WorldWideScience

Sample records for aquatic microbial samples

  1. Rapid detection of microbial cell abundance in aquatic systems.

    Science.gov (United States)

    Rocha, Andrea M; Yuan, Quan; Close, Dan M; O'Dell, Kaela B; Fortney, Julian L; Wu, Jayne; Hazen, Terry C

    2016-11-15

    The detection and quantification of naturally occurring microbial cellular densities is an essential component of environmental systems monitoring. While there are a number of commonly utilized approaches for monitoring microbial abundance, capacitance-based biosensors represent a promising approach because of their low-cost and label-free detection of microbial cells, but are not as well characterized as more traditional methods. Here, we investigate the applicability of enhanced alternating current electrokinetics (ACEK) capacitive sensing as a new application for rapidly detecting and quantifying microbial cellular densities in cultured and environmentally sourced aquatic samples. ACEK capacitive sensor performance was evaluated using two distinct and dynamic systems - the Great Australian Bight and groundwater from the Oak Ridge Reservation in Oak Ridge, TN. Results demonstrate that ACEK capacitance-based sensing can accurately determine microbial cell counts throughout cellular concentrations typically encountered in naturally occurring microbial communities (10(3)-10(6) cells/mL). A linear relationship was observed between cellular density and capacitance change correlations, allowing a simple linear curve fitting equation to be used for determining microbial abundances in unknown samples. This work provides a foundation for understanding the limits of capacitance-based sensing in natural environmental samples and supports future efforts focusing on evaluating the robustness ACEK capacitance-based within aquatic environments. PMID:27315516

  2. Estimating Aquatic Insect Populations. Introduction to Sampling.

    Science.gov (United States)

    Chihuahuan Desert Research Inst., Alpine, TX.

    This booklet introduces high school and junior high school students to the major groups of aquatic insects and to population sampling techniques. Chapter 1 consists of a short field guide which can be used to identify five separate orders of aquatic insects: odonata (dragonflies and damselflies); ephemeroptera (mayflies); diptera (true flies);…

  3. Microbial detoxification of metalaxyl in aquatic system

    Institute of Scientific and Technical Information of China (English)

    Ahmed H.Massoud; Aly S.Derbalah; El-Sayed.B.Belal

    2008-01-01

    Four microorganisms,Pseudomonas sp.(ER2),Aspergillus niger (ER6),Cladosporium herbarum (ER4) and Penicilluim sp.(ER3),were isolated from cucumber leaves previously treated with metalaxyl using enrichment technique.These isolates were evaluated for detoxification of metalaxyl at the recommended dose level in aquatic system.The effect of pH and temperature on the growth ability of the tested isolates was also investigated by measuring the intracellular protein and mycelia dry weight for bacterial and fungal isolates,respectively.Moreover,the toxicity of metalaxyl after 28 d of treatment with the tested isolates was evaluated to confirm the complete removal of any toxic materials (metalaxyl and its metabolites).The results showed that the optimum degree pH for the growth of metalaxyl degrading isolates (bacterial and fungal isolates) was 7.The temperature 30℃ appeared to be the optimum degree for the growth of either fungal or bacterial isolates.The results showed that Pseudomonas sp.(ER2) was the most effective isolate in metalaxyl degradation followed by Aspergillus niger (ER6),Cladosporium herbarum (ER4) and PeniciUuim sp.(ER3),respectively.There is no toxicity of metalaxyl detected in the supernatant after 28 d of treannent with Pseudomonas sp.(ER2).The results suggest that bioremediation by Pseudomonas sp.(ER2) isolate was considered to be effective method for detoxification of metalaxyl in aqueous media.

  4. Measurement and interpretation of microbial adenosine tri-phosphate (ATP) in aquatic environments.

    Science.gov (United States)

    Hammes, Frederik; Goldschmidt, Felix; Vital, Marius; Wang, Yingying; Egli, Thomas

    2010-07-01

    There is a widespread need for cultivation-free methods to quantify viability of natural microbial communities in aquatic environments. Adenosine tri-phosphate (ATP) is the energy currency of all living cells, and therefore a useful indicator of viability. A luminescence-based ATP kit/protocol was optimised in order to detect ATP concentrations as low as 0.0001 nM with a standard deviation of water samples from a variety of aquatic environments (drinking water, groundwater, bottled water, river water, lake water and wastewater effluent) were analysed for extracellular ATP and microbial ATP in comparison with flow-cytometric (FCM) parameters. Microbial ATP concentrations ranged between 3% and 97% of total ATP concentrations, and correlated well (R(2)=0.8) with the concentrations of intact microbial cells (after staining with propidium iodide). From this correlation, we calculated an average ATP-per-cell value of 1.75x10(-10)nmol/cell. An even better correlation (R(2)=0.88) was observed between intact biovolume (derived from FCM scatter data) and microbial ATP concentrations, and an average ATP-per-biovolume value of 2.95x10(-9)nmol/microm(3) was calculated. These results support the use of ATP analysis for both routine monitoring and research purposes, and contribute towards a better interpretation of ATP data. PMID:20605621

  5. Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

    OpenAIRE

    P. Stief

    2013-01-01

    Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal–microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal–microbe interactions in the benthos of aquatic ecosystems: (i) e...

  6. Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

    OpenAIRE

    P. Stief

    2013-01-01

    Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal–microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal–microbe interactions in the benthos of aquatic ecosys...

  7. Effect of adaptation to phenol on biodegradation of monosubstituted phenols by aquatic microbial communities.

    OpenAIRE

    Shimp, R J; Pfaender, F K

    1987-01-01

    The adaptation of a mixed aquatic microbial community to phenol was examined in microcosms receiving phenol as a sole carbon source. Extended exposure (adaptation) to phenol resulted in adaptation of the microbial community to the structurally related aromatic compounds m-cresol, m-aminophenol, and p-chlorophenol. The increased biodegradation potential of the phenol-adapted microbial community was accompanied by a concurrent increase in the number of microorganisms able to degrade the three t...

  8. Evaluation of seven aquatic sampling methods for amphibians and other aquatic fauna

    Science.gov (United States)

    Gunzburger, M.S.

    2007-01-01

    To design effective and efficient research and monitoring programs researchers must have a thorough understanding of the capabilities and limitations of their sampling methods. Few direct comparative studies exist for aquatic sampling methods for amphibians. The objective of this study was to simultaneously employ seven aquatic sampling methods in 10 wetlands to compare amphibian species richness and number of individuals detected with each method. Four sampling methods allowed counts of individuals (metal dipnet, D-frame dipnet, box trap, crayfish trap), whereas the other three methods allowed detection of species (visual encounter, aural, and froglogger). Amphibian species richness was greatest with froglogger, box trap, and aural samples. For anuran species, the sampling methods by which each life stage was detected was related to relative length of larval and breeding periods and tadpole size. Detection probability of amphibians varied across sampling methods. Box trap sampling resulted in the most precise amphibian count, but the precision of all four count-based methods was low (coefficient of variation > 145 for all methods). The efficacy of the four count sampling methods at sampling fish and aquatic invertebrates was also analyzed because these predatory taxa are known to be important predictors of amphibian habitat distribution. Species richness and counts were similar for fish with the four methods, whereas invertebrate species richness and counts were greatest in box traps. An effective wetland amphibian monitoring program in the southeastern United States should include multiple sampling methods to obtain the most accurate assessment of species community composition at each site. The combined use of frogloggers, crayfish traps, and dipnets may be the most efficient and effective amphibian monitoring protocol. ?? 2007 Brill Academic Publishers.

  9. MICROBIAL TRANSFORMATION OF SELECTED ORGANIC CHEMICALS IN NATURAL AQUATIC SYSTEMS

    Science.gov (United States)

    A method for describing the microbial degradation of xenobiotics through the use of a second-order reaction equation was tested in several water bodies in the United States and Russia. he experiment was aimed at studying the microbial transformation of a herbicide widely used in ...

  10. Succession of aquatic microbial communities as a result of the water quality variations in continuous water

    Institute of Scientific and Technical Information of China (English)

    WANG Rong-chang; WEN Xiang-hua; QIAN Yi

    2004-01-01

    The changes of structural and functional parameters of aquatic microbial communities in continuous water on campus of Tsinghua University, China are investigated by polyurethane foam unit(PFU) method. The measured compositions of the communities include alga, protozoa, and some metazoa(such as rotifers). The measured indicators of water quality include water temperature, pH value, dissolved oxygen(DO), potassium permanganate index(CODMn), total nitrogen(TN), total phosphorus(TP) and chlorophyll-a(Chla). The trophic level, expressed by the trophic level indices(TLIc), is assessed with analytic hierarchy process and principal component analysis(AHP-PCA) method. The changing trends of the structural and functional parameters of aquatic microbial communities, such as Margalef index of diversity(D), Shannon-weaver index of diversity (H), Heterotropy index(HI), number of species when the colonization gets equilibrium(Seq), colonizing speed constant(G) and time spent when 90 percent of Seq colonized in PFU(T90%), are also analyzed. The experimental results showed the succession of aquatic microbial communities along the water flow is consistent with the water quality changes, so the parameters of microbial community can reflect the changes of water quality from the ecological view.

  11. [Seasonal variation of functional diversity of aquatic microbial community in Apostichopus japonicus cultural pond].

    Science.gov (United States)

    Yan, Fa-Jun; Tian, Xiang-Li; Dong, Shuang-Lin; Yang, Gang

    2014-05-01

    The functional diversity of aquatic microbial communities in sea cucumber (Apostichopus japonicus) cultural ponds was examined in this paper. The Biolog plate technique and redundancy analysis (RDA) method were used to evaluate seasonal changes and their relationships with environmental factors. The results showed that both total amount and types of carbon sources utilized by microbes in the sea cucumber cultural ponds varied seasonally, and were the highest in summer and lowest in winter, with polymers being the main type of carbon sources. Principal component analysis revealed that the carbon utilization diversity of the microbial communities varied significantly over the seasonal courses. A total of 10 categories of carbon sources were significantly related to the principal component 1, among which were polymers, carbohydrates, carboxylic acids, amino acids, and amines. Significant seasonal changes were detected for all carbon utilization diversity indices of the microbial communities, including Shannon, McIntosh, Simpson, and S-E. However, seasonal variations were different among the microbial diversity indices. RDA analysis revealed that TP, NO(3-)-N, TN, and PO4(3-)-P were the critical environmental factors influencing the seasonal changes in functional diversity of aquatic microbial community in sea cucumber cultural ponds. PMID:25129954

  12. Comparison of aquatic macroinvertebrate samples collected using different field methods

    Science.gov (United States)

    Lenz, Bernard N.; Miller, Michael A.

    1996-01-01

    Government agencies, academic institutions, and volunteer monitoring groups in the State of Wisconsin collect aquatic macroinvertebrate data to assess water quality. Sampling methods differ among agencies, reflecting the differences in the sampling objectives of each agency. Lack of infor- mation about data comparability impedes data shar- ing among agencies, which can result in duplicated sampling efforts or the underutilization of avail- able information. To address these concerns, com- parisons were made of macroinvertebrate samples collected from wadeable streams in Wisconsin by personnel from the U.S. Geological Survey- National Water Quality Assessment Program (USGS-NAWQA), the Wisconsin Department of Natural Resources (WDNR), the U.S. Department of Agriculture-Forest Service (USDA-FS), and volunteers from the Water Action Volunteer-Water Quality Monitoring Program (WAV). This project was part of the Intergovernmental Task Force on Monitoring Water Quality (ITFM) Wisconsin Water Resources Coordination Project. The numbers, types, and environmental tolerances of the organ- isms collected were analyzed to determine if the four different field methods that were used by the different agencies and volunteer groups provide comparable results. Additionally, this study com- pared the results of samples taken from different locations and habitats within the same streams.

  13. Microbial biotechnology for remediation of aquatic habitats polluted with chromium

    Directory of Open Access Journals (Sweden)

    Viorica Coşier

    2008-12-01

    Full Text Available Chromium may occur in nine different forms of oxidation ranging from ?II to +VI, with forms II, III and VI as the most commonly encountered. In Cluj county, chromium pollution dates well back in time and has caused important dysfunction to the mechanical-biological wastewater purification station of the city of Cluj (Coşier & Diţă 1996. The purpose of this study was to develop one microbial method able to reduce hexavalent chromium (mobile, permeable to cell membrane, carcinogenic and mutagenic (Ishikawa et al 1994 to the trivalent form (insoluble and an essential element for humans (Song et al 2006. Different sources of chromium-reducing bacteria and many sources of carbon and energy added to the Kvasnikov mineral basal medium (Komori et al 1990 with increasing amount of chromate (200- 1000 mg/l were tested. Two bacterial strains, able to reduce even 1000 mg chromate/l, were isolated in pure culture. For one of these bacterial strains, we determined the optimum conditions for the reduction of Cr (VI.

  14. Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

    Science.gov (United States)

    Stief, P.

    2013-12-01

    Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments is enhanced more strongly than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies reveal that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and

  15. The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems

    Directory of Open Access Journals (Sweden)

    Michael Domenic Besmer

    2014-06-01

    Full Text Available Fluorescent staining coupled with flow cytometry (FCM is often used for the monitoring, quantification and characterization of bacteria in engineered and environmental aquatic ecosystems including seawater, freshwater, drinking water, wastewater, and industrial bioreactors. However, infrequent grab sampling hampers accurate characterization and subsequent understanding of microbial dynamics in all of these ecosystems. A logic technological progression is high throughput and full automation of the sampling, staining, measurement, and data analysis steps. Here we assess the feasibility and applicability of automated FCM by means of actual data sets produced with prototype instrumentation. As proof-of-concept we demonstrate examples of microbial dynamics in (i flowing tap water from a municipal drinking water supply network and (ii river water from a small creek subject to two rainfall events. In both cases, automated measurements were done at 15-min intervals during 12 to 14 consecutive days, yielding more than 1000 individual data points for each ecosystem. The extensive data sets derived from the automated measurements allowed for the establishment of baseline data for each ecosystem, as well as for the recognition of daily variations and specific events that would most likely be missed (or miss-characterized by infrequent sampling. In addition, the online FCM data from the river water was combined and correlated with online measurements of abiotic parameters, showing considerable potential for a better understanding of cause-and-effect relationships in aquatic ecosystems. Although several challenges remain, the successful operation of an automated online FCM system and the basic interpretation of the resulting data sets represent a breakthrough towards the eventual establishment of fully automated online microbiological monitoring technologies.

  16. Microbial Condition of Water Samples from Foreign Fuel Storage Facilities

    International Nuclear Information System (INIS)

    In order to assess the microbial condition of foreign spent nuclear fuel storage facilities and their possible impact on SRS storage basins, twenty-three water samples were analyzed from 12 different countries. Fifteen of the water samples were analyzed and described in an earlier report (WSRC-TR-97-00365 [1]). This report describes nine additional samples received from October 1997 through March 1998. The samples include three from Australia, two from Denmark and Germany and one sample from Italy and Greece. Each water sample was analyzed for microbial content and activity as determined by total bacteria, viable aerobic bacteria, viable anaerobic bacteria, viable sulfate-reducing bacteria, viable acid-producing bacteria and enzyme diversity. The results for each water sample were then compared to all other foreign samples analyzed to date and monthly samples pulled from the receiving basin for off-site fuel (RBOF), at SRS. Of the nine samples analyzed, four samples from Italy, Germany and Greece had considerably higher microbiological activity than that historically found in the RBOF. This microbial activity included high levels of enzyme diversity and the presence of viable organisms that have been associated with microbial influenced corrosion in other environments. The three samples from Australia had microbial activities similar to that in the RBOF while the two samples from Denmark had lower levels of microbial activity. These results suggest that a significant number of the foreign storage facilities have water quality standards that allow microbial proliferation and survival

  17. BioDry: An Inexpensive, Low-Power Method to Preserve Aquatic Microbial Biomass at Room Temperature.

    Directory of Open Access Journals (Sweden)

    Steven J Tuorto

    Full Text Available This report describes BioDry (patent pending, a method for reliably preserving the biomolecules associated with aquatic microbial biomass samples, without the need of hazardous materials (e.g. liquid nitrogen, preservatives, etc., freezing, or bulky storage/sampling equipment. Gel electrophoresis analysis of nucleic acid extracts from samples treated in the lab with the BioDry method indicated that molecular integrity was protected in samples stored at room temperature for up to 30 days. Analysis of 16S/18S rRNA genes for presence/absence and relative abundance of microorganisms using both 454-pyrosequencing and TRFLP profiling revealed statistically indistinguishable communities from control samples that were frozen in liquid nitrogen immediately after collection. Seawater and river water biomass samples collected with a portable BioDry "field unit", constructed from off-the-shelf materials and a battery-operated pumping system, also displayed high levels of community rRNA preservation, despite a slight decrease in nucleic acid recovery over the course of storage for 30 days. Functional mRNA and protein pools from the field samples were also effectively conserved with BioDry, as assessed by respective RT-PCR amplification and western blot of ribulose-1-5-bisphosphate carboxylase/oxygenase. Collectively, these results demonstrate that BioDry can adequately preserve a suite of biomolecules from aquatic biomass at ambient temperatures for up to a month, giving it great potential for high resolution sampling in remote locations or on autonomous platforms where space and power are limited.

  18. Microbial Activity in Aquatic Environments Measured by Dimethyl Sulfoxide Reduction and Intercomparison with Commonly Used Methods

    OpenAIRE

    Griebler, Christian; Slezak, Doris

    2001-01-01

    A new method to determine microbial (bacterial and fungal) activity in various freshwater habitats is described. Based on microbial reduction of dimethyl sulfoxide (DMSO) to dimethyl sulfide (DMS), our DMSO reduction method allows measurement of the respiratory activity in interstitial water, as well as in the water column. DMSO is added to water samples at a concentration (0.75% [vol/vol] or 106 mM) high enough to compete with other naturally occurring electron acceptors, as determined with ...

  19. Initial Test of the Benchmark Chemical Approach for Predicting Microbial Transformation Rates in Aquatic Environments

    OpenAIRE

    Newton, Thomas D.; Gattie, David K.; Lewis, David L

    1990-01-01

    Using 2,4-dichlorophenoxyacetic acid methyl ester (2,4-DME) as a benchmark chemical, we determined relative pseudo-first-order rate coefficients for the butoxyethyl ester of 2,4-dichlorophenoxyacetic acid (2,4-DBE), methyl parathion, and methyl-3-chlorobenzoate in a diversity of microbial samples, including water, sediment, biofilm, and floating microbial mats collected from a laboratory mesocosm as well as from streams, lakes, and wetlands in Georgia and Florida. The decreasing order of reac...

  20. Off-site impacts of agricultural composting: role of terrestrially derived organic matter in structuring aquatic microbial communities and their metabolic potential.

    Science.gov (United States)

    Pommier, Thomas; Merroune, Asmaa; Bettarel, Yvan; Got, Patrice; Janeau, Jean-Louis; Jouquet, Pascal; Thu, Thuy D; Toan, Tran D; Rochelle-Newall, Emma

    2014-12-01

    While considered as sustainable and low-cost agricultural amendments, the impacts of organic fertilizers on downstream aquatic microbial communities remain poorly documented. We investigated the quantity and quality of the dissolved organic matter leaching from agricultural soil amended with compost, vermicompost or biochar and assessed their effects on lake microbial communities, in terms of viral and bacterial abundances, community structure and metabolic potential. The addition of compost and vermicompost significantly increased the amount of dissolved organic carbon in the leachate compared with soil alone. Leachates from these additions, either with or without biochar, were highly bioavailable to aquatic microbial communities, although reducing the metabolic potential of the community and harbouring more specific communities. Although not affecting bacterial richness or taxonomic distributions, the specific addition of biochar affected the original lake bacterial communities, resulting in a strongly different community. This could be partly explained by viral burst and converging bacterial abundances throughout the samples. These results underline the necessity to include off-site impacts of agricultural amendments when considering their cascading effect on downstream aquatic ecosystems. PMID:25195703

  1. Metaproteomics of aquatic microbial communities in a deep and stratified estuary.

    Science.gov (United States)

    Colatriano, David; Ramachandran, Arthi; Yergeau, Etienne; Maranger, Roxane; Gélinas, Yves; Walsh, David A

    2015-10-01

    Here we harnessed the power of metaproteomics to assess the metabolic diversity and function of stratified aquatic microbial communities in the deep and expansive Lower St. Lawrence Estuary, located in eastern Canada. Vertical profiling of the microbial communities through the stratified water column revealed differences in metabolic lifestyles and in carbon and nitrogen processing pathways. In productive surface waters, we identified heterotrophic populations involved in the processing of high and low molecular weight organic matter from both terrestrial (e.g. cellulose and xylose) and marine (e.g. organic compatible osmolytes) sources. In the less productive deep waters, chemosynthetic production coupled to nitrification by MG-I Thaumarchaeota and Nitrospina appeared to be a dominant metabolic strategy. Similar to other studies of the coastal ocean, we identified methanol oxidation proteins originating from the common OM43 marine clade. However, we also identified a novel lineage of methanol-oxidizers specifically in the particle-rich bottom (i.e. nepheloid) layer. Membrane transport proteins assigned to the uncultivated MG-II Euryarchaeota were also specifically detected in the nepheloid layer. In total, these results revealed strong vertical structure of microbial taxa and metabolic activities, as well as the presence of specific "nepheloid" taxa that may contribute significantly to coastal ocean nutrient cycling. PMID:26223443

  2. Novel use of cavity ring-down spectroscopy to investigate aquatic carbon cycling from microbial to ecosystem scales

    NARCIS (Netherlands)

    Maher, D.T.; Santos, I.S.; Leuven, J.R.F.W.; Oakes, J.M.; Erler, D.V.; Carvalho, M.C.; Eyre, B.D.

    2013-01-01

    Development of cavity ring-down spectroscopy (CRDS) has enabled real-time monitoring of carbon stable isotope ratios of carbon dioxide and methane in air. Here we demonstrate that CRDS can be adapted to assess aquatic carbon cycling processes from microbial to ecosystem scales. We first measured in

  3. Effects of acute gamma-irradiation on the aquatic microbial microcosm in comparison with chemicals

    Energy Technology Data Exchange (ETDEWEB)

    Fuma, Shoichi, E-mail: fuma@nirs.go.j [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Ishii, Nobuyoshi; Takeda, Hiroshi; Miyamoto, Kiriko; Yanagisawa, Kei [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Doi, Kazutaka; Kawaguchi, Isao [Regulatory Sciences Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Tanaka, Nobuyuki [Environmental Chemistry Division, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506 (Japan); Inamori, Yuhei [Faculty of Symbiotic Systems Science, Fukushima University, 1 Kanayagawa, Fukushima 960-1296 (Japan); Polikarpov, Gennady G. [The A.O. Kovalevsky Institute of Biology of Southern Seas, Sevastopol 99011 (Ukraine)

    2009-12-15

    Effects of acute gamma-irradiation were investigated in the aquatic microcosm consisting of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producers; an oligochaete (Aeolosoma hemprichi), rotifers (Lecane sp. and Philodina sp.) and a ciliate protozoan (Cyclidium glaucoma) as consumers; and more than four species of bacteria as decomposers. At 100 Gy, populations were not affected in any taxa. At 500-5000 Gy, one or three taxa died out and populations of two or three taxa decreased over time, while that of Tolypothrix sp. increased. This Tolypothrix sp. increase was likely an indirect effect due to interspecies interactions. The principal response curve analysis revealed that the main trend of the effects was a dose-dependent population decrease. For a better understanding of radiation risks in aquatic microbial communities, effect doses of gamma-rays compared with copper, herbicides and detergents were evaluated using the radiochemoecological conceptual model and the effect index for microcosm.

  4. Effects of acute γ-irradiation on the aquatic microbial microcosm in comparison with chemicals

    International Nuclear Information System (INIS)

    Effects of acute γ-irradiation were investigated in the aquatic microcosm consisting of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producers; an oligochaete (Aeolosoma hemprichi), rotifers (Lecane sp. and Philodina sp.) and a ciliate protozoan (Cyclidium glaucoma) as consumers; and more than four species of bacteria as decomposers. At 100 Gy, populations were not affected in any taxa. At 500-5000 Gy, one or three taxa died out and populations of two or three taxa decreased over time, while that of Tolypothrix sp. increased. This Tolypothrix sp. increase was likely an indirect effect due to interspecies interactions. The principal response curve analysis revealed that the main trend of the effects was a dose-dependent population decrease. For a better understanding of radiation risks in aquatic microbial communities, effect doses of γ-rays compared with copper, herbicides and detergents were evaluated using the radiochemoecological conceptual model and the effect index for microcosm.

  5. Adenosine triphosphate concentration in relation to microbial biomass in aquatic systems

    Energy Technology Data Exchange (ETDEWEB)

    Cunningham, H.W. Jr.

    1977-01-01

    Analyses of adenosine triphosphate (ATP) extracted from a sediment community of an aquatic ecosystem by the sulfuric acid method are complicated by inhibitions from inorganic and organic compounds. Inhibitions by inorganic compounds are reversible while those by organic compounds are irreversible. The primary inhibition by organic compounds results by complexing with acid-soluble fulvic acids which will prevent the detection of as much as 80% of the ATP present in a sample by the luciferin-luciferase reaction. Analytical techniques were developed to partially circumvent such interferences. Biomass interpretations from ATP concentrations in aquatic systems are complicated by the diversity of the microbiota and by the variability in the carbon to ATP ratio caused by environmental conditions. However, when levels of ATP are considered as a physiological condition of a sedimentary community, this data provides a means to interpret community metabolism not available hitherto.

  6. Microbial sampling of aluminum-clad spent nuclear fuel

    International Nuclear Information System (INIS)

    A microbial sampling program was initiated at the Idaho National Engineering and Environmental Laboratory (INEEL) to ascertain the effect of microbial activity on the corrosion of aluminum clad spent nuclear fuel (SNF) stored in wet and dry conditions. In the newest fuel storage pool at the INEEL (CPP-666) pitting corrosion has been observed on aluminum corrosion coupons that can not be explained by the excellent water chemistry. Pitting corrosion of the aluminum-clad SNF and corrosion coupons has been observed in the older fuel storage pool (CPP-603). Therefore a microbial assessment of the bulk water, and basin surfaces of both fuel pools was conducted. The results of this microbial enumeration show that a viable and active microbial population does exist in planktonic form. Sampling of aluminum corrosion coupons placed next to stored fuel elements show that microbial attachment has occurred and a biofilm has formed. The sampling program was then extended to the surfaces of wet and dry stored fuel elements. Viable cells or spores were found on the surfaces of the ATR fuel elements that were stored under wet and dry conditions. This paper discusses the methodology of sampling the surfaces of SNF stored under wet conditions for the presence of microorganisms and the types of organisms found

  7. When is the best time to sample aquatic macroinvertebrates in ponds for biodiversity assessment?

    OpenAIRE

    Hill, M. J.; Sayer, C. D.; Wood, P J

    2016-01-01

    Ponds are sites of high biodiversity and conservation value, yet there is little or no statutory monitoring of them across most of Europe. There are clear and standardised protocols for sampling aquatic macroinvertebrate communities in ponds, but the most suitable time(s) to undertake the survey(s) remains poorly specified. This paper examined the aquatic macroinvertebrate communities from 95 ponds within different land use types over three seasons (spring, summer and autumn) to determine the...

  8. Effects of acute {gamma}-irradiation on community structure of the aquatic microbial microcosm

    Energy Technology Data Exchange (ETDEWEB)

    Fuma, Shoichi, E-mail: fuma@nirs.go.j [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Ishii, Nobuyoshi; Takeda, Hiroshi [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Doi, Kazutaka; Kawaguchi, Isao [Regulatory Sciences Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Shikano, Shuichi [Center for Northeast Asian Studies, Tohoku University, 41 Kawauchi, Aoba-ku, Sendai, Miyagi 980-8576 (Japan); Tanaka, Nobuyuki [Marine Environment Section, Water and Soil Environment Division, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506 (Japan); Inamori, Yuhei [Faculty of Symbiotic Systems Science, Fukushima University, 1 Kanayagawa, Fukushima 960-1296 (Japan)

    2010-11-15

    To characterise indirect effects of ionising radiation on aquatic microbial communities, effects of acute {gamma}-irradiation were investigated in a microcosm consisting of populations of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producer; a ciliate protozoan (Cyclidium glaucoma), rotifers (Lecane sp. and Philodina sp.) and an oligochaete (Aeolosoma hemprichi) as consumer; and more than four species of bacteria as decomposers. Population changes in the constituent organisms were observed over 160 days after irradiation. Prokaryotic community structure was also examined by denaturing gradient gel electrophoresis (DGGE) of 16S rDNA. Principle response curve analysis revealed that the populations of the microcosm as a whole were not significantly affected at 100 Gy while they were adversely affected at 500-5000 Gy in a dose-dependent manner. However, some effects on each population, including each bacterial population detected by DGGE, did not depend on radiation doses, and some populations in the irradiated microcosm were larger than those of the control. These unexpected results are regarded as indirect effects through interspecies interactions, and possible mechanisms are proposed originating from population changes in other organisms co-existing in the microcosm. For example, some indirect effects on consumers and decomposers likely arose from interspecies competition within each trophic level. It is also likely that prey-predator relationships between producers and consumers caused some indirect effects on producers.

  9. Effects of acute γ-irradiation on community structure of the aquatic microbial microcosm

    International Nuclear Information System (INIS)

    To characterise indirect effects of ionising radiation on aquatic microbial communities, effects of acute γ-irradiation were investigated in a microcosm consisting of populations of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producer; a ciliate protozoan (Cyclidium glaucoma), rotifers (Lecane sp. and Philodina sp.) and an oligochaete (Aeolosoma hemprichi) as consumer; and more than four species of bacteria as decomposers. Population changes in the constituent organisms were observed over 160 days after irradiation. Prokaryotic community structure was also examined by denaturing gradient gel electrophoresis (DGGE) of 16S rDNA. Principle response curve analysis revealed that the populations of the microcosm as a whole were not significantly affected at 100 Gy while they were adversely affected at 500-5000 Gy in a dose-dependent manner. However, some effects on each population, including each bacterial population detected by DGGE, did not depend on radiation doses, and some populations in the irradiated microcosm were larger than those of the control. These unexpected results are regarded as indirect effects through interspecies interactions, and possible mechanisms are proposed originating from population changes in other organisms co-existing in the microcosm. For example, some indirect effects on consumers and decomposers likely arose from interspecies competition within each trophic level. It is also likely that prey-predator relationships between producers and consumers caused some indirect effects on producers.

  10. When is the best time to sample aquatic macroinvertebrates in ponds for biodiversity assessment?

    Science.gov (United States)

    Hill, M J; Sayer, C D; Wood, P J

    2016-03-01

    Ponds are sites of high biodiversity and conservation value, yet there is little or no statutory monitoring of them across most of Europe. There are clear and standardised protocols for sampling aquatic macroinvertebrate communities in ponds, but the most suitable time(s) to undertake the survey(s) remains poorly specified. This paper examined the aquatic macroinvertebrate communities from 95 ponds within different land use types over three seasons (spring, summer and autumn) to determine the most appropriate time to undertake sampling to characterise biodiversity. The combined samples from all three seasons provided the most comprehensive record of the aquatic macroinvertebrate taxa recorded within ponds (alpha and gamma diversity). Samples collected during the autumn survey yielded significantly greater macroinvertebrate richness (76% of the total diversity) than either spring or summer surveys. Macroinvertebrate diversity was greatest during autumn in meadow and agricultural ponds, but taxon richness among forest and urban ponds did not differ significantly temporally. The autumn survey provided the highest measures of richness for Coleoptera, Hemiptera and Odonata. However, richness of the aquatic insect order Trichoptera was highest in spring and lowest in autumn. The results illustrate that multiple surveys, covering more than one season, provide the most comprehensive representation of macroinvertebrate biodiversity. When sampling can only be undertaken on one occasion, the most appropriate time to undertake surveys to characterise the macroinvertebrate community biodiversity is during autumn, although this may need to be modified if other floral and faunal groups need to be incorporated into the sampling programme. PMID:26920128

  11. Efficiency of Different Sampling Tools for Aquatic Macroinvertebrate Collections in Malaysian Streams

    OpenAIRE

    Ghani, Wan Mohd Hafezul Wan Abdul; Rawi, Che Salmah Md; Hamid, Suhaila Abd; Al-Shami, Salman Abdo

    2016-01-01

    This study analyses the sampling performance of three benthic sampling tools commonly used to collect freshwater macroinvertebrates. Efficiency of qualitative D-frame and square aquatic nets were compared to a quantitative Surber sampler in tropical Malaysian streams. The abundance and diversity of macroinvertebrates collected using each tool evaluated along with their relative variations (RVs). Each tool was used to sample macroinvertebrates from three streams draining different areas: a veg...

  12. Aquatic microbial habitats within a neotropical rainforest: bromeliads and pH-associated trends in bacterial diversity and composition.

    Science.gov (United States)

    Goffredi, Shana K; Kantor, Adam H; Woodside, Walter T

    2011-04-01

    Tank-forming bromeliads, suspended in the rainforest canopy, possess foliage arranged in compact rosettes capable of long-term retention of rainwater. This large and unique aquatic habitat is inhabited by microorganisms involved in the important decomposition of impounded material. Moreover, these communities are likely influenced by environmental factors such as pH, oxygen, and light. Bacterial community composition and diversity was determined for the tanks of several bromeliad species (Aechmea and Werauhia) from northern Costa Rica, which span a range of parameters, including tank morphology and pH. These were compared with a nearby forest soil sample, an artificial tank (amber bottle), and a commercially available species (Aechmea). Bacterial community diversity, as measured by 16S rRNA analysis and tRFLP, showed a significant positive correlation with tank pH. A majority of 16S rRNA bacterial phylotypes found in association with acidic bromeliad tanks of pH  5.3, including the commercial bromeliad with the highest pH (6.7), were dominated by Betaproteobacteria, Firmicutes, and Bacteroidetes. To empirically determine the effect of pH on bacterial community, the tank pH of a specimen of Aechmea was depressed, in the field, from 6.5 to 4.5, for 62 days. The resulting community changed predictably with decreased abundance of Betaproteobacteria and Firmicutes and a concomitant increase in Alphaproteobacteria and Acidobacteria. Collectively, these results suggest that bromeliad tanks provide important habitats for a diverse microbial community, distinct from the surrounding environment, which are influenced greatly by acid-base conditions. Additionally, total organic carbon (∼46%) and nitrogen (∼2%) of bromeliad-impounded sediment was elevated relative to soil and gene surveys confirmed the presence of both chitinases and nitrogenases, suggesting that bromeliad tanks may provide important habitats for microbes involved in the biological cycling of carbon and

  13. Effects of chronic γ-irradiation on the aquatic microbial microcosm: equi-dosimetric comparison with effects of heavy metals

    International Nuclear Information System (INIS)

    Effects of chronic γ-irradiation were investigated in the aquatic microcosm consisting of flagellate algae Euglena gracilis as producers, ciliate protozoa Tetrahymena thermophila as consumers and bacteria Escherichia coli as decomposers. At 1.1 Gy day−1, no effects were observed. At 5.1 Gy day−1, cell densities of E. coli showed a tendency to be lower than those of controls. At 9.7 and 24.7 Gy day−1, population decrease was observed in E. coli. E. gracilis and T. thermophila died out after temporal population decrease and subsequent population increase in T. thermophila. It is likely that this temporal population increase was an indirect effect due to interspecies interactions. Effect dose rates of γ-rays were compared with effect concentrations of some metals using the radiochemoecological conceptual model and the effect index for microcosm. Comparison of these community-level effects data with environmental exposure data suggests that ionising radiation, gadolinium and dysprosium have low risks to affect aquatic microbial communities while manganese, nickel and copper have considerable risks. Effects of chronic irradiation were smaller than those of acute irradiation, and an acute to chronic ratio was calculated to be 28 by dividing an acute dose by chronic daily dose rate at which the effect index was 10%. This ratio would be useful for community-level extrapolation from acute to chronic radiation effects. - Highlights: ► Effects of chronic γ-irradiation were investigated in the microbial microcosm. ► A possible indirect effect due to interspecies interactions was detected. ► Effect dose rates of γ-rays were compared with effect concentrations of some metals. ► It is likely that radiation have low risks to affect aquatic microbial communities. ► Effects of chronic γ-irradiation were smaller than those of acute one.

  14. COMPARISON OF MICROBIAL TROPHIC INTERACTIONS IN AQUATIC MICROCOSMS DESIGNED FOR THE TESTING OF INTRODUCED MICROORGANISMS

    Science.gov (United States)

    Two aquatic microcosms of different complexity were calibrated with a eutrophic lake. he simple microcosm consisted of an intact sediment core with overlying water. he complex microcosm was compartmentalized (phytoplankton tank, grazer tank, and sediment cores) to allow manipulat...

  15. Elucidating Microbial Adaptation Dynamics via Autonomous Exposure and Sampling

    Science.gov (United States)

    Grace, J. M.; Verseux, C.; Gentry, D.; Moffet, A.; Thayabaran, R.; Wong, N.; Rothschild, L.

    2013-12-01

    The adaptation of micro-organisms to their environments is a complex process of interaction between the pressures of the environment and of competition. Reducing this multifactorial process to environmental exposure in the laboratory is a common tool for elucidating individual mechanisms of evolution, such as mutation rates[Wielgoss et al., 2013]. Although such studies inform fundamental questions about the way adaptation and even speciation occur, they are often limited by labor-intensive manual techniques[Wassmann et al., 2010]. Current methods for controlled study of microbial adaptation limit the length of time, the depth of collected data, and the breadth of applied environmental conditions. Small idiosyncrasies in manual techniques can have large effects on outcomes; for example, there are significant variations in induced radiation resistances following similar repeated exposure protocols[Alcántara-Díaz et al., 2004; Goldman and Travisano, 2011]. We describe here a project under development to allow rapid cycling of multiple types of microbial environmental exposure. The system allows continuous autonomous monitoring and data collection of both single species and sampled communities, independently and concurrently providing multiple types of controlled environmental pressure (temperature, radiation, chemical presence or absence, and so on) to a microbial community in dynamic response to the ecosystem's current status. When combined with DNA sequencing and extraction, such a controlled environment can cast light on microbial functional development, population dynamics, inter- and intra-species competition, and microbe-environment interaction. The project's goal is to allow rapid, repeatable iteration of studies of both natural and artificial microbial adaptation. As an example, the same system can be used both to increase the pH of a wet soil aliquot over time while periodically sampling it for genetic activity analysis, or to repeatedly expose a culture of

  16. N-15 NMR spectra of naturally abundant nitrogen in soil and aquatic natural organic matter samples of the International Humic Substances Society

    Energy Technology Data Exchange (ETDEWEB)

    Thorn, Kevin A.; Cox, Larry G.

    2009-02-28

    The naturally abundant nitrogen in soil and aquatic NOM samples from the International Humic Substances Society has been characterized by solid state CP/MAS ¹⁵N NMR. Soil samples include humic and fulvic acids from the Elliot soil, Minnesota Waskish peat and Florida Pahokee peat, as well as the Summit Hill soil humic acid and the Leonardite humic acid. Aquatic samples include Suwannee River humic, fulvic and reverse osmosis isolates, Nordic humic and fulvic acids and Pony Lake fulvic acid. Additionally, Nordic and Suwannee River XAD-4 acids and Suwannee River hydrophobic neutral fractions were analyzed. Similar to literature reports, amide/aminoquinone nitrogens comprised the major peaks in the solid state spectra of the soil humic and fulvic acids, along with heterocyclic and amino sugar/terminal amino acid nitrogens. Spectra of aquatic samples, including the XAD-4 acids, contain resolved heterocyclic nitrogen peaks in addition to the amide nitrogens. The spectrum of the nitrogen enriched, microbially derived Pony Lake, Antarctica fulvic acid, appeared to contain resonances in the region of pyrazine, imine and/or pyridine nitrogens, which have not been observed previously in soil or aquatic humic substances by ¹⁵N NMR. Liquid state ¹⁵N NMR experiments were also recorded on the Elliot soil humic acid and Pony Lake fulvic acid, both to examine the feasibility of the techniques, and to determine whether improvements in resolution over the solid state could be realized. For both samples, polarization transfer (DEPT) and indirect detection (¹H–¹⁵N gHSQC) spectra revealed greater resolution among nitrogens directly bonded to protons. The amide/aminoquinone nitrogens could also be observed by direct detection experiments.

  17. Presence of pesticide residues in water, sediment and biological samples taken from aquatic environments in Honduras

    International Nuclear Information System (INIS)

    The objective of this study was to detect the presence of persistent pesticides in water, sediment and biological samples taken from aquatic environments in Honduras during the period 1995-98. Additionally, the LC50 for 2 fungicides and 2 insecticides on post-larval Penaeus vannamei was determined in static water bioassays. A total of 80 water samples, 16 sediment samples and 7 biological samples (fish muscle tissue) were analyzed for detection of organochlorine and organophosphate pesticide residues. The results of sample analyses indicate a widespread contamination of Honduran continental and coastal waters with organochlorine pesticides. Most detections were of low (50 values and were therefore found to be much more toxic to the post-larval shrimp than the fungicides tridemorph and propiconazole. (author)

  18. Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

    DEFF Research Database (Denmark)

    Stief, P.

    2013-01-01

    (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of...... significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii......) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen....

  19. Periphytic photosynthetic stimulation of extracellular enzyme activity in aquatic microbial communities associated with decaying typha litter.

    Science.gov (United States)

    Francoeur, Steven N; Schaecher, Mark; Neely, Robert K; Kuehn, Kevin A

    2006-11-01

    We examined the effect of light on extracellular enzyme activities of periphytic/endogenous microbial assemblages associated with decomposing litter of an emergent macrophyte Typha angustifolia within a small inland wetland in southeastern Michigan. Standing-dead Typha leaf litter was collected, placed into floating wire mesh litter baskets, and submerged in a wetland pool. Enzyme saturation assays were conducted on three occasions following litter submergence (days 9, 28, and 44) to generate saturation curves for the individual enzymes tested and to examine potential differences in enzyme saturation kinetics during microbial colonization and development. Experimental light manipulations were conducted on two occasions during microbial development (days 10 and 29). Short-term (30 min) light exposure significantly increased extracellular beta-glucosidase activity of litter-associated microbial communities. Activities of beta-xylosidase and leucine-aminopeptidase were not stimulated, and stimulation of phosphatase activity was variable. The exact mechanism for increased enzyme activity remains unknown, but it may have been increased pH arising from periphytic algal photosynthesis. These results suggest that extracellular enzyme activity in microbial communities colonizing natural organic substrata may be influenced by light/photosynthesis, as has previously been demonstrated for periphyton communities grown on artificial, inert substrata. Thus, light/photosynthetic mediated stimulation of extracellular enzyme activities may be a common occurrence in microbial communities associated with natural decaying plant litter in wetlands and might engender diurnal patterns in other microbial decay processes (e.g., production, organic matter decomposition, and mineralization). PMID:17082997

  20. Methods for collection and analysis of aquatic biological and microbiological samples

    Science.gov (United States)

    Britton, L.J.; Greeson, P.E.

    1988-01-01

    Chapter A4, methods for collection and analyses of aquatic biological and microbiological samples, contains methods used by the U.S. Geological Survey to collect, preserve, and analyze waters to determine their biological and microbiological properties. Part 1 consists of detailed descriptions of more than 45 individual methods, including those for bacteria, phytoplankton, zooplankton, seston, periphyton, macrophytes, benthic invertebrates, fish and other vertebrates, cellular contents, productivity and bioassay. Each method is summarized, and the applications, interferences, apparatus, reagents, analyses, calculations, reporting of results, precisions, and references are given. Part 2 consists of a glossary. Part 3 is a list of taxonomic references. (USGS)

  1. A supplement to "Methods for collection and analysis of aquatic biological and microbiological samples"

    Science.gov (United States)

    1979-01-01

    The report contains methods used by the U.S. Geological Survey to collect, preserve, and analyze waters to determine their biological and microbiological properties. It supplements, "Methods for Collection and Analysis of Aquatic Biological and Microbiological Samples" (TWRI, Book 5, Chapter A4, 1977, edited by P. E. Greeson, T. A. Ehlke, G. A. Irwin, B. W. Lium, and K. V. Slack). Included in the supplement are 5 new methods, a new section of selected taxonomic references for Ostracoda, and 6 revised methods.

  2. Physiological profiling of indigenous aquatic microbial communities to determine toxic effects of metals

    Energy Technology Data Exchange (ETDEWEB)

    Lehman, R.M.; Colwell, F.S. [Idaho National Engineering and Environmental Lab., Idaho Falls, ID (United States); Garland, J.L. [Dynamac, Kennedy Space Center, FL (United States)

    1997-11-01

    Conventional bioassays for environmental assessment frequently rely on nonindigenous single species. The authors employed an assay in which whole environmental samples were distinguished by the ability of the native heterotrophic microbial communities to oxidize 95 different sole carbon sources generating a community-level physiological profile (CLPP). The average metabolic response (AMR) to the 95 variables defining the CLPP was used in laboratory bioassay studies with copper to construct dose-response curves over several different periods of exposure: 1 h (acute), 1 d, 2 d, and 4 d. The acute dose-response of Snake River bacterioplankton communities measured by AMR was compared to the dose-response of Photobacterium phosphoreum (used in the Microtox test) and a proprietary mixed consortia (used in the Polytox test). In laboratory bioassay studies, CLPP, AMR exhibited acute dose-response behavior over a greater range in copper concentrations and with less variability (per dose) than Microtox and Polytox. The acute sensitivity of CLPP AMR to copper was roughly equal to Microtox and much greater than Polytox. After a longer exposure (1 d) to copper, Snake River communities became more sensitive to copper but no additional effect was observed when the exposure was increases to 2 and 4 d. Snake River communities pre-exposed to copper (1 mg/L) for 4 d prior to acute dose-response experiments showed no difference in AMR with respect to doses up to 10 mg/L, indicating the ability of the assay to detect adaptation. Several metal-contaminated streams in Idaho were used to field validate the CLPP approach for detecting impacts of metals in the environment. The response profiles of the bacterioplankton from two downstream sites receiving metal laden mine drainage were compared to those from reference sites upstream and further downstream of the location receiving the mine drainage.

  3. Characterization of Microbial Population Shifts During Sample Storage

    Directory of Open Access Journals (Sweden)

    HeathJ.Mills

    2012-02-01

    Full Text Available The objective of this study was to determine shifts in the microbial community structure and potential function based on standard Integrated Ocean Drilling Program storage procedures for sediment cores. Standard long-term storage protocols maintain sediment temperature at 4oC for mineralogy, geochemical, and/or geotechnical analysis whereas standard microbiological sampling immediately preserves sediments at -80oC. Storage at 4oC does not take into account populations may remain active over geologic time scales at temperatures similar to storage conditions. Identification of active populations within the stored core would suggest geochemical and geophysical conditions within the core change over time. To test this potential, the metabolically active fraction of the total microbial community was characterized from IODP Expedition 325 Great Barrier Reef sediment cores prior to and following a three-month storage period. Total RNA was extracted from complementary 2, 20, and 40 m below seafloor sediment samples, reverse transcribed to cDNA and then sequenced using 454 FLX sequencing technology, yielding over 14,800 sequences from the six samples. Interestingly, 97.3% of the sequences detected were associated with lineages that changed in detection frequency during the storage period including key biogeochemically relevant lineages associated with nitrogen, iron and sulfur cycling. These lineages have the potential to permanently alter the physical and chemical characteristics of the sediment promoting misleading conclusions about the in situ biogeochemical environment. In addition, the detection of new lineages after storage increases the potential for a wider range of viable lineages within the subsurface that may be underestimated during standard community characterizations.

  4. Environmental DNA sampling protocol - filtering water to capture DNA from aquatic organisms

    Science.gov (United States)

    Laramie, Matthew B.; Pilliod, David S.; Goldberg, Caren S.; Strickler, Katherine M.

    2015-01-01

    Environmental DNA (eDNA) analysis is an effective method of determining the presence of aquatic organisms such as fish, amphibians, and other taxa. This publication is meant to guide researchers and managers in the collection, concentration, and preservation of eDNA samples from lentic and lotic systems. A sampling workflow diagram and three sampling protocols are included as well as a list of suggested supplies. Protocols include filter and pump assembly using: (1) a hand-driven vacuum pump, ideal for sample collection in remote sampling locations where no electricity is available and when equipment weight is a primary concern; (2) a peristaltic pump powered by a rechargeable battery-operated driver/drill, suitable for remote sampling locations when weight consideration is less of a concern; (3) a 120-volt alternating current (AC) powered peristaltic pump suitable for any location where 120-volt AC power is accessible, or for roadside sampling locations. Images and detailed descriptions are provided for each step in the sampling and preservation process.

