime (PnAO) complexes, 1, containing a 3-nitro-1,2,4-triazole and 2, containing two 3-nitro-1,2,4-triazoles, were synthesized and radiolabeled with (99m)Tc in high labeling yields. Cellular uptakes of (99m)Tc-1 and (99m)Tc-2 were tested using a S180 cells line. Under anoxic conditions, the cellular uptakes of (99m)Tc-1 and (99m)Tc-2 were 33.7 ± 0.2% and 35.0 ± 0.7% at 4 h, whereas the normoxic uptakes of the two complexes were 6.0 ± 1.6% and 4.6 ± 0.9%, respectively. Both (99m)Tc-1 and (99m)Tc-2 displayed significant anoxic/normoxic differentials. The cellular uptakes were highly dependent on oxygen and temperature. Biodistribution studies revealed that both (99m)Tc-1 and (99m)Tc-2 showed a selective localization in tumor and slow clearance from it. At 4 h, the tumor-to-muscle ratios (T/M) were 3.79 for (99m)Tc-1 and 4.58 for (99m)Tc-2. These results suggested that (99m)Tc-labeled PnAO complexes (99m)Tc-1 and (99m)Tc-2 might serve as novel hypoxia markers. By introducing a second nitrotriazole redox center, the hypoxic accumulation of the marker was slightly enhanced.

  3. 盐胁迫下根际细菌对杨树生长和生理的影响%The effect of plant growth promoting bacteria on growth and physiology of poplars under salt stress

    Institute of Scientific and Technical Information of China (English)

    岳东霞; 张要武

    2011-01-01

    为了明确根际细菌对杨树耐盐能力的影响,采用盆栽方法研究了不同浓度NaCl胁迫下,根际细菌Bacillus sp.和Arthrobacter sp.对杨树生长和生理的影响.结果表明,Bacillus sp.对杨树株高没有明显的影响;在无NaCl或NaCl浓度为85.5 mol/L时,显著降低杨树叶片细胞膜透性;在NaCl浓度为119.7 mmol/L时,显著提高杨树叶片叶绿素含量;在85.5和119.7 mmol/L NaCl胁迫下,均显著提高杨树叶片含糖量,Arthrobacter sp.在119.7 mmol/L NaCl胁迫下,显著增加杨树株高;在无NaCl或NaCl浓度为85.5 mmol/L时显著降低杨树叶片细胞膜透性,不同浓度NaCl处理,对杨树叶片叶绿素含量均没有明显的作用;在85.5和119.7 mmol/L NaCl胁迫下,均显著提高杨树叶片含糖量.不同水平NaCl胁迫下,Bacillus sp.和Arthrobacter sp.对杨树叶片含水量均没有显著影响.%To identify the effect of rhizobacteria on salt tolerance of poplars, the impact of plant growth promoting bacteria(PGPR)-Bacillus sp. and Arthrobacter sp. on growth and physiology of poplars seedlings have been investigated in pot experiment. The inoculation of Arthrobacter sp. significantly increased the height of poplar seedlings grown in the presence of 119.7 mmol/L NaCI salt; Bacillus sp. had no obvious impact on height of poplar seedlings stressed by different NaC1 concentrations. The two bacteria decreased the membrane permeability in the presence of both 0 and 85.5 mmol/L NaC1. At salt stress conditions (85.5 and 119. 7 mmol/L), Bacillus sp. and Arthrobacter sp. significantly enhanced the content of soluble sugar. Bacillus sp. significantly increased the content of chlorophyll at 119.7 mmol/L NaC1 salt; Arthrobacter sp. had no effect on the content of chlorophyll under different NaCl concentrations. Both of the two bacteria had no significant effect on relative water content of poplar seedling leaves.

  4. Global map of lithosphere thermal thickness on a 1 deg x 1 deg grid - digitally available

    DEFF Research Database (Denmark)

    Artemieva, Irina

    2014-01-01

    than 250 km) lithosphere is restrictedsolely to young Archean terranes (3.0–2.6 Ga), while in old Archean cratons (3.6–3.0 Ga) lithospheric roots donot extend deeper than 200–220 km.The TC1 model is presented by a set of maps, which show significant thermal heterogeneity within continentalupper mantle......This presentation reports a 1 deg 1 deg global thermal model for the continental lithosphere (TC1). The modelis digitally available from the author’s web-site: www.lithosphere.info.Geotherms for continental terranes of different ages (early Archean to present) are constrained by reliabledata...

  5. 钛合金表面氟化物-磷酸盐转化膜的制备及性能研究%Preparation and Properties of Fluoride-Phosphate Conversion Coating Formed on Titanium Alloy

    Institute of Scientific and Technical Information of China (English)

    叶君; 杜楠; 王力强; 尹茂生; 周国华; 王帅星

    2015-01-01

    目的:研究一种钛合金化学转化工艺,增强钛合金表面防护能力及其与涂层的结合能力。方法通过单因素实验确定TC1钛合金氟化物-磷酸盐转化工艺,采用SEM,EDS,XRD分析膜层的微观形貌及成分,同时测试转化膜的有关性能。结果在Na3 PO440 g/L,NaF 15 g/L,酸度调节剂A 25 mL/L,pH控制在4.4~4.6之间,温度30益条件下,可在TC1钛合金表面获得均匀一致的灰色转化膜。转化膜由许多细小的球状晶粒组成,主要相成分为Na3 TiOF5及Na2 TiF6。转化膜的摩擦系数仅为0.3~0.5,明显低于TC1基体。转化膜与TB06-9底漆的干性附着力为0级,浸泡48 h后的湿态附着力仍可达1级,远远好于TC1基体。结论氟化物-磷酸盐转化膜可以降低TC1钛合金的摩擦系数,提高其与有机涂层的附着力。%ABSTRACT:Objective A chemical conversion technique was researched to enhance the protective ability of titanium alloy surface and the adhesion between titanium alloy and organic coating. Methods The preparation technique of fluoride-phosphate conversion coating formed on TC1 alloy was determined by the single-factor experiments. The microstructure and composition of conversion coating were analyzed by SEM, EDS and XRD. Besides, the related properties of the conversion coating were researched. Results A uniform, coherent and gray conversion coating could be obtained on the surface of TC1 alloy when Na3 PO4 , NaF, Acidity Regu-lator A, pH and temperature were 40 g/L, 15 g/L, 25 mL/L, 4. 4~4. 6 and 30 ℃, respectively. The microstructure of the coa-ting showed many small spherical grains. The main phase components were Na3 TiOF5 and Na2 TiF6 . The friction coefficient of the fluoride-phosphate conversion coating was only 0. 3~0. 5, which was significantly lower than that of TC1 alloy. The dry adhesion level between conversion coating and TB06-9 organic coating was 0, and the wet adhesion level after 48 h immersion could still reach 1, both were far

  6. Virus spread in complete bi-partite graphs

    NARCIS (Netherlands)

    Omic, J.S.; Kooij, R.E.; Mieghem, P. van

    2007-01-01

    In this paper we study the spread of viruses on the complete bi-partite graph Km,n. Using mean field theory we first show that the epidemic threshold for this type of graph satifies Tc = 1/√MN, hence, confirming previous results from literature. Next, we find an expression for the average number of

  7. EXISTENCE OF POSITIVE SOLUTION FOR A TWO—PATCHES COMPETITION SYSTEM WITH DIFFUSION AND TIME DELAY AND FUNCTIONAL RESPONSE

    Institute of Scientific and Technical Information of China (English)

    LiBiwen; ZengXianwu

    2003-01-01

    By using the continuation theorem of coincidence theory,the existence of a positive periodic solution for a two-patches competition system with diffusion and time delay and functional response {x′(t)=x1(t)[a1(t)-b1(t)x1(t)-c1(t)y(t)/[1+m(t)x1(t)

  8. The influence of co-formers on the dissolution rates of co-amorphous sulfamerazine/excipient systems

    DEFF Research Database (Denmark)

    Gniado, Katarzyna; Löbmann, Korbinian; Rades, Thomas;

    2016-01-01

    A comprehensive study on the dissolution properties of three co-amorphous sulfamerazine/excipient systems, namely sulfamerazine/deoxycholic acid, sulfamerazine/citric acid and sulfamerazine/sodium taurocholate (SMZ/DA, SMZ/CA and SMZ/NaTC; 1:1 molar ratio), is reported. While all three co-formers...

  9. Structural and Magnetic Properties of La and Sc Codoped BiFeO3

    Institute of Scientific and Technical Information of China (English)

    WU; Mei-mei; LIU; Rong-deng; WANG; Wei; LIU; Yun-tao; CHEN; Dong-feng

    2013-01-01

    Multiferroic materials exhibit simultaneous presence of ferroelectricity,ferromagnetism and ferroelasiticity,and have potential applications in information storage,spintronics,sensors etc.BiFeO3(BFO)is the most promising among these materials from the practical application point of view because of its high ferroelectric Curie(Tc=1 103 K)and Neel(TN=643 K)temperatures.

  10. Large entropy change accompanying two successive magnetic phase transitions in TbMn2Si2 for magnetic refrigeration

    Science.gov (United States)

    Li, Guoxing; Wang, Jianli; Cheng, Zhenxiang; Ren, Qingyong; Fang, Chunsheng; Dou, Shixue

    2015-05-01

    Structural and magnetic properties in TbMn2Si2 are studied by variable temperature X-ray diffraction, magnetization, electrical resistivity, and heat capacity measurements. TbMn2Si2 undergoes two successive magnetic transitions at around Tc1 = 50 K and Tc2 = 64 K. Tc1 remains almost constant with increasing magnetic field, but Tc2 shifts significantly to higher temperature. Thus, there are two partially overlapping peaks in the temperature dependence of magnetic entropy change, i.e., -ΔSM (T). The different responses of Tc1 and Tc2 to external magnetic field, and the overlapping of -ΔSM (T) around Tc1 and Tc2 induce a large refrigerant capacity (RC) within a large temperature range. The large reversible magnetocaloric effect (-ΔSMpeak ˜ 16 J/kg K for a field change of 0-5 T) and RC (=396 J/kg) indicate that TbMn2Si2 could be a promising candidate for low temperature magnetic refrigeration.

  11. Transposon associated markers for the parasitic nematode Haemonchus contortus

    NARCIS (Netherlands)

    Hoekstra, R.; Otsen, M.; Tibben, J.; Lenstra, J.A.; Roos, M.H.

    2000-01-01

    We have previously characterized a Tc1-like transposable element Hctc1, from the parasitic nematode Haemonchus contortus. Here we describe the genetic variation of Hctc1 insertion sites in H. contortus populations differing in geographical origin, resistance to chemotherapeutics and level of inbreed

  12. Co-culture of clonal beta cells with GLP-1 and glucagon-secreting cell line impacts on beta cell insulin secretion, proliferation and susceptibility to cytotoxins.

    Science.gov (United States)

    Green, Alastair D; Vasu, Srividya; Moffett, R Charlotte; Flatt, Peter R

    2016-06-01

    We investigated the direct effects on insulin releasing MIN6 cells of chronic exposure to GLP-1, glucagon or a combination of both peptides secreted from GLUTag L-cell and αTC1.9 alpha-cell lines in co-culture. MIN6, GLUTag and αTC1.9 cell lines exhibited high cellular hormone content and release of insulin, GLP-1 and glucagon, respectively. Co-culture of MIN6 cells with GLUTag cells significantly increased cellular insulin content, beta-cell proliferation, insulin secretory responses to a range of established secretogogues and afforded protection against exposure cytotoxic concentrations of glucose, lipid, streptozotocin or cytokines. Benefits of co-culture of MIN6 cells with αTC1.9 alphacells were limited to enhanced beta-cell proliferation with marginal positive actions on both insulin secretion and cellular protection. In contrast, co-culture of MIN6 with GLUTag cells plus αTC1.9 cells, markedly enhanced both insulin secretory responses and protection against beta-cell toxins compared with co-culture with GLUTag cells alone. These data indicate important long-term effects of conjoint GLP-1 and glucagon exposure on beta-cell function. This illustrates the possible functional significance of alpha-cell GLP-1 production as well as direct beneficial effects of dual agonism at beta-cell GLP-1 and glucagon receptors.

  13. Improved patient selection by stratified surgical intervention

    DEFF Research Database (Denmark)

    Wang, Miao; Bünger, Cody E; Li, Haisheng

    2015-01-01

    BACKGROUND CONTEXT: Choosing the best surgical treatment for patients with spinal metastases remains a significant challenge for spine surgeons. There is currently no gold standard for surgical treatments. The Aarhus Spinal Metastases Algorithm (ASMA) was established to help surgeons choose...... the most appropriate surgical intervention for patients with spinal metastases. PURPOSE: The purpose of this study was to evaluate the clinical outcome of stratified surgical interventions based on the ASMA, which combines life expectancy and the anatomical classification of patients with spinal metastases...... survival times in the five surgical groups determined by the ASMA were 2.1 (TS 0-4, TC 1-7), 5.1 (TS 5-8, TC 1-7), 12.1 (TS 9-11, TC 1-7 or TS 12-15, TC 7), 26.0 (TS 12-15, TC 4-6), and 36.0 (TS 12-15, TC 1-3) months. The 30-day mortality rate was 7.5%. Postoperative neurological function was maintained...

  14. Altered regulation of tau phosphorylation in a mouse model of down syndrome aging.

    Science.gov (United States)

    Sheppard, Olivia; Plattner, Florian; Rubin, Anna; Slender, Amy; Linehan, Jacqueline M; Brandner, Sebastian; Tybulewicz, Victor L J; Fisher, Elizabeth M C; Wiseman, Frances K

    2012-04-01

    Down syndrome (DS) results from trisomy of human chromosome 21 (Hsa21) and is associated with an increased risk of Alzheimer's disease (AD). Here, using the unique transchromosomic Tc1 mouse model of DS we investigate the influence of trisomy of Hsa21 on the protein tau, which is hyperphosphorylated in Alzheimer's disease. We show that in old, but not young, Tc1 mice increased phosphorylation of tau occurs at a site suggested to be targeted by the Hsa21 encoded kinase, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A (DYRK1A). We show that DYRK1A is upregulated in young and old Tc1 mice, but that young trisomic mice may be protected from accumulating aberrantly phosphorylated tau. We observe that the key tau kinase, glycogen synthase kinase3-β (GSK-3β) is aberrantly phosphorylated at an inhibitory site in the aged Tc1 brain which may reduce total glycogen synthase kinase3-β activity. It is possible that a similar mechanism may also occur in people with DS.

  15. Flow Fields with Vortex in a Small Semi-open Axial Fan

    Institute of Scientific and Technical Information of China (English)

    Norimasa. Shiomi; Yoichi Kinoue; Ying zi Jin; Toshiaki Setoguchi; Kenji Kaneko

    2009-01-01

    In order to clarify the effect of tip clearance (TC) size on fan performance and the flow field at rotor outlet in a small semi-open axial fan, the experimental investigation was carried out. The tip diameter of test fan rotor was 180mm and test TC sizes were 1 mm (TC=1 mm) and 4mm (TC=4mm). Fan characteristics tests were carried out for two cases of TC size and three-dimensional velocity fields at rotor outlet were measured using a single slant hot-wire probe at four flow-rate conditions. As a result, it was found that the pressure -flow-rate characteristics curves for two cases showed almost the same tendency. However, the ensemble averaged velocity profiles along radial measurement stations of TC=4mm largely changed compared with that of TC=1mm in cases of small flow-rate condition. From the phase-locked averaging results, it was also found that the vortex existed in the rotor outlet flow field of high flow-rate condition for each TC case. Compared with the vortices for TC=1mm and TC=4mm, the vortex for TC=4mm was stronger than that for TC=1mm.

  16. First China-Europe Satellite Successfully Launched

    Institute of Scientific and Technical Information of China (English)

    HeYing

    2004-01-01

    On December 30, 2003 China successfully launched TC-1,the first of two scientific satellites known as Double Star, The mission,the first time that European instruments were integrated with Chinese satellites,was carried out by a Long March 2C/SM rocket at 3:06 am from the Xichang Satellite Launch Center in Sichuan province.

  17. LM-2C Series Launch Vehicles

    Institute of Scientific and Technical Information of China (English)

    XueFuxing

    2004-01-01

    On December 30, 2003, a LM-2C/SM launch vehicle was launched from Xichang Satellite Launch Center (XSLC), successfully sending TC-1 satellite into orbit. The satellite is the first one of the two scientific satellites known as Double Star. The operation orbit of the satellite is the highest compared with China's other satellites ever launched.

  18. Assessment of the Activation State of Rho Family GTP-Binding Proteins in Breast Cancer Cells and Specimens

    Science.gov (United States)

    2004-08-01

    TC1O in insulin- binding. Not unlike the cases of other GEF-G stimulated GLUT4 translocation [651. The complexes, Tiam 1 disturbed the native... GLUT4 translocation requires the progression, JNK mitogen-activated protein remodel cytoskeletal actin. Nat. Cell Biol. 2, CAP-dependent activation

  19. Increasing a Robust Antigen-Specific Cytotoxic T Lymphocyte Response by FMDV DNA Vaccination with IL-9 Expressing Construct

    Directory of Open Access Journals (Sweden)

    Qiang Zou

    2010-01-01

    Full Text Available Various chemokines and cytokines as adjuvants can be used to improve efficacy of DNA vaccination. In this study, we sought to investigate if a DNA construct expressing IL-9 (designed as proV-IL9 as a molecular adjuvant enhance antigen specific immune responses elicited by the pcD-VP1 DNA vaccination. Mice immunized with pcD-VP1 combined with proV-IL9 developed a strong humoral response. In addition, the coinoculation induced significant higher level of antigen-specific cell proliferation and cytotoxic response. This agreed well with higher expression level of IFN-γ and perforin in CD8+ T cells, but not with IL-17 in these T cells. The results indicate that IL-9 induces the development of IFN-γ-producing CD8+ T cells (Tc1, but not the IL-17-producing CD8+ T cells (Tc17. Up-regulated expressions of BCL-2 and BCL-XL were exhibited in these Tc1 cells, suggesting that IL-9 may trigger antiapoptosis mechanism in these cells. Together, these results demonstrated that IL-9 used as molecular adjuvant could enhance the immunogenicity of DNA vaccination, in augmenting humoral and cellular responses and particularly promoting Tc1 activations. Thus, the IL-9 may be utilized as a potent Tc1 adjuvant for DNA vaccines.

  20. Experimental study of radiopharmaceuticals based on technetium-99m labeled derivative of glucose for tumor diagnosis

    Science.gov (United States)

    Zeltchan, R.; Medvedeva, A.; Sinilkin, I.; Bragina, O.; Chernov, V.; Stasyuk, E.; Rogov, A.; Il'ina, E.; Larionova, L.; Skuridin, V.; Dergilev, A.

    2016-06-01

    Purpose: to study the potential utility of 1-thio-D-glucose labeled with 99mTc for cancer imaging in laboratory animals. Materials and method: the study was carried out in cell cultures of normal CHO (Chinese hamster ovary cells CHO) and malignant tissues MCF-7 (human breast adenocarcinoma MCF-7). To evaluate the uptake of 99mTc-1-thio-D-glucose in normal and tumor tissue cells, 25 MBq of 1-thio-D-glucose labeled with 99mTc was added to the vials with 3 million cells and incubated for 30 minutes at room temperature. After centrifugation of the vials with cells, the supernatant was removed. Radioactivity in vials with normal and tumor cells was then measured. In addition, the study included 40 mice of C57B 1/6j lines with tumor lesion of the right femur. For neoplastic lesions, Lewis lung carcinoma model was used. Following anesthesia, mice were injected intravenously with 25MBq of 99mTc-1-thio-D-glucose. Planar scintigraphy was performed 15 minutes later in a matrix of 512x512 pixels for 5 minutes. Results: when measuring the radioactivity of normal and malignant cells after incubation with 99mTc-1-thio-D- glucose, it was found that the radioactivity of malignant cells was higher than that of normal cells. The mean values of radioactivity levels in normal and malignant cells were 0.3±0.15MBq and 1.07±0.6MBq, respectively. All examined animals had increased accumulation of 99mTc-1-thio- D-glucose at the tumor site. The accumulation of 99mTc-1-thio-D-glucose in the tumor was on average twice as high as compared to the symmetric region. Conclusion: The present study demonstrated that 99mTc-1-thio-D-glucose is a prospective radiopharmaceutical for cancer visualization. In addition, high accumulation of 99mTc-1-thio-D-glucose in the culture of cancer cells and in tumor tissue of animals demonstrates tumor tropism of the radiopharmaceutical.

  1. Study of potential utility of new radiopharmaceuticals based on technetium-99m labeled derivative of glucose

    Science.gov (United States)

    Zeltchan, R.; Medvedeva, A.; Sinilkin, I.; Chernov, V.; Stasyuk, E.; Rogov, A.; Il'ina, E.; Larionova, L.; Skuridin, V.

    2016-08-01

    Purpose: to study the potential utility of 1-thio-D-glucose labeled with 99mTc for cancer imaging in laboratory animals. Materials and method: the study was carried out in cell cultures of normal CHO (Chinese hamster ovary cells CHO) and malignant tissues MCF-7 (human breast adenocarcinoma MCF-7). To evaluate the uptake of 99mTc-1-thio-D-glucose in normal and tumor tissue cells, 25 MBq of 1-thio-D-glucose labeled with 99mTc was added to the vials with 3 million cells and incubated for 30 min at room temperature. After centrifugation of the vials with cells, the supernatant was removed. The radioactivity in vials with normal and tumor cells was then measured. In addition, the study included 40 mice of C57B1/6j lines with tumor lesion of the right femur. For neoplastic lesions, Lewis lung carcinoma model was used. Following anesthesia, mice were injected intravenously with 25 MBq of 99mTc-1-thio-D-glucose. Planar scintigraphy was performed 15 minutes later in a matrix of 512x512 pixels for 5 min. Results: when measuring the radioactivity of normal and malignant cells after incubation with 99mTc-1-thio-D-glucose, it was found that the radioactivity of malignant cells was higher than that of normal cells. The mean values of radioactivity levels in normal and malignant cells were 0.3 ± 0.15 MBq and 1.07 ± 0.6 MBq, respectively. All examined animals had increased accumulation of 99mTc-1-thio-D-glucose at the tumor site. The accumulation of 99mTc-1-thio-D-glucose in the tumor was on average twice as high as compared to the symmetric region. Conclusion: The present study demonstrated that 99mTc-1-thio-D-glucose is a prospective radiopharmaceutical for cancer visualization. In addition, high accumulation of 99mTc-1-thio-D-glucose in the culture of cancer cells and in tumor tissue of animals demonstrates tumor tropism of the radiopharmaceutical.

  2. Type 1 CD8+ T Cells are Superior to Type 2 CD8+ T Cells in Tumor Immunotherapy due to Their Efficient Cytotoxicity, Prolonged Survival and Type 1 Immune Modulation

    Institute of Scientific and Technical Information of China (English)

    Zhenmin Ye; Chaoke Tang; Shulin Xu; Bei Zhang; Xueshu Zhang; Terence Moyana; Jicheng Yang; Jim Xiang

    2007-01-01

    CD8+ cytotoxic T (Tc) cells play a crucial role in host immune responses to cancer, and in this context, adoptive CD8+ Tc cell therapy has been studied in numerous animal tumor models. Its antitumor efficacy is, to a large extent,determined by the ability of Tc cells to survive and infiltrate tumors. In clinical trials, such in vitro-activated T cells often die within hours to days, and this greatly limits their therapeutic efficacy. CD8+ Tc cells fall into two subpopulations based upon their differential cytokine secretion. In this study, we in vitro generated that ovalbumin(OVA)-pulsed dendritic cell (DCOVA)-activated CD8+ type 1 Tc (Tc1) cells secreting IFN-γ, and CD8+ type 2 Tc (Tc2)cells secreting IL-4, IL-5 and IL-10, which were derived from OVA-specific T cell receptor (TCR) transgenic OT I mice. We then systemically investigated the in vitro and in vivo effector function and survival of Tc1 and Tc2 cells,and then assessed their survival kinetics after adoptively transferred into C57BL/6 mice, respectively. We demonstrated that, when compared to CD8+ Tc2, Tc1 cells were significantly more effective in perforin-mediated cytotoxicity to tumor cells, had a significantly higher capacity for in vivo survival after the adoptive T cell transfer,and had a significantly stronger therapeutic effect on eradication of well-established tumors expressing OVA in animal models. In addition, CD8+Tc1 and Tc2 cells skewed the phenotype of CD4+ T cells toward Th1 and Th2 type, respectively. Therefore, the information regarding the differential effector function, survival and immune modulation of CD8+ Tc1 and Tc2 cells may provide useful information when preparing in vitro DC-activated CD8+ T cells for adoptive T cell therapy of cancer.

  3. The HIA instrument on board the Tan Ce 1 Double Star near-equatorial spacecraft and its first results

    Directory of Open Access Journals (Sweden)

    H. Rème

    2005-11-01

    Full Text Available On 29 December 2003, the Chinese spacecraft Tan Ce 1 (TC-1, the first component of the Double Star mission, was successfully launched within a low-latitude eccentric orbit. In the framework of the scientific cooperation between the Academy of Sciences of China and ESA, several European instruments, identical to those developed for the Cluster spacecraft, were installed on board this spacecraft.

    The HIA (Hot Ion Analyzer instrument on board the TC-1 spacecraft is an ion spectrometer nearly identical to the HIA sensor of the CIS instrument on board the 4 Cluster spacecraft. This instrument has been specially adapted for TC-1. It measures the 3-D distribution functions of the ions between 5 eV/q and 32 keV/q without mass discrimination.

    TC-1 is like a fifth Cluster spacecraft to study the interaction of the solar wind with the magnetosphere and to study geomagnetic storms and magnetospheric substorms in the near equatorial plane.

    HIA was commissioned in February 2004. Due to the 2 RE higher apogee than expected, some in-flight improvements were needed in order to use HIA in the solar wind in the initial phase of the mission. Since this period HIA has obtained very good measurements in the solar wind, the magnetosheath, the dayside and nightside plasma sheet, the ring current and the radiation belts. We present here the first results in the different regions of the magnetosphere and in the solar wind. Some of them are very new and include, for example, ion dispersion structures in the bow shock and ion beams close to the magnetopause. The huge interest in the orbit of TC-1 is strongly demonstrated.

  4. How stress alters memory in 'smart' snails.

    Directory of Open Access Journals (Sweden)

    Sarah Dalesman

    Full Text Available Cognitive ability varies within species, but whether this variation alters the manner in which memory formation is affected by environmental stress is unclear. The great pond snail, Lymnaea stagnalis, is commonly used as model species in studies of learning and memory. The majority of those studies used a single laboratory strain (i.e. the Dutch strain originating from a wild population in the Netherlands. However, our recent work has identified natural populations that demonstrate significantly enhanced long-term memory (LTM formation relative to the Dutch strain following operant conditioning of aerial respiratory behaviour. Here we assess how two populations with enhanced memory formation (i.e. 'smart' snails, one from Canada (Trans Canada 1: TC1 and one from the U.K. (Chilton Moor: CM respond to ecologically relevant stressors. In control conditions the Dutch strain forms memory lasting 1-3 h following a single 0.5 h training session in our standard calcium pond water (80 mg/l [Ca(2+], whereas the TC1 and CM populations formed LTM lasting 5+ days following this training regime. Exposure to low environmental calcium pond water (20 mg/l [Ca(2+], which blocks LTM in the Dutch strain, reduced LTM retention to 24 h in the TC1 and CM populations. Crowding (20 snails in 100 ml immediately prior to training blocks LTM in the Dutch strain, and also did so in TC1 and CM populations. Therefore, snails with enhanced cognitive ability respond to these ecologically relevant stressors in a similar manner to the Dutch strain, but are more robust at forming LTM in a low calcium environment. Despite the two populations (CM and TC1 originating from different continents, LTM formation was indistinguishable in both control and stressed conditions. This indicates that the underlying mechanisms controlling cognitive differences among populations may be highly conserved in L. stagnalis.

  5. Characterization of aerobic bacterial and fungal microbiota on surfaces of historic Scottish monuments.

    Science.gov (United States)

    Suihko, Maija-Liisa; Alakomi, Hanna-Leena; Gorbushina, Anna; Fortune, Irene; Marquardt, Jürgen; Saarela, Maria

    2007-09-01

    Twenty samples were taken from the inner or outer surfaces of stone monuments of six historic Scottish buildings and ruins. Biofilms developing on mineral substrates were analysed by in situ scanning electron microscopy and cultivation. Various methods were used to characterize the isolates including automated ribotyping, RAPD and sequencing of the 16S rRNA gene for bacteria, and stereomicroscopy and sequencing of the Internal Transcribed Spacers (ITS) for fungi. Most samples contained microbes between 10(5) and 10(7)cfug(-1) substrate. Actinobacteria belonging to the genus Streptomyces (17 samples/5 monuments) or Arthrobacter (12/3) and Pseudomonas (9/3) were frequently detected. Most streptomycetes were in terms of their 16S rRNA gene sequence most closely related to S. microflavus (10/3) or to the undescribed species S. "vulgaris" (8/3). Indoor and outdoor biofilms exhibited significant differences in their microbiota, as shown by both microscopy and isolation studies. Pigmented coccoid Arthrobacter species were typical for the outdoor samples, whereas Pseudomonas species were common in the indoor samples. Based on the low phylogenetic relationship to a known species (type strain), potential novel pigmented bacterial species belonging to the genera Arthrobacter, Brevundimonas, Cryseobacterium, Deinococcus and Dyadobacter were detected from the outdoor samples and to Pseudomonas from the indoor samples. Hyaline fungal species of Acremonium (10/4) mainly occurred in indoor samples, whereas pigmented species of Cladosporium (8/3), Penicillium (6/3) and Phialophora (6/2) were found outdoors. Using in situ microscopy diatom algae were also detected.

  6. Metabolic versatility of Gram-positive microbial isolates from contaminated river sediments

    Energy Technology Data Exchange (ETDEWEB)

    Narancic, Tanja; Djokic, Lidija [Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, P.O. Box 23, 11010 Belgrade (Serbia); Kenny, Shane T.; O' Connor, Kevin E. [School of Biomolecular and Biomedical Sciences, Centre for Synthesis and Chemical Biology, University College Dublin, Belfield, Dublin 4 (Ireland); Radulovic, Vanja [Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, P.O. Box 23, 11010 Belgrade (Serbia); Nikodinovic-Runic, Jasmina, E-mail: jasminanikodinovic@gmail.com [Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, P.O. Box 23, 11010 Belgrade (Serbia); Vasiljevic, Branka [Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, P.O. Box 23, 11010 Belgrade (Serbia)

    2012-05-15

    Highlights: Black-Right-Pointing-Pointer Thirty-four isolated Gram-positive bacteria could degrade wide range of aromatic pollutants. Black-Right-Pointing-Pointer Nine isolates could grow in the presence of extremely high levels of heavy metals. Black-Right-Pointing-Pointer Twelve isolates accumulated polyphosphate, 3 polyhydroxybutyrate, 4 exopolysaccharides. Black-Right-Pointing-Pointer The incidence of multiple antibiotic resistance markers among isolates was low. - Abstract: Gram-positive bacteria from river sediments affected by the proximity of a petrochemical industrial site were isolated and characterized with respect to their ability to degrade a wide range of aromatic compounds. In this study we identified metabolically diverse Gram-positive bacteria capable of growth on wide range aromatic compounds in the presence of heavy metals and with the ability to accumulate biopolymers. Thirty-four isolates that were able to use 9 or more common aromatic pollutants, such as benzene, biphenyl, naphthalene etc. as a sole source of carbon and energy included members of Bacillus, Arthrobacter, Rhodococcus, Gordonia, Streptomyces, and Staphylococcus genus. Rhodococcus sp. TN105, Gordonia sp. TN103 and Arthrobacter sp. TN221 were identified as novel strains. Nine isolates were able to grow in the presence of one or more metals (mercury, cadmium, nickel) at high concentration (100 mM). Seven isolates could degrade 15 different aromatic compounds and could grow in the presence of one or more heavy metals. Two of these isolates were resistant to multiple antibiotics including erythromycin and nalidixic acid. One third of isolates could accumulate at least one biopolymer. Twelve isolates (mainly Bacillus sp. and Arthrobacter sp.) accumulated polyphosphate, 3 Bacillus sp. accumulated polyhydroxybutyrate, while 4 isolates could accumulate exopolysaccharides.

  7. Whole cell-enzyme hybrid amperometric biosensor for direct determination of organophosphorous nerve agents with p-nitrophenyl substituent.

    Science.gov (United States)

    Lei, Yu; Mulchandani, Priti; Chen, Wilfred; Wang, Joseph; Mulchandani, Ashok

    2004-03-30

    In this paper, we reported the construction of a hybrid biosensor for direct, highly selective, sensitive, and rapid quantitative determination of organophosphate pesticides with p-nitrophenyl substituent using purified organophosphorus hydrolase (OPH) for the initial hydrolysis and Arthrobacter sp. JS443 for subsequent p-nitrophenol oxidation. The biocatalytic layer was prepared by co-immobilizing Arthrobacter sp. JS443 and OPH on a carbon paste electrode. OPH catalyzed the hydrolysis of organophosphorus pesticides with p-nitrophenyl substituent such as paraoxon and methyl parathion to release p-nitrophenol that was oxidized by the enzymatic machinery of Arthrobacter sp. JS443 to carbon dioxide through electroactive intermediates 4-nitrocatechol and 1,2,4-benzenetriol. The oxidization current of the intermediates was measured and correlated to the concentration of organophosphates. The best sensitivity and response time were obtained using a sensor constructed with 0.06 mg dry weight of cell and 965 IU of OPH operating at 400 mV applied potential (vs. Ag/AgCl reference) in 50 mM citrate-phosphate pH 7.5 buffer at room temperature. Using these conditions, the biosensor measured as low as 2.8 ppb (10 nM) of paraoxon and 5.3 ppb (20 nM) of methyl parathion without interference from phenolic compounds, carbamate pesticides, triazine herbicides, and organophosphate pesticides that do not have the p-nitrophenyl substituent. The biosensor had excellent operational life-time stability with no decrease in response for more than 40 repeated uses over a 12-h period when stored at room temperature, while its storage life was approximately 2 days when stored in the operating buffer at 4 degrees C.

  8. Study on screening and degradation characteristic of Atrazine -degrading strains%阿特拉津降解菌的筛选及降解性能研究

    Institute of Scientific and Technical Information of China (English)

    任登洲; 高小朋; 贺晓龙; 任桂梅; 王小峰

    2009-01-01

    从陕北地区受阿特拉津污染的土壤中分离、纯化得到3株可降解阿特拉津的菌株,分别编号为AT-1、AT-2和AT-3,27 h的阿特拉津降解率分别为79.2%、77.6%、70.4%,初步鉴定这3株菌均属节杆菌属(Arthrobacter).

  9. ISOLATION OF EFFECTIVELY BUTACHLOR DEGRADATING BACTERIUM%丁草胺高效降解细菌的分离

    Institute of Scientific and Technical Information of China (English)

    吴新杰; 岳永德; 花日茂; 汤锋

    2000-01-01

    A bacterium strain WY306, which could degrade herbicide butachlor effectively in basal medium, was isolated from a batch culture with butachlor as sole carbon source and paddy soil from Feidong county as inoculum. The isolated strain WY306 was identified as Arthrobacter sp. according to its morphological appearances and physiological characteristics. The degradation rate of butachlor by Arthrobacter sp. WY306 is heavily affected by the initial biomass, concentration of added butachlor and incubation temperature. The half lifes of butachlor are all no more than 3.68 hours under different conditions in this experment. Fig 3, Tab 2, Ref 16%通过瓶培养法富集培养,从肥东县一块单晚稻田土中分离出一株丁草胺高效降解细菌WY306,经鉴定,该菌为节杆菌属菌Arthrobacter sp. WY306. Arthrobacter sp. WY306降解丁草胺的影响因素研究表明:丁草胺降解半衰期与初始菌量近似成反比;当丁草胺添加浓度为5、9 mg/L时,其降解半衰期分别为0.97 h和1.86 h,随浓度的增大而增大,而当丁草胺添加浓度为0.8 mg/L或其浓度被降解至1 mg/L附近处,降解变慢,当其浓度进一步降解至0.2~0.3 mg/L时,丁草胺就几乎不再被降解;培养温度为30 ℃时,其降解半衰期为1.86 h短于20 ℃时的半衰期2.44 h.在本试验不同降解条件下,该菌对丁草胺的降解半衰期均不高于3.68 h. 图3 表2 参16

  10. Physical mapping of BK virus DNA with SacI, MboII, and AluI restriction endonucleases.

    Science.gov (United States)

    Yang, R C; Wu, R

    1978-12-01

    A new restriction endonuclease, SacI from Streptomyces achromogenes cleaves BK virus (strain MM) DNA into 3 fragments, whereas MboII from Moraxella bovis and AluI from Arthrobacter luteus give 22 and 30 fragments, respectively. All these specific DNA fragments were ordered and mapped on the viral genome by two methods first, by the reciprocal digestion method using uniformly 32P-labeled DNA; and second, by the partial digestion technique using the single-end 32P-labeled DNA. This study, together with those reported earlier, defined the location of 90 cleavage sites on the BK virus DNA.

  11. MERCURY ADSORPTION BY ARTHOBACTER GLOBIFORMIS AND SPIRULINA PLATENSIS

    Directory of Open Access Journals (Sweden)

    T. L. Kalabegishvili

    2011-06-01

    Full Text Available The increasing contamination of soil, sediment, and water with heavy metals by natural and industrial processes is a worldwide problem. Many bacteria and microalgae have demonstrated ability to absorb toxic elements. To study mercury biosorption by bacteria Arthrobacter globiformis and microalga Spirulina platensis neutron activation analysis (NAA was applied. The process of mercury biosorption by these media was described by Freundlich and Langmuir-Freundlich Model. Both microorganisms showed a great potential to be used as biosorbing agents for mercury removal from the environment.

  12. [Formation of microbial populations on the surface of protective coatings].

    Science.gov (United States)

    Kopteva, Zh P; Zanina, V V; Piliashenko-Novokhatnyĭ, A I; Kopteva, A E; Kozlova, I A

    2001-01-01

    Formation of microbial cenosis on the surface of polyethylene-, polyurethane- and oil-bitumen-based protective coatings was studied in dynamics during 1, 3, 7, 14 and 21 days. It has been shown that the biofilm was formed on the protective materials during 14 days and consisted of ammonifying, denitrifying, hydrocarbon-oxidizing and sulphate-reducing bacteria referred to Pseudomonas, Arthrobacter, Bacillus and Kesulfovibrio genera. The bacteria which form the biofilm on coatings possess high denitrifying and sulphate-reducing activities. Corrosion inhibitors-biocydes, introduced in composition of oil-bitumen coatings suppressed growth and metabolic activity of corrosion-active bacteria.

  13. 海带中岩藻多糖的分离纯化与结构分析%Isolation,Purification and Structural Analysis of Fucoidan from Kelp

    Institute of Scientific and Technical Information of China (English)

    张文清; 左萍萍; 徐辰; 杨蕾; 张玉龙; 夏玮

    2012-01-01

    A homogeneous polysaccharide named as TC-1 was obtained from kelp by DEAE-cellulose and gel filtration chromatography.Its chemical structure was characterized by means of monosaccharide composition analysis,methylation analysis and IR spectroscopic analysis.TC-1 was a complex sulfated polysaccharide with a weight-average molecular weight of 3.7 × 105.TC-1 mainly consisted of fucose and small amounts of xylose,mannose,glucose and galactose were also found.The chain of TC-1 included 1,4-linked or 1,3-linked fucose,1,3-linked xylose,1,3-linked or 1,6-linked mannose,1,3,4-linked or 1,2,4,6-linked glucose,and 1,6-linked,1,3,6-linked,or 1,3,4,6-linked galactose.%通过DEAE-纤维素和凝胶过滤色谱反复柱层析,采用苯酚-硫酸法和高效凝胶过滤色谱法(HPGFC)检测,从提取的海带岩藻多糖中得到了均一多糖TC-1,并结合多种分析手段:包括糖组成分析、甲基化分析、红外光谱(IR)分析等对其化学结构进行测定。结果表明:TC-1重均相对分子质量(Mw)为3.7×105,主要由岩藻糖构成,此外还伴有少量的木糖、甘露糖、葡萄糖和半乳糖组成的结构复杂的硫酸酯多糖。其中岩藻糖糖基以1,4-、1,3-连接方式存在;木糖以1,3-连接方式存在;甘露糖以1,3-、1,6-连接方式存在;葡萄糖以1,3,4-、1,2,4,6-连接方式存在;半乳糖以1,6-、1,3,6-、1,3,4,6-连接方式存在。

  14. Exploring bacterial community structure and function associated with atrazine biodegradation in repeatedly treated soils.

    Science.gov (United States)

    Fang, Hua; Lian, Jianjun; Wang, Huifang; Cai, Lin; Yu, Yunlong

    2015-04-09

    Substantial application of the herbicide atrazine in agriculture leads to persistent contamination, which may damage the succeeding crops and pose potential threats to soil ecology and environmental health. Here, the degradation characteristics of atrazine and dynamic change of soil bacterial community structure and function as well as their relations were studied during three repeated treatments at the recommended, double, and five-fold doses. The results showed that the degradation half-life of atrazine obviously decreased with increased treatment frequency. Soil microbial functional diversity displayed a variation trend of suppression-recovery-stimulation, which was associated with increased degradation rate of atrazine. 16S amplicon sequencing was conducted to explore bacterial community structure and correlate the genus to potential atrazine degradation. A total of seven potentially atrazine-degrading bacterial genera were found including Nocardioides, Arthrobacter, Bradyrhizobium, Burkholderia, Methylobacterium, Mycobacterium, and Clostridium. These bacterial genera showed almost complete atrazine degradation pathways including dechlorination, dealkylation, hydroxylation, and ring cleavage. Furthermore, the relative abundance of four of them (i.e., Nocardioides, Arthrobacter, Methylobacterium, and Bradyrhizobium) increased with treatment frequency and atrazine concentration, suggesting that they may participate in atrazine degradation during repeated treatments. Our findings reveal the potential relationship between atrazine degradation and soil bacterial community structure in repeatedly treated soils.

  15. Biodiversity and phylogenetic analysis of the gut microbiome ofEuphausia superba Dana from the Rose Sea of the Antarctic Ocean

    Institute of Scientific and Technical Information of China (English)

    YUAN Lidong; LI Lingzhi; TIAN Xiaoqing; TANG Yingying; FAN Chengqi; HUANG Hongliang; YANG Qiao

    2016-01-01

    Metabolites derived from marine symbiotic microorganisms have great potential as lead compounds for the discovery of novel marine drugs.Euphausia superba Dana, which lives in the Antarctic Ocean, is regarded as a new source of marine microbial natural products. However, no studies have examined the biodiversity of the symbiotic intestinal microbiome ofE. superba. To address this issue, the species diversity and abundance of the gut microbiome ofE. superba Dana from the Rose Sea of the Antarctic Ocean were analyzed by culture-independent high-throughput sequencing and pure culture methods. A comparison with gene databases revealed that the microbiome contained 61 known microbial species and a plethora of uncultivable microorganisms. Additionally, 7% of the species in the microbiome were currently unknown. The microbes belonged to 56 genera, eight of which, includingArthrobacter,Bacillus,Candidatus,Lactococcus,Lysinibacillus,Leuconostoc,Solibacillus, andVibrio, were dominant, as wereVibrionaceae spp. Moreover, 81 microbial strains were isolated by the pure culture method, and they belonged to 36 genera, includingMobilicoccus,Rhodococcus,Arthrobacter, andMicrobacterium. The results obtained by two different methods demonstrate the richness of the microbial biodiversity of the gut microbiome ofE. superba, and it also suggests that they have good potential for the discovery of novel marine microbial species.

  16. Survival of microbial isolates from clouds toward simulated atmospheric stress factors

    Science.gov (United States)

    Joly, Muriel; Amato, Pierre; Sancelme, Martine; Vinatier, Virginie; Abrantes, Magali; Deguillaume, Laurent; Delort, Anne-Marie

    2015-09-01

    In the atmosphere, airborne microbial cells are exposed to conditions that are thought to affect their survival. Here, we investigated the survival of 5 microorganisms among the most represented in the cultivable community of clouds (4 bacteria affiliated to Pseudomonas, Sphingomonas and Arthrobacter and 1 yeast of Dioszegia) after exposition to different atmospheric factors generally considered stressful for cells: artificial solar light (10 h), oxidant (hydrogen peroxide: 0-1 mM for 90 min), osmotic shocks (0.1-2.5 M NaCl) and freeze-thaw cycles (6 cycles of 5 °C/-40 °C). Each condition was applied separately to cell suspensions, and survival rates were examined by culture. Survival was highly strain and stress dependent, with no relationship with pigmentation or ice nucleation activity. In all strains, solar light had no or mitigated influence, and exposition to H2O2 at the concentration measured in cloud water only slightly impacted viability (>70% of the cells survived). The strain Sphingomonas sp. was particularly impacted by osmotic shocks while repeated freeze-thaw was particularly damaging for Arthrobacter and Pseudomonas species. Overall, our results tend to indicate that in the atmosphere, the most stringent selection factors on living organisms are probably freeze-thaw and condensation/evaporation (osmotic shocks) cycles, whereas the impacts of oxidants and of solar light are limited.

  17. Antimicrobial Activity of Medicinal Plants Correlates with the Proportion of Antagonistic Endophytes

    Science.gov (United States)

    Egamberdieva, Dilfuza; Wirth, Stephan; Behrendt, Undine; Ahmad, Parvaiz; Berg, Gabriele

    2017-01-01

    Medicinal plants are known to harbor potential endophytic microbes, due to their bioactive compounds. In a first study of ongoing research, endophytic bacteria were isolated from two medicinal plants, Hypericum perforatum and Ziziphora capitata with contrasting antimicrobial activities from the Chatkal Biosphere Reserve of Uzbekistan, and their plant-specific traits involved in biocontrol and plant growth promotion were evaluated. Plant extracts of H. perforatum exhibited a remarkable activity against bacterial and fungal pathogens, whereas extracts of Z. capitata did not exhibit any potential antimicrobial activity. Matrix-assisted laser desorption ionization (MALDI) time-of-flight (TOF) mass spectrometry (MS) was used to identify plant associated culturable endophytic bacteria. The isolated culturable endophytes associated with H. perforatum belong to eight genera (Arthrobacter, Achromobacter, Bacillus, Enterobacter, Erwinia, Pseudomonas, Pantoea, Serratia, and Stenotrophomonas). The endophytic isolates from Z. capitata also contain those genera except Arthrobacter, Serratia, and Stenotrophomonas. H. perforatum with antibacterial activity supported more bacteria with antagonistic activity, as compared to Z. capitata. The antagonistic isolates were able to control tomato root rot caused by Fusarium oxysporum and stimulated plant growth under greenhouse conditions and could thus be a cost-effective source for agro-based biological control agents. PMID:28232827

  18. Potential of Polycyclic Aromatic Hydrocarbon-Degrading Bacterial Isolates to Contribute to Soil Fertility

    Science.gov (United States)

    Chirima, George Johannes

    2016-01-01

    Restoration of polycyclic aromatic hydrocarbon- (PAH-) polluted sites is presently a major challenge in agroforestry. Consequently, microorganisms with PAH-degradation ability and soil fertility improvement attributes are sought after in order to achieve sustainable remediation of polluted sites. This study isolated PAH-degrading bacteria from enriched cultures of spent automobile engine-oil polluted soil. Isolates' partial 16S rRNA genes were sequenced and taxonomically classified. Isolates were further screened for their soil fertility attributes such as phosphate solubilization, atmospheric nitrogen fixation, and indoleacetic acid (IAA) production. A total of 44 isolates were obtained and belong to the genera Acinetobacter, Arthrobacter, Bacillus, Flavobacterium, Microbacterium, Ochrobactrum, Pseudomonas, Pseudoxanthomonas, Rhodococcus, and Stenotrophomonas. Data analysed by principal component analysis showed the Bacillus and Ochrobactrum isolates displayed outstanding IAA production. Generalized linear modelling statistical approaches were applied to evaluate the contribution of the four most represented genera (Pseudomonas, Acinetobacter, Arthrobacter, and Rhodococcus) to soil fertility. The Pseudomonas isolates were the most promising in all three soil fertility enhancement traits evaluated and all isolates showed potential for one or more of the attributes evaluated. These findings demonstrate a clear potential of the isolates to participate in restorative bioremediation of polluted soil, which will enhance sustainable agricultural production and environmental protection. PMID:27774456

  19. Hexavalent chromium reduction by aerobic heterotrophic bacteria indigenous to chromite mine overburden

    Directory of Open Access Journals (Sweden)

    Dey Satarupa

    2013-01-01

    Full Text Available Microbiological analysis of overburden samples collected from chromite mining areas of Orissa, India revealed that they are rich in microbial density as well as diversity and dominated by Gramnegative (58% bacteria. The phenotypically distinguishable bacterial isolates (130 showed wide degree of tolerance to chromium (2-8 mM when tested in peptone yeast extract glucose agar medium. Isolates (92 tolerating 2 mM chromium exhibited different degrees of Cr+6 reducing activity in chemically defined Vogel Bonner (VB broth and complex KSC medium. Three potent isolates, two belonging to Arthrobacter spp. and one to Pseudomonas sp. were able to reduce more than 50 and 80% of 2 mM chromium in defined and complex media respectively. Along with Cr+6 (MIC 8.6-17.8 mM, the isolates showed tolerance to Ni+2, Fe+3, Cu+2 and Co+2 but were extremely sensitive to Hg+2 followed by Cd+2, Mn+2 and Zn+2. In addition, they were resistant to antibiotics like penicillin, methicillin, ampicillin, neomycin and polymyxin B. During growth under shake-flask conditions, Arthrobacter SUK 1201 and SUK 1205 showed 100% reduction of 2 mM Cr+6 in KSC medium with simultaneous formation of insoluble precipitates of chromium salts. Both the isolates were also equally capable of completely reducing the Cr+6 present in mine seepage when grown in mine seepage supplemented with VB concentrate.