  5. The determination of environmental levels of uranium and thorium series isotopes and 137Cs in aquatic and terrestrial samples

    International Nuclear Information System (INIS)

    This publication details the analytical methods used at the Freshwater Institute for the radiochemical analysis of aquatic and terrestrial samples. Sample collection methods are described with emphasis on water sampling. A detailed 'Calculations' section contains the mathematical formulae used to determine the absolute activity of each isotope analyzed. 25 refs

  6. Novel use of cavity ring-down spectroscopy to investigate aquatic carbon cycling from microbial to ecosystem scales.

    Science.gov (United States)

    Maher, Damien T; Santos, Isaac R; Leuven, Jasper R F W; Oakes, Joanne M; Erler, Dirk V; Carvalho, Matheus C; Eyre, Bradley D

    2013-11-19

    Development of cavity ring-down spectroscopy (CRDS) has enabled real-time monitoring of carbon stable isotope ratios of carbon dioxide and methane in air. Here we demonstrate that CRDS can be adapted to assess aquatic carbon cycling processes from microbial to ecosystem scales. We first measured in situ isotopologue concentrations of dissolved CO2 ((12)CO2 and (13)CO2) and CH4 ((12)CH4 and (13)CH4) with CRDS via a closed loop gas equilibration device during a survey along an estuary and during a 40 h time series in a mangrove creek (ecosystem scale). A similar system was also connected to an in situ benthic chamber in a seagrass bed (community scale). Finally, a pulse-chase isotope enrichment experiment was conducted by measuring real-time release of (13)CO2 after addition of (13)C enriched phytoplankton to exposed intertidal sediments (microbial scale). Miller-Tans plots revealed complex transformation pathways and distinct isotopic source values of CO2 and CH4. Calculations of δ(13)C-DIC based on CRDS measured δ(13)C-CO2 and published fractionation factors were in excellent agreement with measured δ(13)C-DIC using isotope ratio mass spectroscopy (IRMS). The portable CRDS instrumentation used here can obtain real-time, high precision, continuous greenhouse gas data in lakes, rivers, estuaries and marine waters with less effort than conventional laboratory-based techniques. PMID:24131451

  7. Unexpected toxicity to aquatic organisms of some aqueous bisphenol A samples treated by advanced oxidation processes.

    Science.gov (United States)

    Tišler, Tatjana; Erjavec, Boštjan; Kaplan, Renata; Şenilă, Marin; Pintar, Albin

    2015-01-01

    In this study, photocatalytic and catalytic wet-air oxidation (CWAO) processes were used to examine removal efficiency of bisphenol A from aqueous samples over several titanate nanotube-based catalysts. Unexpected toxicity of bisphenol A (BPA) samples treated by means of the CWAO process to some tested species was determined. In addition, the CWAO effluent was recycled five- or 10-fold in order to increase the number of interactions between the liquid phase and catalyst. Consequently, the inductively coupled plasma mass spectrometry (ICP-MS) analysis indicated higher concentrations of some toxic metals like chromium, nickel, molybdenum, silver, and zinc in the recycled samples in comparison to both the single-pass sample and the photocatalytically treated solution. The highest toxicity of five- and 10-fold recycled solutions in the CWAO process was observed in water fleas, which could be correlated to high concentrations of chromium, nickel, and silver detected in tested samples. The obtained results clearly demonstrated that aqueous samples treated by means of advanced oxidation processes should always be analyzed using (i) chemical analyses to assess removal of BPA and total organic carbon from treated aqueous samples, as well as (ii) a battery of aquatic organisms from different taxonomic groups to determine possible toxicity. PMID:26114268

  8. Carbon Nanotube Integrative Sampler (CNIS) for passive sampling of nanosilver in the aquatic environment.

    Science.gov (United States)

    Shen, Li; Fischer, Jillian; Martin, Jonathan; Hoque, Md Ehsanul; Telgmann, Lena; Hintelmann, Holger; Metcalfe, Chris D; Yargeau, Viviane

    2016-11-01

    Nanomaterials such as nanosilver (AgNP) can be released into the aquatic environment through production, usage, and disposal. Sensitive and cost-effective methods are needed to monitor AgNPs in the environment. This work is hampered by a lack of sensitive methods to detect nanomaterials in environmental matrixes. The present study focused on the development, calibration and application of a passive sampling technique for detecting AgNPs in aquatic matrixes. A Carbon Nanotube Integrative Sampler (CNIS) was developed using multi-walled carbon nanotubes (CNTs) as the sorbent for accumulating AgNPs and other Ag species from water. Sampling rates were determined in the laboratory for different sampler configurations and in different aquatic matrixes. The sampler was field tested at the Experimental Lakes Area, Canada, in lake water dosed with AgNPs. For a configuration of the CNIS consisting of CNTs bound to carbon fiber (i.e. CNT veil) placed in Chemcatcher® housing, the time weighted average (TWA) concentrations of silver estimated from deployments of the sampler in lake mesocosms dosed with AgNPs were similar to the measured concentrations of "colloidal silver" (i.e. <0.22μm in size) in the water column. For a configuration of CNIS consisting of CNTs in loose powder form placed in a custom made housing that were deployed in a whole lake dosed with AgNPs, the estimated TWA concentrations of "CNIS-labile Ag" were similar to the concentrations of total silver measured in the epilimnion of the lake. However, sampling rates for the CNIS in various matrixes are relatively low (i.e. 1-20mL/day), so deployment periods of several weeks are required to detect AgNPs at environmentally relevant concentrations, which can allow biofilms to develop on the sampler and could affect the sampling rates. With further development, this novel sampler may provide a simple and sensitive method for screening for the presence of AgNPs in surface waters. PMID:27343941

  9. A strategy to sample nutrient dynamics across the terrestrial-aquatic interface at NEON sites

    Science.gov (United States)

    Hinckley, E. S.; Goodman, K. J.; Roehm, C. L.; Meier, C. L.; Luo, H.; Ayres, E.; Parnell, J.; Krause, K.; Fox, A. M.; SanClements, M.; Fitzgerald, M.; Barnett, D.; Loescher, H. W.; Schimel, D.

    2012-12-01

    The construction of the National Ecological Observatory Network (NEON) across the U.S. creates the opportunity for researchers to investigate biogeochemical transformations and transfers across ecosystems at local-to-continental scales. Here, we examine a subset of NEON sites where atmospheric, terrestrial, and aquatic observations will be collected for 30 years. These sites are located across a range of hydrological regimes, including flashy rain-driven, shallow sub-surface (perched, pipe-flow, etc), and deep groundwater, which likely affect the chemical forms and quantities of reactive elements that are retained and/or mobilized across landscapes. We present a novel spatial and temporal sampling design that enables researchers to evaluate long-term trends in carbon, nitrogen, and phosphorus biogeochemical cycles under these different hydrological regimes. This design focuses on inputs to the terrestrial system (atmospheric deposition, bulk precipitation), transfers (soil-water and groundwater sources/chemistry), and outputs (surface water, and evapotranspiration). We discuss both data that will be collected as part of the current NEON design, as well as how the research community can supplement the NEON design through collaborative efforts, such as providing additional datasets, including soil biogeochemical processes and trace gas emissions, and developing collaborative research networks. Current engagement with the research community working at the terrestrial-aquatic interface is critical to NEON's success as we begin construction, to ensure that high-quality, standardized and useful data are not only made available, but inspire further, cutting-edge research.

  10. Exploring the use of Citizen Science Phenology Data to Inform the Development of NEON Aquatic Sampling

    Science.gov (United States)

    Henderson, S.; Parker, S.; Roehm, C. L.

    2012-12-01

    The proliferation of citizen science programs and activities in recent years has resulted in data sets at varying geographic scales representing many aspects of environmental science that are having an impact on scientific research. Citizen science programs are uniquely situated at the interface of science and education and therefore, can help advance the needs and goals of both communities. The National Ecological Observatory Network (NEON) has incorporated citizen science as a cornerstone of its Education and Public Engagement Program. Data from its flagship citizen science program, Project BudBurst (budburst.org) is being used to help inform the NEON Aquatic team as it develops sampling strategies. Project BudBurst is a national citizen science initiative designed to engage the public in observations of plant phenology events with the intent of raising awareness of climate change, and create a cadre of informed citizen scientists. Citizen science programs such as Project BudBurst provide the opportunity for students and interested laypersons to actively participate in scientific research. Such programs are important not only from an educational perspective, but because they also enable scientists to broaden the geographic and temporal scale of their observations. Using scientifically vetted protocols, Project BudBurst participants have submitted thousands of observations from all 50 states. The Aquatic team at NEON is using the "First Leaf" and "Leaf Fall" data from Project BudBurst to help inform temporal sampling strategies for aquatic biological measurements. The spatial coverage of the Project BudBurst dataset has allowed us to predict a range of spring and fall dates in each of the NEON domains with which we can coordinate plant, algae, and invertebrate sampling efforts in streams and lakes. Using phenological characteristics combined with the identification of leaf on and leaf off dates, multiple regression and cluster analyses are being performed against

  11. Modeling Microbial Biogeochemistry from Terrestrial to Aquatic Ecosystems Using Trait-Based Approaches

    Science.gov (United States)

    King, E.; Molins, S.; Karaoz, U.; Johnson, J. N.; Bouskill, N.; Hug, L. A.; Thomas, B. C.; Castelle, C. J.; Beller, H. R.; Banfield, J. F.; Steefel, C. I.; Brodie, E.

    2014-12-01

    Currently, there is uncertainty in how climate or land-use-induced changes in hydrology and vegetation will affect subsurface carbon flux, the spatial and temporal distribution of flow and transport, biogeochemical cycling, and microbial metabolic activity. Here we focus on the initial development of a Genome-Enabled Watershed Simulation Capability (GEWaSC), which provides a predictive framework for understanding how genomic information stored in a subsurface microbiome affects biogeochemical watershed functioning, how watershed-scale processes affect microbial function, and how these interactions co-evolve. This multiscale framework builds on a hierarchical approach to multiscale modeling, which considers coupling between defined microscale and macroscale components of a system (e.g., a catchment being defined as macroscale and biogeofacies as microscale). Here, we report our progress in the development of a trait-based modeling approach within a reactive transport framework that simulates coupled guilds of microbes. Guild selection is driven by traits extracted from, and physiological properties inferred from, large-scale assembly of metagenome data. Meta-genomic, -transcriptomic and -proteomic information are also used to complement our existing biogeochemical reaction networks and contributes key reactions where biogeochemical analyses are unequivocal. Our approach models the rate of nutrient uptake and the thermodynamics of coupled electron donors and acceptors for a range of microbial metabolisms including heterotrophs and chemolitho(auto)trophs. Metabolism of exogenous substrates fuels catabolic and anabolic processes, with the proportion of energy used for each based upon dynamic intracellular and environmental conditions. In addition to biomass development, anabolism includes the production of key enzymes, such as nitrogenase for nitrogen fixation or exo-enzymes for the hydrolysis of extracellular polymers. This internal resource partitioning represents a

  12. Efficiency of Different Sampling Tools for Aquatic Macroinvertebrate Collections in Malaysian Streams.

    Science.gov (United States)

    Ghani, Wan Mohd Hafezul Wan Abdul; Rawi, Che Salmah Md; Hamid, Suhaila Abd; Al-Shami, Salman Abdo

    2016-02-01

    This study analyses the sampling performance of three benthic sampling tools commonly used to collect freshwater macroinvertebrates. Efficiency of qualitative D-frame and square aquatic nets were compared to a quantitative Surber sampler in tropical Malaysian streams. The abundance and diversity of macroinvertebrates collected using each tool evaluated along with their relative variations (RVs). Each tool was used to sample macroinvertebrates from three streams draining different areas: a vegetable farm, a tea plantation and a forest reserve. High macroinvertebrate diversities were recorded using the square net and Surber sampler at the forested stream site; however, very low species abundance was recorded by the Surber sampler. Relatively large variations in the Surber sampler collections (RVs of 36% and 28%) were observed for the vegetable farm and tea plantation streams, respectively. Of the three sampling methods, the square net was the most efficient, collecting a greater diversity of macroinvertebrate taxa and a greater number of specimens (i.e., abundance) overall, particularly from the vegetable farm and the tea plantation streams (RVmacroinvertebrate collection in Malaysian streams and gathered assemblages that resulted in the determination of similar biological water quality classes using the Family Biotic Index (FBI) and the Biological Monitoring Working Party (BMWP). However, despite a slightly longer processing time, the square net was more efficient (lowest RV) at collecting samples and more suitable for the collection of macroinvertebrates from deep, fast flowing, wadeable streams with coarse substrates. PMID:27019685

  13. Genomic Sequencing of Single Microbial Cells from Environmental Samples

    Energy Technology Data Exchange (ETDEWEB)

    Ishoey, Thomas; Woyke, Tanja; Stepanauskas, Ramunas; Novotny, Mark; Lasken, Roger S.

    2008-02-01

    Recently developed techniques allow genomic DNA sequencing from single microbial cells [Lasken RS: Single-cell genomic sequencing using multiple displacement amplification, Curr Opin Microbiol 2007, 10:510-516]. Here, we focus on research strategies for putting these methods into practice in the laboratory setting. An immediate consequence of single-cell sequencing is that it provides an alternative to culturing organisms as a prerequisite for genomic sequencing. The microgram amounts of DNA required as template are amplified from a single bacterium by a method called multiple displacement amplification (MDA) avoiding the need to grow cells. The ability to sequence DNA from individual cells will likely have an immense impact on microbiology considering the vast numbers of novel organisms, which have been inaccessible unless culture-independent methods could be used. However, special approaches have been necessary to work with amplified DNA. MDA may not recover the entire genome from the single copy present in most bacteria. Also, some sequence rearrangements can occur during the DNA amplification reaction. Over the past two years many research groups have begun to use MDA, and some practical approaches to single-cell sequencing have been developed. We review the consensus that is emerging on optimum methods, reliability of amplified template, and the proper interpretation of 'composite' genomes which result from the necessity of combining data from several single-cell MDA reactions in order to complete the assembly. Preferred laboratory methods are considered on the basis of experience at several large sequencing centers where >70% of genomes are now often recovered from single cells. Methods are reviewed for preparation of bacterial fractions from environmental samples, single-cell isolation, DNA amplification by MDA, and DNA sequencing.

  14. Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples

    OpenAIRE

    Kudo, Toshiaki; Nakahara, Tomomi; Zhang, Xiaochi; Taniyama, Shigeto; Arakawa, Osamu; Murase, Shinji; Nakata, Hideaki; Oshima, Kenshiro; Suda, Wataru; Kitamura, Keiko; Iida, Toshiya; Oshida, Yumi; Inoue, Tetsushi; Hongoh, Yuichi; Hattori, Masahira

    2014-01-01

    Haloalkaliphilic strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, closely related to Geomicrobium sediminis, were isolated from aquatic samples, and their draft genome sequences were determined. The genome information of these four strains will be useful for studies of their physiology and ecology.

  15. Aquatic invertebrate sampling at selected outfalls in Operable Unit 1082; Technical areas 9, 11, 16 and 22

    Energy Technology Data Exchange (ETDEWEB)

    Cross, S.

    1995-09-01

    The Ecological Studies Team (EST) of ESH-20 at Los Alamos National Laboratory conducted preliminary aquatic sampling at outfalls within Operable Unit 1082 and nearby natural waterways. Eleven outfalls were sampled a total of eighteen times. Three natural waterways (upper Pajarito Canyon, Starmer`s Gulch, and Bulldog Spring) in the vicinity were sampled a total of six times. At most sites, EST recorded hydrological condition, physico-chemical parameters, wildlife uses, and vegetation. At each outfall with water and each natural waterway, EST collected an aquatic invertebrate sample which was analyzed by taxa composition, Wilhm`s biodiversity index, the community tolerance quotient (CTQ), and density. The physico-chemical parameters at most outfalls and natural waterways fell within the normal range of natural waters in the area. However, the outfalls are characterized by low biodiversity and severely stressed communities composed of a restricted number of taxa. The habitat at the other outfalls could probably support well-developed aquatic communities if sufficient water was available. At present, the hydrology at these outfalls is too slight and/or sporadic to support such a community in the foreseeable future. In contrast to the outfalls, the natural waterways of the area had greater densities of aquatic invertebrates, higher biodiversities, and lower CTQs.

  16. Experimental Investigation Of Microbially Induced Corrosion Of Test Samples And Effect Of Self-assembled Hydrophobic Monolayers. Exposure Of Test Samples To Continuous Microbial Cultures, Chemical Analysis, And Biochemical Studies

    CERN Document Server

    Laurinavichius, K S

    1998-01-01

    Experimental Investigation Of Microbially Induced Corrosion Of Test Samples And Effect Of Self-assembled Hydrophobic Monolayers. Exposure Of Test Samples To Continuous Microbial Cultures, Chemical Analysis, And Biochemical Studies

  17. Molecular ecology of aquatic microbes

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-12-31

    Abstracts of reports are presented from a meeting on Molecular Ecology of Aquatic Microbes. Topics included: opportunities offered to aquatic ecology by molecular biology; the role of aquatic microbes in biogeochemical cycles; characterization of the microbial community; the effect of the environment on aquatic microbes; and the targeting of specific biological processes.

  18. Comparison of sampling methods for the assessment of indoor microbial exposure

    DEFF Research Database (Denmark)

    Frankel, M; Timm, Michael; Hansen, E W; Madsen, A M

    2012-01-01

    Abstract Indoor microbial exposure has been related to allergy and respiratory disorders. However, the lack of standardized sampling methodology is problematic when investigating dose-response relationships between exposure and health effects. In this study, different sampling methods were compared...... with those from GSP. Settled dust from the EDC was most representative of airborne dust and may thus be considered as a surrogate for the assessment of indoor airborne microbial exposure. PRACTICAL IMPLICATIONS: Significant discrepancies between sampling methods regarding indoor microbial exposures...... regarding their assessment of microbial exposures, including culturable fungi and bacteria, endotoxin, as well as the total inflammatory potential (TIP) of dust samples from Danish homes. The Gesamtstaubprobenahme (GSP) filter sampler and BioSampler were used for sampling of airborne dust, whereas the dust...

  19. Portable System for Microbial Sample Preparation and Oligonucleotide Microarray Analysis

    OpenAIRE

    Bavykin, Sergei G.; Akowski, James P.; Zakhariev, Vladimir M.; Barsky, Viktor E.; Perov, Alexander N.; Mirzabekov, Andrei D.

    2001-01-01

    We have developed a three-component system for microbial identification that consists of (i) a universal syringe-operated silica minicolumn for successive DNA and RNA isolation, fractionation, fragmentation, fluorescent labeling, and removal of excess free label and short oligonucleotides; (ii) microarrays of immobilized oligonucleotide probes for 16S rRNA identification; and (iii) a portable battery-powered device for imaging the hybridization of fluorescently labeled RNA fragments with the ...

  20. Microbial decomposition in aquatic environments: combined process of extracellular enzyme activity and substrate uptake

    International Nuclear Information System (INIS)

    The aim of this study was to define a model for the coupling between extracellular enzyme activity and substrate uptake by bacterial populations in natural waters. The balance between uptake of leucine and extracellular hydrolytic production of leucine from a peptide model substrate was investigated in a combined fluorescence-radiotracer experiment with [3H] leucine as a marker for the leucine pool and L-leucine-4-methyl-7-coumarinylamide (Leu-MCA) as a marker for the pool of dissolved peptide substrates. Results show that at low concentrations of the model substrate the input and uptake processes of leucine are nearly balanced, whereas at high concentrations of the model substrate much more leucine is liberated than taken up. In addition, samples from one polluted and one less polluted station in the Kiel Fjord were investigated for their extracellular enzymatic and uptake properties in an annual cycle. Calculated on an annual average basis, turnover rates were ca. nine times higher than hydrolysis rates at the polluted station and ca., five times higher at the less polluted station. From the described model, this would mean that the relative fraction of polymers within the total dissolved organic carbon pool (with regard to the substrate combination dissolved protein-leucine) is about twice that at the polluted than at the less polluted station

  1. Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments (Final Report)

    Science.gov (United States)

    This technical paper provides defensible approximations for what the depth of the biologically active zone, or “biotic zone” is within certain environments. The methods used in this study differ somewhat between Part 1 (Terrestrial Biotic Zone) and Part 2 (Aquatic Biotic Zone). ...

  2. Sampling design for early detection of aquatic invasive species in Great Lakes ports

    Science.gov (United States)

    We evaluated a pilot adaptive monitoring program for aquatic invasive species (AIS) early detection in Lake Superior. The monitoring program is designed to detect newly-introduced fishes, and encompasses the lake’s three major ports (Duluth-Superior, Sault Ste. Marie, Thund...

  3. Characterization of Chironomidae (Diptera) surface-floating pupal exuviae sample sort time from coastal tropical aquatic systems.

    Science.gov (United States)

    Kranzfelder, Petra; Ferrington, Leonard C

    2015-03-01

    Many studies either ignore chironomids or only identify specimens to subfamily or tribe due to the associated difficulty and high cost with processing and identifying larvae. An efficient form of sampling chironomids involves collections of surface-floating pupal exuviae (SFPE). SFPE sample sorting has been shown to be more time efficient than traditional dip-net methods in temperate urban and peri-urban streams. However, no published studies have tested the time efficiency of SFPE sample sorting from coastal tropical aquatic systems. We calculated sort times for SFPE samples collected from a coastal tropical stream and an estuary and used multiple linear regression analysis to quantify the relationship between sample sort time and number of specimens, average body length of specimens, and dry weight of sample residue. The average amount of time required to sort very small samples was 69.3 min, while moderate samples averaged 85.6 min and large samples averaged 153.5 min. However, on average, small samples were nine times more time consuming per specimen than large samples. Additionally, dry weight of small-sized residue and the number of specimens contributed significantly to sort time. Therefore, we recommend collecting larger samples, which can be achieved by sampling for 20 min over 200-m reaches for stream sites and 500- to 1,000-m reaches for riverine and estuarine sites. Also, we suggest collecting during periods of low wave action and disturbance by boat wake to reduce the amount of sample residue. This research will enhance project planning and budgeting of future studies using the SFPE method to monitor coastal tropical aquatic systems. PMID:25647801

  4. Non-destructive sampling of rock-dwelling microbial communities using sterile adhesive tape.

    Science.gov (United States)

    Cutler, Nick A; Oliver, Anna E; Viles, Heather A; Whiteley, Andrew S

    2012-12-01

    Building stone provides a habitat for an array of microorganisms, many of which have been demonstrated to have a deleterious effect on the appearance and/or structural integrity of stone masonry. It is essential to understand the composition and structure of stone-dwelling (lithobiontic) microbial communities if successful stone conservation strategies are to be applied, particularly in the face of global environmental change. Ideally, the techniques used to sample such assemblages should be non-destructive due to the sensitive conservation status of many stone buildings. This paper quantitatively assesses the performance of sterile adhesive tape as a non-destructive sampling technique and compares the results of tape sampling with an alternative, destructive, sampling method. We used DNA fingerprinting (TRFLP) to characterise the algal, fungal and bacterial communities living on a stone slab. Our results demonstrate that tape sampling may be used to collect viable quantities of microbial DNA from environmental samples. This technique is ideally suited to the sampling of microbial biofilms, particularly when these communities are dominated by green algae. It provides a good approximation of total community diversity (i.e. the aggregate diversity of epilithic and endolithic communities). Tape sampling is straightforward, rapid and cost effective. When combined with molecular analytical techniques, this sampling method has the potential to make a major contribution to efforts to understand the structure of lithobiontic microbial communities and our ability to predict the response of such communities to future environmental change. PMID:23022426

  5. PhyloChip™ microarray comparison of sampling methods used for coral microbial ecology.

    Science.gov (United States)

    Kellogg, Christina A; Piceno, Yvette M; Tom, Lauren M; DeSantis, Todd Z; Zawada, David G; Andersen, Gary L

    2012-01-01

    Interest in coral microbial ecology has been increasing steadily over the last decade, yet standardized methods of sample collection still have not been defined. Two methods were compared for their ability to sample coral-associated microbial communities: tissue punches and foam swabs, the latter being less invasive and preferred by reef managers. Four colonies of star coral, Montastraea annularis, were sampled in the Dry Tortugas National Park (two healthy and two with white plague disease). The PhyloChip™ G3 microarray was used to assess microbial community structure of amplified 16S rRNA gene sequences. Samples clustered based on methodology rather than coral colony. Punch samples from healthy and diseased corals were distinct. All swab samples clustered closely together with the seawater control and did not group according to the health state of the corals. Although more microbial taxa were detected by the swab method, there is a much larger overlap between the water control and swab samples than punch samples, suggesting some of the additional diversity is due to contamination from water absorbed by the swab. While swabs are useful for noninvasive studies of the coral surface mucus layer, these results show that they are not optimal for studies of coral disease. PMID:22085912

  6. Membrane biofouling characterization: effects of sample preparation procedures on biofilm structure and the microbial community

    KAUST Repository

    Xue, Zheng

    2014-07-15

    Ensuring the quality and reproducibility of results from biofilm structure and microbial community analysis is essential to membrane biofouling studies. This study evaluated the impacts of three sample preparation factors (ie number of buffer rinses, storage time at 4°C, and DNA extraction method) on the downstream analysis of nitrifying biofilms grown on ultrafiltration membranes. Both rinse and storage affected biofilm structure, as suggested by their strong correlation with total biovolume, biofilm thickness, roughness and the spatial distribution of EPS. Significant variations in DNA yields and microbial community diversity were also observed among samples treated by different rinses, storage and DNA extraction methods. For the tested biofilms, two rinses, no storage and DNA extraction with both mechanical and chemical cell lysis from attached biofilm were the optimal sample preparation procedures for obtaining accurate information about biofilm structure, EPS distribution and the microbial community. © 2014 © 2014 Taylor & Francis.

  7. Membrane biofouling characterization: effects of sample preparation procedures on biofilm structure and the microbial community.

    Science.gov (United States)

    Xue, Zheng; Lu, Huijie; Liu, Wen-Tso

    2014-01-01

    Ensuring the quality and reproducibility of results from biofilm structure and microbial community analysis is essential to membrane biofouling studies. This study evaluated the impacts of three sample preparation factors (ie number of buffer rinses, storage time at 4°C, and DNA extraction method) on the downstream analysis of nitrifying biofilms grown on ultrafiltration membranes. Both rinse and storage affected biofilm structure, as suggested by their strong correlation with total biovolume, biofilm thickness, roughness and the spatial distribution of EPS. Significant variations in DNA yields and microbial community diversity were also observed among samples treated by different rinses, storage and DNA extraction methods. For the tested biofilms, two rinses, no storage and DNA extraction with both mechanical and chemical cell lysis from attached biofilm were the optimal sample preparation procedures for obtaining accurate information about biofilm structure, EPS distribution and the microbial community. PMID:25115516

  8. DNA-based determination of microbial biomass suitable for frozen and alkaline soil samples

    Science.gov (United States)

    Semenov, Mikhail; Blagodatskaya, Evgeniya; Kogut, Boris; Kuzyakov, Yakov

    2015-04-01

    Microbial biomass is a sensitive indicator of changes due to soil management, long before other basic soil measures such as Corg or Ntot. Improvement of methods for determination of microbial biomass still remains relevant, and these methods should be correctly applicable for the soil samples being in various state. This study was designed to demonstrate the applicability of DNA-based determination of microbial biomass under conditions when the common basic approaches, namely chloroform fumigation-extraction (CFE) and substrate-induced respiration (SIR), are restricted by certain soil properties, experimental designs or research needs, e.g. in frozen, alkaline or carbonaceous soils. We compared microbial biomass determined by CFE, SIR and by DNA approaches in the range of neutral and slightly alkaline Chernozem and alkaline Calcisol of semi-arid climate. The samples of natural and agricultural ecosystems were taken throughout the soil profile from long-term static field experiments in the European part of Russia. Extraction and subsequent quantification of dsDNA revealed a strong agreement with SIR and CFE when analyzing the microbial biomass content in soils with pH below 8. The conversion factors (FDNA) from dsDNA to SIR-Cmic (5.10) and CFE-Cmic (4.41) were obtained by testing a range of the soil samples down to 1.5 m depth and indicated a good reproducibility of DNA-based estimations. In alkaline soils (pH > 8), CO2 retention due to alkaline pH and exchange with carbonates resulted in a strong underestimation of soil microbial biomass by SIR or even in the absence of any CO2 emission, especially at low absolute values of microbial biomass in subsoil. Correction of CO2 efflux by theoretical retention pH-dependent factors caused overestimation of SIR-biomass. In alkaline conditions, DNA extraction proved to be a reliable alternative for microbial biomass determination. Moreover, the DNA-based approach can serve as an excellent alternative enabling correct

  9. Phosphatase Activity of Microbial Populations in Different Milk Samples in Relation to Protein and Carbohydrate Content

    Directory of Open Access Journals (Sweden)

    Sosanka Protim SANDILYA

    2014-12-01

    Full Text Available Cattle milk is a rich source of protein, carbohydrate, vitamins, minerals and all other major and micro nutrients. At a moderate pH, milk is an excellent media for the growth of microbes and thus, intake of raw milk is precarious. In this study, attempt was made for a qualitative study of eight raw milk samples of different varieties of cow and goat milk, collected from Jorhat district of Assam, India, on the basis of nutritional value and microbial population. The highest microbial population was found in the milk collected from cross hybrid variety of cow, whereas microbial contamination was the least in Jersey cow milk. Samples of C1 (Jersey cow variety showed presence of the highest amount of protein and carbohydrate content as compared to the others. Almost all the milk samples showed positive acid and alkaline phosphatase activity. Maximum acid phosphatase activity was observed in cross hybrid cow milk, whereas local cow milk exhibited the highest alkaline phosphatase activity. Phosphatase activity did not show any co-relationship with microbial population of the milk samples. Similarly, the protein and carbohydrate content of the samples did not have any significant impact on both acid and alkaline phosphatase activity.

  10. Phosphatase Activity of Microbial Populations in Different Milk Samples in Relation to Protein and Carbohydrate Content

    OpenAIRE

    Sosanka Protim SANDILYA; Anuradha GOGOI; Pinky Moni BHUYAN; Dip Kumar GOGOI

    2014-01-01

    Cattle milk is a rich source of protein, carbohydrate, vitamins, minerals and all other major and micro nutrients. At a moderate pH, milk is an excellent media for the growth of microbes and thus, intake of raw milk is precarious. In this study, attempt was made for a qualitative study of eight raw milk samples of different varieties of cow and goat milk, collected from Jorhat district of Assam, India, on the basis of nutritional value and microbial population. The highest microbial populatio...

  11. Rapid comparison and correlation analysis among massive number of microbial community samples based on MDV data model

    OpenAIRE

    Su, Xiaoquan; Hu, Jianqiang; Huang, Shi; Ning, Kang

    2014-01-01

    The research in microbial communities would potentially impact a vast number of applications in “bio”-related disciplines. Large-scale analyses became a clear trend in microbial community studies, thus it is increasingly important to perform efficient and in-depth data mining for insightful biological principles from large number of samples. However, as microbial communities are from different sources and of different structures, comparison and data-mining from large number of samples become ...

  12. Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

    OpenAIRE

    Gemma Henderson; Faith Cox; Sandra Kittelmann; Vahideh Heidarian Miri; Michael Zethof; Noel, Samantha J.; Garry C Waghorn; Janssen, Peter H.

    2013-01-01

    Molecular microbial ecology techniques are widely used to study the composition of the rumen microbiota and to increase understanding of the roles they play. Therefore, sampling and DNA extraction methods that result in adequate yields of microbial DNA that also accurately represents the microbial community are crucial. Fifteen different methods were used to extract DNA from cow and sheep rumen samples. The DNA yield and quality, and its suitability for downstream PCR amplifications varied co...

  13. Activity and growth of microbial populations in pressurized deep-sea sediment and animal gut samples.

    Science.gov (United States)

    Tabor, P S; Deming, J W; Ohwada, K; Colwell, R R

    1982-08-01

    Benthic animals and sediment samples were collected at deep-sea stations in the northwest (3,600-m depth) and southeast (4,300- and 5200-m depths) Atlantic Ocean. Utilization rates of [14C]glutamate (0.67 to 0.74 nmol) in sediment suspensions incubated at in situ temperatures and pressures (3 to 5 degrees C and 360, 430, or 520 atmospheres) were relatively slow, ranging from 0.09 to 0.39 nmol g-1 day-1, whereas rates for pressurized samples of gut suspensions varied widely, ranging from no detectable activity to a rapid rate of 986 nmol g-1 day-1. Gut flora from a holothurian specimen and a fish demonstrated rapid, barophilic substrate utilization, based on relative rates calculated for pressurized samples and samples held at 1 atm (101.325 kPa). Substrate utilization by microbial populations in several sediment samples was not inhibited by in situ pressure. Deep-sea pressures did not restrict growth, measured as doubling time, of culturable bacteria present in a northwest Atlantic sediment sample and in a gut suspension prepared from an abyssal scavenging amphipod. From the results of this study, it was concluded that microbial populations in benthic environments can demonstrate significant metabolic activity under deep-ocean conditions of temperature and pressure. Furthermore, rates of microbial activity in the guts of benthic macrofauna are potentially more rapid than in surrounding deep-sea sediments. PMID:6127054

  14. Community-Level Physiological Profiling of Microbial Communities in Constructed Wetlands: Effects of Sample Preparation.

    Science.gov (United States)

    Button, Mark; Weber, Kela; Nivala, Jaime; Aubron, Thomas; Müller, Roland Arno

    2016-03-01

    Community-level physiological profiling (CLPP) using BIOLOG® EcoPlates™ has become a popular method for characterizing and comparing the functional diversity, functional potential, and metabolic activity of heterotrophic microbial communities. The method was originally developed for profiling soil communities; however, its usage has expanded into the fields of ecotoxicology, agronomy, and the monitoring and profiling of microbial communities in various wastewater treatment systems, including constructed wetlands for water pollution control. When performing CLPP on aqueous samples from constructed wetlands, a wide variety of sample characteristics can be encountered and challenges may arise due to excessive solids, color, or turbidity. The aim of this study was to investigate the impacts of different sample preparation methods on CLPP performed on a variety of aqueous samples covering a broad range of physical and chemical characteristics. The results show that using filter paper, centrifugation, or settling helped clarify samples for subsequent CLPP analysis, however did not do so as effectively as dilution for the darkest samples. Dilution was able to provide suitable clarity for the darkest samples; however, 100-fold dilution significantly affected the carbon source utilization patterns (CSUPs), particularly with samples that were already partially or fully clear. Ten-fold dilution also had some effect on the CSUPs of samples which were originally clear; however, the effect was minimal. Based on these findings, for this specific set of samples, a 10-fold dilution provided a good balance between ease of use, sufficient clarity (for dark samples), and limited effect on CSUPs. The process and findings outlined here can hopefully serve future studies looking to utilize CLPP for functional analysis of microbial communities and also assist in comparing data from studies where different sample preparation methods were utilized. PMID:26563413

  15. Passive sampling of pharmaceuticals and personal care products in aquatic environments

    OpenAIRE

    Zdena Křesinová; Klára Petrů; Ondřej Lhotský; Torgeir Rodsand; Tomáš Cajthaml

    2016-01-01

    Passive sampling is a rapidly developing technology, which is widely used for the monitoring of pollutants in different environments. Passive sampling offers significant advantages over traditional grab sampling. In the present review, the authors summarize the current literature on the methods of passive sampling used in the environmental monitoring of polar or semi-polar compounds in aqueous matrices. Methods of calibrating, design and deployment of samplers are also discussed. A major focu...

  16. Molecular analysis of microbial diversity in corrosion samples from energy transmission towers.

    Science.gov (United States)

    Oliveira, Valéria M; Lopes-Oliveira, Patrícia F; Passarini, Michel R Z; Menezes, Claudia B A; Oliveira, Walter R C; Rocha, Adriano J; Sette, Lara D

    2011-04-01

    Microbial diversity in corrosion samples from energy transmission towers was investigated using molecular methods. Ribosomal DNA fragments were used to assemble gene libraries. Sequence analysis indicated 10 bacterial genera within the phyla Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes. In the two libraries generated from corroded screw-derived samples, the genus Acinetobacter was the most abundant. Acinetobacter and Clostridium spp. dominated, with similar percentages, in the libraries derived from corrosion scrapings. Fungal clones were affiliated with 14 genera belonging to the phyla Ascomycota and Basidiomycota; of these, Capnobotryella and Fellomyces were the most abundant fungi observed. Several of the microorganisms had not previously been associated with biofilms and corrosion, reinforcing the need to use molecular techniques to achieve a more comprehensive assessment of microbial diversity in environmental samples. PMID:21563009

  17. Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community

    Science.gov (United States)

    Tapio, Ilma; Shingfield, Kevin J.; McKain, Nest; Bonin, Aurélie; Fischer, Daniel; Bayat, Ali R.; Vilkki, Johanna; Taberlet, Pierre; Snelling, Timothy J.; Wallace, R. John

    2016-01-01

    Microbial community analysis was carried out on ruminal digesta obtained directly via rumen fistula and buccal fluid, regurgitated digesta (bolus) and faeces of dairy cattle to assess if non-invasive samples could be used as proxies for ruminal digesta. Samples were collected from five cows receiving grass silage based diets containing no additional lipid or four different lipid supplements in a 5 x 5 Latin square design. Extracted DNA was analysed by qPCR and by sequencing 16S and 18S rRNA genes or the fungal ITS1 amplicons. Faeces contained few protozoa, and bacterial, fungal and archaeal communities were substantially different to ruminal digesta. Buccal and bolus samples gave much more similar profiles to ruminal digesta, although fewer archaea were detected in buccal and bolus samples. Bolus samples overall were most similar to ruminal samples. The differences between both buccal and bolus samples and ruminal digesta were consistent across all treatments. It can be concluded that either proxy sample type could be used as a predictor of the rumen microbial community, thereby enabling more convenient large-scale animal sampling for phenotyping and possible use in future animal breeding programs aimed at selecting cattle with a lower environmental footprint. PMID:26986467

  18. Passive Sampling in Regulatory Chemical Monitoring of Nonpolar Organic Compounds in the Aquatic Environment

    DEFF Research Database (Denmark)

    Booij, Kees; Robinson, Craig D; Burgess, Robert M;

    2016-01-01

    in water, but this definition has little scientific basis. Insufficient quality control is a present weakness of passive sampling in water. Laboratory performance studies and the development of standardized methods are needed to improve data quality and to encourage the use of passive sampling by...... shortcomings of passive sampling are assessed for water, sediments, and biota. Passive water sampling is a suitable technique for measuring concentrations of freely dissolved compounds. This method yields results that are incompatible with the EU's quality standard definition in terms of total concentrations...... commercial laboratories and monitoring agencies. Successful prediction of bioaccumulation based on passive sampling is well documented for organisms at the lower trophic levels, but requires more research for higher levels. Despite the existence of several knowledge gaps, passive sampling presently is the...

  19. Passive Sampling in Regulatory Chemical Monitoring of Nonpolar Organic Compounds in the Aquatic Environment

    OpenAIRE

    Booij, Kees; Robinson, Craig D.; Burgess, Robert M.; Mayer, Philipp; Roberts, Cindy A; Ahrens, Lutz; Allan, Ian J; Brant, Jan; Jones, Lisa; Kraus, Uta R.; Larsen, Martin M.; Lepom, Peter; Petersen, Jördis; Pröfrock, Daniel; Roose, Patrick

    2016-01-01

    We reviewed compliance monitoring requirements in the European Union, the United States, and the Oslo-Paris Convention for the protection of the marine environment of the North-East Atlantic, and evaluated if these are met by passive sampling methods for nonpolar compounds. The strengths and shortcomings of passive sampling are assessed for water, sediments, and biota. Passive water sampling is a suitable technique for measuring concentrations of freely dissolved compounds. This method yields...

  20. A Novel Analysis Method for Paired-Sample Microbial Ecology Experiments

    Science.gov (United States)

    Vora, Suhani; Techtmann, Stephen M.; Fortney, Julian L.; Bastidas-Oyanedel, Juan R.; Rodríguez, Jorge; Hazen, Terry C.; Alm, Eric J.

    2016-01-01

    Many microbial ecology experiments use sequencing data to measure a community’s response to an experimental treatment. In a common experimental design, two units, one control and one experimental, are sampled before and after the treatment is applied to the experimental unit. The four resulting samples contain information about the dynamics of organisms that respond to the treatment, but there are no analytical methods designed to extract exactly this type of information from this configuration of samples. Here we present an analytical method specifically designed to visualize and generate hypotheses about microbial community dynamics in experiments that have paired samples and few or no replicates. The method is based on the Poisson lognormal distribution, long studied in macroecology, which we found accurately models the abundance distribution of taxa counts from 16S rRNA surveys. To demonstrate the method’s validity and potential, we analyzed an experiment that measured the effect of crude oil on ocean microbial communities in microcosm. Our method identified known oil degraders as well as two clades, Maricurvus and Rhodobacteraceae, that responded to amendment with oil but do not include known oil degraders. Our approach is sensitive to organisms that increased in abundance only in the experimental unit but less sensitive to organisms that increased in both control and experimental units, thus mitigating the role of “bottle effects”. PMID:27152415

  1. Microbial activity in subsurface samples before and during nitrate-enhanced bioremediation

    International Nuclear Information System (INIS)

    A study was conducted to determine the microbial activity at a site contaminated with JP-4 jet fuel before and during nitrate-enhanced bioremediation. Samples at three depths from six different locations were collected aseptically under anaerobic conditions before and during treatment. Cores were located in or close to the source of contamination, downgradient of the source, or outside the zone of contamination. Parameters for microbial characterization included (1) viable counts of aerobic heterotrophic, JP-4 degrading, and oligotrophic bacteria; (2) the most probable number (MPN) of aerobic and anaerobic protozoa; (3) the MPN of total denitrifiers; and (4) the MPN of denitrifiers in hydrocarbon-amended microcosms. The results indicate that the total number of denitrifiers increased by an order of magnitude during nitrate-enhanced bioremediation in most samples. The number of total heterotrophs and JP-4-degrading microorganisms growing aerobically also increased. In addition, the first anaerobic protozoa associated with hydrocarbon-contaminated subsurface materials were detected

  2. The Survey of Microbial Quality of the Dry Sample, Extract and Brewing of some Medicinal Plants

    Directory of Open Access Journals (Sweden)

    Razieh VALIASILL

    2014-12-01

    Full Text Available Medicinal plants may be exposed to a wide range of microbial contamination during pre- and post- harvest stages and they can present high microbial counts. In this study, the microbial quality of 44 samples of dry herbs namely: mint (Menthaspp., lemon balm (Melissa officinalis, summer savory (Satureja hortensis, zataria (Zataria multiflora, Indian valerian (Valeriana wallichii, their brewing and extracts were analyzed. Total count using plate count agar medium (PCA, coliform count by Violet Red Bile Agar (VRBL, Enterobacteriacea by Violet Red Bile Glucose (VRBG were evaluated. Medium Baird-Parker agar (BP medium and Tryptone Bile X-Gluc (TBX medium were used for the isolation and enumeration of Staphylococcus aurous and E. coli spp. respectively. Furthermore, Xylose Lysine Deoxycholate agar medium (XLD and Bismuth Sulfite Agar medium(BSA were used for detection of Salmonella spp. Fungal and mold contamination was assessed using yeast extract glucose chloramphenicol agar. The results showed that the contamination of the samples with total count (100% and Enterobacteriaceae (85%, total coliform (83%, mold and yeast (98% and E. coli ssp. (2.27 were detected, including in the study samples the absence of pathogenic bacteria like Staphylococcus aurous, Salmonella spp. Moreover, the extract had a lower microbial load in comparison to dry herb samples. Also, the lowest and the highest of contamination rates were observed for Indian valerian and zataria, respectively. According to the results, there is a need to control the environmental conditions and improve hygiene in the production process; even more, it is recommended to choose a suitable decontamination method for disinfection during packing medicinal plants and during post-packing manipulation and transport.

  3. Microbial community analysis of shallow subsurface samples with PCR-DGGE

    Energy Technology Data Exchange (ETDEWEB)

    Itaevaara, M.; Suihko, M.-L.; Kapanen, A.; Piskonen, R.; Juvonen, R. [VTT Biotechnology, Espoo (Finland)

    2005-11-15

    This work is part of the site investigations for the disposal of spent nuclear fuel in Olkiluoto bedrock. The purpose of the research was to study the suitability of PCR-DGGE (polymerase chain reaction - denaturing gradient gel electrophoresis) method for monitoring of hydrogeomicrobiology of Olkiluoto repository site. PCR-DGGE method has been applied for monitoring microbial processes in several applications. The benefit of the method is that microorganisms are not cultivated but the presence of microbial communities can be monitored by direct DNA extractions from the environmental samples. Partial 16SrDNA gene sequence is specifically amplified by PCR (polymerase chain reaction) which detect bacteria as a group. The gene sequences are separated in DGGE, and the nucleotide bands are then cut out, extracted, sequenced and identified by the genelibraries by e.g. Blast program. PCR-DGGE method can be used to detect microorganisms which are present abundantly in the microbial communities because small quantities of genes cannot be separated reliably. However, generally the microorganisms involved in several environmental processes are naturally enriched and present as major population. This makes it possible to utilize PCRDGGE as a monitoring method. In this study, we studied the structure of microbial communities in ten ground water samples originating from Olkiluoto. Two universal bacterial primer sets were compared which amplified two different regions of the 16SrDNA gene. The longer sequence amplified resulted in fewer bands in DGGE, in addition there were problems with purification of the sequences after DGGE. The shorter sequence gave more bands in DGGE and more clear results without any amplification problems. Comparison of the sequences from the gene-libraries resulted in the detection of the same species by both primer sets, in addition some different species were detected. Several species were anaerobic bacteria, such as acetogenic and sulphate reducing

  4. Microbial community analysis of shallow subsurface samples with PCR-DGGE

    International Nuclear Information System (INIS)

    This work is part of the site investigations for the disposal of spent nuclear fuel in Olkiluoto bedrock. The purpose of the research was to study the suitability of PCR-DGGE (polymerase chain reaction - denaturing gradient gel electrophoresis) method for monitoring of hydrogeomicrobiology of Olkiluoto repository site. PCR-DGGE method has been applied for monitoring microbial processes in several applications. The benefit of the method is that microorganisms are not cultivated but the presence of microbial communities can be monitored by direct DNA extractions from the environmental samples. Partial 16SrDNA gene sequence is specifically amplified by PCR (polymerase chain reaction) which detect bacteria as a group. The gene sequences are separated in DGGE, and the nucleotide bands are then cut out, extracted, sequenced and identified by the genelibraries by e.g. Blast program. PCR-DGGE method can be used to detect microorganisms which are present abundantly in the microbial communities because small quantities of genes cannot be separated reliably. However, generally the microorganisms involved in several environmental processes are naturally enriched and present as major population. This makes it possible to utilize PCRDGGE as a monitoring method. In this study, we studied the structure of microbial communities in ten ground water samples originating from Olkiluoto. Two universal bacterial primer sets were compared which amplified two different regions of the 16SrDNA gene. The longer sequence amplified resulted in fewer bands in DGGE, in addition there were problems with purification of the sequences after DGGE. The shorter sequence gave more bands in DGGE and more clear results without any amplification problems. Comparison of the sequences from the gene-libraries resulted in the detection of the same species by both primer sets, in addition some different species were detected. Several species were anaerobic bacteria, such as acetogenic and sulphate reducing

  5. Treatability studies on different refinery wastewater samples using high-throughput microbial electrolysis cells (MECs)

    KAUST Repository

    Ren, Lijiao

    2013-05-01

    High-throughput microbial electrolysis cells (MECs) were used to perform treatability studies on many different refinery wastewater samples all having appreciably different characteristics, which resulted in large differences in current generation. A de-oiled refinery wastewater sample from one site (DOW1) produced the best results, with 2.1±0.2A/m2 (maximum current density), 79% chemical oxygen demand removal, and 82% headspace biological oxygen demand removal. These results were similar to those obtained using domestic wastewater. Two other de-oiled refinery wastewater samples also showed good performance, with a de-oiled oily sewer sample producing less current. A stabilization lagoon sample and a stripped sour wastewater sample failed to produce appreciable current. Electricity production, organics removal, and startup time were improved when the anode was first acclimated to domestic wastewater. These results show mini-MECs are an effective method for evaluating treatability of different wastewaters. © 2013 Elsevier Ltd.

  6. Probing oral microbial functionality--expression of spxB in plaque samples.

    Directory of Open Access Journals (Sweden)

    Lin Zhu

    Full Text Available The Human Oral Microbiome Database (HOMD provides an extensive collection of genome sequences from oral bacteria. The sequence information is a static snapshot of the microbial potential of the so far sequenced species. A major challenge is to connect the microbial potential encoded in the metagenome to an actual function in the in vivo oral biofilm. In the present study we took a reductionist approach and identified a considerably conserved metabolic gene, spxB to be encoded by a majority of oral streptococci using the HOMD metagenome information. spxB encodes the pyruvate oxidase responsible for the production of growth inhibiting amounts of hydrogen peroxide (H2O2 and has previously been shown as important in the interspecies competition in the oral biofilm. Here we demonstrate a strong correlation of H2O2 production and the presence of the spxB gene in dental plaque. Using Real-Time RT PCR we show that spxB is expressed in freshly isolated human plaque samples from several donors and that the expression is relative constant when followed over time in one individual. This is the first demonstration of an oral community encoded gene expressed in vivo suggesting a functional role of spxB in oral biofilm physiology. This also demonstrates a possible strategy to connect the microbial potential of the metagenome to its functionality in future studies by identifying similar highly conserved genes in the oral microbial community.

  7. Introducing Aquatic Biology

    OpenAIRE

    Kinne, Otto; Browman, Howard I.; Seaman, Matthias

    2007-01-01

    The Inter-Research Science Center (IR) journals Marine Ecology Progress Series (MEPS) and Aquatic Microbial Ecology (AME) have been receiving increasing numbers of high-quality manuscripts that are principally biological, rather than ecological. With regret, we have had to turn these submissions away. Also, leading limnologists have for many years suggested that IR should provide an outlet for top quality articles on freshwater biology and ecology. Aquatic Biology (...

  8. Understanding microbial/DOM interactions using fluorescence and flow cytometry

    Science.gov (United States)

    Fox, Bethany; Rushworth, Cathy; Attridge, John; Anesio, Alexandre; Cox, Tim; Reynolds, Darren

    2015-04-01

    The transformation and movement of dissolved organic carbon (DOC) within freshwater aquatic systems is an important factor in the global cycling of carbon. DOC within aquatic systems is known to underpin the microbial food web and therefore plays an essential role in supporting and maintaining the aquatic ecosystem. Despite this the interactions between bacteria and dissolved organic matter (DOM) are not well understood, although the literature indicates that the microbial processing of bioavailable DOM is essential during the production of autochthonous, labile, DOM. DOM can be broadly characterised by its fluorescing properties and Coble et al. (2014) define terrestrially derived DOM as exhibiting "peak C" fluorescence, whilst labile microbially derived DOM is defined as showing "peak T" fluorescence. Our work explores the microbial/DOM interactions by analysing aquatic samples using fluorescence excitation and emission matrices (EEMs) in conjunction with microbial consumption of dissolved oxygen. Environmental and synthetic water samples were subjected to fluorescence characterisation using both fluorescence spectroscopy and in situ fluorescence sensors (Chelsea Technologies Group Ltd.). PARAFAC analysis and peak picking were performed on EEMs and compared with flow cytometry data, used to quantify bacterial numbers present within samples. Synthetic samples were created using glucose, glutamic acid, nutrient-rich water and a standard bacterial seed. Synthetic samples were provided with terrestrially derived DOM via the addition of an aliquot of environmental water. Using a closed system approach, samples were incubated over time (up to a maximum of 20 days) and analysed at pre-defined intervals. The main focus of our work is to improve our understanding of microbial/DOM interactions and how these interactions affect both the DOM characteristics and microbial food web in freshwater aquatic systems. The information gained, in relation to the origin, microbial

  9. Calibration of a passive sampling device for time-integrated sampling of hydrophilic herbicides in aquatic environments.

    Science.gov (United States)

    Tran, Anh T K; Hyne, Ross V; Doble, P

    2007-03-01

    Two types of solid-phase materials, a styrenedivinylbenzene copolymer sorbent (embedded in a SDB-XC Empore disk) and a styrenedivinylbenzene copolymer sorbent modified with sulfonic acid functional groups (embedded in a SDB-RPS Empore disk), were compared as a receiving phase in a passive sampling device for monitoring polar pesticides. The SDB-XC Empore disk was selected for further evaluation, overlayed with either a polysulfone or a polyethersulfone diffusion membrane. The target herbicides included five nonionized herbicides (simazine, atrazine, diuron, clomazone, and metolachlor) and four phenoxy acid herbicides (dicamba, (2,4-dichlorophenoxy)acetic acid [2,4-D], (4-chloro-2-methylphenoxy)acetic acid [MCPA], and triclopyr) with log octanol/water partition coefficient (log K(OW)) values of less than three in water. Uptake of these herbicides generally was higher into a device constructed of a SDB-XC Empore disk as a receiving phase covered with a polyethersulfone membrane compared to a similar device covered with a polysulfone membrane. Using the device with a SDB-XC Empore disk covered with a polyethersulfone membrane, linear uptake of simazine, atrazine, diuron, clomazone, and metolachlor was observed for up to 21 d, and daily sampling rates of the herbicides from water in a laboratory flow-through system were determined. The uptake rate of each nonionized herbicide by the Empore disk-based passive sampler was linearly proportional to its concentration in the water, and the sampling rate was independent of the water concentrations over the 21-d period. Uptake of the phenoxy acid herbicides (2,4-D, MCPA, and triclopyr) obeyed first-order kinetics and rapidly reached equilibrium in the passive sampler after approximately 12 d of exposure. The Empore disk-based passive sampler displayed isotropic kinetics, with a release half-life for triclopyr of approximately 6 d. PMID:17373506

  10. Passive sampling in regulatory chemical monitoring of nonpolar organic compounds in the aquatic environment

    NARCIS (Netherlands)

    Booij, K.; Robinson, C.D.; Burgess, R.M.; Mayer, P.; Roberts, C.A.; Ahrens, L.; Allan, I.J.; Brant, J.; Jones, L.; Kraus, U.R.; Larsen, M.M.; Lepom, P.; Petersen, J.; Pröfrock, D.; Roose, P.; Schäfer, S.; Smedes, F.; Tixier, C.; Vorkamp, K.; Whitehouse, P.

    2016-01-01

    We reviewed compliance monitoring requirements in the EuropeanUnion, the United States, and the Oslo-Paris Convention for the protection of themarine environment of the North-East Atlantic, and evaluated if these are met bypassive sampling methods for nonpolar compounds. The strengths andshortcoming

  11. Passive Sampling in Regulatory Chemical Monitoring of Nonpolar Organic Compounds in the Aquatic Environment

    Science.gov (United States)

    We reviewed compliance monitoring requirements in the European Union (EU), the United States(USA), and the Oslo-Paris Convention for the protection of the marine environment of the North-East Atlantic (OSPAR), and evaluated if these are met by passive sampling methods for nonpola...

  12. Comparative microbial sampling from eutrophic caves in Slovenia and Slovakia using RIDA®COUNT test kits

    OpenAIRE

    Mulec Janez; Krištůfek Václav; Chroňáková Alica

    2012-01-01

    RIDA®COUNT test plates were used as an easy-to-handle and rapid indicator of microbial counts in karst ecosystems of several caves in Slovakia and Slovenia. All of the caves had a high organic input from water streams, tourists, roosting bat colonies or terrestrial surroundings. We sampled swabs, water and air samples to test robustness and universality of the RIDA®COUNT test kit (R-Biopharm AG, Germany, http://www.r-biopharm.com/) for quantification of total bacteria, coliforms, yeast and mo...

  13. Microbial quality of frozen Nile crocodile (Crocodylus niloticus) meat samples from three selected farms in Zimbabwe.

    Science.gov (United States)

    Makanyanga, Tsitsi B; Mutema, Gideon; Mukarati, Norman L; Chikerema, Sylvester M; Makaya, Pious V; Musari, Shuvai; Matope, Gift

    2014-01-17

    Microbial quality of frozen Nile crocodile (Crocodylus niloticus) meat from three farms in Zimbabwe was assessed based on 2051 samples collected for pre-export testing during 2006 to 2011. Data were perused by season and year in terms of aerobic plate (APC), coliform (CC), Escherichia coli (ECC) and Listeria monocytogenes (LMC) counts and the presence of Salmonella spp. The log10-transformed data were compared among the farms and seasons using the Kruskal-Wallis test. Microbial quality of the samples was graded based on the EC No. 2073.2005 criteria for beef. The mean APC and CC for the crocodile meat differed significantly (P=0.000) among the farms with the highest APC (3.2±0.05 log10 cfu/g) and the lowest (2.7±0.05 log10 cfu/g) recorded from farms A and C, respectively. There were no significant differences (P>0.05) in ECC and LMC among the farms, while Salmonella spp. were only isolated from one farm. Although the microbial quality of frozen crocodile meat from these farms was generally within acceptable limits, the isolation of E. coli and Salmonella spp. is of public health concern. Thus, implementing of measures to control the pasteurizing process and to minimize bacterial contamination of crocodile meat after pasteurization need to be carefully considered. PMID:24291179

  14. Comparative microbial sampling from eutrophic caves in Slovenia and Slovakia using RIDA®COUNT test kits

    Directory of Open Access Journals (Sweden)

    Mulec Janez

    2012-01-01

    Full Text Available RIDA®COUNT test plates were used as an easy-to-handle and rapid indicator of microbial counts in karst ecosystems of several caves in Slovakia and Slovenia. All of the caves had a high organic input from water streams, tourists, roosting bat colonies or terrestrial surroundings. We sampled swabs, water and air samples to test robustness and universality of the RIDA®COUNT test kit (R-Biopharm AG, Germany, http://www.r-biopharm.com/ for quantification of total bacteria, coliforms, yeast and mold. Using data from swabs (colony-forming units CFU per cm2 we proposed a scale for description of biocontamination level or superficial microbial load of cave niches. Based on this scale, surfaces of Ardovská Cave, Drienovská Cave and Stará Brzotínská Cave (Slovakia were moderately colonized by microbes, with total microbial counts (sum of total bacterial count and total yeast and molds count in the range of 1,001-10,000 CFU/100 cm2, while some surfaces from the show cave Postojna Cave (Slovenia can be considered highly colonized by microbes (total microbial counts ≥ 10,001 CFU/100 cm2. Ardovská Cave also had a high concentration of airborne microbes, which can be explained by restricted air circulation and regular bat activity. The ratio of coliform to total counts of bacteria in the 9 km of underground Pivka River flow in Postojna Cave dropped approximately 4-fold from the entrance, indicating the high anthropogenic pollution in the most exposed site in the show cave. The RIDA®COUNT test kit was proven to be applicable for regular monitoring of eutrophication and human influence in eutrophic karst caves.

  15. Investigating the significance of dissolved organic contaminants in aquatic environments: coupling passive sampling with in vitro bioassays.

    Science.gov (United States)

    Emelogu, Emmanuel S; Pollard, Pat; Robinson, Craig D; Smedes, Foppe; Webster, Lynda; Oliver, Ian W; McKenzie, Craig; Seiler, T B; Hollert, Henner; Moffat, Colin F

    2013-01-01

    We investigated the feasibility of coupling passive sampling and in vitro bioassay techniques for both chemical and ecotoxicological assessment of complex mixtures of organic contaminants in water. Silicone rubber passive sampling devices (SR-PSDs) were deployed for 8-9 weeks in four streams and an estuary of an agricultural catchment in North East (NE) Scotland. Extracts from the SR-PSDs were analysed for freely dissolved hydrophobic organic contaminants (HOCs) and screened for wide range of pesticides. The total concentrations of dissolved PAHs (∑PAH(40), parent and branched) in the water column of the catchment varied from 38 to 69 ng L(-1), whilst PCBs (∑PCB(32)) ranged 0.02-0.06 ng L(-1). A number and level of pesticides and acid/urea herbicides of varying hydrophobicity (logK(OW)s ~2.25 to ~5.31) were also detected in the SR extracts, indicating their occurrence in the catchment. The acute toxicity and EROD induction potentials of SR extracts from the study sites were evaluated with rainbow trout liver (Oncorhynchus mykiss; RTL-W1) cell line. Acute cytotoxicity was not observed in cells following 48 h exposure to the SR extracts using neutral red uptake assay as endpoint. But, on a sublethal level, for every site, statistically significant EROD activity was observed to some degree following 72 h exposure to extracts, indicating the presence of compounds with dioxin-like effect that are bioavailable to aquatic organisms in the water bodies of the catchment. Importantly, only a small fraction of the EROD induction could be attributed to the PAHs and PCBs that were determined. This preliminary study demonstrates that the coupling of silicone rubber passive sampling techniques with in vitro bioassays is feasible and offers a cost effective early warning signal on water quality deterioration. PMID:22850278

  16. Microbial profile of a kefir sample preparations: grains in natura and lyophilized and fermented suspension

    Directory of Open Access Journals (Sweden)

    Rafaela Strada de Oliveira Bergmann

    2010-12-01

    Full Text Available Probiotics are supplementary foods developed by microbial strains that improve animal health beyond basic nutrition. Probiotics are consumed orally, regardless of being considered as normal inhabitants of the intestines, able to survive in enzimatic and biliary secretions. Kefir is a probiotic originated from the old continent, fermented by several bacteria and yeasts, encapsulated in a polyssacharide matrix, and resembles jelly grains. Kefir is also presented as its sourish product both in sugary or milky suspensions containing vitamins, aminoacids, peptides, carbohydrates, ethanol, and volatile compounds. Kefir is known to have a diverse microbial content depending on the country and fermentative substrates, which cause distinct probiotic effects. In this sense, the purpose of this work was to isolate, identify, and quantify the microbial content of a native sugary kefir sample (fermented suspension and lyophilized natural grains. Serial dilutions were plated on Rogosa agar (AR and De Man, Rogosa and Sharpe (MRS, for Lactobacillus; Brain Heart Infusion (BHI, for total bacteria; Sabouraud-Dextrose-Agar (SDA, for yeasts and filamentous fungi; Thioglycolate Agar (TA, for Streptococcus, Acetobacteria and Leuconostoc; and Coconut Water Agar (CWA, and CWA supplemented with yeast extract (CWAY, for various genera. Genera and species for all strains were identified through biochemical reactions and specific API systems. The microbial profile of kefir was different from other sources of grains despite the presence of similar microorganisms and others which have not been reported yet. The data obtained with the CWA and CWAE media suggest that both substrates are alternative and salutary media for culture of kefir strains.

  17. Rapid microbial sample preparation from blood using a novel concentration device.

    Science.gov (United States)

    Boardman, Anna K; Campbell, Jennifer; Wirz, Holger; Sharon, Andre; Sauer-Budge, Alexis F

    2015-01-01

    Appropriate care for bacteremic patients is dictated by the amount of time needed for an accurate diagnosis. However, the concentration of microbes in the blood is extremely low in these patients (1-100 CFU/mL), traditionally requiring growth (blood culture) or amplification (e.g., PCR) for detection. Current culture-based methods can take a minimum of two days, while faster methods like PCR require a sample free of inhibitors (i.e., blood components). Though commercial kits exist for the removal of blood from these samples, they typically capture only DNA, thereby necessitating the use of blood culture for antimicrobial testing. Here, we report a novel, scaled-up sample preparation protocol carried out in a new microbial concentration device. The process can efficiently lyse 10 mL of bacteremic blood while maintaining the microorganisms' viability, giving a 30-μL final output volume. A suite of six microorganisms (Staphylococcus aureus, Streptococcus pneumoniae, Escherichia coli, Haemophilus influenzae, Pseudomonas aeruginosa, and Candida albicans) at a range of clinically relevant concentrations was tested. All of the microorganisms had recoveries greater than 55% at the highest tested concentration of 100 CFU/mL, with three of them having over 70% recovery. At the lowest tested concentration of 3 CFU/mL, two microorganisms had recoveries of ca. 40-50% while the other four gave recoveries greater than 70%. Using a Taqman assay for methicillin-sensitive S. aureus (MSSA)to prove the feasibility of downstream analysis, we show that our microbial pellets are clean enough for PCR amplification. PCR testing of 56 spiked-positive and negative samples gave a specificity of 0.97 and a sensitivity of 0.96, showing that our sample preparation protocol holds great promise for the rapid diagnosis of bacteremia directly from a primary sample. PMID:25675242

  18. Diffusive sampling and measurement of microbial volatile organic compounds in indoor air.

    Science.gov (United States)

    Araki, A; Eitaki, Y; Kawai, T; Kanazawa, A; Takeda, M; Kishi, R

    2009-10-01

    Microbial volatile organic compounds (MVOC), chemicals emitted from various microorganisms, in indoor air have been of concern in recent years. For large field studies, diffusive samplers are widely used to measure indoor environments. Since the sampling rate of a sampler is a fundamental parameter to calculate concentration, the sampling rates of eight MVOC with diffusive samplers were determined experimentally using a newly developed water-bubbling method: air was supplied to the MVOC-solutions and the vapor collected in an exposure bag, where diffusive and active samplers were placed in parallel for comparison. Correlations between the diffusive and active samplings gave good linear regressions. The sampling rates were 30-35 ml/min and the detection limits were 0.044-0.178 microg/m(3), as determined by GC/MS analysis. Application of the sampling rates in indoor air was validated by parallel sampling of the diffusive and active sampling method. 5% Propan-2-ol/CS(2) was the best solvent to desorb the compounds from absorbents. The procedure was applied to a field study in 41 dwellings. The most frequently detected compounds were hexan-2-one and heptan-2-one, with 97.5% detection rates and geometric mean values of 0.470 and 0.302 microg/m(3), respectively. This study shows that diffusive samplers are applicable to measure indoor MVOC levels. Practical Implications At present, there are still limited reports on indoor Microbial Volatile Organic Compounds (MVOC) levels in general dwellings and occupants' health. Compared with active sampling methods, air sampling using a diffusive sampler is particularly advantageous for use in large field studies due to its smallness, light-size, easy-handling, and cost-effectiveness. In this study, sampling rates of selected MVOC of the diffusive sampler were determined using the water-bubbling method: generating gases by water-bubbling and exposing the diffusive and active samplers at the same time. The obtained sampling rates

  19. Supercritical Fluid Extraction and Ultra Performance Liquid Chromatography of Respiratory Quinones for Microbial Community Analysis in Environmental and Biological Samples

    OpenAIRE

    Koichi Fujie; Hiroyuki Daimon; Yoichi Atsuta; Muhammad Hanif

    2012-01-01

    Microbial community structure plays a significant role in environmental assessment and animal health management. The development of a superior analytical strategy for the characterization of microbial community structure is an ongoing challenge. In this study, we developed an effective supercritical fluid extraction (SFE) and ultra performance liquid chromatography (UPLC) method for the analysis of bacterial respiratory quinones (RQ) in environmental and biological samples. RQ profile analysi...

  20. Up-dating the Cholodny method using PET films to sample microbial communities in soil

    Directory of Open Access Journals (Sweden)

    Kordium V. A.

    2011-04-01

    Full Text Available The aim of this work was to investigate the use of PET (polyethylene terephtalate films as a modern development of Cholodny’s glass slides, to enable microscopy and molecular-based analysis of soil communities where spatial detail at the scale of microbial habitats is essential to understand microbial associations and interactions in this complex environment. Methods. Classical microbiological methods; attachment assay; surface tension measurements; molecular techniques: DNA extraction, PCR; confocal laser scanning microscopy (CLSM; micro-focus X-ray computed tomography (µCT. Results. We first show, using the model soil and rhizosphere bacteria Pseudomonas fluorescens SBW25 and P. putida KT2440, that bacteria are able to attach and detach from PET films, and that pre-conditioning with a filtered soil suspension improved the levels of attachment. Bacteria attached to the films were viable and could develop substantial biofilms. PET films buried in soil were rapidly colonised by microorganisms which could be investigated by CLSM and recovered onto agar plates. Secondly, we demonstrate that µCT can be used to non-destructively visualise soil aggregate contact points and pore spaces across the surface of PET films buried in soil. Conclusions. PET films are a successful development of Cholodny’s glass slides and can be used to sample soil communities in which bacterial adherence, growth, biofilm and community development can be investigated. The use of these films with µCT imaging in soil will enable a better understanding of soil micro-habitats and the spatially-explicit nature of microbial interactions in this complex environment.

  1. A heteroskedastic error covariance matrix estimator using a first-order conditional autoregressive Markov simulation for deriving asympotical efficient estimates from ecological sampled Anopheles arabiensis aquatic habitat covariates

    Directory of Open Access Journals (Sweden)

    Githure John I

    2009-09-01

    Full Text Available Abstract Background Autoregressive regression coefficients for Anopheles arabiensis aquatic habitat models are usually assessed using global error techniques and are reported as error covariance matrices. A global statistic, however, will summarize error estimates from multiple habitat locations. This makes it difficult to identify where there are clusters of An. arabiensis aquatic habitats of acceptable prediction. It is therefore useful to conduct some form of spatial error analysis to detect clusters of An. arabiensis aquatic habitats based on uncertainty residuals from individual sampled habitats. In this research, a method of error estimation for spatial simulation models was demonstrated using autocorrelation indices and eigenfunction spatial filters to distinguish among the effects of parameter uncertainty on a stochastic simulation of ecological sampled Anopheles aquatic habitat covariates. A test for diagnostic checking error residuals in an An. arabiensis aquatic habitat model may enable intervention efforts targeting productive habitats clusters, based on larval/pupal productivity, by using the asymptotic distribution of parameter estimates from a residual autocovariance matrix. The models considered in this research extends a normal regression analysis previously considered in the literature. Methods Field and remote-sampled data were collected during July 2006 to December 2007 in Karima rice-village complex in Mwea, Kenya. SAS 9.1.4® was used to explore univariate statistics, correlations, distributions, and to generate global autocorrelation statistics from the ecological sampled datasets. A local autocorrelation index was also generated using spatial covariance parameters (i.e., Moran's Indices in a SAS/GIS® database. The Moran's statistic was decomposed into orthogonal and uncorrelated synthetic map pattern components using a Poisson model with a gamma-distributed mean (i.e. negative binomial regression. The eigenfunction

  2. A review of methods used in the preparation and analysis of Orimulsion-related samples (part 2 : aquatic toxicology)

    International Nuclear Information System (INIS)

    This paper presented a review of aquatic toxicity studies developed by several research groups around the world working on Orimulsion since its commercial debut in 1993. Orimulsion is an emulsion of natural bitumen, freshwater and a surfactant which maintains its stability. The review includes studies of Orimulsion-100 and Orimulsion-400 formulations. The chemical composition of the two formulations is similar, with the primary component being Cerro Negro bitumen from the Orinoco Belt in eastern Venezuela. The methods used in the aquatic toxicity studies were reviewed. They included water-soluble fractions, oil-in-water dispersions, and water-accommodated fractions. The aquatic toxicity studies provided comparative toxicity data for marine and freshwater species, plants and animals, as well as static and dynamic exposures. A brief description of studies of bacteria, algae and aquatic invertebrates was presented. Comparative toxicity data of the two formulations suggests that both have similar acute toxicity, with Orimulsion-400 being slightly lower. It was recommended that an oil-in-water dispersion (OWD) should be used for all water column exposures. 25 refs., 4 tabs., 1 fig

  3. Molecular analysis of microbial community in a groundwater sample polluted by landfill leachate and seawater

    Institute of Scientific and Technical Information of China (English)

    TIAN Yang-jie; YANG Hong; WU Xiu-juan; LI Dao-tang

    2005-01-01

    Seashore landfill aquifers are environments of special physicochemical conditions (high organic load and high salinity), and microbes in leachate-polluted aquifers play a significant role for intrinsic bioremediation. In order to characterize microbial diversity and look for clues on the relationship between microbial community structure and hydrochemistry, a culture-independent examination of a typical groundwater sample obtained from a seashore landfill was conducted by sequence analysis of 16S rDNA clone library. Two sets of universal 16S rDNA primers were used to amplify DNA extracted from the groundwater so that problems arising from primer efficiency and specificity could be reduced. Of 74 clones randomly selected from the libraries, 30 contained unique sequences whose analysis showed that the majority of them belonged to bacteria (95.9%), with Proteobacteria (63.5%) being the dominant division. One archaeal sequence and one eukaryotic sequence were found as well. Bacterial sequences belonging to the following phylogenic groups were identified: Bacteroidetes (20.3%), β, γ, δ and ε-subdivisions of Proteobacteria (47.3%, 9.5%, 5.4% and 1.3%, respectively), Firmicutes (1.4%), Actinobacteria (2.7%), Cyanobacteria (2.7%). The percentages of Proteobacteria and Bacteroides in seawater were greater than those in the groundwater from a non-seashore landfill, indicating a possible influence of seawater. Quite a few sequences had close relatives in marine or hypersaline environments. Many sequences showed affiliations with microbes involved in anaerobic fermentation. The remarkable abundance of sequences related to (per)chlorate-reducing bacteria (C1RB) in the groundwater was significant and worthy of further study.

  4. Use of image analysis for estimation of microbial biomass and activity in samples of natural aquatic ecosystems

    International Nuclear Information System (INIS)

    Both quality and affordability of digital cameras, as well as of software for image analysis, have increased significantly during the past several years, facilitating their routine use in limnology. In our laboratory, we use image analysis for many tasks including determination of bacterioplankton biomass, determination of the biomass of filamentous microorganisms, and measurement of the activity of cell-associated extracellular enzymes of algae and bacteria. (authors)

  5. Supercritical fluid extraction and ultra performance liquid chromatography of respiratory quinones for microbial community analysis in environmental and biological samples.

    Science.gov (United States)

    Hanif, Muhammad; Atsuta, Yoichi; Fujie, Koichi; Daimon, Hiroyuki

    2012-01-01

    Microbial community structure plays a significant role in environmental assessment and animal health management. The development of a superior analytical strategy for the characterization of microbial community structure is an ongoing challenge. In this study, we developed an effective supercritical fluid extraction (SFE) and ultra performance liquid chromatography (UPLC) method for the analysis of bacterial respiratory quinones (RQ) in environmental and biological samples. RQ profile analysis is one of the most widely used culture-independent tools for characterizing microbial community structure. A UPLC equipped with a photo diode array (PDA) detector was successfully applied to the simultaneous determination of ubiquinones (UQ) and menaquinones (MK) without tedious pretreatment. Supercritical carbon dioxide (scCO(2)) extraction with the solid-phase cartridge trap proved to be a more effective and rapid method for extracting respiratory quinones, compared to a conventional organic solvent extraction method. This methodology leads to a successful analytical procedure that involves a significant reduction in the complexity and sample preparation time. Application of the optimized methodology to characterize microbial communities based on the RQ profile was demonstrated for a variety of environmental samples (activated sludge, digested sludge, and compost) and biological samples (swine and Japanese quail feces). PMID:22391598

  6. Supercritical Fluid Extraction and Ultra Performance Liquid Chromatography of Respiratory Quinones for Microbial Community Analysis in Environmental and Biological Samples

    Directory of Open Access Journals (Sweden)

    Koichi Fujie

    2012-03-01

    Full Text Available Microbial community structure plays a significant role in environmental assessment and animal health management. The development of a superior analytical strategy for the characterization of microbial community structure is an ongoing challenge. In this study, we developed an effective supercritical fluid extraction (SFE and ultra performance liquid chromatography (UPLC method for the analysis of bacterial respiratory quinones (RQ in environmental and biological samples. RQ profile analysis is one of the most widely used culture-independent tools for characterizing microbial community structure. A UPLC equipped with a photo diode array (PDA detector was successfully applied to the simultaneous determination of ubiquinones (UQ and menaquinones (MK without tedious pretreatment. Supercritical carbon dioxide (scCO2 extraction with the solid-phase cartridge trap proved to be a more effective and rapid method for extracting respiratory quinones, compared to a conventional organic solvent extraction method. This methodology leads to a successful analytical procedure that involves a significant reduction in the complexity and sample preparation time. Application of the optimized methodology to characterize microbial communities based on the RQ profile was demonstrated for a variety of environmental samples (activated sludge, digested sludge, and compost and biological samples (swine and Japanese quail feces.

  7. Understanding carbon regulation in aquatic systems - Bacteriophages as a model.

    Science.gov (United States)

    Sanmukh, Swapnil; Khairnar, Krishna; Paunikar, Waman; Lokhande, Satish

    2015-01-01

    The bacteria and their phages are the most abundant constituents of the aquatic environment, and so represent an ideal model for studying carbon regulation in an aquatic system. The microbe-mediated interconversion of bioavailable organic carbon (OC) into dissolved organic carbon (DOC) by the microbial carbon pump (MCP) has been suggested to have the potential to revolutionize our view of carbon sequestration. It is estimated that DOC is the largest pool of organic matter in the ocean and, though a major component of the global carbon cycle, its source is not yet well understood. A key element of the carbon cycle is the microbial conversion of DOC into inedible forms. The primary aim of this study is to understand the phage conversion from organic to inorganic carbon during phage-host interactions. Time studies of phage-host interactions under controlled conditions reveal their impact on the total carbon content of the samples and their interconversion of organic and inorganic carbon compared to control samples. A total organic carbon (TOC) analysis showed an increase in inorganic carbon content by 15-25 percent in samples with bacteria and phage compared to samples with bacteria alone. Compared to control samples, the increase in inorganic carbon content was 60-70-fold in samples with bacteria and phage, and 50-55-fold for samples with bacteria alone. This study indicates the potential impact of phages in regulating the carbon cycle of aquatic systems. PMID:26213615

  8. Aquatic plants

    DEFF Research Database (Denmark)

    Madsen, T. V.; Sand-Jensen, K.

    2006-01-01

    Aquatic fl owering plants form a relatively young plant group on an evolutionary timescale. The group has developed over the past 80 million years from terrestrial fl owering plants that re-colonised the aquatic environment after 60-100 million years on land. The exchange of species between...... terrestrial and aquatic environments continues today and is very intensive along stream banks. In this chapter we describe the physical and chemical barriers to the exchange of plants between land and water....

  9. Up-dating the Cholodny method using PET films to sample microbial communities in soil

    OpenAIRE

    Kordium V. A.; Dello Sterpaio P.; Koza A.; Moshynets O. V.; Spiers A. J.

    2011-01-01

    The aim of this work was to investigate the use of PET (polyethylene terephtalate) films as a modern development of Cholodny’s glass slides, to enable microscopy and molecular-based analysis of soil communities where spatial detail at the scale of microbial habitats is essential to understand microbial associations and interactions in this complex environment. Methods. Classical microbiological methods; attachment assay; surface tension measurements; molecular techniques: DNA extraction, PCR;...

  10. Microbial Indicator Profiling of Fresh Produce and Environmental Samples from Farms and Packing Facilities in Northern Mexico.

    Science.gov (United States)

    Heredia, Norma; Caballero, Cindy; Cárdenas, Carmen; Molina, Karina; García, Rafael; Solís, Luisa; Burrowes, Vanessa; Bartz, Faith E; de Aceituno, Anna Fabiszewski; Jaykus, Lee-Ann; García, Santos; Leon, Juan

    2016-07-01

    To compare microbiological indicator and pathogen contamination among different types of fresh produce and environmental samples along the production chain, 636 samples of produce (rinsates from cantaloupe melons, jalapeño peppers, and tomatoes) and environmental samples (rinsates from hands of workers, soil, and water) were collected at four successive steps in the production process (from the field before harvest through the packing facility) on 11 farms in northern Mexico during 2011 and 2012. Samples were assayed for enteric pathogens (Escherichia coli O157:H7, other Shiga toxigenic E. coli, Salmonella, and Listeria monocytogenes) and microbial indicators (coliforms, other E. coli strains, and Enterococcus spp.). Salmonella was the only pathogen detected; it was found in one preharvest jalapeño sample (detection limits: 0.0033 CFU/ml in produce and hand samples, 0.0013 CFU/ml in water, and 0.04 CFU/g in soil). Microbial indicator profiles for produce, worker hands, and soil from jalapeño and tomato farms were similar, but cantaloupe farm samples had higher indicator levels (P < 0.05 for all comparisons) on fruit (6.5, 2.8, and 7.2 log CFU per fruit) and hands (6.6, 3.1, and 7.1 log CFU per hand) for coliforms, E. coli, and Enterococcus, respectively, and lower E. coli levels in soil (<1 CFU/g). In water from tomato farms, E. coli indicators were significantly more prevalent (70 to 89% of samples were positive; P = 0.01 to 0.02), and geometric mean levels were higher (0.3 to 0.6 log CFU/100 ml) than those in cantaloupe farm water (32 to 38% of samples were positive, geometric mean <1 CFU/100 ml). Microbial indicators were present during all production steps, but prevalence and levels were generally highest at the final on-farm production step (the packing facility) (P < 0.03 for significant comparisons). The finding that microbial contamination on produce farms is influenced by produce type and production step can inform the design of effective approaches to

  11. Microbial diversity in firework chemical exposed soil and water samples collected in Virudhunagar district, Tamil Nadu, India

    OpenAIRE

    Dhasarathan, P.; Theriappan, P.; Ashokraja, C.

    2009-01-01

    Microbial diversity of soil and water samples collected from pyrochemicals exposed areas of Virdhunagar district (Tamil Nadu, India) was studied. Soil and water samples from cultivable area, waste land and city area of the same region were also studied for a comparative acount. There is a remarkable reduction in total heterotrophic bacterial population (THB) in pyrochemicals exposed soil and water samples (42 × 104 CFU/g and 5.6 × 104 CFU/ml respectively), compared to the THB of cultivable ar...

  12. Comparative analysis of chemical and microbial profiles in estuarine sediments sampled from Kanto and Tohoku regions in Japan.

    Science.gov (United States)

    Asakura, Taiga; Date, Yasuhiro; Kikuchi, Jun

    2014-06-01

    Estuarine environments accumulate large quantities of organic matter from land masses adjoining the sea, and this is consumed as part of the detritus cycle. These environments are rich in biodiversity, and their ecosystem services greatly benefit humans. However, the estuarine environments have complicated aqueous ecosystems, thus the comprehensive evaluation of biotic interactions and stability is difficult using conventional hypothesis-driven approaches. In this study, we describe the advancement of an evaluation strategy for characterizing and visualizing the interactions and relationships among the microorganisms and chemicals in sediment ecosystems of estuarine environments by a combination of organic matter and elemental profiling as well as microbial profiling. We also report our findings from a comparative analysis of estuarine and coastal environmental samples collected from the Kanto and Tsunami-affected Tohoku regions in Japan. The microbial-gated correlation deployed from the coefficient of microbiota from the correlation matrix and network analysis was able to visualize and summarize the different relationships among the microbial communities, sediment organic matter, and element profiles based on geographical differences in Kanto and Tohoku regions. We demonstrated remarkable estuarine eutrophication in the Kanto region based on abundant sediment polypeptide signals and water nitrogen ions catabolized by microbiota. Therefore, we propose that this data-driven approach is a powerful method for analyzing, visualizing, and evaluating complex metabolic dynamics and networks in sediment microbial ecosystems and can be applied to other environmental ecosystems, such as deep sea sediments and agronomic and forest soils. PMID:24889864

  13. Occurrence and quantitative microbial risk assessment of Cryptosporidium and Giardia in soil and air samples

    Directory of Open Access Journals (Sweden)

    Ana Paola Balderrama-Carmona

    2014-09-01

    Conclusions: Soil and air inhalation and/or ingestion are important vehicles for these parasites. To our knowledge, the results obtained in the present study represent the first QMRAs for cryptosporidiosis and giardiasis due to soil and air inhalation/ingestion in Mexico. In addition, this is the first evidence of the microbial air quality around these parasites in rural zones.

  14. Isolation and study of microorganisms from oil samples for application in Microbial Enhanced Oil Recovery

    OpenAIRE

    Gudiña, Eduardo J.; Pereira, Jorge F. B.; L. R. Rodrigues; Coutinho, João A. P.; J.A. Teixeira

    2012-01-01

    Microbial Enhanced Oil Recovery (MEOR) is potentially useful to increment oil recovery from a reservoir beyond primary and secondary recovery operations using microorganisms and their metabolites. Stimulation of bacterial growth for biosurfactant production and degradation of heavy oil fractions by indigenous microorganisms can enhance the fluidity and reduce the capillary forces that retain the oil into the reservoir. MEOR offers major advantages over conventional EOR, namely low...

  15. Microbial profile of a kefir sample preparations: grains in natura and lyophilized and fermented suspension

    OpenAIRE

    Rafaela Strada de Oliveira Bergmann; Maria Aparecida Pereira; Sandra Maria Oliveira Moraes Veiga; José Maurício Schneedorf; Nelma de Mello Silva Oliveira; João Evangelista Fiorini

    2010-01-01

    Probiotics are supplementary foods developed by microbial strains that improve animal health beyond basic nutrition. Probiotics are consumed orally, regardless of being considered as normal inhabitants of the intestines, able to survive in enzimatic and biliary secretions. Kefir is a probiotic originated from the old continent, fermented by several bacteria and yeasts, encapsulated in a polyssacharide matrix, and resembles jelly grains. Kefir is also presented as its sourish product both in s...

  16. Application of Multi-Species Microbial Bioassay to Assess the Effects of Engineered Nanoparticles in the Aquatic Environment: Potential of a Luminous Microbial Array for Toxicity Risk Assessment (LumiMARA on Testing for Surface-Coated Silver Nanoparticles

    Directory of Open Access Journals (Sweden)

    YounJung Jung

    2015-07-01

    Full Text Available Four different manufactured surface-coated silver nanoparticles (AgNPs with coating of citrate, tannic acid, polyethylene glycol, and branched polyethylenimine were used in this study. The toxicity of surface-coated AgNPs was evaluated by a luminous microbial array for toxicity risk assessment (LumiMARA using multi-species of luminescent bacteria. The salt stability of four different AgNPs was measured by UV absorbance at 400 nm wavelength, and different surface-charged AgNPs in combination with bacteria were observed using scanning electron microscopy (SEM. Both branched polyethylenimine (BPEI-AgNPs and polyethylene glycol (PEG-AgNPs were shown to be stable with 2% NaCl (non-aggregation, whereas both citrate (Cit-AgNPs and tannic acid (Tan-AgNPs rapidly aggregated in 2% NaCl solution. The values of the 50% effective concentration (EC50 for BPEI-AgNPs in marine bacteria strains (1.57 to 5.19 mg/L were lower than those for the other surface-coated AgNPs (i.e., Cit-AgNPs, Tan-AgNPs, and PEG-AgNPs. It appears that the toxicity of AgNPs could be activated by the interaction of positively charged AgNPs with the negatively charged bacterial cell wall from the results of LumiMARA. LumiMARA for toxicity screening has advantageous compared to a single-species bioassay and is applicable for environmental samples as displaying ranges of assessment results.

  17. Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing.

    Science.gov (United States)

    Jeong, Ju-Yong; Park, Hee-Deung; Lee, Kyong-Hee; Weon, Hang-Yeon; Ka, Jong-Ok

    2011-08-01

    It is important to know the comprehensive microbial communities of fecal pollution sources and receiving water bodies for microbial source tracking. Pyrosequencing targeting the V1-V3 hypervariable regions of the 16S rRNA gene was used to investigate the characteristics of bacterial and Bacteroidales communities in major fecal sources and river waters. Diversity analysis indicated that cow feces had the highest diversities in the bacterial and Bacteroidales group followed by the pig sample, with human feces having the lowest value. The Bacteroidales, one of the potential fecal indicators, totally dominated in the fecal samples accounting for 31%-52% of bacterial sequences, but much less (0.6%) in the river water. Clustering and Venn diagram analyses showed that the human sample had a greater similarity to the pig sample in the bacterial and Bacteroidales communities than to samples from other hosts. Traditional fecal indicators, i.e., Escherichia coli, were detected in the human and river water samples at very low rates and Clostridium perfringens and enterococci were not detected in any samples. Besides the Bacteroidales group, some microorganisms detected in the specific hosts, i.e., Parasutterella excrementihominis, Veillonella sp., Dialister invisus, Megamonas funiformis, and Ruminococcus lactaris for the human and Lactobacillus amylovorus and Atopostipes sp. for the pig, could be used as potential host-specific fecal indicators. These microorganisms could be used as multiple fecal indicators that are not dependent on the absence or presence of a single indicator. Monitoring for multiple indicators that are highly abundant and host-specific would greatly enhance the effectiveness of fecal pollution source tracking. PMID:21887641

  18. The impact of different methods of DNA extraction on microbial community measures of BALF samples based on metagenomic data

    Science.gov (United States)

    Wen, Yan; Xiao, Fei; Wang, Chen; Wang, Zhen

    2016-01-01

    Purpose: It is a challenge to find a better microorganisms DNA extraction method for samples taken from the lower airways for metagenomic sequencing, as the concentrations of bacteria in the alveoli and small airways are likely considerably less than that of the mouth or lower digestive tract. Background DNA from the host, and extraction biases can significantly interfere with microbiota assessment and increase the cost of sequencing. This study aimed to develop an optimized DNA extraction method, which would enable a higher concentration of microbial DNA to be extracted from the samples. Methods: We compared the microbiota profiles of the lower airway communities in twelve individuals with IIP. DNA was extracted using three different extraction methods: QIAamp UCP PurePathogen Blood Kit named kit3 in this study, QIAamp UCP Pathogen Mini Kit named kit2, and QIAamp DNA Microbiome Kit named kit1. DNA libraries were constructed according to the manufacturer’s instructions (Illumina). The same workflows from Illumina were used to perform cluster generation, template hybridization, isothermal amplification, linearization, blocking, denaturing, and hybridization of the sequencing primers. Raw data was uploaded to MG-RAST v3 and analyzed. Results: A great number of bacterium inhabits the lower airways of patients with IIP, though there is no airway infection. More bacterium was found in mouth or upper airway. DNA concentrations of DNA samples isolated with kit1 with Benzonase were significantly lower than those isolated with the other two kits for BALF and mouthwash samples. Moreover, the ratio of human genome in clean reads of samples isolated with kit1 with Benzonase was remarkably smaller than those isolated with kit2 and kit3. The relative abundance of total bacteria, the total number of taxa, and the relative abundance of taxa in BALF samples as opposed to mouthwash samples with kit1 were significantly higher than for those extracted the other kits. Conclusion: A

  19. Evaluation of an hPXR reporter gene assay for the detection of aquatic emerging pollutants: screening of chemicals and application to water samples

    Energy Technology Data Exchange (ETDEWEB)

    Creusot, Nicolas; Kinani, Said; Maillot-Marechal, Emmanuelle; Porcher, Jean-Marc; Ait-Aissa, Selim [Unite Ecotoxicologie, INERIS, Verneuil-en-Halatte (France); Balaguer, Patrick [IRCM-UM1-CRLC Val d' Aurelle, INSERM U896, Montpellier (France); Tapie, Nathalie; LeMenach, Karyn; Budzinski, Helene [ISM/LPTC-UMR 5255 CNRS Universite Bordeaux 1, Talence (France)

    2010-01-15

    Many environmental endocrine-disrupting compounds act as ligands for nuclear receptors. Among these receptors, the human pregnane X receptor (hPXR) is well described as a xenobiotic sensor to various classes of chemicals, including pharmaceuticals, pesticides, and steroids. To assess the potential use of PXR as a sensor for aquatic emerging pollutants, we employed an in vitro reporter gene assay (HG5LN-hPXR cells) to screen a panel of environmental chemicals and to assess PXR-active chemicals in (waste) water samples. Of the 57 compounds tested, 37 were active in the bioassay and 10 were identified as new PXR agonists: triazin pesticides (promethryn, terbuthryn, terbutylazine), pharmaceuticals (fenofibrate, bezafibrate, clonazepam, medazepam) and non co-planar polychlorobiphenyls (PCBs; PCB101, 138, 180). Furthermore, we detected potent PXR activity in two types of water samples: passive polar organic compounds integrative sampler (POCIS) extracts from a river moderately impacted by agricultural and urban inputs and three effluents from sewage treatment works (STW). Fractionation of POCIS samples showed the highest PXR activity in the less polar fraction, while in the effluents, PXR activity was mainly associated with the dissolved water phase. Chemical analyses quantified several PXR-active substances (i.e., alkylphenols, hormones, pharmaceuticals, pesticides, PCBs, bisphenol A) in POCIS fractions and effluent extracts. However, mass-balance calculations showed that the analyzed compounds explained only 0.03% and 1.4% of biological activity measured in POCIS and STW samples, respectively. In effluents, bisphenol A and 4-tert-octylphenol were identified as main contributors of instrumentally derived PXR activities. Finally, the PXR bioassay provided complementary information as compared to estrogenic, androgenic, and dioxin-like activity measured in these samples. This study shows the usefulness of HG5LN-hPXR cells to detect PXR-active compounds in water samples

  20. Use of Homogeneously-Sized Carbon Steel Ball Bearings to Study Microbially-Influenced Corrosion in Oil Field Samples

    OpenAIRE

    Gerrit eVoordouw; Priyesh eMenon; Tijan ePinnock; Mohita eSharma; Yin eShen; Amanda eVenturelli; Johanna eVoordouw; Aoife eSexton

    2016-01-01

    Microbially-influenced corrosion (MIC) contributes to the general corrosion rate (CR), which is typically measured with carbon steel coupons. Here we explore the use of carbon steel ball bearings, referred to as beads (55.0 ± 0.3 mg; Ø = 0.238 cm), for determining CRs. CRs for samples from an oil field in Oceania incubated with beads were determined by the weight loss method, using acid treatment to remove corrosion products. The release of ferrous and ferric iron was also measured and CRs ba...

  1. Metal measurement in aquatic environments by passive sampling methods: Lessons learning from an in situ intercomparison exercise.

    Science.gov (United States)

    Dabrin, A; Ghestem, J-P; Uher, E; Gonzalez, J-L; Allan, I J; Schintu, M; Montero, N; Balaam, J; Peinerud, E; Miège, C; Coquery, M

    2016-01-01

    Passive sampling devices (PS) are widely used for pollutant monitoring in water, but estimation of measurement uncertainties by PS has seldom been undertaken. The aim of this work was to identify key parameters governing PS measurements of metals and their dispersion. We report the results of an in situ intercomparison exercise on diffusive gradient in thin films (DGT) in surface waters. Interlaboratory uncertainties of time-weighted average (TWA) concentrations were satisfactory (from 28% to 112%) given the number of participating laboratories (10) and ultra-trace metal concentrations involved. Data dispersion of TWA concentrations was mainly explained by uncertainties generated during DGT handling and analytical procedure steps. We highlight that DGT handling is critical for metals such as Cd, Cr and Zn, implying that DGT assembly/dismantling should be performed in very clean conditions. Using a unique dataset, we demonstrated that DGT markedly lowered the LOQ in comparison to spot sampling and stressed the need for accurate data calculation. PMID:26589099

  2. Air sampling procedures to evaluate microbial contamination: a comparison between active and passive methods in operating theatres

    Directory of Open Access Journals (Sweden)

    Napoli Christian

    2012-08-01

    Full Text Available Abstract Background Since air can play a central role as a reservoir for microorganisms, in controlled environments such as operating theatres regular microbial monitoring is useful to measure air quality and identify critical situations. The aim of this study is to assess microbial contamination levels in operating theatres using both an active and a passive sampling method and then to assess if there is a correlation between the results of the two different sampling methods. Methods The study was performed in 32 turbulent air flow operating theatres of a University Hospital in Southern Italy. Active sampling was carried out using the Surface Air System and passive sampling with settle plates, in accordance with ISO 14698. The Total Viable Count (TVC was evaluated at rest (in the morning before the beginning of surgical activity and in operational (during surgery. Results The mean TVC at rest was 12.4 CFU/m3 and 722.5 CFU/m2/h for active and passive samplings respectively. The mean in operational TVC was 93.8 CFU/m3 (SD = 52.69; range = 22-256 and 10496.5 CFU/m2/h (SD = 7460.5; range = 1415.5-25479.7 for active and passive samplings respectively. Statistical analysis confirmed that the two methods correlate in a comparable way with the quality of air. Conclusion It is possible to conclude that both methods can be used for general monitoring of air contamination, such as routine surveillance programs. However, the choice must be made between one or the other to obtain specific information.