  20. Potential of Polycyclic Aromatic Hydrocarbon-Degrading Bacterial Isolates to Contribute to Soil Fertility

    Directory of Open Access Journals (Sweden)

    Maryam Bello-Akinosho

    2016-01-01

    Full Text Available Restoration of polycyclic aromatic hydrocarbon- (PAH- polluted sites is presently a major challenge in agroforestry. Consequently, microorganisms with PAH-degradation ability and soil fertility improvement attributes are sought after in order to achieve sustainable remediation of polluted sites. This study isolated PAH-degrading bacteria from enriched cultures of spent automobile engine-oil polluted soil. Isolates’ partial 16S rRNA genes were sequenced and taxonomically classified. Isolates were further screened for their soil fertility attributes such as phosphate solubilization, atmospheric nitrogen fixation, and indoleacetic acid (IAA production. A total of 44 isolates were obtained and belong to the genera Acinetobacter, Arthrobacter, Bacillus, Flavobacterium, Microbacterium, Ochrobactrum, Pseudomonas, Pseudoxanthomonas, Rhodococcus, and Stenotrophomonas. Data analysed by principal component analysis showed the Bacillus and Ochrobactrum isolates displayed outstanding IAA production. Generalized linear modelling statistical approaches were applied to evaluate the contribution of the four most represented genera (Pseudomonas, Acinetobacter, Arthrobacter, and Rhodococcus to soil fertility. The Pseudomonas isolates were the most promising in all three soil fertility enhancement traits evaluated and all isolates showed potential for one or more of the attributes evaluated. These findings demonstrate a clear potential of the isolates to participate in restorative bioremediation of polluted soil, which will enhance sustainable agricultural production and environmental protection.

  1. Reconfirmation of antimicrobial activity in the coelomic fluid of the earthworm Eisenia fetida andrei by colorimetric assay

    Indian Academy of Sciences (India)

    Weidong Pan; Xianghui Liu; Feng Ge; Tao Zheng

    2003-12-01

    A novel tetrazolium salt, 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulphophenyl)-2Htetrazolium (MTS) was used in the assessment of antimicrobial activity in earthworm in the presence of phenazine methosulphate (PMS) as an electron coupling reagent. This activity was purified from the coelomic fluid of the earthworm (ECF), Eisenia fetida andrei (Oligochaeta, Lumbricidae, annelids) using a series of column chromatography techniques and was tested against three Gram-negative strains of Escherichia coli, Pseudomonas aeruginosa, Aeromonas hydrophila and three Gram-positive strains of Staphylococcus aureus, Bacillus megaterium, Arthrobacter sp., respectively. Only the pigment-free eluate of coelomic fluid of the earthworm (ECFPE) showed activity against B. megaterium amongst three isolated active fractions. The anion (DEAE-52) exchange effluent of the ECFPE was reported to have the strongest activity against P. aeruginosa amongst the three active fractions. The 20% acetonitrile eluate (AE) by Sep-Pak C18 cartridge was also tested and showed fair resistance against E. coli, P. aeruginosa and Arthrobacter sp., respectively.

  2. Comparison of the fuel oil biodegradation potential of hydrocarbon-assimilating microorganisms isolated from a temperate agricultural soil

    Energy Technology Data Exchange (ETDEWEB)

    Chaineau, C.H.; Dupont, J.; Bury, E.; Oudot, J. [Museum National d`Histoire Naturelle, Laboratoire de Cryptogamie, 12 rue Buffon, 75005 Paris (France); Morel, J. [Ecole Nationale Superieure d`Agronomie et des Industries Alimentaires de Nancy, Laboratoire Sols et Environnement, INRA, 2 avenue de la Foret de Haye, B.P. 172, F-54505 Vandoeuvre-les-Nancy (France)

    1999-03-09

    Strains of hydrocarbon-degrading microorganisms (bacteria and fungi) were isolated from an agricultural soil in France. In a field, a portion was treated with oily cuttings resulting from the drilling of an onshore well. The cuttings which were spread at the rate of 600 g HC m{sup -2} contained 10% of fuel oil hydrocarbons (HC). Another part of the field was left untreated. Three months after HC spreading, HC adapted bacteria and fungi were isolated at different soil depths in the two plots and identified. The biodegradation potential of the isolated strains was monitored by measuring the degradation rate of total HC, saturated hydrocarbons, aromatic hydrocarbons and resins of the fuel. Bacteria of the genera Pseudomonas, Brevundimonas, Sphingomonas, Acinetobacter, Rhodococcus, Arthrobacter, Corynebacterium and fungi belonging to Aspergillus, Penicillium, Beauveria, Acremonium, Cladosporium, Fusarium, and Trichoderma were identified. The most active strains in the assimilation of saturates and aromatics were Arthrobacter sp., Sphingomonas spiritivorum, Acinetobacter baumanii, Beauveria alba and Penicillum simplicissimum. The biodegradation potential of the hydrocarbon utilizing microorganisms isolated from polluted or unpolluted soils were similar. In laboratory pure cultures, saturated HC were more degraded than aromatic HC, whereas resins were resistant to microbial attack. On an average, individual bacterial strains were more active than fungi in HC biodegradation

  3. mRNA differential display in a microbial enrichment culture: simultaneous identification of three cyclohexanone monooxygenases from three species.

    Science.gov (United States)

    Brzostowicz, Patricia C; Walters, Dana M; Thomas, Stuart M; Nagarajan, Vasantha; Rouvière, Pierre E

    2003-01-01

    mRNA differential display has been used to identify cyclohexanone oxidation genes in a mixed microbial community derived from a wastewater bioreactor. Thirteen DNA fragments randomly amplified from the total RNA of an enrichment subculture exposed to cyclohexanone corresponded to genes predicted to be involved in the degradation of cyclohexanone. Nine of these DNA fragments are part of genes encoding three distinct Baeyer-Villiger cyclohexanone monooxygenases from three different bacterial species present in the enrichment culture. In Arthrobacter sp. strain BP2 and Rhodococcus sp. strain Phi2, the monooxygenase is part of a gene cluster that includes all the genes required for the degradation of cyclohexanone, while in Rhodococcus sp. strain Phi1 the genes surrounding the monooxygenase are not predicted to be involved in this degradation pathway but rather seem to belong to a biosynthetic pathway. Furthermore, in the case of Arthrobacter strain BP2, three other genes flanking the monooxygenase were identified by differential display, demonstrating that the repeated sampling of bacterial operons shown earlier for a pure culture (D. M. Walters, R. Russ, H. Knackmuss, and P. E. Rouvière, Gene 273:305-315, 2001) is also possible for microbial communities. The activity of the three cyclohexanone monooxygenases was confirmed and characterized following their expression in Escherichia coli.

  4. Calcite biomineralization by bacterial isolates from the recently discovered pristine karstic herrenberg cave.

    Science.gov (United States)

    Rusznyák, Anna; Akob, Denise M; Nietzsche, Sándor; Eusterhues, Karin; Totsche, Kai Uwe; Neu, Thomas R; Frosch, Torsten; Popp, Jürgen; Keiner, Robert; Geletneky, Jörn; Katzschmann, Lutz; Schulze, Ernst-Detlef; Küsel, Kirsten

    2012-02-01

    Karstic caves represent one of the most important subterranean carbon storages on Earth and provide windows into the subsurface. The recent discovery of the Herrenberg Cave, Germany, gave us the opportunity to investigate the diversity and potential role of bacteria in carbonate mineral formation. Calcite was the only mineral observed by Raman spectroscopy to precipitate as stalactites from seepage water. Bacterial cells were found on the surface and interior of stalactites by confocal laser scanning microscopy. Proteobacteria dominated the microbial communities inhabiting stalactites, representing more than 70% of total 16S rRNA gene clones. Proteobacteria formed 22 to 34% of the detected communities in fluvial sediments, and a large fraction of these bacteria were also metabolically active. A total of 9 isolates, belonging to the genera Arthrobacter, Flavobacterium, Pseudomonas, Rhodococcus, Serratia, and Stenotrophomonas, grew on alkaline carbonate-precipitating medium. Two cultures with the most intense precipitate formation, Arthrobacter sulfonivorans and Rhodococcus globerulus, grew as aggregates, produced extracellular polymeric substances (EPS), and formed mixtures of calcite, vaterite, and monohydrocalcite. R. globerulus formed idiomorphous crystals with rhombohedral morphology, whereas A. sulfonivorans formed xenomorphous globular crystals, evidence for taxon-specific crystal morphologies. The results of this study highlighted the importance of combining various techniques in order to understand the geomicrobiology of karstic caves, but further studies are needed to determine whether the mineralogical biosignatures found in nutrient-rich media can also be found in oligotrophic caves.

  5. Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria.

    Science.gov (United States)

    Russell, Joseph A; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F

    2016-01-01

    Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.

  6. Isolation of plant-growth-promoting rhizobacteria from rhizospheric soil of halophytes and their impact on maize (Zea mays L.) under induced soil salinity.

    Science.gov (United States)

    Ullah, Sami; Bano, Asghari

    2015-04-01

    The present investigation was aimed to scrutinize the salt tolerance potential of plant-growth-promoting rhizobacteria (PGPR) isolated from rhizospheric soil of selected halophytes (Atriplex leucoclada, Haloxylon salicornicum, Lespedeza bicolor, Suaeda fruticosa, and Salicornica virginica) collected from high-saline fields (electrical conductivity 4.3-5.5) of District Mardan, Pakistan. Five PGPR strains were identified using 16S rRNA amplification and sequence analysis. Bacillus sp., isolated from rhizospheric soil of Atriplex leucoclada, and Arthrobacter pascens, isolated from rhizospheric soil of Suaeda fruticosa, are active phosphate solubilizers and bacteriocin and siderophore producers; hence, their inoculation and co-inoculation on maize ('Rakaposhi') under induced salinity stress enhanced shoot and root length and shoot and root fresh and dry mass. The accumulation of osmolytes, including sugar and proline, and the elevation of antioxidant enzymes activity, including superoxide dismutase, peroxidase, catalase, and ascorbate peroxidase, were enhanced in the maize variety when inoculated and co-inoculated with Bacillus sp. and Arthrobacter pascens. The PGPR (Bacillus sp. and A. pascens) isolated from the rhizosphere of the mentioned halophytes species showed reliability in growth promotion of maize crop in all the physiological parameters; hence, they can be used as bio-inoculants for the plants growing under salt stress.

  7. UV-Resistant Non-Spore-Forming Bacteria From Spacecraft-Assembly Facilities

    Science.gov (United States)

    Venkateswaran, Kasthuri

    2008-01-01

    Four species of non-spore-forming bacteria collected from clean-room surfaces in spacecraft-assembly facilities could survive doses of ultraviolet (UV) radiation that would suffice to kill most known cultivable bacterial species. In a previous study, high UV resistance was found in spores of the SAFR-032 strain of Bacillus pumilus, as reported in "Ultraviolet- Resistant Bacterial Spores," NASA Tech Briefs, Vol. 31, No. 9 (September 2007), page 94. These studies are parts of a continuing effort to understand the survival of hardy species of bacteria under harsh conditions, and develop means of sterilizing spacecraft to prevent biocontamination of Mars that could in turn interfere with future life detection missions. The four species investigated were Arthrobacter sp. KSC_Ak2i, Microbacterium schleiferi LMA_AkK1, Brevundimonas diminuta KSC_Ak3a, and Sphingomonas trueperi JSC_Ak7-3. In the study, cells of these species were mixed into Atacama Desert soil (to elucidate the shadowing effect of soil particles) and the resulting mixtures were tested both in solution and in a desiccated state under simulated Martian atmospheric and UV conditions. The UV-survival indices of Arthrobacter sp. and Microbacterium schleiferi were found to be comparable to those of Bacillus pumilus spores.

  8. 锰氧化细菌的分离鉴定及其锰氧化特性的分析%Isolation and identification of manganese-oxidizing bacterium and its manganes-oxidation characteristics

    Institute of Scientific and Technical Information of China (English)

    张璐; 李婷婷; 王芳; 许旭萍

    2011-01-01

    The selective media were used to isolate and screen the manganese-oxidizing bacteria. A high efficiency manganese-oxidizing bacterium (MN1405) was selected from manganese ores. According to the morphological features, physiological and biochemical characteristics and the sequence analysis of 16S rRNA gene, MN1405 was identified as Arthrobacter echigonensis. Under the cultural conditions,the manganese removal rate in the medium by MN1405 was reached 93.38%. The culture that was obtained from the bacterium also had a good manganese removal effects.%利用选择性培养基对锰矿样品进行分离、筛选,得到一株高效锰氧化细菌(MN1405).经形态特征、生理生化特征以及16S rRNA基因序列分析,将菌株MN1405鉴定为Arthrobacter echigonensis.在培养条件下,MN1405对培养基中的锰离子去除率可达93.38%,且其培养所获得的培养液也具有良好的除锰效果.

  9. Comparison of the fuel oil biodegradation potential of hydrocarbon-assimilating microorganisms isolated from a temperate agricultural soil

    Energy Technology Data Exchange (ETDEWEB)

    Chaineau, C.H.; Dupont, J.; Bury, E.; Oudot, J. [Museum National d' Histoire Naturelle, Laboratoire de Cryptogamie, 12 rue Buffon, 75005 Paris (France); Morel, J. [Ecole Nationale Superieure d' Agronomie et des Industries Alimentaires de Nancy, Laboratoire Sols et Environnement, INRA, 2 avenue de la Foret de Haye, B.P. 172, F-54505 Vandoeuvre-les-Nancy (France)

    1999-03-09

    Strains of hydrocarbon-degrading microorganisms (bacteria and fungi) were isolated from an agricultural soil in France. In a field, a portion was treated with oily cuttings resulting from the drilling of an onshore well. The cuttings which were spread at the rate of 600 g HC m{sup -2} contained 10% of fuel oil hydrocarbons (HC). Another part of the field was left untreated. Three months after HC spreading, HC adapted bacteria and fungi were isolated at different soil depths in the two plots and identified. The biodegradation potential of the isolated strains was monitored by measuring the degradation rate of total HC, saturated hydrocarbons, aromatic hydrocarbons and resins of the fuel. Bacteria of the genera Pseudomonas, Brevundimonas, Sphingomonas, Acinetobacter, Rhodococcus, Arthrobacter, Corynebacterium and fungi belonging to Aspergillus, Penicillium, Beauveria, Acremonium, Cladosporium, Fusarium, and Trichoderma were identified. The most active strains in the assimilation of saturates and aromatics were Arthrobacter sp., Sphingomonas spiritivorum, Acinetobacter baumanii, Beauveria alba and Penicillum simplicissimum. The biodegradation potential of the hydrocarbon utilizing microorganisms isolated from polluted or unpolluted soils were similar. In laboratory pure cultures, saturated HC were more degraded than aromatic HC, whereas resins were resistant to microbial attack. On an average, individual bacterial strains were more active than fungi in HC biodegradation. (Copyright (c) 1999 Elsevier Science B.V., Amsterdam. All rights reserved.)

  10. Isolation and Preliminary Identification of Oil-Degrading Microorganism%高效石油降解菌的筛选及初步鉴定

    Institute of Scientific and Technical Information of China (English)

    王伟平; 李伟; 邱雁临; 张华山; 彭晓斌

    2009-01-01

    Nine strains which could degrade crude oil efficiently were isolated from oil-containing soil or water of Jianghan Oil Field and Jidong Oil Field,and were screened on the plates and flasks respectively in the selective medium with oil as sole carbon source. The results showed that three bacteria (X-1,X-2,X-3) had relatively high capacity of oil degradation and the best one was strain X-1,with degradation rate of oil as high as 64.28%.It was belong to Arthrobacter sp. by preliminary identification through configuration observation and physiological and biochemical characteristics.%经过以石油烃为唯一碳源的选择性培养基平板初筛和三角瓶发酵复筛,采用紫外分光光度法测定石油降解率,从江汉油田和冀东油田石油污染的土壤和水体中,筛选出有降解石油能力的微生物9株.其中3株细菌(X-1,X-2,X-3)降解石油能力较高,X-1菌株的石油降解率最高达64.28%.根据形态学观察和部分生理生化特征初步鉴定,该菌为节杆菌属(Arthrobacter sp.).

  11. Selection and identification of bacterial strains with methyl-tert-butyl ether, ethyl-tert-butyl ether, and tert-amyl methyl ether degrading capacities.

    Science.gov (United States)

    Purswani, Jessica; Pozo, Clementina; Rodríguez-Díaz, Marina; González-López, Jesús

    2008-11-01

    Nine bacterial strains isolated from two hydrocarbon-contaminated soils were selected because of their capacity for growth in culture media amended with 200 mg/L of one of the following gasoline oxygenates: Methyl-tert-butyl ether (MTBE), ethyl-tert-butyl ether (ETBE), and tert-amyl methyl ether (TAME). These strains were identified by amplification of their 16S rRNA gene, using fDl and rD1 primers, and were tested for their capacity to grow and biotransform these oxygenates in both mineral and cometabolic media. The isolates were classified as Bacillus simplex, Bacillus drentensis, Arthrobacter sp., Acinetobacter calcoaceticus, Acinetobacter sp., Gordonia amicalis (two strains), Nocardioides sp., and Rhodococcus ruber. Arthrobacter sp. (strain MG) and A. calcoaceticus (strain M10) consumed 100 (cometabolic medium) and 82 mg/L (mineral medium) of oxygenate TAME in 21 d, respectively, under aerobic conditions. Rhodococcus ruber (strain E10) was observed to use MTBE and ETBE as the sole carbon and energy source, whereas G. amicalis (strain T3) used TAME as the sole carbon and energy source for growth. All the bacterial strains transformed oxygenates better in the presence of an alternative carbon source (ethanol) with the exception of A. calcoaceticus (strain M10). The capacity of the selected strains to remove MTBE, ETBE, and TAME looks promising for application in bioremediation technologies.

  12. Ecological interactions between metals and microbes that impact bioremediation

    Energy Technology Data Exchange (ETDEWEB)

    Allan Konopka; Cindy Nakatsu

    2004-03-17

    Distinct microbial communities had been found in contaminated soils that varied in their concentrations of Pb, Cr and aromatic compounds. It is difficult to distinguish between their effects as their presence is highly correlated. Microcosms were constructed in which either Pb{sup +2} or CrO{sub 4}{sup -2} was added at levels that produced acute modest or severe acute effects (50 or 90% reduction). We previously reported on changes in microbial activity and broad patterns of Bacterial community composition. These results showed that addition of an organic energy source selected for a relatively small number of phylotypes and the addition of Pb or Cr(VI) modulated the community response. We sequenced dominant phylotypes from microcosms amended with xylene and Cr(VI) and from those with the simple addition of glucose only. In both cases, the dominant selected phylotypes were diverse. We found a number of distinct Arthrobacter strains, as well as several Pseudomonas spp. In addition, the high GC-content bands belonged to members of the genera Nocardioides and Rhodococcus. The focus of amended microcosm work has now shifted to anaerobic processes. The reduction of Cr(VI) to Cr(III) as a detoxification mechanism is of greater interest, as is the specific role of particular physiological groups of anaerobes in mediating Cr(VI) detoxification. The correlation between microbial activity, community structure, and metal level has been analyzed on 150 mg of soil collected at spatial scales <1, 5, 15 and 50 cm. There was no correlation between metal content and activity level. Soils <1 cm apart could differ in activity 10-fold and extractable Pb and Cr 7-fold. Therefore, we turned to geostatistical analysis. There was spatial periodicity which is likely to reflect the heterogeneous distribution of active microbes and metal contaminants. Variograms indicated that the range of spatial dependence was up to 20 cm. To visualize the spatial relationships between the primary variate

  13. Effects of Radiofrequency Ablation on Lymphocyte Subsets and Type 1/Type 2 T Cell Subpopulations in Patients with Hepatocellular Carcinoma

    Institute of Scientific and Technical Information of China (English)

    Yan-bin Wang; Wei-Guo Xu; He-liang Liu; Kun Yan; Lin Ma; Wan-hou Guo

    2009-01-01

    Objective: To evaluate whether radiofrequency ablation (RFA) might have an influence on immune status in hepatocellular carcinoma (HCC) patients. Methods: We measured the T lymphocytes, B lymphocyte and NK cells, and determined the population of Th1, Th2, Tc1 and Tc2 of peripheral blood samples taken from 26 HCC patients before and after RFA. Results: The proportion of Type1 cells (Th1 and Tc1) and NK cells were significantly increased after RFA, especially in patients of the following subgroups: male, age>55 years, pathological grade I-II tumor, clinical stage I-II or Child-Pugh A and B. Conclusion: Type1 cells and NK cells in HCC patients were increased in a short period after RFA.

  14. Superconductivity in carrier-doped silicon carbide

    Directory of Open Access Journals (Sweden)

    Takahiro Muranaka, Yoshitake Kikuchi, Taku Yoshizawa, Naoki Shirakawa and Jun Akimitsu

    2008-01-01

    Full Text Available We report growth and characterization of heavily boron-doped 3C-SiC and 6H-SiC and Al-doped 3C-SiC. Both 3C-SiC:B and 6H-SiC:B reveal type-I superconductivity with a critical temperature Tc=1.5 K. On the other hand, Al-doped 3C-SiC (3C-SiC:Al shows type-II superconductivity with Tc=1.4 K. Both SiC:Al and SiC:B exhibit zero resistivity and diamagnetic susceptibility below Tc with effective hole-carrier concentration n higher than 1020 cm−3. We interpret the different superconducting behavior in carrier-doped p-type semiconductors SiC:Al, SiC:B, Si:B and C:B in terms of the different ionization energies of their acceptors.

  15. Coordinated Cluster/Double Star observations of dayside flux transfer events on 6 April 2004

    Institute of Scientific and Technical Information of China (English)

    Malcom; W.; DUNLOP

    2008-01-01

    With the Double Star Program TC1 in the equatorial orbit and Cluster tetrahedron in the high latitude polar orbit, a conjunct observation of FTEs on the dayside magnetopause (MP) on April 6, 2004 is presented in this study. The FTEs observed by TC1 at low latitudes are characterized to be generated in the subsolar region and the obtained flux tube axes orientate along the predicted low latitude component magnetic reconnection X-line, indicating that these FTEs were more likely to be generated through multiple X-line reconnection or single X-line bursty reconnec-tion. During the same period, Cluster also encountered a series of magnetosheath FTEs with their axes pointing roughly along the interplanetary magnetic field. At last, the global FTE configuration is obtained from observations in different loca-tions, which is in good agreement with the "elbow shape" model.

  16. Matrix metalloproteinase (MMP-9 in cancer-associated fibroblasts (CAFs is suppressed by omega-3 polyunsaturated fatty acids in vitro and in vivo.

    Directory of Open Access Journals (Sweden)

    Ayumi Taguchi

    Full Text Available Cancer associated fibroblasts (CAFs are responsible for tumor growth, angiogenesis, invasion, and metastasis. Matrix metalloproteinase (MMP-9 secreted from cancer stroma populated by CAFs is a prerequisite for cancer angiogenesis and metastasis. Omega-3 polyunsaturated fatty acids (omega-3 PUFA have been reported to have anti-tumor effects on diverse types of malignancies. Fat-1 mice, which can convert omega-6 to omega-3 PUFA independent of diet, are useful to investigate the functions of endogenous omega-3 PUFA. To examine the effect of omega-3 PUFA on tumorigenesis, TC-1 cells, a murine epithelial cell line immortalized by human papillomavirus (HPV oncogenes, were injected subcutaneously into fat-1 or wild type mice. Tumor growth and angiogenesis of the TC-1 tumor were significantly suppressed in fat-1 compared to wild type mice. cDNA microarray of the tumors derived from fat-1 and wild type mice revealed that MMP-9 is downregulated in fat-1 mice. Immunohistochemical study demonstrated immunoreactivity for MMP-9 in the tumor stromal fibroblasts was diffusely positive in wild type whereas focal in fat-1 mice. MMP-9 was expressed in primary cultured fibroblasts isolated from fat-1 and wild type mice but was not expressed in TC-1 cells. Co-culture of fibroblasts with TC-1 cells enhanced the expression and the proteinase activity of MMP-9, although the protease activity of MMP-9 in fat-1-derived fibroblasts was lower than that in wild type fibroblasts. Our data suggests that omega-3 PUFAs suppress MMP-9 induction and tumor angiogenesis. These findings may provide insight into mechanisms by which omega-3 PUFAs exert anti-tumor effects by modulating tumor microenvironment.

  17. Thérapie cellulaire de l'angiogenèse tumorale : évaluation par imagerie morphologique et fonctionnelle en IRM et vidéomicroscopie de fluorescence

    OpenAIRE

    Faye, Nathalie

    2011-01-01

    Introduction : Tumor angiogenesis leads to the development of new vessels enabling the growth of the tumor. Tumor vessels are characterized by abnormalities including mural cells (perivascular muscular cells) responsible for abnormal vessel function and maturation. In this thesis, we studied cellular therapy in a tumor model by injection of mural cells using MRI and fluorescence videomicroscopy. Materiels and methods: Nude mice were injected with squamous cell TC1 tumors and animals were divi...

  18. Cellular therapy of tumor angiogenesis : morphological and functional imaging using MRI and videomicroscopy

    OpenAIRE

    Faye, Nathalie

    2011-01-01

    Introduction : Tumor angiogenesis leads to the development of new vessels enabling the growth of the tumor. Tumor vessels are characterized by abnormalities including mural cells (perivascular muscular cells) responsible for abnormal vessel function and maturation. In this thesis, we studied cellular therapy in a tumor model by injection of mural cells using MRI and fluorescence videomicroscopy. Materiels and methods: Nude mice were injected with squamous cell TC1 tumors and animals were divi...

  19. 激光重熔WC复合陶瓷涂层组织及耐腐蚀性能%Ceramic Coating of WC-Co-NiCrAl/Laser-Remelting Microstructure and Corrosion Characteristics

    Institute of Scientific and Technical Information of China (English)

    花国然; 龚晓燕; 居志兰; 田宗军; 赵剑峰; 黄因慧

    2010-01-01

    在45号钢表面,制备了WC/Co-NiCrAl等离子喷涂涂层(TC-1)和WC/Co-NiCrAl/laser-remelting激光直接重熔等离子喷涂陶瓷涂层(TC-2).以纳米SiC粉末为填料,对等离子喷涂层TC-1进行了填料下的激光重熔,制备了纳米SiC改性的WC/Co-NiCrAl/nano-SiC复合陶瓷涂层(TC-3).采用X射线衍射、扫描电镜对三种涂层微观组织进行了分析,同时对陶瓷涂层的耐腐蚀性能进行了研究.结果表明,TC-1涂层由WC,W2C,W6C2.54,W,Co,CoO组成; TC-2重熔涂层由WC,W2C,CoO及W组成;纳米改性后的重熔涂层TC-3由SiC,Si2W,WC,W及CoO组成.在激光作用下,原等离子喷涂层WC/Co的片层状组织得以消除.与TC-1涂层相比,TC-2及TC-3陶瓷涂层致密化程度明显提高,涂层耐腐蚀性能也得到了明显的改善.

  20. A Brief Introduction and Recent Progress of the Geospace Double Star Program

    Institute of Scientific and Technical Information of China (English)

    LIU Zhenxing; CAO Jinbin

    2004-01-01

    The Geospace Double Star Project (DSP) consists of two small satellites operating in the near-earth equatorial and polar regions, respectively. The goals of DSP are: (1) to provide high-resolution field, particle, and wave measurements in some important near-earth active regions which have not been covered by current ISTP missions, such as the near-earth plasma sheet and its boundary layer, the ring current, the radiation belts, the dayside magnetopause boundary layer, and the polar region; (2) to investigate the trigger mechanisms of magnetic storms, magnetospheric substorms, and magnetospheric particle events,as well as the responses of geospace storms to solar activities and interplanetary disturbances; (3) to set up the models describing the spatial and temporal variations of the near-earth space environment.To realize the above goals, the equatorial satellite TC-1 and the polar satellite TC-2 will accommodate, respectively, eight instruments on board. TC-1was launched successfully in December 2003 while the polar satellite (TC-2)will be launched in July 2004. The orbit of the equatorial satellite TC-1 consists of a perigee at 550 km, an apogee at 60 000 km, and an inclination of about 28.5; while the orbit of the polar satellite will have a perigee of 700 km, an apogee of 40 000 km, and an inclination of about 90. The two satellites will take coordinated measurements with Cluster Ⅱ and will first form a "six-point exploration" in geospace.The operational status of TC-1 are introduced in this paper.

  1. Theory and Use of Conditional Composition

    Science.gov (United States)

    1994-07-01

    oxds[Wc*dHpo|d@[!\\ dsiM \\tc1d@`n\\oWd:f*_Dd@[_k d@[\\pi]M\\9`cIoWdsp>r.]BcIoWexds[!\\piEr_i i\\trIdso!\\] ]0bG\\ ctiM\\ r_ok@i_oWd>\\wexbHpCd...person shall be subject to a penalty for failing to comply with a collection of information if it does not display a currently valid OMB control

  2. Effects of traffic control on the soil physical quality and the cultivation of sugarcane

    Directory of Open Access Journals (Sweden)

    Gustavo Soares de Souza

    2014-02-01

    Full Text Available The cultivation of sugarcane with intensive use of machinery, especially for harvest, induces soil compaction, affecting the crop development. The control of agricultural traffic is an alternative of management in the sector, with a view to preserve the soil physical quality, resulting in increased sugarcane root growth, productivity and technological quality. The objective of this study was to evaluate the physical quality of an Oxisol with and without control traffic and the resulting effects on sugarcane root development, productivity and technological quality. The following managements were tested: no traffic control (NTC, traffic control consisting of an adjustment of the track width of the tractor and sugarcane trailer (TC1 and traffic control consisting of an adjustment of the track width of the tractor and trailer and use of an autopilot (TC2. Soil samples were collected (layers 0.00-0.10; 0.10-0.20 and 0.20-0.30 m in the plant rows, inter-row center and seedbed region, 0.30 m away from the plant row. The productivity was measured with a specific weighing scale. The technological variables of sugarcane were measured in each plot. Soil cores were collected to analyze the root system. In TC2, the soil bulk density and compaction degree were lowest and total porosity and macroporosity highest in the plant row. Soil penetration resistance in the plant row, was less than 2 MPa in TC1 and TC2. Soil aggregation and total organic carbon did not differ between the management systems. The root surface and volume were increased in TC1 and TC2, with higher productivity and sugar yield than under NTC. The sugarcane variables did not differ between the managements. The soil physical quality in the plant row was preserved under management TC1 and TC2, with an improved root development and increases of 18.72 and 20.29 % in productivity and sugar yield, respectively.

  3. In vitro reprogramming of pancreatic alpha cells towards a beta cell phenotype following ectopic HNF4α expression.

    Science.gov (United States)

    Sangan, Caroline B; Jover, Ramiro; Heimberg, Harry; Tosh, David

    2015-01-05

    There is currently a shortage of organ donors available for pancreatic beta cell transplantation into diabetic patients. An alternative source of beta cells is pre-existing pancreatic cells. While we know that beta cells can arise directly from alpha cells during pancreatic regeneration we do not understand the molecular basis for the switch in phenotype. The aim of the present study was to investigate if hepatocyte nuclear factor 4 alpha (HNF4α), a transcription factor essential for a normal beta cell phenotype, could induce the reprogramming of alpha cells towards potential beta cells. We utilised an in vitro model of pancreatic alpha cells, the murine αTC1-9 cell line. We initially characterised the αTC1-9 cell line before and following adenovirus-mediated ectopic expression of HNF4α. We analysed the phenotype at transcript and protein level and assessed its glucose-responsiveness. Ectopic HNF4α expression in the αTC1-9 cell line induced a change in morphology (1.7-fold increase in size), suppressed glucagon expression, induced key beta cell-specific markers (insulin, C-peptide, glucokinase, GLUT2 and Pax4) and pancreatic polypeptide (PP) and enabled the cells to secrete insulin in a glucose-regulated manner. In conclusion, HNF4α reprograms alpha cells to beta-like cells.

  4. Cluster and Double Star observations of dipolarization

    Directory of Open Access Journals (Sweden)

    R. Nakamura

    2005-11-01

    Full Text Available We studied two types of dipolarization events with different IMF conditions when Cluster and Double Star (TC-1 were located in the same local time sector: 7 August 2004, 18:00-24:00 UT, during a disturbed southward/northward IMF interval, and 14 August 2004, 21:00-24:00 UT, when the IMF was stably northward. Cluster observed dipolarization as well as fast flows during both intervals, but this was not the case for TC-1. For both events the satellites crossed near the conjugate location of the MIRACLE stations. By using multi-point analysis techniques, the direction/speed of the propagation is determined using Cluster and is then compared with the disturbances at TC-1 to discuss its spatial/temporal scale. The propagation direction of the BZ disturbance at Cluster was mainly dawnward with a tailward component for 7 August and with a significant Earthward component for 14 August associated with fast flows. We suggest that the role of the midtail fast flows can be quite different in the dissipation process depending on the condition of the IMF and resultant configuration of the tail.

  5. NADH oxidase-dependent CD39 expression by CD8(+) T cells modulates interferon gamma responses via generation of adenosine.

    Science.gov (United States)

    Bai, Aiping; Moss, Alan; Rothweiler, Sonja; Longhi, Maria Serena; Wu, Yan; Junger, Wolfgang G; Robson, Simon C

    2015-11-09

    Interferon gamma (IFNγ)-producing CD8(+) T cells (Tc1) play important roles in immunological disease. We now report that CD3/CD28-mediated stimulation of CD8(+) T cells to generate Tc1 cells, not only increases IFNγ production but also boosts the generation of reactive oxygen species (ROS) and augments expression of CD39. Inhibition of NADPH oxidases or knockdown of gp91phox in CD8(+) T cells abrogates ROS generation, which in turn modulates JNK and NFκB signalling with decreases in both IFNγ levels and CD39 expression. CD39(+)CD8(+) T cells substantially inhibit IFNγ production by CD39(-)CD8(+) T cells via the paracrine generation of adenosine, which is operational via adenosine type 2A receptors. Increases in numbers of CD39(+)CD8(+) T cells and associated enhancements in ROS signal transduction are noted in cells from patients with Crohn's disease. Our findings provide insights into Tc1-mediated IFNγ responses and ROS generation and link these pathways to CD39/adenosine-mediated effects in immunological disease.

  6. β-Galactoside-mediated tissue organization during islet reconstitution

    Directory of Open Access Journals (Sweden)

    Sae Kamitori

    2016-03-01

    Full Text Available We have previously reported that multi-cellular heteroaggregates comprising murine pancreatic α (αTC1.6 and β (MIN6-m9 cell lines spontaneously acquired islet-like architecture and displayed higher insulin secretion rates. However, the mechanisms of self-organization remain unclear. The objective of this study is to examine the possibility that a sugar chain participates in the mutual recognition of the cells during reconstitution of the islet-like structure in vitro. Using a lectin-binding assay, we identified Erythrina cristagalli agglutinin (ECA, which particularly recognizes the β-galactoside structure on the surfaces of MIN6-m9 cells. The self-organization of αTC1.6 and MIN6-m9 was obstructed using ECA-bound MIN6-m9 cells. Lactose neutralized the ECA's inhibitory effect on the autonomous rearrangement of αTC1.6 and MIN6-m9 cells, indicating that the inhibition of cell arrangement by ECA was mediated via β-galactoside. We concluded that a β-galactoside sugar chain was central to the reconstitution of the pancreatic islet-like architecture in vitro.

  7. Bonzo/CXCR6 expression defines type 1–polarized T-cell subsets with extralymphoid tissue homing potential

    Science.gov (United States)

    Kim, Chang H.; Kunkel, Eric J.; Boisvert, Judie; Johnston, Brent; Campbell, James J.; Genovese, Mark C.; Greenberg, Harry B.; Butcher, Eugene C.

    2001-01-01

    Chemokine receptor expression is finely controlled during T-cell development. We show that newly identified chemokine receptor Bonzo/CXCR6 is expressed by subsets of Th1 or T-cytotoxic 1 (Tc1) cells, but not by Th2 or Tc2 cells, establishing Bonzo as a differential marker of polarized type 1 T cells in vitro and in vivo. Priming of naive T cells by dendritic cells induces expression of Bonzo on T cells. IL-12 enhances this dendritic cell–dependent upregulation, while IL-4 inhibits it. In blood, 35–56% of Bonzo+ CD4 T cells are Th1 cells, and 60–65% of Bonzo+ CD8 T cells are Tc1 cells, while few Bonzo+ cells are type 2 T cells. Almost all Bonzo+ Tc1 cells contain preformed granzyme A and display cytotoxic effector phenotype. Most Bonzo+ T cells lack L-selectin and/or CCR7, homing receptors for lymphoid tissues. Instead, Bonzo+ T cells are dramatically enriched among T cells in tissue sites of inflammation, such as rheumatoid joints and inflamed livers. Bonzo may be important in trafficking of effector T cells that mediate type 1 inflammation, making it a potential target for therapeutic modulation of inflammatory diseases. PMID:11238560

  8. A search of diffuse bands in fullerene planetary nebulae: evidence for diffuse circumstellar bands

    CERN Document Server

    Diaz-Luis, J J; Rao, N Kameswara; Manchado, A; Cataldo, F

    2014-01-01

    Large fullerenes and fullerene-based molecules have been proposed as carriers of diffuse interstellar bands (DIBs). The recent detection of the most common fullerenes (C60 and C70) around some Planetary Nebulae (PNe) now enable us to study the DIBs towards fullerene-rich space environments. We search DIBs in the optical spectra towards three fullerene-containing PNe (Tc 1, M 1-20, and IC 418). Special attention is given to DIBs which are found to be unusually intense towards these fullerene sources. In particular, an unusually strong 4428A absorption feature is a common charateristic to fullerene PNe. Similarly to Tc 1, the strongest optical bands of neutral C60 are not detected towards IC 418. Our high-quality (S/N > 300) spectra for PN Tc 1 together with its large radial velocity permits us to search for the presence of diffuse bands of circumstellar origin which we refer to as diffuse circumstellar bands (DCBs). We report the first tentative detection of two DCBs at 4428 and 5780 A in the fullerene-rich ci...

  9. Induction of cell death by ascorbic acid derivatives in human renal carcinoma and glioblastoma cell lines.

    Science.gov (United States)

    Makino, Y; Sakagami, H; Takeda, M

    1999-01-01

    Sodium-L-ascorbate, L-ascorbic acid, D-isoascorbic acid, sodium 5,6-benzylidene-L-ascorbate and sodium-6-beta-O-galactosyl-L-ascorbate, which produce ascorbyl radicals during the oxidative degradation, also induced cytotoxicity against cultured human renal carcinoma (TC-1) and glioblastoma multiform tumor (T98G) cell lines. On the other hand, L-ascorbic acid 2-phosphate magnesium and L-ascorbic acid 2-sulfate dipotassium salt, which do not produce the ascorbyl radical, were inactive. This suggests the possible role of the ascorbyl radical for cell death induction. T98G cells were more resistant to ascorbate analogs than TC-1 and HL-60 cells, possibly due to higher intracellular glutathione concentrations. Ascorbate treatment induced rapid elevation of both intracellular concentration of cAMP and Ca2+ in HL-60 cells, but not in TC-1 and T98G cells. However, the elevation of cAMP by theophyline and N,2-dibutyryl adenosine 3,5 cyclic monophosphate (dibutyryl cAMP) resulted in a decrease in the viable cell number. This suggests the possible role of cAMP for ascorbate-induced cell death.

  10. Epigenetic regulations in the IFNγ signalling pathway: IFNγ-mediated MHC class I upregulation on tumour cells is associated with DNA demethylation of antigen-presenting machinery genes.

    Science.gov (United States)

    Vlková, Veronika; Štěpánek, Ivan; Hrušková, Veronika; Šenigl, Filip; Mayerová, Veronika; Šrámek, Martin; Šímová, Jana; Bieblová, Jana; Indrová, Marie; Hejhal, Tomáš; Dérian, Nicolas; Klatzmann, David; Six, Adrien; Reiniš, Milan

    2014-08-30

    Downregulation of MHC class I expression on tumour cells, a common mechanism by which tumour cells can escape from specific immune responses, can be associated with coordinated silencing of antigen-presenting machinery genes. The expression of these genes can be restored by IFNγ. In this study we documented association of DNA demethylation of selected antigen-presenting machinery genes located in the MHC genomic locus (TAP-1, TAP-2, LMP-2, LMP-7) upon IFNγ treatment with MHC class I upregulation on tumour cells in several MHC class I-deficient murine tumour cell lines (TC-1/A9, TRAMP-C2, MK16 and MC15). Our data also documented higher methylation levels in these genes in TC-1/A9 cells, as compared to their parental MHC class I-positive TC-1 cells. IFNγ-mediated DNA demethylation was relatively fast in comparison with demethylation induced by DNA methyltransferase inhibitor 5-azacytidine, and associated with increased histone H3 acetylation in the promoter regions of APM genes. Comparative transcriptome analysis in distinct MHC class I-deficient cell lines upon their treatment with either IFNγ or epigenetic agents revealed that a set of genes, significantly enriched for the antigen presentation pathway, was regulated in the same manner. Our data demonstrate that IFNγ acts as an epigenetic modifier when upregulating the expression of antigen-presenting machinery genes.

  11. The STAFF-DWP wave instrument on the DSP equatorial spacecraft: description and first results

    Directory of Open Access Journals (Sweden)

    N. Cornilleau-Wehrlin

    2005-11-01

    Full Text Available The STAFF-DWP wave instrument on board the equatorial spacecraft (TC1 of the Double Star Project consists of a combination of 2 instruments which are a heritage of the Cluster mission: the Spatio-Temporal Analysis of Field Fluctuations (STAFF experiment and the Digital Wave-Processing experiment (DWP. On DSP-TC1 STAFF consists of a three-axis search coil magnetometer, used to measure magnetic fluctuations at frequencies up to 4 kHz and a waveform unit, up to 10 Hz, plus snapshots up to 180 Hz. DWP provides several onboard analysis tools: a complex FFT to fully characterise electromagnetic waves in the frequency range 10 Hz-4 kHz, a particle correlator linked to the PEACE electron experiment, and compression of the STAFF waveform data. The complementary Cluster and TC1 orbits, together with the similarity of the instruments, permits new multi-point studies. The first results show the capabilities of the experiment, with examples in the different regions of the magnetosphere-solar wind system that have been encountered by DSP-TC1 at the beginning of its operational phase. An overview of the different kinds of electromagnetic waves observed on the dayside from perigee to apogee is given, including the different whistler mode waves (hiss, chorus, lion roars and broad-band ULF emissions. The polarisation and propagation characteristics of intense waves in the vicinity of a bow shock crossing are analysed using the dedicated PRASSADCO tool, giving results compatible with previous studies: the broad-band ULF waves consist of a superimposition of different wave modes, whereas the magnetosheath lion roars are right-handed and propagate close to the magnetic field. An example of a combined Cluster DSP-TC1 magnetopause crossing is given. This first case study shows that the ULF wave power intensity is higher at low latitude (DSP than at high latitude (Cluster. On the nightside in the tail, a first wave event comparison - in a rather quiet time interval

  12. Immunoprecipitation of native botulinum neurotoxin complexes from Clostridium botulinum subtype A strains.

    Science.gov (United States)

    Lin, Guangyun; Tepp, William H; Bradshaw, Marite; Fredrick, Chase M; Johnson, Eric A

    2015-01-01

    Botulinum neurotoxins (BoNTs) naturally exist as components of protein complexes containing nontoxic proteins. The nontoxic proteins impart stability of BoNTs in the gastrointestinal tract and during purification and handling. The two primary neurotoxin complexes (TCs) are (i) TC1, consisting of BoNT, nontoxin-nonhemagglutinin (NTNH), and hemagglutinins (HAs), and (ii) TC2, consisting of BoNT and NTNH (and possibly OrfX proteins). In this study, BoNT/A subtypes A1, A2, A3, and A5 were examined for the compositions of their TCs in culture extracts using immunoprecipitation (IP). IP analyses showed that BoNT/A1 and BoNT/A5 form TC1s, while BoNT/A2 and BoNT/A3 form TC2s. A Clostridium botulinum host strain expressing recombinant BoNT/A4 (normally present as a TC2) from an extrachromosomal plasmid formed a TC1 with complexing proteins from the host strain, indicating that the HAs and NTNH encoded on the chromosome associated with the plasmid-encoded BoNT/A4. Strain NCTC 2916 (A1/silent B1), which carries both an ha silent bont/b cluster and an orfX bont/a1 cluster, was also examined. IP analysis revealed that NCTC 2916 formed only a TC2 containing BoNT/A1 and its associated NTNH. No association between BoNT/A1 and the nontoxic proteins from the silent bont/b cluster was detected, although the HAs were expressed as determined by Western blotting analysis. Additionally, NTNH and HAs from the silent bont/b cluster did not form a complex in NCTC 2916. The stabilities of the two types of TC differed at various pHs and with addition of KCl and NaCl. TC1 complexes were more stable than TC2 complexes. Mouse serum stabilized TC2, while TC1 was unaffected.

  13. Investigation on Microbial Dissolution of Uranium (VI) from Autunite Mineral - 13421

    Energy Technology Data Exchange (ETDEWEB)

    Sepulveda, Paola; Katsenovich, Yelena; Lagos, Leonel [Applied Research Center, Florida International University. 10555 West Flagler St. Suite 2100, Miami Fl 33175 (United States)

    2013-07-01

    Precipitating autunite minerals by polyphosphate injection was identified as a feasible remediation strategy for sequestering uranium in contaminated groundwater and soil in situ at the Hanford Site. Autunite stability under vadose and saturated zone environmental conditions can help to determine the long-term effectiveness of this remediation strategy. The Arthrobacter bacteria are one of the most common groups in soils and are found in large numbers in Hanford soil as well as other subsurface environments contaminated with radionuclides. Ubiquitous in subsurface microbial communities, these bacteria can play a significant role in the dissolution of minerals and the formation of secondary minerals. The main objective of this investigation was to study the bacterial interactions under oxidizing conditions with uranium (VI); study the potential role of bicarbonate, which is an integral complexing ligand for U(VI) and a major ion in groundwater compositions; and present data from autunite dissolution experiments using Arthrobacter strain G968, a less U(VI)-tolerant strain. Sterile 100 mL glass mixed reactors served as the major bioreactor for initial experimentation. These autunite-containing bioreactors were injected with bacterial cells after the autunite equilibrated with the media solution amended with 0 mM, 3 mM 5 mM and 10 mM concentrations of bicarbonate. G968 Arthrobacter cells in the amount of 10{sup 6} cells/mL were injected into the reactors after 27 days, giving time for the autunite to reach steady state. Abiotic non-carbonate controls were kept without bacterial inoculation to provide a control for the biotic samples. Samples of the solution were analyzed for dissolved U(VI) by means of kinetic phosphorescence analyzer KPA-11 (Chemcheck Instruments, Richland, WA). Analysis showed that as [HCO{sub 3}{sup -}] increases, a diminishing trend on the effect of bacteria on autunite leaching is observed. Viability of cells was conducted after 24 hours of cell

  14. Lignite microorganisms

    Energy Technology Data Exchange (ETDEWEB)

    Bulankina, M.A.; Lysak, L.V.; Zvyagintsev, D.G. [Moscow MV Lomonosov State University, Moscow (Russian Federation). Faculty of Soil Science

    2007-03-15

    The first demonstration that samples of lignite at a depth of 10 m are considerably enriched in bacteria is reported. According to direct microscopy, the abundance of bacteria was about 10{sup 7} cells/g. About 70% of cells had intact cell membranes and small size, which points to their anabiotic state. The fungal mycelium length was no more than 1 m. Lignite inoculation onto solid glucose-yeast-peptone medium allowed us to isolate bacteria of the genera Bacillus, Rhodococcus, Arthrobacter, Micrococcus, Spirillum, and Cytophaga. Representatives of the genera Penicillium and Trichoderma were identified on Czapek medium. Moistening of lignite powder increased the microbial respiration rate and microbial and fungal abundance but did not increase their generic diversity. This finding suggests that the studied microorganisms are autochthonous to lignite.