  3. Retrospective bioindication of stratospheric ozone and ultraviolet radiation using hydroxycinnamic acid derivatives of herbarium samples of an aquatic liverwort

    Energy Technology Data Exchange (ETDEWEB)

    Otero, Saul [Universidad de La Rioja, Complejo Cientifico-Tecnologico, Avda. Madre de Dios 51, 26006 Logrono (La Rioja) (Spain); Nunez-Olivera, Encarnacion, E-mail: encarnacion.nunez@unirioja.e [Universidad de La Rioja, Complejo Cientifico-Tecnologico, Avda. Madre de Dios 51, 26006 Logrono (La Rioja) (Spain); Martinez-Abaigar, Javier; Tomas, Rafael [Universidad de La Rioja, Complejo Cientifico-Tecnologico, Avda. Madre de Dios 51, 26006 Logrono (La Rioja) (Spain); Huttunen, Satu [Department of Biology, University of Oulu, P.O. Box 3000, FIN-90 014 Finland (Finland)

    2009-08-15

    We analyzed bulk UV absorbance of methanolic extracts and levels of five UV-absorbing compounds (hydroxycinnamic acid derivatives) in 135 herbarium samples of the liverwort Jungermannia exsertifolia subsp. cordifolia from northern Europe. Samples had been collected in 1850-2006 (96% in June-August). Both UV absorbance and compound levels were correlated positively with collection year. p-Coumaroylmalic acid (C1) was the only compound showing a significant (and negative) correlation with stratospheric ozone and UV irradiance in the period that real data of these variables existed. Stratospheric ozone reconstruction (1850-2006) based on C1 showed higher values in June than in July and August, which coincides with the normal monthly variation of ozone. Combining all the data, there was no long-term temporal trend from 1850 to 2006. Reconstructed UV showed higher values in June-July than in August, but again no temporal trend was detected in 1918-2006 using the joint data. This agrees with previous UV reconstructions. - On the basis of the levels of p-coumaroylmalic acid in liverwort samples, reconstructions of both ozone and UV radiation showed no significant temporal trend in, respectively, 1850-2006 and 1918-2006.

  4. Counting and differentiating aquatic biotic nanoparticles by full-field interferometry: from laboratory tests to Tara Oceans sample analysis

    CERN Document Server

    Boccara, Martine; Bryan, Catherine Venien; Bailly-Bechet, Marc; Bowler, Chris; Boccara, Albert Claude

    2016-01-01

    There is a huge abundance of viruses and membrane vesicles in seawater. We describe a new full-field, incoherently illuminated, shot-noise limited, common-path interferometric detection method that we couple with the analysis of Brownian motion to detect, quantify, and differentiate biotic nanoparticles. We validated the method with calibrated nanoparticles and homogeneous DNA or RNA.viruses. The smallest virus size that we characterized with a suitable signal-to-noise ratio was around 30 nm in diameter. Analysis of Brownian motions revealed anisotropic trajectories for myoviruses.We further applied the method for vesicles detection and for analysis of coastal and oligotrophic samples from Tara Oceans circumnavigation.

  5. Status Report on the Microbial Characterization of Halite and Groundwater Samples from the WIPP

    International Nuclear Information System (INIS)

    This report summarizes the progress made in the ongoing task of characterizing the microbial community structures within the WIPP repository and in surrounding groundwaters. Through cultivation and DNA-based identification, the potential activity of these organisms is being inferred, thus leading to a better understanding of their impact on WIPP performance. Members of the three biological domains - Bacteria, Archaea, and Eukarya (in this case, Fungi) - that are associated with WIPP halite have been identified. Thus far, their activity has been limited to aerobic respiration; anaerobic incubations are underway. WIPP halite constitutes the near-field microbial environment. We expect that microbial activity in this setting will proceed from aerobic respiration, through nitrate reduction to focus on sulfate reduction. This is also the current WIPP performance assessment (PA) position. Sulfate reduction can occur at extremely high ionic strengths, and sulfate is available in WIPP brines and in the anhydrite interbeds. The role of methanogenesis in the WIPP remains unclear, due to both energetic constraints imposed by a high-salt environment and substrate selectivity, and it is no longer considered in PA. Archaea identified in WIPP halite thus far fall exclusively within the family Halobacteriaceae. These include Halobacterium noricense, cultivated from both low- and high-salt media, and a Halorubrum-like species. The former has also been detected in other salt mines worldwide; the latter likely constitutes a new species. Little is known of its function, but it was prevalent in experiments investigating the biodegradation of organic complexing agents in WIPP brines. Bacterial signatures associated with WIPP halite include members of the phylum Proteobacteria - Halomonas, Pelomonas, Limnobacter, and Chromohalobacter - but only the latter has been isolated. Also detected and cultivated were Salinicoccus and Nesterenkonia spp. Fungi were also isolated from halite. Although

  6. Status Report on the Microbial Characterization of Halite and Groundwater Samples from the WIPP

    Energy Technology Data Exchange (ETDEWEB)

    Swanson, Juliet S. [Los Alamos National Laboratory; Reed, Donald T. [Los Alamos National Laboratory; Ams, David A. [Los Alamos National Laboratory; Norden, Diana [Ohio State University; Simmons, Karen A. [Los Alamos National Laboratory

    2012-07-10

    This report summarizes the progress made in the ongoing task of characterizing the microbial community structures within the WIPP repository and in surrounding groundwaters. Through cultivation and DNA-based identification, the potential activity of these organisms is being inferred, thus leading to a better understanding of their impact on WIPP performance. Members of the three biological domains - Bacteria, Archaea, and Eukarya (in this case, Fungi) - that are associated with WIPP halite have been identified. Thus far, their activity has been limited to aerobic respiration; anaerobic incubations are underway. WIPP halite constitutes the near-field microbial environment. We expect that microbial activity in this setting will proceed from aerobic respiration, through nitrate reduction to focus on sulfate reduction. This is also the current WIPP performance assessment (PA) position. Sulfate reduction can occur at extremely high ionic strengths, and sulfate is available in WIPP brines and in the anhydrite interbeds. The role of methanogenesis in the WIPP remains unclear, due to both energetic constraints imposed by a high-salt environment and substrate selectivity, and it is no longer considered in PA. Archaea identified in WIPP halite thus far fall exclusively within the family Halobacteriaceae. These include Halobacterium noricense, cultivated from both low- and high-salt media, and a Halorubrum-like species. The former has also been detected in other salt mines worldwide; the latter likely constitutes a new species. Little is known of its function, but it was prevalent in experiments investigating the biodegradation of organic complexing agents in WIPP brines. Bacterial signatures associated with WIPP halite include members of the phylum Proteobacteria - Halomonas, Pelomonas, Limnobacter, and Chromohalobacter - but only the latter has been isolated. Also detected and cultivated were Salinicoccus and Nesterenkonia spp. Fungi were also isolated from halite. Although

  7. Aquatic Sediments.

    Science.gov (United States)

    Sanville, W. D.; And Others

    1978-01-01

    Presents a literature review of aquatic sediments and its effect upon water quality, covering publications of 1976-77. This review includes: (1) sediment water interchange; (2) chemical and physical characterization; and (3) heavy water in sediments. A list of 129 references is also presented. (HM)

  8. Human and animal integrated influenza surveillance: a novel sampling approach for an additional transmission way in the aquatic bird reservoir

    Directory of Open Access Journals (Sweden)

    Mauro Delogu

    2012-06-01

    Full Text Available

    Background: infectious low pathogenic avian influenza viruses (LPaIVs have been recently detected on feathers of wild ducks. Laboratory trial results suggested that the preen oil gland secretion, covering waterbirds’ feathers, may attract and concentrate virus particles from aIV-contaminated waters to birds’ bodies. We evaluated whether ducks can become infected by the ingestion of preen oil-associated viral particles, experimentally smeared on their plumage. In addition, we compared virologic and serologic results obtained from mallards whose feathers were experimentally infected, with those from wild mallards naturally carrying aIVs on feathers.

    Methods: we experimentally coated 7 mallards (anas plathyrynchos using preen oil mixed with a LPaIV (h10n7 subtype, and housed them for 45 days with a control, uncoated duck. cloacal, oropharyngeal and feather swabs were collected from all birds and examined for aIV molecular detection and isolation. Blood samples were also taken to detect influenza specific antibodies. In addition, sera from 10 wild mallards, carrying on feathers infectious LPaIV h10n7, were examined.

    Results: virologic and serologic results indicated that through self- and allopreening all the birds experimentally coated with the preen oil/aIV mix and the control duck ingested viruses covering feathers and became infected. Virus isolation from feathers was up to 32 days post-coating treatment. one out of 8 wild mallards showing antibodies against type a influenza virus was seropositive for h10 subtype too.

    Conclusions: our experimental and field results show evidences suggesting that uninfected birds carrying viruses on their feathers, including immune ones, might play an active role in spreading aIV infection in nature. For this reason, routine aIV surveillance programs, aimed at detecting intestinal and/or respiratory viruses, should

  9. Composition of microbial communities in aerosol, snow and ice samples from remote glaciated areas (Antarctica, Alps, Andes

    Directory of Open Access Journals (Sweden)

    J. Elster

    2007-06-01

    Full Text Available Taxonomical and ecological analyses were performed on micro-autotrophs (cyanobacteria and algae together with remnants of diatom valves, micro-fungi (hyphae and spores, bacteria (rod, cocci and red clusters, yeast, and plant pollen extracted from various samples: Alps snow (Mt. Blank area, Andean snow (Illimani, Bolivia, Antarctic aerosol filters (Dumont d'Urville, Terre Adélie, and Antarctic inland ice (Terre Adélie. Three methods for ice and snow sample's pre-concentration were tested (filtration, centrifugation and lyophilisation. Afterwards, cultivation methods for terrestrial, freshwater and marine microorganisms (micro-autotrophs and micro-fungi were used in combination with liquid and solid media. The main goal of the study was to find out if micro-autotrophs are commonly transported by air masses, and later stored in snow and icecaps around the world. The most striking result of this study was the absence of culturable micro-autotrophs in all studied samples. However, an unusual culturable pigmented prokaryote was found in both alpine snow and aerosol samples. Analyses of many samples and proper statistical analyses (PCA, RDA- Monte Carlo permutation tests showed that studied treatments highly significantly differ in both microbial community and biotic remnants composition F=9.33, p=0.001. In addition, GLM showed that studied treatments highly significantly differ in numbers of categories of microorganisms and remnants of biological material F=11.45, p=0.00005. The Antarctic aerosol samples were characterised by having red clusters of bacteria, the unusual prokaryote and yeasts. The high mountain snow from the Alps and Andes contained much more culturable heterotrophs. The unusual prokaryote was very abundant, as were coccoid bacteria, red clusters of bacteria, as well as yeasts. The Antarctic ice samples were quite different. These samples had higher numbers of rod bacteria and fungal hyphae. The microbial communities and

  10. Microbial flora in organic honey samples of africanized honeybees from Parana river islands

    Directory of Open Access Journals (Sweden)

    Maria Josiane Sereia

    2011-06-01

    Full Text Available The purpose of this study was to verify and compare the main contamination sources and the hygienic/sanitary conditions of organic honey samples of Apis mellifera from Parana River islands. Thirty-three (33 samples were analyzed between January 2005 and August 2006. Eleven (11 samples were collected by beekeepers and twenty-two (22 samples were collected and processed in accordance with ideal personal hygiene norms and good manufacturing practices. The samples underwent microbiological analysis in search of coliforms at 35 ºC and 45 ºC, as well as fungi enumeration analysis. As for fungi counting, the samples harvested by beekeepers showed values above the maximum established by Resolution nº 15/94 of Common Market Group - Mercosul. The results showed that secondary contamination sources are responsible for the reduction of organic honey quality.

  11. Random or systematic sampling to detect a localised microbial contamination within a batch of food

    NARCIS (Netherlands)

    Jongenburger, I.; Reij, M.W.; Boer, E.P.J.; Gorris, L.G.M.; Zwietering, M.H.

    2011-01-01

    Pathogenic microorganisms are known to be distributed heterogeneously in food products that are solid, semi-solid or powdered, like for instance peanut butter, cereals, or powdered milk. This complicates effective detection of the pathogens by sampling. Two-class sampling plans, which are deployed w

  12. Use of Geographical Information Systems to influence the selection of sampling site locations for the evaluation of microbial diversity

    Science.gov (United States)

    Soil microbial population densities can easily reach one billion cells per gram of soil; and soil microbial diversity has been estimated to reach ten thousand individual species per gram of soil. Soil type and underlying soil structure are considered primary determinants of microbial community struc...

  13. Sampling methods for rumen microbial counts by Real-Time PCR techniques

    Directory of Open Access Journals (Sweden)

    S. Puppo

    2010-02-01

    Full Text Available Fresh rumen samples were withdrawn from 4 cannulated buffalo females fed a fibrous diets in order to quantify bacteria concentration in the rumen by Real-Time PCR techniques. To obtain DNA of a good quality from whole rumen fluid, eight (M1-M8 different pre-filtration methods (cheese cloths, glass-fibre and nylon filter in combination with various centrifugation speeds (1000, 5000 and 14,000 rpm were tested. Genomic DNA extraction was performed either on fresh or frozen samples (-20°C. The quantitative bacteria analysis was realized according to Real-Time PCR procedure for Butyrivibrio fibrisolvens reported in literature. M5 resulted the best sampling procedure allowing to obtain a suitable genomic DNA. No differences were revealed between fresh and frozen samples.

  14. Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.

    Directory of Open Access Journals (Sweden)

    Dana Willner

    Full Text Available Barcoded amplicon sequencing is rapidly becoming a standard method for profiling microbial communities, including the human respiratory microbiome. While this approach has less bias than standard cultivation, several steps can introduce variation including the type of DNA extraction method used. Here we assessed five different extraction methods on pediatric bronchoalveolar lavage (BAL samples and a mock community comprised of nine bacterial genera to determine method reproducibility and detection limits for these typically low complexity communities. Additionally, using the mock community, we were able to evaluate contamination and select a relative abundance cut-off threshold based on the geometric distribution that optimizes the trade off between detecting bona fide operational taxonomic units and filtering out spurious ones. Using this threshold, the majority of genera in the mock community were predictably detected by all extraction methods including the hard-to-lyse Gram-positive genus Staphylococcus. Differences between extraction methods were significantly greater than between technical replicates for both the mock community and BAL samples emphasizing the importance of using a standardized methodology for microbiome studies. However, regardless of method used, individual patients retained unique diagnostic profiles. Furthermore, despite being stored as raw frozen samples for over five years, community profiles from BAL samples were consistent with historical culturing results. The culture-independent profiling of these samples also identified a number of anaerobic genera that are gaining acceptance as being part of the respiratory microbiome. This study should help guide researchers to formulate sampling, extraction and analysis strategies for respiratory and other human microbiome samples.

  15. MICROBIAL COUNTS OF DARK RED LATOSOL SAMPLES STORED AT DIFFERENT TEMPERATURES

    Directory of Open Access Journals (Sweden)

    Francisco Cleber Sousa Vieira

    1998-09-01

    Full Text Available The number of colony forming units (CFU of different groups of bacteria and fungi in samples stored at temperatures of 5 to -12oC for 0-32 weeks was evaluated. The number of CFU obtained after the different periods of storage of red latossol soil was compared with the number of colonies obtained immediately after removal of soil samples (time zero. The number of total bacteria and actinomycetes in the samples remained practically unchanged throughout the storage period. The number of Gram-negative bacteria decreased by as much as 69% compared to control, while the number of Bacillus spp and of fungi increased 1.9 to 4.9 times starting from the 12th week in samples stored at 5oC. Except for the variations observed in fungal counts, the remaining groups of bacteria practically showed the same variation in number of colonies in soil samples stored at 5oC and -12oC.

  16. Comparison of three microbial screening methods for antibiotics using routine monitoring samples

    NARCIS (Netherlands)

    Pikkemaat, M.G.; Rapallini, M.; Oostra, S.; Elferink, J.W.A.

    2009-01-01

    Monitoring large numbers of slaughter animals for the presence of antimicrobial residues is preferably carried out using microbiological screening methods, because of their high cost-effectiveness. An evaluation of the Nouws antibiotic test (NAT) was performed on routine monitoring samples and the p

  17. A stepwise procedure for assessment of the microbial respiratory activity of soil samples contaminated with organic compounds.

    Science.gov (United States)

    Eisentraeger, A; Maxam, G; Rila, J P; Dott, W

    2000-09-01

    Soil respiration measurements are used frequently for the characterization of soil samples. Identical methods are used for the ecotoxicological characterization of contaminated soil samples as well as for quantification of the active microbial biomass in agriculturally used soils. In this study four soil samples contaminated with large amounts of volatile organic compounds, polyaromatic hydrocarbons, or nitroaromatic compounds are characterized after stepwise addition of carbon, nitrogen, and phosphorus. The respiration kinetics are assessed over a period of 5 days. By means of qualitative evaluation of the results, it is demonstrated that this stepwise addition allows one to distinguish between growth-promoting effects of biodegradable organic compounds on the one hand and the toxic influence of these compounds on the other hand. Finally it is stated that a comprehensive ecotoxicological characterization cannot be performed routinely using only one or several parameters of respiration curves. There is need for further research and validation if soil respiration measurements are to be performed quantitatively in the future. PMID:10993705

  18. Microbial analyses of clay and water from different samples from the Mont Terri Rock Laboratory (RL), Switzerland

    International Nuclear Information System (INIS)

    Document available in extended abstract form only. Exploration of deep subsurface microbial life has increased for very diverse motives. One of them is that these environments are potential host rocks for radioactive waste repositories and that microorganisms may influence geochemical conditions around such sites and migration properties of radionuclides. The pore water Chemistry experiment (PC) was conducted at the Mont Terri-RL to measure in situ the pH, Eh, and other geochemical parameters within the pore water of the Opalinus Clay formation. The borehole for PC was drilled with N2 under clean but not aseptic conditions, filled immediately with synthetic pore water, which was circulated and monitored for five years. Soon after initiation of PC it was evident that microbial activity affected the borehole water geochemistry. Microbial analyses, including molecular biology and culturing methods, were performed repeatedly during PC (2003-2006), with detailed analysis of water and over-core clay upon termination in 2007. Results indicated the presence of heterotrophic aerobes and anaerobes, nitrate-reducers, iron-reducers, sulphate-reducers and Archaea, which together with geochemical data suggested a reducing environment with sulphate reduction in the water and adjacent clay. A black precipitate containing pyrite and a strong H2S smell confirmed the occurrence of sulphate reduction. Specific species identified (> 98% similarity) in PC water included Pseudomonas stutzeri, Bacillus licheniformis, and Desulfosporosinus sp., with similar and additional species (e.g., Trichococcus sp.; Koccuria sp.) in the clay. The origin of these (mostly anaerobic) species cannot be determined with certainty. Some species likely resulted from contamination, but others could be revived species indigenous in the Opalinus Clay. The microbial processes that occurred in PC are not representative of the processes in the undisturbed formation but illustrate the potential for microbial

  19. The impact of selection, gene conversion, and biased sampling on the assessment of microbial demography

    OpenAIRE

    Lapierre, Marguerite; Blin, Camille; Lambert, Amaury; Achaz, Guillaume; Eduardo P C Rocha

    2016-01-01

    International audience Recent studies have linked demographic changes and epidemiological patterns in bacterial populations using coalescent-based approaches. We identified 26 studies using skyline plots and found that 21 inferred overall population expansion. This surprising result led us to analyze the impact of natural selection, recombination (gene conversion), and sampling biases on demographic inference using skyline plots and site frequency spectra (SFS). Forward simulations based o...

  20. Evaluation of nutrient limitation in aquatic ecosystems with nitrogen fixing bacteria

    Institute of Scientific and Technical Information of China (English)

    WU Gen-fu; WU Xue-chang; XUAN Xiao-dong; ZHOU Xue-ping

    2006-01-01

    There has always been a great need for simple and accurate bioassays for evaluating nutrient limitation in aquatic ecosystems. Whereas organic carbon is usually considered to be the limiting nutrient for microbial growth in many aquatic ecosystems,there are, however, many water sources that are limited by phosphorus or nitrogen. A method named "nitrogen fixing bacterial growth potential" (NFBGP) test, which is based on pre-culturing ofautochthonous (target) microorganisms was described. The method was applied to evaluate phosphorus or nitrogen nutrient limitation in lake and sewage water samples using an isolate of the nitrogen fixing bacterium, Azorhizobium sp. WS6. The results corresponded well to those from the traditional algal growth potential (AGP) test and the bacterial regrowth potential (BRP) test, suggesting that the NFBGP test is a useful supplementary method for evaluating the limiting nutrient, especially phosphorus, in an aquatic environment.

  1. Comparison of filters for concentrating microbial indicators and pathogens in lake-water samples

    Science.gov (United States)

    Francy, Donna S.; Stelzer, Erin A.; Brady, Amie M.G.; Huitger, Carrie; Bushon, Rebecca N.; Ip, Hon S.; Ware, Michael W.; Villegas, Eric N.; Gallardo, Vincent; Lindquist, H.D. Alan

    2013-01-01

    Bacterial indicators are used to indicate increased health risk from pathogens and to make beach closure and advisory decisions; however, beaches are seldom monitored for the pathogens themselves. Studies of sources and types of pathogens at beaches are needed to improve estimates of swimming-associated health risks. It would be advantageous and cost-effective, especially for studies conducted on a regional scale, to use a method that can simultaneously filter and concentrate all classes of pathogens from the large volumes of water needed to detect pathogens. In seven recovery experiments, stock cultures of viruses and protozoa were seeded into 10-liter lake water samples, and concentrations of naturally occurring bacterial indicators were used to determine recoveries. For the five filtration methods tested, the highest median recoveries were as follows: glass wool for adenovirus (4.7%); NanoCeram for enterovirus (14.5%) and MS2 coliphage (84%); continuous-flow centrifugation (CFC) plus Virocap (CFC+ViroCap) for Escherichia coli (68.3%) and Cryptosporidium (54%); automatic ultrafiltration (UF) for norovirus GII (2.4%); and dead-end UF for Enterococcus faecalis (80.5%), avian influenza virus (0.02%), and Giardia (57%). In evaluating filter performance in terms of both recovery and variability, the automatic UF resulted in the highest recovery while maintaining low variability for all nine microorganisms. The automatic UF was used to demonstrate that filtration can be scaled up to field deployment and the collection of 200-liter lake water samples.

  2. Post-Flight Microbial Analysis of Samples from the International Space Station Water Recovery System and Oxygen Generation System

    Science.gov (United States)

    Birmele, Michele N.

    2011-01-01

    The Regenerative, Environmental Control and Life Support System (ECLSS) on the International Space Station (ISS) includes the the Water Recovery System (WRS) and the Oxygen Generation System (OGS). The WRS consists of a Urine Processor Assembly (UPA) and Water Processor Assembly (WPA). This report describes microbial characterization of wastewater and surface samples collected from the WRS and OGS subsystems, returned to KSC, JSC, and MSFC on consecutive shuttle flights (STS-129 and STS-130) in 2009-10. STS-129 returned two filters that contained fluid samples from the WPA Waste Tank Orbital Recovery Unit (ORU), one from the waste tank and the other from the ISS humidity condensate. Direct count by microscopic enumeration revealed 8.38 x 104 cells per mL in the humidity condensate sample, but none of those cells were recoverable on solid agar media. In contrast, 3.32 x lOs cells per mL were measured from a surface swab of the WRS waste tank, including viable bacteria and fungi recovered after S12 days of incubation on solid agar media. Based on rDNA sequencing and phenotypic characterization, a fungus recovered from the filter was determined to be Lecythophora mutabilis. The bacterial isolate was identified by rDNA sequence data to be Methylobacterium radiotolerans. Additional UPA subsystem samples were returned on STS-130 for analysis. Both liquid and solid samples were collected from the Russian urine container (EDV), Distillation Assembly (DA) and Recycle Filter Tank Assembly (RFTA) for post-flight analysis. The bacterium Pseudomonas aeruginosa and fungus Chaetomium brasiliense were isolated from the EDV samples. No viable bacteria or fungi were recovered from RFTA brine samples (N= 6), but multiple samples (N = 11) from the DA and RFTA were found to contain fungal and bacterial cells. Many recovered cells have been identified to genus by rDNA sequencing and carbon source utilization profiling (BiOLOG Gen III). The presence of viable bacteria and fungi from WRS

  3. A supplement to "Methods for collection and analysis of aquatic biological and microbiological samples" (U.S. Geological Survey Techniques of Water-Resources Investigations, Book 5, Chapter A4)

    Science.gov (United States)

    1979-01-01

    The manual contains methods used by the U.S. Geological Survey to collect, preserve, and analyze waters to determine their biological and microbiological properties. It supplements ' Methods for Collection and Analysis of Aquatic Biological and Microbiological Samples ' (TWRI, Book 5, Chapter A4, 1977, edited by P. E. Greeson, T. A. Ehlke, G. A. Irwin, B. W. Lium, and K. V. Slack). Included are 5 new methods, a new section of selected taxonomic references for Ostracoda, and 6 revised methods.

  4. Ecology, Microbial

    Energy Technology Data Exchange (ETDEWEB)

    Konopka, Allan

    2009-03-19

    Microbial ecology is a relatively young discipline within the field of microbiology. Its modern history spans just the past 60 years, and the field is defined by its emphasis on understanding the interactions of microbes with their environment, rather than their behavior under artificial laboratory conditions. Because microbes are ubiquitous, microbial ecologists study a broad diversity of habitats that range from aquatic to terrestrial to plant- or animal-associated. This has made it a challenge to identify unifying principles within the field. One approach is to recognize that although the activity of microbes in nature have effects at the macroscale, they interact with their physical, chemical and biological milieu at a scale of micrometers. At this scale, several different microbial ecosystems can be defined, based upon association with particles, the presence of environmental gradients and the continuous availability of water. Principles applicable to microbial ecology reflect not only their population ecology and physiological ecology, but also their broad versatility and quantitative importance in the biosphere as biogeochemical catalysts and capacity for rapid physiological and evolutionary responses.

  5. A Pilot Study on Integrating Videography and Environmental Microbial Sampling to Model Fecal Bacterial Exposures in Peri-Urban Tanzania.

    Directory of Open Access Journals (Sweden)

    Timothy R Julian

    Full Text Available Diarrheal diseases are a leading cause of under-five mortality and morbidity in sub-Saharan Africa. Quantitative exposure modeling provides opportunities to investigate the relative importance of fecal-oral transmission routes (e.g. hands, water, food responsible for diarrheal disease. Modeling, however, requires accurate descriptions of individuals' interactions with the environment (i.e., activity data. Such activity data are largely lacking for people in low-income settings. In the present study, we collected activity data and microbiological sampling data to develop a quantitative microbial exposure model for two female caretakers in peri-urban Tanzania. Activity data were combined with microbiological data of contacted surfaces and fomites (e.g. broom handle, soil, clothing to develop example exposure profiles describing second-by-second estimates of fecal indicator bacteria (E. coli and enterococci concentrations on the caretaker's hands. The study demonstrates the application and utility of video activity data to quantify exposure factors for people in low-income countries and apply these factors to understand fecal contamination exposure pathways. This study provides both a methodological approach for the design and implementation of larger studies, and preliminary data suggesting contacts with dirt and sand may be important mechanisms of hand contamination. Increasing the scale of activity data collection and modeling to investigate individual-level exposure profiles within target populations for specific exposure scenarios would provide opportunities to identify the relative importance of fecal-oral disease transmission routes.

  6. A Pilot Study on Integrating Videography and Environmental Microbial Sampling to Model Fecal Bacterial Exposures in Peri-Urban Tanzania.

    Science.gov (United States)

    Julian, Timothy R; Pickering, Amy J

    2015-01-01

    Diarrheal diseases are a leading cause of under-five mortality and morbidity in sub-Saharan Africa. Quantitative exposure modeling provides opportunities to investigate the relative importance of fecal-oral transmission routes (e.g. hands, water, food) responsible for diarrheal disease. Modeling, however, requires accurate descriptions of individuals' interactions with the environment (i.e., activity data). Such activity data are largely lacking for people in low-income settings. In the present study, we collected activity data and microbiological sampling data to develop a quantitative microbial exposure model for two female caretakers in peri-urban Tanzania. Activity data were combined with microbiological data of contacted surfaces and fomites (e.g. broom handle, soil, clothing) to develop example exposure profiles describing second-by-second estimates of fecal indicator bacteria (E. coli and enterococci) concentrations on the caretaker's hands. The study demonstrates the application and utility of video activity data to quantify exposure factors for people in low-income countries and apply these factors to understand fecal contamination exposure pathways. This study provides both a methodological approach for the design and implementation of larger studies, and preliminary data suggesting contacts with dirt and sand may be important mechanisms of hand contamination. Increasing the scale of activity data collection and modeling to investigate individual-level exposure profiles within target populations for specific exposure scenarios would provide opportunities to identify the relative importance of fecal-oral disease transmission routes. PMID:26295964

  7. ASSESSMENT OF THE BIODIVERSITY OF SAMPLES USED FOR ISOLATION OF MICROBIAL STRAINS CAPABLE OF CONVERTING STRAW DESTINED AS A SUBSTRATE FOR BIOGAS PLANT

    Directory of Open Access Journals (Sweden)

    Krystyna Cybulska

    2016-01-01

    Full Text Available In biogas plants, almost any type of organic matter can be used as a substrate to produce biogas. To make the process of methane fermentation more effective, these materials are pretreated. This applies in particular to a group of difficult substrates. Straw, due to its hemicellulose structure and saturation, is hardly fermented by biogas reactor microorganisms. The methods of post-harvest residue preparation for anaerobic digestion being applied so far are expensive, while their application has a negative effect on methanoegenic bacteria. Therefore, the microorganisms being able to degrade straw hemicellulose structure, utilisation of which could precede the proper fermentation process, have been searched for. This paper presents the results of microbial biodiversity analysis in the environmental samples being lupin, cereal, rape and maize straw as well as hay and haylage at different degradation stages. The analysis of biodiversity will help at a further stage of study to isolate active microbial strains showing cellulolytic, hemicellulolytic or ligninolytic activity which are desirable in the process of straw biodegradation. Analysis of the microbial count was performed by the method of deep inoculation on different microbiological culture media. The conducted tests include determination of the number of fungi, bacteria and actinomycetes. The results obtained confirm the usefulness of the analysed samples for isolation of microbial strains capable of converting straw preceding the biogas production.

  8. Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress.

    Science.gov (United States)

    Pajares, Silvia; Bonilla-Rosso, German; Travisano, Michael; Eguiarte, Luis E; Souza, Valeria

    2012-08-01

    Microbial communities are responsible for important ecosystem processes, and their activities are regulated by environmental factors such as temperature and solar ultraviolet radiation. Here we investigate changes in aquatic microbial community structure, diversity, and evenness in response to changes in temperature and UV radiation. For this purpose, 15 mesocosms were seeded with both microbial mat communities and plankton from natural pools within the Cuatro Cienegas Basin (Mexico). Clone libraries (16S rRNA) were obtained from water samples at the beginning and at the end of the experiment (40 days). Phylogenetic analysis indicated substantial changes in aquatic community composition and structure in response to temperature and UV radiation. Extreme treatments with elevation in temperature or UV radiation reduced diversity in relation to the Control treatments, causing a reduction in richness and increase in dominance, with a proliferation of a few resistant operational taxonomic units. Each phylum was affected differentially by the new conditions, which translates in a differential modification of ecosystem functioning. This suggests that the impact of environmental stress, at least at short term, will reshape the aquatic bacterial communities of this unique ecosystem. This work also demonstrates the possibility of designing manageable synthetic microbial community ecosystems where controlled environmental variables can be manipulated. Therefore, microbial model systems offer a complementary approach to field and laboratory studies of global research problems associated with the environment. PMID:22460437

  9. Use of Homogeneously-Sized Carbon Steel Ball Bearings to Study Microbially-Influenced Corrosion in Oil Field Samples.

    Science.gov (United States)

    Voordouw, Gerrit; Menon, Priyesh; Pinnock, Tijan; Sharma, Mohita; Shen, Yin; Venturelli, Amanda; Voordouw, Johanna; Sexton, Aoife

    2016-01-01

    Microbially-influenced corrosion (MIC) contributes to the general corrosion rate (CR), which is typically measured with carbon steel coupons. Here we explore the use of carbon steel ball bearings, referred to as beads (55.0 ± 0.3 mg; Ø = 0.238 cm), for determining CRs. CRs for samples from an oil field in Oceania incubated with beads were determined by the weight loss method, using acid treatment to remove corrosion products. The release of ferrous and ferric iron was also measured and CRs based on weight loss and iron determination were in good agreement. Average CRs were 0.022 mm/yr for eight produced waters with high numbers (10(5)/ml) of acid-producing bacteria (APB), but no sulfate-reducing bacteria (SRB). Average CRs were 0.009 mm/yr for five central processing facility (CPF) waters, which had no APB or SRB due to weekly biocide treatment and 0.036 mm/yr for 2 CPF tank bottom sludges, which had high numbers of APB (10(6)/ml) and SRB (10(8)/ml). Hence, corrosion monitoring with carbon steel beads indicated that biocide treatment of CPF waters decreased the CR, except where biocide did not penetrate. The CR for incubations with 20 ml of a produced water decreased from 0.061 to 0.007 mm/yr when increasing the number of beads from 1 to 40. CRs determined with beads were higher than those with coupons, possibly also due to a higher weight of iron per unit volume used in incubations with coupons. Use of 1 ml syringe columns, containing carbon steel beads, and injected with 10 ml/day of SRB-containing medium for 256 days gave a CR of 0.11 mm/yr under flow conditions. The standard deviation of the distribution of residual bead weights, a measure for the unevenness of the corrosion, increased with increasing CR. The most heavily corroded beads showed significant pitting. Hence the use of uniformly sized carbon steel beads offers new opportunities for screening and monitoring of corrosion including determination of the distribution of corrosion rates, which allows

  10. Use of Homogeneously-Sized Carbon Steel Ball Bearings to Study Microbially-Influenced Corrosion in Oil Field Samples

    Science.gov (United States)

    Voordouw, Gerrit; Menon, Priyesh; Pinnock, Tijan; Sharma, Mohita; Shen, Yin; Venturelli, Amanda; Voordouw, Johanna; Sexton, Aoife

    2016-01-01

    Microbially-influenced corrosion (MIC) contributes to the general corrosion rate (CR), which is typically measured with carbon steel coupons. Here we explore the use of carbon steel ball bearings, referred to as beads (55.0 ± 0.3 mg; Ø = 0.238 cm), for determining CRs. CRs for samples from an oil field in Oceania incubated with beads were determined by the weight loss method, using acid treatment to remove corrosion products. The release of ferrous and ferric iron was also measured and CRs based on weight loss and iron determination were in good agreement. Average CRs were 0.022 mm/yr for eight produced waters with high numbers (105/ml) of acid-producing bacteria (APB), but no sulfate-reducing bacteria (SRB). Average CRs were 0.009 mm/yr for five central processing facility (CPF) waters, which had no APB or SRB due to weekly biocide treatment and 0.036 mm/yr for 2 CPF tank bottom sludges, which had high numbers of APB (106/ml) and SRB (108/ml). Hence, corrosion monitoring with carbon steel beads indicated that biocide treatment of CPF waters decreased the CR, except where biocide did not penetrate. The CR for incubations with 20 ml of a produced water decreased from 0.061 to 0.007 mm/yr when increasing the number of beads from 1 to 40. CRs determined with beads were higher than those with coupons, possibly also due to a higher weight of iron per unit volume used in incubations with coupons. Use of 1 ml syringe columns, containing carbon steel beads, and injected with 10 ml/day of SRB-containing medium for 256 days gave a CR of 0.11 mm/yr under flow conditions. The standard deviation of the distribution of residual bead weights, a measure for the unevenness of the corrosion, increased with increasing CR. The most heavily corroded beads showed significant pitting. Hence the use of uniformly sized carbon steel beads offers new opportunities for screening and monitoring of corrosion including determination of the distribution of corrosion rates, which allows

  11. Use of Homogeneously-Sized Carbon Steel Ball Bearings to Study Microbially-Influenced Corrosion in Oil Field Samples

    Directory of Open Access Journals (Sweden)

    Gerrit eVoordouw

    2016-03-01

    Full Text Available Microbially-influenced corrosion (MIC contributes to the general corrosion rate (CR, which is typically measured with carbon steel coupons. Here we explore the use of carbon steel ball bearings, referred to as beads (55.0 ± 0.3 mg; Ø = 0.238 cm, for determining CRs. CRs for samples from an oil field in Oceania incubated with beads were determined by the weight loss method, using acid treatment to remove corrosion products. The release of ferrous and ferric iron was also measured and CRs based on weight loss and iron determination were in good agreement. Average CRs were 0.022 mm/yr for 8 produced waters with high numbers (105/ml of acid-producing bacteria (APB, but no sulfate-reducing bacteria (SRB. Average CRs were 0.009 mm/yr for 5 central processing facility (CPF waters, which had no APB or SRB due to weekly biocide treatment and 0.036 mm/yr for 2 CPF tank bottom sludges, which had high numbers of APB (106/ml and SRB (108/ml. Hence, corrosion monitoring with carbon steel beads indicated that biocide treatment of CPF waters decreased the CR, except where biocide did not penetrate. The CR for incubations with 20 ml of a produced water decreased from 0.061 to 0.007 mm/yr when increasing the number of beads from 1 to 40. CRs determined with beads were higher than those with coupons, possibly also due to a higher weight of iron per unit volume used in incubations with coupons. Use of 1 ml syringe columns, containing carbon steel beads and injected with 10 ml/day of SRB-containing medium for 256 days gave a CR of 0.11 mm/yr under flow conditions. The standard deviation of the distribution of residual bead weights, a measure for the unevenness of the corrosion, increased with increasing CR. The most heavily corroded beads showed significant pitting. Hence the use of uniformly sized carbon steel beads offers new opportunities for screening and monitoring of corrosion including determination of the distribution of corrosion rates, which allows

  12. Composition of microbial communities in aerosol, snow and ice samples from remote glaciated areas (Antarctica, Alps, Andes)

    Czech Academy of Sciences Publication Activity Database

    Elster, Josef; Delmas, R.J.; Petit, J.R.; Řeháková, Klára

    2007-01-01

    Roč. 4, č. 3 (2007), s. 1779-1813. ISSN 1810-6277 R&D Projects: GA ČR GA206/05/0253 Institutional research plan: CEZ:AV0Z60050516 Keywords : microbial assemblages * polar regions Subject RIV: EF - Botanics

  13. How mutualisms arise in phytoplankton communities: building eco-evolutionary principles for aquatic microbes.

    Science.gov (United States)

    Kazamia, Elena; Helliwell, Katherine Emma; Purton, Saul; Smith, Alison Gail

    2016-07-01

    Extensive sampling and metagenomics analyses of plankton communities across all aquatic environments are beginning to provide insights into the ecology of microbial communities. In particular, the importance of metabolic exchanges that provide a foundation for ecological interactions between microorganisms has emerged as a key factor in forging such communities. Here we show how both studies of environmental samples and physiological experimentation in the laboratory with defined microbial co-cultures are being used to decipher the metabolic and molecular underpinnings of such exchanges. In addition, we explain how metabolic modelling may be used to conduct investigations in reverse, deducing novel molecular exchanges from analysis of large-scale data sets, which can identify persistently co-occurring species. Finally, we consider how knowledge of microbial community ecology can be built into evolutionary theories tailored to these species' unique lifestyles. We propose a novel model for the evolution of metabolic auxotrophy in microorganisms that arises as a result of symbiosis, termed the Foraging-to-Farming hypothesis. The model has testable predictions, fits several known examples of mutualism in the aquatic world, and sheds light on how interactions, which cement dependencies within communities of microorganisms, might be initiated. PMID:27282316

  14. Saline-saturated DMSO-EDTA as a storage medium for microbial DNA analysis from coral mucus swab samples

    OpenAIRE

    May, Lisa A.; Higgins, Julie L.; Woodley, Cheryl M.

    2011-01-01

    The mucus surface layer of corals plays a number of integral roles in their overall health and fitness. This mucopolysaccharide coating serves as vehicle to capture food, a protective barrier against physical invasions and trauma, and serves as a medium to host a community of microorganisms distinct from the surrounding seawater. In healthy corals the associated microbial communities are known to provide antibiotics that contribute to the coral’s innate immunity and function metabolic activit...

  15. Variations of Microbial Communities and the Contents and Isotopic Compositions of Total Organic Carbon and Total Nitrogen in Soil Samples during Their Preservation

    Institute of Scientific and Technical Information of China (English)

    TAO Qianye; LI Yumei; WANG Guo'an; QIAO Yuhui; LIU Tung-Sheng

    2009-01-01

    Semi-sealed preservation of soil samples at difierent moisture of 4%and 23%,respectively, was simulated to observe the variations of soil microbiaI communities and determine the contents and isotopic compositions of the total organic carbon and total nitrogen on the 7th and 30th day, respectively.The results show that during preservation,the quantity of microbial communities tended to increase first and then decrease,with a wider variation range at higher moisture(23%).At the moisture content of 23%,the microbial communities became more active on the 7th day.but less after 30 days,and their activity Was stable with little fluctuation at the moisture content of 4%.However. there were no significant changes in the contents and isotopic compositions of the total organic carbon and total nitrogen.During preservation.the responses of soil microbes to the environment are more sensitive to changes in the total nitrogen and organic carbon contents.It is thus suggested that the variations of microbial communities have not exerted remarkable impacts on the isotope compositions of the total nitrogen and total organic carbon.

  16. Comparison of microbial community compositions of injection and production well samples in a long-term water-flooded petroleum reservoir.

    Directory of Open Access Journals (Sweden)

    Hong-Yan Ren

    Full Text Available Water flooding plays an important role in recovering oil from depleted petroleum reservoirs. Exactly how the microbial communities of production wells are affected by microorganisms introduced with injected water has previously not been adequately studied. Using denaturing gradient gel electrophoresis (DGGE approach and 16S rRNA gene clone library analysis, the comparison of microbial communities is carried out between one injection water and two production waters collected from a working block of the water-flooded Gudao petroleum reservoir located in the Yellow River Delta. DGGE fingerprints showed that the similarities of the bacterial communities between the injection water and production waters were lower than between the two production waters. It was also observed that the archaeal composition among these three samples showed no significant difference. Analysis of the 16S rRNA gene clone libraries showed that the dominant groups within the injection water were Betaproteobacteria, Gammaproteobacteria and Methanomicrobia, while the dominant groups in the production waters were Gammaproteobacteria and Methanobacteria. Only 2 out of 54 bacterial operational taxonomic units (OTUs and 5 out of 17 archaeal OTUs in the injection water were detected in the production waters, indicating that most of the microorganisms introduced by the injection water may not survive to be detected in the production waters. Additionally, there were 55.6% and 82.6% unique OTUs in the two production waters respectively, suggesting that each production well has its specific microbial composition, despite both wells being flooded with the same injection water.

  17. Microbial reduction of uranium

    International Nuclear Information System (INIS)

    Reduction of the soluble, oxidized form of uranium, U(VI), to insoluble U(IV) is an important mechanism for the immobilization of uranium in aquatic sediments and for the formation of some uranium ores. U(VI) reduction had generally been regarded as an abiologial reaction in which sulphide, molecular hydrogen or organic compounds function as the reductant. Microbial involvement in U(VI) reduction has been considered to be limited to indirect effects, such as microbial metabolism providing the reduced compounds for abiological U(VI) reduction and microbial cell walls providing a surface to stimulate abiological U(VI) reduction. We report here, however, that dissimilatory Fe(III)-reducing microorganisms can obtain energy for growth by electron transport to U(VI). This novel form of microbial metabolism can be much faster than commonly cited abiological mechanisms for U(VI) reduction. Not only do these findings expand the known potential terminal electron acceptors for microbial energy transduction, they offer a likely explanation for the deposition of uranium in aquatic sediments and aquifers, and suggest a method for biological remediation of environments contaminated with uranium. (author)

  18. Understanding carbon regulation in aquatic systems - Bacteriophages as a model [v1; ref status: indexed, http://f1000r.es/4zd

    Directory of Open Access Journals (Sweden)

    Swapnil Sanmukh

    2015-06-01

    Full Text Available The bacteria and their phages are the most abundant constituents of the aquatic environment, and so represent an ideal model for studying carbon regulation in an aquatic system. The microbe-mediated interconversion of bioavailable organic carbon (OC into dissolved organic carbon (DOC by the microbial carbon pump (MCP has been suggested to have the potential to revolutionize our view of carbon sequestration. It is estimated that DOC is the largest pool of organic matter in the ocean and, though a major component of the global carbon cycle, its source is not yet well understood. A key element of the carbon cycle is the microbial conversion of DOC into inedible forms. The primary aim of this study is to understand the phage conversion from organic to inorganic carbon during phage-host interactions. Time studies of phage-host interactions under controlled conditions reveal their impact on the total carbon content of the samples and their interconversion of organic and inorganic carbon compared to control samples. A total organic carbon (TOC analysis showed an increase in inorganic carbon content by 15-25 percent in samples with bacteria and phage compared to samples with bacteria alone. Compared to control samples, the increase in inorganic carbon content was 60-70-fold in samples with bacteria and phage, and 50-55-fold for samples with bacteria alone. This study indicates the potential impact of phages in regulating the carbon cycle of aquatic systems.

  19. Understanding carbon regulation in aquatic systems - Bacteriophages as a model

    OpenAIRE

    Swapnil Sanmukh; Krishna Khairnar; Waman Paunikar; Satish Lokhande

    2015-01-01

    The bacteria and their phages are the most abundant constituents of the aquatic environment, and so represent an ideal model for studying carbon regulation in an aquatic system. The microbe-mediated interconversion of bioavailable organic carbon (OC) into dissolved organic carbon (DOC) by the microbial carbon pump (MCP) has been suggested to have the potential to revolutionize our view of carbon sequestration. It is estimated that DOC is the largest pool of organic matter in the ocean and, th...

  20. Analysis of Sample Size for Variables Related to Plant, Soil, and Soil Microbial Respiration in a Paddy Rice Field

    OpenAIRE

    Confalonieri, Roberto; Perego, Alessia; CHIODINI Marcello Ermido; SCAGLIA Barbara; ROSENMUND Alexandra; Acutis, Marco

    2009-01-01

    Pre-samplings for sample size determination are strongly recommended to assure the reliability of collected data. However, there is a certain dearth of references about sample size determination in field experiments. Seldom if ever, differences in sample size were identified under different management conditions, plant traits, varieties grown and crop age. In order to analyze any differences in sample size for some of the variables measurable in rice field experiments, the visual jackknife me...

  1. MICROBIAL ENZYME ACTIVITY FOR CHARACTERIZING NUTRIENT LOADING TO GREAT LAKES COASTAL WETLANDS

    Science.gov (United States)

    Energy and material flows in aquatic ecosystems are mediated by microbial carbon and nutrient cycling. Extracellular enzymes produced by the microbial community aid in the degradation of organic matter and the resultant acquisition of limiting nutrients. Organic carbon sequestrat...

  2. Lake Bathymetric Aquatic Vegetation

    Data.gov (United States)

    Minnesota Department of Natural Resources — Aquatic vegetation represented as polygon features, coded with vegetation type (emergent, submergent, etc.) and field survey date. Polygons were digitized from...

  3. Ubiquitous Detection of Artificial Sweeteners and Iodinated X-ray Contrast Media in Aquatic Environmental and Wastewater Treatment Plant Samples from Vietnam, The Philippines, and Myanmar.

    Science.gov (United States)

    Watanabe, Yuta; Bach, Leu Tho; Van Dinh, Pham; Prudente, Maricar; Aguja, Socorro; Phay, Nyunt; Nakata, Haruhiko

    2016-05-01

    Water samples from Vietnam, The Philippines, and Myanmar were analyzed for artificial sweeteners (ASs) and iodinated X-ray contrast media (ICMs). High concentrations (low micrograms per liter) of ASs, including aspartame, saccharin, and sucralose, were found in wastewater treatment plant (WWTP) influents from Vietnam. Three ICMs, iohexol, iopamidol, and iopromide were detected in Vietnamese WWTP influents and effluents, suggesting that these ICMs are frequently used in Vietnam. ASs and ICMs were found in river water from downtown Hanoi at concentrations comparable to or lower than the concentrations in WWTP influents. The ASs and ICMs concentrations in WWTP influents and adjacent surface water significantly correlated (r (2) = 0.99, p < 0.001), suggesting that household wastewater is discharged directly into rivers in Vietnam. Acesulfame was frequently detected in northern Vietnamese groundwater, but the concentrations varied spatially by one order of magnitude even though the sampling points were very close together. This implies that poorly performing domestic septic tanks sporadically leak household wastewater into groundwater. High acesulfame, cyclamate, saccharin, and sucralose concentrations were found in surface water from Manila, The Philippines. The sucralose concentrations were one order of magnitude higher in the Manila samples than in the Vietnamese samples, indicating that more sucralose is used in The Philippines than in Vietnam. Acesulfame and cyclamate were found in surface water from Pathein (rural) and Yangon (urban) in Myanmar, but no ICMs were found in the samples. The ASs concentrations were two-three orders of magnitude lower in the samples from Myanmar than in the samples from Vietnam and The Philippines, suggesting that different amounts of ASs are used in these countries. We believe this is the first report of persistent ASs and ICMs having ubiquitous distributions in economically emerging South Asian countries. PMID:26304512

  4. Carcinogenic hazards in aquatic ecosystems

    Energy Technology Data Exchange (ETDEWEB)

    Black, J.J.