  15. Dicty_cDB: Contig-U13298-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available ... 49 6e-04 CP000614_1847( CP000614 |pid:none) Burkholderia vietnamiensis G4 c... 4...aminopimelate desuccinylase; ... 49 6e-04 AL939122_251( AL939122 |pid:none) Streptomyces coelicolor A3(2) co...3Z ,974,1456 est44= SHK693F ,1019,1487 Translated Amino Acid sequence l*a*tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*ewskliin...:none) Streptomyces coelicolor A3(2) co... 109 3e-22 CP000454_2141( CP000454 |pid:none) Arthrobacter sp. FB24, co...:none) Streptomyces griseus subsp. gri... 94 1e-17 AL939106_22( AL939106 |pid:none) Streptomyces coelicolor A3(2) co

  16. Biosurfactants, bioemulsifiers and exopolysaccharides from marine microorganisms.

    Science.gov (United States)

    Satpute, Surekha K; Banat, Ibrahim M; Dhakephalkar, Prashant K; Banpurkar, Arun G; Chopade, Balu A

    2010-01-01

    Marine biosphere offers wealthy flora and fauna, which represents a vast natural resource of imperative functional commercial grade products. Among the various bioactive compounds, biosurfactant (BS)/bioemulsifiers (BE) are attracting major interest and attention due to their structural and functional diversity. The versatile properties of surface active molecules find numerous applications in various industries. Marine microorganisms such as Acinetobacter, Arthrobacter, Pseudomonas, Halomonas, Myroides, Corynebacteria, Bacillus, Alteromonas sp. have been studied for production of BS/BE and exopolysaccharides (EPS). Due to the enormity of marine biosphere, most of the marine microbial world remains unexplored. The discovery of potent BS/BE producing marine microorganism would enhance the use of environmental biodegradable surface active molecule and hopefully reduce total dependence or number of new application oriented towards the chemical synthetic surfactant industry. Our present review gives comprehensive information on BS/BE which has been reported to be produced by marine microorganisms and their possible potential future applications.

  17. Changes in Bacterial Composition of Zucchini Flowers Exposed to Refrigeration Temperatures

    Directory of Open Access Journals (Sweden)

    F. Baruzzi

    2012-01-01

    Full Text Available Microbial spoilage is one of the main factors affecting the quality of fresh fruits and vegetables, leading to off-flavor, fermented aroma, and tissue decay. The knowledge of microbial growth kinetics is essential for estimating a correct risk assessment associated with consuming raw vegetables and better managing the development of spoilage microorganisms. This study shows, for the first time, that only a part of total microbial community, originally present on fresh harvested female zucchini flowers, was able to adapt itself to refrigerated conditions. Through the study of microbial growth kinetics it was possible to isolate forty-four strains belonging to twenty-two species of the genera Acinetobacter, Arthrobacter, Bacillus, Enterobacter, Erwinia, Klebsiella, Pantoea, Pseudoclavibacter, Pseudomonas, Serratia, Staphylococcus, and Weissella, suggesting Enterobacteriaceae as potentially responsible for pistil spoilage.

  18. Ecological aspects of microorganisms inhabiting uranium mill tailings.

    Science.gov (United States)

    Miller, C L; Landa, E R; Updegraff, D M

    1987-09-01

    Numbers and types of microorganisms in uranium mill tailings were determined using culturing techniques.Arthrobacter were found to be the predominant microorganism inhabiting the sandy tailings, whereasBacillus and fungi predominated in the slime tailings. Sulfate-reducing bacteria, capable of leaching radium, were isolated in low numbers from tailings samples but were isolated in significantly high numbers from topsoil in contact with the tailings. The results are placed in the context of the magnitude of uranium mill tailings in the United States, the hazards posed by the tailings, and how such hazards could be enhanced or diminished by microbial activities. Patterns in the composition of the microbial population are evaluated with respect to the ecological variables that influence microbial growth.

  19. Ultrastructure of Nocardia cell growth and development on defined and complex agar media.

    Science.gov (United States)

    Beaman, B L; Shankel, D M

    1969-09-01

    The cell growth of Nocardia strain 721-A on Brain Heart Infusion Agar (BHIA), nutrient agar, and chemically defined agar media was studied by light and electron microscopy. Light microscopy revealed a change in cell morphology induced by growth on BHIA. Electron microscopy demonstrated a concurrent change in intracellular complexity. On BHIA, the cells became bulbous and developed irregularly branched filaments which fragmented by multiple and random septation. These fragments appeared to undergo a secondary stage of development similar to that described for Arthrobacter. Cells grown on defined or nutrient agar did not become bulbous and lacked the unusual complexity found in cells grown on BHIA. Intracytoplasmic membranes were altered by the nutritional state of the cell and changed during cell development.

  20. Biodestructive processes occurring in the organic matter of lowland peat in the arctic zone

    Science.gov (United States)

    Svarovskaya, L. I.; Altunina, L. K.; Serebrennikova, O. V.

    2016-11-01

    A model experiment was carried on in laboratory conditions. The biodestruction of organic matter was studied using lowland peat samples collected in Kolguev Island in Barents Sea. Here the purpose was to obtain information about the species range and the activity of bacterial complex involved in the destruction processes of lowland peat organic matter from the natural environment by simulating the Arctic zone climate. The species range is found to include bacteria dominant species, i.e. Rhodococcus, Arthrobacter, Bacillus and Pseudomonas. In order to stimulate the biodestruction of organic matter, inoculate was added to the culture medium containing peat; its composition and dose were determined by the trial-and-error method. The catalytic activity of bacterial ferments was initiated in the presence of inoculate; hence, the desired effect was achieved. The composition of the organic matter of bacterial biomass and peat was analyzed by the method of gas chromatography-mass spectrometry.

  1. Earthworms modify microbial community structure and accelerate maize stover decomposition during vermicomposting.

    Science.gov (United States)

    Chen, Yuxiang; Zhang, Yufen; Zhang, Quanguo; Xu, Lixin; Li, Ran; Luo, Xiaopei; Zhang, Xin; Tong, Jin

    2015-11-01

    In the present study, maize stover was vermicomposted with the epigeic earthworm Eisenia fetida. The results showed that, during vermicomposting process, the earthworms promoted decomposition of maize stover. Analysis of microbial communities of the vermicompost by high-throughput pyrosequencing showed more complex bacterial community structure in the substrate treated by the earthworms than that in the control group. The dominant microbial genera in the treatment with the earthworms were Pseudoxanthomonas, Pseudomonas, Arthrobacter, Streptomyces, Cryptococcus, Guehomyces, and Mucor. Compared to the control group, the relative abundance of lignocellulose degradation microorganisms increased. The results indicated that the earthworms modified the structure of microbial communities during vermicomposting process, activated the growth of lignocellulose degradation microorganisms, and triggered the lignocellulose decomposition.

  2. Arsenic interception by cell wall of bacteria observed with surface-enhanced Raman scattering.

    Science.gov (United States)

    Tian, Haixia; Zhuang, Guoqiang; Ma, Anzhou; Jing, Chuanyong

    2012-06-01

    The purpose of this study was to determine the interactions between arsenic (As) resistant bacteria and As, using surface-enhanced Raman scattering (SERS) and Fourier transform infrared (FTIR) spectroscopy. According to our 16S rDNA results, eight bacteria isolated from the environment can be identified to four genera (Arthrobacter, Pseudomonas, Sphingomonas, and Acinetobacter). The bacteria were separated into cell wall and protoplast in the study to assess the As(V) attack. The As(V) stress on bacteria could be identified with SERS, but not with FTIR. The bacteria in our study primarily resist As(V) through sequestration of As(V) by the cell wall. The change in SERS peaks and their relationships with cell wall suggested that As(V) mainly interacts with functional groups on the cell wall including polysaccharides and flavin derivates.

  3. Isolation and characterization of influenza C virus inhibitors in rat serum.

    Science.gov (United States)

    Kitame, F; Nakamura, K; Saito, A; Sinohara, H; Homma, M

    1985-09-01

    Two inhibitors against haemagglutination by influenza C virus were isolated from pooled sera of normal rats by sequential chromatography on Blue Sepharose CL 6B, Ultrogel AcA 2, and DEAE-cellulose. The two inhibitors were identified as alpha 1-macroglobulin and murinoglobulin by comparison with the authentic samples. These inhibitors abolished the haemagglutination by influenza C virus strains but did not affect the haemagglutination by influenza A and B virus strains. Haemagglutination inhibition activity of both inhibitors was completely destroyed by incubation with neuraminidase from Arthrobacter ureafaciens. By contrast, no activity was lost after treatment with neuraminidase from Vibrio cholerae. These results suggest that the sialic acid residue(s) which is excised by the former neuraminidase but not by the latter is essential for the haemagglutination inhibition. The two inhibitors were inactivated by treating with sodium hydroxide and methylamine but not with sodium metaperiodate.

  4. Current studies on physiological functions and biological production of lactosucrose.

    Science.gov (United States)

    Mu, Wanmeng; Chen, Qiuming; Wang, Xiao; Zhang, Tao; Jiang, Bo

    2013-08-01

    Lactosucrose (O-β-D-galactopyranosyl-(1,4)-O-α-D-glucopyranosyl-(1,2)-β-D-fructofuranoside) is a trisaccharide formed from lactose and sucrose by enzymatic transglycosylation. This rare trisaccharide is a kind of indigestible carbohydrate, has good prebiotic effect, and promotes intestinal mineral absorption. It has been used as a functional ingredient in a range of food products which are approved as foods for specified health uses in Japan. Using lactose and sucrose as substrates, lactosucrose can be produced through transfructosylation by β-fructofuranosidase from Arthrobacter sp. K-1 or a range of levansucrases, or through transgalactosylation by β-galactosidase from Bacillus circulans. This article presented a review of recent studies on the physiological functions of lactosucrose and the biological production from lactose and sucrose by different enzymes.

  5. Homologous gene clusters of nicotine catabolism, including a new ω-amidase for α-ketoglutaramate, in species of three genera of Gram-positive bacteria.

    Science.gov (United States)

    Cobzaru, Cristina; Ganas, Petra; Mihasan, Marius; Schleberger, Paula; Brandsch, Roderich

    2011-04-01

    Gram-positive soil bacteria Arthrobacter nicotinovorans, Nocardioides sp. JS614 and Rhodococcus opacus were shown to contain similarly organized clusters of homologous genes for nicotine catabolism. An uncharacterized gene of a predicted nitrilase within these gene clusters was cloned from A. nicotinovorans and biochemical data unexpectedly showed that the protein exhibited ω-amidase activity toward α-ketoglutaramate. Structural modelling of the protein suggested the presence of the catalytic triad Cys-Glu-Lys, characteristic of this class of enzymes, and supported α-ketoglutaramate as substrate. A-ketoglutaramate could be generated by hydrolytic cleavage of the C-N bond of the trihydroxypyridine ring produced by nicotine catabolism in these bacteria. This ω-amidase, together with glutamate dehydrogenase, may form a physiologically relevant enzyme couple, leading to transformation of metabolically inert α-ketoglutaramate derived from trihydroxypyridine into glutamate, a central compound of nitrogen metabolism.

  6. Rock Phosphate Solubilization Mechanisms of One Fungus and One Bacterium

    Institute of Scientific and Technical Information of China (English)

    LIN Qi-mei; ZHAO Xiao-rong; ZHAO Zi-juan; LI Bao-guo

    2002-01-01

    Many microorganisms can dissolve the insoluble phosphates like apatite. However, the mechanisms are still not clear. This study was an attempt to investigate the mechanisms of rock phosphate solubilization by an Aspergillus 2TCiF2 and an Arthrobacter1TCRi7. The results indicated that the fungus produced a large amount of organic acids, mainly oxalic acid. The total quantity of the organic acids produced by the fungus was 550 times higher than that by the bacterium. Different organic acids had completely different capacities to solubilize the rock. Oxalic acid and citric acid had stronger capacity to dissolve the rock than malic acid, tartaric acid, lactic acid, acetic acid, malonic acid and succinic acid. The fungus solubilized the rock through excreting both proton and organic acids. The rock solubilization of the bacterium depended on only proton.

  7. Actinobacterial Flora in Feces of Healthy Cottontail Rabbits (Sylvilagus auduboni).

    Science.gov (United States)

    Zhang, Yu; Tan, Hongming; Deng, Qingli; Cao, Lixiang

    2015-03-01

    Most known antibiotics from bacteria are produced by Actinobacteria. However, little is known about the community structure and diversity of fecal actinobacteria from rabbit feces. To investigate the actinobacterial community structure in rabbit feces, different actinobacterial-specific primer sets were used to amplify the overlap regions of 16S rRNA genes from the same DNA. At the genus level, 12 actinobacterial genera were detected by the L and S libraries. Arthrobacter, Brachybacterium, Dietzia, Leucobacter, Microbacterium, Promicromonospora and Rhodococcus were detected by L and S libraries. The Nocardioides, Streptomyces and Williamsia were only detected by L library; the Oerskovia and Brevibacterium were only detected by S library. The results indicated that rabbit feces contain diverse nonpathogenic actinobacterial taxa and PCR primer sets could underestimate the actinobacterial diversity besides the DNA extract efficiency.

  8. Secondary metabolites: applications on cultural heritage.

    Science.gov (United States)

    Sasso, S; Scrano, L; Bonomo, M G; Salzano, G; Bufo, S A

    2013-01-01

    Biological sciences and related bio-technology play a very important role in research projects concerning protection and preservation of cultural heritage for future generations. In this work secondary metabolites of Burkholderia gladioli pv. agaricicola (Bga) ICMP 11096 strain and crude extract of glycoalkaloids from Solanaceae plants, were tested against a panel of microorganisms isolated from calcarenite stones of two historical bridges located in Potenza and in Campomaggiore (Southern Italy). The isolated bacteria belong to Bacillus cereus and Arthrobacter agilis species, while fungi belong to Aspergillus, Penicillium, Coprinellus, Fusarium, Rhizoctonio and Stemphylium genera. Bga broth (unfiltered) and glycoalkaloids extracts were able to inhibit the growth of all bacterial isolates. Bga culture was active against fungal colonies, while Solanaceae extract exerted bio-activity against Fusarium and Rhizoctonia genera.

  9. Applications of synchrotron infrared microspectroscopy to the study of inorganic-organic interactions at the bacterial-mineral interface

    Energy Technology Data Exchange (ETDEWEB)

    Holman, H.Y.N.; Perry, D.L.; Martin, M.C.; McKinney, W.R. [Lawrence Berkeley National Lab., CA (United States)

    1998-12-31

    Synchrotron microspectroscopy has been used to study the inorganic-organic interactions in the mid-infrared region (4,000-400 cm{sup {minus}1}) as Arthrobacter oxydans attach themselves to magnetite surfaces. Relative band intensities and band intensity ratios for functional groups of organically-derived biological molecules that are inherent to the experimental system are discussed. The molecular components as they are perturbed by interactions with water, dichromate and chromate metal ions on the mineral surfaces are investigated. Mapping of the spectral markers for the inorganic-organic interactions at the biological-mineral interfaces is presented and discussed. Comparative analyses of the synchrotron infrared microspectra suggest that the bacterial-chromium interactions depend on the solubility and toxicity of the chromium compounds.

  10. Salimyxins and enhygrolides: antibiotic, sponge-related metabolites from the obligate marine myxobacterium Enhygromyxa salina.

    Science.gov (United States)

    Felder, Stephan; Kehraus, Stefan; Neu, Edith; Bierbaum, Gabriele; Schäberle, Till F; König, Gabriele M

    2013-07-22

    Unlike their terrestrial counterparts, marine myxobacteria are hardly investigated for their secondary metabolites. This study describes three new compounds (1-3), named salimyxins and enhygrolides, obtained from the obligate marine myxobacterium Enhygromyxa salina. These are the first natural products obtained from Enhygromyxa species. Their structures were elucidated by spectroscopic analysis, including NMR and CD spectroscopy. Enhygrolides are closely related to the nostoclides, which were initially isolated from a cyanobacterium of the genus Nostoc. The salimyxins, representing structurally most unusual degraded sterols, are close to identical to demethylincisterol from the sponge Homaxinella sp. Salimyxin B and enhygrolide A inhibit the growth of the Gram-positive bacterium Arthrobacter cristallopoietes (MIC salimyxin B, 8 μg mL⁻¹; enhygrolide A, 4 μg mL⁻¹).

  11. Fungal degradation of pesticides - construction of microbial consortia for bioremediation

    DEFF Research Database (Denmark)

    Ellegaard-Jensen, Lea

    in groundwater contamination. New technologies are therefore needed for cleaning up contaminated soil and water resources. This PhD was part of the project entitled Microbial Remediation of Contaminated Soil and Water Resources (MIRESOWA) where the overall aim is to develop new technologies for bioremediation...... of pesticide contaminated soil and water. The objectives of this PhD were to investigate fungal degradation of pesticides and following to construct microbial consortia for bioremediation. In Manuscript I the fungal degradation of the phenylurea herbicide diuron was studied. Isolates of soil fungi of the genus...... be a result of co-operative catabolism or physical interactions between the organisms improving growth and/or distribution of fungi and bacteria. The bacterial strains applied were Sphingomonas sp. SRS2, Variovorax sp. SRS16 and Arthrobacter globiformis D47 and the fungal strains were Mortierella sp. LEJ702...

  12. New microbial growth factor

    Science.gov (United States)

    Bok, S. H.; Casida, L. E., Jr.

    1977-01-01

    A screening procedure was used to isolate from soil a Penicillium sp., two bacterial isolates, and a Streptomyces sp. that produced a previously unknown microbial growth factor. This factor was an absolute growth requirement for three soil bacteria. The Penicillium sp. and one of the bacteria requiring the factor, an Arthrobacter sp., were selected for more extensive study concerning the production and characteristics of the growth factor. It did not seem to be related to the siderochromes. It was not present in soil extract, rumen fluid, or any other medium component tested. It appears to be a glycoprotein of high molecular weight and has high specific activity. When added to the diets for a meadow-vole mammalian test system, it caused an increased consumption of diet without a concurrent increase in rate of weight gain.

  13. Microbial Efficacy of Phosphate Solubilization in Agro-Saline Soils of Various Areas of Sindh Region

    Directory of Open Access Journals (Sweden)

    Agha Asad Noor

    2013-04-01

    Full Text Available Microorganisms are the most prominent entities for solubilization of phosphate in various soils of different areas of Sindh Province including Tando Muhammad Khan, Tando Allah Yar, Nawabshah, Rato Dero-Larkana, Shikarpur and Umer Kot. These soils, having varying concentrations of chemicals, different climatic conditions, pH and varying numbers of microorganisms for PSA (Phosphate Solubilization Activity. This presentation shows the isolation of different fungi and bacteria capable Psa including fungi (Fusarium sp. Aspergillus sp. Penicillium sp. and Rhizopus sp. and bacteria (Bacillus sp. Pseudomonas sp. and Arthrobacter sp.. From the observations, it was revealed that fungi Aspergillus sp. and Bacillus sp. showed greater phosphate solubilization activity as compared to other fungi and bacteria showing 60 and 53.33% Psa (Phosphate Solubilizing Activity respectively

  14. Isolation of culturable endophytic bacteria from Moso bamboo (Phyllostachys edulis and 16S rDNA diversity analysis

    Directory of Open Access Journals (Sweden)

    Yuan Zong-Sheng

    2015-01-01

    Full Text Available We analyzed culturable endophytic bacteria from Moso bamboo (Phyllostachys edulis using traditional bacterial isolation and culture methods and then studied the colony characteristics and diversity with a 16S rDNA sequence analysis. We isolated 82 endophytic bacteria strains belonging to 47 species in 26 genera from the root, rhizome, stem and leaves of Moso bamboo species from populations on Wuyi Mountain, and in the Jiangle and Changting regions. There were significant differences in the composition of the culturable endophytic bacteria isolated from the different areas and from different tissues. The dominant bacteria strains from the Wuyi Mountain samples were Arthrobacter, Staphylococcus, Bacillus and Enterobacter, while the dominant bacteria from the Jiangle samples were Bacillus, Staphylococcus and Curtobacterium, and the dominant bacteria in the Changting samples were Alcaligenes, Pseudomonas, Staphylococcus and Bacillus. Our results demonstrate the abundant diversity of endophytic bacteria in Moso bamboo.

  15. Agrobacterium-mediated Transformation of Rice (Oryza sativa L.) with Atrazine Chlorohydrolase Gene (atzA)

    Institute of Scientific and Technical Information of China (English)

    WANG Song-wen; SHI Li-li; SUN Zong-xiu; CAI Bao-li; FU Ya-ping; WANG Yang; SI Hua-min; LIU Xia; ZHANG Xin

    2005-01-01

    Atrazine chlorohydrolase gene (atzA) was cloned from Arthrobacter sp. AD1. A plant expression plasmid was constructed under the control of CaMV35s promoter and was used in rice transformation. The target gene was successfully introduced into mature embryos of a japonica rice cultivar Jindao 107 by Agrobacterium- mediated transformation and hundreds of transgenic plants were obtained. The exogenous atzA gene in the transgenic plants that expressed atrazine resistance was confirmed by Southern blot hybridization. The resistance experiments by spraying transgenic rice plants with 0.133% atrazine shown that most of the transgenic rice plants exhibited the resistance to herbicide atrazine. The segregation of exogenous atzA gene in T1 progeny corresponded to the Mendelian ratio.

  16. Isolation and identification of atrazine-degrading bacteria and its degradation characteristics%阿特拉津高效降解菌株的筛选和降解特性研究

    Institute of Scientific and Technical Information of China (English)

    朱静; 李铁晶

    2012-01-01

    用富集培养法从城市污水处理厂的污泥中分离得到一株能够降解除草剂阿特拉津的降解菌株,命名为L-1.接种于500mg·L-1的阿特拉津无机盐培养基,96h对阿特拉津的降解率达到94.8%,降解效果理想,对其进行菌种的初步鉴定并对其降解特性进行研究.结果表明,该菌株被鉴定为节杆菌( Arthrobacter sp.).通过室内降解效果优化试验,确定菌株L-1对阿特拉津最佳降解条件:温度为30℃,初始pH值范围为7~8.%One atrazine-degrading bacteria named L-l was isolated from sludge of municipal sewage treatment plant by enrichment culture.After 96 hours, L-l could degrade atrazine of 500rag-L"' up to 94.8%.Based on physiological and biochemical testing and 16S rRNA gene sequence analysis, L-lwas identified as Arthrobacter sp.. The optimum degradation conditions were optimized as followinguhe temperature was 301C and the initial pH was 7-8.

  17. 海洋贝类附生细菌区系分析及弧菌拮抗菌的筛选%Isolation and biodiversity analysis of bacteria attached on the marine shellfish and selection of vibrios-antagnism bacteria

    Institute of Scientific and Technical Information of China (English)

    张柯; 丁翠玲; 张栋

    2011-01-01

    对中国威海近海海域的紫贻贝、牡蛎、花蛤、毛蛤、扇贝、海兔等6种海洋贝类的附生细菌进行了分离培养,筛选得到100株细菌。从中选出45株有代表性的菌株,克隆其16SrDNA序列,进行分子鉴定。结果表明,这些细菌分布在 Arthrobacter, Bacillus, Bizionia, Brevundimonas, Cellulophaga, Cobetia, Gelidibacter, Kocuria, Krokinobacter, Lacinutrix, Marinobacter, Mierobacteri%A preliminary screening of bacteria attached on the marine shellfish from six marine shellfishes(Mytilus edulis, Concha ostreae, Ruditapes variegate, Anadara uropygimelana, Placopecta magellanicus, and Ovula ovum) in the coastal waters of Weihai yielded 100 isolates, among which 45 strains were selected for further analysis. To investigate the phylogenetic position of these strains, the 16S rDNA sequences were cloned, sequenced, and com- pared with those of related strains and a molecular phylogenetic dendrogram was constructed based on genetic dis- tance analysis. The strains were classified as members of genera Arthrobacter, Bacillus, Bizionia, Brevundimonas, Cellulophaga, Cobetia, Gelidibacter, Kocuria Krokinobacter, Lacinutrix, Marinobacter, Microbacterium, Micrococcus, Paracoccus, Planomicrobium, Pseudoalteromonas ,Psychrobacter, Salinibacterium, Shewanella, Tenaci- baculum, and Vibrio. The antimicrobial activity of the 100 strains were screened by the agar flat seeding method. The experiment results showed that 2 strains had obvious antimicrobial activity.

  18. Thermal Analysis of Whole Bacterial Cells Exposed to Potassium Permanganate Using Differential Scanning Calorimetry: a Biphasic Dose-Dependent Response to Stress

    Directory of Open Access Journals (Sweden)

    Marina K. Abuladze

    2009-01-01

    Full Text Available Differential scanning calorimetry (DSC was applied to estimate the impact of the toxic oxidant potassium permanganate (PM on the intracellular structural and functional alterations at whole cell level using soil bacteria Arthrobacter oxydans as a model culture. Differential scanning calorimetry (DSC was applied in order to estimate the impact of the toxic oxidant potassium permanganate (PM on the intracellular structural and functional alterations at the whole cell level using the soil bacteria Arthrobacter oxydans as a model culture. We compared the total melting heat and the temperature of DNA-protein complex (DNP melting at the PM application prior to the calorimetry measurement and after 24-h exposure at the concentration range 0.02–1.4 mM. The initial oxidative effect caused changes in the pattern of the whole cell melting spectra (mainly at the temperature range 56–78°C, the decrease of Tmax °C DNP melting, and did not influence significantly the total heat of bacterial melting at different concentrations of PM. The prolonged effect of permanganate up to 24 h was characterized by a biphasic dose-dependent response to stress estimated by the DSC technique and the colony-forming assay. The low doses of PM (0.02 and 0.2 mM stimulated cell proliferation, and increased the total whole cell melting heat and the temperature of DNP melting. The toxic effect of PM up to 0.04 mM reduced cell viability, changed the character of multipeaked thermograms, and lowered the total melting heat and the temperature of DNP melting in a concentration-dependent manner. This study presents the DSC method for evaluating and monitoring the effects of exposure to potential human and environmental toxicants.

  19. Exploring the diversity and antimicrobial potential of marine Actinobacteria from the Comau Fjord in Northern Patagonia, Chile

    Directory of Open Access Journals (Sweden)

    Agustina Undabarrena

    2016-07-01

    Full Text Available Bioprospecting natural products in marine bacteria from fjord environments are attractive due to their unique geographical features. Although Actinobacteria are well known for producing a myriad of bioactive compounds, investigations regarding fjord-derived marine Actinobacteria are scarce. In this study, the diversity and biotechnological potential of Actinobacteria isolated from marine sediments within the Comau fjord, in Northern Chilean Patagonia, were assessed by culture-based approaches. The 16S rRNA gene sequences revealed that members phylogenetically related to the Micrococcaceae, Dermabacteraceae, Brevibacteriaceae, Corynebacteriaceae, Microbacteriaceae, Dietziaceae, Nocardiaceae and Streptomycetaceae families were present at the Comau fjord. A high diversity of cultivable Actinobacteria (10 genera was retrieved by using only five different isolation media. Four isolates belonging to Arthrobacter, Brevibacterium, Corynebacterium and Kocuria genera showed 16S rRNA gene identity <98.7% suggesting that they are novel species. Physiological features such as salt tolerance, artificial sea water requirement, growth temperature, pigmentation and antimicrobial activity were evaluated. Arthrobacter, Brachybacterium, Curtobacterium, Rhodococcus and Streptomyces isolates showed strong inhibition against both Gram-negative Pseudomonas aeruginosa, Escherichia coli and Salmonella enterica and Gram-positive Staphylococcus aureus, Listeria monocytogenes. Antimicrobial activities in Brachybacterium, Curtobacterium and Rhodococcus have been scarcely reported, suggesting that non-mycelial strains are a suitable source of bioactive compounds. In addition, all strains bear at least one of the biosynthetic genes coding for NRPS (91%, PKS I (18% and PKS II (73%.Our results indicate that the Comau fjord is a promising source of novel Actinobacteria with biotechnological potential for producing biologically active compounds.

  20. Biodiversity of Dominant Cultivable Endophytic Bacteria Inhabiting Tissues of Six Different Cultivars of Maize (Zea mays L. ssp. mays) Cropped under Field Conditions.

    Science.gov (United States)

    Pisarska, Katarzyna; Pietr, Stanisław Jerzy

    2015-01-01

    Endophytic bacteria (EnB) play a crucial role in plant development. This study was an attempt to isolate and identify dominant cultivable EnB inhabiting young seedlings germinated in vitro and leaves of six maize cultivars grown under field conditions at temperate climate zone with culture-dependent approach. We isolated bacteria from field cropped maize only. Strains were identified based on 16S rRNA gene sequencing. In particular, members of Actinobacteria, Bacteroidetes, Firmicutes and α- and γ-Proteobacteria were found. Species of two genus Pseudomonas and Bacillus were dominant among them. Higher diversity of EnB was found in plants collected from Kobierzyce, where we identified 35 species from 16 genera with 22 species uniquely found at this field. On the contrary, from maize leaves collected at Smolice we identified 24 species representing 10 genera with 10 species uniquely isolated from this field. However, none of species was common for all cultivars at both locations. Among isolated EnB six species only, Pseudomonas clemancea, Pseudomonasfluorescens, Bacillus megaterium, Bacillus simplex, Arthrobacter nicotinovorans and Arthrobacter nitroguajacolicus, were found in aboveground parts of the same cultivar grown on both tested fields. The fact that the same cultivars, sown from the same lots of seeds, under field conditions on two different locations were colonized with noticeably different associations of cultivable EnB suggest that cultivar genotype is an important factor selecting endophytic bacteria from local agro-environment. To our knowledge this is first report about the significant variation of diversity of cultivable endophytic bacteria inhabiting aboveground parts of the same maize cultivars grown at different locations.

  1. Identification of bacteria from clinical samples using Bartonella alpha-Proteobacteria growth medium.

    Science.gov (United States)

    Cadenas, Maria B; Maggi, Ricardo G; Diniz, Pedro P V P; Breitschwerdt, Kyle T; Sontakke, Sushama; Breithschwerdt, Edward B

    2007-11-01

    In an effort to overcome historical problems associated with the isolation of Bartonella species from animal and human blood samples, our laboratory developed a novel, chemically modified, insect-based, liquid culture medium (Bartonella alpha-Proteobacteria growth medium, BAPGM). In this study, we describe the isolation of non-Bartonella bacteria from aseptically obtained human blood and tissue samples that were inoculated into BAPGM pre-enrichment culture medium, and were obtained during attempts to define each individuals Bartonella infection status. After incubation for at least 7 days in liquid BAPGM, pre-enriched inoculums were sub-cultured onto a BAPGM/blood agar plate. Bacterial DNA was extracted from pooled plated colonies and amplified using conventional PCR targeting the 16S rRNA gene. Subsequently, amplicons were cloned, sequenced and compared to GenBank database sequences using the BLAST program. Regardless of the patient's Bartonella status, seventeen samples generated only one 16S rDNA sequence, representing the following genera: Arthrobacter, Bacillus, Bartonella, Dermabacter, Methylobacterium, Propionibacterium, Pseudomonas, Staphylococcus and bacteria listed as "non-cultured" in the GenBank database. Alkalibacterium, Arthrobacter, Erwinia, Kineococcus, Methylobacterium, Propionibacterium, Sphingomonas, and Staphylococcus were isolated from nine Bartonella-infected individuals. Co-isolation of Acinetobacter, Sphingomonas, Staphylococcus spp. and bacteria listed as "non-cultured" in the GenBank database was achieved for four samples in which Bartonella spp. were not detected. Despite the phylogenetic limitations of using partial 16S rRNA gene sequencing for species and strain identification, the investigational methodology described in this study may provide a complementary approach for the isolation and identification of bacteria from patient samples.

  2. Cultured Microbiological Content of the Intestinal Tract and Stored Pollen of Apis mellifera (Hymenoptera: Apidae Contenido microbiológico cultivable del tracto intestinal y polen almacenado de Apis mellifera (Hymenoptera: Apidae

    Directory of Open Access Journals (Sweden)

    García García Duberney

    2006-06-01

    Full Text Available Microorganisms associated with Apis mellifera were characterized. Samples were collected from storage pollen (young pollen and ripe pollen and carried in corbiculas, and bee's gut of newly born and adult workers. Bacteria belonging to Pseudomonas, Streptococcus, Micrococcus, Lactobacillus, Klebsiella, Proteus, Yersinia and Arthrobacter genus and molds of Rhizopus, Alternaria and Epicoccum genus were isolated. According to their biochemical properties some of these microbes may be involved in the outer pollen walls degradation and could have been acquired by the bees through food ingestion or contact with other bees. The molds presence is explicated by their wide environmental distribution; they are typically found in soil and plants chosen as food source by bees.Se caracterizaron los microorganismos cultivables asociados con Apis mellifera. Las muestras fueron tomadas a partir de polen almacenado (joven y maduro y transportado en corbículas y tracto digestivo de las abejas (forrajeras y recién nacidas. Se aislaron bacterias pertenecientes a los géneros Pseudomonas, Streptococcus, Micrococcus, Lactobacillus, Klebsiella, Proteus, y Arthrobacter y hongos de los géneros Rhizopus, Alternaria y Epicoccum. De acuerdo a sus propiedades bioquímicas, algunas de estas bacteriaspueden estar involucradas en la degradación de los compuestos de la capa externa del polen y son adquiridas por las abejas a través del alimento y contacto con otros individuos de la colmena. La presencia de los hongos se explica por su amplia distribución en el ambiente, ya que los tres géneros se encuentran comúnmente en el suelo y en las
    plantas que las abejas pueden seleccionar como fuente de alimento.

  3. Exploring the Diversity and Antimicrobial Potential of Marine Actinobacteria from the Comau Fjord in Northern Patagonia, Chile

    Science.gov (United States)

    Undabarrena, Agustina; Beltrametti, Fabrizio; Claverías, Fernanda P.; González, Myriam; Moore, Edward R. B.; Seeger, Michael; Cámara, Beatriz

    2016-01-01

    Bioprospecting natural products in marine bacteria from fjord environments are attractive due to their unique geographical features. Although, Actinobacteria are well known for producing a myriad of bioactive compounds, investigations regarding fjord-derived marine Actinobacteria are scarce. In this study, the diversity and biotechnological potential of Actinobacteria isolated from marine sediments within the Comau fjord, in Northern Chilean Patagonia, were assessed by culture-based approaches. The 16S rRNA gene sequences revealed that members phylogenetically related to the Micrococcaceae, Dermabacteraceae, Brevibacteriaceae, Corynebacteriaceae, Microbacteriaceae, Dietziaceae, Nocardiaceae, and Streptomycetaceae families were present at the Comau fjord. A high diversity of cultivable Actinobacteria (10 genera) was retrieved by using only five different isolation media. Four isolates belonging to Arthrobacter, Brevibacterium, Corynebacterium and Kocuria genera showed 16S rRNA gene identity <98.7% suggesting that they are novel species. Physiological features such as salt tolerance, artificial sea water requirement, growth temperature, pigmentation and antimicrobial activity were evaluated. Arthrobacter, Brachybacterium, Curtobacterium, Rhodococcus, and Streptomyces isolates showed strong inhibition against both Gram-negative Pseudomonas aeruginosa, Escherichia coli and Salmonella enterica and Gram-positive Staphylococcus aureus, Listeria monocytogenes. Antimicrobial activities in Brachybacterium, Curtobacterium, and Rhodococcus have been scarcely reported, suggesting that non-mycelial strains are a suitable source of bioactive compounds. In addition, all strains bear at least one of the biosynthetic genes coding for NRPS (91%), PKS I (18%), and PKS II (73%). Our results indicate that the Comau fjord is a promising source of novel Actinobacteria with biotechnological potential for producing biologically active compounds. PMID:27486455

  4. CONTENIDO MICROBIOLÓGICO CULTIVABLE DEL TRACTO INTESTINAL Y POLEN ALMACENADO DE Apis mellifera (Hymenoptera: Apidae Cultured Microbiological Content of the Intestinal Tract and Stored Pollen of Apis mellifera (Hymenoptera: Apidae

    Directory of Open Access Journals (Sweden)

    DUBERNEY GARCÍA GARCÍA

    2006-06-01

    Full Text Available Se caracterizaron los microorganismos cultivables asociados con Apis mellifera. Las muestras fueron tomadas a partir de polen almacenado (joven y maduro y transportado en corbículas y tracto digestivo de las abejas (forrajeras y recién nacidas. Se aislaron bacterias pertenecientes a los géneros Pseudomonas, Streptococcus, Micrococcus, Lactobacillus, Klebsiella, Proteus, Yersinia y Arthrobacter y hongos de los géneros Rhizopus, Alternaria y Epicoccum. De acuerdo a sus propiedades bioquímicas, algunas de estas bacterias pueden estar involucradas en la degradación de los compuestos de la capa externa del polen y son adquiridas por las abejas a través del alimento y contacto con otros individuos de la colmena. La presencia de los hongos se explica por su amplia distribución en el ambiente, ya que los tres géneros se encuentran comúnmente en el suelo y en las plantas que las abejas pueden seleccionar como fuente de alimento.Microorganisms associated with Apis mellifera were characterized. Samples were collected from storage pollen (young pollen and ripe pollen and carried in corbiculas, and bee’s gut of newly born and adult workers. Bacteria belonging to Pseudomonas, Streptococcus, Micrococcus, Lactobacillus, Klebsiella, Proteus, Yersinia and Arthrobacter genus and molds of Rhizopus, Alternaria and Epicoccum genus were isolated. According to their biochemical properties some of these microbes may be involved in the outer pollen walls degradation and could have been acquired by the bees through food ingestion or contact with other bees. The molds presence is explicated by their wide environmental distribution; they are typically found in soil and plants chosen as food source by bees.

  5. Laboratory and Field Evidence for Long-Term Starvation Survival of Microorganisms in Subsurface Terrestrial Environments

    Energy Technology Data Exchange (ETDEWEB)

    Kieft, T.L. [Biology Dept., New Mexico Inst. of Mining and Technology, Socorro, NM (United States); Murphy, E.M. [Pacific Northwest National Lab., Richland, WA (United States); Amy, P.S.; Haldeman, D.L. [Department of Biological Sciences, University of Nevada, Las Vegas, NV (United States); Ringelberg, D. B. [Center for Environmental Biotechnology, University of Tennessee, Knoxville, TN (United States)]|[Oak Ridge National Lab., TN (United States)

    1997-12-31

    BIOGEOCHEMICAL MODELING OF GROUNDWATER FLOW AND NUTRIENT FLUX IN SUBSURFACE ENVIRONMENTS INDICATES THAT INHABITANT MICROORGANISMS EXPERIENCE SEVERE NUTRIENT LIMITATION. USING LABORATORY AND FIELD METHODS, WE HAVE BEEN TESTING STARVATION SURVIVAL IN SUBSURFACE MICROORGANISMS. IN MICROCOSM EXPERIMENTS, WE HAVE SHOWN THAT STRAINS OF TWO COMMONLY ISOLATED SUBSURFACE GENERA, ARTHROBACTER AND PSEUDOMONAS, ARE ABLE TO MAINTAIN VIABILITY IN LOW-NUTRIENT, NATURAL SUBSURFACE SEDIMENTS FOR OVER ONE YEAR. THESE NON-SPORE-FORMING BACTERIA UNDERGO RAPID INITIAL MINIATURIZATION FOLLOWED BY A STABILIZATION OF CELL SIZE. MEMBRANE LIPID PHOSPHOLIPID FATTY ACID (PLFA) PROFILES OF THE PSEUDOMONAS ARE CONSISTENT WITH ADAPTATION TO NUTRIENT STRESS; ARTHROBACTER APPARENTLY RESPONDS TO NUTRIENT DEPRIVATION WITHOUT ALTERING MEMBRANE PLFA. TO TEST SURVIVABILITY OF MICROORGANISMS OVER A GEOLOGIC TIME SCALE, WE CHARACTERIZED MICROBIAL COMMUNITIES IN A SEQUENCE OF UNSATURATED SEDIMENTS RANGING IN AGE FROM MODEM TO {gt}780,000 years. Sediments were relatively uniform silts in Eastern Washington State. Porewater ages at depth (measured by the chloride mass-balance approach) were as old as 3,600 years. Microbial abundance, biomass, and activities (measured by direct counts, culture counts, total PLFAs, and radiorespirometry) declined with sediment age. The pattern is consistent with laboratory microcosm studies of Microbial survival: rapid short-term change followed by long-term survival of a proportion of cells. Even the oldest sediments evinced a small but viable Microbial community. Microbial survival appeared to be a function of sediment age. Porewater age appeared to influence the markup of surviving communities, as indicated by PLFA profiles. Sites with different Porewater recharge rates and patterns of Pleistocene flooding had different communities.

  6. Screening, Molecular Identification and Adaptability Exploration of Antarctic Microbial Flocculant-Producing Bacteria%南极微生物絮凝剂产生菌的筛选、分子鉴定及适应性研究

    Institute of Scientific and Technical Information of China (English)

    杜宁

    2012-01-01

    Seven microbial flocculant-producing bacteria were separated from antarctic seawater,sea ice and marine sediment. The molecular identification of these bacteria was by the way of 16S rRNA gene sequence amplification. Phylogenetic analysis showed that they belonged to Acinetobacter,Arthrobacter,Psychrobacter,Ser-ratia,Pseudomonas and Pseudoalteromonas, respectively. Different carbon sources and nitrogen sources were used to culture the bacteria in order to observe the change of flocculation activity. The bacteria, 1-2 and P2-13-1, were of universal adaptability to different carbon sources and nitrogen sources and had higher flocculation activity in economic culture medium.%从南极海水、海冰、底泥中分离得到7株产絮凝剂的菌株,通过16S rRNA基因序列扩增方法进行分子鉴定,分别隶属于不动杆菌属(Acinetobacter)、节杆菌属(Arthrobacter)、嗜冷杆菌属(Psychrobacter)、沙雷菌属(Serratia)、假单胞菌属(Pseudomonas)和假交替单胞菌属(Pseudoa lteromonas).改变培养基中碳源和氮源的组成并观察絮凝率的变化,筛选出在经济培养基条件下具有较高絮凝活性、同时对碳源和氮源具有普适性的菌株I-2和P2-13-1.

  7. Responses of properties in the plasma sheet and at the geosynchronous orbit to interplanetary shock

    Institute of Scientific and Technical Information of China (English)

    YAO Li; LIU ZhenXing; ZUO PingBing; ZHANG LingQian; DUAN SuPing

    2009-01-01

    On July 22,2004,the WIND spacecraft detected a typical interplanetary shock. There was sustaining weak southward magnetic field in the preshock region and the southward field was suddenly enhanced across the shock front (i.e.,southward turning). When the shock impinged on the magnetosphere,the magnetospheric plasma convection was abruptly enhanced in the central plasma sheet,which was directly observed by both the TC-1 and Cluster spacecraft located in different regions. Simultaneously,the Cluster spacecraft observed that the dawn-to-dusk electric field was abruptly enhanced. The variations of the magnetic field observed by TC-1,Cluster,GOES-10 and GOES-12 that were distributed in different regions in the plasma sheet and at the geosynchronous orbit are obviously distinct. TC-1 observations showed that the magnetic intensity kept almost unchanged and the elevation angle decreased,but the Cluster spacecraft,which was also in the plasma sheet and was further from the equator,observed that the magnetic field was obviously enhanced. Simultaneously,GOES-12 located near the midnight observed that the magnetic intensity sharply increased and the elevation angle decreased,but GOES-10 located in the dawn side observed that the magnetic field was merely compressed with its three components all sharply increasing. Furthermore,the energetic proton and electron fluxes at nearly all channels observed by five LANL satellites located at different magnetic local times (MLTs) all showed impulsive enhancements due to the compression of the shock. The responses of the energetic particles were much evident on the dayside than those on the nightside. Especially the responses near the midnight were rather weak. In this paper,the possible reasonable physical explanation to above observations is also discussed. All the shock-induced responses are the joint effects of the solar wind dynamic pressure pulse and the magnetic field southward turning.

  8. Gender differences in the T-cell profiles of the airways in COPD patients associated with clinical phenotypes

    Science.gov (United States)

    Forsslund, Helena; Yang, Mingxing; Mikko, Mikael; Karimi, Reza; Nyrén, Sven; Engvall, Benita; Grunewald, Johan; Merikallio, Heta; Kaarteenaho, Riitta; Wahlström, Jan; Wheelock, Åsa M; Sköld, C Magnus

    2017-01-01

    T lymphocytes are believed to play an important role in the pathogenesis of chronic obstructive pulmonary disease (COPD). How T cells are recruited to the lungs and contribute to the inflammatory process is largely unknown. COPD is a heterogeneous disease, and discriminating disease phenotypes based on distinct molecular and cellular pathways may provide new approaches for individualized diagnosis and therapies. Bronchoalveolar lavage (BAL) and blood samples were obtained from 40 never-smokers, 40 smokers with normal lung function, and 38 COPD patients. T-cell chemokine receptor expression was analyzed with flow cytometry, and soluble BAL cytokines and chemokines were measured using a cytokine multiplex assay. Correlations with gender and clinical characteristics including lung imaging were investigated using multivariate modeling. Th1/Tc1- and Th2/Tc2-associated soluble analytes and T-cell chemokine receptors were analyzed as cumulative Th1/Tc1 and Th2/Tc2 immune responses. A higher expression of chemokine receptor CCR5 on CD8+ T cells in BAL and higher percentage of CXCR3+CD8+ T cells in blood was found in female smokers with COPD compared to those without COPD. CCR5 expression on CD4+ and CD8+ T cells was lower in BAL from male smokers with COPD compared to those without COPD. Among female smokers with COPD, Th1/Tc1 immune response was linked to BAL macrophage numbers and goblet cell density, and Th2/Tc2 response was associated with the measures of emphysema on high-resolution computed tomography. The highly gender-dependent T-cell profile in COPD indicates different links between cellular events and clinical manifestations in females compared to males. Our findings may reveal mechanisms of importance for the difference in clinical course in female COPD patients compared to males. PMID:28053515

  9. Simvastatin requires activation in accessory cells to modulate T-cell responses in asthma and COPD.

    Science.gov (United States)

    Knobloch, Jürgen; Yakin, Yakup; Körber, Sandra; Grensemann, Barbara; Bendella, Zeynep; Boyaci, Niyazi; Gallert, Willem-Jakob; Yanik, Sarah Derya; Jungck, David; Koch, Andrea

    2016-10-05

    T-cell-dependent airway and systemic inflammation triggers the progression of chronic obstructive pulmonary disease (COPD) and asthma. Retrospective studies suggest that simvastatin has anti-inflammatory effects in both diseases but it is unclear, which cell types are targeted. We hypothesized that simvastatin modulates T-cell activity. Circulating CD4+ and CD8+ T-cells, either pure, co-cultured with monocytes or alveolar macrophages (AM) or in peripheral blood mononuclear cells (PBMCs), were ex vivo activated towards Th1/Tc1 or Th2/Tc2 and incubated with simvastatin. Markers for Th1/Tc1 (IFNγ) and Th2/Tc2 (IL-5, IL-13) were measured by ELISA; with PBMCs this was done comparative between 11 healthy never-smokers, 11 current smokers without airflow limitation, 14 smokers with COPD and 11 never-smokers with atopic asthma. T-cell activation induced IFNγ, IL-5 and IL-13 in the presence and absence of accessory cells. Simvastatin did not modulate cytokine expression in pure T-cell fractions. β-hydroxy-simvastatin acid (activated simvastatin) suppressed IL-5 and IL-13 in pure Th2- and Tc2-cells. Simvastatin suppressed IL-5 and IL-13 in Th2-cells co-cultivated with monocytes or AM, which was partially reversed by the carboxylesterase inhibitor benzil. Simvastatin suppressed IL-5 production of Th2/Tc2-cells in PBMCs without differences between cohorts and IL-13 stronger in never-smokers and asthma compared to COPD. Simvastatin induced IFNγ in Th1/Tc1-cells in PBMCs of all cohorts except asthmatics. Simvastatin requires activation in accessory cells likely by carboxylesterase to suppress IL-5 and IL-13 in Th2/Tc2-cells. The effects on Il-13 are partially reduced in COPD. Asthma pathogenesis prevents simvastatin-induced IFNγ up-regulation. Simvastatin has anti-inflammatory effects that could be of interest for asthma therapy.

  10. 以纳米SiC为填料的激光重熔等离子喷涂陶瓷涂层组织及耐腐蚀性能的研究%Research on microstructure and corrosion characteristics of plasma-sprayed Ceramic coating by laser remelting of nano-SiC stuffing

    Institute of Scientific and Technical Information of China (English)

    花国然; 罗新华; 黄因慧; 赵剑峰; 张永康

    2004-01-01

    在45#钢表面,以等离子喷涂技术制备了WC/Co-NiCrAl涂层(TC-1).采用激光直接重熔等离子喷涂陶瓷涂层技术制备了激光重熔WC/Co-NiCrAl/laser-remelting陶瓷涂层(TC-2);以纳米SiC粉末为填料,对等离子喷涂层进行了填料下的激光重熔,制备了纳米SiC改性的WC/Co-NiCrAl/nano-SiC复合陶瓷涂层(TC-3).采用X射线衍射、扫描电镜对三种涂层微观组织进行了分析,同时对陶瓷涂层的耐腐蚀性能进行了研究.结果表明,TC-1涂层由WC,W2C,W6C2.54,W,Co,CoO组成;TC-2重熔层由WC,W2C,CoO及W组成;纳米改性后的重熔层TC-3由SiC,Si2W,WC,W及CoO组成.在激光作用下,原等离子喷涂层WC/Co的片层状组织得以消除.与TC-1涂层相比,TC-2及TC-3陶瓷涂层致密化程度明显提高,涂层耐腐蚀性能也得到了明显的改善.

  11. Characterization of Heterogeneous Prostate Tumors in Targeted Pten Knockout Mice.

    Directory of Open Access Journals (Sweden)

    Hanneke Korsten

    Full Text Available Previously, we generated a preclinical mouse prostate tumor model based on PSA-Cre driven inactivation of Pten. In this model homogeneous hyperplastic prostates (4-5m developed at older age (>10m into tumors. Here, we describe the molecular and histological characterization of the tumors in order to better understand the processes that are associated with prostate tumorigenesis in this targeted mouse Pten knockout model. The morphologies of the tumors that developed were very heterogeneous. Different histopathological growth patterns could be identified, including intraductal carcinoma (IDC, adenocarcinoma and undifferentiated carcinoma, all strongly positive for the epithelial cell marker Cytokeratin (CK, and carcinosarcomas, which were negative for CK. IDC pattern was already detected in prostates of 7-8 month old mice, indicating that it could be a precursor stage. At more than 10 months IDC and carcinosarcoma were most frequently observed. Gene expression profiling discriminated essentially two molecular subtypes, denoted tumor class 1 (TC1 and tumor class 2 (TC2. TC1 tumors were characterized by high expression of epithelial markers like Cytokeratin 8 and E-Cadherin whereas TC2 tumors showed high expression of mesenchyme/stroma markers such as Snail and Fibronectin. These molecular subtypes corresponded with histological growth patterns: where TC1 tumors mainly represented adenocarcinoma/intraductal carcinoma, in TC2 tumors carcinosarcoma was the dominant growth pattern. Further molecular characterization of the prostate tumors revealed an increased expression of genes associated with the inflammatory response. Moreover, functional markers for senescence, proliferation, angiogenesis and apoptosis were higher expressed in tumors compared to hyperplasia. The highest expression of proliferation and angiogenesis markers was detected in TC2 tumors. Our data clearly showed that in the genetically well-defined PSA-Cre;Pten-loxP/loxP prostate tumor

  12. Lattice dynamics and broad-band dielectric properties of multiferroic Pb(Fe1/2Nb1/2)O3 ceramics

    Science.gov (United States)

    Mackeviciute, R.; Goian, V.; Greicius, S.; Grigalaitis, R.; Nuzhnyy, D.; Holc, J.; Banys, J.; Kamba, S.

    2015-02-01

    Complex dielectric properties of Pb(Fe1/2Nb1/2)O3 ceramics were investigated in a broad frequency range from 100 Hz up to 90 THz. A broad dielectric anomaly was observed near the temperature of the ferroelectric phase transition (TC1 = 376 K). Below 1 MHz, the anomaly is strongly influenced by conductivity of the sample, but higher frequency data taken up to 81 MHz reveal a broad and frequency independent peak at TC1 typical for a diffuse ferroelectric phase transition. Surprisingly, dielectric permittivity measured at 37 GHz exhibits a peak shifted by 25 K above TC1, which indicates polar nanoregions with dynamics in microwave frequency region. A dielectric relaxation, which appears in THz region below 700 K, slows down towards TC1 and again hardens below TC2 = 356 K. This central mode drives both phase transitions, so they belong to order-disorder type, although the polar phonons exhibit anomalies near both phase transitions. In the paraelectric phase, infrared reflectivity spectra correspond to local F m 3 ¯ m structure due to short-range chemical ordering of Fe and Nb cations on the B perovskite sites. Moreover, each polar phonon is split due to two different cations on the B sites. Recently, Manley et al. [Nat. Commun. 5, 3683 (2014)] proposed a new mechanism of creation of polar nanoregions in relaxor ferroelectrics. They argued, based on their inelastic neutron scattering studies of PMN-PT, that the TO1 phonon is split and interaction of both components gives rise to so called Anderson phonon localization, which can produce regions of trapped standing waves and these waves induce polar nanoregions in relaxors. We cannot exclude or confirm this mechanism, but we show that the splitting of polar phonons is a common feature for all complex perovskites with relaxor ferroelectric behavior and it can be also observed in canonical ferroelectric BaTiO3, where the soft mode is split in paraelectric phase due to a strong lattice anharmonicity.

  13. Optimization of large area YBa sub 2 Cu sub 3 O sub 7-x films by single target ion beam sputtering

    Energy Technology Data Exchange (ETDEWEB)

    Gauzzi, A.; Lucia, M.L.; Affronte, M.; Pavuna, D. (Inst. for Micro- and Optoelectronics, Swiss Federal Inst. of Tech. (EPFL), Lausanne (Switzerland))

    1991-12-01

    We report on the in-situ growth over large area of high-quality homogeneous YBa{sub 2}Cu{sub 3}O{sub 7-x} films by single target ion beam sputtering. The '123' stoichiometry transfer to the substrates is obtained by using sufficiently low power ion beam and a grazing angle between the ion beam and the target. The as-deposited films show consistent homogeneity and reproducible superconducting properties ({Delta}Tc<1 K, j{sub c}(77K)>10{sup 6} A cm{sup -2} at 77K) over areas larger than {approx equal}30 cm{sup 2}. (orig.).

  14. The imbalance of helper T lymphocytes and cytotoxic T lymphocytes in acute renal transplantation rejection

    Institute of Scientific and Technical Information of China (English)

    YAN JIANG; ZHI QIN TANG; LIN PENG; YU LIANG WANG; ZHI PING WANG

    2007-01-01

    To investigate the imbalance state of helper T lymphocytes (Th) and cytotoxic T lymphocytes (Tc) and the roles of Th1/Th2/Th3 and Tc1/Tc2 cells in renal transplantation rejection, the percentages of these cells in peripheral blood of 24 cases of renal transplantation recipients with acute rejection and the dynamic changes of the CD4/CD8 ratio were determined by flow cytometry analysis,while 30 cases of healthy individuals were set up as controls. In these healthy controls, the percentages of the Th1, Th2 and Th3 cells were (10.45±8.15)%, (5.05±4.15)% and (3.90±3.21)%,and those of Tc1 and Tc2 cells were (9.83±7.03)% and (4.51±2.17)%, respectively. However,the percentages of Th1 and Tc1 cells in peripheral blood of the stable recipients after transplantation were (7.29±5.62)% and (7.04±5.15)%, showing definite reduction, while those of Th2, Th3and Tc2 cells showed significant increase, (6.34±5.67)%, (4.94±4.14) % and ( 6.86 ±4.42) %, respectively. In case of recipients with acute rejection, the percentages of Th1 and Tc1 cells appeared to be (18.55±13.21)% and (15.84±11.72)%, also showing significant increase, but those of Th2,Th3 and Tc2 cells appeared to be reduced, (4.19±3.62)%, (3.02±2.83)% and (3.88±1.63) %, respectively. Significant differences could be detected among these three groups (P <0.05). The CD4/CD8 ratio in cases with acute rejection was higher than those of stable recipients (2.24±0.59 vs 1.95±0.45), but that of the stable recipients and healthy controls (1.98±0.31 )showed no any significant difference. From the above observation, it is evident that imbalance between Th1, Th2 and Th3 with Te1 and Tc2 cells may exist after renal transplantation and probably, the immune imbalance may be induced through the secretion of cytokines INF-γ by Th1 or Te1 cells , I1-4 by Th2 and Tc2 cells and TGF-β by Th3.

  15. A One-Dimensional Thermal Model of a TOPAZ-II TFE

    Science.gov (United States)

    2007-11-02

    through the Cs vapour . Since the heat transfer via electron transfer is significant under typical TFE operating conditions, this effectively couples the...VoU, (1.3) The heat flux due to conduction through the Cs vapour , Qc, is given by Hatsopoulos and Gyftopoulos (1973) as Qc,= - Xw(TmwXTE-Tc) (1.4) d...shutdown of the reactor at the end of run 7. Hence data from run 7 is only available for a few operating conditions. Air intrusions into the TFE inter

  16. Transposable elements in phytopathogenic Verticillium spp.: insights into genome evolution and inter- and intra-specific diversification

    Directory of Open Access Journals (Sweden)

    Amyotte Stefan G

    2012-07-01

    Full Text Available Abstract Background Verticillium dahliae (Vd and Verticillium albo-atrum (Va are cosmopolitan soil fungi causing very disruptive vascular diseases on a wide range of crop plants. To date, no sexual stage has been identified in either microorganism suggesting that somatic mutation is a major force in generating genetic diversity. Whole genome comparative analysis of the recently sequenced strains VdLs.17 and VaMs.102 revealed that non-random insertions of transposable elements (TEs have contributed to the generation of four lineage-specific (LS regions in VdLs.17. Results We present here a detailed analysis of Class I retrotransposons and Class II “cut-and-paste” DNA elements detected in the sequenced Verticillium genomes. We report also of their distribution in other Vd and Va isolates from various geographic origins. In VdLs.17, we identified and characterized 56 complete retrotransposons of the Gypsy-, Copia- and LINE-like types, as well as 34 full-length elements of the “cut-and-paste” superfamilies Tc1/mariner, Activator and Mutator. While Copia and Tc1/mariner were present in multiple identical copies, Activator and Mutator sequences were highly divergent. Most elements comprised complete ORFs, had matching ESTs and showed active transcription in response to stress treatment. Noticeably, we found evidences of repeat-induced point mutation (RIP only in some of the Gypsy retroelements. While Copia-, Gypsy- and Tc1/mariner-like transposons were prominent, a large variation in presence of the other types of mobile elements was detected in the other Verticillium spp. strains surveyed. In particular, neither complete nor defective “cut-and-paste” TEs were found in VaMs.102. Conclusions Copia-, Gypsy- and Tc1/mariner-like transposons are the most wide-spread TEs in the phytopathogens V. dahliae and V. albo-atrum. In VdLs.17, we identified several retroelements and “cut-and-paste” transposons still potentially active. Some of these

  17. Progress of Double Star Program

    Institute of Scientific and Technical Information of China (English)

    LIU Zhenxing; CAO Jinbin

    2006-01-01

    The Double Star Programme (DSP) is the first joint space mission between China and ESA. The mission, which is made of two spacecraft, is designed to investigate the magnetospheric global processes and their response to the interplanetary disturbances in conjunction with the Cluster mission. The first spacecraft, TC-1 (Tan Ce means "Explorer"), was launched on 30 December 2003, and the second one, TC-2, on 25 July 2004 on board two Chinese Long March 2C. Due to the importance of and success of DSP, both CNSA and ESA approved the extension of DSP. This paper presents DSP mission and some important scientific results made based on the data of DSP.

  18. Effects of low doses of hydrochloride tetracycline on bone metabolism and uterus in ovariectomized rats

    Institute of Scientific and Technical Information of China (English)

    LIQing-Nan; HUBin; HUANGLian-Fang; CHENYan; WENGLin-Ling; ZhengHu; CHENHuai-Qing

    2003-01-01

    AIM:To study the effects of low doses of hydrochloride tetracycline (Tc) on bone metabolism and uterus in the ovariectomized (Ova) rats. METHODS:Forty 3-month-old rats were randomly divided into 5 groups: sham group, Ova group, Tc1 group (1.2mg·kg-1·d-1), Tc2 group (4.8mg·kg-1·d-1), and estrone group (1.48 mg·kg-1·d-1),oral fed for 3 months. The proximal tibia metaphyses were processed undecalcified for quantitative bone histomorphometry and the soft tissues were processed in paraffin for pathological observation. RESULTS: Placebo-treated (lactose) Ova rats were characterized by trabecular area (TA) decreasing and their architecture worsening compared with sham controls, and bone resorption was over formation with high bone turnover. The uteri were atrophy. (2)In estrone-treated group, TA and trabecular numbers were significantly increased and the trabecular separation decreased vs Ova group. Estrone slowed down Ova-inducing bone high turnover. But the size, weight, and the endometrium of the uteri in this group were increased vs Ova group. (3) TA was increased in both Tc1 and Tc2 groups compared with Ova rats. Tc maintained bone formation indices almost at Ova level, and only decreased mineral apposition rate (MAR) in Tc1 group, and declined bone resorption perimeter. The uteri and the cell of liver and kidney almost maintained at Ova level; Tc2 decreased labeling perimeter and increased MAR in comparison with Tc1 group. The uteri were atrophy, whose size maintained at Ova level; yellow labeling was not found in bone with these doses of Tc, while yellow labeling could be seen with the doses of 30mg·kg-1·d-1 of Tc for bone marker. CONCLUSION:The two doses of Tc have similar effects on preventing bone loss in Ova rats while the bone formation and uterus are not affected. However, Tc2 does not have more effects on increasing bone mass, Tc2 causes less mild damages to the liver and kidneys.

  19. La formación del registro antracológico: estudio estadístico de los efectos de las técnicas arqueológicas de recuperación sobre carbón vegetal

    OpenAIRE

    2005-01-01

    Este trabajo proporciona datos experimentales acerca de la influencia de las técnicas arqueológicas de recuperación empleadas sobre restos de carbón vegetal. El testeo realizado sobre los conjuntos recuperados en el compuesto doméstico TC1 demostró que las técnicas de recuperación, ya sean éstas automatizadas o manuales, modelan en gran medida la formación del registro antracológico. Estos resultados fueron empleados como referentes para tomar decisiones en la investigación ace...

  20. Bonzo/CXCR6 expression defines type 1–polarized T-cell subsets with extralymphoid tissue homing potential

    OpenAIRE

    2001-01-01

    Chemokine receptor expression is finely controlled during T-cell development. We show that newly identified chemokine receptor Bonzo/CXCR6 is expressed by subsets of Th1 or T-cytotoxic 1 (Tc1) cells, but not by Th2 or Tc2 cells, establishing Bonzo as a differential marker of polarized type 1 T cells in vitro and in vivo. Priming of naive T cells by dendritic cells induces expression of Bonzo on T cells. IL-12 enhances this dendritic cell–dependent upregulation, while IL-4 inhibits it. In bloo...

  1. Efecto del Número de Parto sobre el Consumo de Alimento Voluntario de las Cerdas durante la Fase de Lactancia y su Repercusión en el Intervalo Destete-Estro. Nota Técnica

    OpenAIRE

    Rosa Elena Pérez Sánchez; Gerardo Ordaz Ochoa; Aureliano Juárez Caratachea; Antonio García Valladares; Ruy Ortiz Rodríguez

    2015-01-01

    El objetivo fue determinar el efecto del número de parto de la cerda sobre el consumo de alimento voluntario (CA) durante la fase de lactancia (FL) y su repercusión en el intervalo desteteestro (IDE). Para ello se utilizaron 18 cerdas mestizas (Yorkshire x Landrace x Pietrain), divididas de acuerdo al tipo de cerdas (TC): TC1 cerdas primíparas y TC2 cerdas multíparas. En ambos TC se midió CA diario (d), pérdida de peso corporal (PPC), peso de la camada al nacimiento y al destete; así como el ...

  2. Accurate Critical Parameters for the Modified Lennard-Jones Model

    Science.gov (United States)

    Okamoto, Kazuma; Fuchizaki, Kazuhiro

    2017-03-01

    The critical parameters of the modified Lennard-Jones system were examined. The isothermal-isochoric ensemble was generated by conducting a molecular dynamics simulation for the system consisting of 6912, 8788, 10976, and 13500 particles. The equilibrium between the liquid and vapor phases was judged from the chemical potential of both phases upon establishing the coexistence envelope, from which the critical temperature and density were obtained invoking the renormalization group theory. The finite-size scaling enabled us to finally determine the critical temperature, pressure, and density as Tc = 1.0762(2), pc = 0.09394(17), and ρc = 0.331(3), respectively.

  3. Immunogenicity of the P-8 amastigote antigen in the experimental model of canine visceral leishmaniasis

    OpenAIRE

    Carrillo, E.; S. Ahmed; Goldsmith-Pestana, K.; Nieto, J; Y Osorio; Travi,B; Moreno, J; McMahon-Pratt, D

    2006-01-01

    The P-8 proteoglycolipid complex (P-8 PGLC), an amastigote antigen of L. pifanoi, has been demonstrated to induce protection in mouse models, as well as to induce Tc1/Th1-like cellular responses in American cutaneous leishmaniasis patients. Because the immunization with P-8 PGLC in the murine model does not appear to be genetically restricted, we have studied the reactivity of the P-8 PGLC in L. infantum infected dogs. In this study, it is shown that PBMC from experimentally infected dogs (as...

  4. Rapamycin Impairs Antitumor CD8+ T-cell Responses and Vaccine-Induced Tumor Eradication.

    Science.gov (United States)

    Chaoul, Nada; Fayolle, Catherine; Desrues, Belinda; Oberkampf, Marine; Tang, Alexandre; Ladant, Daniel; Leclerc, Claude

    2015-08-15

    The metabolic sensor mTOR broadly regulates cell growth and division in cancer cells, leading to a significant focus on studies of rapamycin and its analogues as candidate anticancer drugs. However, mTOR inhibitors have failed to produce useful clinical efficacy, potentially because mTOR is also critical in T cells implicated in immunosurveillance. Indeed, recent studies using rapamycin have demonstrated the important role of mTOR in differentiation and induction of the CD8+ memory in T-cell responses associated with antitumor properties. In this study, we demonstrate that rapamycin harms antitumor immune responses mediated by T cells in the setting of cancer vaccine therapy. Specifically, we analyzed how rapamycin affects the antitumor efficacy of a human papilloma virus E7 peptide vaccine (CyaA-E7) capable of eradicating tumors in the TC-1 mouse model of cervical cancer. In animals vaccinated with CyaA-E7, rapamycin administration completely abolished recruitment of CD8+ T cells into TC-1 tumors along with the ability of the vaccine to reduce infiltration of T regulatory cells and myeloid-derived suppressor cells. Moreover, rapamycin completely abolished vaccine-induced cytotoxic T-cell responses and therapeutic activity. Taken together, our results demonstrate the powerful effects of mTOR inhibition in abolishing T-cell-mediated antitumor immune responses essential for the therapeutic efficacy of cancer vaccines.

  5. ATF3 expression is induced by low glucose in pancreatic α and β cells and regulates glucagon but not insulin gene transcription.

    Science.gov (United States)

    Lee, Yong-Soo; Kobayashi, Masaki; Kikuchi, Osamu; Sasaki, Tsutomu; Yokota-Hashimoto, Hiromi; Susanti, Vina Yanti; Ido Kitamura, Yukari; Kitamura, Tadahiro

    2014-01-01

    The pancreas is critical for maintaining glucose homeostasis. Activating transcription factor 3 (ATF3) is an adaptive response transcription factor. There are major discrepancies in previous reports on pancreatic ATF3; therefore, its role in the pancreas is unclear. To better elucidate the role of ATF3 in the pancreas, we conducted in vitro studies using pancreatic α and β cell lines, and also evaluated the use of ATF3 antibodies for immunohistochemistry. We determined ATF3 expression was increased by low glucose and decreased by high glucose in both αTC-1.6 and βTC3 cells. We also showed that adenovirus-mediated ATF3 overexpression increased glucagon promoter activity and glucagon mRNA levels in αTC-1.6 cells; whereas, it had no effect on insulin promoter activity and insulin mRNA levels in βTC3 cells. Although immunostaining with the C-19 ATF3 antibody demonstrated predominant expression in α cells rather than β cells, ATF3 staining was still detected in ATF3 knockout mice as clearly as in control mice. On the other hand, another ATF3 antibody (H-90) detected ATF3 in both α cells and β cells, and was clearly diminished in ATF3 knockout mice. These results indicate that previous discrepancies in ATF3 expression patterns in the pancreas were caused by the varying specificities of the ATF3 antibodies used, and that ATF3 is actually expressed in both α cells and β cells.

  6. Observation of reconnection pulses by Cluster and Double Star

    Directory of Open Access Journals (Sweden)

    X. H. Deng

    2005-11-01

    Full Text Available During a reconnection event on 7 August 2004, Cluster and Double Star (TC-1 were near the neutral sheet and simultaneously detected the signatures of the reconnection pulses. AT 22:59 UT tailward flow followed by earthward flow was detected by Cluster at about 15 RE, while earthward plasma flow followed by tailward flow was observed by TC-1 at about 10 RE. During the flow reversal from tailward to earthward, the magnetic field Bz changed sign from mainly negative values to positive, and the X component of the magnetic curvature vector switched sign from the tailward direction to the earthward direction, which indicates that the reconnection site (X-line moved tailward past the Cluster constellation. By using multi-point analysis and observation of energetic electron and ion flux, we study the movement and structure of the current sheet and discuss the braking effect of the earthward flow bursts in the inner magnetosphere.

  7. Combination of treatment with death receptor 5-specific antibody with therapeutic HPV DNA vaccination generates enhanced therapeutic anti-tumor effects.

    Science.gov (United States)

    Tseng, Chih Wen; Monie, Archana; Trimble, Cornelia; Alvarez, Ronald D; Huh, Warner K; Buchsbaum, Donald J; Straughn, J Michael; Wang, Mei-Cheng; Yagita, Hideo; Hung, Chien-Fu; Wu, T-C

    2008-08-12

    There is currently a vital need for the development of novel therapeutic strategies for the control of advanced stage cancers. Antigen-specific immunotherapy and the employment of antibodies against the death receptor 5 (DR5) have emerged as two potentially promising strategies for cancer treatment. In the current study, we hypothesize that the combination of treatment with the anti-DR5 monoclonal antibody, MD5-1 with a DNA vaccine encoding calreticulin (CRT) linked to human papillomavirus type 16 (HPV-16) E7 antigen (CRT/E7(detox)) administered via gene gun would lead to further enhancement of E7-specific immune responses as well as anti-tumor effects. Our results indicated that mice bearing the E7-expressing tumor, TC-1 treated with MD5-1 monoclonal antibody followed by CRT/E7(detox) DNA vaccination generated the most potent therapeutic anti-tumor effects as well as highest levels of E7-specific CD8+ T cells among all the groups tested. In addition, treatment with MD5-1 monoclonal antibody was capable of rendering the TC-1 tumor cells more susceptible to lysis by E7-specific cytotoxic T lymphocytes. Our findings serve as an important foundation for future clinical translation.

  8. Visualization of glucagon secretion from pancreatic α cells by bioluminescence video microscopy: Identification of secretion sites in the intercellular contact regions.

    Science.gov (United States)

    Yokawa, Satoru; Suzuki, Takahiro; Inouye, Satoshi; Inoh, Yoshikazu; Suzuki, Ryo; Kanamori, Takao; Furuno, Tadahide; Hirashima, Naohide

    2017-04-15

    We have firstly visualized glucagon secretion using a method of video-rate bioluminescence imaging. The fusion protein of proglucagon and Gaussia luciferase (PGCG-GLase) was used as a reporter to detect glucagon secretion and was efficiently expressed in mouse pancreatic α cells (αTC1.6) using a preferred human codon-optimized gene. In the culture medium of the cells expressing PGCG-GLase, luminescence activity determined with a luminometer was increased with low glucose stimulation and KCl-induced depolarization, as observed for glucagon secretion. From immunochemical analyses, PGCG-GLase stably expressed in clonal αTC1.6 cells was correctly processed and released by secretory granules. Luminescence signals of the secreted PGCG-GLase from the stable cells were visualized by video-rate bioluminescence microscopy. The video images showed an increase in glucagon secretion from clustered cells in response to stimulation by KCl. The secretory events were observed frequently at the intercellular contact regions. Thus, the localization and frequency of glucagon secretion might be regulated by cell-cell adhesion.

  9. Kosterlitz-Thouless phase transition of the axial next-nearest-neighbor Ising model in two dimensions

    Science.gov (United States)

    Shirakura, T.; Matsubara, F.; Suzuki, N.

    2014-10-01

    The spin structure of an axial next-nearest-neighbor Ising (ANNNI) model in two dimensions (2D) is a renewed problem because different Monte Carlo (MC) simulation methods predicted different spin orderings. The usual equilibrium simulation predicts the occurrence of a floating incommensurate (IC) Kosterlitz-Thouless (KT) type phase, which never emerges in non-equilibrium relaxation (NER) simulations. In this paper, we first examine previously published results of both methods, and then investigate a higher transition temperature Tc1 between the IC and paramagnetic phases. In the usual equilibrium simulation, we calculate the chain magnetization on larger lattices (up to 512×512 sites) and estimate Tc1≈1.16J with frustration ratio κ (≡-J2/J1)=0.6. We examine the nature of the phase transition in terms of the Binder ratio gL of spin overlap functions and the correlation-length ratio ξ /L. In the NER simulation, we observe the spin dynamics in equilibrium states by means of an autocorrelation function and also observe the chain magnetization relaxations from the ground and disordered states. These quantities exhibit an algebraic decay at T ≲1.17J. We conclude that the two-dimensional ANNNI model actually admits an IC phase transition of the KT type.

  10. Transposon Invasion of the Paramecium Germline Genome Countered by a Domesticated PiggyBac Transposase and the NHEJ Pathway

    Directory of Open Access Journals (Sweden)

    Emeline Dubois

    2012-01-01

    Full Text Available Sequences related to transposons constitute a large fraction of extant genomes, but insertions within coding sequences have generally not been tolerated during evolution. Thanks to their unique nuclear dimorphism and to their original mechanism of programmed DNA elimination from their somatic nucleus (macronucleus, ciliates are emerging model organisms for the study of the impact of transposable elements on genomes. The germline genome of the ciliate Paramecium, located in its micronucleus, contains thousands of short intervening sequences, the IESs, which interrupt 47% of genes. Recent data provided support to the hypothesis that an evolutionary link exists between Paramecium IESs and Tc1/mariner transposons. During development of the macronucleus, IESs are excised precisely thanks to the coordinated action of PiggyMac, a domesticated piggyBac transposase, and of the NHEJ double-strand break repair pathway. A PiggyMac homolog is also required for developmentally programmed DNA elimination in another ciliate, Tetrahymena. Here, we present an overview of the life cycle of these unicellular eukaryotes and of the developmentally programmed genome rearrangements that take place at each sexual cycle. We discuss how ancient domestication of a piggyBac transposase might have allowed Tc1/mariner elements to spread throughout the germline genome of Paramecium, without strong counterselection against insertion within genes.

  11. Single-particle and collective mode couplings associated with 1- and 2-directional electronic ordering in metallic RTe3 (R=Ho,Dy,Tb).

    Science.gov (United States)

    Yusupov, R V; Mertelj, T; Chu, J-H; Fisher, I R; Mihailovic, D

    2008-12-12

    The coupling of phonons with collective modes and single-particle gap excitations associated with one- (1d) and two-directional (2d) electronically driven charge-density wave (CDW) ordering in metallic RTe3 is investigated as a function of rare-earth ion chemical pressure (R=Tb,Dy,Ho) using femtosecond pump-probe spectroscopy. From the T dependence of the CDW gap DeltaCDW and the amplitude mode, we find that while the transition to a 1d-CDW ordered state at Tc1 initially proceeds in an exemplary mean-field-like fashion, below Tc1, DeltaCDW is depressed and departs from the mean-field behavior. The effect is apparently triggered by resonant mode mixing of the amplitude mode with a totally symmetric phonon at 1.75 THz. At low temperatures, when the state evolves into a 2d-CDW ordered state at Tc2 in the DyTe3 and HoTe3, additional much weaker mode mixing is evident but no soft mode is observed.

  12. CTLA-4 (CD152) enhances the Tc17 differentiation program.

    Science.gov (United States)

    Pick, Jonas; Arra, Aditya; Lingel, Holger; Hegel, J Kolja; Huber, Magdalena; Nishanth, Gopala; Jorch, Gerhard; Fischer, Klaus-Dieter; Schlüter, Dirk; Tedford, Kerry; Brunner-Weinzierl, Monika C

    2014-07-01

    Although CD8(+) T cells that produce IL-17 (Tc17 cells) have been linked to host defense, Tc17 cells show reduced cytotoxic activity, which is the characteristic function of CD8(+) T cells. Here, we show that CTLA-4 enhances the frequency of IL-17 in CD8(+) T cells, indicating that CTLA-4 (CD152) specifically promotes Tc17 differentiation. Simultaneous stimulation of CTLA-4(+/+) and CTLA-4(-/-) T cells in cocultures and agonistic CTLA-4 stimulation unambiguously revealed a cell-intrinsic mechanism for IL-17 control by CTLA-4. The quality of CTLA-4-induced Tc17 cells was tested in vivo, utilizing infection with the facultative intracellular bacterium Listeria monocytogenes (LM). Unlike CTLA-4(+/+) Tc17 cells, CTLA-4(-/-) were nearly as efficient as Tc1 CTLA-4(+/+) cells in LM clearance. Additionally, adoptively transferred CTLA-4(-/-) Tc17 cells expressed granzyme B after rechallenge, and produced Tc1 cytokines such as IFN-γ and TNF-α, which strongly correlate with bacterial clearance. CTLA-4(+/+) Tc17 cells demonstrated a high-quality Tc17 differentiation program ex vivo, which was also evident in isolated IL-17-secreting Tc17 cells, with CTLA-4-mediated enhanced upregulation of Tc17-related molecules such as IL-17A, RORγt, and IRF-4. Our results show that CTLA-4 promotes Tc17 differentiation that results in robust Tc17 responses. Its inactivation might therefore represent a central therapeutic target to enhance clearance of infection.

  13. Migration of activated CD8(+) T lymphocytes to sites of viral infection does not require endothelial selectins

    DEFF Research Database (Denmark)

    Bartholdy, C; Marker, O; Thomsen, Allan Randrup

    2000-01-01

    Using mice deficient of E-selectin and E/P-selectin, we have studied the requirement for endothelial selectins in extravasation of leukocytes at sites of viral infection, with major emphasis on the recruitment of virus-specific T(C)1 cells. Lymphocytic choriomeningitis virus (LCMV)-induced mening......Using mice deficient of E-selectin and E/P-selectin, we have studied the requirement for endothelial selectins in extravasation of leukocytes at sites of viral infection, with major emphasis on the recruitment of virus-specific T(C)1 cells. Lymphocytic choriomeningitis virus (LCMV...... or marginal reduction was found in E/P-sel -/- mice, compared with wild-type mice after local challenge with virus or immunodominant viral MHC class I restricted peptide, respectively. Similar results were obtained after adoptive transfer of wild-type effector cells into E/P-sel -/- recipients, whereas...... footpad swelling was markedly decreased in P-sel/ICAM-1 -/- and ICAM-1 -/- recipients. LCMV-induced footpad swelling was completely inhibited in ICAM-deficient mice transfused with donor cell preincubated with soluble VCAM-1-Ig chimeric protein. Taken together, the current findings strongly indicate...

  14. Study on Identification and Degradation Characteristics of An Atrazine-degrading Strain L-1%一株阿特拉津降解菌株L-1的鉴定和降解特性研究

    Institute of Scientific and Technical Information of China (English)

    冉治霖; 朱静

    2013-01-01

    [Objective] The paper was to identify an atrazine-degrading strain and study its degradation characteristics.[Method] Atrazine-degrading strains were isolated by sludge culture of Municipal sewage treatment plant.The strains were identified by the analysis of physiological and biochemical tests and 16S rDNA gene sequence,and the indoor degradation effects were optimized.[Result] An atrazine-degrading strain L-1 was isolated.The gene of L-1 and Arthrobacter strain were similar with homology more than 99%,and combining with physiological and biochemical methods,the strain was identified as Arthrobacter sp.The best carbon source of the atrazine degradation medium was glucose,and the best adding amount was 3 g/L.Under these conditions,the degradation rate was up to 94.8% 96 h after the L-1 inoculated in atrazine inorganic salts medium (atrazine concentration for 500 mg/L).[Conclusion] The study laid a foundation for the further study of atrazine-degrading strains and the application in the bioremediation of ATZ polluted water.%[目的]鉴定1株阿特拉津(ATZ)降解菌株;并对其降解特性进行研究.[方法]通过对取自城市污水处理厂的污泥进行驯化培养,分离能够降解除草剂ATZ的菌株;通过16S rDNA基因序列分析及生理生化试验对菌株进行鉴定,并对其室内降解效果进行优化.[结果]试验分离到1株能降解ATZ的菌株L-1,该菌株与Arthrobacter菌株基因相似,同源性达99%以上,结合生理生化方法,确定该菌株为节杆菌(Arthrobacter sp.);L-1降解ATZ时培养基的最佳碳源为葡萄糖,最佳加入量为3g/L.在此条件下,将L-1接种于阿特拉津无机盐培养基(ATZ浓度为500 mg/L)96 h后降解率达94.8%.[结论]该研究为进一步研究ATZ降解菌株及其在ATZ微污染水体生物修复中的应用奠定了基础.

  15. 3株深海细菌的生理及分子生物学鉴定%Identification of 3 strains of deep-sea bacteria by physiologi-cal and molecular biological methods

    Institute of Scientific and Technical Information of China (English)

    侯兆君; 张明; 蒋富清; 张宝玉

    2013-01-01

      从西菲律宾海底4954 m深的沉积物中分离到一批深海细菌,对其中编号为B2、B5、B6的3株细菌进行了生理、光学显微镜和扫描电镜观察,并且进行了分子水平鉴定。菌落呈圆球形,光滑,3株菌均带有颜色, B6菌呈乳白色, B2和 B5菌分别呈现鲜艳的橙色和红色。扫描电镜观察表明 B2和B6呈杆状,但B6菌外面覆有鞘膜, B5菌呈球状。生理实验表明,3株菌温度生长范围在37℃以下,最适生长温度分别为20、28、28℃,属于耐冷菌范畴。pH耐受范围为6~14,最适pH分别为8、8、12。3株细菌16S rRNA基因序列同源性分析表明,它们分属于芽孢杆菌(Bacillus)、节杆菌(Arthrobacter)、蛋白菌(Acinetobacter)3个不同的菌属。%  The investigated samples were collected from old, sediment-covered lava flows in the rift valley at a water depth around 4 954 m. Three strains of bacteria were purified and denoted as B2, B5 and B6. They were characterized with physiological, microscope, scanning electron microscope (SEM) and molecular methods. The bacteria were round, smooth and with different color. B6 showed ivory yellow, while B2 and B5 showed vivid or-ange and red, respectively. SEM results showed that B2 and B6 is rod shape, but B6 is coved with tunica vaginalis. B5 is globular. The growth temperature of these three strains is below 37 ℃, the optimum growth temperature for B2, B5 and B6 was 20, 28 and 28℃, respectively, The pH tolerance range was 6~14, and the optimum pH was 8, 8 and 12, respectively. 16S rRNA sequence analysis showed that they belong to 3 different genus, and they are Bacil-lus (Bacillus), Arthrobacter (Arthrobacter) and protein in bacteria (Acinetobacter), respectively.

  16. 一株阿特拉津降解菌的分离鉴定及降解特性%Isolation,identincation and Characterlzation of an atrazine-degrading strain

    Institute of Scientific and Technical Information of China (English)

    闫彩芳; 娄旭; 洪青; 李顺鹏

    2011-01-01

    从农药厂废水处理池的活性污泥中分离到一株阿特拉津降解茵X-4,根据其生理生化特性和16S rRNA基因序列相似性分析,将其初步鉴定为节杆菌属(Arthrobacter sp.).该茵能以阿特拉津为唯一碳氮源生长,42 h内对100 mg/L的阿特拉津降解效果为95.7%,降解阿特拉津的最适温度为30℃,pH为7.0.该菌对多种重金属离子都存在抗性,显示了其在去除阿特拉津和重金属复合污染方面的应用潜力.对其降解基因的初步研究显示,该菌含有trzN、atzB和atzC 3个阿特拉津降解相关基因.%A bacteria strain X-4 capable of degrading atrazine was isolated from the activated sludge from the wastewater treating system of an atrazme manufacturer. It was preliminarily identified as Arthrobacter sp. according to its physiological & biochemical characteristics and the analysis of its 16S rRNA gene sequence. This strain could use atrazine as sole carbon and nitrogen source, and degrade 95.7% of 100 mg/L atrazine within 42 h. The optimal pH and temperature for the degradation were 30 ℃ and pH 7.0, respectively. Strain X-4 could tolerate many kinds of heavy metals, which showed its potential in treating the co-contamination of atrazine and heavy metals. The atrazine-degrading related genes of strain X-4 were the combination of trzN, atzB and atzC.

  17. Isolation and Determination of Nitrogen-fixing Bacteria in Rhizosphere of Main Tree Species in Chifeng, Inner Mongolia%内蒙古赤峰地区主要树种根际固氮菌的分离和鉴定

    Institute of Scientific and Technical Information of China (English)

    田国杰; 王晗; 陈立红

    2016-01-01

    用阿须贝培养基对内蒙古赤峰市4个地点的5种树木根际土壤样品中的固氮菌进行分离、提纯,共获得116株固氮菌株,基于16S rDNA序列最大相似性进行了分析鉴定.结果表明:红山区落叶松根际土壤中的固氮菌共有6个属,以芽孢杆菌属(Bacillus)和类芽孢杆菌属(Paenibacillus elgii)为主;松山区樟子松根际土壤中的固氮菌共有8个属,以节细菌属(Arthrobacter)和链霉菌属(Streptomyces)为主.旺业甸落叶松根际土壤中的固氮菌共有6个属,以芽孢杆菌属(Bacillus)和根癌土壤杆菌属(Agrobacterium tumefaciens)为主;旺业甸白桦根际土壤中的固氮菌共有4个属,假单胞菌属(Pseudomonas)为主.红山区白皮松根际土壤中的固氮菌共有5个属,以假单胞菌属(Pseudomonas)和芽孢杆菌属(Bacillus)为主.新城区白皮松根际土壤中的固氮菌共有10个属,以假单胞菌属(Pseudomonas)、芽孢杆菌属(Bacillus)和类芽孢杆菌属(Paenibacillus elgii为主.从固氮菌种群分布看,新城区白皮松根际土壤中固氮菌种群分布最为广泛,从中分离的19株固氮菌分布在10个属内;节细菌属(Arthrobacter)固氮菌分布最为广泛,存在5种树种的根际土壤中.

  18. 贺兰山地区油松根际固氮菌的多样性研究%Diversity of nitrogen-fixing bacteria isolated from Pinus tabulaeformis in Helan Mountains

    Institute of Scientific and Technical Information of China (English)

    牛艳芳; 陈立红; 闫伟

    2016-01-01

    The diversity and community structure of nitrogen-fixing bacteria isolated from Pinus tabulaeformis rhizosphere in Helan Mountains was studied. Nitrogen-fixing bacteria from rhizosphere soil were isolated and purified by Ashby’ s Medium,the 16S rDNA gene of nitrogen-fixing bacteria was amplified using primers 27f/1492r and sequenced,the align-ment of 16S rDNA sequences was conducted by DNAMAN 6.0,and the neighbor-joining phylogenetic tree was construc-ted by MEGA 4.0 software. The results showed that nitrogen-fixing bacteria isolated from P. tabulaeformis belonged to nine groups,which were Pseudomonas,Bacillus,Phyllobacterium,Arthrobacter,Rhizobium,Paenibacillus,Sphin-gomonas,Caulobacter,Pedobacter,and Pseudomonas,Bacillus,Phyllobacterium,Arthrobacter were dominant groups.The results indicated that nitrogen-fixing bacteria from P. tabulaeformis in Helan Mountains have rich diversity.%对贺兰山北寺自然保护区油松(Pinus tabulaeformis)的根际土壤固氮菌多样性和群落结构进行研究。采用阿须贝培养基对土壤中的固氮菌进行分离和纯化,用通用引物27f/1492r对固氮菌进行16S rDNA扩增并测序,应用DNAMAN 6.0软件进行多序列比对,用MEGA 4.0软件构建聚类树。结果表明:从贺兰山北寺油松根际土壤中分离出的固氮菌属于假单胞菌属(Pseudomonas)、芽孢杆菌属(Bacillus)、叶杆菌属(Phyllobacteri-um)、节杆菌属(Arthrobacter)、根瘤菌属(Rhizobium)、类芽孢杆菌属(Paenibacillus)、鞘氨醇单胞菌属(Sphingomonas)、柄细菌属(Caulobacter)、土地杆菌属(Pedobacter)等9个不同的类群,其中假单胞菌属(Pseudomonas)、芽孢杆菌属(Bacillus)、叶杆菌属(Phyllobacterium)、节杆菌属(Arthrobacter)是优势类群。这表明贺兰山北寺地区油松根际土壤中固氮菌具有较丰富的多样性。

  19. Promoting Uranium Immobilization by the Activities of Microbial Phosphatases

    Energy Technology Data Exchange (ETDEWEB)

    Martinez, Robert J.; Beazley, Melanie J.; Wilson, Jarad J.; Taillefert, Martial; Sobecky, Patricia A.

    2005-04-05

    The overall goal of this project is to examine the role of nonspecific phosphohydrolases present in naturally occurring subsurface microorganisms for the purpose of promoting the immobilization of radionuclides through the production of uranium [U(VI)] phosphate precipitates. Specifically, we hypothesize that the precipitation of U(VI) phosphate minerals may be promoted through the microbial release and/or accumulation of PO{sub 4}{sup 3-}. During this phase of the project we have been conducting assays to determine the effects of pH, inorganic anions and organic ligands on U(VI) mineral formation and precipitation when FRC bacterial isolates were grown in simulated groundwater medium. The molecular characterization of FRC isolates has also been undertaken during this phase of the project. Analysis of a subset of gram-positive FRC isolates cultured from FRC soils (Areas 1, 2 and 3) and background sediments have indicated a higher percentage of isolates exhibiting phosphatase phenotypes (i.e., in particular those surmised to be PO{sub 4}{sup 3-}-irrepressible) relative to isolates from the reference site. A high percentage of strains that exhibited such putatively PO{sub 4}{sup 3-}-irrepressible phosphatase phenotypes were also resistant to the heavy metals lead and cadmium. Previous work on FRC strains, including Arthrobacter, Bacillus and Rahnella spp., has demonstrated differences in tolerance to U(VI) toxicity (200 {micro}M) in the absence of organophosphate substrates. For example, Arthrobacter spp. exhibited the greatest tolerance to U(VI) while the Rahnella spp. have been shown to facilitate the precipitation of U(VI) from solution and the Bacillus spp. demonstrate the greatest sensitivity to acidic conditions and high concentrations of U(VI). PCR-based detection of FRC strains are being conducted to determine if non-specific acid phosphatases of the known molecular classes [i.e., classes A, B and C] are present in these FRC isolates. Additionally, these

  20. 土壤中降解烟碱细菌多样性研究%Analysis of diversity of nicotine-degrading bacteria isolated from soil

    Institute of Scientific and Technical Information of China (English)

    刘飞; 夏振远; 白江兰; 陈泽斌; 雷丽萍; 杨根华; 陈海如

    2012-01-01

    302 bacteria strains were isolated by mineral salt medium supplemented with 0. 1% nicotine as sole carbon and nitrogen sources from 59 soil samples from Puer, Yuxi, Qujing, Chuxiong and Dali districts in Yunnan province. Based on sequence analysis of 16S rDNA, 302 strains were grouped into four phyla, i. e. , Firmicutes, Actinobacteria, Protcobacteria and Bacteroidetes, and were further clustered into 15 genera; Arthrobactcr, Bacillus, Paenibacillus, Micro-coccus, Cellulomonas, Pseudomonas, Brachybaclerium, Rhizobium, Sinorhizobium, Agrobacterium, Acinetobacter, En-sifer, Janibacter, Sphingobacterium and Balneimonas. Results showed that Arthrobacter, Bacillus and Paenibacillus were the dominant nicotine-degrading bacteria groups.%为了解烟草根围土壤中可降解烟碱细菌的多样性,采用0.1%的烟碱为唯一碳源和氮源的无机盐培养基,从云南省普洱、玉溪、曲靖、楚雄、大理五个地区59个土样中分离得到302株降解烟碱细菌;16S rDNA序列分析结果表明,302株菌分属厚壁菌门(Firmicutes)、放线菌门(Actinobacteria)、变形菌 门(Proteobacteria)和拟杆菌门(Bacteroidetes)四大类群,分别与数据库中已知的节杆菌属(Arthrobacter)、芽孢杆菌属(Bacillus)、类芽孢杆菌属(Paenibacillus)、微球菌属(Micrococcus)、纤维单胞菌属(Cellulomonas)、假单胞菌属(Pseudomonas)、短状杆菌属(Brachybacterium)、根瘤菌属(Rhizobium)、中华根瘤菌属(Sinorhizobium)、土壤杆菌属(Agrobacterium)、不动杆菌属(Acinetobacter)、剑菌属(Ensifer)、两面神菌属(Janibacter)、鞘脂杆菌属(Sphingobacterium)、Balneimonas具有较高的相似性.其中节杆菌属、芽孢杆菌属和类芽孢杆菌属为土壤中降解烟碱细菌的优势菌属.

  1. Studies on the Catalytic Properties of Partially Purified Alkaline Proteases from Some Selected Microorganisms

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    Titilayo Olufunke Femi-Ola

    2012-09-01

    Full Text Available Aims: The research was done to study the conditions enhancing catalytic activities of alkaline proteases from Vibro sp., Lactobacillus brevis, Zymomonas sp., Athrobacter sp., Corynebacterium sp. and Bacillus subtilis.Methodology and Results: The proteolytic enzymes were purified in 2-step procedures involving ammonium sulphate precipitation and sephadex G-150 gel permeation chromatography. The upper and lower limits for the specific activities of proteases from the selected microorganisms were estimated at 20.63 and 47.51 units/mg protein with Zymomonas protease having the highest specific activity towards casein as its substrate and purification fold of 3.46, while that ofLactobacillus brevis protease was 8.06. The native molecular weights of these active proteins ranged from 30.4 to 45.7 kDa with Athrobacter sp. protease having the highest weight for its subunits. The proteolytic enzymes had optimum pH range of 8 to 10 and temperature range of 50 to 62 ºC accounting for the percentage relative activity range of 75 to 94% and 71 to 84 % respectively. The activities of Lactobacillus brevis and Bacillus subtilis proteases were maximum at pH 9 and 10 respectively. Lactobacillus brevis protease activity was maximum at temperature of 62 ºC, while beyond this value, a general thermal instability of these active proteins was observed. At above 70 ºC, the catalytic activities of Corynebacterium sp., Vibrio sp., Zymomonas sp. and Arthrobacter sp. proteases were progressively reduced over a period of 120 min of incubation, while Bacillus subtlis and Lactobacillus brevis proteases were relatively stable. Effect of metal ions was investigated on the catalytic activity of protease from the microorganisms. Lactobacillus brevis,Zymomonas sp., Arthrobacter sp., Corynebacterium sp. and Bacillus subtilis protease activities were strongly activated by metal ions such as Ca+2 and Mg+2. Enzyme activities were inhibited strongly by Cu2+ and Hg2+ but were not

  2. Cultivation-Based and Molecular Assessment of Bacterial Diversity in the Rhizosheath of Wheat under Different Crop Rotations.