    1979-01-01

    The chemical characterization of contaminants in bottom sediments from the Great Lakes in western New York (Lake Erie) was carried out by applying reversed-phase high-pressure liquid chromatography (HPLC) to fractions derived by routine organic extraction and separation methods. A comparison of the chromatograms from the sediments with those from analogous fractions isolated from tissue samples of aquatic biota showed correlations in the polynuclear aromatic hydrocarbon (PAH) composition. In the HPLC analysis of fractions isolated from sediment, Tubifex worms, aquatic snails, and fish tissue samples clearly indicated a characteristic PAH ''fingerprint' in all segments of the aquatic food chain. The patterns of horizontal distribution of the relative PAH levels indicated a point source of the pollution in the Buffalo River. Feral fish population samples showed several kinds of lesions that appear to be neoplasms. The histology of these lesions is described, and the significance of the data in terms of a possible human health hazard is discussed.

  5. Movement and fate of mercury in an aquatic ecosystem

    International Nuclear Information System (INIS)

    Studies have been initiated of the behaviour and distribution of industrial mercury residues in the aquatic ecosystem represented by the Coatzacoalcos river estuary of Mexico. Mercury concentrations were determined in samples of water, river sediments, aquatic animals, aquatic and river-bank vegetation, local food products and in the hair of local inhabitants. Determinations were made by flameless atomic absorption spectrophotometry and concentrations greater than 50 ppm were found in some samples of bottom muds. (author)

  6. Simultaneous determination of the Cd and Zn total body burden of individual, nearly microscopic, nanoliter-volume aquatic organisms (Hyalella azteca) by rhenium-cup in-torch vaporization (ITV) sample introduction and axially viewed ICP-AES

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Andrea T.; Badiei, Hamid R.; Karanassios, Vassili [University of Waterloo, Department of Chemistry, Waterloo, ON (Canada); Evans, J. Catherine [University of Waterloo, Department of Biology, Waterloo, ON (Canada)

    2004-09-01

    The Cd and Zn total body burden of individual, up to 7-day-old aquatic organisms (Hyalella aztecabenthic amphipod) with an average volume of approximately 100 nL was determined simultaneously by using rhenium-cup (Re-cup) in-torch vaporization (ITV) sample introduction and an axially viewed inductively coupled plasma atomic emission spectrometry (ICP-AES) system. The direct elemental analysis capabilities of this system (i.e., no sample digestion) reduced sample preparation time, eliminated contamination concerns from the digestion reagent and, owing to its detection limits (e.g., in the low pg range for Cd and Zn), vit enabled simultaneous determinations of Cd and Zn in individual, neonate and young juvenile specimens barely visible to the unaided eye (e.g., nearly microscopic). As for calibration, liquid standards and the standard additions method were tested. Both methods gave comparable results, thus indicating that in this case liquid standards can be employed for calibration, and in the process making use of the standard additions method unnecessary. Overall, the ITV-ICP-AES approach by-passed the time-consuming acid digestions, eliminated the potential for contamination from the digestion reagents, improved considerably the speed of acquisition of analytical information and enabled simultaneous determinations of two elements using individual biological specimens. (orig.)

  7. Allelopathy of Aquatic Autotrophs

    OpenAIRE

    Gross, Elisabeth

    2003-01-01

    Allelopathy in aquatic environments may provide a competitive advantage to angiosperms, algae, or cyanobacteria in their interaction with other primary producers. Allelopathy can influence the competition between different photoautotrophs for resources and change the succession of species, for exarnple, in phytoplankton cornmunities. Field evidence and laboratory studies indicate that allelopathy occurs in all aquatic habitats (marine and freshwater), and that ail prirnary producing organisms...

  8. Concentrations of cadmium, lead, and zinc in fish from mining-influenced waters of northeastern Oklahoma: sampling of blood, carcass, and liver for aquatic biomonitoring.

    Science.gov (United States)

    Brumbaugh, William G; Schmitt, Christopher J; May, Thomas W

    2005-07-01

    The Tri-States Mining District (TSMD) of Missouri (MO), Kansas (KS), and Oklahoma (OK), USA, was mined for lead (Pb) and zinc (Zn) for more than a century. Mining ceased more than 30 years ago, but wastes remain widely distributed in the region, and there is evidence of surface- and groundwater contamination in the Spring River-Neosho River (SR-NR) system of northeastern OK. In October 2001, we collected a total of 74 fish from six locations in the SR-NR system that included common carp (Cyprinus carpio), channel- and flathead catfish (Ictalurus punctatus and Pylodictis olivaris), largemouth- and spotted bass (Micropterus salmoides and Micropterus punctulatus), and white crappie (Pomoxis annularis). We obtained additional fish from locations in MO that included three reference sites and one site that served as a "positive control" (heavily contaminated by Pb). Blood, carcass (headed, eviscerated, and scaled) and liver (carp only) samples were analyzed for cadmium (Cd), Pb, and Zn. Our objectives were to assess the degree to which fish from the OK portion of the SR-NR system are contaminated by these elements and to evaluate fish blood sampling for biomonitoring. Concentrations of Cd and Pb in carp and catfish from OK sites were elevated and Pb concentrations of some approached those of the highly contaminated site in MO, but concentrations in bass and crappie were relatively low. For Zn, correlations were weak among concentrations in the three tissues and none of the samples appeared to reflect site contamination. Variability was high for Cd in all three tissues of carp; differences between sites were statistically significant (p < 0.05) only for blood even though mean liver concentrations were at least 100-fold greater than those in blood. Blood concentrations of Cd and Pb were positively correlated (r2 = 0.49 to 0.84) with the concentration of the same element in carp and catfish carcasses or in carp livers, and the corresponding multiple regression models were

  9. Overview of the Chemcatcher® for the passive sampling of various pollutants in aquatic environments Part A: Principles, calibration, preparation and analysis of the sampler.

    Science.gov (United States)

    Charriau, Adeline; Lissalde, Sophie; Poulier, Gaëlle; Mazzella, Nicolas; Buzier, Rémy; Guibaud, Gilles

    2016-02-01

    The passive sampler Chemcatcher(®), which was developed in 2000, can be adapted for various types of water contaminants (e.g., trace metals, polycyclic aromatic hydrocarbons, pesticides and pharmaceutical residues) depending on the materials chosen for the receiving phase and the membrane. The Chemcatcher(®) has been used in numerous research articles in both laboratory experiments and field exposures, and here we review the state-of-the-art in applying this passive sampler. Part A of this review covers (1) the theory upon which the sampler is based (i.e., brief theory, calculation of water concentration, Performance and Reference Compounds), (2) the preparation of the device (i.e., sampler design, choice of the membrane and disk, mounting of the tool), and (3) calibration procedures (i.e., design of the calibration tank, tested parameters, sampling rates). PMID:26653485

  10. Experimental Investigation of Microbially Induced Corrosion of Test Samples and Effect of Self-Assembled Hydrophobic Monolayers. Exposure of Test Samples to Continuous Microbial Cultures, Chemical Analysis, and Biochemical Studies

    Energy Technology Data Exchange (ETDEWEB)

    Laurinavichius, K.S.

    1998-09-30

    The study of biocorrosion of aluminum and beryllium samples were performed under conditions of continuous fermentation of thermophilic anaerobic microorganisms of different groups. This allowed us to examine the effect of various types of metabolic reactions of reduction-oxidation proceeding at different pH and temperatures under highly reduced conditions on aluminum and beryllium corrosion and effect of self-assembled hydrophobic monolayers.

  11. Microbial community composition and endolith colonization at an Arctic thermal spring are driven by calcite precipitation.

    Science.gov (United States)

    Starke, Verena; Kirshtein, Julie; Fogel, Marilyn L; Steele, Andrew

    2013-10-01

    Environmental conditions shape community composition. Arctic thermal springs provide an opportunity to study how environmental gradients can impose strong selective pressures on microbial communities and provide a continuum of niche opportunities. We use microscopic and molecular methods to conduct a survey of microbial community composition at Troll Springs on Svalbard, Norway, in the high Arctic. Microorganisms there exist under a wide range of environmental conditions: in warm water as periphyton, in moist granular materials, and in cold, dry rock as endoliths. Troll Springs has two distinct ecosystems, aquatic and terrestrial, together in close proximity, with different underlying environmental factors shaping each microbial community. Periphyton are entrapped during precipitation of calcium carbonate from the spring's waters, providing microbial populations that serve as precursors for the development of endolithic communities. This process differs from most endolith colonization, in which the rock predates the communities that colonize it. Community composition is modulated as environmental conditions change within the springs. At Troll, the aquatic environments show a small number of dominant operational taxonomic units (OTUs) that are specific to each sample. The terrestrial environments show a more even distribution of OTUs common to multiple samples. PMID:24115614

  12. Ecology of aerobic anoxygenic phototrophs in aquatic environments

    Czech Academy of Sciences Publication Activity Database

    Koblížek, Michal

    2015-01-01

    Roč. 39, č. 6 (2015), s. 854-870. ISSN 0168-6445 R&D Projects: GA ČR GA13-11281S; GA MŠk LO1416 Institutional support: RVO:61388971 Keywords : photoheterotrophs * microbial loop * aquatic food webs Subject RIV: EE - Microbiology, Virology Impact factor: 13.244, year: 2014

  13. Selective nonroutine microbial surveillance of in-use hospital nebulizers by aerosol entrapment and direct sampling analyses of solutions in reservoirs.

    Science.gov (United States)

    Reinhardt, D J; Kennedy, C; Malecka-Griggs, B

    1980-08-01

    Effluent aerosols and liquid reservoir samples from 255 in-use hospital nebulization devices were analyzed by Aero-Test samplers (Olympic Corp.) and direct dilution procedures (0.1-, 0.01-, and 0.001-ml plated samples). Thirty-five percent (89 of 255) of the in-use hospital reservoir samples were positive by direct dilution, and 24% (61 of 255) were positive by Aero- Test samplers. Acinetobacter calcoaceticus var. anitratus was found either alone or in association with Pseudomonas spp. in 50% of all the contaminated in-use reservoirs. This indicates a high endemicity for Acinetobacter in the environment studied. Viable microbes in the reservoirs of contaminated nebulizers ranged from as few as 20 to >2 x 10(5) colony-forming units/ml. Microbial contamination at moderate to heavy levels (1 x 10(4) to >2 x 10(5)) was regularly detected by both procedures. Microbial densities of 10(3) colony-forming units/ml and less in contaminated reservoirs often were negative in the Aero- Test but positive by direct dilution techniques. These hospital-based results were similar to laboratory data obtained with sterile nebulizers intentionally contaminated in graduated densities with either Staphylococcus aureus or Pseudomonas aeruginosa. Sensitivity of the Aero- Test system was best when >/=10(4) colony-forming units/ml were present in the reservoirs of operating nebulizers. The manufacturer suggests that five or less colonies appearing after sampling on Aero- Test plates upon 48-h incubation does not indicate contamination of the reservoir. Our data show that even a single colony, particularly if it is typical, water-associated, gram-negative bacterial species, may well indicate low levels of reservoir contamination. Both the Aero- Test and direct dilution methods indicated the need for more rigorous management of the in-use respiratory therapy equipment in the hospital surveyed. These studies demonstrate the value of selective nonroutine surveillance for identifying potential or

  14. Arsenic speciation in biological environmental samples of aquatic ecosystems by using HPLC-ICP-MS; Speciation von Arsen in biologischen Umweltproben aus aquatischen Oekosystemen mittels HPLC-ICP-MS

    Energy Technology Data Exchange (ETDEWEB)

    Falk, K.

    1999-09-01

    The physicochemical forms of arsenic (arsenic species) which are present in the environment vary significantly with respect to toxicity, bioavailability, stability and transport behaviour. Therefore, it is necessary for an assessment of the toxic potential to humans and the environment to investigate not only the total arsenic concentrations but also to differentiate the single species. By that the knowledge about ecological correlations and pathways will be increased. The present thesis reports the results of a Ph.D. study on the development and optimisation of analytical methods for arsenic speciation and their application to biological samples from different aquatic ecosystems in Germany. The method development included separation of 12 naturally occurring arsenic species by high-performance liquid chromatography (HPLC) followed by an arsenic selective detection by inductively coupled plasma-mass spectrometry (ICP-MS). The arsenic species As (III), As (V), monomethylarsonic acid (MMA), dimethylarsinic acid (DMA), arsenobetaine (AB), arsenocholine (AC), trimethylarsine oxid (TMAO) and tetramethylarsonium (Tetra) were separated with ion-exchange chromatography, whereas reversed-phase chromatography was used for the separation of four arsenosugars. Because of the partly low arsenic concentration in biological samples a very good detection power was required. Therefore, an HPLC-ICP-MS system was tested with different nebulizers. Using the high efficiency nebulizer HHPN (Hydraulic High Pressure Nebulizer), detection limits in the low pg-range could be achieved. The developed analytical methods were applied to arsenic speciation in four marine matrices, which are representative of different trophic levels in the food chain. All samples originated from an ecosystem in the North Sea.

  15. A high-pressure thermal gradient block for investigating microbial activity in multiple deep-sea samples

    DEFF Research Database (Denmark)

    Kallmeyer, J.; Ferdelman, TG; Jansen, KH;

    2003-01-01

    of the sample vessels, a back-pressure system with a constant leak rate was installed. Pressure is applied through high-pressure liquid chromatography (HPLC) pumps that run in constant pressure mode with variable flow rate, thereby regulating any pressure fluctuations. The device allows incubations......Details about the construction and use of a high-pressure thermal gradient block for the simultaneous incubation of multiple samples are presented. Most parts used are moderately priced off-the-shelf components that easily obtainable. In order to keep the pressure independent of thermal expansion...... along a wide range of temperatures and pressures and can easily be modified to accommodate different experiments, either biological or chemical. As an application, we present measurements of bacterial sulfate reduction rates in hydrothermal sediments from Guyamas Basin over a wide range of temperatures...

  16. Random sample consensus combined with partial least squares regression (RANSAC-PLS) for microbial metabolomics data mining and phenotype improvement.

    Science.gov (United States)

    Teoh, Shao Thing; Kitamura, Miki; Nakayama, Yasumune; Putri, Sastia; Mukai, Yukio; Fukusaki, Eiichiro

    2016-08-01

    In recent years, the advent of high-throughput omics technology has made possible a new class of strain engineering approaches, based on identification of possible gene targets for phenotype improvement from omic-level comparison of different strains or growth conditions. Metabolomics, with its focus on the omic level closest to the phenotype, lends itself naturally to this semi-rational methodology. When a quantitative phenotype such as growth rate under stress is considered, regression modeling using multivariate techniques such as partial least squares (PLS) is often used to identify metabolites correlated with the target phenotype. However, linear modeling techniques such as PLS require a consistent metabolite-phenotype trend across the samples, which may not be the case when outliers or multiple conflicting trends are present in the data. To address this, we proposed a data-mining strategy that utilizes random sample consensus (RANSAC) to select subsets of samples with consistent trends for construction of better regression models. By applying a combination of RANSAC and PLS (RANSAC-PLS) to a dataset from a previous study (gas chromatography/mass spectrometry metabolomics data and 1-butanol tolerance of 19 yeast mutant strains), new metabolites were indicated to be correlated with tolerance within certain subsets of the samples. The relevance of these metabolites to 1-butanol tolerance were then validated from single-deletion strains of corresponding metabolic genes. The results showed that RANSAC-PLS is a promising strategy to identify unique metabolites that provide additional hints for phenotype improvement, which could not be detected by traditional PLS modeling using the entire dataset. PMID:26861498

  17. Aquatic Life Benchmarks

    Data.gov (United States)

    U.S. Environmental Protection Agency — The Aquatic Life Benchmarks is an EPA-developed set of criteria for freshwater species. These benchmarks are based on toxicity values reviewed by EPA and used in...

  18. Aquatic Research Laboratory (ARL)

    Data.gov (United States)

    Federal Laboratory Consortium — Columbia River and groundwater well water sources are delivered to the Aquatic Research Laboratory (ARL), where these resources are used to conduct research on fish...

  19. BIOSORPTION OF HYDROPHOBIC ORGANIC POLLUTANTS BY MIXED MICROBIAL POPULATIONS

    Science.gov (United States)

    In recognition of the need to estimate biosorption for natural microbial populations, the variability of partition coefficients for two hydrophobic pollutants to natural populations from a variety of aquatic systems was investigated. Biosorption partition coefficients for pyrene ...

  20. Connecting Water Quality With Air Quality Through Microbial Aerosols

    Science.gov (United States)

    Dueker, M. Elias

    Aerosol production from surface waters results in the transfer of aquatic materials (including nutrients and bacteria) to air. These materials can then be transported by onshore winds to land, representing a biogeochemical connection between aquatic and terrestrial systems not normally considered. In urban waterfront environments, this transfer could result in emissions of pathogenic bacteria from contaminated waters. Despite the potential importance of this link, sources, near-shore deposition, identity and viability of microbial aerosols are largely uncharacterized. This dissertation focuses on the environmental and biological mechanisms that define this water-air connection, as a means to build our understanding of the biogeochemical, biogeographical, and public health implications of the transfer of surface water materials to the near-shore environment in both urban and non-urban environments. The effects of tidal height, wind speed and fog on coastal aerosols and microbial content were first quantified on a non-urban coast of Maine, USA. Culture-based, culture-independent, and molecular methods were used to simultaneously sample microbial aerosols while monitoring meteorological parameters. Aerosols at this site displayed clear marine influence and high concentrations of ecologically-relevant nutrients. Coarse aerosol concentrations significantly increased with tidal height, onshore wind speed, and fog presence. Tidal height and fog presence did not significantly influence total microbial aerosol concentrations, but did have a significant effect on culturable microbial aerosol fallout. Molecular analyses of the microbes settling out of near-shore aerosols provided further evidence of local ocean to terrestrial transport of microbes. Aerosol and surface ocean bacterial communities shared species and in general were dominated by organisms previously sampled in marine environments. Fog presence strengthened the microbial connection between water and land through

  1. DNA Sampling Hook

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The DNA Sampling Hook is a significant improvement on a method of obtaining a tissue sample from a live fish in situ from an aquatic environment. A tissue sample...

  2. Restoring Damaged Aquatic Ecosystems

    OpenAIRE

    Cairns, John

    2006-01-01

    Aquatic ecosystems must play a major role to ensure that water, which is both essential and scarce, is always available for both present and future generations. This has become even more urgent in light of the ongoing increase in total world population and predicted changes in the world climate. Since aquatic ecosystems have been damaged at a rate far in excess of both natural restoration and anthropogenic restoration, it is essential that both restorative processes be accelerated. However, e...

  3. Microbial Metalloproteomics

    Directory of Open Access Journals (Sweden)

    Peter-Leon Hagedoorn

    2015-12-01

    Full Text Available Metalloproteomics is a rapidly developing field of science that involves the comprehensive analysis of all metal-containing or metal-binding proteins in a biological sample. The purpose of this review is to offer a comprehensive overview of the research involving approaches that can be categorized as inductively coupled plasma (ICP-MS based methods, X-ray absorption/fluorescence, radionuclide based methods and bioinformatics. Important discoveries in microbial proteomics will be reviewed, as well as the outlook to new emerging approaches and research areas.

  4. Microbial Community and Urban Water Quality

    Institute of Scientific and Technical Information of China (English)

    YANG Jun; ZHANG Yongyu; LIU Lemian; WANG Changfu; YU Xiaoqing

    2012-01-01

    Urbanization of China is substantial and growing, and water resources are crucial for both economic and social sustainable development. Unfortunately, the frequency and intensity of water contamination events are increasing at an unprecedented rate and often accompanied by increased pollutant loading due to human activities such as irreversible industrialization and urbanization. The impacts of human pollution are most evident and of greatest concern at the microbial level. The research of the Aquatic Ecohealth Group, Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, has been focusing mainly on aquatic microorganisms in the urban environment, from drinking water and landscape water to waste water. Its projects fall into three categories: biomonitoring and bioassessment, microbial ecology and diversity, ecotoxicology and environmental microbiology. Its scientific topics include the aquatic ecological safety and microbial food web.

  5. Pre-fractionated Microbial Samples – The Second Generation Natural Products Library at Wyeth

    Directory of Open Access Journals (Sweden)

    Melissa M. Wagenaar

    2008-06-01

    Full Text Available From the beginning of the antibiotic era in the 1940s to the present, Wyeth has sustained an active research program in the area of natural products discovery. This program has continually evolved through the years in order to best align with the “current” drug discovery paradigm in the pharmaceutical industry. The introduction of highthroughput screening and the miniaturization of assays have created a need to optimize natural product samples to better suit these new technologies. Furthermore, natural product programs are faced with an ever shortening time period from hit detection to lead characterization. To address these issues, Wyeth has created a pre-fractionated natural products library using reversed-phase HPLC to complement their existing library of crude extracts. The details of the pre-fractionated library and a cost-benefit analysis will be presented in this review.

  6. Aquatic Bird Bornavirus 1 in Wild Geese, Denmark

    DEFF Research Database (Denmark)

    Thomsen, Anders F.; Nielsen, Jesper B.; Hjulsager, Charlotte Kristiane; Chriél, Mariann; Smith, Dale A; Bertelsen, Mads F.

    2015-01-01

    To investigate aquatic bird bornavirus 1 in Europe, we examined 333 brains from hunter-killed geese in Denmark in 2014. Seven samples were positive by reverse transcription PCR and were 98.2%-99.8% identical; they were also 97.4%-98.1% identical to reference strains of aquatic bird bornavirus 1...

  7. Microbial heterotrophic metabolic rates constrain the microbial carbon pump

    Digital Repository Service at National Institute of Oceanography (India)

    Robinson, C.; Ramaiah, N.

    .Rev.Microbiol.8, 593 (2010). 2. T. Nagata, in MicrobialEcologyoftheOceans D.L. Kirchman Ed. (John Wiley & Sons, Inc. NewYork, ed. 1. 2000),pp. 121–152. 3. D. F. Gruber, J. P. Simjouw, S. P. Seitzinger, and G. L.Taghon, Appl.Environ. Microbiol. 72, 4184 (2006). 4....W. Pohlman, J. E. Bauer,W. F.Waite, C. L. Osburn, N. R. Chapman, Nat. Geosci. 4, 37 (2011). 8. C. Robinson, in MicrobialEcologyoftheOceans D.L. Kirchman Ed. (John Wiley & Sons, Inc. ed. 2. 2008),pp. 299–334. 9. J. M. Gasol etal., Aquat.Microb.Ecol. 53, 21...

  8. Subglacial Lake Whillans microbial biogeochemistry: a synthesis of current knowledge.

    Science.gov (United States)

    Mikucki, J A; Lee, P A; Ghosh, D; Purcell, A M; Mitchell, A C; Mankoff, K D; Fisher, A T; Tulaczyk, S; Carter, S; Siegfried, M R; Fricker, H A; Hodson, T; Coenen, J; Powell, R; Scherer, R; Vick-Majors, T; Achberger, A A; Christner, B C; Tranter, M

    2016-01-28

    Liquid water occurs below glaciers and ice sheets globally, enabling the existence of an array of aquatic microbial ecosystems. In Antarctica, large subglacial lakes are present beneath hundreds to thousands of metres of ice, and scientific interest in exploring these environments has escalated over the past decade. After years of planning, the first team of scientists and engineers cleanly accessed and retrieved pristine samples from a West Antarctic subglacial lake ecosystem in January 2013. This paper reviews the findings to date on Subglacial Lake Whillans and presents new supporting data on the carbon and energy metabolism of resident microbes. The analysis of water and sediments from the lake revealed a diverse microbial community composed of bacteria and archaea that are close relatives of species known to use reduced N, S or Fe and CH4 as energy sources. The water chemistry of Subglacial Lake Whillans was dominated by weathering products from silicate minerals with a minor influence from seawater. Contributions to water chemistry from microbial sulfide oxidation and carbonation reactions were supported by genomic data. Collectively, these results provide unequivocal evidence that subglacial environments in this region of West Antarctica host active microbial ecosystems that participate in subglacial biogeochemical cycling. PMID:26667908

  9. AQUATIC FUNGI FROM NORTH MAHARASHTRA-VI

    Directory of Open Access Journals (Sweden)

    Wagh S. N.

    2014-07-01

    Full Text Available The paper deals with five species of aquatic fungi belonging to four genera of hyphomycetes isolated from foam samples collected from Rangawali river of Nandurbar district. The foam spora of this region represents mixture of both tropical and temperate species. Brief notes and illustration are givn for each taxon. Geographical distribution of each species of India is also provided.

  10. Sustaining America's Aquatic Biodiversity. Why is Aquatic Biodiversity Declining?

    OpenAIRE

    Helfrich, Louis A.; Neves, Richard J.; Parkhurst, James A. (James Albert)

    2005-01-01

    Discusses reasons for declining aquatic biodiversity and focuses mainly on the issues of habitat loss, introduced species (aquatic exotics), and water pollution; document also includes web links to more information on exotic, invasive species and endangered animals.

  11. Aquatic macroinvertebrates of the Jablanica river, Serbia

    Directory of Open Access Journals (Sweden)

    Stefanović Katarina S.

    2009-01-01

    Full Text Available Research on the community of aquatic macroinvertebrates was carried out during 2005 and 2006 at four sampling sites along the Jablanica River, a right-hand tributary of the Kolubara River. Fifty-seven taxa were recorded in the course of the investigation. The most diverse group was Ephemeroptera, followed by Trichoptera and Plecoptera. Members of the Rhitrogena semicolorata group were the most abundant. Our results could be the basis for evaluation of the influence of damming of the Jablanica River on the status of its water and can serve as a model for studying the influ­ence of hydromorphological degradation of aquatic ecosystems.

  12. Factors influencing the diversity of iron uptake systems in aquatic microorganisms

    Directory of Open Access Journals (Sweden)

    Dhwani K Desai

    2012-10-01

    Full Text Available AbstractIron (Fe is an essential micronutrient for many processes in all living cells. Dissolved iron concentrations in the ocean are of the order of a few nM, and Fe is often a factor limiting primary production. Bioavailability of Fe in aquatic environments is believed to be primarily controlled through chelation by Fe-binding ligands. Marine microbes have evolved different mechanisms to cope with the scarcity of bioavailable dissolved Fe (dFe. Gradients in dFe concentrations and quality of the Fe-ligand pool from coastal to open ocean waters havepresumably imposed selection pressures that should be reflected in the genomes of microbial communities inhabiting the pelagic realm. We applied a hidden Markov model (HMM-based search for proteins related to cellular iron metabolism, and in particular those involved in Fe uptake mechanisms in 164 microbial genomes belonging to diverse taxa and occupying different aquatic niches. A multivariate statistical approach demonstrated that in phototrophic organisms, there is a clear influence of the ecological niche on the diversity of Fe uptake systems. Extending the analyses to the metagenome database from the Global Ocean Sampling expedition (GOS, we demonstrated that the Fe uptake and homeostasis mechanisms differed significantly across marine niches defined by temperatures and dFe concentrations, and that this difference was linked to the distribution of microbial taxa in these niches. Using the dN/dS ratios (which signify the rate of non-synonymous mutations of the nucleotide sequences, we identified that genes encoding for TonB, Ferritin, Ferric reductase, IdiA, ZupT and Fe2+ transport proteins FeoA and FeoB were evolving at a faster rate (positive selection pressure while genes encoding ferrisiderophore/heme/Vitamin B12 uptake systems, siderophore biosynthesis, and IsiA and IsiB were under purifying selection pressure (evolving slowly.

  13. Contaminated Aquatic Sediments.

    Science.gov (United States)

    Jaglal, Kendrick

    2016-10-01

    A review of the literature published in 2015 relating to the assessment, evaluation and remediation of contaminated aquatic sediments is presented. The review is divided into the following main sections: policy and guidance, methodology, distribution, fate and transport, risk, toxicity and remediation. PMID:27620103

  14. Aquatic Environment 2000

    DEFF Research Database (Denmark)

    Svendsen, L. M.; Bijl, L. van der; Boutrup, S.; Iversen, T. M.; Ellermann, T.; Hovmand, M. F.; Bøgestrand, J.; Grant, R.; Hansen, J.; Jensen, J. P.; Stockmarr, J.; Laursen, K. D.

    The report summarizes the results of the Danish Aquatic Monitoring and Assessment Programme 1998-2003. Danish Environmental Protection Agency 2000: NOVA-2003. Programbeskrivelse for det nationale program for overvågning af vandmiljøet 1998-2003. 397 pp. - Redegørelse fra Miljøstyrelsen nr. 1 (in...

  15. The Total Arsenic Concentrations of Aquatic Products and the Assessment of Arsenic Intake from Aquatic Products in Guangzhou, China

    Directory of Open Access Journals (Sweden)

    Yu Guang-Hui

    2015-07-01

    Full Text Available The aim of this study was to assess the contribution of aquatic products consumed by the resident to the daily dietary arsenic intakes of the residents of Guangzhou of Guangdong province in China. All aquatic products were sampled from supermarkets and terminal markets. Accuracy was assured using standard reference material (GBW08551 and recovery experiments. Total arsenic concentrations of aquatic products were determined after acid digestion by hydride generation atomic fluorescent spectrometry. A wide range of arsenic concentration (0.0075-1.2017 mg/kg was found among the various aquatic products, the mean arsenic concentration in aquatic production was 0.2022 mg/kg. The arsenic concentrations of various aquatic products groups were as follows: Crustacean (0.3176±0.2324 mg/kg >Mollusk fish (0.1979±0.2013 mg/k >Saltwater fish (0.1558±0.1119 mg/kg >Freshwater fish (0.1374±0.0970 mg/kg. The range of daily dietary arsenic intake of various residents through the consumption of aquatic products was 5.96-11.85 µg/day. The freshwater fish had the largest contribution to the daily dietary arsenic intakes from aquatic products in all type aquatic products, accounted for around 50%.

  16. Ecotoxicity assessment on microbial water purifying agents by aquatic organism%水生生物在评价微生物水质改良剂的生态毒性中的应用

    Institute of Scientific and Technical Information of China (English)

    张续; 刘锋平; 潘力军

    2015-01-01

    [Objective] To investigate the acute toxicity effects of microbial water purifying agents on zebrafish and daphnia magna,provide the basis information for its safety in use.[Methods] Zebrafish and daphnia magna were exposed to the different concentration testing diluents water for 48 hours,and the profit-logarithm graphical method was used to calculate the Lethal Concentration 50 (LC50) for both 24 hours and 48 hours.[Results] At the exposure endpoint of 24 hours and 48 hours,the LC50 value for zebrafish was 15.66% and 9.85% respectively.As for the daphnia magna,the 24 hours LC50 value was 6.3% and the 48 hours LC50 was 3.13%.[Conclusion] The acute toxicity of microbial water purifying agents is low in zebrafish and daphnia magna,however,its chronic toxicity is still unclear and needs further study.%目的 探讨微生物型水质改良剂对斑马鱼和大型溞的急性毒性,为其安全使用提供依据.方法 将斑马鱼、大型溞分别暴露于不同浓度的水质改良剂稀释液中48 h,用概率单位图解法计算受试物对两种生物24 h、48 h的半数致死浓度(LC50).结果 受试物对斑马鱼24、48 h的LC50分别为15.66%和9.85%,对大型溞24、48 h的LC50分别为6.30%和3.13%.结论 微生物水质改良剂对斑马鱼及大型溞的急性毒性作用较小,但对其慢性毒性仍需进行研究.

  17. Aquatic Pest Control. Manual 99.

    Science.gov (United States)

    Missouri Univ., Columbia. Agricultural Experiment Station.

    This training manual provides information needed to meet the minimum EPA standards for certification as a commercial applicator of pesticides in the aquatic pest control category. The text discusses various water use situations; aquatic weed identification; herbicide use and effects; and aquatic insects and their control. (CS)

  18. Introduced aquatic plants and algae

    Science.gov (United States)

    Non-native aquatic plants such as waterhyacinth and hydrilla severely impair the uses of aquatic resources including recreational faculties (lakes, reservoirs, rivers) as well as timely delivery of irrigation water for agriculture. Costs associated with impacts and management of all types of aquatic...

  19. Selenium in aquatic habitats at Imperial National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — During 1991 and 1992, selenium levels were studied in aquatic communities at Imperial National Wildlife Refuge on the lower Colorado River. Composite samples of...

  20. Ocean microbial metagenomics

    Science.gov (United States)

    Kerkhof, Lee J.; Goodman, Robert M.

    2009-09-01

    Technology for accessing the genomic DNA of microorganisms, directly from environmental samples without prior cultivation, has opened new vistas to understanding microbial diversity and functions. Especially as applied to soils and the oceans, environments on Earth where microbial diversity is vast, metagenomics and its emergent approaches have the power to transform rapidly our understanding of environmental microbiology. Here we explore select recent applications of the metagenomic suite to ocean microbiology.

  1. Characterizing Microbial Community and Geochemical Dynamics at Hydrothermal Vents Using Osmotically Driven Continuous Fluid Samplers

    Energy Technology Data Exchange (ETDEWEB)

    Robidart, Julie C.; Callister, Stephen J.; Song, Peng F.; Nicora, Carrie D.; Wheat, Charles G.; Girguis, Peter R.

    2013-05-07

    Microbes play a key role in mediating all aquatic biogeochemical cycles, and ongoing efforts are aimed at better understanding the relationships between microbial phylogenetic and physiological diversity, and habitat physical and chemical characteristics. Establishing such relationships is facilitated by sampling and studying microbiology and geochemistry at the appropriate spatial and temporal scales, to access information on the past and current environmental state that contributes to observed microbial abundances and activities. A modest number of sampling systems exist to date, few of which can be used in remote, harsh environments such as hydrothermal vents, where the ephemeral nature of venting underscores the necessity for higher resolution sampling. We have developed a robust, continuous fluid sampling system for co-registered microbial and biogeochemical analyses. The osmosis-powered bio-osmosampling system (BOSS) use no electricity, collects fluids with daily resolution or better, can be deployed in harsh, inaccessible environments and can sample fluids continuously for up to five years. Here we present a series of tests to examine DNA, RNA and protein stability over time, as well as material compatability, via lab experiments. We also conducted two field deployments at deep-sea hydrothermal vents to assess changes in microbial diversity and protein expression as a function of the physico-chemical environment. Our data reveal significant changes in microbial community composition co-occurring with relatively modest changes in the geochemistry. These data additionally provide new insights into the distribution of an enigmatic sulfur oxidizing symbiont in its free-living state. Data from the second deployment reveal differences in the representation of peptides over time, underscoring the utility of the BOSS in meta-proteomic studies. In concert, these data demonstrate the efficacy of this approach, and illustrate the value of using this method to study

  2. Adaption of the microbial community to continuous exposures of multiple residual antibiotics in sediments from a salt-water aquacultural farm.

    Science.gov (United States)

    Xi, Xiuping; Wang, Min; Chen, Yongshan; Yu, Shen; Hong, Youwei; Ma, Jun; Wu, Qian; Lin, Qiaoyin; Xu, Xiangrong

    2015-06-15

    Residual antibiotics from aquacultural farming may alter microbial community structure in aquatic environments in ways that may adversely or positively impact microbially-mediated ecological functions. This study investigated 26 ponds (26 composited samples) used to produce fish, razor clam and shrimp (farming and drying) and 2 channels (10 samples) in a saltwater aquacultural farm in southern China to characterize microbial community structure (represented by phospholipid fatty acids) in surface sediments (0-10 cm) with long-term exposure to residual antibiotics. 11 out of 14 widely-used antibiotics were quantifiable at μg kg(-1) levels in sediments but their concentrations did not statistically differ among ponds and channels, except norfloxacin in drying shrimp ponds and thiamphenicol in razor clam ponds. Concentrations of protozoan PLFAs were significantly increased in sediments from razor clam ponds while other microbial groups were similar among ponds and channels. Both canonical-correlation and stepwise-multiple-regression analyses on microbial community and residual antibiotics suggested that roxithromycin residuals were significantly related to shifts in microbial community structure in sediments. This study provided field evidence that multiple residual antibiotics at low environmental levels from aquacultural farming do not produce fundamental shifts in microbial community structure. PMID:25746569

  3. Aquatic Ecology Section

    International Nuclear Information System (INIS)

    Population studies were concerned with predicting long-term consequences of mortality imposed on animal populations by man's activities. These studies consisted of development of a generalized life cycle model and an empirical impingement model for use in impact analysis. Chemical effects studies were conducted on chlorine minimization; fouling by the Asiatic clam; identification of halogenated organics in cooling water; and effects of halogenated organics in cooling systems on aquatic organisms. Ecological transport studies were conducted on availability of sediment-bound 137Cs and 60Co to fish; 137Cs and 60Co in White Oak Lake fish; and chromium levels in fish from a lake chronically contaminated with chromates from cooling towers. Progress is also reported on the following: effects of irradiation on thermal tolerance of mosquito fish; toxicity of nickel to the developing eggs and larvae of carp; accumulation of selected heavy metals associated with fly ash; and environmental monitoring of aquatic ecosystems

  4. Increases in the abundance of microbial genes encoding halotolerance and photosynthesis along a sediment salinity gradient

    Directory of Open Access Journals (Sweden)

    T. C. Jeffries

    2011-07-01

    Full Text Available Biogeochemical cycles are driven by the metabolic activity of microbial communities, yet the environmental parameters that underpin shifts in the functional potential coded within microbial community genomes are still poorly understood. Salinity is one of the primary determinants of microbial community structure and can vary strongly along gradients within a variety of habitats. To test the hypothesis that shifts in salinity will also alter the bulk biogeochemical potential of aquatic microbial assemblages, we generated four metagenomic DNA sequence libraries from sediment samples taken along a continuous, natural salinity gradient in the Coorong lagoon, Australia, and compared them to physical and chemical parameters. A total of 392483 DNA sequences obtained from four sediment samples were generated and used to compare genomic characteristics along the gradient. The most significant shifts along the salinity gradient were in the genetic potential for halotolerance and photosynthesis, which were more highly represented in hypersaline samples. At these sites, halotolerance was achieved by an increase in genes responsible for the acquisition of compatible solutes – organic chemicals which influence the carbon, nitrogen and methane cycles of sediment. Photosynthesis gene increases were coupled to an increase in genes matching Cyanobacteria, which are responsible for mediating CO2 and nitrogen cycles. These salinity driven shifts in gene abundance will influence nutrient cycles along the gradient, controlling the ecology and biogeochemistry of the entire ecosystem.

  5. Aeromonas spp. and microbial indicators in raw drinking water source Aeromonas sp. e indicadores microbiológicos em fontes de água não tratada

    OpenAIRE

    Marisa Di Bari; Hachich, Elayse M.; Adalgisa M.J. Melo; Sato, Maria I. Z.

    2007-01-01

    Aeromonas species are autochtonous in the aquatic environment and some of them have been associated with health effects like wound infections, septicemia and diarrhoeal illness. In this study, the occurrence of Aeromonas spp. and microbial indicators in raw drinking water from wells, springs, fountains and mineral waters was evaluated. A total of 126 water samples was analyzed for Aeromonas spp. by the membrane filtration technique using ADA media and by P/A test. Typical colonies of Aeromona...

  6. Microbial Ecology at an Arctic Geothermal Spring

    Science.gov (United States)

    Starke, V.; Fogel, M. L.; Steele, A.; Arctic Mars Analog Svalbard Expedition (Amase)

    2011-12-01

    A critical question in microbial ecology concerns how variations in environmental conditions affect microbial community makeup. Arctic thermal springs provide an exceptional opportunity to study this question because they have very steep gradients in temperature, moisture, and mobility that place strong selective pressures on microorganisms. Troll Springs, located near 79°23'N, 13°26E in the Svalbard archipelago north of Norway, is one of the northernmost documented thermal springs on land. Precipitation of travertine (calcium carbonate) from Troll's carbonate-rich waters has built a complex terrace structure. Biological materials are present at all levels of the spring structure. To investigate this microbial community in detail, we analyzed DNA extracted from wet biofilms, granular samples and endoliths with 454 parallel-tagged pyrosequencing and automated ribosomal intergenic spacer analysis (ARISA). The aim is to provide a comprehensive overview of how the community at Troll Springs changes over the gradients in environmental conditions present. The 454 and ARISA data were analyzed using multivariate methods, including non-metric multidimensional scaling (nMDS). Results show a gradual transition in the makeup of the microbial community as the environment changes from aquatic to lithologic. These observations suggest a mechanism by which the rocks are colonized by microorganisms: biofilm becomes entrapped during carbonate precipitation. Use of a range of parameters and techniques in the data processing and multidimensional scaling provides additional insight into how community makeup varies across the environments present at the spring. Some more adaptable species are found across most environments, but change markedly in abundance as the conditions change. Other less adaptable species are found in fewer environments, being wholly absent in most. Continued analysis will help reveal which species are the most adaptable, and how their adaptive capabilities

  7. Confirmation of irradiation processing doses for controlling microflora in frozen aquatic products

    International Nuclear Information System (INIS)

    Based on the research results and existing references in the hygienic standard and technique code of frozen aquatic products, a conclusion is made that the irradiation dose of 4-7 kGy could ensure bacteria count less than 5 x 104 cfu/g and no pathogen microbial detected when microbial count in the products is less than 5 x 106 cfu/g before irradiation. The irradiation dose of 4-7 kGy could be used in establishing irradiation sterilization practice for control microflora of frozen aquatic products. (authors)

  8. Tool use by aquatic animals

    OpenAIRE

    Mann, Janet; Patterson, Eric M.

    2013-01-01

    Tool-use research has focused primarily on land-based animals, with less consideration given to aquatic animals and the environmental challenges and conditions they face. Here, we review aquatic tool use and examine the contributing ecological, physiological, cognitive and social factors. Tool use among aquatic animals is rare but taxonomically diverse, occurring in fish, cephalopods, mammals, crabs, urchins and possibly gastropods. While additional research is required, the scarcity of tool ...

  9. Analysis of sample preparation procedures for enumerating fecal coliforms in coarse southwestern U.S. bottom sediments by the most-probable-number method.

    OpenAIRE

    Doyle, J D; Tunnicliff, B; Kramer, R E; Brickler, S K

    1984-01-01

    The determination of bacterial densities in aquatic sediments generally requires that a dilution-mixing treatment be used before enumeration of organisms by the most-probable-number fermentation tube method can be done. Differential sediment and organism settling rates may, however, influence the distribution of the microbial population after the dilution-mixing process, resulting in biased bacterial density estimates. For standardization of sample preparation procedures, the influence of set...

  10. Diversity and Distribution of Aquatic Insects in Streams of the Mae Klong Watershed, Western Thailand

    OpenAIRE

    Witwisitpong Maneechan; Taeng On Prommi

    2015-01-01

    The distribution and diversity of aquatic insects and water quality variables were studied among three streams of the Mae Klong Watershed. In each stream, two sites were sampled. Aquatic insects and water quality variables were randomly sampled seven times in February, May, September, and December 2010 and in January, April, and May 2011. Overall, 11,153 individuals belonging to 64 families and nine orders were examined. Among the aquatic insects collected from the three streams, the order Tr...

  11. UFA Auction Sampling Data

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Between 1984 January - 2002 June, personnel from NMFS/PIFSC/FRMD/FMB/FMAP and Hawaii Department of Aquatic Resources (DAR) conducted port sampling at the United...

  12. Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania.

    Science.gov (United States)

    Trexler, Ryan; Solomon, Caroline; Brislawn, Colin J; Wright, Justin R; Rosenberger, Abigail; McClure, Erin E; Grube, Alyssa M; Peterson, Mark P; Keddache, Mehdi; Mason, Olivia U; Hazen, Terry C; Grant, Christopher J; Lamendella, Regina

    2014-01-01

    Hydraulic fracturing and horizontal drilling have increased dramatically in Pennsylvania Marcellus shale formations, however the potential for major environmental impacts are still incompletely understood. High-throughput sequencing of the 16S rRNA gene was performed to characterize the microbial community structure of water, sediment, bryophyte, and biofilm samples from 26 headwater stream sites in northwestern Pennsylvania with different histories of fracking activity within Marcellus shale formations. Further, we describe the relationship between microbial community structure and environmental parameters measured. Approximately 3.2 million 16S rRNA gene sequences were retrieved from a total of 58 samples. Microbial community analyses showed significant reductions in species richness as well as evenness in sites with Marcellus shale activity. Beta diversity analyses revealed distinct microbial community structure between sites with and without Marcellus shale activity. For example, operational taxonomic units (OTUs) within the Acetobacteracea, Methylocystaceae, Acidobacteriaceae, and Phenylobacterium were greater than three log-fold more abundant in MSA+ sites as compared to MSA- sites. Further, several of these OTUs were strongly negatively correlated with pH and positively correlated with the number of wellpads in a watershed. It should be noted that many of the OTUs enriched in MSA+ sites are putative acidophilic and/or methanotrophic populations. This study revealed apparent shifts in the autochthonous microbial communities and highlighted potential members that could be responding to changing stream conditions as a result of nascent industrial activity in these aquatic ecosystems. PMID:25408683

  13. Assessing Impacts of Unconventional Natural Gas Extraction on Microbial Communities in Headwater Stream Ecosystems in Northwestern Pennsylvania

    Directory of Open Access Journals (Sweden)

    Ryan eTrexler

    2014-11-01

    Full Text Available Hydraulic fracturing and horizontal drilling have increased dramatically in Pennsylvania Marcellus shale formations, however the potential for major environmental impacts are still incompletely understood. High-throughput sequencing of the 16S rRNA gene was performed to characterize the microbial community structure of water, sediment, bryophyte, and biofilm samples from 26 headwater stream sites in northwestern Pennsylvania with different histories of fracking activity within Marcellus shale play. Further, we describe the relationship between microbial community structure and environmental parameters measured. Approximately 3.2 million 16S rRNA gene sequences were retrieved from a total of 58 samples. Microbial community analyses showed significant reductions in species richness as well as evenness in sites with Marcellus shale activity (MSA+. Beta diversity analyses revealed distinct microbial community structure between sites with and without Marcellus shale activity (MSA-. For example, OTUs within the Acetobacteracea, Methylocystaceae, Acidobacteriaceae, and Phenylobacterium were greater than three log-fold more abundant in MSA+ sites as compared to MSA- sites. Further, several of these OTUs were strongly negatively correlated with pH and positively correlated with the number of wellpads in a watershed. It should be noted that many of the OTUs enriched in MSA+ sites are putative acidophilic and/or methanotrophic populations. This study revealed apparent shifts in the autochthonous microbial communities and highlighted potential members that could be responding to changing stream conditions as a result of nascent industrial activity in these aquatic ecosystems.

  14. Antibiotics promote aggregation within aquatic bacterial communities.

    Science.gov (United States)

    Corno, Gianluca; Coci, Manuela; Giardina, Marco; Plechuk, Sonia; Campanile, Floriana; Stefani, Stefania

    2014-01-01

    The release of antibiotics (AB) into the environment poses several threats for human health due to potential development of AB-resistant natural bacteria. Even though the use of low-dose antibiotics has been promoted in health care and farming, significant amounts of AB are observed in aquatic environments. Knowledge on the impact of AB on natural bacterial communities is missing both in terms of spread and evolution of resistance mechanisms, and of modifications of community composition and productivity. New approaches are required to study the response of microbial communities rather than individual resistance genes. In this study a chemostat-based experiment with 4 coexisting bacterial strains has been performed to mimicking the response of a freshwater bacterial community to the presence of antibiotics in low and high doses. Bacterial abundance rapidly decreased by 75% in the presence of AB, independently of their concentration, and remained constant until the end of the experiment. The bacterial community was mainly dominated by Aeromonas hydrophila and Brevundimonas intermedia while the other two strains, Micrococcus luteus and Rhodococcus sp. never exceed 10%. Interestingly, the bacterial strains, which were isolated at the end of the experiment, were not AB-resistant, while reassembled communities composed of the 4 strains, isolated from treatments under AB stress, significantly raised their performance (growth rate, abundance) in the presence of AB compared to the communities reassembled with strains isolated from the treatment without AB. By investigating the phenotypic adaptations of the communities subjected to the different treatments, we found that the presence of AB significantly increased co-aggregation by 5-6 fold. These results represent the first observation of co-aggregation as a successful strategy of AB resistance based on phenotype in aquatic bacterial communities, and can represent a fundamental step in the understanding of the effects of AB

  15. Diversity of Aquatic Insects in Keniam River, National Park, Pahang, Malaysia

    Directory of Open Access Journals (Sweden)

    Mohd Rasdi, Z.

    2012-09-01

    Full Text Available The study on biodiversity of aquatic insects was carried out covering the area of Kuala Keniam to Kuala Perkai River, National Park, Pahang, Malaysia. The macro invertebrate community was found in the different types of micro-habitat and various flowing speed levels in good quality of water of Keniam Rivers consisted mainly of aquatic insects. There are large numbers and wide species of aquatic insects in aquatic habitats make them of great ecological importance. There are three divided strata with total of nine sampling location were carried out within several varieties of microhabitats such as sandy, cobble, gravel, leaf and the pool area. The aquatic insects were collected and sampled by using a D-framed aquatic kick net. There was a wide variety of aquatic insects belonging to at least 8 orders in the study area. The orders of insect were Odonata, Coleoptera, Diptera, Trichoptera, Thysanura, Orthopthera, Hemiptera and Ephemeroptera. Throughout the study period, there is range from total of 140 to 604 individuals of aquatic insect trapped monthly and collected in Keniam River from September 2009 to December 2010. Some group of aquatic insects were found significant (χ2<0.05 different abundance between strata and sampling dates as well as habitat on the diversity of aquatic insects in Keniam River. The abundance and distribution of aquatic insects‟ species were varied and not constant from one month to another during the study period due to biotic and abiotic factors. Species diversity of aquatic insects varied in different strata of the Keniam River. This indicates the richness and diverse groups of aquatic insects in the study area. It adds to the fact that the undisturbed habitat quality is most suitable for insects to breed and multiply under the natural ecosystem with abundant food supply. Moving upstream from Kuala Perkai to lower stream to Kuala Keniam, one can observe various types of habitats for aquatic insects to live.

  16. Tool use by aquatic animals.

    Science.gov (United States)

    Mann, Janet; Patterson, Eric M

    2013-11-19

    Tool-use research has focused primarily on land-based animals, with less consideration given to aquatic animals and the environmental challenges and conditions they face. Here, we review aquatic tool use and examine the contributing ecological, physiological, cognitive and social factors. Tool use among aquatic animals is rare but taxonomically diverse, occurring in fish, cephalopods, mammals, crabs, urchins and possibly gastropods. While additional research is required, the scarcity of tool use can likely be attributable to the characteristics of aquatic habitats, which are generally not conducive to tool use. Nonetheless, studying tool use by aquatic animals provides insights into the conditions that promote and inhibit tool-use behaviour across biomes. Like land-based tool users, aquatic animals tend to find tools on the substrate and use tools during foraging. However, unlike on land, tool users in water often use other animals (and their products) and water itself as a tool. Among sea otters and dolphins, the two aquatic tool users studied in greatest detail, some individuals specialize in tool use, which is vertically socially transmitted possibly because of their long dependency periods. In all, the contrasts between aquatic- and land-based tool users enlighten our understanding of the adaptive value of tool-use behaviour. PMID:24101631

  17. Calidad físico-química y microbiólogica del agua en parques acuáticos Physicist-chemistry and Microbiological Water Quality in Aquatic Parks

    Directory of Open Access Journals (Sweden)

    Beatriz Helena Díaz-Solano

    2011-04-01

    establishments. As study zone was chosen the Morelos State, Mexico, which has four water parks. The study analyzed one of these parks, dividing the study as follow: Phase 1 Sampling of water in and out of the park, analyzing physicochemical and microbiological parameters; and Phase 2 Operational evaluation in six pools of water Park, assessing the electrical conductivity, Total Dissolved Solids (TDS, pH, color, turbidity and residual chlorine. The results were compared with Mexican Official Standards, determining whether there is deterioration in the quality of the resource in the operational processes of the parks. The Phase 1 gave as results raised levels in fats and oils (19.0 mg/L, color (100 UPt-Co, fecal coliforms (1.15 · 10(4 NMP/100 mL and total coliforms (1.70 · 10(5 NMP/100 mL. The Phase 2 showed high values of pH (7.9-8.4, diminishing the efficiency in disinfection and a behavior differentiated in conductivity and TDS in swimming pools filtering systems. Since conclusions there decided that the water quality in Water Parks must be controlled in parallel to the operability in swimming pools, the processes of chloration must be standardized. The users are responsible for the deterioration of water and require the generation of an Environmental Management System.

  18. Microfluidic Trap Arrays: Passive Sensors for Studying Aquatic Protozoan Ecology and Biogeography

    Science.gov (United States)

    Chau, J. F.; Bouchillon, G.; Shor, L. M.

    2012-12-01

    Microscopic organisms such as bacteria and protozoa are the engine that drives global biogeochemical processes: microbes fix carbon, produce oxygen, mediate nutrient cycling, and break down anthropogenic contaminants. In many habitats, the bacterial community structure and its net production is controlled in a top-down fashion by predation by protozoa. Despite their importance, many researchers have noted a significant gap in our understanding of their diversity, biogeography, and ecosystem function. We developed a microfluidic field sampling and analysis tool to study the biogeography and function of microbial eukaryotes. Microfluidic samplers were created to systematically target the morphology, function, and habitat of different microbial eukaryotes. Features such as channel dimensions, branching angles and radii of curvature were varied to allow organisms to be selected and captured based on cell size, shape, plasticity, and swimming or crawling modalities. We also developed genetic analysis protocols to extract and amplify DNA from a single trapped cell, allowing for molecular identification of trapped species. Results from freshwater sediment and water column deployments confirmed design efficiencies in trapping and concentrating protozoa based on biomass density, allowed for analysis of body plasticity and cell size, and also confirmed the viability of this technology for future real time monitoring of protozoa in aquatic ecosystems. This research offers a radical departure from existing approaches to study microbial eukaryotic communities in the field. Our novel methodology involving trapping, observation and recording of physical characteristics and genetic analysis of single cells allows comparison with bulk samples to place trapped microbes within a function- and habitat-specific context.

  19. Exposures from aquatic pathways

    International Nuclear Information System (INIS)

    Methods for estimation aquatic pathways contribution to the total population exposure are discussed. Aquatic pathways are the major factor for radionuclides spreading from the Chernobyl Exclusion zone. An annual outflow of 90Sr and 137Cs comprised 10-20 TBq and 2-4 TBq respectively and the population exposed by this effluence constitutes almost 30 million people. The dynamic of doses from 90Sr and 'Cs, which Dnieper water have to delivered, is calculated. The special software has been developed to simulate the process of dose formation in the of diverse Dnieper regions. Regional peculiarities of municipal tap, fishing and irrigation are considered. Seventy-year prediction of dose structure and function of dose forming is performed. The exposure is estimated for 12 regions of the Dnieper basin and the Crimea. The maximal individual annual committed effective doses due to the use of water by ordinary members of the population in Kiev region from 90Sr and 137Cs in 1986 are 1.7*10-5 Sv and 2.7*10-5 Sv respectively. A commercial fisherman on Kiev reservoir in 1986 received 4.7*10-4 Sv and 5*10-3 Sv from 90Sr and 137Cs, respectively. The contributions to the collective cumulative (over 70 years) committed effective dose (CCCED70) of irrigation, municipal tap water and fish consumption for members of the population respectively are 18%, 43%, 39% in Kiev region, 8%, 25%, 67% in Poltava region, and 50%, 50%, 0% (consumption of Dnieper fish is absent) in the Crimea. The predicted contribution of the Strontium-90 to CCCED70 resulting from the use of water is 80%. The CCCED70 to the population of the Dnieper regions (32.5 million people) is 3000 person-Sv due to the use the Dnieper water

  20. Aquatic insect populations in the MUDA rice agroecosystem

    International Nuclear Information System (INIS)

    Periodic sampling of aquatic insects was carried out in an experimental plot of the Muda rice agroecosystem. The study which was conducted from August to December 1995, investigated the impact of the pesticides Broadox and Trebon on aquatic insect populations during the rice growing period. The results indicated that there was no significant difference in abundance and diversity of aquatic insects between the treated and non-treated area. The four dominant aquatic insects were from the families; Chironomidae, Dysticidae, Corixidae and Belostomatidae. Water temperature and dissolved oxygen showed changes throughout the rice growing season and the values of these parameters decreased gradually towards the end of the rice growing season in January when the rice plants were maturing. (Author)

  1. Fate of organo-mineral particles in streams: Microbial degradation by streamwater & biofilm assemblages

    Science.gov (United States)

    Hunter, W. R.; Raich, M.; Wanek, W.; Battin, T. J.

    2013-12-01

    Inland waters are of global biogeochemical importance. They receive carbon inputs of ~ 4.8 Pg C/ y of which, 12 % is buried, 18 % transported to the oceans, and 70 % supports aquatic secondary production. However, the mechanisms that determine the fate of organic matter (OM) in these systems are poorly defined. One aspect of this is the formation of organo-mineral complexes in aquatic systems and their potential as a route for OM transport and burial vs. their use as carbon (C) and nitrogen (N) sources within aquatic systems. Organo-mineral particles form by sorption of dissolved OM to freshly eroded mineral surfaces and may contribute to ecosystem-scale particulate OM fluxes. We experimentally tested the availability of mineral-sorbed OM as a C & N source for streamwater microbial assemblages and streambed biofilms. Organo-mineral particles were constructed in vitro by sorption of 13C:15N-labelled amino acids to hydrated kaolin particles, and microbial degradation of these particles compared with equivalent doses of 13C:15N-labelled free amino acids. Experiments were conducted in 120 ml mesocosms over 7 days using biofilms and water sampled from the Oberer Seebach stream (Austria). Each incubation experienced a 16:8 light:dark regime, with metabolism monitored via changes in oxygen concentrations between photoperiods. The relative fate of the organo-mineral particles was quantified by tracing the mineralization of the 13C and 15N labels and their incorporation into microbial biomass. Here we present the initial results of 13C-label mineralization, incorporation and retention within dissolved organic carbon pool. The results indicate that 514 (× 219) μmol/ mmol of the 13:15N labeled free amino acids were mineralized over the 7-day incubations. By contrast, 186 (× 97) μmol/ mmol of the mineral-sorbed amino acids were mineralized over a similar period. Thus, organo-mineral complexation reduced amino acid mineralization by ~ 60 %, with no differences observed

  2. Assessing the effects of chemicals on aquatic microbial ecosystems

    NARCIS (Netherlands)

    Rocha Dimitrov, M.

    2016-01-01

    Nowadays, an increasing number of synthetic chemicals are used in a vast range of applications. When reflecting about our daily activities, it is not difficult to realize how much of our life style is dependent on synthetic chemicals. From the food we eat, medicines we take to the health care produc

  3. Assessing the effects of chemicals on aquatic microbial ecosystems

    OpenAIRE

    Rocha Dimitrov, M.

    2016-01-01

    Nowadays, an increasing number of synthetic chemicals are used in a vast range of applications. When reflecting about our daily activities, it is not difficult to realize how much of our life style is dependent on synthetic chemicals. From the food we eat, medicines we take to the health care products we use, all have their fair share of synthetic chemicals. However, many of the synthetic chemicals we depend on are released into the environment, where they could become a threat to non-target ...

  4. RhizoFlowCell system reveals early effects of micropollutants on aquatic plant rhizosphere.

    Science.gov (United States)

    Mynampati, Kalyan Chakravarthy; Lee, Yong Jian; Wijdeveld, Arjan; Reuben, Sheela; Samavedham, Lakshminarayanan; Kjelleberg, Staffan; Swarup, Sanjay

    2015-12-01

    In aquatic systems, one of the non-destructive ways to quantify toxicity of contaminants to plants is to monitor changes in root exudation patterns. In aquatic conditions, monitoring and quantifying such changes are currently challenging because of dilution of root exudates in water phase and lack of suitable instrumentation to measure them. Exposure to pollutants would not only change the plant exudation, but also affect the microbial communities that surround the root zone, thereby changing the metabolic profiles of the rhizosphere. This study aims at developing a device, the RhizoFlowCell, which can quantify metabolic response of plants, as well as changes in the microbial communities, to give an estimate of the stress to which the rhizosphere is exposed. The usefulness of RhizoFlowCell is demonstrated using naphthalene as a test pollutant. Results show that RhizoFlowCell system is useful in quantifying the dynamic metabolic response of aquatic rhizosphere to determine ecosystem health. PMID:26386206

  5. Importance of aquatic flora and fauna in determining water radioactivity

    International Nuclear Information System (INIS)

    Biogenic and related radionuclides occurring in surface waters owing to effluents from nuclear power plants, may be monitored by radiometry of aquatic organisms. The radioactivity accumulation factor in aquatic fauna and flora as against the water medium ranges between 102 and 106. The methods are described of sampling and processing aquatic organisms. The samples were studied biologically, microscopically and after incineration radiometrically. The activity was determined of alpha and beta radiation and a radiochemical separation of 90Sr and 137Cs was made in the highest level samples. The concentration factor was determined for 90Sr at 1:50 for the muscles and viscera of fish and at 1:500 for their scales. For 137Cs the concentration factor was 1:150 for muscles and viscera and 1:1000 for scales. (E.F.)

  6. Tunison Laboratory of Aquatic Science

    Data.gov (United States)

    Federal Laboratory Consortium — Tunison Laboratory of Aquatic Science (TLAS), located in Cortland, New York, is a field station of the USGS Great Lakes Science Center (GLSC). TLAS was established...

  7. Role Models in Aquatic Occupations.

    Science.gov (United States)

    Brown, Mabel C.

    1982-01-01

    Provided for each of 12 minority group role models in aquatic occupations are job responsibilities, educational requirements, comments on a typical day at the job, salary range, and recommendations for students wishing to enter the field described. (JN)

  8. Characterization of the microbial community in different types of Daqu samples as revealed by 16S rRNA and 26S rRNA gene clone libraries.

    Science.gov (United States)

    Zheng, Xiao-Wei; Yan, Zheng; Nout, M J Robert; Boekhout, Teun; Han, Bei-Zhong; Zwietering, Marcel H; Smid, Eddy J

    2015-01-01

    Daqu is a fermentative saccharification agent that is used to initiate fermentation in the production of Chinese liquor and vinegar. Different types of Daqu can be distinguished based on the maximum fermentation temperature, location of production, and raw materials used. We aimed to characterize and distinguish the different types of Daqu using a culture-independent cloning method. The lowest microbial diversity was found in Daqu produced at high-temperature. Principal component analysis (PCA) was used to compare the bacterial composition of Daqu from different regions (i.e., northern Daqu and southern Daqu). Staphylococcus gallinarum and Staphylococcus saprophyticus were found in southern Daqu, and were absent in northern Daqu. The fungi Saccharomycopsis fibuligera and Lichtheimia ramosa dominated in low/medium-temperature Daqu, whereas Thermomyces lanuginosus occurred in high-temperature Daqu. Our study identified potential biomarkers for the different types of Daqu, which can be useful for quality control and technology development of liquor or vinegar production. PMID:25395233

  9. Co-occurrence patterns in aquatic bacterial communities across changing permafrost landscapes

    Science.gov (United States)

    Comte, J.; Lovejoy, C.; Crevecoeur, S.; Vincent, W. F.

    2016-01-01

    Permafrost thaw ponds and lakes are widespread across the northern landscape and may play a central role in global biogeochemical cycles, yet knowledge about their microbial ecology is limited. We sampled a set of thaw ponds and lakes as well as shallow rock-basin lakes that are located in distinct valleys along a north-south permafrost degradation gradient. We applied high-throughput sequencing of the 16S rRNA gene to determine co-occurrence patterns among bacterial taxa (operational taxonomic units, OTUs), and then analyzed these results relative to environmental variables to identify variables controlling bacterial community structure. Network analysis was applied to identify possible ecological linkages among the bacterial taxa and with abiotic and biotic variables. The results showed an overall high level of shared taxa among bacterial communities within each valley; however, the bacterial co-occurrence patterns were non-random, with evidence of habitat preferences. There were taxonomic differences in bacterial assemblages among the different valleys that were statistically related to dissolved organic carbon concentration, conductivity and phytoplankton biomass. Co-occurrence networks revealed complex interdependencies within the bacterioplankton communities and showed contrasting linkages to environmental conditions among the main bacterial phyla. The thaw pond networks were composed of a limited number of highly connected taxa. This "small world network" property would render the communities more robust to environmental change but vulnerable to the loss of microbial "keystone species". These highly connected nodes (OTUs) in the network were not merely the numerically dominant taxa, and their loss would alter the organization of microbial consortia and ultimately the food web structure and functioning of these aquatic ecosystems.

  10. Measurements for modeling radionuclide transfer in the aquatic environment

    International Nuclear Information System (INIS)

    Analytical methods for measuring radionuclides in the aquatic environment are discussed for samples of fresh water and seawater, fish and shellfish, biota such as algae, plankton, seaweed, and aquatic plants, and sediment. Consideration is given to radionuclide collection and concentration, sample preservation, radiochemical and instrumental analysis, and quality assurance. Major problems are the very low environmental levels of the radionuclides of interest, simultaneous occurrence of radionuclides in several chemical and physical forms and the numerous factors that affect radionuclide levels in and transfers among media. Some radionuclides of importance in liquid effluents from nuclear power stations are listed, and sources of radiochemical analytical methods are recommended

  11. Comparison of microbial communities in Lake Tahoe surface sample with Tonga Trench water column samples using High Pressure Liquid Chromatography - Electrospray Ionization - Mass Spectroscopy (HPLC - ESI - MS) and Global Natural Products Social Molecular Network (GNPS)

    Science.gov (United States)

    Belmonte, M. A.

    2015-12-01

    Intact polar lipids (IPLs) are lipids composed of a head group, a glycerol, and a fatty acid chain that make up the lipid bilayer of cell membranes in living cells; and the varying head groups can be indicative of the type of microbes present in the environment (Van Mooy 2010). So by distinguishing and identifying the IPL distribution in an environment one can make inferences about the microbial communities in the said environment. In this study, we used High Pressure Liquid Chromatography-Electrospray Ionization- Mass Spectroscopy (HPLC-ESI-MS) and Global Natural Products Social Molecular Networking (GNPS) to compare the IPL distributions of two oligotrophic environments: surface waters of Lake Tahoe in the Sierra Nevada Mountains, and the water column of the Tonga Trench in the South Pacific. We hypothesized that the similar nutrient dynamics of the two oligotrophic environments would result in similar eukaryotic and prokaryotic communities, which would be reflected in the IPL composition of suspended particulate organic matter (POM). For simplicity we focused on the classes of IPLs most commonly observed in the marine environment: phosphotidylglycerol (PG), phosphotidylethanolamine (PE), diacylglyceryl-trimethyl-homoserine (DGTS), diacylglyceryl-hydroxymethyl-trimethylalanine (DGTA), sulfoquinovosyldiacylglycerol (SQDG), monoglycosyldiacylglycerol (MGDG) and diglycosyldiacylglycerol (DGDG). Our results showed that all of the marine IPLs of interest were present in Lake Tahoe which confirms that there are many of the same microbial communities in the fresh waters of Lake Tahoe and the salt waters Tonga Trench.

  12. Aquatic macrophyte community varies in urban reservoirs with different degrees of eutrophication

    Directory of Open Access Journals (Sweden)

    Suelen Cristina Alves da Silva

    2014-06-01

    Full Text Available AIM: Investigate spatial and temporal variation in the aquatic macrophyte community in four urban reservoirs located in Curitiba metropolitan region, Brazil. We tested the hypothesis that aquatic macrophyte community differ among reservoirs with different degrees of eutrophication. METHODS: The reservoirs selected ranged from oligotrophic/mesotrophic to eutrophic. Sampling occurred in October 2011, January 2012 and June 2012. Twelve aquatic macrophytes stands were sampled at each reservoir. Species were identified and the relative abundance of aquatic macrophytes was estimated. Differences among reservoirs and over sampling periods were analyzed: i through two‑way ANOVAs considering the stand extent (m and the stand biodiversity - species richness, evenness, Shannon-Wiener index and beta diversity (species variation along the aquatic macrophyte stand; and ii through PERMANOVA considering species composition. Indicator species that were characteristic for each reservoir were also identified. RESULTS: The aquatic macrophyte stand extent varied among reservoirs and over sampling periods. Species richness showed only temporal variation. On the other hand, evenness and Shannon-Wiener index varied only among reservoirs. The beta diversity of macrophyte stands did not vary among reservoirs or over time, meaning that species variability among aquatic macrophyte stands was independent of the stand extent and reservoir eutrophication. Community composition depended on the reservoir and sampling period. CONCLUSIONS: Our results support our initial expectation that reservoirs of different degrees of eutrophication have different aquatic macrophyte communities. As a consequence, each reservoir had particular indicator species. Therefore, monitoring and management efforts must be offered for each reservoir individually.

  13. Toxic metals in aquatic ecosystems: a microbiological perspective.

    Science.gov (United States)

    Ford, T; Ryan, D

    1995-02-01

    Microbe-metal interactions in aquatic environments and their exact role in transport and transformations of toxic metals are poorly understood. This paper will briefly review our understanding of these interactions. Ongoing research in Lake Chapala, Mexico, the major water source for the City of Guadalajara, provides an opportunity to study the microbiological aspects of metal-cycling in the water column. Constant resuspension of sediments provides a microbiologically rich aggregate-based system. Data indicate that toxic metals are concentrated on aggregate material and bioaccumulate in the food chain. A provisional model is presented for involvement of microbial aggregates in metal-cycling in Lake Chapala. PMID:7621793

  14. Decomposition of aquatic plants in lakes

    Energy Technology Data Exchange (ETDEWEB)

    Godshalk, G.L.

    1977-01-01

    This study was carried out to systematically determine the effects of temperature and oxygen concentration, two environmental parameters crucial to lake metabolism in general, on decomposition of five species of aquatic vascular plants of three growth forms in a Michigan lake. Samples of dried plant material were decomposed in flasks in the laboratory under three different oxygen regimes, aerobic-to-anaerobic, strict anaerobic, and aerated, each at 10/sup 0/C and 25/sup 0/C. In addition, in situ decomposition of the same species was monitored using the litter bag technique under four conditions.

  15. Improving aquatic warbler population assessments by accounting for imperfect detection.

    Directory of Open Access Journals (Sweden)

    Steffen Oppel

    Full Text Available Monitoring programs designed to assess changes in population size over time need to account for imperfect detection and provide estimates of precision around annual abundance estimates. Especially for species dependent on conservation management, robust monitoring is essential to evaluate the effectiveness of management. Many bird species of temperate grasslands depend on specific conservation management to maintain suitable breeding habitat. One such species is the Aquatic Warbler (Acrocephalus paludicola, which breeds in open fen mires in Central Europe. Aquatic Warbler populations have so far been assessed using a complete survey that aims to enumerate all singing males over a large area. Because this approach provides no estimate of precision and does not account for observation error, detecting moderate population changes is challenging. From 2011 to 2013 we trialled a new line transect sampling monitoring design in the Biebrza valley, Poland, to estimate abundance of singing male Aquatic Warblers. We surveyed Aquatic Warblers repeatedly along 50 randomly placed 1-km transects, and used binomial mixture models to estimate abundances per transect. The repeated line transect sampling required 150 observer days, and thus less effort than the traditional 'full count' approach (175 observer days. Aquatic Warbler abundance was highest at intermediate water levels, and detection probability varied between years and was influenced by vegetation height. A power analysis indicated that our line transect sampling design had a power of 68% to detect a 20% population change over 10 years, whereas raw count data had a 9% power to detect the same trend. Thus, by accounting for imperfect detection we increased the power to detect population changes. We recommend to adopt the repeated line transect sampling approach for monitoring Aquatic Warblers in Poland and in other important breeding areas to monitor changes in population size and the effects of

  16. Selective Nonroutine Microbial Surveillance of In-Use Hospital Nebulizers by Aerosol Entrapment and Direct Sampling Analyses of Solutions in Reservoirs

    OpenAIRE

    Reinhardt, Donald J.; Kennedy, Christopher; Malecka-Griggs, Blanche

    1980-01-01

    Effluent aerosols and liquid reservoir samples from 255 in-use hospital nebulization devices were analyzed by Aero-Test samplers (Olympic Corp.) and direct dilution procedures (0.1-, 0.01-, and 0.001-ml plated samples). Thirty-five percent (89 of 255) of the in-use hospital reservoir samples were positive by direct dilution, and 24% (61 of 255) were positive by Aero- Test samplers. Acinetobacter calcoaceticus var. anitratus was found either alone or in association with Pseudomonas spp. in 50%...

  17. Tritium in the aquatic environment

    International Nuclear Information System (INIS)

    Tritium is of environmental importance because it is released from nuclear facilities in relatively large quantities and because it has a half life of 12.26 y. Most of the tritium released into the atmosphere eventually reaches the aqueous environment, where it is rapidly taken up by aquatic organisms. This paper reviews the current literature on tritium in the aquatic environment. Conclusions from the review, which covered studies of algae, aquatic macrophytes, invertebrates, fish, and the food chain, were that aquatic organisms incorporate tritium into their tissue-free water very rapidly and reach concentrations near those of the external medium. The rate at which tritium from tritiated water is incorporated into the organic matter of cells is slower than the rate of its incorporation into the tissue-free water. If organisms consume tritiated food, incorporation of tritium into the organic matter is faster, and a higher tritium concentration is reached than when the organisms are exposed to only tritiated water alone. Incorporation of tritium bound to molecules into the organic matter depends on the chemical form of the ''carrier'' molecule. No evidence was found that biomagnification of tritium occurs at higher trophic levels. Radiation doses from tritium releases to large populations of humans will most likely come from the consumption of contaminated water rather than contaminated aquatic food products

  18. Tritium in the aquatic environment

    Energy Technology Data Exchange (ETDEWEB)

    Blaylock, B.G.; Hoffman, F.O.; Frank, M.L.

    1986-02-01

    Tritium is of environmental importance because it is released from nuclear facilities in relatively large quantities and because it has a half life of 12.26 y. Most of the tritium released into the atmosphere eventually reaches the aqueous environment, where it is rapidly taken up by aquatic organisms. This paper reviews the current literature on tritium in the aquatic environment. Conclusions from the review, which covered studies of algae, aquatic macrophytes, invertebrates, fish, and the food chain, were that aquatic organisms incorporate tritium into their tissue-free water very rapidly and reach concentrations near those of the external medium. The rate at which tritium from tritiated water is incorporated into the organic matter of cells is slower than the rate of its incorporation into the tissue-free water. If organisms consume tritiated food, incorporation of tritium into the organic matter is faster, and a higher tritium concentration is reached than when the organisms are exposed to only tritiated water alone. Incorporation of tritium bound to molecules into the organic matter depends on the chemical form of the ''carrier'' molecule. No evidence was found that biomagnification of tritium occurs at higher trophic levels. Radiation doses from tritium releases to large populations of humans will most likely come from the consumption of contaminated water rather than contaminated aquatic food products.

  19. Tritium in the aquatic environment

    International Nuclear Information System (INIS)

    Most of the tritium released from nuclear facilities into the atmosphere eventually reaches the aqueous environment where it is rapidly taken up by aquatic organisms. This paper reviews the current literature on tritium in the aquatic environment. Conclusions from the review, which covered algae, aquatic plants, invertebrates, fish, and food chain studies, were that aquatic organisms incorporate tritium into their tissue free water very rapidly and reach concentrations near that of the external medium. Incorporation of tritium from triated water into the organic matter of cells is at a slower rate than incorporation into the tissue free water. If organisms consume tritiated food, incorporation of tritium into the organic matter is faster and a higher tritium concentration is reached than when the organisms are exposed to only tritiated water. Incorporation of tritium bound to molecules into the organic matter depends on the chemical form of the 'carrier' molecule. No evidence was found that biomagnification of tritium occurs at higher tropic levels. Radiation doses to large populations of humans from tritium releases will most likely be from the consumption of contaminated water rather than contaminated aquatic food products. (author)

  20. Automated Microbial Metabolism Laboratory

    Science.gov (United States)

    1973-01-01

    Development of the automated microbial metabolism laboratory (AMML) concept is reported. The focus of effort of AMML was on the advanced labeled release experiment. Labeled substrates, inhibitors, and temperatures were investigated to establish a comparative biochemical profile. Profiles at three time intervals on soil and pure cultures of bacteria isolated from soil were prepared to establish a complete library. The development of a strategy for the return of a soil sample from Mars is also reported.

  1. Understanding Aquatic Rhizosphere Processes Through Metabolomics and Metagenomics Approach

    Science.gov (United States)

    Lee, Yong Jian; Mynampati, Kalyan; Drautz, Daniela; Arumugam, Krithika; Williams, Rohan; Schuster, Stephan; Kjelleberg, Staffan; Swarup, Sanjay

    2013-04-01

    The aquatic rhizosphere is a region around the roots of aquatic plants. Many studies focusing on terrestrial rhizosphere have led to a good understanding of the interactions between the roots, its exudates and its associated rhizobacteria. The rhizosphere of free-floating roots, however, is a different habitat that poses several additional challenges, including rapid diffusion rates of signals and nutrient molecules, which are further influenced by the hydrodynamic forces. These can lead to rapid diffusion and complicates the studying of diffusible factors from both plant and/or rhizobacterial origins. These plant systems are being increasingly used for self purification of water bodies to provide sustainable solution. A better understanding of these processes will help in improving their performance for ecological engineering of freshwater systems. The same principles can also be used to improve the yield of hydroponic cultures. Novel toolsets and approaches are needed to investigate the processes occurring in the aquatic rhizosphere. We are interested in understanding the interaction between root exudates and the complex microbial communities that are associated with the roots, using a systems biology approach involving metabolomics and metagenomics. With this aim, we have developed a RhizoFlowCell (RFC) system that provides a controlled study of aquatic plants, observed the root biofilms, collect root exudates and subject the rhizosphere system to changes in various chemical or physical perturbations. As proof of concept, we have used RFC to test the response of root exudation patterns of Pandanus amaryllifolius after exposure to the pollutant naphthalene. Complexity of root exudates in the aquatic rhizosphere was captured using this device and analysed using LC-qTOF-MS. The highly complex metabolomic profile allowed us to study the dynamics of the response of roots to varying levels of naphthalene. The metabolic profile changed within 5mins after spiking with

  2. Characterization of microbial communities in a pilot-scale constructed wetland using PLFA and PCR-DGGE analyses.

    Science.gov (United States)

    Jin, Guang; Kelley, Timothy R

    2007-09-01

    Phospholipid fatty acid (PLFA) analysis and 16S ribosomal DNA polymerase chain reaction amplification-denaturing gradient gel electrophoresis (PCR-DGGE) were used to determine microbial communities and predominant microbial populations in water samples collected from a pilot-scale constructed wetland system. This pilot-scale constructed wetland system consists of three types: subsurface-flow (SSF), surface-flow (SF) and a floating aquatic plant (FAP) system. Analysis of PLFA profiles indicated primarily eukaryotic organisms, including fungi, protozoa, and diatoms were observed in all three wetland systems. Biomarkers for Gram-negative bacteria were also detected in all samples analyzed while low proportions of biomarkers for Gram-positive bacteria were observed. Biomass content (total PFLA/sample) was highest in water samples collected from both SF and FAP system while highest metabolic activity was observed in FAP system. This is consistent with the observed highest metal removal rate in FAP system. Sequence analysis of the predominant PCR-DGGE DNA fragments showed 0.92 to 0.99 similarity indices to Beta-proteobacteria, Flavobacterium sp. GOBB3-206, Flexibacter-Cytophaga-Bacteroides group, and Gram-positive bacteria. Results suggest diverse microbial communities including microorganisms that may significantly contribute to biogeochemical elemental cycles. PMID:17849306

  3. Production in aquatic macrophyte communities

    DEFF Research Database (Denmark)

    Binzer, Thomas; Sand-Jensen, Kaj

    2002-01-01

    combined a simple mechanistic model and empirical measurements on artificially structured macroalgal communities (Ulva lactuca) with varying thallus absorptance and community density. Predicted and measured values corresponded closely and revealed that gross production in high-light environments...... that inefficient distribution of light can account for the low community production rates in aquatic habitats and the depth distribution of form-functional groups of macroalgae with different canopy structure.......-dimensional structure because of the strong drag and shear forces of moving water. This difference in canopy structure has been suggested to account for the three- to fivefold higher gross production rates in terrestrial than aquatic communities. To evaluate the effect of community structure in aquatic habitats, we...

  4. Measurement of undisturbed di-nitrogen emissions from aquatic ecosystems

    Science.gov (United States)

    Qin, Shuping, Clough, Timothy, Lou, Jiafa; Hu, Chunsheng; Oenema, Oene; Wrage-Mönnig, Nicole; Zhang, Yuming

    2016-04-01

    Increased production of reactive nitrogen (Nr) from atmospheric di-nitrogen (N2) during the last century has greatly contributed to increased food production1-4. However, enriching the biosphere with Nr through N fertilizer production, combustion, and biological N2 fixation has also caused a series of negative effects on global ecosystems 5,6, especially aquatic ecosystems7. The main pathway converting Nr back into the atmospheric N2 pool is the last step of the denitrification process, i.e., the reduction of nitrous oxide (N2O) into N2 by micro-organisms7,8. Despite several attempts9,10, there is not yet an accurate, fast and direct method for measuring undisturbed N2 fluxes from denitrification in aquatic sediments at the field scale11-14. Such a method is essential to study the feedback of aquatic ecosystems to Nr inputs1,2,7. Here we show that the measurement of both N2O emission and its isotope signature can be used to infer the undisturbed N2 fluxes from aquatic ecosystems. The microbial reduction of N2O increases the natural abundance of 15N-N2O relative to 14N-N2O (δ15N-N2O). We observed linear relationships between δ15N-N2O and the logarithmic transformed N2O/(N2+N2O) emission ratios. Through independent measurements, we verified that the undisturbed N2 flux from aquatic ecosystems can be inferred from measurements of N2O emissions and the δ15N-N2O signature. Our method allows the determination of field-scale N2 fluxes from undisturbed aquatic ecosystems, and thereby allows model predictions of denitrification rates to be tested. The undisturbed N2 fluxes observed are almost one order of magnitude higher than those estimated by the traditional method, where perturbation of the system occurs, indicating that the ability of aquatic ecosystems to remove Nr may have been severely underestimated.

  5. Global microbialization of coral reefs.

    Science.gov (United States)

    Haas, Andreas F; Fairoz, Mohamed F M; Kelly, Linda W; Nelson, Craig E; Dinsdale, Elizabeth A; Edwards, Robert A; Giles, Steve; Hatay, Mark; Hisakawa, Nao; Knowles, Ben; Lim, Yan Wei; Maughan, Heather; Pantos, Olga; Roach, Ty N F; Sanchez, Savannah E; Silveira, Cynthia B; Sandin, Stuart; Smith, Jennifer E; Rohwer, Forest

    2016-01-01

    Microbialization refers to the observed shift in ecosystem trophic structure towards higher microbial biomass and energy use. On coral reefs, the proximal causes of microbialization are overfishing and eutrophication, both of which facilitate enhanced growth of fleshy algae, conferring a competitive advantage over calcifying corals and coralline algae. The proposed mechanism for this competitive advantage is the DDAM positive feedback loop (dissolved organic carbon (DOC), disease, algae, microorganism), where DOC released by ungrazed fleshy algae supports copiotrophic, potentially pathogenic bacterial communities, ultimately harming corals and maintaining algal competitive dominance. Using an unprecedented data set of >400 samples from 60 coral reef sites, we show that the central DDAM predictions are consistent across three ocean basins. Reef algal cover is positively correlated with lower concentrations of DOC and higher microbial abundances. On turf and fleshy macroalgal-rich reefs, higher relative abundances of copiotrophic microbial taxa were identified. These microbial communities shift their metabolic potential for carbohydrate degradation from the more energy efficient Embden-Meyerhof-Parnas pathway on coral-dominated reefs to the less efficient Entner-Doudoroff and pentose phosphate pathways on algal-dominated reefs. This 'yield-to-power' switch by microorganism directly threatens reefs via increased hypoxia and greater CO2 release from the microbial respiration of DOC. PMID:27572833

  6. Water hyacinth : the suitable aquatic weed for radioactive nuclide absorption in water

    International Nuclear Information System (INIS)

    The experiment was set up to determine the quantities of radioactive nuclides which were absorbed by aquatic weeds in Khon Kaen Province. The best aquatic weed would be used to be sampled for study of radioactive nuclide quantities in natural water resources. Seven kinds of aquatic weeds in the same site were corrected and pretreated by ovening to be ash at 450 οC. Gamma-ray spectra of the samples were detected and analyzed for comparing the quantities of radioactive nuclides. Gamma-ray spectrometry with a HPGe detector was set up to detect radioactive nuclides and their quantities in ashes of aquatic weeds. According to this study, water hyacinth, from seven aquatic weeds, had the most quantities of radioactive nuclides. The water hyacinth with 30 cm leaves in length can absorb the most quantities of radioactive nuclides

  7. Urban microbial ecology of a freshwater estuary of Lake Michigan

    Directory of Open Access Journals (Sweden)

    Jenny C. Fisher

    2015-07-01

    Full Text Available Abstract Freshwater estuaries throughout the Great Lakes region receive stormwater runoff and riverine inputs from heavily urbanized population centers. While human and animal feces contained in this runoff are often the focus of source tracking investigations, non-fecal bacterial loads from soil, aerosols, urban infrastructure, and other sources are also transported to estuaries and lakes. We quantified and characterized this non-fecal urban microbial component using bacterial 16S rRNA gene sequences from sewage, stormwater, rivers, harbor/estuary, and the lake surrounding Milwaukee, WI, USA. Bacterial communities from each of these environments had a distinctive composition, but some community members were shared among environments. We used a statistical biomarker discovery tool to identify the components of the microbial community that were most strongly associated with stormwater and sewage to describe an “urban microbial signature,” and measured the presence and relative abundance of these organisms in the rivers, estuary, and lake. This urban signature increased in magnitude in the estuary and harbor with increasing rainfall levels, and was more apparent in lake samples with closest proximity to the Milwaukee estuary. The dominant bacterial taxa in the urban signature were Acinetobacter, Aeromonas, and Pseudomonas, which are organisms associated with pipe infrastructure and soil and not typically found in pelagic freshwater environments. These taxa were highly abundant in stormwater and sewage, but sewage also contained a high abundance of Arcobacter and Trichococcus that appeared in lower abundance in stormwater outfalls and in trace amounts in aquatic environments. Urban signature organisms comprised 1.7% of estuary and harbor communities under baseflow conditions, 3.5% after rain, and >10% after a combined sewer overflow. With predicted increases in urbanization across the Great Lakes, further alteration of freshwater communities is

  8. Protozoa interaction with aquatic invertebrate: interest for watercourses biomonitoring.

    Science.gov (United States)

    Palos Ladeiro, M; Bigot, A; Aubert, D; Hohweyer, J; Favennec, L; Villena, I; Geffard, A

    2013-02-01

    Toxoplasma gondii, Cryptosporidium parvum, and Giardia duodenalis are human waterborne protozoa. These worldwide parasites had been detected in various watercourses as recreational, surface, drinking, river, and seawater. As of today, water protozoa detection was based on large water filtration and on sample concentration. Another tool like aquatic invertebrate parasitism could be used for sanitary and environmental biomonitoring. In fact, organisms like filter feeders could already filtrate and concentrate protozoa directly in their tissues in proportion to ambient concentration. So molluscan shellfish can be used as a bioindicator of protozoa contamination level in a site since they were sedentary. Nevertheless, only a few researches had focused on nonspecific parasitism like protozoa infection on aquatic invertebrates. Objectives of this review are twofold: Firstly, an overview of protozoa in worldwide water was presented. Secondly, current knowledge of protozoa parasitism on aquatic invertebrates was detailed and the lack of data of their biological impact was pointed out. PMID:23001759

  9. Abstracts of the 34. aquatic toxicity workshop : navigating new waters

    International Nuclear Information System (INIS)

    This workshop provided an opportunity to discuss current research findings in the field of aquatic toxicology and the biological effect on biota. It addressed the challenges of assessing and protecting the health of aquatic ecosystems in Canada. Topics of discussion ranged from basic aquatic toxicology to applications in environmental monitoring, setting regulations and developing criteria for sediment and water quality. The sessions were entitled: acid rain; agricultural stressors; amphibian ecotoxicology; aquaculture; aquatic ecotoxicology and human health; biological test methods development and their application; effects based pesticides research; emerging technologies for tracing contaminants; endocrine disruption; environmental/climate change in aquatic toxicology; environmental effects monitoring; environmental impacts of mercury; environmental risk assessment; Gulfs of Maine and St. Lawrence/Bay of Fundy issues; Maritimes leaders in marine ecotoxicology and prevention; metal and diamond mining; microscale ecotoxicology; multiple stressors in estuaries; municipal wastewaters and water treatment; non-lethal sampling; oil and gas development and production; parasites as indicators of contamination; persistent contaminants; sediment/soil toxicology; selenium ecotoxicology; and, stable isotopes in ecotoxicology. This book featured 162 abstracts, of which 19 have been catalogued separately for inclusion in this database

  10. Efficacy of trap modifications for increasing capture rates of aquatic snakes in floating aquatic funnel traps

    Science.gov (United States)

    Halstead, Brian J.; Wylie, Glenn D.; Casazza, Michael L.

    2013-01-01

    Increasing detection and capture probabilities of rare or elusive herpetofauna of conservation concern is important to inform the scientific basis for their management and recovery. The Giant Gartersnake (Thamnophis gigas) is an example of a secretive, wary, and generally difficult-to-sample species about which little is known regarding its patterns of occurrence and demography. We therefore evaluated modifications to existing traps to increase the detection and capture probabilities of the Giant Gartersnake to improve the precision with which occurrence, abundance, survival, and other demographic parameters are estimated. We found that adding a one-way valve constructed of cable ties to the small funnel opening of traps and adding hardware cloth extensions to the wide end of funnels increased capture rates of the Giant Gartersnake by 5.55 times (95% credible interval = 2.45–10.51) relative to unmodified traps. The effectiveness of these modifications was insensitive to the aquatic habitat type in which they were deployed. The snout-vent length of the smallest and largest captured snakes did not vary among trap modifications. These trap modifications are expected to increase detection and capture probabilities of the Giant Gartersnake, and show promise for increasing the precision with which demographic parameters can be estimated for this species. We anticipate that the trap modifications found effective in this study will be applicable to a variety of aquatic and semi-aquatic reptiles and amphibians and improve conservation efforts for these species.

  11. Biochemical Analysis of Microbial Rhodopsins.

    Science.gov (United States)

    Maresca, Julia A; Keffer, Jessica L; Miller, Kelsey J

    2016-01-01

    Ion-pumping rhodopsins transfer ions across the microbial cell membrane in a light-dependent fashion. As the rate of biochemical characterization of microbial rhodopsins begins to catch up to the rate of microbial rhodopsin identification in environmental and genomic sequence data sets, in vitro analysis of their light-absorbing properties and in vivo analysis of ion pumping will remain critical to characterizing these proteins. As we learn more about the variety of physiological roles performed by microbial rhodopsins in different cell types and environments, observing the localization patterns of the rhodopsins and/or quantifying the number of rhodopsin-bearing cells in natural environments will become more important. Here, we provide protocols for purification of rhodopsin-containing membranes, detection of ion pumping, and observation of functional rhodopsins in laboratory and environmental samples using total internal reflection fluorescence microscopy. © 2016 by John Wiley & Sons, Inc. PMID:27153387

  12. Microbial diversity in fecal samples depends on DNA extraction method: easyMag DNA extraction compared to QIAamp DNA stool mini kit extraction

    OpenAIRE

    Mirsepasi, Hengameh; Persson, Søren; Struve, Carsten; Andersen, Lee O B; Petersen, Andreas M.; Krogfelt, Karen A.

    2014-01-01

    Background There are challenges, when extracting bacterial DNA from specimens for molecular diagnostics, since fecal samples also contain DNA from human cells and many different substances derived from food, cell residues and medication that can inhibit downstream PCR. The purpose of the study was to evaluate two different DNA extraction methods in order to choose the most efficient method for studying intestinal bacterial diversity using Denaturing Gradient Gel Electrophoresis (DGGE). Findin...

  13. Aquatic Plants and Lake Ecosystems

    Czech Academy of Sciences Publication Activity Database

    Pokorný, Jan; Květ, Jan

    Oxford : Blackwell Science Ltd, 2003 - (O´Sullivan, P.; Reynolds, C.), s. 309-340 ISBN 0-632-04797-6 R&D Projects: GA ČR GA206/01/1113 Institutional research plan: CEZ:AV0Z6087904 Keywords : Aquatic macrophytes * green algae Subject RIV: EH - Ecology, Behaviour

  14. Macrophytes: Ecology of aquatic plants

    NARCIS (Netherlands)

    Bornette, G.; Puijalon, S.

    2009-01-01

    Aquatic plants contribute to maintaining key functions and related biodiversity in freshwater ecosystems, and to provide the needs of human societies. The way the ecological niches of macrophytes are determined by abiotic filters and biotic ones is considered. A simple, broadly applicable model of t

  15. Aquatic Macrophyte Risk Assessment for Pesticides

    NARCIS (Netherlands)

    Maltby, L.; Arnold, D.; Arts, G.H.P.; Davies, J.; Heimbach, F.; Pickl, C.; Poulsen, V.

    2009-01-01

    Given the essential role that primary producers play in aquatic ecosystems, it is imperative that the potential risk of pesticides to the structure and functioning of aquatic plants is adequately assessed. This book discusses the assessment of the risk of pesticides with herbicidal activity to aquat

  16. Standard filtration practices may significantly distort planktonic microbial diversity estimates

    Directory of Open Access Journals (Sweden)

    Cory Cruz Padilla

    2015-06-01

    Full Text Available Fractionation of biomass by filtration is a standard method for sampling planktonic microbes. It is unclear how the taxonomic composition of filtered biomass changes depending on sample volume. Using seawater from a marine oxygen minimum zone, we quantified the 16S rRNA gene composition of biomass on a prefilter (1.6 μm pore-size and a downstream 0.2 μm filter over sample volumes from 0.05 to 5 L. Significant community shifts occurred in both filter fractions, and were most dramatic in the prefilter community. Sequences matching Vibrionales decreased from ~40-60% of prefilter datasets at low volumes (0.05-0.5 L to less than 5% at higher volumes, while groups such at the Chromatiales and Thiohalorhabdales followed opposite trends, increasing from minor representation to become the dominant taxa at higher volumes. Groups often associated with marine particles, including members of the Deltaproteobacteria, Planctomycetes and Bacteroidetes, were among those showing the greatest increase with volume (4 to 27-fold. Taxon richness (97% similarity clusters also varied significantly with volume, and in opposing directions depending on filter fraction, highlighting potential biases in community complexity estimates. These data raise concerns for studies using filter fractionation for quantitative comparisons of aquatic microbial diversity, for example between free-living and particle-associated communities.

  17. Fate of polychlorinated biphenyls in a contaminated lake ecosystem: Combining equilibrium passive sampling of sediment and water with total concentration measurements of biota:Chemical equilibrium status of an aquatic ecosystem

    OpenAIRE

    Mäenpää, Kimmo; Leppänen, Matti T.; Figueiredo, Kaisa; Mayer, Philipp; Gilbert, Dorothea; Jahnke, Annika; Gil-Allué, Carmen; Akkanen, Jarkko; Nybom, Inna; Herve, Sirpa

    2015-01-01

    Equilibrium sampling devices can be applied to study and monitor the exposure and fate of hydrophobic organic chemicals on a thermodynamic basis. They can be used to determine freely dissolved concentrations and chemical activity ratios and to predict equilibrium partitioning concentrations of hydrophobic organic chemicals in biota lipids. The authors' aim was to assess the equilibrium status of polychlorinated biphenyls (PCBs) in a contaminated lake ecosystem and along its discharge course u...