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    Muhammad Tahir

    Full Text Available A field study was conducted to compare the formationand bacterial communities of rhizosheaths of wheat grown under wheat-cotton and wheat-rice rotation and to study the effects of bacterial inoculation on plant growth. Inoculation of Azospirillum sp. WS-1 and Bacillus sp. T-34 to wheat plants increased root length, root and shoot dry weight and dry weight of rhizosheathsoil when compared to non-inoculated control plants, and under both crop rotations. Comparing both crop rotations, root length, root and shoot dry weight and dry weight of soil attached with roots were higher under wheat-cotton rotation. Organic acids (citric acid, malic acid, acetic acid and oxalic acid were detected in rhizosheaths from both rotations, with malic acid being most abundant with 24.8±2 and 21.3±1.5 μg g(-1 dry soil in wheat-cotton and wheat-rice rotation, respectively. Two sugars (sucrose, glucose were detected in wheat rhizosheath under both rotations, with highest concentrations of sucrose (4.08±0.5 μg g(-1 and 7.36±1.0 μg g(-1 and glucose (3.12±0.5 μg g(-1 and 3.01± μg g(-1 being detected in rhizosheaths of non-inoculated control plants under both rotations. Diversity of rhizosheath-associated bacteria was evaluated by cultivation, as well as by 454-pyrosequencing of PCR-tagged 16S rRNA gene amplicons. A total of 14 and 12 bacterial isolates predominantly belonging to the genera Arthrobacter, Azospirillum, Bacillus, Enterobacter and Pseudomonaswere obtained from the rhizosheath of wheat grown under wheat-cotton and wheat-rice rotation, respectively. Analysis of pyrosequencing data revealed Proteobacteria, Bacteriodetes and Verrucomicrobia as the most abundant phyla in wheat-rice rotation, whereas Actinobacteria, Firmicutes, Chloroflexi, Acidobacteria, Planctomycetes and Cyanobacteria were predominant in wheat-cotton rotation. From a total of 46,971 sequences, 10.9% showed ≥97% similarity with 16S rRNA genes of 32 genera previously shown to include

  3. Correlation models between environmental factors and bacterial resistance to antimony and copper.

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    Zunji Shi

    Full Text Available Antimony (Sb and copper (Cu are toxic heavy metals that are associated with a wide variety of minerals. Sb(III-oxidizing bacteria that convert the toxic Sb(III to the less toxic Sb(V are potentially useful for environmental Sb bioremediation. A total of 125 culturable Sb(III/Cu(II-resistant bacteria from 11 different types of mining soils were isolated. Four strains identified as Arthrobacter, Acinetobacter and Janibacter exhibited notably high minimum inhibitory concentrations (MICs for Sb(III (>10 mM,making them the most highly Sb(III-resistant bacteria to date. Thirty-six strains were able to oxidize Sb(III, including Pseudomonas-, Comamonas-, Acinetobacter-, Sphingopyxis-, Paracoccus- Aminobacter-, Arthrobacter-, Bacillus-, Janibacter- and Variovorax-like isolates. Canonical correspondence analysis (CCA revealed that the soil concentrations of Sb and Cu were the most obvious environmental factors affecting the culturable bacterial population structures. Stepwise linear regression was used to create two predictive models for the correlation between soil characteristics and the bacterial Sb(III or Cu(II resistance. The concentrations of Sb and Cu in the soil was the significant factors affecting the bacterial Sb(III resistance, whereas the concentrations of S and P in the soil greatly affected the bacterial Cu(II resistance. The two stepwise linear regression models that we derived are as follows: MIC(Sb(III=606.605+0.14533 x C(Sb+0.4128 x C(Cu and MIC((Cu(II=58.3844+0.02119 x C(S+0.00199 x CP [where the MIC(Sb(III and MIC(Cu(II represent the average bacterial MIC for the metal of each soil (μM, and the C(Sb, C(Cu, C(S and C(P represent concentrations for Sb, Cu, S and P (mg/kg in soil, respectively, p<0.01]. The stepwise linear regression models we developed suggest that metals as well as other soil physicochemical parameters can contribute to bacterial resistance to metals.

  4. Quinone-induced inhibition of urease: elucidation of its mechanisms by probing thiol groups of the enzyme.

    Science.gov (United States)

    Zaborska, Wiesława; Krajewska, Barbara; Kot, Mirosława; Karcz, Waldemar

    2007-06-01

    In this work we studied the reaction of four quinones, 1,4-benzoquinone (1,4-BQ), 2,5-dimethyl-1,4-benzoquinone (2,5-DM-1,4-BQ), tetrachloro-1,4-benzoquinone (TC-1,4-BQ) and 1,4-naphthoquinone (1,4-NQ) with jack bean urease in phosphate buffer, pH 7.8. The enzyme was allowed to react with different concentrations of the quinones during different incubation times in aerobic conditions. Upon incubation the samples had their residual activities assayed and their thiol content titrated. The titration carried out with use of 5,5'-di-thiobis(2-nitrobenzoic) acid was done to examine the involvement of urease thiol groups in the quinone-induced inhibition. The quinones under investigation showed two distinct patterns of behaviour, one by 1,4-BQ, 2,5-DM-1,4-BQ and TC-1,4-BQ, and the other by 1,4-NQ. The former consisted of a concentration-dependent inactivation of urease where the enzyme-inhibitor equilibrium was achieved in no longer than 10min, and of the residual activity of the enzyme being linearly correlated with the number of modified thiols in urease. We concluded that arylation of the thiols in urease by these quinones resulting in conformational changes in the enzyme molecule is responsible for the inhibition. The other pattern of behaviour observed for 1,4-NQ consisted of time- and concentration-dependent inactivation of urease with a nonlinear residual activity-modified thiols dependence. This suggests that in 1,4-NQ inhibition, in addition to the arylation of thiols, operative are other reactions, most likely oxidations of thiols provoked by 1,4-NQ-catalyzed redox cycling. In terms of the inhibitory strength, the quinones studied formed a series: 1,4-NQ approximately 2,5-DM-1,4-BQ<1,4-BQ<TC-1,4-BQ.

  5. Peripheral Tc17 and Tc17/Interferon-γ Cells are Increased and Associated with Lung Function in Patients with Chronic Obstructive Pulmonary Disease

    Institute of Scientific and Technical Information of China (English)

    Wei-Han Xu; Xiao-Ling Hu; Xiao-Fang Liu; Peng Bai; Yong-Chang Sun

    2016-01-01

    Background:Chronic obstructive pulmonary disease (COPD) is characterized by progressive loss of lung function and local and systemic inflammation,in which CD8+ T-cells are believed to play a key role.Activated CD8+ T-cells differentiate into distinct subpopulations,including interferon-γ(IFN-γ)-producing Tc 1 and interleukin (IL)-17-producing Tc 1 7 cells.Recent evidence indicates that Tc 17 cells exhibit considerable plasticity and may convert into IL-17/IFN-γ-double producing (Tc1 7/IFN-γ) cells when driven by inflammatory conditions.The aim of this study was to investigate the Tc 17/IFN-γ subpopulation in peripheral blood of patients with COPD and to evaluate their potential roles in this disease.Methods:Peripheral blood samples were collected from 15 never-smokers,23 smokers with normal lung function,and 25 patients with COPD (Global Initiative for Chronic Obstructive Lung Disease 2-4).Proportions of the IL-17/IFN-γ-double expressing subpopulation were assessed using flow cytometry.Plasma concentrations of cytokines favoring Tc 17/IFN-γ differentiation were measured by enzymelinked immunosorbent assay.Results:Patients with COPD had higher proportions of Tc17 cells and Tc17/IFN-γ cells in the peripheral blood than smokers and never-smokers.The plasticity of Tc 17 cells was higher than that of Th 17 cells.The percentages ofTc 17 cells and Tc 17/IFN-γcells showed negative correlations with forced expiratory volume in 1 s % predicted value (r =-0.418,P =0.03;r =-0.596,P =0.002,respectively).The plasma concentrations of IL-6,transforming growth factor-β1,and IL-12 were significantly higher in patients with COPD compared with smokers and never-smokers.Conclusions:Peripheral Tc17 cells are increased and more likely to convert to Tc17/IFN-γ cells in COPD,suggesting that Tc17 cell plasticity may be involved in persistent inflammation of the disease.

  6. Gender differences in the T-cell profiles of the airways in COPD patients associated with clinical phenotypes

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    Forsslund H

    2016-12-01

    Full Text Available Helena Forsslund,1 Mingxing Yang,1 Mikael Mikko,1 Reza Karimi,1 Sven Nyrén,2 Benita Engvall,1 Johan Grunewald,1 Heta Merikallio,1,3 Riitta Kaarteenaho,3–5 Jan Wahlström,1 Åsa M Wheelock,1 C Magnus Sköld1 1Department of Medicine Solna and Centre for Molecular Medicine, Respiratory Medicine Unit, 2Department of Molecular Medicine and Surgery, Karolinska Institutet and Karolinska University Hospital Solna, Stockholm, Sweden; 3Respiratory Research Unit and Medical Research Center Oulu, University of Oulu and Oulu University Hospital, Oulu, Finland; 4Unit of Medicine and Clinical Research, Pulmonary Division, University of Eastern Finland, 5Center for Medicine and Clinical Research, Division of Respiratory Medicine, Kuopio University Hospital, Kuopio, Finland Abstract: T lymphocytes are believed to play an important role in the pathogenesis of chronic obstructive pulmonary disease (COPD. How T cells are recruited to the lungs and contribute to the inflammatory process is largely unknown. COPD is a heterogeneous disease, and discriminating disease phenotypes based on distinct molecular and cellular pathways may provide new approaches for individualized diagnosis and therapies. Bronchoalveolar lavage (BAL and blood samples were obtained from 40 never-smokers, 40 smokers with normal lung function, and 38 COPD patients. T-cell chemokine receptor expression was analyzed with flow cytometry, and soluble BAL cytokines and chemokines were measured using a cytokine multiplex assay. Correlations with gender and clinical characteristics including lung imaging were investigated using multivariate modeling. Th1/Tc1- and Th2/Tc2-associated soluble analytes and T-cell chemokine receptors were analyzed as cumulative Th1/Tc1 and Th2/Tc2 immune responses. A higher expression of chemokine receptor CCR5 on CD8+ T cells in BAL and higher percentage of CXCR3+CD8+ T cells in blood was found in female smokers with COPD compared to those without COPD. CCR5 expression

  7. Immuno-therapy with anti-CTLA4 antibodies in tolerized and non-tolerized mouse tumor models.

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    Jonas Persson

    Full Text Available Monoclonal antibodies specific for cytotoxic T lymphocyte-associated antigen 4 (anti-CTLA4 are a novel form of cancer immunotherapy. While preclinical studies in mouse tumor models have shown anti-tumor efficacy of anti-CTLA4 injection or expression, anti-CTLA4 treatment in patients with advanced cancers had disappointing therapeutic benefit. These discrepancies have to be addressed in more adequate pre-clinical models. We employed two tumor models. The first model is based on C57Bl/6 mice and syngeneic TC-1 tumors expressing HPV16 E6/E7. In this model, the HPV antigens are neo-antigens, against which no central tolerance exists. The second model involves mice transgenic for the proto-oncogen neu and syngeneic mouse mammary carcinoma (MMC cells. In this model tolerance to Neu involves both central and peripheral mechanisms. Anti-CTLA4 delivery as a protein or expression from gene-modified tumor cells were therapeutically efficacious in the non-tolerized TC-1 tumor model, but had no effect in the MMC-model. We also used the two tumor models to test an immuno-gene therapy approach for anti-CTLA4. Recently, we used an approach based on hematopoietic stem cells (HSC to deliver the relaxin gene to tumors and showed that this approach facilitates pre-existing anti-tumor T-cells to control tumor growth in the MMC tumor model. However, unexpectedly, when used for anti-CTLA4 gene delivery in this study, the HSC-based approach was therapeutically detrimental in both the TC-1 and MMC models. Anti-CTLA4 expression in these models resulted in an increase in the number of intratumoral CD1d+ NKT cells and in the expression of TGF-β1. At the same time, levels of pro-inflammatory cytokines and chemokines, which potentially can support anti-tumor T-cell responses, were lower in tumors of mice that received anti-CTLA4-HSC therapy. The differences in outcomes between the tolerized and non-tolerized models also provide a potential explanation for the low efficacy

  8. Contribution of ethylamine degrading bacteria to atrazine degradation in soils.

    Science.gov (United States)

    Smith, Daniel; Crowley, David E

    2006-11-01

    Bacterial communities that cooperatively degrade atrazine commonly consist of diverse species in which the genes for atrazine dechlorination and dealkylation are variously distributed among different species. Normally, the first step in degradation of atrazine involves dechlorination mediated by atzA, followed by stepwise dealkylation to yield either N-ethylammelide or N-isopropylammelide. As the liberated alkylamine moieties are constituents of many organic molecules other than atrazine, it is possible that a large number of alkylamine-degrading bacteria other than those previously described might contribute to this key step in atrazine degradation. To examine this hypothesis, we isolated 82 bacterial strains from soil by plating soil water extracts on agar media with ethylamine as a sole carbon source. Among the relatively large number of isolates, only 3 were able to degrade N-ethylammelide, and in each case were shown to carry the atzB gene and atzC genes. The isolates, identified as Rhizobium leguminosarum, Flavobacterium sp., and Arthrobacter sp., were all readily substituted into an atrazine-degrading consortium to carry out N-ethylammelide degradation. The distribution of these genes among many different species in the soil microbial population suggests that these genes are highly mobile and over time may lead to generation of various atrazine-degrading consortia.

  9. 阿特拉津降解菌SD41的分离鉴定及土壤修复%Experimental Study on Atrazine-degrading Strain SD41:Isolation, Identification and Soil Remediation

    Institute of Scientific and Technical Information of China (English)

    李红梅; 张新建; 李纪顺; 魏艳丽; 陈凯; Bazhanav Dzmitry; 杨合同

    2014-01-01

    从山东省多年施用阿特拉津的农田土壤中分离到一株阿特拉津降解菌SD41,通过形态学、生理生化特征及16S rRNA序列分析初步鉴定为节杆菌属(Arthrobacter sp.).该菌能以阿特拉津为唯一氮源生长,48h内对1 000 mg/L的阿特拉津(pH 7.0)降解率为94.95%,在16~42℃、pH 7~10、0%~3%盐浓度条件下,对阿特拉津都有较高的降解率,外源性氮源对其降解无影响.该菌含有trzN和atzBC 3个阿特拉津降解基因.敏感作物盆栽试验证明,该菌株处理7d能明显恢复小麦的各项生物量指标,具有很好的土壤修复能力,可为阿特拉津的生物修复提供良好的菌种资源.

  10. 寒地黑土中阿特拉津降解菌的筛选及降解特性%Screening and identification of atrazine degrading bacteria and their degradation characteristics from black soil in cold area

    Institute of Scientific and Technical Information of China (English)

    周宁; 王荣娟; 孟庆娟; 张颖

    2008-01-01

    从长期施用阿特拉津的寒地黑土耕层(0~10 cm)取样.利用富集培养的方法,筛选到2株阿特拉津降解菌,编号Z9和Z42.Z9以阿特拉津为惟一碳氮源生长,Z42以阿特拉津为惟一氮源生长,15 d对阿特拉津的降解率分别为77.7%和65.6%.对其初步鉴定并对降解特性进行研究,结果表明,细菌Z9为微杆菌属(Microbacterium sp.),细菌Z42为节杆菌属(Arthrobacter sp.).在室内进行降解条件优化实验,得出2株降解菌对100 mg/L阿特拉津的最佳降解条件为:温度30℃,Z9 pH值为7,Z42 pH值为8.

  11. A critical analysis of kinetic data of 3-hexulosephosphate synthases. Michaelis-Menten or complex characteristics.

    Science.gov (United States)

    Müller, R; Babel, W

    1980-01-01

    Investigations of the 3-hexulosephosphate synthase (HPS) from different methylotrophic bacteria have revealed apparent discrepancies in kinetic behaviour. In all methanol-utilizing species investigated by us the kinetic characteristics showed intermediary plateau regions. Therefore, this behaviour is assumed to be a general feature of the HPS from all non-methane-utilizing methylotrophic bacteria. However, this assumption is in contrast to the results of other authors. Both for Methylomonas M15 (SAHM et al. 1976) and Methylomonas aminofaciens 77a (KATO et al. 1977, 1978) MICHAELIS-MENTEN kinetics of the HPS were stated. To check the validity of our assumption we have analyzed the kinetic data given by others. Indications of the existence of intermediary plateau regions could be found with the enzyme from Arthrobacter globiformis (BYKOVSKAYA and VORONKOV 1977) and Methylomonas aminofaciens 77a (KATO et al. 1978). Furthermore, biphasic ARRHENIUS plots indicate a multiple character of the HPS from these species as could already be demonstrated with the enzyme from Bacterium MB 58 and Pseudomonas oleovorans. In addition, causes which may obscure the detection of intermediary plateau regions are demonstrated.

  12. Brazilian Cerrado Soil Actinobacteria Ecology

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    Monique Suela Silva

    2013-01-01

    Full Text Available A total of 2152 Actinobacteria strains were isolated from native Cerrado (Brazilian Savannah soils located in Passos, Luminárias, and Arcos municipalities (Minas Gerais State, Brazil. The soils were characterised for chemical and microbiological analysis. The microbial analysis led to the identification of nine genera (Streptomyces, Arthrobacter, Rhodococcus, Amycolatopsis, Microbacterium, Frankia, Leifsonia, Nakamurella, and Kitasatospora and 92 distinct species in both seasons studied (rainy and dry. The rainy season produced a high microbial population of all the aforementioned genera. The pH values of the soil samples from the Passos, Luminárias, and Arcos regions varied from 4.1 to 5.5. There were no significant differences in the concentrations of phosphorus, magnesium, and organic matter in the soils among the studied areas. Samples from the Arcos area contained large amounts of aluminium in the rainy season and both hydrogen and aluminium in the rainy and dry seasons. The Actinobacteria population seemed to be unaffected by the high levels of aluminium in the soil. Studies are being conducted to produce bioactive compounds from Actinobacteria fermentations on different substrates. The present data suggest that the number and diversity of Actinobacteria spp. in tropical soils represent a vast unexplored resource for the biotechnology of bioactives production.

  13. Adaptability of microbial inoculators and their contribution to degradation of mineral oil and PAHs

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Five dominant bacteria strains(Acetobacter sp., Alcaligenes sp., Micrococcus sp., Arthrobacter sp. and Bacillus sp.) and five fungi strains (Cephalosporium sp. I, Cephalosporium sp. Ⅱ, Aspergillus sp. Ⅰ, Aspergillus sp. Ⅱ and Fusarium sp.) isolated from petroleum-contaminated soil were used to assess the potential capability of mineral oil and PAH enhanced degradation separately and jointly using the batch liquid medium cultivation with diesel oil spiked at 1000 mg/L. The experiment was performed on a reciprocal shaker in the darkness at 25℃ to 30℃ for 100 d. The dynamic variation in the activity of microbial inoculators in each treatment and the degradation of the target pollutants during the period of experiment were monitored. Results showed a more rapid biodegradation of mineral oil and PAHs at the beginning of the experiment (about 20 d) by dominant bacteria, fungi and their mixture than that of the indigenous microorganisms, however, thereafter an opposite trend was exhibited that the removal ratio by indigenous microorganisms was superior to any other dominant treatments and the tendency lasted till the end of the experiment, indicating the limited competitive capability of dominant microorganisms to degrade the contaminants, and the natural selection of indigenous microorganisms for use in the removal of the contaminants. At the end of the experiment, the removal ratio of mineral oil ranged from 56.8 % to 79.2 % and PAHs ranged from 96.8 % to 99.1% in each treatment by microbial inoculators.

  14. Phenanthrene and Pyrene Modify the Composition and Structure of the Cultivable Endophytic Bacterial Community in Ryegrass (Lolium multiflorum Lam

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    Xuezhu Zhu

    2016-11-01

    Full Text Available This study provides new insights into the dynamics of bacterial community structure during phytoremediation. The communities of cultivable autochthonous endophytic bacteria in ryegrass exposed to polycyclic aromatic hydrocarbons (PAHs were investigated with regard to their potential to biodegrade PAHs. Bacterial counts and 16S rRNA gene sequence were used in the microbiological evaluation. A total of 33 endophytic bacterial strains were isolated from ryegrass plants, which represented 15 different genera and eight different classes, respectively. Moreover, PAH contamination modified the composition and structure of the endophytic bacterial community in the plants. Bacillus sp., Pantoea sp., Pseudomonas sp., Arthrobacter sp., Pedobacter sp. and Delftia sp. were only isolated from the seedlings exposed to PAHs. Furthermore, the dominant genera in roots shifted from Enterobacter sp. to Serratia sp., Bacillus sp., Pantoea sp., and Stenotrophomonas sp., which could highly biodegrade phenanthrene (PHE. However, the diversity of endophytic bacterial community was decreased by exposure to the mixture of PAHs, and increased by respective exposure to PHE and pyrene (PYR, while the abundance was increased by PAH exposure. The results clearly indicated that the exposure of plants to PAHs would be beneficial for improving the effectiveness of phytoremediation of PAHs.

  15. Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea, Fujian, China

    Institute of Scientific and Technical Information of China (English)

    MASKAOUI Khalid; ZHENG Tianling; HONG Huasheng; YU Zhiming; YUAN Jianjun; HU Zhong

    2004-01-01

    In order to estimate the biodegradation of three polycyclic aromatic hydrocarbons (PAHs) compounds, bacterial strains were isolated from marine sediments in three heavily contaminated sites (Yuandang Lake, Dongdu Port and Aquacultural zones in Maluan Bay) in Xiamen Western Sea. The results show three bacterial strains, which used pyrene as the sole carbon source, were identified as strains of Aureobacterium sp., Arthrobacter sp., Rhodococcus sp. The PAH-degrading bacteria isolated had a strong ability to degrade phenanhrene, fluoranthene and pyrene at different degradation rates. The highest degradation rate was observed when three PAH compounds were mixed with an individual strain in the medium. The three PAHs were degraded after one week with a degradation rate of 89.94 % for phenanthrene and 93.4 % for both of fluoranthene and pyrene. In addition, after 25 days of incubation, the degradation rate was 99.98 % for phenanthrene and 99.97 % for both of fluoranthene and pyrene. Optical density was measured to estimate bacterial growth during the degradation of PAHs. Highest levels of bacterial growth were observed with a three PAH mixture in the culture, suggesting that the concentration of PAHs influenced bacterial growth and the highest levels of degradation for most series were detected after one week of incubation.

  16. Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea, Fujian, China

    Science.gov (United States)

    Khalid, Maskaoui; Zheng, Tianling; Hong, Huasheng; Yu, Zhiming; Yuan, Jianjun; Hu, Zhong

    2004-12-01

    In order to estimate the biodegradation of three polycyclic aromatic hydrocarbons (PAHs) compounds, bacterial strains were isolated from marine sediments in three heavily contaminated sites (Yuandang Lake, Dongdu Port and Aquacultural zones in Maluan Bay) in Xiamen Western Sea. The results show three bacterial strains, which used pyrene as the sole carbon source, were identified as strains of Aureobacterium sp., Arthrobacter sp., Rhodococcus sp. The PAH-degrading bacteria isolated had a strong ability to degrade phenanhrene, fluoranthene and pyrene at different degradation rates. The highest degradation rate was observed when three PAH compounds were mixed with an individual strain in the medium. The three PAHs were degraded after one week with a degradation rate of 89.94% for phenanthrene and 93.4% for both of fluoranthene and pyrene. In addition, after 25 days of incubation, the degradation rate was 99.98% for phenanthrene and 99.97% for both of fluoranthene and pyrene. Optical density was measured to estimate bacterial growth during the degradation of PAHs. Highest levels of bacterial growth were observed with a three PAH mixture in the culture, suggesting that the concentration of PAHs influenced bacterial growth and the highest levels of degradation for most series were detected after one week of incubation.

  17. Bioluminescent bioreporter sensing of foodborne toxins

    Science.gov (United States)

    Fraley, Amanda C.; Ripp, Steven; Sayler, Gary S.

    2004-06-01

    Histamine is the primary etiological agent in the foodborne disease scombrotoxicosis, one of the most common food toxicities related to fish consumption. Procedures for detecting histamine in fish products are available, but are often too expensive or too complex for routine use. As an alternative, a bacterial bioluminescent bioreporter has been constructed to develop a biosensor system that autonomously responds to low levels of histamine. The bioreporter contains a promoterless Photorhabdus luminescens lux operon (luxCDABE) fused with the Vibrio anguillarum angR regulatory gene promoter of the anguibactin biosynthetic operon. The bioreporter emitted 1.46 times more bioluminescence than background, 30 minutes after the addition of 100mM histamine. However, specificity was not optimal, as this biosensor generated significant bioluminescence in the presence of L-proline and L-histidine. As a means towards improving histamine specificity, the promoter region of a histamine oxidase gene from Arthrobacter globiformis was cloned upstream of the promotorless lux operon from Photorhabdus luminescens. This recently constructed whole-cell, lux-based bioluminescent bioreporter is currently being tested for optimal performance in the presence of histamine in order to provide a rapid, simple, and inexpensive model sensor for the detection of foodborne toxins.

  18. Natural Attenuation model and degrading bacterial community of 1,1,1-Trichloroethane contaminant in Shallow Groundwater in Shanghai

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    Qiang eLu

    2015-08-01

    Full Text Available Natural attenuation is an effective and feasible technology for controlling groundwater contamination. This study investigated the potential effectiveness and mechanisms of natural attenuation of 1,1,1-trichloroethane (TCA contaminants in in Shallow Groundwater in Shanghai by using a column simulation experiment, reactive transport model, and 16S rRNA gene clone library. The results indicated that the majority of the contaminant mass was present at 2-6 m in depth, the contaminated area was approximately 1000 m2, and natural attenuation processes were occurring at the site. The effluent breakthrough curves from the column experiments demonstrated that the effectiveness of TCA natural attenuation in the groundwater accorded with the advection-dispersion-reaction equation. The kinetic parameter of adsorption and biotic dehydrochlorination of TCA was 0.068 m3/kg and 0.0045 d-1. The contamination plume was predicted to diminish and the maximum concentration of TCA decreased to 280 μg/L. The bacterial community in situ groundwater belonged to Trichococcus, Geobacteraceae, Geobacter, Mucilaginibacter and Arthrobacter.

  19. Some Physico-Chemical and Bacteriological Characteristics of Soil Samples around Calabar Metropolis, Cross River State, Nigeria

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    Okorafor, K. A

    2016-08-01

    Full Text Available Physico-chemical and bacteriological parameters of soil samples around Calabar Metropolis, Cross River State, Nigeria were examined to determine the pollution status of the soil quality. Results of the physico-chemical analysis showed that the soil samples had pH range of 4.4 – 5.2. Tinapa soil has the highest value of Copper (39.63mg/kg and Nickel (11.36mg/kg and Anantigha has the highest value of Zinc (14.59mg/kg, Iron Fe (78.19mg/kg and Manganese (47.42mg/kg. The results revealed a high total count of 23.5x106 cfu/g in Anantigha and 24.5x10-3 cfu/g in Tinapa for bacteria and fungi respectively. Some bacteria isolates found during the study includes, Escherichia coli, Bacillus subtilus, Clostridium sp, Arthrobacter sp, Streptomyces sp, Nocardia sp, Pseudomonas sp and Micrococcus sp., and Fungal isolates includes, Actinomycete sp, Verticullium sp, Aspergillus sp, Mucor sp, Nigospora sp and Paecilomyces sp. From the result, soil sample from Anantigha have comparatively the highest Total Bacterial Counts compared to the other two locations. The health implications of this work is that Anantigha and Tinapa areas being low lying were likely, because of the presence of Escherichia coli, to experience gastro-intestinal diseases such as dysentery and cholera than the Ediba environments.

  20. Genetic diversity of culturable bacteria in oil-contaminated rhizosphere of Galega orientalis

    Energy Technology Data Exchange (ETDEWEB)

    Jussila, Minna M. [Department of Applied Chemistry and Microbiology, Viikki Biocenter, PO Box 56, FI-00014, University of Helsinki (Finland)]. E-mail: minna.m.jussila@helsinki.fi; Jurgens, German [Department of Applied Chemistry and Microbiology, Viikki Biocenter, PO Box 56, FI-00014, University of Helsinki (Finland); Lindstroem, Kristina [Department of Applied Chemistry and Microbiology, Viikki Biocenter, PO Box 56, FI-00014, University of Helsinki (Finland); Suominen, Leena [Department of Applied Chemistry and Microbiology, Viikki Biocenter, PO Box 56, FI-00014, University of Helsinki (Finland)

    2006-01-15

    A collection of 50 indigenous meta-toluate tolerating bacteria isolated from oil-contaminated rhizosphere of Galega orientalis on selective medium was characterized and identified by classical and molecular methods. 16S rDNA partial sequencing showed the presence of five major lineages of the Bacteria domain. Gram-positive Rhodococcus, Bacillus and Arthrobacter and gram-negative Pseudomonas were the most abundant genera. Only one-fifth of the strains that tolerated m-toluate also degraded m-toluate. The inoculum Pseudomonas putida PaW85 was not found in the rhizosphere samples. The ability to degrade m-toluate by the TOL plasmid was detected only in species of the genus Pseudomonas. However, a few Rhodococcus erythropolis strains were found which were able to degrade m-toluate. A new finding was that Pseudomonas migulae strains and a few P. oryzihabitans strains were able to grow on m-toluate and most likely contained the TOL plasmid. Because strain specific differences in degradation abilities were found for P. oryzihabitans, separation at the strain level was important. For strain specific separation (GTG){sub 5} fingerprinting was the best method. A combination of the single locus ribotyping and the whole genomic fingerprinting techniques with the selective partial sequencing formed a practical molecular toolbox for studying genetic diversity of culturable bacteria in oil-contaminated rhizosphere. - Bacterial diversity during rhizoremediation in oil-contaminated soil is characterized by a combination of molecular methods.

  1. Astaxanthin from psychrotrophic Sphingomonas faeni exhibits antagonism against food-spoilage bacteria at low temperatures.

    Science.gov (United States)

    Mageswari, Anbazhagan; Subramanian, Parthiban; Srinivasan, Ramachandran; Karthikeyan, Sivashanmugam; Gothandam, Kodiveri Muthukaliannan

    2015-10-01

    Food production and processing industry holds a perpetual relationship with microorganisms and their by-products. In the present study, we aimed to identify beneficial cold-adapted bacteria devoid of any food spoilage properties and study their antagonism against common food-borne pathogens at low temperature conditions. Ten isolates were obtained on selective isolation at 5 °C, which were spread across genera Pseudomonas, Sphingomonas, Psychrobacter, Leuconostoc, Rhodococcus, and Arthrobacter. Methanol extracts of strains were found to contain several bioactive metabolites. Among the studied isolates, methanol extracts of S. faeni ISY and Rhodococcus fascians CS4 were found to show antagonism against growth of Escherichia coli, Proteus mirabilis, Enterobacter aerogenes, Listeria monocytogenes and Vibrio fischeri at refrigeration temperatures. Characterization of the abundant yellow pigment in methanol extracts of S. faeni ISY through UV-Vis spectrophotometry, high performance liquid chromatography (HPLC) and mass spectrometry (LC-MS) revealed the presence of astaxanthin, which, owing to its presence in very large amounts and evidenced to be responsible for antagonistic activity of the solvent extract.

  2. Kinetics of zinc toxicity to environmental bacterial isolates

    Directory of Open Access Journals (Sweden)

    Christian Okechukwu Nweke

    2009-12-01

    Full Text Available Toxicity of zinc to Pseudomonas, Escherichia, Proteus, Bacillus and Arthrobacter species isolated from a tropical river and petroleum refinery effluent was assessed using TTC-dehydrogenase activity (DHA inhibition test. At sufficient concentrations, zinc is toxic to these bacterial cells, and the exposure of the cells to zinc ion resulted in repression of dehydrogenase activity. The patterns of these toxic effects can be mathematically described with logistic dose-response models and in a manner similar to the non-competitive inhibition of enzymes. The threshold concentration above which toxic effect is observed ranged from 0.008 mM for Pseudomonas sp. DAF1 to 0.364 mM for Proteus sp. PLK2. The coefficients of inhibition Ki correlated with the IC50 and indicate that zinc toxicity is dependent on the organism. The Ki and toxicity threshold values predicted from the equations are comparable and are suitable indicators for kinetic analyses of zinc toxicity against bacteria.

  3. Isolation, development and identification of salt-tolerant bacterial consortium from crude-oil-contaminated soil for degradation of di-azo dye Reactive Blue 220.

    Science.gov (United States)

    Patel, Vipul R; Bhatt, Nikhil

    2015-01-01

    The objective of this study was development and characterization of a halophilic bacterial consortium for rapid decolorization and degradation of a wide range of dyes and their mixtures. The 16S rRNA gene analysis of developed halophilic consortium VN.1 showed that the bacterial consortium contained six bacterial strains, which were identified as Pseudomonas fluorescens HM480360, Enterobacter aerogenes HM480361, Shewanella sp. HM589853, Arthrobacter nicotianae HM480363, Bacillus beijingensis HM480362 and Pseudomonas aeruginosa JQ659549. Halophilic consortium VN.1 was able to decolorize up to 2,500 mg/L RB220 with >85% chemical oxygen demand (COD) reduction under static condition at 30 °C and pH 8.0 in the presence of 7% NaCl. VN.1 also exhibited more than 85% COD reduction with >25 mg/(L h) rate of decolorization in the case of different reactive dye mixtures. We propose the symmetric cleavage of RB220 using Fourier transform infrared, high-performance liquid chromatography (HPLC), nuclear magnetic resonance and gas chromatography-mass spectrometry analysis, and confirmed the formation of sodium-4-aminobenzenesulfonate, sodium-6-aminonepthalenesulfonate, and sodiumbenzene/nepthalenesulfonate. Toxicity studies confirm that the biodegraded products of RB220 effluent stimulate the growth of plants as well as the bacterial community responsible for soil fertility.

  4. Nitric oxide production in celomocytes of the earthworm Eisenia hortensis following bacterial challenge

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    SR Cook

    2015-02-01

    Full Text Available In this in vitro investigation, nitric oxide (NO production was induced within celomocytes of the earthworm Eisenia hortensis following microbial challenge. Celomocytes were pre-loaded with the fluorescent indicator 4-amino-5-methylamino-2’, 7’-difluorofluorescein diacetate (DAF-FM DA in order to detect the presence of intracellular nitric oxide subsequent to a 16 h incubation with chemically-fixed soil bacteria including Bacillus megaterium, Arthrobacter globiformis, Pseudomonas stutzeri, and Azotobacter chroococcum at a range of multiplicities of infection (MOIs. Flow cytometric analysis measuring increases in relative fluorescence intensity (RFI, which is directly proportional to the amount of intracellular NO produced, permitted determination of statistical significance (p < 0.05 of exposed celomocytes compared to baseline controls. Significant increases in NO were detected reproducibly in celomocytes treated with all bacterial species used. The most prominent results were observed after exposure to Gram positive B. megaterium and A. globiformis where 100 % of earthworms tested exhibited statistically significant increases of RFI at MOIs of 100:1 and 500:1, respectively. Furthermore, significant decreases in NO production in bacteria-stimulated earthworm celomocytes incubated with the NOS inhibitor aminoguanidine hydrochloride were observed. These results demonstrate microbial induction of NO synthesis in earthworms and provide evidence of an antimicrobial role of NO in the innate immune system.

  5. Diversity, ecological distribution and biotechnological potential of Actinobacteria inhabiting seamounts and non-seamounts in the Tyrrhenian Sea

    KAUST Repository

    Ettoumi, Besma

    2016-04-01

    In the present study, the ecological distribution of marine Actinobacteria isolated from seamount and non-seamount stations in the Tyrrhenian Sea was investigated. A collection of 110 isolates was analyzed by Automated Ribosomal Intergenic Spacer Analysis (ARISA) and 16S rRNA gene sequencing of representatives for each ARISA haplotype (n = 49). Phylogenetic analysis of 16S rRNA sequences showed a wide diversity of marine isolates and clustered the strains into 11 different genera, Janibacter, Rhodococcus, Arthrobacter, Kocuria, Dietzia, Curtobacterium, Micrococcus, Citricoccus, Brevibacterium, Brachybacterium and Nocardioides. Interestingly, Janibacter limosus was the most encountered species particularly in seamounts stations, suggesting that it represents an endemic species of this particular ecosystem. The application of BOX-PCR fingerprinting on J. limosus sub-collection (n = 22), allowed their separation into seven distinct BOX-genotypes suggesting a high intraspecific microdiversity among the collection. Furthermore, by screening the biotechnological potential of selected actinobacterial strains, J. limosus was shown to exhibit the most important biosurfactant activity. Our overall data indicates that Janibacter is a major and active component of seamounts in the Tyrrhenian Sea adapted to low nutrient ecological niche.

  6. Phylogenetic diversity and biological activity of actinobacteria isolated from the Chukchi Shelf marine sediments in the Arctic Ocean.

    Science.gov (United States)

    Yuan, Meng; Yu, Yong; Li, Hui-Rong; Dong, Ning; Zhang, Xiao-Hua

    2014-03-06

    Marine environments are a rich source of Actinobacteria and have the potential to produce a wide variety of biologically active secondary metabolites. In this study, we used four selective isolation media to culture Actinobacteria from the sediments collected from the Chukchi Shelf in the Arctic Ocean. A total of 73 actinobacterial strains were isolated. Based on repetitive DNA fingerprinting analysis, we selected 30 representatives for partial characterization according to their phylogenetic diversity, antimicrobial activities and secondary-metabolite biosynthesis genes. Results from the 16S rRNA gene sequence analysis indicated that the 30 strains could be sorted into 18 phylotypes belonging to 14 different genera: Agrococcus, Arsenicicoccus, Arthrobacter, Brevibacterium, Citricoccus, Janibacter, Kocuria, Microbacterium, Microlunatus, Nocardioides, Nocardiopsis, Saccharopolyspora, Salinibacterium and Streptomyces. To our knowledge, this paper is the first report on the isolation of Microlunatus genus members from marine habitats. Of the 30 isolates, 11 strains exhibited antibacterial and/or antifungal activity, seven of which have activities against Bacillus subtilis and Candida albicans. All 30 strains have at least two biosynthetic genes, one-third of which possess more than four biosynthetic genes. This study demonstrates the significant diversity of Actinobacteria in the Chukchi Shelf sediment and their potential for producing biologically active compounds and novel material for genetic manipulation or combinatorial biosynthesis.

  7. Removal and Recovery of Uranium using Microorganisms Isolated from North American Uranium Deposits

    Directory of Open Access Journals (Sweden)

    Takehiko Tsuruta

    2007-01-01

    Full Text Available Some attempts were made to remove and recover uranium that may be present in nuclear fuel effluents and mine tailings using microorganisms isolated from North American uranium deposits. To establish which microorganisms accumulate the most uranium, hundreds strains of microorganisms were screened. Of these strains of microorganisms tested, extremely high uranium accumulating ability was found in some bacteria isolated from North American uranium deposits. These bacterial strains, such as Arthrobacter and Bacillus sp., can accumulate about 2500 µmol uranium per gram dry wt. of microbial cells within one hour. These microbial cells can remove uranium from the uranium refining waste water with high efficiency. These microbial cells can also accumulate thorium as well as uranium with high efficiency. The microbial cells immobilized with polyacrylamide gel have excellent handling characteristics and can be used repeatedly in the adsorption-desorption cycles. These new microorganisms isolated from uranium deposits can be used as an adsorbing agent for the removal of the nuclear fuel elements, which may be present in nuclear fuel effluents, mine tailings and other waste sources.

  8. Physiological and biochemical characterization of a novel nicotine-degrading bacterium Pseudomonas geniculata N1.

    Directory of Open Access Journals (Sweden)

    Yanghui Liu

    Full Text Available Management of solid wastes with high nicotine content, such as those accumulated during tobacco manufacturing, poses a major challenge, which can be addressed by using bacteria such as Pseudomonas and Arthrobacter. In this study, a new species of Pseudomonas geniculata, namely strain N1, which is capable of efficiently degrading nicotine, was isolated and identified. The optimal growth conditions for strain N1 are a temperature of 30°C, and a pH 6.5, at a rotation rate of 120 rpm min(-1 with 1 g l(-1 nicotine as the sole source of carbon and nitrogen. Myosmine, cotinine, 6-hydroxynicotine, 6-hydroxy-N-methylmyosmine, and 6-hydroxy-pseudooxynicotine were detected as the five intermediates through gas chromatography-mass and liquid chromatography-mass analyses. The identified metabolites were different from those generated by Pseudomonas putida strains. The analysis also highlighted the bacterial metabolic diversity in relation to nicotine degradation by different Pseudomonas strains.

  9. Biodegradation of high concentrations of mixed polycyclic aromatic hydrocarbons by indigenous bacteria from a river sediment: a microcosm study and bacterial community analysis.

    Science.gov (United States)

    Muangchinda, Chanokporn; Yamazoe, Atsushi; Polrit, Duangporn; Thoetkiattikul, Honglada; Mhuantong, Wuttichai; Champreda, Verawat; Pinyakong, Onruthai

    2017-02-01

    This study assessed the biodegradation of mixtures of polycyclic aromatic hydrocarbons (PAHs) by indigenous bacteria in river sediment. Microcosms were constructed from sediment from the Chao Phraya River (the main river in Thailand) by supplementation with high concentrations of fluorene, phenanthrene, pyrene (300 mg kg(-1) of each PAH), and acenaphthene (600 mg kg(-1)). Fluorene and phenanthrene were completely degraded, whereas 50% of the pyrene and acenaphthene were removed at the end of the incubation period (70 days). Community analyses revealed the dynamics of the bacterial profiles in the PAH-degrading microcosms after PAH exposure. Actinobacteria predominated and became significantly more abundant in the microcosms after 14 days of incubation at room temperature under aerobic conditions. Furthermore, the remaining PAHs and alpha diversity were positively correlated. The sequencing of clone libraries of the PAH-RHDα genes also revealed that the dioxygenase genes of Mycobacterium sp. comprised 100% of the PAH-RHDα library at the end of the microcosm setup. Moreover, two PAH-degrading Actinobacteria (Arthrobacter sp. and Rhodococcus ruber) were isolated from the original sediment sample and showed high activity in the degradation of phenanthrene and fluorene in liquid cultivation. This study reveals that indigenous bacteria had the ability to degrade high concentrations of mixed PAHs and provide clear evidence that Actinobacteria may be potential candidates to play a major role in PAH degradation in the river sediment.

  10. Screening of bacterial strains isolated from uranium mill tailings porewaters for bioremediation purposes.

    Science.gov (United States)

    Sánchez-Castro, Iván; Amador-García, Ahinara; Moreno-Romero, Cristina; López-Fernández, Margarita; Phrommavanh, Vannapha; Nos, Jeremy; Descostes, Michael; Merroun, Mohamed L

    2017-01-01

    The present work characterizes at different levels a number of bacterial strains isolated from porewaters sampled in the vicinity of two French uranium tailing repositories. The 16S rRNA gene from 33 bacterial isolates, corresponding to the different morphotypes recovered, was almost fully sequenced. The resulting sequences belonged to 13 bacterial genera comprised in the phyla Firmicutes, Actinobacteria and Proteobacteria. Further characterization at physiological level and metals/metalloid tolerance provided evidences for an appropriate selection of bacterial strains potentially useful for immobilization of uranium and other common contaminants. By using High Resolution Transmission Electron Microscope (HRTEM), this potential ability to immobilize uranium as U phosphate mineral phases was confirmed for the bacterial strains Br3 and Br5 corresponding to Arthrobacter sp. and Microbacterium oxydans, respectively. Scanning Transmission Electron Microscope- High-Angle Annular Dark-Field (STEM-HAADF) analysis showed U accumulates on the surface and within bacterial cytoplasm, in addition to the extracellular space. Energy Dispersive X-ray (EDX) element-distribution maps demonstrated the presence of U and P within these accumulates. These results indicate the potential of certain bacterial strains isolated from porewaters of U mill tailings for immobilizing uranium, likely as uranium phosphates. Some of these bacterial isolates might be considered as promising candidates in the design of uranium bioremediation strategies.

  11. Comparative mechanisms of protein transduction mediated by cell-penetrating peptides in prokaryotes.

    Science.gov (United States)

    Liu, Betty Revon; Huang, Yue-Wern; Aronstam, Robert S; Lee, Han-Jung

    2015-04-01

    Bacterial and archaeal cell envelopes are complex multilayered barriers that serve to protect these microorganisms from their extremely harsh and often hostile environments. Import of exogenous proteins and nanoparticles into cells is important for biotechnological applications in prokaryotes. In this report, we demonstrate that cell-penetrating peptides (CPPs), both bacteria-expressed nona-arginine peptide (R9) and synthetic R9 (SR9), are able to deliver noncovalently associated proteins or quantum dots into four representative species of prokaryotes: cyanobacteria (Synechocystis sp. PCC 6803), bacteria (Escherichia coli DH5α and Arthrobacter ilicis D-50), and archaea (Thermus aquaticus). Although energy-dependent endocytosis is generally accepted as a hallmark that distinguishes eukaryotes from prokaryotes, cellular uptake of uncomplexed green fluorescent protein (GFP) by cyanobacteria was mediated by classical endocytosis. Mechanistic studies revealed that macropinocytosis plays a critical and major role in CPP-mediated protein transduction in all four prokaryotes. Membrane damage was not observed when cyanobacterial cells were treated with R9/GFP complexes, nor was cytotoxicity detected when bacteria or archaea were treated with SR9/QD complexes in the presence of macropinocytic inhibitors. These results indicate that the uptake of protein is not due to a compromise of membrane integrity in cyanobacteria, and that CPP can be an effective and safe carrier for membrane trafficking in prokaryotic cells. Our investigation provides important new insights into the transport of exogenous proteins and nanoparticles across the complex membrane systems of prokaryotes.

  12. Biodegradation of phenanthrene and pyrene in compost-amended soil.

    Science.gov (United States)

    Yuan, Shaw Y; Su, Lai M; Chang, Bea V

    2009-06-01

    This study investigated the biodegradation of the polycyclic aromatic hydrocarbons (PAHs) phenanthrene and pyrene in compost and compost-amended soil. The degradation rates of the two PAHs were phenanthrene>pyrene. The degradation of PAH was enhanced when the two PAHs were present simultaneously in the soil. The addition of either of the two types of compost (straw and animal manure) individually enhanced PAH degradation. Compost samples were separated into fractions with various particle size ranges, which spanned 2-50 microm, 50-105 microm, 105-500 microm, and 500-2000 microm. We observed that the compost fractions with smaller particle sizes demonstrated higher PAH degradation rates. However, when the different compost fractions were added to soil, compost particle size had no significant effect on the rate of PAH degradation. Of the micro-organisms isolated from the soil-compost mixtures, strains S1, S2, and S8, which were identified as Arthrobacter nicotianae, Pseudomonas fluorescens, and Bordetella Petrii, respectively, demonstrated the best degradation ability.

  13. Diverse bacteria with lignin degrading potentials isolated from two ranks of coal

    Directory of Open Access Journals (Sweden)

    Lu Wang

    2016-09-01

    Full Text Available Taking natural coal as a seed bank of bacterial strains able to degrade lignin that is with molecular structure similar to coal components, we isolated 393 and 483 bacterial strains from a meager lean coal sample from Hancheng coalbed and a brown coal sample from Bayannaoer coalbed, respectively by using different media. Statistical analysis showed that isolates were significantly more site-specific than medium-specific. Of the 876 strains belonging to 27 genera in Actinobacteria, Firmicutes, and Proteobacteria, 612 were positive for lignin degradation function, including 218 strains belonging to 35 species in Hancheng and 394 strains belonging to 19 species in Zhongqi. Among them, the dominant lignin-degrading strains were Thauera (Hancheng, Arthrobacter (Zhongqi and Rhizobium (both. The genes encoding the laccases- or laccase-like multicopper oxidases, key enzymes in lignin production and degradation, were detected in three genera including Massilia for the first time, which was in high expression by real time PCR (qRT-PCR detection, confirming coal as a good seed bank.

  14. Diversity of pigmented Gram-positive bacteria associated with marine macroalgae from Antarctica.

    Science.gov (United States)

    Leiva, Sergio; Alvarado, Pamela; Huang, Ying; Wang, Jian; Garrido, Ignacio

    2015-12-01

    Little is known about the diversity and roles of Gram-positive and pigmented bacteria in Antarctic environments, especially those associated with marine macroorganisms. This work is the first study about the diversity and antimicrobial activity of culturable pigmented Gram-positive bacteria associated with marine Antarctic macroalgae. A total of 31 pigmented Gram-positive strains were isolated from the surface of six species of macroalgae collected in the King George Island, South Shetland Islands. On the basis of 16S rRNA gene sequence similarities ≥99%, 18 phylotypes were defined, which were clustered into 11 genera of Actinobacteria (Agrococcus, Arthrobacter, Brachybacterium, Citricoccus, Kocuria, Labedella, Microbacterium, Micrococcus, Rhodococcus, Salinibacterium and Sanguibacter) and one genus of the Firmicutes (Staphylococcus). It was found that five isolates displayed antimicrobial activity against a set of macroalgae-associated bacteria. The active isolates were phylogenetically related to Agrococcus baldri, Brachybacterium rhamnosum, Citricoccus zhacaiensis and Kocuria palustris. The results indicate that a diverse community of pigmented Gram-positive bacteria is associated with Antartic macroalgae and suggest its potential as a promising source of antimicrobial and pigmented natural compounds.

  15. AepA of Pectobacterium is not involved in the regulation of extracellular plant cell wall degrading enzymes production.

    Science.gov (United States)

    Kõiv, Viia; Andresen, Liis; Mäe, Andres

    2010-06-01

    Plant cell wall degrading enzymes (PCWDE) are the major virulence determinants in phytopathogenic Pectobacterium, and their production is controlled by many regulatory factors. In this study, we focus on the role of the AepA protein, which was previously described to be a global regulator of PCWDE production in Pectobacterium carotovorum (Murata et al. in Mol Plant Microbe Interact 4:239-246, 1991). Our results show that neither inactivation nor overexpression of aepA affects PCWDE production in either Pectobacterium atrosepticum SCRI1043 or Pectobacterium carotovorum subsp. carotovorum SCC3193. The previously published observation based on the overexpression of aepA could be explained by the presence of the adjacent regulatory rsmB gene in the constructs used. Our database searches indicated that AepA belongs to the YtcJ subfamily of amidohydrolases. YtcJ-like amidohydrolases are present in bacteria, archaea, plants and some fungi. Although AepA has 28% identity with the formamide deformylase NfdA in Arthrobacter pascens F164, AepA was unable to catalyze the degradation of NdfA-specific N-substituted formamides. We conclude that AepA is a putative aminohydrolase not involved in regulation of PCWDE production.

  16. Switching the Regioselectivity of a Cyclohexanone Monooxygenase toward (+)-trans-Dihydrocarvone by Rational Protein Design.

    Science.gov (United States)

    Balke, Kathleen; Schmidt, Sandy; Genz, Maika; Bornscheuer, Uwe T

    2016-01-15

    The regioselectivity of the Baeyer-Villiger monooxygenase-catalyzed oxidation is governed mostly by electronic effects leading to the migration of the higher substituted residue. However, in some cases, substrate binding occurs in a way that the less substituted residue lies in an antiperiplanar orientation to the peroxy bond in the Criegee intermediate yielding in the formation of the "abnormal" lactone product. We are the first to demonstrate a complete switch in the regioselectivity of the BVMO from Arthrobacter sp. (CHMOArthro) as exemplified for (+)-trans-dihydrocarvone by redesigning the active site of the enzyme. In the designed triple mutant, the substrate binds in an inverted orientation leading to a ratio of 99:1 in favor of the normal lactone instead of exclusive formation of the abnormal lactone in case of the wild type enzyme. In order to validate our computational study, the beneficial mutations were successfully transferred to the CHMO from Acinetobacter sp. (CHMOAcineto), again yielding in a complete switch of regioselectivity.

  17. [Screening and function analysis of a cyclohexanone-degrading bacterium CN1 from deep sea sediment].

    Science.gov (United States)

    Li, Hu; Shao, Zong-Ze

    2007-10-01

    Micrococcu luteus CN1 was found to be able to utilize cyclohexanone well from the strains originally isolated from Pacific Ocean sediment. The optimum conditions for its growth were determined as 25 degrees C -37 degrees C, pH 8, salinity 6%. It could survive in the medium with high concentration of cyclohexanone ( > 44% V/V), and grew most vigorously in medium with 16.7% (V/V) cyclohexanone. CN1 could transform cyclohexanol to cyclohexanone which could be further degraded and mineralized quickly. This indicated the presence of cyclohexanol dehydrogenase and probable presence of cyclohexanone monooxygenase. With degenerate PCR for cloning part of cyclohexanone monooxygenase gene, the DNA fragment of 450bp was gotten. Amino acid sequence analysis showed that it owned the conserved sequence of the Baeyer-Villiger monooxygenase family and had the highest homology of 80% with cyclohexanone monooxygenase from Arthrobacter sp. BP2, only 53% with that from Acinetobacter sp. NCIMB 9871 which had been the most deeply investigated. So far as we know, both cyclohexanol and cyclohexanone degradation resorted to cyclohexanone monooxygenase. So this gene should be responsible for cyclohexanone degradation in CN1. All the cyclohexanone-degraders previously reported could degrade cyclopentanone, but, CN1 did not degrade cyclopentanone. This indicated that cyclohexanone monooxygenase in CN1 was special. Additionally, it was found for the first time that cyclohexanol could inhibit cyclohexanone degradation to certain degree in CN1.

  18. Characterization of the prokaryotic diversity through a stratigraphic permafrost core profile from the Qinghai-Tibet Plateau.

    Science.gov (United States)

    Hu, Weigang; Zhang, Qi; Tian, Tian; Li, Dingyao; Cheng, Gang; Mu, Jing; Wu, Qingbai; Niu, Fujun; An, Lizhe; Feng, Huyuan

    2016-05-01

    Permafrost on the Qinghai-Tibet Plateau is one of the most sensitive regions to climate warming, thus characterizing its microbial diversity and community composition may be important for understanding their potential responses to climate changes. Here, we investigated the prokaryotic diversity in a 10-m-long permafrost core from the Qinghai-Tibet Plateau by restriction fragment length polymorphism analysis targeting the 16S rRNA gene. We detected 191 and 17 bacterial and archaeal phylotypes representing 14 and 2 distinct phyla, respectively. Proteobacteria was the dominant bacterial phylum, while archaeal communities were characterized by a preponderance of Thaumarchaeota. Some of prokaryotic phylotypes were closely related to characterized species involved in carbon and nitrogen cycles, including nitrogen fixation, methane oxidation and nitrification. However, the majority of the phylotypes were only distantly related to known taxa at order or species level, suggesting the potential of novel diversity. Additionally, both bacterial α diversity and community composition changed significantly with sampling depth, where these communities mainly distributed according to core horizons. Arthrobacter-related phylotypes presented at high relative abundance in two active layer soils, while the deeper permafrost soils were dominated by Psychrobacter-related clones. Changes in bacterial community composition were correlated with most measured soil variables, such as carbon and nitrogen contents, pH, and conductivity.

  19. BIORREMEDIACIÓN DE UN SUELO CON DIESEL MEDIANTE EL USO DE MICROORGANISMOS AUTÓCTONOS

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    ARRIETA RAMÍREZ OLGA MARIA

    2012-07-01

    Full Text Available En este estudio, se aisló y caracterizó bioquímica y molecularmente un consorcio bacteriano capaz de degradar los diferentes hidrocarburos presentes en un combustible diesel,conformado por los siguientes géneros: Enterobacter sp, Bacillus sp, Staphylococcus aureus, Sanguibacter soli, Arthrobacter sp y Flavobacterium sp, a partir de un suelo contaminado con diesel a escala de laboratorio, y tratado mediante 2 tecnologías de biorremediación: atenuación natural y bioestimulación. Se definió como parámetro de control la concentración de Hidrocarburos Totales del Petróleo (HTP y para el cual, se obtuvo una reducción en la concentración en un periodo de 4 meses de 36,86% para atenuación natural y 50,99% para bioestimulación. La medición de la eficiencia de remoción de hidrocarburos se cuantificó por cromatografía de gases acoplada a masas (GC-MS.

  20. [The solubilization of four insoluble phosphates by some microorganisms].

    Science.gov (United States)

    Zhao, Xiaorong; Lin, Qimei; Li, Baoguo

    2002-04-01

    Four insoluble phosphates of ferric phosphate (Fe-P), aluminum phosphate (Al-P), fluorapatite (FAP) and rock phosphate (RP) were used as a sole phosphorus resource for some phosphate-solubilizing microorganisms. It was found that there was significant difference in solubilizing these phosphates by the tested isolates. The fungi normally were more powerful than the bacteria in dissolving the phsophates. The microorganisms generally solubilized more phosphate when supplied with NO3- than with NH4+. However, the isolates of 2TCiF2 and 4TCiF6 had much higher capacity to solubilize FAP and Al-P respectively in NH4+ medium. Most of the isolates solubilized readily FAP and RP, and then Al-P. Ferric phosphate was the least soluble to these isolates. Only isolate 2TCiF2 showed strong ability to solubilize Fe-P. In particular, two Aspergillus sp. had much higher capacity of dissolving Fe-P when suppled with NO3-. The isolates of Evwinia sp. 4TCRi22 and Enterobacter sp. 1TCRi15 had higher capacity of solubilizing FAP. But two Arthrobacter sp. showed the highest activity in RP medium. It is supposed that complexion of organic acids with metals may be the main reason for these isolates to solubilize the phosphates. However, other chelant substances may be much more important for Enterobacter sp. and Erwinia sp. to release phosphorus from the phsphates.

  1. Gas phase bio-filter for the removal of triethylamine (TEA) from air: microbial diversity analysis with reference to design parameters.

    Science.gov (United States)

    Gandu, Bharath; Sandhya, K; Gangagni Rao, A; Swamy, Y V

    2013-07-01

    Biotic (packed bio-filter; PBF) and abiotic (packed filter; PF) studies were carried out on two similar 2L gas phase filters for the removal of triethylamine (TEA) at inlet concentration in the range of 250-280 ppmV. Removal efficiency (RE) of PBF remained in the range of 90-99% during the stable period of operation (170 days) whereas RE of PF dropped gradually to 10% in a span of 90 days. Five different bacterial species viz; Aeromonas sp., Alcaligenes sp., Arthrobacter sp., Klebsiella sp., and Pseudomonas sp., were identified in PBF. It was observed that diethyl amine, ethylamine and nitrate were formed as metabolites during the degradation pathway. Empty bed residence time of 20s, mass loading rate of 202.26 g/m(3)/h, space velocity of 178.82 m(3)/m(3)/h and elimination capacity of 201.52 g/m(3)/h were found to be optimum design parameters for PBF to get RE in the range of 90-99%.

  2. Microbial community in high arsenic shallow groundwater aquifers in Hetao Basin of Inner Mongolia, China.

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    Ping Li

    Full Text Available A survey was carried out on the microbial community of 20 groundwater samples (4 low and 16 high arsenic groundwater and 19 sediments from three boreholes (two high arsenic and one low arsenic boreholes in a high arsenic groundwater system located in Hetao Basin, Inner Mongolia, using the 454 pyrosequencing approach. A total of 233,704 sequence reads were obtained and classified into 12-267 operational taxonomic units (OTUs. Groundwater and sediment samples were divided into low and high arsenic groups based on measured geochemical parameters and microbial communities, by hierarchical clustering and principal coordinates analysis. Richness and diversity of the microbial communities in high arsenic sediments are higher than those in high arsenic groundwater. Microbial community structure was significantly different either between low and high arsenic samples or between groundwater and sediments. Acinetobacter, Pseudomonas, Psychrobacter and Alishewanella were the top four genera in high arsenic groundwater, while Thiobacillus, Pseudomonas, Hydrogenophaga, Enterobacteriaceae, Sulfuricurvum and Arthrobacter dominated high arsenic sediments. Archaeal sequences in high arsenic groundwater were mostly related to methanogens. Biota-environment matching and co-inertia analyses showed that arsenic, total organic carbon, SO4(2-, SO4(2-/total sulfur ratio, and Fe(2+ were important environmental factors shaping the observed microbial communities. The results of this study expand our current understanding of microbial ecology in high arsenic groundwater aquifers and emphasize the potential importance of microbes in arsenic transformation in the Hetao Basin, Inner Mongolia.

  3. Diversity and biosynthetic potential of culturable aerobic heterotrophic bacteria isolated from Magura Cave, Bulgaria

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    Tomova Iva

    2013-01-01

    Full Text Available Biocapacity of bacteria inhabiting karstic caves to produce valuable biologically active compounds is still slightly investigated. A total of 46 culturable heterotrophic bacteria were isolated under aerobic conditions from the Gallery with pre-historical drawings in Magura Cave, Bulgaria. Phylogenetic analysis revealed that most of bacterial isolates aff iliated with Proteobacteria (63%, followed by Actinobacteria (10.9%, Bacteroidetes (10.9%, and Firmicutes (6.5%. A strong domination of Gram-negative bacteria (total 81% belonging to nine genera: Serratia, Pseudomonas, Enterobacter, Sphingobacterium, Stenotrophomonas, Commamonas, Acinetobacter, Obesumbacterium, and Myroides, was observed. Gram-positive isolates were represented by the genera Bacillus, Arthrobacter, and Micrococcus. One isolate showed a signif icant phylogenetic distance to the closest neighbor and could represent а novel species. Heterotrophic bacterial isolates from Magura Cave were investigated for hydrolytic enzymes production, antimicrobial and hemolytic activity. Predominance of producers of protease (87%, followed by xanthan lyase (64%, lipase (40%, β-glycosidase (40%, and phytase (21% was observed. Over 75% of the isolates demonstrated antimicrobial and hemolytic activity. The results suggest that heterotrophic bacteria isolated from Magura Cave could be a valuable source of industrially relevant psychrotolerant enzymes and bioactive metabolites. This study is a f irst report on the taxonomic composition and biological activity of culturable bacteria inhabiting a cave in Bulgaria.

  4. Bioremediation of Atmospheric Hydrocarbons via Bacteria Naturally Associated with Leaves of Higher Plants.

    Science.gov (United States)

    Ali, N; Al-Awadhi, H; Dashti, N; Khanafer, M; El-Nemr, I; Sorkhoh, N; Radwan, S S

    2015-01-01

    Bacteria associated with leaves of sixteen cultivated and wild plant species from all over Kuwait were analyzed by a culture-independent approach. This technique depended on partial sequencing of 16S rDNA regions in total genomic DNA from the bacterial consortia and comparing the resulting sequences with those in the GenBank database. To release bacterial cells from leaves, tough methods such as sonication co-released too much leaf chloroplasts whose DNA interfered with the bacterial DNA. A more satisfactory bacterial release with a minimum of chloroplast co-release was done by gently rubbing the leaf surfaces with soft tooth brushes in phosphate buffer. The leaves of all plant species harbored on their surfaces bacterial communities predominated by hydrocarbonoclastic (hydrocarbon-utilizing) bacterial genera. Leaves of 6 representative plants brought about in the laboratory effective removal of volatile hydrocarbons in sealed microcosms. Each individual plant species had a unique bacterial community structure. Collectively, the phyllospheric microflora on the studied plants comprised the genera Flavobacterium, Halomonas, Arthrobacter, Marinobacter, Neisseria, Ralstonia, Ochrobactrum. Exiguobacterium, Planomicrobium, Propionibacterium, Kocuria, Rhodococcus and Stenotrophomonas. This community structure was dramatically different from the structure we determined earlier for the same plants using the culture-dependent approach, although in both cases, hydrocarbonoclastic bacteria were frequent.

  5. Characterization of 15 selected coccal bacteria isolated from Antarctic rock and soil samples from the McMurdo-Dry Valleys (South-Victoria Land)

    Science.gov (United States)

    Siebert, J.; Hirsch, P.; Friedmann, E. I. (Principal Investigator)

    1988-01-01

    Approximately 1500 cultures of microorganisms were isolated from rocks and soils of the Ross Desert (McMurdo-Dry Valleys). From these, 15 coccoid strains were chosen for more detailed investigation. They were characterized by morphological, physiological and chemotaxonomical properties. All isolates were Gram-positive, catalase-positive and nonmotile. Six strains showed red pigmentation and could be identified as members of the genera Micrococcus (M. roseus, M. agilis) or Deinococcus. In spite of their coccoid morphology, the remaining nine strains had to be associated with coryneform bacteria (Arthrobacter, Brevibacterium), because of their cell wall composition and G+C ratios. Most of the strains were psychrotrophic, but one strain was even obligately psychrophilic, with a temperature maximum below 20 degrees C. Red cocci had in vitro pH optima above 9.0 although they generally originated from acid samples. Most isolates showed a preference for sugar alcohols and organic acids, compounds which are commonly known to be released by lichens, molds and algae, the other components of the cryptoendolithic ecosystem. These properties indicate that our strains are autochthonous members of the natural Antarctic microbial population.

  6. Crude oil treatment leads to shift of bacterial communities in soils from the deep active layer and upper permafrost along the China-Russia Crude Oil Pipeline route.

    Science.gov (United States)

    Yang, Sizhong; Wen, Xi; Zhao, Liang; Shi, Yulan; Jin, Huijun

    2014-01-01

    The buried China-Russia Crude Oil Pipeline (CRCOP) across the permafrost-associated cold ecosystem in northeastern China carries a risk of contamination to the deep active layers and upper permafrost in case of accidental rupture of the embedded pipeline or migration of oil spills. As many soil microbes are capable of degrading petroleum, knowledge about the intrinsic degraders and the microbial dynamics in the deep subsurface could extend our understanding of the application of in-situ bioremediation. In this study, an experiment was conducted to investigate the bacterial communities in response to simulated contamination to deep soil samples by using 454 pyrosequencing amplicons. The result showed that bacterial diversity was reduced after 8-weeks contamination. A shift in bacterial community composition was apparent in crude oil-amended soils with Proteobacteria (esp. α-subdivision) being the dominant phylum, together with Actinobacteria and Firmicutes. The contamination led to enrichment of indigenous bacterial taxa like Novosphingobium, Sphingobium, Caulobacter, Phenylobacterium, Alicylobacillus and Arthrobacter, which are generally capable of degrading polycyclic aromatic hydrocarbons (PAHs). The community shift highlighted the resilience of PAH degraders and their potential for in-situ degradation of crude oil under favorable conditions in the deep soils.

  7. Isolation and characterization of facultative mixotrophic ammonia-oxidizing bacteria from constructed wetlands

    Institute of Scientific and Technical Information of China (English)

    Soulwène Kouki; Neila Saidi; Fadhel M'hiri; Houda Nasr; Hanène Cherif; Hadda Ouzari; Abdermaceur Hassen

    2011-01-01

    Autotrophic ammonia-oxidizing bacteria (AOB) have been widely studied in constructed wetlands systems,while mixotrophic AOB have been less thoroughly examined.Heterotrophic bacteria were isolated from wastewater and rhizospheres of macrophytes of constructed wetlands,and then cultivated in a mixotrophic medium containing ammonium and acetic acid.A molecular characterization was accomplished using ITS-PCR amplification,and phylogenetic analysis based on 16S rRNA gene sequences.Results showed the presence of 35 bacteria,among 400 initially heterotrophic isolates,that were able to remove ammonia.These 35 isolates were classified into 10 genetically different groups based on ITS pattern.Then,a collection of 10 isolates were selected because of their relatively high ammonia removal efficiencies (ARE ≥ 80%) and their phylogenetic diversity.In conditions of mixotrophy,these strains were shown to be able to grow (increase of optical density OD660 during incubation with assimilation of nitrogen into cellular biomass) and to oxidize ammonia (important ammonia oxidation efficiencies,AOE between 79% and 87%).Among these facultative mixotrophic AOB,four isolates were genetically related to Firmicutes (Bacillus and Exiguobacterium),three isolates were affiliated to Actinobacteria (Arthrobacter) and three other isolates were associated with Proteobacteria (Pseudomonas,Ochrobactrum and Bordetella).

  8. 玉米内生联合固氮菌的分离与鉴定%Isolation and identification of associative nitrogen-fixing endophytic bacteria in maize

    Institute of Scientific and Technical Information of China (English)

    张多英; 张淑梅; 蔡柏岩

    2010-01-01

    试验对玉米内生固氮菌进行分离、鉴定,并研究内生细菌与玉米的联合固氮活性.结果表明,从玉米中分离出5株具有联合固氮活性的菌株,分别为1株弯曲假单胞菌NFR19(Pseudomonas geniculata),2株产酸克雷伯氏菌NFL28与NFSt18(Klebsiella oxytoca),1株节杆菌NFR7(Arthrobacter sp.),1株纤维化纤维菌NFR10(Cellulosimicrobium cellulans).研究首次分离出具有固氮活性的纤维化纤维菌,并证实节杆菌具有固氮活性.从环境中筛选新的玉米内生固氮菌资源,促进玉米生长,为玉米内生联合固氮细菌的应用奠定基础.

  9. Diversity of cultivable bacteria involved in the formation of macroscopic microbial colonies (Cave silver on the walls of a cave in Slovenia

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    Blagajana Herzog Velikonja

    2014-01-01

    Full Text Available Karstic caves often support white, yellow, grey or pink microbial colonies that are termed ‘cave silver’ by speleologists. Using various sample pre-treatments and culture media, a wide variety of bacteria associated with these colonies were recovered from a cave in Slovenia, Pajsarjeva jama. Decreasing the inoculum size resulted in significant increases in viable counts, while pre-treatments had the opposite effect with the exception of microwave irradiation. While all growth media yielded viable counts, the maximal counts were observed on a low-nutrient TWA medium. Based on the 16S rRNA gene sequence of OTU representatives, the majority of the 80 isolates examined belonged to Streptomyces (25%, Micrococcus (16% and Rhodococcus (10% Other abundant groups were Pseudomonas (9%, Agrobacterium (8%, Lysobacter (6% and Paenibacillus (5%, while members of genera Microbacterium, Agrococcus, Arthrobacter, Bacillus, Kocuria, Oerskovia, Sphingomonas, Aerococcus, and Bosea represented a minor portion of cultivable diversity encountered. Members of Streptomyces and Agrobacterium were common to all samples. Although these microorganisms readily form colonies under laboratory conditions, they were unrelated to abundant environmental phylotypes recovered from same samples in a previous study. However, the comparative 16S rRNA analysis showed that microorganisms highly related to the ones obtained in this study were cultivated from other subterranean environments indicating that they might represent true microbial cave dwellers.

  10. Monitoring bioremediation of atrazine in soil microcosms using molecular tools.

    Science.gov (United States)

    Sagarkar, Sneha; Mukherjee, Shinjini; Nousiainen, Aura; Björklöf, Katarina; Purohit, Hemant J; Jørgensen, Kirsten S; Kapley, Atya

    2013-01-01

    Molecular tools in microbial community analysis give access to information on catabolic potential and diversity of microbes. Applied in bioremediation, they could provide a new dimension to improve pollution control. This concept has been demonstrated in the study using atrazine as model pollutant. Bioremediation of the herbicide, atrazine, was analyzed in microcosm studies by bioaugmentation, biostimulation and natural attenuation. Genes from the atrazine degrading pathway atzA/B/C/D/E/F, trzN, and trzD were monitored during the course of treatment and results demonstrated variation in atzC, trzD and trzN genes with time. Change in copy number of trzN gene under different treatment processes was demonstrated by real-time PCR. The amplified trzN gene was cloned and sequence data showed homology to genes reported in Arthrobacter and Nocardioides. Results demonstrate that specific target genes can be monitored, quantified and correlated to degradation analysis which would help in predicting the outcome of any bioremediation strategy.

  11. A simple strategy for investigating the diversity and hydrocarbon degradation abilities of cultivable bacteria from contaminated soil.

    Science.gov (United States)

    Bučková, Maria; Puškarová, Andrea; Chovanová, Katarína; Kraková, Lucia; Ferianc, Peter; Pangallo, Domenico

    2013-06-01

    The use of indigenous bacterial strains is a valuable bioremediation strategy for cleaning the environment from hydrocarbon pollutants. The isolation and selection of hydrocarbon-degrading bacteria is therefore crucial for obtaining the most promising strains for site decontamination. Two different media, a minimal medium supplemented with a mixture of polycyclic aromatic hydrocarbons and a MS medium supplemented with triphenyltetrazolium chloride, were used for the isolation of bacterial strains from two hydrocarbon contaminated soils and from their enrichment phases. The hydrocarbon degradation abilities of these bacterial isolates were easily and rapidly assessed using the 2,6-dichlorophenol indophenol assay. The diversity of the bacterial communities isolated from these two soil samples and from their enrichment phases was evaluated by the combination of a bacterial clustering method, fluorescence ITS-PCR, and bacterial identification by 16S rRNA sequencing. Different PCR-based assays were performed in order to detect the genes responsible for hydrocarbon degradation. The best hydrocarbon-degrading bacteria, including Arthrobacter sp., Enterobacter sp., Sphingomonas sp., Pseudomonas koreensis, Pseudomonas putida and Pseudomonas plecoglossicida, were isolated directly from the soil samples on minimal medium. The nahAc gene was detected only in 13 Gram-negative isolates and the sequences of nahAc-like genes were obtained from Enterobacter, Stenotrophomonas, Pseudomonas brenneri, Pseudomonas entomophila and P. koreensis strains. The combination of isolation on minimal medium with the 2,6-dichlorophenol indophenol assay was effective in selecting different hydrocarbon-degrading strains from 353 isolates.

  12. Specific features of bacterial communities in floodplain agrocenoses

    Science.gov (United States)

    Dobrovol'Skaya, T. G.; Leont'evskaya, E. A.; Sneg, A. A.; Balabko, P. N.

    2010-04-01

    The analysis of the taxonomic structure of the bacterial complexes in the alluvial soils of the Oka River valley allowed revealing the distinct differences in the spectrum of the bacterial dominants in the virgin and cultivated soils. Arthrobacter and pigment coryneform bacteria are shown to predominate in the virgin soil; bacilli and pseudomonades are common in the soil under vegetables. On cabbage leaves and carrot roots (both healthy and rotten), the spectrum of dominants is composed of two genera of enterobacteria: Pantoea and Erwinia. As a result of the plowing in of vegetables into the soil, enterobacteria accumulate; among them, phytopathogenic species are present. Within a year after this plowing in and the new yield, the enterobacteria practically disappeared, but myxobacteria and cytophages developed. Since these bacteria belong to the cellulose-destroying prokaryotes, the increase in their contents in the soil testified to their participation in the decomposition of the buried vegetable residues. Weeds are known to concentrate various bacterial forms in the phylloplane; they enter from different ecological niches: soil, water, meadow, and agricultural plants. Representatives of phytopathogenic bacteria as minor components were found on weeds.

  13. Biological potential of extraterrestrial materials. 2. Microbial and plant responses to nutrients in the Murchison carbonaceous meteorite

    Science.gov (United States)

    Mautner, M. N.; Conner, A. J.; Killham, K.; Deamer, D. W.

    1997-01-01

    Meteoritic materials are investigated as potential early planetary nutrients. Aqueous extracts of the Murchison C2 carbonaceous meteorite are utilized as a sole carbon source by microorganisms, as demonstrated by the genetically modified Pseudomonas fluorescence equipped with the lux gene. Nutrient effects are observed also with the soil microorganisms Nocardia asteroides and Arthrobacter pascens that reach populations up to 5 x 10(7) CFU/ml in meteorite extracts, similar to populations in terrestrial soil extracts. Plant tissue cultures of Asparagus officinalis and Solanum tuberosum (potato) exhibit enhanced pigmentation and some enhanced growth when meteorite extracts are added to partial nutrient media, but inhibited growth when added to full nutrient solution. The meteorite extracts lead to large increases in S, Ca, Mg, and Fe plant tissue contents as shown by X-ray fluorescence, while P, K, and Cl contents show mixed effects. In both microbiological and plant tissue experiments, the nutrient and inhibitory effects appear to be best balanced for growth at about 1:20 (extracted solid : H2O) ratios. The results suggest that solutions in cavities in meteorites can provide efficient concentrated biogenic and early nutrient environments, including high phosphate levels, which may be the limiting nutrient. The results also suggest that carbonaceous asteroid resources can sustain soil microbial activity and provide essential macronutrients for future space-based ecosystems.

  14. Removal of Cr(VI) from aqueous solutions by a bacterial biofilm supported on zeolite: optimisation of the operational conditions and Scale-Up of the bioreactor

    Energy Technology Data Exchange (ETDEWEB)

    Pazos, M. [IBB - Instituto de Biotecnologia e Bioengenharia, Centro de Engenharia Biologica, Universidade do Minho, Braga (Portugal); Departamento de Ingenieria Quimica, Universidade de Vigo, Vigo (Spain); Branco, M.; Tavares, T. [IBB - Instituto de Biotecnologia e Bioengenharia, Centro de Engenharia Biologica, Universidade do Minho, Braga (Portugal); Neves, I.C. [Departamento de Quimica, Centro de Quimica, Universidade do Minho, Braga (Portugal); Sanroman, M.A. [Departamento de Ingenieria Quimica, Universidade de Vigo, Vigo (Spain)

    2010-12-15

    The aim of this study was to investigate the feasibility of a bioreactor system and its scale-up to remove Cr(VI) from solution. The bioreactor is based on an innovative process that combines bioreduction of Cr(VI) to Cr(III) by the bacterium Arthrobacter viscosus and Cr(III) sorption by a specific zeolite. Batch studies were conducted in a laboratory-scale bioreactor, taking into account different operating conditions. Several variables, such as biomass concentration, pH and zeolite pre-treatment, were evaluated to increase removal efficiency. The obtained results suggest that the Cr removal efficiency is improved when the initial biomass concentration is approximately 5 g L{sup -1} and the pH in the system is maintained at an acidic level. Under the optimised conditions, approximately 100 % of the Cr(VI) was removed. The scale-up of the developed biofilm process operating under the optimised conditions was satisfactorily tested in a 150-L bioreactor. (Copyright copyright 2010 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  15. Contenido microbiológico cultivable del tracto intestinal y polen almacenado de Apis mellifera (Hymenoptera: Apidae

    Directory of Open Access Journals (Sweden)

    Sánchez Nieves Jimena

    2005-12-01

    Full Text Available Se caracterizaron los microorganismos cultivables asociados con Apis mellifera. Las muestras fueron tomadas a partir de polen almacenado (joven y maduro y transportado en corbículas y
    tracto digestivo de abejas forrajeras y recién nacidas. Se aislaron bacterias pertenecientes a los géneros Pseudomonas, Streptococcus, Micrococcus, Lactobacillus, Klebsiella, Yersinia, Proteus y Arthrobacter y hongos de los géneros Rhizopus, Alternaria y Epicoccum. De acuerdo a sus propiedades bioquímicas, algunas de estas bacterias pueden estar involucradas en la degradación de los compuestos de la capa externa del polen y son adquiridas por las abejas a través del alimento y contacto con otros individuos de la colmena. La presencia de los hongos se explica por su amplia distribución
    en el ambiente, ya que los tres géneros se encuentran comúnmente en el suelo y en las plantas que las abejas pueden seleccionar como fuente de alimento.

  16. Electron spin resonance study of chromium(V) formation and decomposition by basalt-inhabiting bacteria.

    Science.gov (United States)

    Kalabegishvili, Tamaz L; Tsibakhashvili, Nelly Y; Holman, Hoi-Ying N

    2003-10-15

    Bacterial reduction of Cr(VI) to Cr(III) compounds may produce reactive intermediates Cr(V) and Cr(IV), which can affect the mobility and toxicity of chromium in environments. To address this important subject, we conducted an electron spin resonance (ESR) study to understand the kinetics of the formation and decomposition of Cr(V) during Cr(VI) reduction by different gram-positive Cr(VI)-tolerant bacteria, which were isolated from polluted basalts from the United States of America and the Republic of Georgia. Results from our batch experiments show that during Cr(VI) reduction, the macromolecules at the cell wall of these bacteria could act as an electron donor to Cr(VI) to form a stable square-pyramidal Cr(V) complexes, which were reduced further probably via a one-electron transfer pathway to form Cr(IV) and Cr(III) compounds. The Cr(V) peak at the ESR spectrum possessed superhyperfine splitting characteristic of the Cr(V) complexes with diol-containing molecules. It appears that the kinetics of Cr(V) formation and decomposition depended on the bacterial growth phase and on the species. Both formation and decomposition of Cr(V) occurred more quickly when Cr(VI) was added at the exponential phase. In comparison with other gram-positive bacteria from the republic of Georgia, the formation and decomposition of Cr(V) in Arthrobacter species from the Unites States was significantly slower.

  17. Isolation and characterization of influenza C virus inhibitor in rat serum.

    Science.gov (United States)

    Kitame, F; Nakamura, K; Saito, A; Sinohara, H; Homma, M

    1985-10-01

    Two hemagglutination inhibitors for influenza C virus were isolated from pooled sera of normal rats by sequential chromatography on Blue Sepharose CL 6B, Ultrogel AcA 22, and DEAE-cellulose. The two inhibitors were identified as alpha 1-macroglobulin and murinoglobulin by comparison with the authentic samples. These inhibitors abolished the hemagglutination by influenza C virus strains but did not affect the hemagglutination by influenza A and B virus strains. Hemagglutination inhibition activity of both inhibitors was completely destroyed by incubation with influenza C virus at 37 degrees C but not with the other types of influenza virus, indicating that the inhibitors are specific for influenza C virus. The inhibitory activity was also destroyed by incubation with neuraminidase from Arthrobacter ureafaciens. By contrast, no activity was lost after treatment with neuraminidase from Vibrio cholerae. These results suggest that the sialic acid residue(s) which is cleavable by the former neuraminidase but not by the latter is essential for the hemagglutination inhibition. The two inhibitors were inactivated by treating with sodium hydroxide and methylamine but not with sodium metaperiodate.

  18. Enhanced behavioral response by decreasing brain oxidative stress to 6-hydroxy-l-nicotine in Alzheimer's disease rat model.

    Science.gov (United States)

    Hritcu, Lucian; Stefan, Marius; Brandsch, Roderich; Mihasan, Marius

    2015-03-30

    6-Hydroxy-l-nicotine (6HLN) is a nicotine metabolite resulted from nicotine degradation within Arthrobacter nicotinovorans with positive effects on spatial memory and oxidative stress damage. In the present study, the effects of 6HLN on spatial memory performance were assessed in scopolamine-treated rats. Scopolamine-induced memory impairments were observed, as measured by the Y-maze and radial arm-maze tasks. Decreased activities of superoxide dismutase, glutathione peroxidase and catalase along with decrease of total content of reduced glutathione were observed in the rat hippocampal homogenates of scopolamine-treated animals as compared with control. Production of malondialdehyde (lipid peroxidation) significantly increased in the rat hippocampal homogenates of scopolamine-treated animals as compared with control, as a consequence of impaired antioxidant enzymes activities. Additionally, in scopolamine-treated rats 6HLN significantly improved memory formation and decreased oxidative stress, suggesting memory-enhancing and antioxidant effects. Therefore, our results suggest that administration of 6HLN ameliorates scopolamine-induced spatial memory impairment by attenuation of the oxidative stress in the rat hippocampus.

  19. Nicotine versus 6-hydroxy-l-nicotine against chlorisondamine induced memory impairment and oxidative stress in the rat hippocampus.

    Science.gov (United States)

    Hritcu, Lucian; Ionita, Radu; Motei, Diana Elena; Babii, Cornelia; Stefan, Marius; Mihasan, Marius

    2017-02-01

    6-Hydroxy-l-nicotine (6HLN), a nicotine derivative from nicotine degradation by Arthrobacter nicotinovorans pAO1 strain was found to improve behavioral deficits and to reverse oxidative stress in the rat hippocampus. Rats were given CHL (10mg/kg, i.p.) were used as an Alzheimer's disease-like model. The nicotine (0.3mg/kg) and 6HLN (0.3mg/kg) were administered alone or in combination in the CHL-treated rats. Memory-related behaviors were evaluated using Y-maze and radial arm-maze tests. The antioxidant enzymes activity and the levels of the biomarkers of oxidative stress were measured in the hippocampus. Statistical analyses were performed using two-way ANOVA and Tukey's post hoc test. F values for which pmemory deficits and oxidative stress enhancing were observed. Both nicotine and 6HLN administration attenuated the cognitive deficits and recovered the antioxidant capacity in the rat hippocampus of the CHL rat model. Our results suggest that 6HLN versus nicotine confers anti-amnesic properties in the CHL-induced a rat model of memory impairment via reversing cholinergic function and decreasing brain oxidative stress, suggesting the use of this compound as an alternative agent in AD treatment.

  20. Antimicrobial Activity of Monoramnholipids Produced by Bacterial Strains Isolated from the Ross Sea (Antarctica

    Directory of Open Access Journals (Sweden)

    Pietro Tedesco

    2016-04-01

    Full Text Available Microorganisms living in extreme environments represent a huge reservoir of novel antimicrobial compounds and possibly of novel chemical families. Antarctica is one of the most extraordinary places on Earth and exhibits many distinctive features. Antarctic microorganisms are well known producers of valuable secondary metabolites. Specifically, several Antarctic strains have been reported to inhibit opportunistic human pathogens strains belonging to Burkholderia cepacia complex (Bcc. Herein, we applied a biodiscovery pipeline for the identification of anti-Bcc compounds. Antarctic sub-sea sediments were collected from the Ross Sea, and used to isolate 25 microorganisms, which were phylogenetically affiliated to three bacterial genera (Psychrobacter, Arthrobacter, and Pseudomonas via sequencing and analysis of 16S rRNA genes. They were then subjected to a primary cell-based screening to determine their bioactivity against Bcc strains. Positive isolates were used to produce crude extracts from microbial spent culture media, to perform the secondary screening. Strain Pseudomonas BNT1 was then selected for bioassay-guided purification employing SPE and HPLC. Finally, LC-MS and NMR structurally resolved the purified bioactive compounds. With this strategy, we achieved the isolation of three rhamnolipids, two of which were new, endowed with high (MIC < 1 μg/mL and unreported antimicrobial activity against Bcc strains.

  1. Antimicrobial Activity of Monoramnholipids Produced by Bacterial Strains Isolated from the Ross Sea (Antarctica) †

    Science.gov (United States)

    Tedesco, Pietro; Maida, Isabel; Palma Esposito, Fortunato; Tortorella, Emiliana; Subko, Karolina; Ezeofor, Chidinma Christiana; Zhang, Ying; Tabudravu, Jioji; Jaspars, Marcel; Fani, Renato; de Pascale, Donatella

    2016-01-01

    Microorganisms living in extreme environments represent a huge reservoir of novel antimicrobial compounds and possibly of novel chemical families. Antarctica is one of the most extraordinary places on Earth and exhibits many distinctive features. Antarctic microorganisms are well known producers of valuable secondary metabolites. Specifically, several Antarctic strains have been reported to inhibit opportunistic human pathogens strains belonging to Burkholderia cepacia complex (Bcc). Herein, we applied a biodiscovery pipeline for the identification of anti-Bcc compounds. Antarctic sub-sea sediments were collected from the Ross Sea, and used to isolate 25 microorganisms, which were phylogenetically affiliated to three bacterial genera (Psychrobacter, Arthrobacter, and Pseudomonas) via sequencing and analysis of 16S rRNA genes. They were then subjected to a primary cell-based screening to determine their bioactivity against Bcc strains. Positive isolates were used to produce crude extracts from microbial spent culture media, to perform the secondary screening. Strain Pseudomonas BNT1 was then selected for bioassay-guided purification employing SPE and HPLC. Finally, LC-MS and NMR structurally resolved the purified bioactive compounds. With this strategy, we achieved the isolation of three rhamnolipids, two of which were new, endowed with high (MIC < 1 μg/mL) and unreported antimicrobial activity against Bcc strains. PMID:27128927

  2. Application of alkaliphilic biofilm-forming bacteria to improve compressive strength of cement-sand mortar.

    Science.gov (United States)

    Park, Sung-Jin; Chun, Woo-Young; Kim, Wha-Jung; Ghim, Sa-Youl

    2012-03-01

    The application of microorganisms in the field of construction material is rapidly increasing worldwide; however, almost all studies that were investigated were bacterial sources with mineral-producing activity and not with organic substances. The difference in the efficiency of using bacteria as an organic agent is that it could improve the durability of cement material. This study aimed to assess the use of biofilm-forming microorganisms as binding agents to increase the compressive strength of cement-sand material. We isolated 13 alkaliphilic biofilmforming bacteria (ABB) from a cement tetrapod block in the West Sea, Korea. Using 16S RNA sequence analysis, the ABB were partially identified as Bacillus algicola KNUC501 and Exiguobacterium marinum KNUC513. KNUC513 was selected for further study following analysis of pH and biofilm formation. Cement-sand mortar cubes containing KNUC513 exhibited greater compressive strength than mineral-forming bacteria (Sporosarcina pasteurii and Arthrobacter crystallopoietes KNUC403). To determine the biofilm effect, Dnase I was used to suppress the biofilm formation of KNUC513. Field emission scanning electron microscopy image revealed the direct involvement of organic-inorganic substance in cement-sand mortar.

  3. Calcite-forming bacteria for compressive strength improvement in mortar.

    Science.gov (United States)

    Park, Sung-Jin; Park, Yu-Mi; Chun, Woo-Young; Kim, Wha-Jung; Ghim, Sa-Youl

    2010-04-01

    Microbiological calcium carbonate precipitation (MCP) has been investigated for its ability to improve the compressive strength of concrete mortar. However, very few studies have been conducted on the use of calcite-forming bacteria (CFB) to improve compressive strength. In this study, we discovered new bacterial genera that are capable of improving the compressive strength of concrete mortar. We isolated 4 CFB from 7 environmental concrete structures. Using sequence analysis of the 16S rRNA genes, the CFB could be partially identified as Sporosarcina soli KNUC401, Bacillus massiliensis KNUC402, Arthrobacter crystallopoietes KNUC403, and Lysinibacillus fusiformis KNUC404. Crystal aggregates were apparent in the bacterial colonies grown on an agar medium. Stereomicroscopy, scanning electron microscopy, and x-ray diffraction analyses illustrated both the crystal growth and the crystalline structure of the CaCO3 crystals. We used the isolates to improve the compressive strength of concrete mortar cubes and found that KNUC403 offered the best improvement in compressive strength.

  4. Determinants of bacterial communities in Canadian agroforestry systems.

    Science.gov (United States)

    Banerjee, Samiran; Baah-Acheamfour, Mark; Carlyle, Cameron N; Bissett, Andrew; Richardson, Alan E; Siddique, Tariq; Bork, Edward W; Chang, Scott X

    2016-06-01

    Land-use change is one of the most important factors influencing soil microbial communities, which play a pivotal role in most biogeochemical and ecological processes. Using agroforestry systems as a model, this study examined the effects of land uses and edaphic properties on bacterial communities in three agroforestry types covering a 270 km soil-climate gradient in Alberta, Canada. Our results demonstrate that land-use patterns exert stronger effects on soil bacterial communities than soil zones in these agroforestry systems. Plots with trees in agroforestry systems promoted greater bacterial abundance and to some extent species richness, which was associated with more nutrient-rich soil resources. While Acidobacteria, Actinobacteria and Alphaproteobacteria were the dominant bacterial phyla and subphyla across land uses, Arthrobacter, Acidobacteria_Gp16, Burkholderia, Rhodanobacter and Rhizobium were the keystone taxa in these agroforestry systems. Soil pH and carbon contents emerged as the major determinants of bacterial community characteristics. We found non-random co-occurrence and modular patterns of soil bacterial communities, and these patterns were controlled by edaphic factors and not their taxonomy. Overall, this study highlights the drivers and co-occurrence patterns of soil microbial communities in agroforestry systems.

  5. MICROBIOTA OF PINUS POLLEN AS ADJUVANT FACTOR OF ALLERGY

    Directory of Open Access Journals (Sweden)

    Tetiana Shevtsova

    2016-06-01

    Full Text Available Bacteria, their endotoxin and mold found on pollen can be a reason of respiratory symptoms in sensitized individuals. This question concerns an anemophilous pollen more acute. In this work quantitative by dilution plating method and qualitative microbial analysis by MALDI-TOF MS Biotyper of pollen and other plants organs of Pinus sylvestris L., P. nigra Arnold, P. mugo Turra, P. armandii Franch., P. wallichiana A.B. Jacks from Nitra, Slovakia are performed which shows quantitative and species differences in mesophilic aerobic (0.00-6.27 log cfu/g and anaerobic bacteria (0.00-3.70 log cfu/g, enterococci (0.00 log cfu/g, coliform bacteria (0.00-5.29 log cfu/g, lactobacilli (0.00-4.20 log cfu/g, microscopic fungi and yeasts (2.60-5.29 log cfu/g content. Representatives of Pseudomonas (14, Bacillus (2, Acinetobacter (1, Arthrobacter (1, Pantoea (1, Klebsiella (1, Penicillium (6, Aspergillus (4, Cladosporium (1, Debaryomyces (1 genera were revealed on pine trees. The allergenic potential of the identified association of microorganisms on pollen has been evaluated based on published data. The results may be useful for aerobiologists, allergists and microbiologists, at least at the local level.

  6. Isolation ,identification and spoilage ability analysis on the particular spoilage bacteria of penaeus vannamei in the ice temperature storage%冰温贮藏中南美白对虾特定腐败菌的分离鉴定及其腐败能力分析

    Institute of Scientific and Technical Information of China (English)

    谢丽丹; 李蕾蕾; 王素英; 董世瑞

    2016-01-01

    为了分离鉴定南美白对虾在冰温贮藏条件下的腐败菌,并分析其腐败能力的大小.通过冻结实验,确定南美白对虾的冰点,在0℃与冰点之间贮藏南美白对虾,从中分离腐败菌,进行形态学观察和分子生物学鉴定,将分离得到的腐败菌接种至灭菌虾汁中,通过产硫化氢,降解蛋白质,产挥发性盐基氮(TVB-N)的测定衡量腐败能力的大小.结果表明:从南美白对虾中分离得到12株腐败菌,分别是Shewanella hafniensis,Acinetobacter johnsonii,Planoccoccus citreus,Bacillus cereus,Acinetobacter beijerinckii,Enterobacter hormaechei,Arthrobacter bergeri,Bacillus licheniformis,未鉴定出的菌株X1和X10.在冰温贮藏条件下,导致南美白对虾腐败的优势腐败菌依次是Shewanella hafniensis、X1、Acinetobacter johnsonii和Acinetobacter beijerinckii.

  7. Isolation and characterization of novel chitinolytic bacteria

    Science.gov (United States)

    Gürkök, Sümeyra; Görmez, Arzu

    2016-04-01

    Chitin, a linear polymer of β-1,4-N-acetylglucosamine units, is one of the most abundant biopolymers widely distributed in the marine and terrestrial environments. It is found as a structural component of insects, crustaceans and the cell walls of fungi. Chitinases, the enzymes degrading chitin by cleaving the β-(1-4) bond, have gained increased attention due to their wide range of biotechnological applications, especially for biocontrol of harmful insects and phytopathogenic fungi in agriculture. In the present study, 200 bacterial isolates from Western Anatolia Region of Turkey were screened for chitinolytic activity on agar media amended with colloidal chitin. Based on the chitin hydrolysis zone, 13 isolates were selected for further study. Bacterial isolates with the highest chitinase activity were identified as Acinetobacter calcoaceticus, Arthrobacter oxydans, Bacillus cereus, Bacillus megaterium, Brevibacillus reuszeri, Kocuria erythromyxa, Kocuria rosea, Novosphingobium capsulatum, Rhodococcus bratislaviensis, Rhodococcus fascians and Staphylococcus cohnii by MIS and BIOLOG systems. The next aims of the study are to compare the productivity of these bacteria quantitatively, to purify the enzyme from the most potent producer and to apply the pure enzyme for the fight against the phytopathogenic fungi and harmful insects.

  8. Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil

    Science.gov (United States)

    Zheng, Bang-Xiao; Hao, Xiu-Li; Ding, Kai; Zhou, Guo-Wei; Chen, Qing-Lin; Zhang, Jia-Bao; Zhu, Yong-Guan

    2017-02-01

    Inorganic phosphate solubilizing bacteria (iPSB) are essential to facilitate phosphorus (P) mobilization in alkaline soil, however, the phylogenetic structure of iPSB communities remains poorly characterized. Thus, we use a reference iPSB database to analyze the distribution of iPSB communities based on 16S rRNA gene illumina sequencing. Additionally, a noval pqqC primer was developed to quantify iPSB abundance. In our study, an alkaline soil with 27-year fertilization treatment was selected. The percentage of iPSB was 1.10~2.87% per sample, and the dominant iPSB genera were closely related to Arthrobacter, Bacillus, Brevibacterium and Streptomyces. Long-term P fertilization had no significant effect on the abundance of iPSB communities. Rather than P and potassium (K) additions, long-term nitrogen (N) fertilization decreased the iPSB abundance, which was validated by reduced relative abundance of pqqC gene (pqqC/16S). The decreased iPSB abundance was strongly related to pH decline and total N increase, revealing that the long-term N additions may cause pH decline and subsequent P releases relatively decreasing the demands of the iPSB community. The methodology and understanding obtained here provides insights into the ecology of inorganic P solubilizers and how to manipulate for better P use efficiency.