  18. Photochemical characterization of water samples from Minnesota and Vermont sites with malformed frogs: potential influence of photosensitization by singlet molecular oxygen (1O2) and free radicals on aquatic toxicity

    International Nuclear Information System (INIS)

    Environmental pollutants activated by UV sunlight may have contributed to the recent decline in frog populations and the concomitant increase in malformations in the USA and abroad. UV radiation is able to mutate DNA and to initiate photosensitization processes that generate mutagenic and biologically disruptive oxygen transients. We have examined water from selected sites in Minnesota and Vermont using singlet molecular oxygen (1O2), detected by its phosphorescence and free radicals detected by spin trapping, as markers for photosensitization. Water from a pond in Minnesota with malformed frogs, which also causes malformations in the laboratory, photosensitized more 1O2, even though it absorbed less UV light compared to water from a site that did not cause malformations. This suggested that unknown natural or pollutant agents were present, and that photosensitization may be involved. Although UV irradiation of the two Minnesota water samples in the presence of the spin trap 5,5-dimethyl-1-pyrroline N-oxide (DMPO) revealed the presence of the DMPO/·OH, DMPO/·H(eaq-) and DMPO/·C(unknown) adducts there were no qualitative or quantitative differences between them. We also examined water samples from several sites in Vermont, and compared them by measuring the quantum yield of 1O2 photosensitization. While all the Vermont samples produced a small amount of 1O2, there was no clear correlation with the incidence of frog malformations. However, the samples differed strongly in absorption spectra and the ability to quench 1O2. These factors may determine how much UV light is absorbed and converted into chemical reactions. Our results show that photochemical characterization of 1O2 photosensitization is possible in untreated natural water samples. Photosensitization falls into the category of global factors that may be closely associated with the effects of UV irradiation of the Earth's environments. Thus, photosensitization might be an important component in global

  19. Microbial effects

    International Nuclear Information System (INIS)

    The long term safety and integrity of radioactive waste disposal sites proposed for use by Ontario Hydro may be affected by the release of radioactive gases. Microbes mediate the primary pathways of waste degradation and hence an assessment of their potential to produce gaseous end products from the breakdown of low level waste was performed. Due to a number of unknown variables, assumptions were made regarding environmental and waste conditions that controlled microbial activity; however, it was concluded that 14C and 3H would be produced, albeit over a long time scale of about 1500 years for 14C in the worst case situation

  20. Microbial biotechnology.

    Science.gov (United States)

    Demain, A L

    2000-01-01

    For thousands of years, microorganisms have been used to supply products such as bread, beer and wine. A second phase of traditional microbial biotechnology began during World War I and resulted in the development of the acetone-butanol and glycerol fermentations, followed by processes yielding, for example, citric acid, vitamins and antibiotics. In the early 1970s, traditional industrial microbiology was merged with molecular biology to yield more than 40 biopharmaceutical products, such as erythropoietin, human growth hormone and interferons. Today, microbiology is a major participant in global industry, especially in the pharmaceutical, food and chemical industries. PMID:10631778

  1. Microbial Ecosystems, Protection of

    NARCIS (Netherlands)

    Bodelier, P.L.E.; Nelson, K.E.

    2014-01-01

    Synonyms Conservation of microbial diversity and ecosystem functions provided by microbes; Preservation of microbial diversity and ecosystem functions provided by microbes Definition The use, management, and conservation of ecosystems in order to preserve microbial diversity and functioning. Introdu

  2. Human Streptococcus agalactiae strains in aquatic mammals and fish

    Directory of Open Access Journals (Sweden)

    Delannoy Christian MJ

    2013-02-01

    Full Text Available Abstract Background In humans, Streptococcus agalactiae or group B streptococcus (GBS is a frequent coloniser of the rectovaginal tract, a major cause of neonatal infectious disease and an emerging cause of disease in non-pregnant adults. In addition, Streptococcus agalactiae causes invasive disease in fish, compromising food security and posing a zoonotic hazard. We studied the molecular epidemiology of S. agalactiae in fish and other aquatic species to assess potential for pathogen transmission between aquatic species and humans. Methods Isolates from fish (n = 26, seals (n = 6, a dolphin and a frog were characterized by pulsed-field gel electrophoresis, multilocus sequence typing and standardized 3-set genotyping, i.e. molecular serotyping and profiling of surface protein genes and mobile genetic elements. Results Four subpopulations of S. agalactiae were identified among aquatic isolates. Sequence type (ST 283 serotype III-4 and its novel single locus variant ST491 were detected in fish from Southeast Asia and shared a 3-set genotype identical to that of an emerging ST283 clone associated with invasive disease of adult humans in Asia. The human pathogenic strain ST7 serotype Ia was also detected in fish from Asia. ST23 serotype Ia, a subpopulation that is normally associated with human carriage, was found in all grey seals, suggesting that human effluent may contribute to microbial pollution of surface water and exposure of sea mammals to human pathogens. The final subpopulation consisted of non-haemolytic ST260 and ST261 serotype Ib isolates, which belong to a fish-associated clonal complex that has never been reported from humans. Conclusions The apparent association of the four subpopulations of S. agalactiae with specific groups of host species suggests that some strains of aquatic S. agalactiae may present a zoonotic or anthroponotic hazard. Furthermore, it provides a rational framework for exploration of pathogenesis and host

  3. The ocean sampling day consortium

    OpenAIRE

    Kopf, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra, Antonio; Jeanthon, Christian; Rahav, Eyal; Ullrich, Matthias; Wichels, Antje; Gerdts, Gunnar; Polymenakou, Paraskevi; Kotoulas, Giorgos; Siam, Rania

    2015-01-01

    Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks...

  4. The ocean sampling day consortium

    OpenAIRE

    Kopf, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra, Antonio; Jeanthon, Christian; Rahav, Eyal; Ullrich, Matthias; Wichels, Antje; Gerdts, Gunnar; Polymenakou, Paraskevi; Kotoulas, Giorgos; Siam, Rania

    2015-01-01

    Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks betwe...

  5. The ocean sampling day consortium

    OpenAIRE

    Kopf, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra, Antonio; Jeanthon, Christian; Rahav, Eyal; Ullrich, Matthias; Wichels, Antje; Gerdts, Gunnar; Polymenakou, Paraskevi; Kotoulas, Giorgos; Siam, Rania

    2015-01-01

    Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and ne...

  6. Assessment of potential aquatic herbicide impacts to California aquatic ecosystems.

    Science.gov (United States)

    Siemering, Geoffrey S; Hayworth, Jennifer D; Greenfield, Ben K

    2008-10-01

    A series of legal decisions culminated in 2002 with the California State Water Resources Control Board funding the San Francisco Estuary Institute to develop and implement a 3-year monitoring program to determine the potential environmental impacts of aquatic herbicide applications. The monitoring program was intended to investigate the behavior of all aquatic pesticides in use in California, to determine potential impacts in a wide range of water-body types receiving applications, and to help regulators determine where to direct future resources. A tiered monitoring approach was developed to achieve a balance between program goals and what was practically achievable within the project time and budget constraints. Water, sediment, and biota were collected under "worst-case" scenarios in close association with herbicide applications. Applications of acrolein, copper sulfate, chelated copper, diquat dibromide, glyphosate, fluridone, triclopyr, and 2,4-D were monitored. A range of chemical analyses, toxicity tests, and bioassessments were conducted. At each site, risk quotients were calculated to determine potential impacts. For sediment-partitioning herbicides, sediment quality triad analysis was performed. Worst-case scenario monitoring and special studies showed limited short-term and no long-term toxicity directly attributable to aquatic herbicide applications. Risk quotient calculations called for additional risk characterizations; these included limited assessments for glyphosate and fluridone and more extensive risk assessments for diquat dibromide, chelated copper products, and copper sulfate. Use of surfactants in conjunction with aquatic herbicides was positively associated with greater ecosystem impacts. Results therefore warrant full risk characterization for all adjuvant compounds. PMID:18293029

  7. Preparation, characterization, and applications of a novel solid-phase microextraction fiber by sol-gel technology on the surface of stainless steel wire for determination of poly cyclic aromatic hydrocarbons in aquatic environmental samples

    Energy Technology Data Exchange (ETDEWEB)

    Es-haghi, Ali, E-mail: a.eshaghi@rvsri.ac.ir [Department of Physico Chemistry, Razi Vaccine and Serum Research Institute, PO Box 31975/148, Karaj (Iran, Islamic Republic of); Hosseininasab, Valiallah; Bagheri, Habib [Environmental and Bio-Analytical Laboratories, Department of Chemistry, Sharif University of Technology, PO Box 11365-9516, Tehran (Iran, Islamic Republic of)

    2014-02-01

    Highlights: • A novel solid-phase microextraction (SPME) fiber was prepared using sol–gel technology. • Sol–gel coating was performed on stainless steel substrate. • The new fibers are robust and unbreakable with temperature stability. • The fibers were used for extraction of PAHs from aqueous samples. Abstract: A novel solid-phase microextraction(SPME) fiber was prepared using sol–gel technology with ethoxylated nonylphenol as a fiber coating material. The fiber was employed to develop a headspace SPME–GC–MS method suitable for quantification of 13 polycyclic aromatic hydrocarbons (PAHs) in water samples. Surface characteristics of the fibers were inspected by energy dispersive X-ray (EDX) spectroscopy as well as by scanning electron microscopy (SEM). The SEM measurements showed the presence of highly porous nano-sized particles in the coating. Important parameters affecting the extraction efficiency such as extraction temperature and time, desorption conditions as well as ionic strength have been evaluated and optimized. In the next step, the validation of the new method have been performed, finding it to be specific in the trace analysis of PAHs, with the limit of detection (LOD) ranging from 0.01 to 0.5 μg L⁻¹ and the linear range from the respective LOD to 200 μg L⁻¹with RSD amounting to less than 8%. The thermal stability of the fibers was investigated as well and they were found to be durable at 280 °C for 345 min. Furthermore, the proposed method was successfully applied for quantification of PAHs in real water samples.

  8. Preparation, characterization, and applications of a novel solid-phase microextraction fiber by sol-gel technology on the surface of stainless steel wire for determination of poly cyclic aromatic hydrocarbons in aquatic environmental samples

    International Nuclear Information System (INIS)

    Graphical abstract: - Highlights: • A novel solid-phase microextraction (SPME) fiber was prepared using sol–gel technology. • Sol–gel coating was performed on stainless steel substrate. • The new fibers are robust and unbreakable with temperature stability. • The fibers were used for extraction of PAHs from aqueous samples. - Abstract: A novel solid-phase microextraction(SPME) fiber was prepared using sol–gel technology with ethoxylated nonylphenol as a fiber coating material. The fiber was employed to develop a headspace SPME–GC–MS method suitable for quantification of 13 polycyclic aromatic hydrocarbons (PAHs) in water samples. Surface characteristics of the fibers were inspected by energy dispersive X-ray (EDX) spectroscopy as well as by scanning electron microscopy (SEM). The SEM measurements showed the presence of highly porous nano-sized particles in the coating. Important parameters affecting the extraction efficiency such as extraction temperature and time, desorption conditions as well as ionic strength have been evaluated and optimized. In the next step, the validation of the new method have been performed, finding it to be specific in the trace analysis of PAHs, with the limit of detection (LOD) ranging from 0.01 to 0.5 μg L−1 and the linear range from the respective LOD to 200 μg L−1with RSD amounting to less than 8%. The thermal stability of the fibers was investigated as well and they were found to be durable at 280 °C for 345 min. Furthermore, the proposed method was successfully applied for quantification of PAHs in real water samples

  9. Proposed Release Guides to Protect Aquatic Biota

    Energy Technology Data Exchange (ETDEWEB)

    Marter, W.L.

    2001-03-28

    At the request of South Carolina Department of Health and Environmental Control (SCDHEC) and the Department of Energy (DOE), the Savannah River Laboratory was assigned the task of developing the release guides to protect aquatic biota. A review of aquatic radioecology literature by two leading experts in the field of radioecology concludes that exposure of aquatic biota at one rad per day or less will not produce detectable deleterious effects on aquatic organisms. On the basis of this report, DOE recommends the use of one rad per day as an interim dose standard to protect aquatic biota.

  10. Preliminary studies on aquatic Oligochaeta in and around Chennai, Tamil Nadu, India

    OpenAIRE

    NAVEED, Mohammed Ibrahim

    2012-01-01

    Aquatic oligochaetes were studied in 2 lowland regions (the Chennai and Tiruvallur districts) and a mountainous area (Ooty) in Tamil Nadu, southern India. Quantitative core samples, 2.5 cm in diameter, were collected monthly from April 2005 to March 2006 in Kodungaiyur Swamp and Pandinellur Swamp, the 2 main sites commercially exploited for aquatic Oligochaeta in Chennai. Random qualitative samples were collected from other sites using corers or strainers. In total, 9 naidids and 4 tubificids...

  11. Aquatic plant control research

    Energy Technology Data Exchange (ETDEWEB)

    Pryfogle, P.A.; Rinehart, B.N. [Idaho National Engineering Lab., Idaho Falls, ID (United States); Ghio, E.G. [Pacific Gas & Electric Company, San Francisco, CA (United States). Hydro Generation Engineering

    1997-05-01

    The Northwest region of the United States contains extensive canal systems that transport water for hydropower generation. Nuisance plants, including algae, that grow in these systems reduce their hydraulic capacity through water displacement and increased surface friction. Most control methods are applied in an ad hoc fashion. The goal of this work is to develop cost-effective, environmentally sound, long-term management strategies to prevent and control nuisance algal growth. This paper reports on a multi-year study, performed in collaboration with the Pacific Gas & Electric Company, to investigate algal growth in their canal systems, and to evaluate various control methodologies. Three types of controls, including mechanical, biological and chemical treatment, were selected for testing and evaluation. As part of this study, water quality data were collected and algal communities were sampled from numerous stations throughout the distribution system at regular intervals. This study resulted in a more comprehensive understanding of conditions leading to the development of nuisance algal growth, a better informed selection of treatment plans, and improved evaluation of the effectiveness for the control strategies selected for testing.

  12. Microbial biodiversity of the atmosphere

    Science.gov (United States)

    Klein, Ann Maureen

    Microorganisms are critical to the functioning of terrestrial and aquatic ecosystems and may also play a role in the functioning of the atmosphere. However, little is known about the diversity and function of microorganisms in the atmosphere. To investigate the forces driving the assembly of bacterial microbial communities in the atmosphere, I measured temporal variation in bacterial diversity and composition over diurnal and inter-day time scales. Results suggest that bacterial communities in the atmosphere markedly vary over diurnal time scales and are likely structured by inputs from both local terrestrial and long-distance sources. To assess the potential functions of bacteria and fungi in the atmosphere, I characterized total and potentially active communities using both RNA- and DNA-based data. Results suggest there are metabolically active microorganisms in the atmosphere that may affect atmospheric functions including precipitation development and carbon cycling. This dissertation includes previously published and unpublished co-authored material.

  13. The Occurrence of Bioactive Micromonosporae in Aquatic Habitats of the Sunshine Coast in Australia

    Directory of Open Access Journals (Sweden)

    D. Ipek Kurtböke

    2008-06-01

    Full Text Available Screening strategies based on the ecological knowledge of antibiotic producing microorganisms and their roles in the natural environment are being increasingly employed in the search for novel antibiotic agents. Micromonosporae are common inhabitants of aquatic habitats and have proved to be a continuing source of novel bioactive compounds including antibacterial and antitumor agents. The ecological distribution and frequency of bioactive micromonosporae in Sunshine Coast region aquatic habitats were studied through a range of selective isolation procedures designed to negatively select against the isolation of unwanted microbial taxa commonly associated with marine environments. It was revealed that bioactive compound producing species of micromonosporae were present in the aquatic habitats of the Sunshine Coast region in Australia.

  14. Differentiating aquatic plant communities in a eutrophic river using hyperspectral and multispectral remote sensing

    Science.gov (United States)

    Tian, Y.Q.; Yu, Q.; Zimmerman, M.J.; Flint, S.; Waldron, M.C.

    2010-01-01

    This study evaluates the efficacy of remote sensing technology to monitor species composition, areal extent and density of aquatic plants (macrophytes and filamentous algae) in impoundments where their presence may violate water-quality standards. Multispectral satellite (IKONOS) images and more than 500 in situ hyperspectral samples were acquired to map aquatic plant distributions. By analyzing field measurements, we created a library of hyperspectral signatures for a variety of aquatic plant species, associations and densities. We also used three vegetation indices. Normalized Difference Vegetation Index (NDVI), near-infrared (NIR)-Green Angle Index (NGAI) and normalized water absorption depth (DH), at wavelengths 554, 680, 820 and 977 nm to differentiate among aquatic plant species composition, areal density and thickness in cases where hyperspectral analysis yielded potentially ambiguous interpretations. We compared the NDVI derived from IKONOS imagery with the in situ, hyperspectral-derived NDVI. The IKONOS-based images were also compared to data obtained through routine visual observations. Our results confirmed that aquatic species composition alters spectral signatures and affects the accuracy of remote sensing of aquatic plant density. The results also demonstrated that the NGAI has apparent advantages in estimating density over the NDVI and the DH. In the feature space of the three indices, 3D scatter plot analysis revealed that hyperspectral data can differentiate several aquatic plant associations. High-resolution multispectral imagery provided useful information to distinguish among biophysical aquatic plant characteristics. Classification analysis indicated that using satellite imagery to assess Lemna coverage yielded an overall agreement of 79% with visual observations and >90% agreement for the densest aquatic plant coverages. Interpretation of biophysical parameters derived from high-resolution satellite or airborne imagery should prove to be a

  15. Pre-natal Aquatic Preparation

    OpenAIRE

    Frias, Ana; Serra, Célia

    2013-01-01

    Introduction: Water, a source of well-being, peace, fullness, freedom and harmony. For quite some time now, water is sought after for its renowned benefits in terms of relieving the physical and emotional changes which commonly occur during pregnancy. Objectives: 1) Describe the process of intervention, arising from the use of the aquatic environment in prenatal preparation 2) Relate the gains in health from prenatal preparation aquatica Method: Descriptive creating and applying a prep...

  16. Responses of Aquatic Bacteria to Terrestrial Runoff: Effects on Community Structure and Key Taxonomic Groups.

    Science.gov (United States)

    Le, Huong T; Ho, Cuong T; Trinh, Quan H; Trinh, Duc A; Luu, Minh T N; Tran, Hai S; Orange, Didier; Janeau, Jean L; Merroune, Asmaa; Rochelle-Newall, Emma; Pommier, Thomas

    2016-01-01

    Organic fertilizer application is often touted as an economical and effective method to increase soil fertility. However, this amendment may increase dissolved organic carbon (DOC) runoff into downstream aquatic ecosystems and may consequently alter aquatic microbial community. We focused on understanding the effects of DOC runoff from soils amended with compost, vermicompost, or biochar on the aquatic microbial community of a tropical reservoir. Runoff collected from a series of rainfall simulations on soils amended with different organic fertilizers was incubated for 16 days in a series of 200 L mesocosms filled with water from a downstream reservoir. We applied 454 high throughput pyrosequencing for bacterial 16S rRNA genes to analyze microbial communities. After 16 days of incubation, the richness and evenness of the microbial communities present decreased in the mesocosms amended with any organic fertilizers, except for the evenness in the mesocosms amended with compost runoff. In contrast, they increased in the reservoir water control and soil-only amended mesocosms. Community structure was mainly affected by pH and DOC concentration. Compared to the autochthonous organic carbon produced during primary production, the addition of allochthonous DOC from these organic amendments seemed to exert a stronger effect on the communities over the period of incubation. While the Proteobacteria and Actinobacteria classes were positively associated with higher DOC concentration, the number of sequences representing key bacterial groups differed between mesocosms particularly between the biochar runoff addition and the compost or vermi-compost runoff additions. The genera of Propionibacterium spp. and Methylobacterium spp. were highly abundant in the compost runoff additions suggesting that they may represent sentinel species of complex organic carbon inputs. Overall, this work further underlines the importance of studying the off-site impacts of organic fertilizers as

  17. Responses of Aquatic Bacteria to Terrestrial Runoff: Effects on Community Structure and Key Taxonomic Groups

    Science.gov (United States)

    Le, Huong T.; Ho, Cuong T.; Trinh, Quan H.; Trinh, Duc A.; Luu, Minh T. N.; Tran, Hai S.; Orange, Didier; Janeau, Jean L.; Merroune, Asmaa; Rochelle-Newall, Emma; Pommier, Thomas

    2016-01-01

    Organic fertilizer application is often touted as an economical and effective method to increase soil fertility. However, this amendment may increase dissolved organic carbon (DOC) runoff into downstream aquatic ecosystems and may consequently alter aquatic microbial community. We focused on understanding the effects of DOC runoff from soils amended with compost, vermicompost, or biochar on the aquatic microbial community of a tropical reservoir. Runoff collected from a series of rainfall simulations on soils amended with different organic fertilizers was incubated for 16 days in a series of 200 L mesocosms filled with water from a downstream reservoir. We applied 454 high throughput pyrosequencing for bacterial 16S rRNA genes to analyze microbial communities. After 16 days of incubation, the richness and evenness of the microbial communities present decreased in the mesocosms amended with any organic fertilizers, except for the evenness in the mesocosms amended with compost runoff. In contrast, they increased in the reservoir water control and soil-only amended mesocosms. Community structure was mainly affected by pH and DOC concentration. Compared to the autochthonous organic carbon produced during primary production, the addition of allochthonous DOC from these organic amendments seemed to exert a stronger effect on the communities over the period of incubation. While the Proteobacteria and Actinobacteria classes were positively associated with higher DOC concentration, the number of sequences representing key bacterial groups differed between mesocosms particularly between the biochar runoff addition and the compost or vermi-compost runoff additions. The genera of Propionibacterium spp. and Methylobacterium spp. were highly abundant in the compost runoff additions suggesting that they may represent sentinel species of complex organic carbon inputs. Overall, this work further underlines the importance of studying the off-site impacts of organic fertilizers as

  18. Microbially mediated mineral carbonation

    Science.gov (United States)

    Power, I. M.; Wilson, S. A.; Dipple, G. M.; Southam, G.

    2010-12-01

    Mineral carbonation involves silicate dissolution and carbonate precipitation, which are both natural processes that microorganisms are able to mediate in near surface environments (Ferris et al., 1994; Eq. 1). (Ca,Mg)SiO3 + 2H2CO3 + H2O → (Ca,Mg)CO3 + H2O + H4SiO4 + O2 (1) Cyanobacteria are photoautotrophs with cell surface characteristics and metabolic processes involving inorganic carbon that can induce carbonate precipitation. This occurs partly by concentrating cations within their net-negative cell envelope and through the alkalinization of their microenvironment (Thompson & Ferris, 1990). Regions with mafic and ultramafic bedrock, such as near Atlin, British Columbia, Canada, represent the best potential sources of feedstocks for mineral carbonation. The hydromagnesite playas near Atlin are a natural biogeochemical model for the carbonation of magnesium silicate minerals (Power et al., 2009). Field-based studies at Atlin and corroborating laboratory experiments demonstrate the ability of a microbial consortium dominated by filamentous cyanobacteria to induce the precipitation of carbonate minerals. Phototrophic microbes, such as cyanobacteria, have been proposed as a means for producing biodiesel and other value added products because of their efficiency as solar collectors and low requirement for valuable, cultivable land in comparison to crops (Dismukes et al., 2008). Carbonate precipitation and biomass production could be facilitated using specifically designed ponds to collect waters rich in dissolved cations (e.g., Mg2+ and Ca2+), which would allow for evapoconcentration and provide an appropriate environment for growth of cyanobacteria. Microbially mediated carbonate precipitation does not require large quantities of energy or chemicals needed for industrial systems that have been proposed for rapid carbon capture and storage via mineral carbonation (e.g., Lackner et al., 1995). Therefore, this biogeochemical approach may represent a readily

  19. Pesticide toxicity index for freshwater aquatic organisms

    Science.gov (United States)

    Munn, Mark D.; Gilliom, Robert J.

    2001-01-01

    The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program is designed to assess current water-quality conditions, changes in water quality over time, and the effects of natural and human factors on water quality for the Nation's streams and ground-water resources. For streams, one of the most difficult parts of the assessment is to link chemical conditions to effects on aquatic biota, particularly for pesticides, which tend to occur in streams as complex mixtures with strong seasonal patterns. A Pesticide Toxicity Index (PTI) was developed that combines pesticide exposure of aquatic biota (measured concentrations of pesticides in stream water) with toxicity estimates (standard endpoints from laboratory bioassays) to produce a single index value for a sample or site. The development of the PTI was limited to pesticide compounds routinely measured in NAWQA studies and to toxicity data readily available from existing databases. Qualifying toxicity data were found for one or more types of test organisms for 75 of the 83 pesticide compounds measured in NAWQA samples, but with a wide range of bioassays per compound (1 to 65). There were a total of 2,824 bioassays for the 75 compounds, including 287 48-hour EC50 values (concentration at which 50 percent of test organisms exhibit a nonlethal response) for freshwater cladocerans, 585 96-hour LC50 values (concentration lethal to 50 percent of test organisms) for freshwater benthic invertebrates, and 1,952 96-hour LC50 values for freshwater fish. The PTI for a particular sample is the sum of toxicity quotients (measured concentration divided by the median toxicity concentration from bioassays) for each detected pesticide. The PTI can be calculated for specific groups of pesticides and for specific taxonomic groups.While the PTI does not determine whether water in a sample is toxic, its values can be used to rank or compare the toxicity of samples or sites on a relative basis for use in further analysis or

  20. Avian schistosomes in French aquatic birds: a molecular approach.

    Science.gov (United States)

    Jouet, D; Ferté, H; Hologne, C; Kaltenbach, M L; Depaquit, J

    2009-06-01

    The prevalence of human cercarial dermatitis (HCD) caused by bird schistosomes appears to be increasing in France, in light of the impact of tourism combined with high densities of wild aquatic hosts in freshwater areas. The present work expands our knowledge of schistosome systematics by including samples of bird schistosomes collected from their natural hosts in France. Heads (318) and viscera (81) of aquatic birds belonging to 16 species from five orders, collecting during the hunting seasons or found dead, were autopsied for nasal and visceral schistosomes. Eggs and/or adults were analysed by molecular methods using the D2 domain and the second internal transcribed spacer (ITS-2) region of rDNA to determine species. Even if nasal eggs were polymorphic according to the host, all haplotypes were similar to that of Trichobilharzia regenti. Marked diversity of visceral species was observed. Final hosts under natural conditions were reported. For the first time, Trichobilharzia franki is reported in its natural bird hosts, Anas platyrhynchos, Anas crecca, Aythya fuligula and Cygnus olor. We also identified T. szidati in A. crecca and Anas clypeata. Bilharziella polonica was found in six species of aquatic birds, including Grus grus. This finding is the first record of bird schistosomes in this aquatic bird. Three new taxa of visceral schistosomes in Anser anser are strongly suspected according to their haplotypes. Futhermore, a new haplotype of visceral schistosomes isolated in Cygnus olor and similar to Allobilharzia visceralis was identified. PMID:19356266

  1. Aquatic Organic Matter Fluorescence - from phenomenon to application

    Science.gov (United States)

    Reynolds, Darren

    2014-05-01

    (bioluminescent reporter bacteria) for the discovery and characterization of bacteriophage and to assess their potential use as a bio-control/antimicrobial in the health and agri-food sectors. Presently, he is developing, in collaboration with industrial partners, in-situ fluorescence sensors to help further understand the role of dissolved organic matter in underpinning the microbial processes in aquatic systems through time, a project funded by the Natural Environment Research Council, UK.

  2. Phytoremediation Potential of Aquatic Macrophyte, Azolla

    OpenAIRE

    Sood, Anjuli; Uniyal, Perm L.; Prasanna, Radha; Ahluwalia, Amrik S.

    2011-01-01

    Aquatic macrophytes play an important role in the structural and functional aspects of aquatic ecosystems by altering water movement regimes, providing shelter to fish and aquatic invertebrates, serving as a food source, and altering water quality by regulating oxygen balance, nutrient cycles, and accumulating heavy metals. The ability to hyperaccumulate heavy metals makes them interesting research candidates, especially for the treatment of industrial effluents and sewage waste water. The us...

  3. Aquatic and Terrestrial Environment 2004

    DEFF Research Database (Denmark)

    Andersen, J. M.; Boutrup, S.; Bijl, L. van der;

    This report presents the 2004 results of the Danish National Monitoring and Assess-ment Programme for the Aquatic and Terrestrial Environments (NOVANA). 2004 was the first year in which terrestrial nature was included in the monitoring pro-gramme. The report reviews the state of the groundwater......, watercourses, lakes and marine waters and the pressures upon them and reviews the monitoring of terrestrial natural habitats and selected plants and animals. The report is based on the annual reports prepared for each subprogramme by the Topic Centres. The latter reports are mainly based on data collected and...

  4. Aquatic plants clean wastewater lagoons

    Energy Technology Data Exchange (ETDEWEB)

    1980-09-01

    Water weeds that grow profusely in warm tropical and subtropical regions have always been considered a nuisance; current research is focusing on methods to cull benefits from such aquatic proliferations. Weeds, especially the water hyacinth, are proving to be useful in the purification of wastewater lagoons. The plants extract inorganic and organic toxicants from the effluent. Hyacinths employed in experiments conducted in Puerto Rico are removed from the lagoons to prevent overcrowding. This harvest is sent through a digester to produce methane. (2 diagrams, 3 photos)

  5. EPA Region 7 Aquatic Focus Areas (ECO_RES.R7_AQUATIC_FOCUS_AREAS)

    Data.gov (United States)

    U.S. Environmental Protection Agency — This shapefile consists of 347 individual Aquatic Ecological System (AES) polygons that are the Aquatic Conservation Focus Areas for EPA Region 7. The focus areas...

  6. Radioactivity in the Canadian aquatic environment

    International Nuclear Information System (INIS)

    Sources of radionuclides arising from natural anthropogenic processes as well as technologically enhanced natural radiation are discussed. Transport, distribution and behaviour of these radionuclides in aquatic systems are influenced by physical, chemical, biological and geological processes and conditions in freshwater and marine environments. Dosimetry of aquatic organisms, as well as various methods of measuring dose rate are presented. Effects of ionizing radiation (acute and chronic exposure) on aquatic organisms, populations and ecosystems are reviewed. This review covers the entire spectrum of the aquatic environment. Results of many studies are summarized. 300+ refs

  7. Simplified Method for Dissolved DNA Determination in Aquatic Environments

    OpenAIRE

    DeFlaun, Mary F.; Paul, John H.; Davis, Dean

    1986-01-01

    A method was developed for the determination of dissolved DNA in aquatic environments. The method is based upon the concentration of dissolved DNA by ethanol precipitation of 0.2-μm-pore-size filtered water. The DNA in concentrated extracts was quantified by the fluorescence of Hoechst 33258-DNA complexes. Fluorescence not attributable to DNA was corrected for by DNase I digestion of the extracts and averaged 25% of the total fluorescence for all samples. The effectiveness of the procedure fo...

  8. Microbial Metagenomics: Beyond the Genome

    Science.gov (United States)

    Gilbert, Jack A.; Dupont, Christopher L.

    2011-01-01

    Metagenomics literally means “beyond the genome.” Marine microbial metagenomic databases presently comprise ˜400 billion base pairs of DNA, only ˜3% of that found in 1 ml of seawater. Very soon a trillion-base-pair sequence run will be feasible, so it is time to reflect on what we have learned from metagenomics. We review the impact of metagenomics on our understanding of marine microbial communities. We consider the studies facilitated by data generated through the Global Ocean Sampling expedition, as well as the revolution wrought at the individual laboratory level through next generation sequencing technologies. We review recent studies and discoveries since 2008, provide a discussion of bioinformatic analyses, including conceptual pipelines and sequence annotation and predict the future of metagenomics, with suggestions of collaborative community studies tailored toward answering some of the fundamental questions in marine microbial ecology.

  9. Persistent toxic substances in Mediterranean aquatic species.

    Science.gov (United States)

    Miniero, Roberto; Abate, Vittorio; Brambilla, Gianfranco; Davoli, Enrico; De Felip, Elena; De Filippis, Stefania P; Dellatte, Elena; De Luca, Silvia; Fanelli, Roberto; Fattore, Elena; Ferri, Fabiola; Fochi, Igor; Rita Fulgenzi, Anna; Iacovella, Nicola; Iamiceli, Anna Laura; Lucchetti, Dario; Melotti, Paolo; Moret, Ivo; Piazza, Rossano; Roncarati, Alessandra; Ubaldi, Alessandro; Zambon, Stefano; di Domenico, Alessandro

    2014-10-01

    Fish and fishery products may represent one of the main sources of dietary exposure to persistent toxic substances (PTSs) such as polychlorinated dibenzodioxins, dibenzofurans, and biphenyls; polybromodiphenyl ethers; organochlorine pesticides; perfluorooctanoic acid and perfluorooctane sulfonate; and inorganic mercury and methyl mercury. In this study, PTS contamination of Mediterranean fish and crustaceans caught in Italian coastal waters was investigated in order to increase the representativeness of the occurrence database for wild species. The objectives were to verify the suitability of regulatory limits for PTSs, identify background concentrations values, if any, and examine the possible sources of variability when assessing the chemical body burdens of aquatic species. Twelve wild species of commercial interest and two farmed fish species were chosen. Excluding methyl mercury, chemical concentrations found in wild species fell generally towards the low ends of the concentration ranges found in Europe according to EFSA database and were quite lower than the tolerable maximum levels established in the European Union; farmed fish always showed contamination levels quite lower than those detected in wild species. The data obtained for wild species seemed to confirm the absence of local sources of contamination in the chosen sampling areas; however, species contamination could exceed regulatory levels even in the absence of specific local sources of contamination as a result of the position in the food web and natural variability in species' lifestyle. A species-specific approach to the management of contamination in aquatic organisms is therefore suggested as an alternative to a general approach based only on contaminant body burden. A chemical-specific analysis performed according to organism position in the food chain strengthened the need to develop this approach. PMID:25020099

  10. Contamination, classification and geoecosystematic relevance of aquatic sediments

    International Nuclear Information System (INIS)

    Present knowledge about aquatic sediments and their contamination is summarized in a literature review. For geoecosystematic purposes, the classification schemes elaborated in the literature are in the initial stages, showing deficits with respect to sedimentary structure and the relevant fixation and release processes of heavy metals and toxic organic compounds. The factor regulating the release of phosporus and nitrogen compounds out of the pore water and at the top layer of the sediments are illustrated with regard to the processes at the sediment/water interface. The role of microbial releases and the hydrodynamic and diagenetic influence on these processes are still not fully understood. In comparison with subaerial soils, techniques for measuring relevant soil physical and hydrodynamic parameters are less well developed. The valuation criteria of sediment contamination, their applicability to other contamination sites, and the comparability of results are still limited. Each chapter closes with an overview of open questions. (orig.)

  11. The Amphibian Chytrid Fungus, Batrachochytrium dendrobatidis, in Fully Aquatic Salamanders from Southeastern North America

    OpenAIRE

    Chatfield, Matthew W. H.; Moler, Paul; Richards-Zawacki, Corinne L.

    2012-01-01

    Little is known about the impact that the pathogenic amphibian chytrid fungus, Batrachochytrium dendrobatidis (Bd), has on fully aquatic salamander species of the eastern United States. As a first step in determining the impacts of Bd on these species, we aimed to determine the prevalence of Bd in wild populations of fully aquatic salamanders in the genera Amphiuma, Necturus, Pseudobranchus, and Siren. We sampled a total of 98 salamanders, representing nine species from sites in Florida, Miss...

  12. Passive electroreception in aquatic mammals.

    Science.gov (United States)

    Czech-Damal, Nicole U; Dehnhardt, Guido; Manger, Paul; Hanke, Wolf

    2013-06-01

    Passive electroreception is a sensory modality in many aquatic vertebrates, predominantly fishes. Using passive electroreception, the animal can detect and analyze electric fields in its environment. Most electric fields in the environment are of biogenic origin, often produced by prey items. These electric fields can be relatively strong and can be a highly valuable source of information for a predator, as underlined by the fact that electroreception has evolved multiple times independently. The only mammals that possess electroreception are the platypus (Ornithorhynchus anatinus) and the echidnas (Tachyglossidae) from the monotreme order, and, recently discovered, the Guiana dolphin (Sotalia guianensis) from the cetacean order. Here we review the morphology, function and origin of the electroreceptors in the two aquatic species, the platypus and the Guiana dolphin. The morphology shows certain similarities, also similar to ampullary electroreceptors in fishes, that provide cues for the search for electroreceptors in more vertebrate and invertebrate species. The function of these organs appears to be very similar. Both species search for prey animals in low-visibility conditions or while digging in the substrate, and sensory thresholds are within one order of magnitude. The electroreceptors in both species are innervated by the trigeminal nerve. The origin of the accessory structures, however, is completely different; electroreceptors in the platypus have developed from skin glands, in the Guiana dolphin, from the vibrissal system. PMID:23187861

  13. Flow cytometric assessment of microbial abundance in the near-field area of seawater reverse osmosis concentrate discharge

    KAUST Repository

    Van Der Merwe, Riaan

    2014-06-01

    The discharge of concentrate and other process waters from seawater reverse osmosis (SWRO) plant operations into the marine environment may adversely affect water quality in the near-field area surrounding the outfall. The main concerns are the increase in salt concentration in receiving waters, which results in a density increase and potential water stratification near the outfall, and possible increases in turbidity, e.g., due to the discharge of filter backwash waters. Changes in ambient water quality may affect microbial abundance in the area, for example by hindering the photosynthesis process or disrupting biogenesis. It is widely accepted that marine biodiversity is lower in more extreme conditions, such as high salinity environments. As aquatic microbial communities respond very rapidly to changes in their environment, they can be used as indicators for monitoring ambient water quality. The objective of this study was to assess possible changes in microbial abundance as a result of concentrate discharge into the near-field area (<. 25. m) surrounding the outfall of the King Abdullah University of Science and Technology (KAUST) SWRO plant. Flow cytometric (FCM) analysis was conducted in order to rapidly determine microbial abundance on a single-cell level in 107 samples, taken by diving, from the discharge area, the intake area and two control sites. FCM analysis combined the measurement of distinct scatter of cells and particles, autofluorescence of cyanobacteria and algae, and fluorescence after staining of nucleic acids with SYBR® Green for a total bacterial count. The results indicate that changes in microbial abundance in the near-field area of the KAUST SWRO outfall are minor and appear to be the result of a dilution effect rather than a direct impact of the concentrate discharge. © 2014 Elsevier B.V.

  14. Short-term degradation of terrestrial DOM in the coastal ocean: Implications for nutrient subsidies and marine microbial community structure

    Science.gov (United States)

    Oliver, A. A.; Tank, S. E.; Kellogg, C.

    2015-12-01

    The export of riverine dissolved organic matter (DOM) to the coastal ocean provides an important link between terrestrial and aquatic ecosystems. The coastal temperate rainforests of British Columbia contain extensive freshwater networks that export significant amounts of water and DOM to the ocean, representing significant cross-system hydrologic and biogeochemical linkages. To better understand the importance of these linkages and implications for ecosystem structure and function, we used an experimental approach to investigate the role of microbial and photodegradation transformations of DOM exported from small coastal catchments to the marine environment. At two time periods (August 2014, March 2015), stream water from the outlets of two coastal watersheds was filtered (dark conditions for 8 days. At 0, 3 and 8 days, samples were analyzed for DOC, TDN, DIN, and DON. Changes in DOM composition were determined with optical characterization techniques such as absorbance (SUVA, S, Sr) and fluorescence (EEM). Microbial community response was measured using cell counts and DNA/RNA amplicon sequencing to determine changes in bacterial abundance and community composition. General patterns indicated that microbial communities from the high salinity treatment (i.e. most marine) were the most effective at utilizing freshwater DOM, especially under light conditions. In some treatments, DOM appeared as a potential source of inorganic nitrogen with corresponding shifts in microbial community composition. Incubations using inoculum from low and mid salinity levels demonstrated smaller changes, indicating that DOM exported from these streams may not be extensively utilized until exposed to higher salinity environments further from stream outlets. These results suggest a role for terrestrial sourced-DOM as a subsidy for microbial communities within the near shore marine environment, and emphasize that changes in DOM exports due to land development or climate change may have

  15. Correlating microbial community profiles with geochemical conditions in a watershed heavily contaminated by an antimony tailing pond.

    Science.gov (United States)

    Xiao, Enzong; Krumins, Valdis; Tang, Song; Xiao, Tangfu; Ning, Zengping; Lan, Xiaolong; Sun, Weimin

    2016-08-01

    Mining activities have introduced various pollutants to surrounding aquatic and terrestrial environments, causing adverse impacts to the environment. Indigenous microbial communities are responsible for the biogeochemical cycling of pollutants in diverse environments, indicating the potential for bioremediation of such pollutants. Antimony (Sb) has been extensively mined in China and Sb contamination in mining areas has been frequently encountered. To date, however, the microbial composition and structure in response to Sb contamination has remained overlooked. Sb and As frequently co-occur in sulfide-rich ores, and co-contamination of Sb and As is observed in some mining areas. We characterized, for the first time, the microbial community profiles and their responses to Sb and As pollution from a watershed heavily contaminated by Sb tailing pond in Southwest China. The indigenous microbial communities were profiled by high-throughput sequencing from 16 sediment samples (535,390 valid reads). The comprehensive geochemical data (specifically, physical-chemical properties and different Sb and As extraction fractions) were obtained from river water and sediments at different depths as well. Canonical correspondence analysis (CCA) demonstrated that a suite of in situ geochemical and physical factors significantly structured the overall microbial community compositions. Further, we found significant correlations between individual phylotypes (bacterial genera) and the geochemical fractions of Sb and As by Spearman rank correlation. A number of taxonomic groups were positively correlated with the Sb and As extractable fractions and various Sb and As species in sediment, suggesting potential roles of these phylotypes in Sb biogeochemical cycling. PMID:27182975

  16. Microbial "social networks"

    Science.gov (United States)

    2015-01-01

    Background It is well understood that distinct communities of bacteria are present at different sites of the body, and that changes in the structure of these communities have strong implications for human health. Yet, challenges remain in understanding the complex interconnections between the bacterial taxa within these microbial communities and how they change during the progression of diseases. Many recent studies attempt to analyze the human microbiome using traditional ecological measures and cataloging differences in bacterial community membership. In this paper, we show how to push metagenomic analyses beyond mundane questions related to the bacterial taxonomic profiles that differentiate one sample from another. Methods We develop tools and techniques that help us to investigate the nature of social interactions in microbial communities, and demonstrate ways of compactly capturing extensive information about these networks and visually conveying them in an effective manner. We define the concept of bacterial "social clubs", which are groups of taxa that tend to appear together in many samples. More importantly, we define the concept of "rival clubs", entire groups that tend to avoid occurring together in many samples. We show how to efficiently compute social clubs and rival clubs and demonstrate their utility with the help of examples including a smokers' dataset and a dataset from the Human Microbiome Project (HMP). Results The tools developed provide a framework for analyzing relationships between bacterial taxa modeled as bacterial co-occurrence networks. The computational techniques also provide a framework for identifying clubs and rival clubs and for studying differences in the microbiomes (and their interactions) of two or more collections of samples. Conclusions Microbial relationships are similar to those found in social networks. In this work, we assume that strong (positive or negative) tendencies to co-occur or co-infect is likely to have

  17. Microbial bioavailability of 2,2',4,4'-Tetrabromodiphenyl ether (BDE-47) in natural sediments from major rivers of China.

    Science.gov (United States)

    Zhu, Baotong; Xia, Xinghui; Wu, Shan; Lu, Xiaoxia; Yin, Xin'an

    2016-06-01

    Microbial degradation plays a crucial role in eliminating polybrominated diphenyl ethers (PBDEs) in environments. However, the microbial bioavailability of PBDEs in aquatic sediments is not well understood. In this work, the bioavailability of 2,2',4,4'-tetrabromodiphenyl ether (BDE-47), a typical PBDE congener, to PBDE-degrading microorganisms in natural sediments from six Chinese rivers under anaerobic conditions was investigated. The contents of black carbon (BC) and total organic carbon (TOC) in the six sediment samples were in the range of 0.025%-0.30% and 0.03%-3.38%, respectively. BDE-47 desorption from various sediments was fitted well with the first-order three-compartment desorption model. The desorbing fraction of sediment-associated BDE-47 at each desorption time interval exhibited a significant negative correlation with the BC content (p  0.05). Furthermore, there was a significant positive correlation of desorbing fraction of BDE-47 from sediments with its microbial debromination ratio (p bioavailability to microorganisms in anaerobic river sediments is mainly influenced by the content of sediment BC which controls the desorbing fraction of sediment-associated BDE-47. PMID:27031801

  18. Structural characterization of terrestrial microbial Mn oxides from Pinal Creek, AZ

    OpenAIRE

    Bargar, John

    2009-01-01

    The microbial catalysis of Mn(II) oxidation is believed to be a dominant source of abundant sorption- and redox-active Mn oxides in marine, freshwater, and subsurface aquatic environments. In spite of their importance, environmental oxides of known biogenic origin have generally not been characterized in detail from a structural perspective. Hyporheic zone Mn oxide grain coatings at Pinal Creek, Arizona, a metals-contaminated stream, have been identified as being dominantly microbial in origi...

  19. Spatial Pattern Dynamics in Aquatic Ecosystem Modelling

    NARCIS (Netherlands)

    Hong Li

    2009-01-01

    In this thesis, several modelling approaches are explored to represent spatial pattern dynamics of aquatic populations in aquatic ecosystems by the combination of models, knowledge and data in different scales. It is shown that including spatially distributed inputs retrieved from Remote Sensing i

  20. Control of Fish and Aquatic Plants.

    Science.gov (United States)

    Hesser, R. B.; And Others

    This agriculture extension service publication from Pennsylvania State University is a handbook for the water body manager. The bulk of the contents deals with aquatic plant control. The different types of aquatic plants, their reproduction and growth, and their role in the ecology of the water body are introduced in this main section. Also, the…

  1. Enhancing Metagenomics Investigations of Microbial Interactions with Biofilm Technology

    OpenAIRE

    Kakirde, Kavita S.; McLean, Robert J. C.

    2013-01-01

    Investigations of microbial ecology and diversity have been greatly enhanced by the application of culture-independent techniques. One such approach, metagenomics, involves sample collections from soil, water, and other environments. Extracted nucleic acids from bulk environmental samples are sequenced and analyzed, which allows microbial interactions to be inferred on the basis of bioinformatics calculations. In most environments, microbial interactions occur predominately in surface-adheren...

  2. Diversity and Distribution of Aquatic Fungal Communities in the Ny-Ålesund Region, Svalbard (High Arctic) : Aquatic Fungi in the Arctic.

    Science.gov (United States)

    Zhang, Tao; Wang, Neng-Fei; Zhang, Yu-Qin; Liu, Hong-Yu; Yu, Li-Yan

    2016-04-01

    We assessed the diversity and distribution of fungi in 13 water samples collected from four aquatic environments (stream, pond, melting ice water, and estuary) in the Ny-Ålesund Region, Svalbard (High Arctic) using 454 pyrosequencing with fungi-specific primers targeting the internal transcribed spacer (ITS) region of the ribosomal rRNA gene. Aquatic fungal communities in this region showed high diversity, with a total of 43,061 reads belonging to 641 operational taxonomic units (OTUs) being found. Of these OTUs, 200 belonged to Ascomycota, 196 to Chytridiomycota, 120 to Basidiomycota, 13 to Glomeromycota, and 10 to early diverging fungal lineages (traditional Zygomycota), whereas 102 belonged to unknown fungi. The major orders were Helotiales, Eurotiales, and Pleosporales in Ascomycota; Chytridiales and Rhizophydiales in Chytridiomycota; and Leucosporidiales and Sporidiobolales in Basidiomycota. The common fungal genera Penicillium, Rhodotorula, Epicoccum, Glaciozyma, Holtermanniella, Betamyces, and Phoma were identified. Interestingly, the four aquatic environments in this region harbored different aquatic fungal communities. Salinity, conductivity, and temperature were important factors in determining the aquatic fungal diversity and community composition. The results suggest the presence of diverse fungal communities and a considerable number of potentially novel fungal species in Arctic aquatic environments, which can provide reliable data for studying the ecological and evolutionary responses of fungi to climate change in the Arctic ecosystem. PMID:26492897

  3. Phytoremediation potential of aquatic macrophyte, Azolla.

    Science.gov (United States)

    Sood, Anjuli; Uniyal, Perm L; Prasanna, Radha; Ahluwalia, Amrik S

    2012-03-01

    Aquatic macrophytes play an important role in the structural and functional aspects of aquatic ecosystems by altering water movement regimes, providing shelter to fish and aquatic invertebrates, serving as a food source, and altering water quality by regulating oxygen balance, nutrient cycles, and accumulating heavy metals. The ability to hyperaccumulate heavy metals makes them interesting research candidates, especially for the treatment of industrial effluents and sewage waste water. The use of aquatic macrophytes, such as Azolla with hyper accumulating ability is known to be an environmentally friendly option to restore polluted aquatic resources. The present review highlights the phytoaccumulation potential of macrophytes with emphasis on utilization of Azolla as a promising candidate for phytoremediation. The impact of uptake of heavy metals on morphology and metabolic processes of Azolla has also been discussed for a better understanding and utilization of this symbiotic association in the field of phytoremediation. PMID:22396093

  4. Microbial response to triepthylphosphate

    Energy Technology Data Exchange (ETDEWEB)

    Hazen, T.C.; Santo Domingo, J.W.; Berry, C.J.

    1997-05-01

    The effect of triethylphosphate (TEP) on the activity of a landfill aquifer microbial community was evaluated using standard techniques and in situ hybridizations with phylogenetic probes. Benzene was used as an external carbon source to monitor degradation of an aromatic compound in TEP amended microcosms. Microscopical and viable counts were higher in TEP containing microcosms when compared to unamended controls. A significant increase in metabolic activity was also observed for TEP amended samples as determined by the number of cells hybridizing to an eubacterial probe. In addition, the number of beta and gamma Proteobacteria increased from undetectable levels prior to the study to 15-29% of the total bacteria in microcosms containing TEP and benzene. In these microcosms, nearly 40% of the benzene was degraded during the incubation period compared to less than 5% in unamended microcosms. While TEP has previously been used as an alternate phosphate source in the bioremediation of chlorinated aliphatics, this study shows that it can also stimulate the microbial degradation of aromatics in phosphate limited aquifers.