  9. Appraising bacterial strains for rapid BOD sensing--an empirical test to identify bacterial strains capable of reliably predicting real effluent BODs.

    Science.gov (United States)

    Webber, Judith B; Noonan, Mike; Pasco, Neil F; Hay, Joanne M

    2011-01-01

    The measured response of rapid biochemical oxygen demand (BOD) biosensors is often not identical to those measured using the conventional 5-day BOD assay. This paper highlights the efficacy of using both glucose-glutamic acid (GGA) and Organisation for Economic Cooperation and Development (OECD) BOD standards as a rapid screen for microorganisms most likely to reliably predict real effluent BODs when used in rapid BOD devices. Using these two synthetic BOD standards, a microorganism was identified that produced comparable BOD response profiles for two assays, the MICREDOX® assay and the conventional 5-day BOD(5) test. A factorial experimental design systematically evaluated the impact of four factors (microbial strain, growth media composition, media strength, and microbial growth phase) on the BOD response profiles using GGA and OECD synthetic standard substrates. An outlier was identified that showed an improved correlation between the MICREDOX® BOD (BOD(sens)) and BOD(5) assays for both the synthetic standards and for real wastewater samples. Microbial strain was the dominant factor influencing BOD(sens) values, with Arthrobacter globiformis single cultures clearly demonstrating superior rapid BOD(sens) response profiles for both synthetic and real waste samples. It was the only microorganism to approach the BOD(5) response for the OECD substrate (171 mg O(2)L(-1)), and also reported BOD values for real waste samples that were comparable to those produced by the BOD(5) test, including discriminating between filtered and unfiltered samples.

  10. Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil

    Science.gov (United States)

    Zheng, Bang-Xiao; Hao, Xiu-Li; Ding, Kai; Zhou, Guo-Wei; Chen, Qing-Lin; Zhang, Jia-Bao; Zhu, Yong-Guan

    2017-01-01

    Inorganic phosphate solubilizing bacteria (iPSB) are essential to facilitate phosphorus (P) mobilization in alkaline soil, however, the phylogenetic structure of iPSB communities remains poorly characterized. Thus, we use a reference iPSB database to analyze the distribution of iPSB communities based on 16S rRNA gene illumina sequencing. Additionally, a noval pqqC primer was developed to quantify iPSB abundance. In our study, an alkaline soil with 27-year fertilization treatment was selected. The percentage of iPSB was 1.10~2.87% per sample, and the dominant iPSB genera were closely related to Arthrobacter, Bacillus, Brevibacterium and Streptomyces. Long-term P fertilization had no significant effect on the abundance of iPSB communities. Rather than P and potassium (K) additions, long-term nitrogen (N) fertilization decreased the iPSB abundance, which was validated by reduced relative abundance of pqqC gene (pqqC/16S). The decreased iPSB abundance was strongly related to pH decline and total N increase, revealing that the long-term N additions may cause pH decline and subsequent P releases relatively decreasing the demands of the iPSB community. The methodology and understanding obtained here provides insights into the ecology of inorganic P solubilizers and how to manipulate for better P use efficiency. PMID:28181569

  11. Life history correlates of fecal bacterial species richness in a wild population of the blue tit Cyanistes caeruleus.

    Science.gov (United States)

    Benskin, Clare McW H; Rhodes, Glenn; Pickup, Roger W; Mainwaring, Mark C; Wilson, Kenneth; Hartley, Ian R

    2015-02-01

    Very little is known about the normal gastrointestinal flora of wild birds, or how it might affect or reflect the host's life-history traits. The aim of this study was to survey the species richness of bacteria in the feces of a wild population of blue tits Cyanistes caeruleus and to explore the relationships between bacterial species richness and various life-history traits, such as age, sex, and reproductive success. Using PCR-TGGE, 55 operational taxonomic units (OTUs) were identified in blue tit feces. DNA sequencing revealed that the 16S rRNA gene was amplified from a diverse range of bacteria, including those that shared closest homology with Bacillus licheniformis, Campylobacter lari, Pseudomonas spp., and Salmonella spp. For adults, there was a significant negative relationship between bacterial species richness and the likelihood of being detected alive the following breeding season; bacterial richness was consistent across years but declined through the breeding season; and breeding pairs had significantly more similar bacterial richness than expected by chance alone. Reduced adult survival was correlated with the presence of an OTU most closely resembling C. lari; enhanced adult survival was associated with an OTU most similar to Arthrobacter spp. For nestlings, there was no significant change in bacterial species richness between the first and second week after hatching, and nestlings sharing the same nest had significantly more similar bacterial richness. Collectively, these results provide compelling evidence that bacterial species richness was associated with several aspects of the life history of their hosts.

  12. Allergic alveolitis among agricultural workers in eastern Poland: a study of twenty cases.

    Science.gov (United States)

    Milanowski, J; Dutkiewicz, J; Potoczna, H; Kuś, L; Urbanowicz, B

    1998-01-01

    The aim of this study was to identify the specific agents which caused extrinsic allergic alveolitis (EAA) in the selected group of 20 agricultural workers from eastern Poland. The microbiological analysis of the samples of plant materials or dusts reported by the patients as causing symptoms has been carried out, followed by allergological tests (inhalation challenge, agar-gel precipitation test, inhibition of leukocyte migration, skin test) with extrinsic microbial antigens. It was found that the causative agents of allergic alveolitis in the examined group of patients were mesophilic, non-branching bacteria associated with grain dust, mostly Pantoea agglomerans (synonyms: Erwinia herbicola, Enterobacter agglomerans) and Arthrobacter globiformis (each in eight cases). The remaining agents were Alcaligenes faecalis (in two cases), and Brevibacterium linens and Staphylococcus epidermidis (in one case each). On the basis of the clinical picture, the bronchoalveolar lavage (BAL) and allergological tests, the diagnosis of the chronic form of the disease was stated in 14 patients and an acute form - in 6 patients. EAA patients demonstrated in the BAL fluid a typical lymphocytic alveolitis both in terms of percentage and absolute number of lymphocytes. Also, the numbers of eosinophils and neutrophils were significantly higher in EAA patients.

  13. Transformation of tomato with a bacterial codA gene enhances tolerance to salt and water stresses.

    Science.gov (United States)

    Goel, Deepa; Singh, Ajay K; Yadav, Vichita; Babbar, Shashi B; Murata, Norio; Bansal, Kailash C

    2011-07-15

    Genetically engineered tomato (Lycopersicon esculentum) with the ability to synthesize glycinebetaine was generated by introducing the codA gene encoding choline oxidase from Arthrobacter globiformis. Integration of the codA gene in transgenic tomato plants was verified by PCR analysis and DNA blot hybridization. Transgenic expression of gene was verified by RT-PCR analysis and RNA blot hybridization. The codA-transgenic plants showed higher tolerance to salt stress during seed germination, and subsequent growth of young seedlings than wild-type plants. The codA transgene enhanced the salt tolerance of whole plants and leaves. Mature leaves of codA-transgenic plants revealed higher levels of relative water content, chlorophyll content, and proline content than those of wild-type plants under salt and water stresses. Results from the current study suggest that the expression of the codA gene in transgenic tomato plants induces the synthesis of glycinebetaine and improves the tolerance of plants to salt and water stresses.

  14. Microbiology of healing mud (fango) from Roman thermae aquae iasae archaeological site (Varaždinske Toplice, Croatia).

    Science.gov (United States)

    Mulec, Janez; Krištůfek, Václav; Chroňáková, Alica; Oarga, Andreea; Scharfen, Josef; Šestauberová, Martina

    2015-02-01

    We found well-preserved, rocky artefacts that had been buried in the healing mud (fango) for more than 1,500 years at the Roman archaeological site at Varaždinske Toplice. This Roman pool with fango sediments and artefacts is fed from hot sulphidic springs. The fango exhibited nearly neutral pH, a high level of organic C, an elevated concentration of heavy metals and a high total microbial biomass, greater than 10(8) cells per gram of dry weight. The dominant microbes, assessed by molecular profiling (denaturing gradient gel electrophoresis), were affiliated with Thiobacillus, Sulfuricurvum, Polaromonas, and Bdellovibrio. Polymerase chain reaction screening for microbial functional guilds revealed the presence of sulphur oxidizers and methanogens but no sulphate reducers. The dominance of four Proteobacterial classes (α-, β-, δ- and ε-Proteobacteria) was confirmed by fluorescence in situ hybridisation; Actinobacteria were less abundant. Cultivable bacteria represented up to 23.4 % of the total bacterial counts when cultivation media was enriched with fango. These bacteria represented the genera Acinetobacter, Aeromonas, Arthrobacter, Comamonas, Ewingella, Flavobacterium, Pseudomonas, Rahnella and Staphylococcus. This study showed that the heterogeneous nature of fango at neutral pH created various microniches, which largely supported microbial life based on sulphur-driven, autotrophic denitrification.

  15. Survival of cheese-ripening microorganisms in a dynamic simulator of the gastrointestinal tract.

    Science.gov (United States)

    Adouard, Nadège; Magne, Laurent; Cattenoz, Thomas; Guillemin, Hervé; Foligné, Benoît; Picque, Daniel; Bonnarme, Pascal

    2016-02-01

    A mixture of nine microorganisms (six bacteria and three yeasts) from the microflora of surface-ripened cheeses were subjected to in vitro digestive stress in a three-compartment "dynamic gastrointestinal digester" (DIDGI). We studied the microorganisms (i) grown separately in culture medium only (ii) grown separately in culture medium and then mixed, (iii) grown separately in culture medium and then included in a rennet gel and (iv) grown together in smear-ripened cheese. The yeasts Geotrichum candidum, Kluyveromyces lactis and Debaryomyces hansenii, were strongly resistant to the whole DIDGI process (with a drop in viable cell counts of less than cheese-grown cultures. Ripening bacteria such as Hafnia alvei survived gastric stress less well when grown in cheese (with no viable cells after 90 min of exposure of the cheese matrix, compared with 6 CFU mL(-1) in lab cultures). The ability of Corynebacterium casei and Staphylococcus equorum to withstand digestive stress was similar for cheese and pure culture conditions. When grow in a cheese matrix, Brevibacterium aurantiacum and Arthrobacter arilaitensis were clearly more sensitive to the overall digestive process than when grown in pure cultures. Lactococcus lactis displayed poorer survival in gastric and duodenal compartments when it had been grown in cheese. In vivo experiments in BALB/c mice agreed with the DIDGI experiments and confirmed the latter's reliability.

  16. Microbial degradation of propoxur in turfgrass soil.

    Science.gov (United States)

    Ou, L T; Nkedi-Kizza, P; Cisar, J L; Snyder, G H

    1992-10-01

    This study was conducted to determine the degradation rates in turfgrass soil over a 12-month period after a single field application of propoxur and to isolate microorganisms from the soil capable of degrading the insecticide. Soil samples were collected from a turfgrass experimental site near Fort Lauderdale, FL one week before the field application of propoxur, and over a 12-month period after the field application. Mineralization rates in surface (0-15 cm depth) and subsurface (15-30 cm depth) soil samples collected before the field application were low. Mineralization in surface and subsurface samples collected 1, 6 and 8 months after the field application was much higher than for corresponding samples collected before the field application. Mineralization in the subsurface samples collected 12 months after the field application had reverted back to the similar rate for the corresponding sample collected before field application. Half-life values (t1/2) for propoxur showed similar trends to the results of mineralization. After a single application of propoxur, degradation in turfgrass soil was enhanced. Such enhancement lasted less than 12 months for the subsurface, but more than 12 months for the surface. A strain of Arthrobacter sp. capable of degrading propoxur was isolated from the soil.

  17. Isolation of a bacteriocin-producing lactococcus lactis and application of its bacteriocin to manage spoilage bacteria in high-value marine fish under different storage temperatures.

    Science.gov (United States)

    Sarika, A R; Lipton, A P; Aishwarya, M S; Dhivya, R S

    2012-07-01

    The bacteriocins of lactic acid bacteria have considerable potential for biopreservation. The Lactococcus lactis strain PSY2 (GenBank account no. JF703669) isolated from the surface of marine perch Perca flavescens produced antibacterial activity against pathogenic and spoilage-causing Gram-positive and Gram-negative bacteria viz. Arthrobacter sp., Acinetobacter sp., Bacillus subtilis, Escherichia coli, Listeria monocytogenes, Pseudomonas aeruginosa and Staphylococcus aureus and possessed broad inhibitory spectrum. The biopreservative efficacy of the bacteriocin PSY2 was evaluated using fillets of reef cod, Epinephelus diacanthus. The fillets (10 g) were sprayed with 2.0 ml of 1,600 AU/ml bacteriocin, wrapped and kept under different storage temperatures viz., 4, 0 and -18 °C. The biopreservative extended the shelf-life of fillets stored at 4 °C to >21 days as against bacteriocin-treated samples stored for 21 days at 4 °C while the untreated samples became unacceptable by the 14th day. The biopreservative gave no significant effect at -18 °C. Thus, the bacteriocin derived from L. lactis PSY2 gave increased protection against spoilage bacteria and offers an alternative for the preservation of high-value sea foods.

  18. Bioremediation of an area contaminated by a fuel spill.

    Science.gov (United States)

    Vallejo, B; Izquierdo, A; Blasco, R; Pérez del Campo, P; Luque de Castro, M D

    2001-06-01

    In order to decontaminate a large area of restricted access contaminated by a fuel spill, laboratory and field studies were developed in two steps: (a) monitoring of the laboratory experiment on bacterial growth under aerobic and anaerobic conditions with and without addition of nutrients; and (b) use of the best conditions obtained in (a) for the decontamination of the soil. A hydraulic barrier was installed both to clean the aquifer and to avoid migration of hydrocarbons as a consequence of their solution in the groundwater and subsequent displacement. The objective was to create an ideal environment for the treatment of the affected area that favoured the growth of the indigenous bacteria (Pseudomonas and Arthrobacter) that biodegrade the hydrocarbons. Monitoring of the changes in the total concentration of petroleum hydrocarbons in the soil subjected to bacterial action was performed by gas chromatography. In a field study, the progress of biodegradation of hydrocarbons was evaluated in situ by changes in subsurface CO2/O2 levels by means of an analyser equipped with an infrared detector. Biostimulation and oxygen were the most influential factors for the biodegradation of the hydrocarbons. The use of bioventing of the soil was shown as an excellent technology to promote in situ bioremediation of the polluted area.

  19. Characterization of microbial contamination in United States Air Force aviation fuel tanks.

    Science.gov (United States)

    Rauch, Michelle E; Graef, Harold W; Rozenzhak, Sophie M; Jones, Sharon E; Bleckmann, Charles A; Kruger, Randell L; Naik, Rajesh R; Stone, Morley O

    2006-01-01

    Bacteria and fungi, isolated from United States Air Force (USAF) aviation fuel samples, were identified by gas chromatograph fatty acid methyl ester (GC-FAME) profiling and 16S or 18S rRNA gene sequencing. Thirty-six samples from 11 geographically separated USAF bases were collected. At each base, an above-ground storage tank, a refueling truck, and an aircraft wing tank were sampled at the lowest sample point, or sump, to investigate microbial diversity and dispersion within the fuel distribution chain. Twelve genera, including four Bacillus species and two Staphylococcus species, were isolated and identified. Bacillus licheniformis, the most prevalent organism isolated, was found at seven of the 11 bases. Of the organisms identified, Bacillus sp., Micrococcus luteus, Sphinogmonas sp., Staphylococcus sp., and the fungus Aureobasidium pullulans have previously been isolated from aviation fuel samples. The bacteria Pantoea ananatis, Arthrobacter sp., Alcaligenes sp., Kocuria rhizophilia, Leucobacter komagatae, Dietza sp., and the fungus Discophaerina fagi have not been previously reported in USAF aviation fuel. Only at two bases were the same organisms isolated from all three sample points in the fuel supply distribution chain. Isolation of previously undocumented organisms suggests either, changes in aviation fuel microbial community in response to changes in aviation fuel composition, additives and biocide use, or simply, improvements in isolation and identification techniques.

  20. Enzyme activity determination on macromolecular substrates by isothermal titration calorimetry: application to mesophilic and psychrophilic chitinases.

    Science.gov (United States)

    Lonhienne, T; Baise, E; Feller, G; Bouriotis, V; Gerday, C

    2001-02-09

    Isothermal titration calorimetry has been applied to the determination of the kinetic parameters of chitinases (EC 3.2.1.14) by monitoring the heat released during the hydrolysis of chitin glycosidic bonds. Experiments were carried out using two different macromolecular substrates: a soluble polymer of N-acetylglucosamine and the insoluble chitin from crab shells. Different experimental temperatures were used in order to compare the thermodependence of the activity of two chitinases from the psychrophile Arthrobacter sp. TAD20 and of chitinase A from the mesophile Serratia marcescens. The method allowed to determine unequivocally the catalytic rate constant k(cat), the activation energy (E(a)) and the thermodynamic activation parameters (DeltaG(#), DeltaH(#), DeltaS(#)) of the chitinolytic reaction on the soluble substrate. The catalytic activity has also been determined on insoluble chitin, which displays an effect of substrate saturation by chitinases. On both substrates, the thermodependence of the activity of the psychrophilic chitinases was lower than that observed with the mesophilic counterpart.

  1. Bioremoval of diethylketone by the synergistic combination of microorganisms and clays: uptake, removal and kinetic studies.

    Science.gov (United States)

    Quintelas, Cristina; Costa, Filomena; Tavares, Teresa

    2013-03-01

    The performance of two bacteria, Arthrobacter viscosus and Streptococcus equisimilis, and the effect of the interaction of these bacteria with four different clays on the retention of diethylketone were investigated in batch experiments. The uptake, the removal percentages and the kinetics of the processes were determined. S. equisimilis, by itself, had the best performance in terms of removal percentage, for all the initial diethylketone concentrations tested: 200, 350 and 700 mg/L. The uptake values are similar for both bacteria. A possible mechanism to explain the removal of diethylketone includes its degradation by bacteria, followed by the adsorption of the intermediates/sub-products by the functional groups present on the cells' surfaces. The assays performed with bacteria and clays indicated that the uptake values are similar despite of the clay used, for the same microorganism and mass of clay, but in general, higher values are reached when S. equisimilis is used, compared to A. viscosus. Kinetic data were described by pseudo-first- and pseudo-second-order models.

  2. Effect of salt-tolerant plant growth-promoting rhizobacteria on wheat plants and soil health in a saline environment.

    Science.gov (United States)

    Upadhyay, S K; Singh, D P

    2015-01-01

    Salt-tolerant plant growth-promoting rhizobacteria (ST-PGPR) significantly influence the growth and yield of wheat crops in saline soil. Wheat growth improved in pots with inoculation of all nine ST-PGPR (ECe = 4.3 dS·m(-1) ; greenhouse experiment), while maximum growth and dry biomass was observed in isolate SU18 Arthrobacter sp.; simultaneously, all ST-PGPR improved soil health in treated pot soil over controls. In the field experiment, maximum wheat root dry weight and shoot biomass was observed after inoculation with SU44 B. aquimaris, and SU8 B. aquimaris, respectively, after 60 and 90 days. Isolate SU8 B. aquimaris, induced significantly higher proline and total soluble sugar accumulation in wheat, while isolate SU44 B. aquimaris, resulted in higher accumulation of reducing sugars after 60 days. Percentage nitrogen (N), potassium (K) and phosphorus (P) in leaves of wheat increased significantly after inoculation with ST-PGPR, as compared to un-inoculated plants. Isolate SU47 B. subtilis showed maximum reduction of sodium (Na) content in wheat leaves of about 23% at both 60 and 90 days after sowing, and produced the best yield of around 17.8% more than the control.

  3. Variability of sediment-contact tests in freshwater sediments with low-level anthropogenic contamination - Determination of toxicity thresholds

    Energy Technology Data Exchange (ETDEWEB)

    Hoess, S., E-mail: hoess@ecossa.d [Ecossa, Giselastr. 6, 82319 Starnberg (Germany); Institute of Biodiversity - Network (IBN), Dreikronengasse 2, 93047 Regensburg (Germany); Ahlf, W., E-mail: ahlf@tu-harburg.d [Institute of Environmental Technology and Energy Economics, Technical University Hamburg-Harburg, Eissendorfer Str. 40, 21071 Hamburg (Germany); Fahnenstich, C. [Institute of Environmental Technology and Energy Economics, Technical University Hamburg-Harburg, Eissendorfer Str. 40, 21071 Hamburg (Germany); Gilberg, D., E-mail: d-gilberg@ect.d [ECT Oekotoxikologie, Boettgerstr. 2-14, 65439 Floersheim (Germany); Hollert, H., E-mail: henner.hollert@bio5.rwth-aachen.d [Department of Ecosystem Analysis, Institute for Environmental Research (Biology 5), RWTH Aachen University, Worringerweg 1, 52074 Aachen (Germany); Melbye, K. [Dr. Fintelmann and Dr. Meyer, Mendelssohnstr. 15D, 22761 Hamburg (Germany); Meller, M., E-mail: m-meller@ecotox-consult.d [ECT Oekotoxikologie, Boettgerstr. 2-14, 65439 Floersheim (Germany); Hammers-Wirtz, M., E-mail: hammers-wirtz@gaiac.rwth-aachen.d [Research Institute for Ecosystem Analysis and Assessment (gaiac), RWTH Aachen University, Worringerweg 1, 52056 Aachen (Germany); Heininger, P., E-mail: heininger@bafg.d [Federal Institute of Hydrology (BfG), Am Mainzer Tor 1, 56070 Koblenz (Germany); Neumann-Hensel, H., E-mail: hensel@fintelmann-meyer.d [Dr. Fintelmann and Dr. Meyer, Mendelssohnstr. 15D, 22761 Hamburg (Germany); Ottermanns, R., E-mail: ottermanns@bio5.rwth-aachen.d [Chair for Environmental Biology and Chemodynamics, Institute for Environmental Research (Biology 5), RWTH Aachen University, Worringerweg 1, 52074 Aachen (Germany); Ratte, H.-T., E-mail: toni.ratte@bio5.rwth-aachen.d [Chair for Environmental Biology and Chemodynamics, Institute for Environmental Research (Biology 5), RWTH Aachen University, Worringerweg 1, 52074 Aachen (Germany)

    2010-09-15

    Freshwater sediments with low levels of anthropogenic contamination and a broad range of geochemical properties were investigated using various sediment-contact tests in order to study the natural variability and to define toxicity thresholds for the various toxicity endpoints. Tests were performed with bacteria (Arthrobacter globiformis), yeast (Saccharomyces cerevisiae), nematodes (Caenorhabditis elegans), oligochaetes (Lumbriculus variegatus), higher plants (Myriophyllum aquaticum), and the eggs of zebrafish (Danio rerio). The variability in the response of some of the contact tests could be explained by particle size distribution and organic content. Only for two native sediments could a pollution effect not be excluded. Based on the minimal detectable difference (MDD) and the maximal tolerable inhibition (MTI), toxicity thresholds (% inhibition compared to the control) were derived for each toxicity parameter: >20% for plant growth and fish-egg survival, >25% for nematode growth and oligochaete reproduction, >50% for nematode reproduction and >60% for bacterial enzyme activity. - Sediment-contact tests require toxicity thresholds based on their variability in native sediments with low-level contamination.

  4. Isolation of Endophytic Plant Growth-Promoting Bacteria Associated with the Halophyte Salicornia europaea and Evaluation of their Promoting Activity Under Salt Stress.

    Science.gov (United States)

    Zhao, Shuai; Zhou, Na; Zhao, Zheng-Yong; Zhang, Ke; Wu, Guo-Hua; Tian, Chang-Yan

    2016-10-01

    Several reports have highlighted that many plant growth-promoting endophytic bacteria (PGPE) can assist their host plants in coping with various biotic and abiotic stresses. However, information about the PGPE colonizing in the halophytes is still scarce. This study was designed to isolate and characterize PGPE from salt-accumulating halophyte Salicornia europaea grown under extreme salinity and to evaluate in vitro the bacterial mechanisms related to plant growth promotion. A total of 105 isolates were obtained from the surface-sterilized roots, stems, and assimilation twigs of S. europaea. Thirty-two isolates were initially selected for their ability to produce 1-aminocyclopropane-1-carboxylate deaminase as well as other properties such as production of indole-3-acetic acid and phosphate-solubilizing activities. The 16S rRNA gene-sequencing analysis revealed that these isolates belong to 13 different genera and 19 bacterial species. For these 32 strains, seed germination and seedling growth in axenically grown S. europaea seedlings at different NaCl concentrations (50-500 mM) were quantified. Five isolates possessing significant stimulation of the host plant growth were obtained. The five isolates were identified as Bacillus endophyticus, Bacillus tequilensis, Planococcus rifietoensis, Variovorax paradoxus, and Arthrobacter agilis. All the five strains could colonize and can be reisolated from the host plant interior tissues. These results demonstrate that habitat-adapted PGPE isolated from halophyte could enhance plant growth under saline stress conditions.

  5. Characterization and in-vivo evaluation of potential probiotics of the bacterial flora within the water column of a healthy shrimp larviculture system

    Science.gov (United States)

    Xue, Ming; Liang, Huafang; He, Yaoyao; Wen, Chongqing

    2016-05-01

    A thorough understanding of the normal bacterial flora associated with shrimp larviculture systems contributes to probiotic screening and disease control. The bacterial community of the water column over a commercial Litopenaeus vannamei larval rearing run was characterized with both culture-dependent and culture-independent methods. A total of 27 phylotypes at the species level were isolated and identified based on 16S rDNA sequence analysis. Denaturing gradient gel electrophoresis (DGGE) analysis of the V3-V5 region of 16S rRNA genes showed a dynamic bacterial community with major changes occurred from stages zoea to mysis during the rearing run. The sequences retrieved were affiliated to four phyla, Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes, with the family Rhodobacteraceae being the most frequently recovered one. Subsequently, 13 representative strains conferred higher larval survival than the control when evaluated in the in-vivo experiments; in particular, three candidates, assigned to Phaeobacter sp., Arthrobacter sp., and Microbacterium sp., significantly improved larval survival ( P probiotics.

  6. Biosorption of heavy metals by Pseudomonas species isolated from sugar industry.

    Science.gov (United States)

    Naz, Tayyaba; Khan, Muhammad Daud; Ahmed, Iftikhar; Rehman, Shafiq Ur; Rha, Eui Shik; Malook, Ijaz; Jamil, Muhammad

    2016-09-01

    Heavy metal-resistant bacteria can be efficient bioremediators of metals and may provide an alternative or additional method to conventional methods of metal removal. In this study, 10 bacterial isolates were isolated from soil samples of a sugar industry, located at Peshawar, Pakistan. Morphological, physiological, and biochemical characteristics of these isolates were observed. Sequence analysis (16S ribosomal RNA) revealed that isolated strains were closely related to the species belonging to the genera Pseudomonas, Arthrobacter, Exiguobacterium, Citrobacter, and Enterobacter Bacterial isolates were resistant with a minimum inhibitory concentration (500-900 ppm) to lead ion (Pb(2+)), (500-600 ppm) nickel ion (Ni(2+)), (500-800 ppm) copper ion (Cu(2+)), and (600-800 ppm) chromium ion (Cr(3+)) in solid media. Furthermore, biosorption of metals proved considerable removal of heavy metals by isolated metal-resistant strains. Pseudomonas sp. reduced 37% (Pb(2+)), 32% (Ni(2+)), 29% (Cu(2+)), and 32% (Cr(3+)) and was thus found to be most effective, whereas Enterobacter sp. reduced 19% (Pb(2+)), 7% (Ni(2+)), 14% (Cu(2+)), and 21% (Cr(3+)) and was found to be least effective. While average reduction of Pb(2+), Ni(2+), Cu(2+), and Cr(3+) by Citrobacter sp. was found to be 24%, 18%, 23%, and 27%, respectively, among recognized species. This study revealed that Pseudomonas sp. may provide a new microbial community that can be used for enhanced remediation of contaminated environment.

  7. Microbial colonization affects the efficiency of photovoltaic panels in a tropical environment.

    Science.gov (United States)

    Shirakawa, Marcia A; Zilles, Roberto; Mocelin, Andre; Gaylarde, Christine C; Gorbushina, Anna; Heidrich, Gabriele; Giudice, Mauro C; Del Negro, Gilda M B; John, Vanderley M

    2015-07-01

    Sub-aerial biofilm (SAB) development on solar panels was studied in São Paulo. After 6, 12 and 18 months' exposure, photovoltaic panels were covered by increasing proportions of organic matter (42%, 53% and 58%, respectively). Fungi were an important component of these biofilms; very few phototrophs were found. Major microorganisms detected were melanised meristematic ascomycetes and pigmented bacterial genera Arthrobacter and Tetracoccus. While diverse algae, cyanobacteria and bacteria were identified in biofilms at 6 and 12 months, diversity at a later stage was reduced to that typical for SAB: the only fungal group detected in 18 month biofilm was the meristematic Dothideomycetes and the only phototrophs Ulothrix and Chlorella. Photovoltaic modules showed significant power reductions after 6, 12 (both 7%) and 18 (11%) months. The lack of difference in power reduction between 6 and 12 months reflects the dual nature of soiling, which can result from the deposition of particulates as well as from SAB fouling. Although 12-month old SAB demonstrated an almost 10-fold increase in fungal colonization and a higher organic content, the larger non-microbial particles (above 10 μm), which were important for efficiency reduction of lightly-biofilmed panels, were removed by high rainfall just before the 12-month sampling.

  8. Investigation of mineral water springs of Miercurea Ciuc (Csíkszereda) region (Romania) with cultivation-dependent microbiological methods.

    Science.gov (United States)

    Máthé, I; Táncsics, A; György, Eva; Pohner, Zsuzsanna; Vladár, P; Székely, Anna J; Márialigeti, K

    2010-06-01

    Water samples of ten mineral water springs at Miercurea Ciuc (Csíkszereda) region (Romania) were examined during 2005-2006 using cultivation-dependent microbiological methods. The results of standard hygienic bacteriological tests showed that the Hargita Spring had perfect and five other springs had microbiologically acceptable water quality (Zsögöd-, Nagy-borvíz-, Taploca-, Szentegyháza- and Lobogó springs). The water of Borsáros Spring was exceptionable (high germ count, presence of Enterococcus spp.).Both standard bacteriological and molecular microbiological methods indicated that the microbiological water quality of the Szeltersz-, Nádasszék- and Délo springs was not acceptable. Bad water quality resulted from inadequate spring catchment and hygiene (low yield, lack of runoff, negligent usage of the springs, horse manure around the spring).The 16S rRNA gene-based identification of strains isolated on standard meat-peptone medium resulted in the detection of typical aquatic organisms such as Shewanella baltica, Aeromonas spp., Pseudomonas veronii, Psychrobacter sp,. Acinetobacter spp. and allochthonous microbes, like Nocardia, Streptomyces, Bacillus, Microbacterium , and Arthrobacter strains indicating the impact of soil. Other allochthonous microbes, such as Staphylococcus spp., Micrococcus sp., Lactococcus sp., Clostridium butyricum, Yersinia spp., Aerococcus sp., may have originated from animal/human sources.

  9. Production of β-fructofuranosidase and Optimization of Enzymatic Modification Process for Stevioside and Rebaudioside A%β-呋喃果糖苷酶的生产及对甜菊苷和莱鲍迪A苷的酶法改性研究

    Institute of Scientific and Technical Information of China (English)

    李玉强; 邵佩霞; 王永华; 杨博; 宁正祥

    2009-01-01

    Arthrobacter sp. 10137生产一种β-呋喃果糖苷酶(FFase),SDS-PAGE检测纯化后的酶分子质量为48.7 ku左右,酶的比活力为19.81 U/mg.纯酶的最适pH值和温度分别为6.5和40℃,并在pH6~8及40℃以下稳定.纯酶对甜菊普和莱鲍迪A苷改性的最适条件是:酶量为15 U/mL,莱鲍迪A苷和甜菊苷与蔗糖的摩尔比分别为0.000 5∶1和0.001 2∶1,反应时间为15 h.在最适条件下,莱鲍迪A苷和甜菊苷的最大转化率分别为69.4%和72.0%.

  10. Reduced growth of Listeria monocytogenes in two model cheese microcosms is not associated with individual microbial strains.

    Science.gov (United States)

    Imran, Muhammad; Bré, Jean-Michel; Guéguen, Marielle; Vernoux, Jean-Paul; Desmasures, Nathalie

    2013-02-01

    Two model antilisterial microbial communities consisting of two yeasts, two Gram positive and two Gram negative bacteria, and originating from Livarot cheese smear were previously designed. They were used in the present study to analyse the impact of microbial population dynamics on growth of Listeria monocytogenes in cheese microcosm. Specific culture media and PCR primers were developed for simultaneous culture-dependent and real-time PCR quantification of strains belonging to Marinomonas sp., Paenibacillus sp., Staphylococcus equorum, Arthrobacter arilaitensis, Pseudomonas putida, Serratia liquefaciens, Candida natalensis, and Geotrichum candidum, in cheese microcosms. All strains were enumerated after 3, 5, 8 and 14 days at 15 °C. They established well at high counts in all cheese microcosms. Growth dynamics for all strains in presence of L. monocytogenes WSLC 1685 were compared to those of microbial communities obtained by omitting in turn one of the six members of the initial community. The growth of the microbial strains was neither markedly disturbed by Listeria presence nor by the removal of each strain in turn. Furthermore, these communities had a significant reducing effect on growth of L. monocytogenes independently of pH, as confirmed by mathematical modelling. A barrier effect was observed, that could be explained by specific competition for nutrients.

  11. 牛乳中产耐高温蛋白酶嗜冷菌的分离及鉴定研究%Study on Isolation and Identification of Thermotolerant Protease-producing Psychrophiles in Milk

    Institute of Scientific and Technical Information of China (English)

    刘敏; 曹志军; 母智深; 李艳梅

    2009-01-01

    本实验采用单一性底物甲板分离法和Folin法,通过观察蛋白酶水解圈大小和测定该酶活力,从牛乳中共获得10株产耐高温蛋白酶的嗜冷菌.对菌体形态、染色反应、培养性状、生理生化性状进行系统研究.鉴定结果表明,上述10个细菌菌株分别属于气单胞菌属(Aeromonas)、巴斯德氏菌属(Pasteurella)、黄杆菌属(Flavobacterium)、变形菌属(Proteus)、节杆菌属(Arthrobacter)、短杆菌属(Brevibacterium)、微球菌属(Micrococcus)、片球菌属(Pediococcus)、乳球菌属(Lactococcus)和明串球菌属(Trichococcus).

  12. Screening and Identification of Bacteria Decomposing Maize Straw under Low Temperature and Their Effect Test%玉米秸秆低温快速腐熟菌的筛选、鉴定及效果试验

    Institute of Scientific and Technical Information of China (English)

    姚良同; 丁延芹; 刘尧; 陈一然; 杜秉海; 李俊

    2008-01-01

    本试验模拟腐烂秸秆的环境,以玉米秸秆的浸出汁为培养基,在5℃低温条件下,用双层平板和穿刺法结合筛选到4株快速腐熟秸秆的兼性厌氧菌.依据形态、生理生化特征以及16S rDNA序列分析结果,将YO-1、YO-2鉴定为赫氏埃希菌(Escherichia hermannii),YO-B鉴定为霍氏肠杆菌(Enterobacter hormaechei),YO-H鉴定为节杆菌(Arthrobacter arilaiti).进一步通过发酵试验,验证了4株菌对玉米秸秆的降解效果,其中YO-1、YO-H对玉米秸秆降解能力好于YO-2和YO-B.

  13. [Characterization of growth-promoting rhizobacteria in Eucalyptus nitens seedlings].

    Science.gov (United States)

    Angulo, Violeta C; Sanfuentes, Eugenio A; Rodríguez, Francisco; Sossa, Katherine E

    2014-01-01

    Rhizospheric and endophytic bacteria were isolated from the rizosphere and root tissue of Eucalyptus nitens. The objective of this work was to evaluate their capacity to promote growth in seedlings of the same species under greenhouse conditions. The isolates that improved seedling growth were identified and characterized by their capacity to produce indoleacetic acid (IAA), solubilize phosphates and increase 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. One hundred and five morphologically different strains were isolated, 15 of which promoted E. nitens seedling growth, significantly increasing the height (50%), root length (45%) as well as the aerial and root dry weight (142% and 135% respectively) of the plants. Bacteria belonged to the genus Arthrobacter, Lysinibacillus, Rahnella and Bacillus. Isolates A. phenanthrenivorans 21 and B. cereus 113 improved 3.15 times the emergence of E. nitens after 12 days, compared to control samples. Among isolated R. aquatilis, 78 showed the highest production of IAA (97.5±2.87 μg/ml) in the presence of tryptophan and the highest solubilizer index (2.4) for phosphorus, while B. amyloliquefaciens 60 isolate was positive for ACC deaminase activity. Our results reveal the potential of the studied rhizobacteria as promoters of emergence and seedling growth of E. nitens, and their possible use as PGPR inoculants, since they have more than one mechanism associated with plant growth promotion.

  14. Growth kinetics of microorganisms isolated from Alaskan soil and permafrost in solid media frozen down to -35 degrees C.

    Science.gov (United States)

    Panikov, Nicolai S; Sizova, Maria V

    2007-02-01

    We developed a procedure to culture microorganisms below freezing point on solid media (cellulose powder or plastic film) with ethanol as the sole carbon source without using artificial antifreezes. Enrichment from soil and permafrost obtained on such frozen solid media contained mainly fungi, and further purification resulted in isolation of basidiomycetous yeasts of the genera Mrakia and Leucosporidium as well as ascomycetous fungi of the genus Geomyces. Contrary to solid frozen media, the enrichment of liquid nutrient solutions at 0 degrees C or supercooled solutions stabilized by glycerol at -1 to -5 degrees C led to the isolation of bacteria representing the genera Polaromonas, Pseudomonas and Arthrobacter. The growth of fungi on ethanol-microcrystalline cellulose media at -8 degrees C was exponential with generation times of 4.6-34 days, while bacteria displayed a linear or progressively declining curvilinear dynamic. At -17 to -0 degrees C the growth of isolates and entire soil community on 14C-ethanol was continuous and characterized by yields of 0.27-0.52 g cell C (g of C-substrate)(-1), similar to growth above the freezing point. The 'state of maintenance,' implying measurable catabolic activity of non-growing cells, was not confirmed. Below -18 to -35 degrees C, the isolated organisms were able to grow only transiently for 3 weeks after cooling with measurable respiratory and biosynthetic (14CO2 uptake) activity. Then metabolic activity declined to zero, and microorganisms entered a state of reversible dormancy.

  15. Isolation and characterization of a diverse group of phenylacetic acid degrading microorganisms from pristine soil.

    Science.gov (United States)

    O'Connor, Kevin E; O'Leary, Niall P; Marchesi, Julian R; Dobson, Alan D W; Duetz, Wouter

    2005-11-01

    A diverse range of microorganisms capable of growth on phenylacetic acid as the sole source of carbon and energy were isolated from soil. Sixty six different isolates were identified and grouped according to 16S rRNA gene RFLP analysis. Subsequent sequencing of 16S rDNA from selected strains allowed further characterization of the phenylacetic acid degrading population isolated from soil. Nearly half (30) of the isolates are Bacillus species while the rest of the isolates are strains from a variety of genera namely, Arthrobacter, Pseudomonas, Rhodococcus, Acinetobacter, Enterobacter, Flavobacterium, and Paenibacillus. Sixty-one of the sixty-six strains reproducibly grew in defined minimal liquid culture medium (E2). All strains isolated grew when at least one hydroxylated derivative of phenylacetic acid was supplied as the carbon source, while 59 out of the 61 strains tested, accumulated ortho-hydroxyphenylacetic acid in the assay buffer; when pulsed with phenylacetic acid. Oxygen consumption experiments failed to indicate a clear link between phenylacetic acid and hydroxy-substituted phenylacetic acid in isolates from a broad range of genera.

  16. Isolation and characterization of novel atrazine-degrading microorganisms from an agricultural soil.

    Science.gov (United States)

    Vibber, Laurel L; Pressler, Michael J; Colores, Gregory M

    2007-06-01

    Six previously undescribed microorganisms capable of atrazine degradation were isolated from an agricultural soil that received repeated exposures of the commonly used herbicides atrazine and acetochlor. These isolates are all Gram-positive and group with microorganisms in the genera Nocardioides and Arthrobacter, both of which contain previously described atrazine degraders. All six isolates were capable of utilizing atrazine as a sole nitrogen source when provided with glucose as a separate carbon source. Under the culture conditions used, none of the isolates could utilize atrazine as the sole carbon and nitrogen source. We used several polymerase-chain-reaction-based assays to screen for the presence of a number of atrazine-degrading genes and verified their identity through sequencing. All six isolates contain trzN and atzC, two well-characterized genes involved in the conversion of atrazine to cyanuric acid. An additional atrazine-degrading gene, atzB, was detected in one of the isolates as well, yet none appeared to contain atzA, a commonly encountered gene in atrazine impacted soils and atrazine-degrading isolates. Interestingly, the deoxyribonucleic acid sequences of trzN and atzC were all identical, implying that their presence may be the result of horizontal gene transfer among these isolates.

  17. Actinobacterial diversity in limestone deposit sites in Hundung, Manipur (India and their antimicrobial activities

    Directory of Open Access Journals (Sweden)

    Salam eNimaichand

    2015-05-01

    Full Text Available Studies on actinobacterial diversity in limestone habitats are scarce. This paper reports profiling of actinobacteria isolated from Hundung limestone samples in Manipur, India using ARDRA as the molecular tool for preliminary classification. A total of 137 actinobacteria were clustered into 31 phylotypic groups based on the ARDRA pattern generated and representative of each group was subjected to 16S rRNA gene sequencing. Generic diversity of the limestone isolates consisted of Streptomyces (15 phylotypic groups, Micromonospora (4, Amycolatopsis (3, Arthrobacter (3, Kitasatospora (2, Janibacter (1, Nocardia (1, Pseudonocardia (1 and Rhodococcus (1. Considering the antimicrobial potential of these actinobacteria, 19 showed antimicrobial activities against at least one of the bacterial and candidal test pathogens, while 45 exhibit biocontrol activities against at least one of the rice fungal pathogens. Out of the 137 actinobacterial isolates, 118 were found to have at least one of the three biosynthetic gene clusters (PKS-I, PKS-II, NRPS. The results indicate that 86% of the strains isolated from Hundung limestone deposit sites possessed biosynthetic gene clusters of which 40% exhibited antimicrobial activities. It can, therefore, be concluded that limestone habitat is a promising source for search of novel secondary metabolites.

  18. Actinobacterial diversity in limestone deposit sites in Hundung, Manipur (India) and their antimicrobial activities.

    Science.gov (United States)

    Nimaichand, Salam; Devi, Asem Mipeshwaree; Tamreihao, K; Ningthoujam, Debananda S; Li, Wen-Jun

    2015-01-01

    Studies on actinobacterial diversity in limestone habitats are scarce. This paper reports profiling of actinobacteria isolated from Hundung limestone samples in Manipur, India using ARDRA as the molecular tool for preliminary classification. A total of 137 actinobacteria were clustered into 31 phylotypic groups based on the ARDRA pattern generated and representative of each group was subjected to 16S rRNA gene sequencing. Generic diversity of the limestone isolates consisted of Streptomyces (15 phylotypic groups), Micromonospora (4), Amycolatopsis (3), Arthrobacter (3), Kitasatospora (2), Janibacter (1), Nocardia (1), Pseudonocardia (1) and Rhodococcus (1). Considering the antimicrobial potential of these actinobacteria, 19 showed antimicrobial activities against at least one of the bacterial and candidal test pathogens, while 45 exhibit biocontrol activities against at least one of the rice fungal pathogens. Out of the 137 actinobacterial isolates, 118 were found to have at least one of the three biosynthetic gene clusters (PKS-I, PKS-II, NRPS). The results indicate that 86% of the strains isolated from Hundung limestone deposit sites possessed biosynthetic gene clusters of which 40% exhibited antimicrobial activities. It can, therefore, be concluded that limestone habitat is a promising source for search of novel secondary metabolites.

  19. Microbial community in high arsenic shallow groundwater aquifers in Hetao Basin of Inner Mongolia, China.

    Science.gov (United States)

    Li, Ping; Wang, Yanhong; Dai, Xinyue; Zhang, Rui; Jiang, Zhou; Jiang, Dawei; Wang, Shang; Jiang, Hongchen; Wang, Yanxin; Dong, Hailiang

    2015-01-01

    A survey was carried out on the microbial community of 20 groundwater samples (4 low and 16 high arsenic groundwater) and 19 sediments from three boreholes (two high arsenic and one low arsenic boreholes) in a high arsenic groundwater system located in Hetao Basin, Inner Mongolia, using the 454 pyrosequencing approach. A total of 233,704 sequence reads were obtained and classified into 12-267 operational taxonomic units (OTUs). Groundwater and sediment samples were divided into low and high arsenic groups based on measured geochemical parameters and microbial communities, by hierarchical clustering and principal coordinates analysis. Richness and diversity of the microbial communities in high arsenic sediments are higher than those in high arsenic groundwater. Microbial community structure was significantly different either between low and high arsenic samples or between groundwater and sediments. Acinetobacter, Pseudomonas, Psychrobacter and Alishewanella were the top four genera in high arsenic groundwater, while Thiobacillus, Pseudomonas, Hydrogenophaga, Enterobacteriaceae, Sulfuricurvum and Arthrobacter dominated high arsenic sediments. Archaeal sequences in high arsenic groundwater were mostly related to methanogens. Biota-environment matching and co-inertia analyses showed that arsenic, total organic carbon, SO4(2-), SO4(2-)/total sulfur ratio, and Fe(2+) were important environmental factors shaping the observed microbial communities. The results of this study expand our current understanding of microbial ecology in high arsenic groundwater aquifers and emphasize the potential importance of microbes in arsenic transformation in the Hetao Basin, Inner Mongolia.

  20. Assessment of the ecological security of immobilized enzyme remediation process with biological indicators of soil health.

    Science.gov (United States)

    Zhang, Ying; Dong, Xiaonan; Jiang, Zhao; Cao, Bo; Ge, Shijie; Hu, Miao

    2013-08-01

    This study used the enzymes extracted from an atrazine-degrading strain, Arthrobacter sp. DNS10, which had been immobilized by sodium alginate to rehabilitate atrazine-polluted soil. Meanwhile, a range of biological indices were selected to assess the ecological health of contaminated soils and the ecological security of this bioremediation method. The results showed that there was no atrazine detected in soil samples after 28 days in EN+AT (the soil containing atrazine and immobilized enzyme) treatment. However, the residual atrazine concentration of the sample in AT (the soil containing atrazine only) treatment was about 5.02 ± 0.93 mg kg(-1). These results suggest that the immobilized enzyme exhibits an excellent ability in atrazine degradation. Furthermore, the immobilized enzyme could relieve soil microbial biomass carbon and soil microbial respiration intensity to 772.33 ± 34.93 mg C kg(-1) and 5.01 ± 0.17 mg CO(2) g(-1) soil h(-1), respectively. The results of the polymerase chain reaction-degeneration gradient gel electrophoresis experiment indicated that the immobilized enzyme also could make the Shannon-Wiener index and evenness index of the soil sample increase from 1.02 and 0.74 to 1.51 and 0.84, respectively. These results indicated that the immobilized enzymes not only could relieve the impact from atrazine on the soil, but also revealed that the immobilized enzymes did no significant harm on the soil ecological health.

  1. Weathering-associated bacteria from the Damma glacier forefield: physiological capabilities and impact on granite dissolution.

    Science.gov (United States)

    Frey, Beat; Rieder, Stefan R; Brunner, Ivano; Plötze, Michael; Koetzsch, Stefan; Lapanje, Ales; Brandl, Helmut; Furrer, Gerhard

    2010-07-01

    Several bacterial strains isolated from granitic rock material in front of the Damma glacier (Central Swiss Alps) were shown (i) to grow in the presence of granite powder and a glucose-NH(4)Cl minimal medium without additional macro- or micronutrients and (ii) to produce weathering-associated agents. In particular, four bacterial isolates (one isolate each of Arthrobacter sp., Janthinobacterium sp., Leifsonia sp., and Polaromonas sp.) were weathering associated. In comparison to what was observed in abiotic experiments, the presence of these strains caused a significant increase of granite dissolution (as measured by the release of Fe, Ca, K, Mg, and Mn). These most promising weathering-associated bacterial species exhibited four main features rendering them more efficient in mineral dissolution than the other investigated isolates: (i) a major part of their bacterial cells was attached to the granite surfaces and not suspended in solution, (ii) they secreted the largest amounts of oxalic acid, (iii) they lowered the pH of the solution, and (iv) they formed significant amounts of HCN. As far as we know, this is the first report showing that the combined action of oxalic acid and HCN appears to be associated with enhanced elemental release from granite, in particular of Fe. This suggests that extensive microbial colonization of the granite surfaces could play a crucial role in the initial soil formation in previously glaciated mountain areas.

  2. Novel bacterial strains for the removal of microcystins from drinking water.

    Science.gov (United States)

    Lawton, L A; Welgamage, A; Manage, P M; Edwards, C

    2011-01-01

    Microcystins (MC) and nodularin (NOD) are common contaminants of drinking water around the world and due to their significant health impact it is important to explore suitable approaches for their removal. Unfortunately, these toxins are not always removed by conventional water treatments. One of the most exciting areas that hold promise for a successful and cost effective solution is bioremediation of microcystins. Recent work resulted in successful isolation and characterisation of 10 novel bacterial strains (Rhodococcus sp., Arthrobacter spp. and Brevibacterium sp.) capable of metabolizing microcystin-LR (MC-LR) in a Biolog MT2 assay. The work presented here aims to further investigate and evaluate the metabolism and the degradation of multiple microcystins (MC-LR, MC-LF, MC-LY, MC-LW and MC-RR) and nodularin by the bacterial isolates. A total of five bacterial isolates representing the three genera were evaluated using Biolog MT2 assay with a range of MCs where they all demonstrated an overall metabolism on all MCs and NOD. Subsequently, the results were confirmed by observing the degradation of the range of toxins in a separate batch experiment.

  3. Crude oil treatment leads to shift of bacterial communities in soils from the deep active layer and upper permafrost along the China-Russia Crude Oil Pipeline route.

    Directory of Open Access Journals (Sweden)

    Sizhong Yang

    Full Text Available The buried China-Russia Crude Oil Pipeline (CRCOP across the permafrost-associated cold ecosystem in northeastern China carries a risk of contamination to the deep active layers and upper permafrost in case of accidental rupture of the embedded pipeline or migration of oil spills. As many soil microbes are capable of degrading petroleum, knowledge about the intrinsic degraders and the microbial dynamics in the deep subsurface could extend our understanding of the application of in-situ bioremediation. In this study, an experiment was conducted to investigate the bacterial communities in response to simulated contamination to deep soil samples by using 454 pyrosequencing amplicons. The result showed that bacterial diversity was reduced after 8-weeks contamination. A shift in bacterial community composition was apparent in crude oil-amended soils with Proteobacteria (esp. α-subdivision being the dominant phylum, together with Actinobacteria and Firmicutes. The contamination led to enrichment of indigenous bacterial taxa like Novosphingobium, Sphingobium, Caulobacter, Phenylobacterium, Alicylobacillus and Arthrobacter, which are generally capable of degrading polycyclic aromatic hydrocarbons (PAHs. The community shift highlighted the resilience of PAH degraders and their potential for in-situ degradation of crude oil under favorable conditions in the deep soils.

  4. Isolation and Characterization of Four Gram-PositiveNickel-Tolerant Microorganisms from Contaminated Riparian Sediments

    Energy Technology Data Exchange (ETDEWEB)

    Van Nostrand, Joy D.; Khijniak, Tatiana V.; Gentry, Terry J.; Novak, Michelle T.; Sowder, Andrew G.; Zhou, Jizhong Z.; Bertsch, PaulM.; Morris, Pamela J.

    2006-08-30

    Microbial communities from riparian sediments contaminatedwith high levels of Ni and U were examined for metal-tolerantmicroorganisms. Isolation of four aerobic Ni-tolerant, Gram-positiveheterotrophic bacteria indicated selection pressure from Ni. Theseisolates were identified as Arthrobacter oxydans NR-1, Streptomycesgalbus NR-2, Streptomyces aureofaciens NR-3, and Kitasatosporacystarginea NR-4 based on partial 16S rDNA sequences. A functional genemicroarray containing gene probes for functions associated withbiogeochemical cycling, metal homeostasis, and organic contaminantdegradation showed little overlap among the four isolates. Fifteen of thegenes were detected in all four isolates with only two of these relatedto metal resistance, specifically to tellurium. Each of the four isolatesalso displayed resistance to at least one of six antibiotics tested, withresistance to kanamycin, gentamycin, and ciprofloxacin observed in atleast two of the isolates. Further characterization of S. aureofaciensNR-3 and K. cystarginea NR-4 demonstrated that both isolates expressed Nitolerance constitutively. In addition, both were able to grow in higherconcentrations of Ni at pH 6 as compared to pH 7 (42.6 and 8.5 mM Ni atpH 6 and 7, respectively). Tolerance to Cd, Co, and Zn was also examinedin these two isolates; a similar pH-dependent metal tolerance wasobserved when grown with Co and Zn. Neither isolate was tolerant to Cd.These findings suggest that Ni is exerting a selection pressure at thissite for metal-resistant actinomycetes.

  5. Bioaccumulation of uranium and thorium from the solution containing both elements using various microorganisms

    Energy Technology Data Exchange (ETDEWEB)

    Tsuruta, T. [Department of Applied Chemistry, Tohwa University, 1-1-1 Chikushigaoka, Fukuoka 815-8510 (Japan)]. E-mail: ttsuruta@tohwa-u.ac.jp

    2006-02-09

    The effects of proton, thorium and uranium on the bioaccumulation of thorium and uranium from the solution (pH 3.5) containing uranium and thorium using Streptomyces levoris cells were examined. The amount of thorium accumulated using the cells decreased by the pre-contact between the cells and the solution (pH 3.5) containing no metals, whereas that of uranium was almost unaffected by the treatment. The amount of thorium was almost unaffected by the existence of uranium. On the other hand, the amount of uranium accumulated was strongly affected by the thorium, especially thorium addition after uranium accumulation. The decrease of uranium accumulated by the addition of thorium after the accumulation of uranium was higher than that from the solution containing both elements. Therefore, the contribution of uranium-thorium exchange reaction was higher than that of competition reaction. Accordingly, proton-uranium-thorium exchange reaction was occurred in the accumulation of thorium from the solution containing thorium and uranium. The gram-positive bacteria, such as Micrococcus luteus, Arthrobacter nicotianae, Bacillus subtilis and B. megaterium, has a much higher separation factor as thorium/uranium than that of actinomycetes. These gram-positive bacterial strains can be used for the accumulation of thorium from the solution containing uranium and thorium.

  6. Glycinebetaine enhances the tolerance of tomato plants to high temperature during germination of seeds and growth of seedlings.

    Science.gov (United States)

    Li, Shufen; Li, Feng; Wang, Jianwei; Zhang, Wen; Meng, Qingwei; Chen, Tony H H; Murata, Norio; Yang, Xinghong

    2011-11-01

    Tomato (Lycopersicon esculentum cv. 'Moneymaker') was transformed with a codA gene, from Arthrobacter globiformis, for choline oxidase that had been modified to allow targeting to both chloroplasts and the cytosol. Glycinebetaine (GB) accumulated in seeds of transformed plants up to 1 µmol g(-1) dry weight (DW), while no detectable GB was found in wild-type (WT) seeds. The codA-transgenic seeds germinated faster and at higher frequency than WT seeds with high temperature treatment. After heat stress, levels of expression of a mitochondrial small heat-shock protein (MT-sHSP), heat-shock protein 70 (HSP70) and heat-shock cognate 70 (HSC70) were higher in transgenic seeds than in WT seeds during heat stress, and the accumulation of HSP70 was more prominent in codA-transgenic seeds than in WT seeds. Addition of GB to the germination medium or imbibition of seeds in a solution of GB enhanced the tolerance of WT seeds to high temperatures. WT seeds treated with exogenous GB also expressed heat-shock genes at elevated levels and accumulated more HSP70 than controls. Our results suggest that GB, either applied exogenously or accumulated in vivo in codA-transgenic seeds, enhanced the expression of heat-shock genes in and improved the tolerance to high temperature of tomato seeds during germination.

  7. Diversity of Endophytic Bacteria Isolated from Moso Bamboo%毛竹内生细菌种群多样性分析

    Institute of Scientific and Technical Information of China (English)

    刘芳; 袁宗胜; 张国防; 陈威

    2014-01-01

    采用稀释平板法从福建武夷山毛竹根、鞭、杆、叶部组织中分离到27株内生细菌,利用细菌菌落表征性状和16S rDNA 序列对这些菌株进行了多样性分析。结果表明,分离出27株内生细菌分属于14属18种,其中以节细菌属 Arthrobacter、芽孢杆菌属 Bacillus 、苍白杆菌属 Ochrobactrum 和葡萄球菌属 Staphylococcus 为主要菌群。%Twenty-seven endophytic bacteria were isolated from the roots,rhizome,stems and leaves of moso bamboo by means of grinding separation.A preliminary determination on the diversity of the strains was made based on their phenotypic characteristics as well as the molecular classification using partial 16S rDNA sequences.The results showed that the isolated bacteria could be classified into 14 genera and 18 species,with Arthrobacter, Bacillus ,Ochrobactrum and Staphylococcus being the most predominant.

  8. Coordinated Cluster/Double Star observations of dayside flux transfer events on 6 April 2004

    Institute of Scientific and Technical Information of China (English)

    WANG Jue; WANG XiaoGang; LIU ZhenXing; PU ZuYin; ZHOU XuZhi; ZHANG XianGuo; Malcom W. DUNLOP; FU SuiYan; XIE Lun; ZONG QiuGang; XIAO ChiJie

    2008-01-01

    With the Double Star Program TCl in the equatorial orbit and Cluster tetrahedron in the high latitude polar orbit, a conjunct observation of FTEs on the dayside magnetopause (MP) on April 6, 2004 is presented in this study. The FTEs observed by TC1 at low latitudes are characterized to be generated in the subeolar region and the obtained flux tube axes orientate along the predicted low latitude component magnetic reconnection X-line, indicating that these FTEa were more likely to be generated through multiple X-line reconnection or single X-line bursty reconnec-tion. During the same period, Cluster also encountered a series of magnetosheath FTEs with their axes pointing roughly along the interplanetary magnetic field. At last, the global FTE configuration is obtained from observations in different loca-tions, which is in good agreement with the "elbow shape" model.

  9. SYNTHESIS AND MESOMORPHIC PROPERTIES OF PALLADIUM CHELATES OF LIQUID CRYSTAL POLYSILOXANE WITH β-DIKETONE-BASED SIDE CHAINS

    Institute of Scientific and Technical Information of China (English)

    ZHOU Zhaohui; DAI Daorong; ZHANG Rongben

    1992-01-01

    A new type of palladium chelate of β-diketone-based side chain liquid crystal polysiloxane(Pd-DKLCP) has been synthesized by chelation reaction of palladium dichloride with polymeric ligand, β-diketone polysiloxane (DKLCP), using THF as solvent at R .T.. The Pd-chelation results in greatly increasing the phase transition temperature TK and the enthalpy change AHK from crystal to liquid crystal state and making the temperature range of LC state AT (A T=Tc1- TK) widened.All these chelates Pd-DKLCP's do not show TCl until decomposition at 205 ℃. It is noteworthy that the Pd-chelation can exert more positive effect on the mesomorphic behaviour of the polymer ligand than the counterpart Cu-DKLCP does. It is probable due to the bigger size of disc-like mesogen formed from β-diketone and Pd +2 ion with 4d orbital.

  10. The crystal structure and superconducting properties of monatomic bromine.

    Science.gov (United States)

    Duan, Defang; Meng, Xing; Tian, Fubo; Chen, Changbo; Wang, Liancheng; Ma, Yanming; Cui, Tian; Liu, Bingbing; He, Zhi; Zou, Guangtian

    2010-01-13

    The crystal structure and superconducting properties of monatomic bromine under high pressure have been studied by first-principles calculations. We have found the following phase transition sequence with increasing pressure: from body-centered orthorhombic (bco, phase II) to body-centered tetragonal structure (bct, phase III) at 126 GPa, then to face-centered cubic structure (fcc, phase IV) at 157 GPa, which is stable at least up to 300 GPa. The calculated superconducting critical temperature T(c) = 1.46 K at 100 GPa is consistent with the experimental value of 1.5 K. In addition, our results of T(c) decrease with increasing pressure in all the monatomic phases of bromine, similar to monatomic iodine. Further calculations show that the decrease of λ with pressure in phase IV is mainly attributed to the weakening of the 'soft' vibrational mode caused by pressure.

  11. Specific heat of the non-centrosymmetric superconductor Re3W

    Institute of Scientific and Technical Information of China (English)

    Yan Jing; Shan Lei; Luo Qiang; Wang Wei-Hua; Wen Hai-Hu

    2009-01-01

    The alloys of non-centrosymmetric superconductor, Re3W, which were reported to have an α-Mn structure [P.Greenfield and P. A. Beck, J. Metals, N. Y. 8, 265 (1959)] with Tc = 9 K, are prepared by arc melting. The values of ac susceptibility and the low-temperature specific heat of these alloys are measured. It is found that there are two superconducting phases coexisting in the samples with Tc1 ≈ 9 K and Tc2≈7 K, which are both non-centrosymmetric in structure as reported previously. By analysing the specific heat data measured in various magnetic fields down to a temperature of 1.8 K, we find that the absence of the inversion symmetry does not lead to an obvious deviation from an s-wave pairing symmetry in Re3W.

  12. New Record of Two Marine Ciliates (Ciliophora: Spirotrichea in South Korea

    Directory of Open Access Journals (Sweden)

    Kang-San Kim

    2013-04-01

    Full Text Available Two marine hypotrichous ciliates, Anteholosticha petzi and Ponturostyla enigmatica, were collected from the Yellow Sea and the Korea Strait, respectively, and described using live observation and protargol-impregnated specimens. Furthermore, the nuclear small subunit ribosomal RNA gene of each was sequenced and compared to previously annotated sequences retrieved from the GenBank. Anteholosticha petzi is characterized by 3 frontal cirri (FC, 2 frontoterminal cirri (FTC, 8-12 transverse cirri (TC, 1 buccal cirrus (BC, 9-12 midventral pairs (MP, 3 bipolar dorsal kineties (DK, and 3 types of colorless cortical granules. Ponturostyla enigmatica is characterized by 8 FC, 5 ventral cirri (VC, 5-7 TC, 6-7 marginal rows (MR on each side, 4 complete and 2-3 partial DK, and greenish cortical granules. This is the first identification and description of these 2 species, A. petzi and P. enigmatica, in South Korea.

  13. Sleeping Beauty transposase structure allows rational design of hyperactive variants for genetic engineering

    Science.gov (United States)

    Voigt, Franka; Wiedemann, Lisa; Zuliani, Cecilia; Querques, Irma; Sebe, Attila; Mátés, Lajos; Izsvák, Zsuzsanna; Ivics, Zoltán; Barabas, Orsolya

    2016-01-01

    Sleeping Beauty (SB) is a prominent Tc1/mariner superfamily DNA transposon that provides a popular genome engineering tool in a broad range of organisms. It is mobilized by a transposase enzyme that catalyses DNA cleavage and integration at short specific sequences at the transposon ends. To facilitate SB's applications, here we determine the crystal structure of the transposase catalytic domain and use it to model the SB transposase/transposon end/target DNA complex. Together with biochemical and cell-based transposition assays, our structure reveals mechanistic insights into SB transposition and rationalizes previous hyperactive transposase mutations. Moreover, our data enables us to design two additional hyperactive transposase variants. Our work provides a useful resource and proof-of-concept for structure-based engineering of tailored SB transposases. PMID:27025571

  14. Reentrant ferromagnetism and its stability in magnetic semiconductors

    Science.gov (United States)

    Zutic, Igor; Erwin, Steven; Petukhov, Andre

    2007-03-01

    The magnetization of a ferromagnetic material normally decays monotonically with increasing temperature. Here we demonstrate theoretically the possibility of quite different behavior: reentrant ferromagnetism in semiconductors [1]. Reentrant magnetism can arise in semiconductors because as the temperature rises, the resulting higher concentration of thermally excited carriers can enhance the exchange coupling between magnetic impurities. This opens the possibility of materials exhibiting a transition from the low-temperature paramagnetic phase, in which carriers are frozen out, to a ferromagnetic phase at higher temperature. Thus, in the absence of other ferromagnetic mechanisms there will be two critical temperatures, Tc1 Zuti'c, A. Petukhov, S. C. Erwin, preprint. [2] I. Zuti'c, J. Fabian, S. C. Erwin, Phys. Rev. Lett. 97, 026602 (2006).

  15. Silicon Heterojunction Solar Cells: Temperature Impact on Passivation and Performance

    Energy Technology Data Exchange (ETDEWEB)

    Seif, J.; Krishnamani, G.; Demaurex, B.; Martin de Nicholas, S.; Holm, N.; Ballif, C.; De Wolf, S.

    2015-03-23

    Photovoltaic devices deployed in the field can reach operation temperatures (T) as high as 90 °C [1]. Hence, their temperature coefficients (TC1) are of great practical importance as they determine their energy yield. In this study we concentrate on T-related lifetime variations of amorphous/crystalline interfaces and study their influence on the TCs of the individual solar cell parameters. We find that both the open-circuit voltage (Voc) and fill factor (FF) are influenced by these lifetime variations. However, this is only a minor effect compared to the dominant increase of the intrinsic carrier density and the related increase in dark saturation current density. Additionally, in this paper we will show that the TCVoc does not depend solely on the initial value of the Voc [2, 3], but that the structure of the device has to be considered as well.

  16. Altering the balance between immune activation versus regulation in the skin to promote CD8+ T-cell activity within epithelial cancers

    DEFF Research Database (Denmark)

    Bridge, Jennifer A.; Overgaard, Nana Haahr; Steptoe, Raymond;

    to rejection of ~50% of grafts. To confirm a role for T-reg, E7-grafted T-reg-deficient Rag1-/- mice received purified donor CD8 T-cells from E7-vaccinated WT mice. FACS staining of Rag1-/- lymph nodes 30 days post CD8+ T-cell transfer confirmed the absence of classical CD4+FoxP3+ Treg, however the E7 grafts...... grafts are not rejected when mice are immunised with E7 peptide in combination with Quil A- or CASAC-based adjuvants. This is despite a substantial increase in E7 peptide/H-2Db pentamer staining in the blood, and marked killing of E7-peptide expressing TC-1 cells when injected i.v., confirming that CD8 T...

  17. Superconductivity and low temperature electrical transport in B-doped CVD nanocrystalline diamond

    Directory of Open Access Journals (Sweden)

    Milos Nesladek, Jiri J. Mares, Dominique Tromson, Christine Mer, Philippe Bergonzo, Pavel Hubik and Jozef Kristofik

    2006-01-01

    Full Text Available In this work, we report on superconductivity (SC found in thin B-doped nanocrystalline diamond films, prepared by the PE-CVD technique. The thickness of the films varies from about 100 to 400 nm, the films are grown on low-alkaline glass at substrate temperatures of about 500–700 °C. The SIMS measurements show that films can be heavily doped with boron in concentrations in the range of 3×1021 cm−3. The Raman spectra show Fano resonances, confirming the substitutional B-incorporation. The low temperature magnetotransport measurements reveal a positive magnetoresistance. The SC transition is observed at about Tc=1.66 K. A simple theory exploiting the concept of weak localization accounting for this transition is proposed.

  18. Nonlinear Evolution of the Kelvin-Helmholtz Instability in the High Latitude Ionosphere.

    Science.gov (United States)

    1987-12-21

    FEDDER, P. SATYANARAYANA ,*% S.T. ZALESAK, AND J.D. HUBA It/ Geophysical and Plasma Dynamics Branch Plasma Physics Division *Science Applications...unlimited F 0, 88 1 SECUITY [AS-(ATON CP T~c, *1, Sa EC O URITY C A Ti PACETP V V UNCLASSIFIED) 2a SFiRJ’Y lAd(AONAuJIwwI TY I) O ,R 04 (AJA A-4 - 2b...8217 0 IT0R % C 0(, V . 1A’ I*. R, t, *" VS NRt. Memorandum Report 6043 ba NAME OF PIPF()RPM NC OR6AN:ZATiON 1,-, oFf (F SYVBIX ’da 4V A( OF M IR ’,’ I)P4

  19. Investigation of scaling laws by critical neutron scattering from beta-brass

    DEFF Research Database (Denmark)

    Als-Nielsen, Jens Aage

    1969-01-01

    Using a Cu65-Zn β-brass crystal, the critical scattering of neutrons has been studied, both above and below T c. The staggered susceptibilities χ vary as C+(T/Tc-1)-γ and C-(1-T/Tc)-γ ', respectively. It is found that γ=γ' within an accuracy of 3%, in agreement with the scaling hypothesis of static...... critical phenomena; and that C+/C-=5.46±0.05, in excellent agreement with the recent parametric representation theory of Schofield and in fair agreement with the results of series expansions by Essam and Hunter. For fixed q, a flat maximum is observed in the wave-vector-dependent susceptibility χ(q, T...

  20. Stevioside counteracts the alpha-cell hypersecretion caused by long-term palmitate exposure

    DEFF Research Database (Denmark)

    Hong, J; Chen, L; Jeppesen, P B;

    2006-01-01

    Long-term exposure to fatty acids impairs beta-cell function in type 2 diabetes, but little is known about the chronic effects of fatty acids on alpha-cells. We therefore studied the prolonged impact of palmitate on alpha-cell function and on the expression of genes related to fuel metabolism. We......-activated receptor-gamma, and stearoyl-CoA desaturase gene expressions in the presence of palmitate (Pacids leads to a hypersecretion of glucagon and an accumulation of TG content in clonal alpha-TC1-6 cells. Stevioside was able to counteract the alpha......-cell hypersecretion caused by palmitate and enhanced the expression of genes involved in fatty acid metabolism. This indicates that stevioside may be a promising antidiabetic agent in treatment of type 2 diabetes....

  1. The observations of high energy electrons and associated waves by DSP satellites during substorm

    Energy Technology Data Exchange (ETDEWEB)

    Cao Jinbin [Key Laboratory of Space Weather, Center for Space Science and Applied Research, Chinese Academy of Sciences, Beijing, 100080 (China); Yang Junying; Yan Chunxiao [Key Laboratory of Space Weather, Center for Space Science and Applied Research, Chinese Academy of Sciences, Beijing, 100080 (China); Graduate School of the Chinese Academy of Sciences, Beijing 100039 (China); Li Liyuan [Key Laboratory of Space Weather, Center for Space Science and Applied Research, Chinese Academy of Sciences, Beijing, 100080 (China)

    2007-04-15

    Double Star Program (DSP) is a CNSA-ESA cooperation mission. DSP consists of two satellites: Equatorial satellite (TC-1) and Polar satellite (TC-2). This paper presents important observations of long duration loss of high energetic electrons and relevant waves in the recovery phase of substorm, that are made by LFEW and HEED of the polar satellite of DSP (TC-2). The HEED of TC-2 observed a loss event of high energetic electrons which lasted about 4 minute. At the same time, the LFEW of TC-2 observed a wave burst. The wave burst began 1 minute earlier than the loss event of energetic electrons. The frequency of waves ranges form 600 Hz to over 10 kHz. The analyses of wave characteristics indicate that the wave was whistler-mode. Thus it is very possible that the loss of high energy electrons was caused by wave activities through wave-particle interactions.

  2. Summary of CNCOSPAR Activities 2002-2004

    Institute of Scientific and Technical Information of China (English)

    Secretariat of Chinese Committee on Space Research

    2004-01-01

    @@ 1 In Brief In this report, we summarize the major activities of CNCOSPAR from the year 2002to 2004. During this period, many things happened such as Beijing won the 2006COSPAR scientific assembly, the first Chinese Committee of COSPAR handed over its responsibility to the second committee, etc. During this period, the space science activities developed also very fast. China has sent its first scientific satellite, the first satellite TC-1 of the Double Star Program, into space. China also has a major break through in the manned space flight by a very successful mission of Shenzhou manned space flight. On board of this spacecraft, is the first Chinese astronaut Mr. Liwei Yang. This made China the third country in the world who has the ability that the launch manned space missions independently.

  3. Hydraulic Resistance and Liberation of Air in Aviation Kerosene Flow Through Diaphragms at Low Pressure

    Science.gov (United States)

    Kitanin, É. L.; Kitanina, E. É.; Zherebtsov, V. A.; Peganova, M. M.; Stepanov, S. G.; Bondarenko, D. A.; Morisson, D.

    2016-09-01

    This paper presents the results of experimental investigations of the liberation of air in gravity flow of aviation fuel through a pipeline with diaphragms. Experiments were carried out in the pressure range 0.2-1.0 bar and temperature range -20 to +20°C. The TC-1 kerosene was preliminarily saturated with air at atmospheric pressure. The liberation of air after the diaphragms with three ratios of the flow area to the cross-sectional area of the pipeline has been investigated. The results of investigations of the two-phase flow in several experimental pipelines containing one or two diaphragms and other local hydraulic resistances have been generalized. The obtained approximation equations permit calculating the hydraulic resistance of the diaphragm in the two-phase flow and the mass gas content of air after the diaphragm in pipelines of complex geometry.

  4. Global map of lithosphere thermal thickness on a 1 deg x 1 deg grid - digitally available

    DEFF Research Database (Denmark)

    Artemieva, Irina

    2014-01-01

    on borehole heat flow measurements (Artemieva and Mooney, 2001), checked with the original publicationsfor data quality, and corrected for paleo-temperature effects where needed. These data are supplemented bycratonic geotherms based on xenolith data.Since heat flow measurements cover not more than half......This presentation reports a 1 deg 1 deg global thermal model for the continental lithosphere (TC1). The modelis digitally available from the author’s web-site: www.lithosphere.info.Geotherms for continental terranes of different ages (early Archean to present) are constrained by reliabledata...... of the continents, the remaining areas (ca. 60% ofthe continents) are filled by the statistical numbers derived from the thermal model constrained by boreholedata. Continental geotherms are statistically analyzed as a function of age and are used to estimate lithospherictemperatures in continental regions...

  5. Chicken Cytochrome P450 1A5 Is the Key Enzyme for Metabolizing T-2 Toxin to 3'OH-T-2

    Directory of Open Access Journals (Sweden)

    Shufeng Shang

    2013-05-01

    Full Text Available The transmission of T-2 toxin and its metabolites into the edible tissues of poultry has potential effects on human health. We report that T-2 toxin significantly induces CYP1A4 and CYP1A5 expression in chicken embryonic hepatocyte cells. The enzyme activity assays of CYP1A4 and CYP1A5 heterologously expressed in HeLa cells indicate that only CYP1A5 metabolizes T-2 to 3'OH-T-2 by the 3'-hydroxylation of isovaleryl groups. In vitro enzyme assays of recombinant CYP1A5 expressed in DH5α further confirm that CYP1A5 can convert T-2 into TC-1 (3'OH-T-2. Therefore, CYP1A5 is critical for the metabolism of trichothecene mycotoxin in chickens.

  6. Charmonium correlation and spectral functions at finite temperature

    CERN Document Server

    Ding, H -T; Kaczmarek, O; Karsch, F; Satz, H; Soeldner, W

    2010-01-01

    We study the properties of charmonium states at finite temperature in quenched QCD on isotropic lattices. We measured charmonium correlators using non-perturbatively $\\cO(a)$ improved clover fermions on fine ($a=0.01$ fm) lattices with a relatively large size of $128^{3}\\times 96$, $128^3\\times48$, $128^3\\times32$ and $128^3\\times24$ at $0.73~T_c$, $1.46~T_c$, $2.20~T_c$ and $2.93~T_c$, respectively. Our analysis suggests that $\\Jpsi$ is melted already at $1.46~T_c$ and $\\eta_c$ starts to dissolve at $1.46~T_c$ and does not exist at higher temperatures. We also identify the heavy quark transport contribution at the spectral function level for the first time.

  7. Viscosity of net-baryon fluid near the QCD critical point

    CERN Document Server

    Antoniou, N G; Kapoyannis, A S

    2016-01-01

    In the dynamics of the QCD critical point, the net-baryon fluid, linked to the slow component of the order parameter, relaxes to a 3d Ising system in equilibrium. The transport coefficients develop power-law singularities in the limit $T \\rightarrow T_c$, $\\mu_b=\\mu_c$, associated with the critical exponents of the 3d Ising universality class. An analytical study of shear and bulk viscosity, with constraints imposed by universality and the requirements of a class of strong coupling theories, is performed in the neighbourhood of the critical point. It is found that the shear viscosity of the net-baryon fluid is restricted in the domain $1.6\\leq 4\\pi\\frac{\\eta}{s}\\leq 3.7$ for $T_c 1.23 T_c$) but rising towards the singularity at $T=T_c$.

  8. Methods for computing weighting tables based on local power expansion for tristimulus values computations.

    Science.gov (United States)

    Li, Changjun; Oleari, Claudio; Melgosa, Manuel; Xu, Yang

    2011-11-01

    In this paper, two types of weighting tables are derived by applying the local power expansion method proposed by Oleari [Color Res. Appl. 25, 176 (2000)]. Both tables at two different levels consider the deconvolution of the spectrophotometric data for monochromator triangular transmittance. The first one, named zero-order weighting table, is similar to weighting table 5 of American Society for Testing and Materials (ASTM) used with the measured spectral reflectance factors (SRFs) corrected by the Stearns and Stearns formula. The second one, named second-order weighting table, is similar to weighting table 6 of ASTM and must be used with the undeconvoluted SRFs. It is hoped that the results of this paper will aid the International Commission on Illumination TC 1-71 on tristimulus integration in focusing on ongoing methods, testing, and recommendations.

  9. Evaluation of clinical usefulness of myocardial perfusion imaging with tetrofosmin in patients with ischemic heart disease. Comparison with [sup 201]Tl SPECT

    Energy Technology Data Exchange (ETDEWEB)

    Yoshida, Tsuyoshi; Sasaki, Masayuki; Ichiya, Yuichi (Kyushu Univ., Fukuoka (Japan). Faculty of Medicine) (and others)

    1994-09-01

    We evaluated the clinical usefulness of [sup 99m]Tc-1, 2-bis[bis(2-ethoxyethyl)phosphino]ethane (tetrofosmin) and compared it with [sup 201]Tl. The subjects consisted of 12 patients including 8 patients with old myocardial infarction (OMI), 2 with effort angina, one with stable angina and one with myocarditis. The tetrofosmin SPECT images were obtained during exercise and at rest. The quality of tetrofosmin SPECT images was equal or slightly superior to that of [sup 201]Tl. And the sensitivity, specificity and accuracy of tetrofosmin for the detection of coronary stenosis and/or obstruction were equal to that of [sup 201]Tl. We conclude that tetrofosmin is useful in the diagnosis of ischemic heart disease. (author).

  10. Sleeping Beauty transposase structure allows rational design of hyperactive variants for genetic engineering.

    Science.gov (United States)

    Voigt, Franka; Wiedemann, Lisa; Zuliani, Cecilia; Querques, Irma; Sebe, Attila; Mátés, Lajos; Izsvák, Zsuzsanna; Ivics, Zoltán; Barabas, Orsolya

    2016-03-30

    Sleeping Beauty (SB) is a prominent Tc1/mariner superfamily DNA transposon that provides a popular genome engineering tool in a broad range of organisms. It is mobilized by a transposase enzyme that catalyses DNA cleavage and integration at short specific sequences at the transposon ends. To facilitate SB's applications, here we determine the crystal structure of the transposase catalytic domain and use it to model the SB transposase/transposon end/target DNA complex. Together with biochemical and cell-based transposition assays, our structure reveals mechanistic insights into SB transposition and rationalizes previous hyperactive transposase mutations. Moreover, our data enables us to design two additional hyperactive transposase variants. Our work provides a useful resource and proof-of-concept for structure-based engineering of tailored SB transposases.

  11. Thermal and Dielectric Studies On Ge10se69tl21 Chalcogenide Glass

    Directory of Open Access Journals (Sweden)

    B.J. Madhu

    2011-01-01

    Full Text Available Bulk Ge10Se69Tl21 chalcogenide glass is prepared by melt quenching technique. Thermal analysis of bulk Ge10Se69Tl21 glass has been undertaken using temperature modulated Alternating Differential Scanning Calorimetry (ADSC. The Ge10Se69Tl21 glass is found to exhibit single glass transition temperature (Tg and double stage crystallization reactions (Tc1 & Tc2. The dependence of dielectric properties such as dielectric loss tangent (tanδ, dielectric constant (ε’ and dielectric loss factor (ε’’ on the frequency has been studied at the room temperature in the frequency range 10 kHz to 5 MHz. The dielectric parameters tanδ, ε’and ε’’ are found to decrease with the increase in the frequency. Further, resistance of the Ge10Se69Tl21 sample is also found to decrease with the increase in the frequency.

  12. Identification of Bari Transposons in 23 Sequenced Drosophila Genomes Reveals Novel Structural Variants, MITEs and Horizontal Transfer.

    Directory of Open Access Journals (Sweden)

    Antonio Palazzo

    Full Text Available Bari elements are members of the Tc1-mariner superfamily of DNA transposons, originally discovered in Drosophila melanogaster, and subsequently identified in silico in 11 sequenced Drosophila genomes and as experimentally isolated in four non-sequenced Drosophila species. Bari-like elements have been also studied for their mobility both in vivo and in vitro. We analyzed 23 Drosophila genomes and carried out a detailed characterization of the Bari elements identified, including those from the heterochromatic Bari1 cluster in D. melanogaster. We have annotated 401 copies of Bari elements classified either as putatively autonomous or inactive according to the structure of the terminal sequences and the presence of a complete transposase-coding region. Analyses of the integration sites revealed that Bari transposase prefers AT-rich sequences in which the TA target is cleaved and duplicated. Furthermore evaluation of transposon's co-occurrence near the integration sites of Bari elements showed a non-random distribution of other transposable elements. We also unveil the existence of a putatively autonomous Bari1 variant characterized by two identical long Terminal Inverted Repeats, in D. rhopaloa. In addition, we detected MITEs related to Bari transposons in 9 species. Phylogenetic analyses based on transposase gene and the terminal sequences confirmed that Bari-like elements are distributed into three subfamilies. A few inconsistencies in Bari phylogenetic tree with respect to the Drosophila species tree could be explained by the occurrence of horizontal transfer events as also suggested by the results of dS analyses. This study further clarifies the Bari transposon's evolutionary dynamics and increases our understanding on the Tc1-mariner elements' biology.

  13. A molecular computational model improves the preoperative diagnosis of thyroid nodules

    Directory of Open Access Journals (Sweden)

    Tomei Sara

    2012-09-01

    Full Text Available Abstract Background Thyroid nodules with indeterminate cytological features on fine needle aspiration (FNA cytology have a 20% risk of thyroid cancer. The aim of the current study was to determine the diagnostic utility of an 8-gene assay to distinguish benign from malignant thyroid neoplasm. Methods The mRNA expression level of 9 genes (KIT, SYNGR2, C21orf4, Hs.296031, DDI2, CDH1, LSM7, TC1, NATH was analysed by quantitative PCR (q-PCR in 93 FNA cytological samples. To evaluate the diagnostic utility of all the genes analysed, we assessed the area under the curve (AUC for each gene individually and in combination. BRAF exon 15 status was determined by pyrosequencing. An 8-gene computational model (Neural Network Bayesian Classifier was built and a multiple-variable analysis was then performed to assess the correlation between the markers. Results The AUC for each significant marker ranged between 0.625 and 0.900, thus all the significant markers, alone and in combination, can be used to distinguish between malignant and benign FNA samples. The classifier made up of KIT, CDH1, LSM7, C21orf4, DDI2, TC1, Hs.296031 and BRAF had a predictive power of 88.8%. It proved to be useful for risk stratification of the most critical cytological group of the indeterminate lesions for which there is the greatest need of accurate diagnostic markers. Conclusion The genetic classification obtained with this model is highly accurate at differentiating malignant from benign thyroid lesions and might be a useful adjunct in the preoperative management of patients with thyroid nodules.

  14. Magnetic resonance imaging of mouse islet grafts labeled with novel chitosan-coated superparamagnetic iron oxide nanoparticles.

    Directory of Open Access Journals (Sweden)

    Jyuhn-Huarng Juang

    Full Text Available OBJECT: To better understand the fate of islet isografts and allografts, we utilized a magnetic resonance (MR imaging technique to monitor mouse islets labeled with a novel MR contrast agent, chitosan-coated superparamagnetic iron oxide (CSPIO nanoparticles. MATERIALS AND METHODS: After being incubated with and without CSPIO (10 µg/ml, C57BL/6 mouse islets were examined under transmission electron microscope (TEM and their insulin secretion was measured. Cytotoxicity was examined in α (αTC1 and β (NIT-1 and βTC cell lines as well as islets. C57BL/6 mice were used as donors and inbred C57BL/6 and Balb/c mice were used as recipients of islet transplantation. Three hundred islets were transplanted under the left kidney capsule of each mouse and then MR was performed in the recipients periodically. At the end of study, the islet graft was removed for histology and TEM studies. RESULTS: After incubation of mouse islets with CSPIO (10 µg/mL, TEM showed CSPIO in endocytotic vesicles of α- and β-cells at 8 h. Incubation with CSPIO did not affect insulin secretion from islets and death rates of αTC1, NIT-1 and βTC cell lines as well as islets. After syngeneic and allogeneic transplantation, grafts of CSPIO-labeled islets were visualized on MR scans as persistent hypointense areas. At 8 weeks after syngeneic transplantation and 31 days after allogeneic transplantation, histology of CSPIO-labeled islet grafts showed colocalized insulin and iron staining in the same areas but the size of allografts decreased with time. TEM with elementary iron mapping demonstrated CSPIO distributed in the cytoplasm of islet cells, which maintained intact ultrastructure. CONCLUSION: Our results indicate that after syngeneic and allogeneic transplantation, islets labeled with CSPIO nanoparticles can be effectively and safely imaged by MR.

  15. Genomic and evolutionary analyses of Tango transposons in Aedes aegypti, Anopheles gambiae and other mosquito species.

    Science.gov (United States)

    Coy, M R; Tu, Z

    2007-08-01

    Tango is a transposon of the Tc1 family and was originally discovered in the African malaria mosquito, Anopheles gambiae. Here we report a systematic analysis of the genome sequence of the yellow fever mosquito, Aedes aegypti, which uncovered three distinct Tango transposons. We name the only An. gambiae Tango transposon AgTango1 and the three Ae. aegypti Tango elements AeTango1-3. Like AgTango1, AeTango1 and AeTango2 elements both have members that retain characteristics of autonomous elements such as intact open reading frames and terminal inverted repeats (TIRs). AeTango3 is a degenerate transposon with no full-length members. All full-length Tango transposons contain subterminal direct repeats within their TIRs. AgTango1 and AeTango1-3 form a single clade among other Tc1 transposons. Within this clade, AgTango1 and AeTango1 are closely related and share approximately 80% identity at the amino acid level, which exceeds the level of similarity of the majority of host genes in the two species. A survey of Tango in other mosquito species was carried out using degenerate PCR. Tango was isolated and sequenced in all members of the An. gambiae species complex, Aedes albopictus and Ochlerotatus atropalpus. Oc. atropalpus contains a rich diversity of Tango elements, while Tango elements in Ae. albopictus and the An. gambiae species complex all belong to Tango1. No Tango was detected in Culex pipiens quinquefasciatus, Anopheles stephensi, Anopheles dirus, Anopheles farauti or Anopheles albimanus using degenerate PCR. Bioinformatic searches of the Cx. p. quinquefasciatus (~10 x coverage) and An. stephensi (0.33 x coverage) databases also failed to uncover any Tango elements. Although other evolutionary scenarios cannot be ruled out, there are indications that Tango1 underwent horizontal transfer among divergent mosquito species.

  16. The effects of citrus extract (Citrox©) on the naturally occurring microflora and inoculated pathogens, Bacillus cereus and Salmonella enterica, in a model food system and the traditional Greek yogurt-based salad Tzatziki.

    Science.gov (United States)

    Tsiraki, Maria I; Savvaidis, Ioannis N

    2016-02-01

    The antimicrobial effect of citrus extract (at 1 mL/kg [TC1] and 2 mL/kg [TC2]) on the naturally occurring microflora and inoculated pathogens (Bacillus cereus and Salmonella enterica, at ca. 6 log cfu/g) in the traditional Greek yogurt-based salad Tzatziki during storage under vacuum at 4 or 10 °C was examined. We also examined the effect of citrus extract (Citrox(©)) against the two aforementioned pathogens in tryptic soy broth (TSB). Of the two treatments, TC2 yielded the lowest yeast counts, irrespective of temperature, resulting in approximately 2 (4 °C) and 3 (10 °C) log reductions on the final day of storage (70 and 30 days, respectively). Although panelists preferred the TC1-treated salad, the TC2-treated product was sensorily acceptable. Therefore, at the concentrations used, Citrox had no negative sensorial effect on the Tzatziki. During storage, the Bacillus populations in the Citrox-treated Tzatziki samples progressively decreased, showing major declines from days 12 and 28 (at 10 and 4 °C, respectively). Citrox, especially at 2 mL/kg, had a significant effect on the survival of B. cereus. S. enterica showed major declines in all untreated Tzatziki samples from day 0-70 (4 °C) and from day 0-30 (10 °C), with averages of 2.5 and 2.8 log cfu/g, respectively. The results indicate that Citrox (at 1 and 2 mL/kg) is effective, from a safety standpoint, for reducing Bacillus and Salmonella spp. in Tzatziki. In addition, 2% citrus extract also showed a higher inhibitory effect against B. cereus and S. enterica grown in TSB than 1% citrus extract.

  17. Novel anti-metastatic action of cidofovir mediated by inhibition of E6/E7, CXCR4 and Rho/ROCK signaling in HPV tumor cells.

    Directory of Open Access Journals (Sweden)

    Abdessamad Amine

    Full Text Available Cervical cancer is frequently associated with HPV infection. The expression of E6 and E7 HPV oncoproteins is a key factor in its carcinogenicity and might also influence its virulence, including metastatic conversion. The cellular mechanisms involved in metastatic spread remain elusive, but pro-adhesive receptors and their ligands, such as SDF-1alpha and CXCR4 are implicated. In the present study, we assessed the possible relationship between SDF-1alpha/CXCR4 signaling, E6/E7 status and the metastatic process. We found that SDF-1alpha stimulated the invasion of E6/E7-positive cancer cell lines (HeLa and TC-1 in Matrigel though CXCR4 and subsequent Rho/ROCK activation. In pulmonary metastatic foci generated by TC-1 cells IV injection a high proportion of cells expressed membrane-associated CXCR4. In both cases models (in vitro and in vivo cell adhesion and invasion was abrogated by CXCR4 immunological blockade supporting a contribution of SDF-1alpha/CXCR4 to the metastatic process. E6 and E7 silencing using stable knock-down and the approved anti-viral agent, Cidofovir decreased CXCR4 gene expression as well as both, constitutive and SDF-1alpha-induced cell invasion. In addition, Cidofovir inhibited lung metastasis (both adhesion and invasion supporting contribution of E6 and E7 oncoproteins to the metastatic process. Finally, potential signals activated downstream SDF-1alpha/CXCR4 and involved in lung homing of E6/E7-expressing tumor cells were investigated. The contribution of the Rho/ROCK pathway was suggested by the inhibitory effect triggered by Cidofovir and further confirmed using Y-27632 (a small molecule ROCK inhibitor. These data suggest a novel and highly translatable therapeutic approach to cervix cancer, by inhibition of adhesion and invasion of circulating HPV-positive tumor cells, using Cidofovir and/or ROCK inhibition.

  18. Role of chemokines and their receptors in viral persistence and liver damage during chronic hepatitis C virus infection

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Chemokines produced in the liver during hepatitis C virus (HCV) infection induce migration of activated T cells from the periphery to infected parenchyma. The milieu of chemokines secreted by infected hepatocytes is predominantly associated with the T-helper cell/Tc1 T cell (Th1/Tc1) response. These chemokines consist of CCL3 (macrophage inflammatory protein-1α; MIP-1α), CCL4 (MIP-1β), CCL5 (regulated on activation normal T cell expressed and secreted; RANTES), CXCL10 (interferon-γ-inducible protein-10; IP-10),CXCL11 (interferon-inducible T-cell α chemoattractant; I-TAC), and CXCL9 (monokine induced by interferon γ; Mig) and they recruit T cells expressing either CCR5 or CXCR3 chemokine receptors. Intrahepatic and peripheral blood levels of these chemokines are increased during chronic hepatitis C. The interaction between chemokines and their receptors is essential in recruiting HCV-specific T cells to control the infection. When the adaptive immune response fails in this task, non-specific T cells without the capacity to control the infection are also recruited to the liver, and these are ultimately responsible for the persistent hepatic damage. The modulation of chemokine receptor expression and chemokine secretion could be a viral escape mechanism to avoid specific T cell migration to the liver during the early phase of infection, and to maintain liver viability during the chronic phase, by impairing non-specific T cell migration. Some chemokines and their receptors correlate with liver damage, and CXCL10 (IP-10) and CXCR3 levels have shown a clinical utility as predictors of treatment response outcome. The regulation of chemokines and their receptors could be a future potential therapeutic target to decrease liver inflammation and to increase specific T cell migration to the infected liver.

  19. Evaluation of long bone surface textures as ontogenetic indicators in centrosaurine ceratopsids.

    Science.gov (United States)

    Tumarkin-Deratzian, Allison R

    2009-09-01

    The search for criteria for aging non-mammalian fossil vertebrates has preoccupied paleobiologists in recent years. Previous studies of the long bones of pterosaurs and modern and subfossil birds as well as of cranial material of centrosaurine ceratopsid dinosaurs have documented variations in surface textures that seem to be ontogenetically related. In this study, long bones from the centrosaurine ceratopsid genera Centrosaurus, Einiosaurus, and Pachyrhinosaurus are examined to test the hypothesis that changes in bone surface textures and reduction of surface porosity could be correlated with size (and presumably age) classes, as has been previously documented in pterosaurs and birds. The data set includes 141 bones representing all six long bone elements, collected from monodominant centrosaurine bone beds. Bone surface patterns are documented by macroscopic visual examination, and a sequence of five texture classes ordered by decreasing surface porosity is described based on the common distributions of these patterns. Calculations of Spearman's rank correlation coefficients reveal significant correlations between texture class and size. The smallest bones are invariably associated with porous midshaft textures that grade to fibrous and long-grained patterns proximally and distally [Texture Class (TC) 1]. Post-hoc analysis after Kruskal-Wallis ANOVA on ranks confirms that the mean size of TC1 bones is, in most cases, significantly different than the mean size of bones in other texture classes. Results of this study suggest the presence of an ontogenetic surface textural signal in centrosaurine long bones; however, comparison of texture classes with size-independent maturity criteria is needed to clarify further the potential ontogenetic significance of higher texture classes.

  20. C3-Luc Cells Are an Excellent Model for Evaluation of Cellular Immunity following HPV16L1 Vaccination.

    Directory of Open Access Journals (Sweden)

    Li-Li Li

    Full Text Available C3 and TC-1 are the two model cell lines most commonly used in studies of vaccines and drugs against human papillomavirus (HPV infection. Because C3 cells contain both the HPV16 E and L genes, but TC-1 cells contain only the HPV16 E genes, C3 cells are usually used as the model cell line in studies targeting the HPV16 L protein. However, expression of the L1 protein is difficult to detect in C3 cells using common methods. In our study, Short tandem repeat analysis (STR was used to demonstrate that C3 cells are indeed derived from mice, PCR results show that HPV16 L1, E6 and E7 genes were detected in C3 genomic DNA, and RT-PCR results demonstrated that L1 transcription had occurred in C3 cells. However, the expression of C3 protein was not found in the results of western blot and immunohistochemistry (IHC. Growth and proliferation of C3 were inhibited by mice spleen lymphocytes that had been immunized with a vaccine against HPV16L1. The luciferase gene was integrated into C3 cells, and it was confirmed that addition of the exogenous gene had no effect on C3 cells by comparing cell growth and tumor formation with untransformed cells. Cells stably expressing luciferase (C3-luc were screened and subcutaneously injected into the mice. Tumors became established and were observed using a Spectrum Pre-clinical in Vivo Imaging System. Tumor size of mice in the different groups at various time points was calculated by counting photons. The sensitivity of the animals to the vaccine was quantified by statistical comparison. Ten or 30 days following injection of the C3-luc cells, tumor size differed significantly between the PBS and vaccine groups, indicating that C3 cells were susceptible to vaccination even after tumors were formed in vivo.