  5. Nitrogen cycle in microbial mats: completely unknown?

    Science.gov (United States)

    Coban, O.; Bebout, B.

    2015-12-01

    Microbial mats are thought to have originated around 3.7 billion years ago, most likely in the areas around submarine hydrothermal vents, which supplied a source of energy in the form of reduced chemical species from the Earth's interior. Active hydrothermal vents are also believed to exist on Jupiter's moon Europa, Saturn's moon Enceladus, and on Mars, earlier in that planet's history. Microbial mats have been an important force in the maintenance of Earth's ecosystems and the first photosynthesis was also originated there. Microbial mats are believed to exhibit most, if not all, biogeochemical processes that exist in aquatic ecosystems, due to the presence of different physiological groups of microorganisms therein. While most microbially mediated biogeochemical transformations have been shown to occur within microbial mats, the nitrogen cycle in the microbial mats has received very little study in spite of the fact that nitrogen usually limits growth in marine environments. We will present the first results in the determination of a complete nitrogen budget for a photosynthetic microbial mat. Both in situ sources and sinks of nitrogen in photosynthetic microbial mats are being measured using stable isotope techniques. Our work has a particular focus on recently described, but poorly understood, processes, e.g., anammox and dissimilatory nitrate reduction, and an emphasis on understanding the role that nitrogen cycling may play in generating biogenic nitrogen isotopic signatures and biomarker molecules. Measurements of environmental controls on nitrogen cycling should offer insight into the nature of co-evolution of these microbial communities and their planets of origin. Identifying the spatial (microscale) as well as temporal (diel and seasonal) distribution of nitrogen transformations, e.g., rates of nitrification and denitrification, within mats, particularly with respect to the distribution of photosynthetically-produced oxygen, is anticipated. The results

  6. Activation Analysis In Studies Of An Aquatic Ecosystem

    International Nuclear Information System (INIS)

    For the purposes of radiological protection it is important to know the environmental concentrations of stable elements in order to be able to predict, for equilibrium conditions, the possible maximum concentrations of the radioelements under investigation. At the Joint Research Centre of EURATOM in Ispra we have begun a study of certain elements associated with reactor effluents and radioactive waste disposal (Mn, Cu, Zn, Cs, Co, Fe, and Sr) in different components of the Lago Maggiore and the Creek Novellino. Such information for an aquatic ecosystem entails the analyses of a large number of highly diversified samples: water, sediment, plants and animals. The project was made feasible by the use of automated neutron activation analysis procedures employing a semi-conductor detector and electronic computers. The results obtained are discussed in the light of contamination of the aquatic ecosystem by the radioactive isotopes of the above-mentioned elements, and their distribution among the different components investigated. (author)

  7. Environmental bacteriophages : viruses of microbes in aquatic ecosystems

    Directory of Open Access Journals (Sweden)

    TélesphoreSIME - NGANDO

    2014-07-01

    Full Text Available Since the discovery 2-3 decades ago that viruses of microbes are abundant in marine ecosystems, viral ecology has grown increasingly to reach the status of a full scientific discipline in environmental sciences. A dedicated ISVM society, the International Society for Viruses of Microorganisms (http://www.isvm.org/, was recently launched. Increasing studies in viral ecology are sources of novel knowledge related to the biodiversity of living things, the functioning of ecosystems, and the evolution of the cellular world. This is because viruses are perhaps the most diverse, abundant, and ubiquitous biological entities in the biosphere, although local environmental conditions enrich for certain viral types through selective pressure. They exhibit various lifestyles that intimately depend on the deep-cellular mechanisms, and are ultimately replicated by members of all three domains of cellular life (Bacteria, Eukarya, Archaea, as well as by giant viruses of some eukaryotic cells. This establishes viral parasites as microbial killers but also as cell partners or metabolic manipulators in microbial ecology. The present chapter sought to review the literature on the diversity and functional roles of viruses of microbes in environmental microbiology, focusing primarily on prokaryotic viruses (i.e. phages in aquatic ecosystems, which form the bulk of our knowledge in modern environmental viral ecology.

  8. Survival and detection of bacteria in an aquatic environment.

    OpenAIRE

    Amy, P. S.; Hiatt, H D

    1989-01-01

    A genetically engineered plasmid, pPSA131, was used as a DNA probe to detect homologous DNA in Escherichia coli HB101(pPSA131) after it was mixed with aquatic microorganisms from Lake Mead, Nevada, water samples. An isolate from the pLAFR1 chromosomal library of Pseudomonas syringae Cit 7 was used to detect parent P. syringae Cit 7 that had been mixed with Lake Mead water. E. coli(pPSA131) was kept in variously treated samples of lake water or buffer, and its survival was measured by viable c...

  9. Childhood microbial keratitis

    Directory of Open Access Journals (Sweden)

    Abdullah G Al Otaibi

    2012-01-01

    Conclusion: Children with suspected microbial keratitis require comprehensive evaluation and management. Early recognition, identifying the predisposing factors and etiological microbial organisms, and instituting appropriate treatment measures have a crucial role in outcome. Ocular trauma was the leading cause of childhood microbial keratitis in our study.

  10. EVA Suit Microbial Leakage Investigation Project

    Science.gov (United States)

    Falker, Jay; Baker, Christopher; Clayton, Ronald; Rucker, Michelle

    2016-01-01

    The objective of this project is to collect microbial samples from various EVA suits to determine how much microbial contamination is typically released during simulated planetary exploration activities. Data will be released to the planetary protection and science communities, and advanced EVA system designers. In the best case scenario, we will discover that very little microbial contamination leaks from our current or prototype suit designs, in the worst case scenario, we will identify leak paths, learn more about what affects leakage--and we'll have a new, flight-certified swab tool for our EVA toolbox.

  11. Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

    OpenAIRE

    Mueller, Ryan S.; Bryson, Sam; Kieft, Brandon; Li, Zhou; Pett-Ridge, Jennifer; Chavez, Francisco; Hettich, Robert L.; Pan, Chongle; Mayali, Xavier

    2015-01-01

    Heterotrophic microbes are critical components of aquatic food webs. Linkages between populations and the substrates they utilize are not well defined. We present the metagenome of microbial communities from the coastal Pacific Ocean exposed to various nutrient additions in order to better understand substrate utilization and partitioning in this environment.

  12. Metagenome sequencing of a coastal marine microbial community from monterey bay, california.

    Science.gov (United States)

    Mueller, Ryan S; Bryson, Sam; Kieft, Brandon; Li, Zhou; Pett-Ridge, Jennifer; Chavez, Francisco; Hettich, Robert L; Pan, Chongle; Mayali, Xavier

    2015-01-01

    Heterotrophic microbes are critical components of aquatic food webs. Linkages between populations and the substrates they utilize are not well defined. We present the metagenome of microbial communities from the coastal Pacific Ocean exposed to various nutrient additions in order to better understand substrate utilization and partitioning in this environment. PMID:25931598

  13. Human Exploitation of Aquatic Landscapes. Editorial

    Directory of Open Access Journals (Sweden)

    Ricardo Fernandes

    2014-11-01

    Full Text Available Aquatic landscapes such as rivers, lakes, and seas played an important role in past human behaviour, affecting modes of subsistence, patterns of mobility, access to material resources, and technological choices and their developments. The interaction with aquatic landscapes was also influential in the establishment of economic and social structures and in the formation of communal identities. The aim of this special themed issue of Internet Archaeology is to contribute to a better understanding of different forms of human interaction with aquatic landscapes.

  14. Aquatic invasive species: Lessons from cancer research

    Science.gov (United States)

    Sepulveda, Adam; Ray, Andrew; Al-Chokhachy, Robert K.; Muhlfeld, Clint C.; Gresswell, Robert E.; Gross, Jackson A.; Kershner, Jeffrey L.

    2014-01-01

    Aquatic invasive species are disrupting ecosystems with increasing frequency. Successful control of these invasions has been rare: Biologists and managers have few tools for fighting aquatic invaders. In contrast, the medical community has long worked to develop tools for preventing and fighting cancer. Its successes are marked by a coordinated research approach with multiple steps: prevention, early detection, diagnosis, treatment options and rehabilitation. The authors discuss how these steps can be applied to aquatic invasive species, such as the American bullfrog (Lithobates catesbeianus), in the Northern Rocky Mountain region of the United States, to expedite tool development and implementation along with achievement of biodiversity conservation goals.

  15. A Mixed Picture of AQUATIC PRODUCTS

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    @@ Aquatic products constitute an important part of China's international trade in agricultural products with the strongest competitiveness for export.The aquatic products industry of apparent competitive edge has maintained a considerable trade surplus despite the general trend of trade deficit among agricultural products in recent years.Nevertheless,the great changes taking place in the global economic and trade pattern in late years have given rise to the increasing uncertainties of the supply and demand as well as the price in the international aquatic products market.

  16. Aspects of Aquatic Pollution in Nigeria

    Directory of Open Access Journals (Sweden)

    A.T. Ekubo

    2011-11-01

    Full Text Available Water pollution is a major problem in the global context. Yet aquatic resources consists of extremely wide range of floral and fauna resources which offer a broad array of goods with potential utilitarian application in agriculture, innovative industry and the pharmaceutical industry which renders valuable benefits and services. The slow poisoning of the waters is witnessed in Nigeria and the destruction of vegetation and agricultural land by oil spills which occur during petroleum operations. But since the inception of the oil industry in Nigeria, more than twenty-five years ago, there has been no concerned and effective effort on the part of the government, let alone the oil operators, to control environmental problems associated with the industry'. The article reviews the meaning of water pollution, water pollution categories, point source pollution, non-point source pollution, ground water pollution, causes of water pollution, pathogens, chemicals and other contaminants, thermal pollution, transport and chemical reactions of pollution, measurement of pollution, sampling, physical testing, chemical testing, biological testing, control of water pollution, domestic sewage, industrial waste water, agricultural waste water, construction site storm water urban runoff (storm water, radiation pollution, the Federal Environmental Protection Agency, The National Policy on Environment, The national environmental reference laboratory, Water resources management, Strategies under the National Policy on Environment, Industrial water pollution control programme, Industrial effluent standards to provide some information on the Nigeria situation.

  17. Production of extracellular nucleic acids by genetically altered bacteria in aquatic-environment microcosms

    International Nuclear Information System (INIS)

    The factors which affect the production of extracellular DNA by genetically altered strains of Escherichia coli, Pseudomonas aeruginosa, Pseudomonas cepacia, and Bradyrhizobium japonicum in aquatic environments were investigated. Cellular nucleic acids were labeled in vivo by incubation with [3H]thymidine or [3H]adenine, and production of extracellular DNA in marine waters, artificial seawater, or minimal salts media was determined by detecting radiolabeled macromolecules in incubation filtrates. The presence or absence of the ambient microbial community had little effect on the production of extracellular DNA. Three of four organisms produced the greatest amounts of extracellular nucleic acids when incubated in low-salinity media (2% artificial seawater) rather than high-salinity media (10 to 50% artificial seawater). The greatest production of extracellular nucleic acids by P. cepacia occurred at pH 7 and 37 degree C, suggesting that extracellular-DNA production may be a normal physiologic function of the cell. Incubation of labeled P. cepacia cells in water from Bimini Harbor, Bahamas, resulted in labeling of macromolecules of the ambient microbial population. Collectively these results indicate that (i) extracellular-DNA production by genetically altered bacteria released into aquatic environments is more strongly influenced by physicochemical factors than biotic factors, (ii) extracellular-DNA production rates are usually greater for organisms released in freshwater than marine environments, and (iii) ambient microbial populations can readily utilize materials released by these organisms

  18. The C.E.B.A.S.-Minimodule: Behaviour of an Artificial Aquatic Ecological System During Spaceflight

    Science.gov (United States)

    Bluem, V.; Andriske, M.; Paris, F.; Voeste, D.

    The C.E.B.A.S.-Minimodule, a closed aquatic ecosystem integrated into a middeck locker and consisting of a Zoological (animal tanks), a Botanical (plant bioreactor), a Microbial (bacteria filter) and an Electronic Component (data acquisition/control system) was flown on the STS-89 spaceshuttle mission in January 1998 for 9 days. Preflight the plant bioreactor was loaded with 53 g of Ceratophyllum demersum (coontail) and the animal tanks with 4 adult pregnant females of the fish, Xiphophorus helleri (sword-tails), 200 juveniles of the same species less than 1 week of age, 38 large and 30 juvenile Biomphalaria glabrata water snails. The filter compartment was filled with 200 g of lava grain inoculated with laboratory strains of ammonia-oxidizing bacteria. A ground reference was undertaken with the same biological setup with a delay of 4 d. After an adaptation period of 5 d the system was closed and integrated into the spaceshuttle one day before launch. Video recordings of the animals were automatically taken for 10 minutes in 2-hour periods; the tapes were changed daily by the astronauts. The chemical and physical data for the aquatic system were within the expected range and were closely comparable in comparison to the ground reference. After 9 d under space conditions, the plant biomass increased to 117 g. The plants were all found in very good condition. All 4 adult female fish were retrieved in a good physiological condition. The juvenile fishes had a survival rate of about 33 %. Almost 97 % of the snails had survived and produced more than 250 neonates and 40 spawning packs. All samples were distributed according to a defined schedule and satisfied all scientific needs of the involved 12 principal investigators. This was the first successful spaceflight of an artificial aquatic ecosystem containing vertebrates, invertebrates, higher plants and microorganisms self-sustained by its inhabitants only. C.E.B.A.S. in a modified form and biological setup is a

  19. Plant-microbe interaction in aquatic system and their role in the management of water quality: a review

    Science.gov (United States)

    Srivastava, Jatin K.; Chandra, Harish; Kalra, Swinder J. S.; Mishra, Pratibha; Khan, Hena; Yadav, Poonam

    2016-04-01

    Microbial assemblage as biofilm around the aquatic plant forms a firm association that largely depends upon the mutual supplies of nutrients, e.g., microbes interact with plants in an aquatic system most likely for organic carbon and oxygen, whereas plants receive defensive immunity and mineral exchange. Apart from the mutual benefits, plant-microbe interactions also influence the water quality especially at rhizosphere providing inherent ability to the aquatic system for the mitigation of pollution from the water column. The review presents and in-depth information along with certain research advancements made in the field of ecological and bio/chemical aspects of plant-microbe interactions and the underlying potential to improve water quality.

  20. Optimization of analytical techniques to characterize antibiotics in aquatic systems

    International Nuclear Information System (INIS)

    Antibiotics are considered as pollutants when they are present in aquatic ecosystems, ultimate receptacles of anthropogenic substances. These compounds are studied as their persistence in the environment or their effects on natural organisms. Numerous efforts have been made worldwide to assess the environmental quality of different water resources for the survival of aquatic species, but also for human consumption and health risk related. Towards goal, the optimization of analytical techniques for these compounds in aquatic systems remains a necessity. Our objective is to develop extraction and detection methods for 12 molecules of aminoglycosides and colistin in sewage treatment plants and hospitals waters. The lack of analytical methods for analysis of these compounds and the deficiency of studies for their detection in water is the reason for their study. Solid Phase Extraction (SPE) in classic mode (offline) or online followed by Liquid Chromatography analysis coupled with Mass Spectrometry (LC/MS/MS) is the most method commonly used for this type of analysis. The parameters are optimized and validated to ensure the best conditions for the environmental analysis. This technique was applied to real samples of wastewater treatment plants in Bordeaux and Lebanon. (author)

  1. Toxicity of ferric chloride sludge to aquatic organisms.

    Science.gov (United States)

    Sotero-Santos, Rosana B; Rocha, Odete; Povinelli, Jurandyr

    2007-06-01

    Iron-rich sludge from a drinking water treatment plant (DWTP) was investigated regarding its toxicity to aquatic organisms and physical and chemical composition. In addition, the water quality of the receiving stream near the DWTP was evaluated. Experiments were carried out in August 1998, February 1999 and May 1999. Acute toxicity tests were carried out on a cladoceran (Daphnia similis), a midge (Chironomus xanthus) and a fish (Hyphessobrycon eques). Chronic tests were conducted only on D. similis. Acute sludge toxicity was not detected using any of the aquatic organisms, but chronic effects were observed upon the fecundity of D. similis. Although there were relatively few sample dates, the results suggested that the DWTP sludge had a negative effect on the receiving body as here was increased suspended matter, turbidity, conductivity, chemical oxygen demand (COD) and hardness in the water downstream of the DWTP effluent discharge. The ferric chloride sludge also exhibited high heavy metal concentrations revealing a further potential for pollution and harmful chronic effects on the aquatic biota when the sludge is disposed of without previous treatment. PMID:17416403

  2. Ohio Aquatic Gap Analysis-An Assessment of the Biodiversity and Conservation Status of Native Aquatic Animal Species

    Science.gov (United States)

    Covert, S. Alex; Kula, Stephanie P.; Simonson, Laura A.

    2007-01-01

    homogeneity and labeling these areas using categories defined by the classification system. The variables were linked to the 1:100,000-scale streams of the National Hydrography Dataset of the USGS. Through discussions with Ohio aquatic experts, OH-GAP identified eight separate enduring physical features which, when combined, form the physical habitat type: * Shreve link (a measure of stream size) * Downstream Shreve link (a measure of stream connectivity and size) * Sinuosity * Gradient * Bedrock * Stream temperature * Character of glacial drift * Glacial-drift thickness Potential distribution models were developed for 130 fish, 70 bivalve, and 17 native crayfish species. These models are based on 5,686 fish, 4,469 crayfish, and 2,899 freshwater bivalve (mussels and clams) sampling locations, the variables describing the physical habitat types, and variables indicating the major drainage basins and Omernik's Level III ecoregion. All potential species distributions are displayed and analyzed at the 14-digit hydrologic unit (14-HUs), or subwatershed, level. Mainland Ohio contains 1,749 14-HUs. All statistics and conclusions, as well as spatial data, are discussed and presented in terms of these units. The Ohio Aquatic Gap Analysis Project compiled a map of public and private conservation lands and OH-GAP classified the lands into four status categories (status 1 through status 4) by the degree of protection offered based on management practices. A status of 1 denotes the highest, most permanent level of maintenance, and status 4 represents the lowest level of biodiversity management, or unknown status. The results of this mapping show that only about 3.7 percent of the state's land (4.3 percent if lakes and reservoirs are also included) is protected for conservation, either publicly or privately. Of this total, state agencies control about 52 percent, and Federal agencies control about 29 percent. Conservation areas that presently protect

  3. Freshwater aquatic plant biomass production in Florida

    Energy Technology Data Exchange (ETDEWEB)

    Reddy, K.R.; Sutton, D.L.; Bowes, G.

    1983-01-01

    About 8% (1.2 million ha) of the total surface area of Florida is occupied by freshwater. Many of these water bodies are eutrophic. Nutrients present in these water bodies can be potentially used to culture aquatic plants as a possible feedstock for methane production. This paper summarizes the results of known research findings on biomass production potential of freshwater aquatic plants in Florida and identifies key research needs to improve the quality and quantity of biomass yields. Among floating aquatic plants, biomass yield potential was in the order of water-hyacinth > water lettuce > pennywort > salvinia > duckweed > azolla. Pennywort, duckweed, and azolla appear to perform well during the cooler months compared to other aquatic plants. Among emergent plants, biomass yield potential was in the order of southern wild rice > cattails > soft rush > bulrush. Cultural techniques, nutrient management, and environmental factors influencing the biomass yields were discussed. 68 references.

  4. Antibiotics promote aggregation within aquatic bacterial communities

    Directory of Open Access Journals (Sweden)

    ManuelaCoci

    2014-07-01

    These results represent the first observation of co-aggregation as a successful strategy of AB resistance based on phenotype in aquatic bacterial communities, and can represent a fundamental step in the understanding of the effects of AB.

  5. Nitrous oxide emission by aquatic macrofauna

    Science.gov (United States)

    Stief, Peter; Poulsen, Morten; Nielsen, Lars Peter; Brix, Hans; Schramm, Andreas

    2009-01-01

    A large variety of aquatic animals was found to emit the potent greenhouse gas nitrous oxide when nitrate was present in the environment. The emission was ascribed to denitrification by ingested bacteria in the anoxic animal gut, and the exceptionally high N2O-to-N2 production ratio suggested delayed induction of the last step of denitrification. Filter- and deposit-feeding animal species showed the highest rates of nitrous oxide emission and predators the lowest, probably reflecting the different amounts of denitrifying bacteria in the diet. We estimate that nitrous oxide emission by aquatic animals is quantitatively important in nitrate-rich aquatic environments like freshwater, coastal marine, and deep-sea ecosystems. The contribution of this source to overall nitrous oxide emission from aquatic environments might further increase because of the projected increase of nitrate availability in tropical regions and the numeric dominance of filter- and deposit-feeders in eutrophic ecosystems. PMID:19255427

  6. Submerged Aquatic Vegetation (SAV) - Volusia County Seagrass

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — Aquatic vegetation in Volusia County. DEP SEA_GRASSES This polygon GIS data set represents a compilation of statewide seagrass data from various source agencies and...

  7. Nonindigenous Aquatic Species Database Marine Fishes

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Nonindigenous Aquatic Species Database (NAS) information resource is an established central repository for spatially referenced biogeographic accounts of...

  8. Monitoring degradation of oil sands constituents and foodweb dynamics in aquatic reclamation using stable isotopes

    Energy Technology Data Exchange (ETDEWEB)

    Farwell, A.J.; Butler, B.J.; Dixon, D.G. [Waterloo Univ., ON (Canada). Dept. of Biology; Mackinnon, M.D. [Syncrude Canada Ltd., Edmonton, AB (Canada)

    2003-07-01

    The process of extracting bitumen from the Athabasca oil sands deposits in northern Alberta generates large volumes of process-affected water with highly toxic constituents such as naphthenic acids. Napthenic acids can biodegrade and become less toxic in reclaimed aquatic systems. This study used stable isotopes to examine the cycling of oil sands constituents in aquatic systems. Benthic invertebrates were collected from test pits at Syncrude Canada Ltd. Dragonflies and damselflies showed trends in carbon 13 depletion and nitrogen 15 enrichment in pits with high levels of process-affected water. Chironomids and amphipods showed only nitrogen 15 enrichment. Carbon 13 depletion suggests invertebrate assimilation and incorporation of oil sands constituents through the microbial foodweb. It is important to define the isotope pathway of naphthenic acid degradation because naphthenic acids could represent a major source of carbon in reclaimed systems.

  9. The ocean sampling day consortium

    DEFF Research Database (Denmark)

    Kopf, Anna; Bicak, Mesude; Kottmann, Renzo;

    2015-01-01

    Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate...... the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our...

  10. Effect of Aquatic Immersion on Static Balance

    OpenAIRE

    Louder, Talin J.

    2013-01-01

    Objective To quantitatively assess measures of static balance and limits of stability (LOS) in an aquatic environment compared to on land. Methods Fifteen healthy, young adults (23 + or - 2 years) performed 90 s static balance trials on land and aquatic immersion at two different depths (greater trochanter, xiphoid process). Measures of 95% ellipse area and center of pressure (CoP) mean velocity were computed from the force data. Additionally, participants completed a visual analog scale (VAS...

  11. Human Exploitation of Aquatic Landscapes. Editorial

    OpenAIRE

    Ricardo Fernandes; John Meadows

    2014-01-01

    Aquatic landscapes such as rivers, lakes, and seas played an important role in past human behaviour, affecting modes of subsistence, patterns of mobility, access to material resources, and technological choices and their developments. The interaction with aquatic landscapes was also influential in the establishment of economic and social structures and in the formation of communal identities. The aim of this special themed issue of Internet Archaeology is to contribute to a better understandi...

  12. Noninvasive analysis of metabolic changes following nutrient input into diverse fish species, as investigated by metabolic and microbial profiling approaches

    Directory of Open Access Journals (Sweden)

    Taiga Asakura

    2014-10-01

    Full Text Available An NMR-based metabolomic approach in aquatic ecosystems is valuable for studying the environmental effects of pharmaceuticals and other chemicals on fish. This technique has also contributed to new information in numerous research areas, such as basic physiology and development, disease, and water pollution. We evaluated the microbial diversity in various fish species collected from Japan’s coastal waters using next-generation sequencing, followed by evaluation of the effects of feed type on co-metabolic modulations in fish-microbial symbiotic ecosystems in laboratory-scale experiments. Intestinal bacteria of fish in their natural environment were characterized (using 16S rRNA genes for trophic level using pyrosequencing and noninvasive sampling procedures developed to study the metabolism of intestinal symbiotic ecosystems in fish reared in their environment. Metabolites in feces were compared, and intestinal contents and feed were annotated based on HSQC and TOCSY using SpinAssign and network analysis. Feces were characterized by species and varied greatly depending on the feeding types. In addition, feces samples demonstrated a response to changes in the time series of feeding. The potential of this approach as a non-invasive inspection technique in aquaculture is suggested.

  13. Specimen Sample Preservation for Cell and Tissue Cultures

    Science.gov (United States)

    Meeker, Gabrielle; Ronzana, Karolyn; Schibner, Karen; Evans, Robert

    1996-01-01

    The era of the International Space Station with its longer duration missions will pose unique challenges to microgravity life sciences research. The Space Station Biological Research Project (SSBRP) is responsible for addressing these challenges and defining the science requirements necessary to conduct life science research on-board the International Space Station. Space Station will support a wide range of cell and tissue culture experiments for durations of 1 to 30 days. Space Shuttle flights to bring experimental samples back to Earth for analyses will only occur every 90 days. Therefore, samples may have to be retained for periods up to 60 days. This presents a new challenge in fresh specimen sample storage for cell biology. Fresh specimen samples are defined as samples that are preserved by means other than fixation and cryopreservation. The challenge of long-term storage of fresh specimen samples includes the need to suspend or inhibit proliferation and metabolism pending return to Earth-based laboratories. With this challenge being unique to space research, there have not been any ground based studies performed to address this issue. It was decided hy SSBRP that experiment support studies to address the following issues were needed: Fixative Solution Management; Media Storage Conditions; Fresh Specimen Sample Storage of Mammalian Cell/Tissue Cultures; Fresh Specimen Sample Storage of Plant Cell/Tissue Cultures; Fresh Specimen Sample Storage of Aquatic Cell/Tissue Cultures; and Fresh Specimen Sample Storage of Microbial Cell/Tissue Cultures. The objective of these studies was to derive a set of conditions and recommendations that can be used in a long duration microgravity environment such as Space Station that will permit extended storage of cell and tissue culture specimens in a state consistent with zero or minimal growth, while at the same time maintaining their stability and viability.

  14. Aquatic arsenic: phytoremediation using floating macrophytes.

    Science.gov (United States)

    Rahman, M Azizur; Hasegawa, H

    2011-04-01

    Phytoremediation, a plant based green technology, has received increasing attention after the discovery of hyperaccumulating plants which are able to accumulate, translocate, and concentrate high amount of certain toxic elements in their above-ground/harvestable parts. Phytoremediation includes several processes namely, phytoextraction, phytodegradation, rhizofiltration, phytostabilization and phytovolatilization. Both terrestrial and aquatic plants have been tested to remediate contaminated soils and waters, respectively. A number of aquatic plant species have been investigated for the remediation of toxic contaminants such as As, Zn, Cd, Cu, Pb, Cr, Hg, etc. Arsenic, one of the deadly toxic elements, is widely distributed in the aquatic systems as a result of mineral dissolution from volcanic or sedimentary rocks as well as from the dilution of geothermal waters. In addition, the agricultural and industrial effluent discharges are also considered for arsenic contamination in natural waters. Some aquatic plants have been reported to accumulate high level of arsenic from contaminated water. Water hyacinth (Eichhornia crassipes), duckweeds (Lemna gibba, Lemna minor, Spirodela polyrhiza), water spinach (Ipomoea aquatica), water ferns (Azolla caroliniana, Azolla filiculoides, and Azolla pinnata), water cabbage (Pistia stratiotes), hydrilla (Hydrilla verticillata) and watercress (Lepidium sativum) have been studied to investigate their arsenic uptake ability and mechanisms, and to evaluate their potential in phytoremediation technology. It has been suggested that the aquatic macrophytes would be potential for arsenic phytoremediation, and this paper reviews up to date knowledge on arsenic phytoremediation by common aquatic macrophytes. PMID:21435676

  15. Aquatic insect assemblages associated with subalpine stream segment types in relict glaciated headwaters

    Science.gov (United States)

    Kubo, Joshua S.; Torgersen, Christian E.; Bolton, Susan M.; Weekes, Anne A.; Gara, Robert I.

    2013-01-01

    1. Aquatic habitats and biotic assemblages in subalpine headwaters are sensitive to climate and human impacts. Understanding biotic responses to such perturbations and the contribution of high-elevation headwaters to riverine biodiversity requires the assessment of assemblage composition among habitat types. We compared aquatic insect assemblages among headwater stream segment types in relict glaciated subalpine basins in Mt. Rainier National Park, Washington, USA. 2. Aquatic insects were collected during summer and autumn in three headwater basins. In each basin, three different stream segment types were sampled: colluvial groundwater sources, alluvial lake inlets, and cascade-bedrock lake outlets. Ward's hierarchical cluster analysis revealed high β diversity in aquatic insect assemblages, and non-metric multidimensional scaling indicated that spatial and temporal patterns in assemblage composition differed among headwater stream segment types. Aquatic insect assemblages showed more fidelity to stream segment types than to individual basins, and the principal environmental variables associated with assemblage structure were temperature and substrate. 3. Indicator species analyses identified specific aquatic insects associated with each stream segment type. Several rare and potentially endemic aquatic insect taxa were present, including the recently described species, Lednia borealis (Baumann and Kondratieff). 4. Our results indicate that aquatic insect assemblages in relict glaciated subalpine headwaters were strongly differentiated among stream segment types. These results illustrate the contribution of headwaters to riverine biodiversity and emphasise the importance of these habitats for monitoring biotic responses to climate change. Monitoring biotic assemblages in high-elevation headwaters is needed to prevent the potential loss of unique and sensitive biota.

  16. In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity.

    Science.gov (United States)

    Steinert, Georg; Taylor, Michael W; Deines, Peter; Simister, Rachel L; de Voogd, Nicole J; Hoggard, Michael; Schupp, Peter J

    2016-01-01

    Sponges (phylum Porifera) are important members of almost all aquatic ecosystems, and are renowned for hosting often dense and diverse microbial communities. While the specificity of the sponge microbiota seems to be closely related to host phylogeny, the environmental factors that could shape differences within local sponge-specific communities remain less understood. On tropical coral reefs, sponge habitats can span from shallow areas to deeper, mesophotic sites. These habitats differ in terms of environmental factors such as light, temperature, and food availability, as well as anthropogenic impact. In order to study the host specificity and potential influence of varying habitats on the sponge microbiota within a local area, four tropical reef sponges, Rhabdastrella globostellata, Callyspongia sp., Rhaphoxya sp., and Acanthella cavernosa, were collected from exposed shallow reef slopes and a deep reef drop-off. Based on 16S rRNA gene pyrosequencing profiles, beta diversity analyses revealed that each sponge species possessed a specific microbiota that was significantly different to those of the other species and exhibited attributes that are characteristic of high- and/or low-microbial-abundance sponges. These findings emphasize the influence of host identity on the associated microbiota. Dominant sponge- and seawater-associated bacterial phyla were Chloroflexi, Cyanobacteria, and Proteobacteria. Comparison of individual sponge taxa and seawater samples between shallow and deep reef sites revealed no significant variation in alpha diversity estimates, while differences in microbial beta diversity (variation in community composition) were significant for Callyspongia sp. sponges and seawater samples. Overall, the sponge-associated microbiota is significantly shaped by host identity across all samples, while the effect of habitat differentiation seems to be less predominant in tropical reef sponges. PMID:27114882

  17. Acoustically enriching, large-depth aquatic sampler.

    Science.gov (United States)

    Jonsson, Jonas; Ogden, Sam; Johansson, Linda; Hjort, Klas; Thornell, Greger

    2012-05-01

    In marine biology, it is useful to collect water samples when exploring the distribution and diversity of microbial communities in underwater environments. In order to provide, e.g., a miniaturized submersible explorer with the capability of collecting microorganisms, a compact sample enrichment system has been developed. The sampler is 30 mm long, 15 mm wide, and just a few millimetres thick. Integrated in a multilayer steel, polyimide and glass construction is a microfluidic channel with piezoelectric transducers, where microorganism and particle samples are collected and enriched, using acoustic radiation forces for gentle and labelless trapping. High-pressure, latchable valves, using paraffin as the actuation material, at each end of the microfluidic channel keep the collected sample pristine. A funnel structure raised above the surface of the device directs water into the microfluidic channel as the vehicle propels itself or when there is a flow across its hull. The valves proved leak proof to a pressure of 2.1 MPa for 19 hours and momentary pressures of 12.5 MPa, corresponding to an ocean depth of more than 1200 metres. By reactivating the latching mechanism, small leakages through the valves could be remedied, which could thus increase the leak-less operational time. Fluorescent particles, 1.9 μm in diameter, were successfully trapped in the microfluidic channel at flow rates up to 15 μl min(-1), corresponding to an 18.5 cm s(-1) external flow rate of the sampler. In addition, liquid-suspended GFP-marked yeast cells were successfully trapped. PMID:22422039

  18. Metabolism of mineral-sorbed organic matter and microbial lifestyles in fluvial ecosystems

    Science.gov (United States)

    Hunter, William Ross; Niederdorfer, Robert; Gernand, Anna; Veuger, Bart; Prommer, Judith; Mooshammer, Maria; Wanek, Wolfgang; Battin, Tom J.

    2016-02-01

    In fluvial ecosystems mineral erosion, carbon (C), and nitrogen (N) fluxes are linked via organomineral complexation, where dissolved organic molecules bind to mineral surfaces. Biofilms and suspended aggregates represent major aquatic microbial lifestyles whose relative importance changes predictably through fluvial networks. We tested how organomineral sorption affects aquatic microbial metabolism, using organomineral particles containing a mix of 13C, 15N-labeled amino acids. We traced 13C and 15N retention within biofilm and suspended aggregate biomass and its mineralization. Organomineral complexation restricted C and N retention within biofilms and aggregates and also their mineralization. This reduced the efficiency with which biofilms mineralize C and N by 30% and 6%. By contrast, organominerals reduced the C and N mineralization efficiency of suspended aggregates by 41% and 93%. Our findings show how organomineral complexation affects microbial C:N stoichiometry, potentially altering the biogeochemical fate of C and N within fluvial ecosystems.

  19. Natural atmospheric microbial conditions in a typical suburban area.

    OpenAIRE

    Jones, B. L.; Cookson, J T

    1983-01-01

    Ambient outdoor concentrations and size distributions of airborne microbial particles were measured approximately weekly for 2 years in a Washington, D.C., suburban area. The study objective was to characterize microbial air quality in the vicinity of a proposed sewage sludge composting facility. During the study, 379 samples were taken at 17 stations, using Andersen microbial samplers. Concentration ranges (in viable particles per cubic meter) were as follows: airborne mesophilic fungi, 0 to...

  20. Identification of microbial and proteomic biomarkers in early childhood caries

    OpenAIRE

    Thomas C. Hart; Corby, Patricia M.; Milos Hauskrecht; Ok Hee Ryu; Richard Pelikan; Michal Valko; Oliveira, Maria B.; Hoehn, Gerald T.; Bretz, Walter A.

    2011-01-01

    The purpose of this study was to provide a univariate and multivariate analysis of genomic microbial data and salivary mass-spectrometry proteomic profiles for dental caries outcomes. In order to determine potential useful biomarkers for dental caries, a multivariate classification analysis was employed to build predictive models capable of classifying microbial and salivary sample profiles with generalization performance. We used high-throughput methodologies including multiplexed microbial ...

  1. Microbial fuel cells

    International Nuclear Information System (INIS)

    Microbial fuel cells (MFC) are a promising technology for sustainable production of alternative energy and waste treatment. A microbial fuel cell transformation chemical energy in the chemical bonds in organic compounds to electrical energy through catalytic reactions of microorganisms under anaerobic conditions. It has been known for many years that it is possible to generate electricity directly by using bacteria to break down organic substrates. Key words: microbial fuel cells (MFC), biosensor, wastewater treatment

  2. New aquatic sites of the fungus Sommerstorffia spinosa

    Directory of Open Access Journals (Sweden)

    Bazyli Czeczuga

    2014-08-01

    Full Text Available When studying zoosporic fungi in the waters of northeastern Poland tbe authors found new sites of a rare fungus - Sommerstorffia spinosa Arnaudow. Its growth was observed in water samples collected from limnologically different reservoirs, from the spring Jaroszówka, the oligotrophic type (Lake Białe, through mesotrophic (Lake Wigry to the polytrophic type (pond Fosa with high content of hydrogen sulphide under ice cover. This fungus was also found in the river Biała, which flowing through Białystok gets polluted by municipal wastes. Moreover, the successive stages of S. spinosa development in the aquatic environment are described.

  3. Strategies for Field Sampling When Large Sample Sizes are Required

    Science.gov (United States)

    Estimates of prevalence or incidence of infection with a pathogen endemic in a fish population can be valuable information for development and evaluation of aquatic animal health management strategies. However, hundreds of unbiased samples may be required in order to accurately estimate these parame...

  4. Aquatic macroinvertebrates and water quality in Sandia Canyon

    International Nuclear Information System (INIS)

    In 1990, field studies of water quality and stream macroinvertebrate communities were initiated in Sandia Canyon at Los Alamos National Laboratory. The studies were designed to establish baseline data and to determine the effects of routine discharges of industrial and sanitary waste. Water quality measurements were taken and aquatic macroinvertebrates sampled at three permanent stations within the canyon. Two of the three sample stations are located where the stream regularly receives industrial and sanitary waste effluents. These stations exhibited a low diversity of macroinvertebrates and slightly degraded water quality. The last sample station, located approximately 0.4 km (0.25 mi) downstream from the nearest wastewater outfall, appears to be in a zone of recovery where water quality parameters more closely resemble those found in natural streams in the Los Alamos area. A large increase in macroinvertebrate diversity was also observed at the third station. These results indicate that effluents discharged into Sandia Canyon have a marked effect on water quality and aquatic macroinvertebrate communities

  5. Photodegradation behaviour of estriol: An insight on natural aquatic organic matter influence.

    Science.gov (United States)

    Oliveira, Cindy; Lima, Diana L D; Silva, Carla Patrícia; Otero, Marta; Esteves, Valdemar I

    2016-09-01

    Estriol (E3) is one of the steroidal estrogens ubiquitously found in the aquatic environment, photodegradation being an important pathway for the elimination of such endocrine disrupting compounds. However, it is important to understand how environmentally important components present in aquatic matrices, such as organic matter, may affect their photodegradation. The main objective of this work was to investigate the photodegradation of E3 in water, under simulated solar radiation, as well as the effect of humic substances (HS - humic acids (HA), fulvic acids (FA) and XAD-4 fraction) in E3 photodegradation. Moreover, the photodegradation behaviour of E3 when present in different environmental aquatic matrices (fresh, estuarine and waste water samples) was also assessed. Results showed a completely different E3 degradation rate depending on the aquatic matrix. In ultrapure water the half-life obtained was about 50 h, while in presence of HS it varied between 5 and 10 h. Then, half-life times between 1.6 and 9.5 h were determined in environmental samples, in which it was observed that the matrix composition contributed up to 97% for the overall E3 photodegradation. Therefore, E3 photodegradation in the considered aquatic matrices was mostly caused by photosensitizing reactions (indirect photodegradation). PMID:27341158

  6. A sugar biomarker proxy for assessing terrestrial versus aquatic sedimentary input

    Science.gov (United States)

    Hepp, Johannes; Rabus, Max; Laforsch, Christian; Anhäuser, Tobias; Glaser, Bruno; Zech, Michael

    2016-04-01

    Lake sediments are valuable, often continuous and potentially high resolution archives for studying past climate changes. Thereby, one of the crucial questions is often whether the origin of the organic matter in lake sediments is allochthonous (terrestrial) or autochthonous (aquatic). Here we present patterns of neutral sugars of various plants and algae species to answer the question whether the deoxyhexoses (fucose, rhamnose) to pentoses (arabinose, xylose) ratio can serve as a proxy for aquatic versus terrestrial sedimentary lake input, respectively. Our sugar pattern results show that the fucose + rhamnose content plotted against arabinose and xylose in a ternary diagram can be used to distinguish between algae and other (namely aquatic plants, emergent plant, and terrestrial plants) sugar sources. This finding is confirmed by a compilation with sugar data from the literature. Mosses plot within the range of algae. Although the (fucose + rhamnose)/(arabinose + xylose) ratio yields some overlapping between algae and soil/litter samples, we recommend this ratio, particularly when applied within a multiproxy approach, as promising proxy for distinguishing between aquatic vs. terrestrial organic matter in sedimentary archives. Regarding the sugar concentrations of the investigated samples, emergent plants show the highest values as well as the highest variability. Mosses, aquatic plants and algae yield lower sugar concentrations comparable to those of terrestrial plants.

  7. Sediment Interfaces: Ecotones on a Microbial Scale

    Science.gov (United States)

    Borchers, M. R.; Colwell, F. S.; D'Angelo, G.; Thurber, A. R.; Graw, M. F.

    2015-12-01

    Ecotones - transitions between different biomes - often support greater faunal diversity than the adjacent ecological systems. For subseafloor microorganisms, defined geological and chemical gradients have been shown to affect population sizes and community structure, but the role that sediment interfaces play is still unclear. Here, we test the hypothesis that zones of transition between two distinct sediment types increase microbial diversity and change community composition. Concurrently, we explore those factors that drive deep-subsurface microbial community structure (e.g., depth, interstitial water chemistry, methane concentrations, clay content). Samples from IODP Expedition 349 - South China Sea Tectonics - had interfaces of either ash/clay or turbidite/clay boundaries sampled , DNA extracted, and the 16S rRNA gene analyzed on an Illumina MiSeq platform. Initial analyses reveal that microbial communities in sediment samples are distinct from communities in drilling fluid, indicating that contamination is unlikely. In four of the eight complete interfaces currently analyzed we found an increase in diversity (based on the chao1 index), in certain cases doubling the diversity of the adjacent rock types. The pattern was not uniform across all interfaces. While some posit that ecotones provide a mixing of the two adjacent communities, we were surprised to find an abundance (mean = 392 OTUs) of unique microbial taxa within the ecotone itself when compared to adjacent sediment (mean=282 unique OTUs). Thus while diversity was not uniformly increased in ecotones, the interface led to divergent microbial communities that were not simply mixtures of those adjacent. We will discuss the ability of abiotic factors in explaining the among ecotone variance that we observed. Our investigation helps to characterize the factors that drive microbial community structure of the subseafloor while highlighting the need to focus on habitat heterogeneity at a scale pertinent to

  8. Insights into microbial communities involved in mercury methylation in the San Francisco Bay estuary

    Science.gov (United States)

    Machak, C.; Francis, C. A.

    2013-12-01

    San Francisco Bay (SFB) estuary is the largest estuary on the western coast of the United States, draining a watershed covering more than one third of the state of California. Mercury (Hg) contamination in SFB, as a result of gold and mercury mining in the Coast Range and Sierra Nevada region, has been observed for at least 150 years. Additional sources of Hg contamination to SFB come from active oil refineries, manufacturing, and wastewater treatment plants in the area. Concentrations of methylmercury in the sediment at the time of sample collection for the present study ranged from 0.011-3.88 μg/kg (dry weight). At some sites, the concentration exceeds wetland toxicity limits, posing a threat to the health of the ecosystem and potentially endangering humans that use the estuary for food and recreation. This study attempts to understand the factors that control the transformation of Hg to methylmercury by microorganisms in aquatic sediments, where the majority of Hg methylation is known to occur. Under anoxic conditions, some sulfate- and iron-reducing bacteria have the capacity to transform Hg into methylmercury. To better understand the microbial communities involved in Hg methylation, an extensive library of 16S rRNA sequences was generated (via Illumina sequencing) from sediment samples at 20 sites throughout the SFB estuary. In addition to genomic data, we have access to a massive database of geochemical measurements made by the SFB Regional Monitoring Program at the sampling locations. These measurements show that our sediment samples have varying methylmercury concentrations and span gradients in porewater sulfate and Fe(III), which are the two known alternative electron acceptors for mercury-methylating anaerobic bacteria. The sampling sites also span gradients in other geochemical factors known to influence microbial community composition (and potentially Hg mercury methylation), such as available organic carbon, pH, and salinity. We will present the

  9. Metals in Mediterranean aquatic species

    International Nuclear Information System (INIS)

    Highlights: • Study on metals in Mediterranean fish and fishery products. • Data collected for several contaminants in wild and farmed species of commercial interest. • Samples compliance with EU regulatory limits. • Identification of Mediterranean Sea areas showing background concentrations. • An interpretation of the chemical pollution issue of Marine Framework Strategy Directive. - Abstract: Metals such as arsenic (As), cadmium (Cd), copper (Cu), chromium (Cr), nickel (Ni), lead (Pb), vanadium (V), have been determined in species of Mediterranean marine organisms collected from areas supposed to be at background contamination levels. The Inductively Coupled Plasma Mass Spectrometry (ICP-MS) approach was adopted for the determination of all the metals. Arsenic, Cd and Pb determined in the 42 samples, do not exceed the pertinent maximum level except a sample of hake. In wild fish, the concentration range for Cr, Ni, V and Cu was, respectively: 0.07–0.09, 87.6–124, 0.022–0.075 and 0.79–1.74 μg/g fresh weight (fw). The farmed fish samples show concentration levels below the wild fish ones, except for Cr which range at the same levels. Cadmium and Pb show a high sample number under the quantification limit. The elements do not bio-magnify among the species considered and appear to show low variations in relation to organisms’ position in the food chain and at sampling sites

  10. Which Microbial Communities Are Present? Sequence-Based Metagenomics

    Science.gov (United States)

    Caffrey, Sean M.

    The use of metagenomic methods that directly sequence environmental samples has revealed the extraordinary microbial diversity missed by traditional culture-based methodologies. Therefore, to develop a complete and representative model of an environment's microbial community and activities, metagenomic analysis is an essential tool.

  11. Biofilms: A microbial home

    OpenAIRE

    Chandki, Rita; Banthia, Priyank; Banthia, Ruchi

    2011-01-01

    Microbial biofilms are mainly implicated in etiopathogenesis of caries and periodontal disease. Owing to its properties, these pose great challenges. Continuous and regular disruption of these biofilms is imperative for prevention and management of oral diseases. This essay provides a detailed insight into properties, mechanisms of etiopathogenesis, detection and removal of these microbial biofilms.

  12. MICROBIAL FUEL CELL

    DEFF Research Database (Denmark)

    2008-01-01

    A novel microbial fuel cell construction for the generation of electrical energy. The microbial fuel cell comprises: (i) an anode electrode, (ii) a cathode chamber, said cathode chamber comprising an in let through which an influent enters the cathode chamber, an outlet through which an effluent...

  13. Personalized microbial network inference via co-regularized spectral clustering.

    Science.gov (United States)

    Imangaliyev, Sultan; Keijser, Bart; Crielaard, Wim; Tsivtsivadze, Evgeni

    2015-07-15

    We use Human Microbiome Project (HMP) cohort (Peterson et al., 2009) to infer personalized oral microbial networks of healthy individuals. To determine clustering of individuals with similar microbial profiles, co-regularized spectral clustering algorithm is applied to the dataset. For each cluster we discovered, we compute co-occurrence relationships among the microbial species that determine microbial network per cluster of individuals. The results of our study suggest that there are several differences in microbial interactions on personalized network level in healthy oral samples acquired from various niches. Based on the results of co-regularized spectral clustering we discover two groups of individuals with different topology of their microbial interaction network. The results of microbial network inference suggest that niche-wise interactions are different in these two groups. Our study shows that healthy individuals have different microbial clusters according to their oral microbiota. Such personalized microbial networks open a better understanding of the microbial ecology of healthy oral cavities and new possibilities for future targeted medication. The scripts written in scientific Python and in Matlab, which were used for network visualization, are provided for download on the website http://learning-machines.com/. PMID:25842007

  14. Nutrition, illness, and injury in aquatic sports.

    Science.gov (United States)

    Pyne, David B; Verhagen, Evert A; Mountjoy, Margo

    2014-08-01

    In this review, we outline key principles for prevention of injury and illness in aquatic sports, detail the epidemiology of injury and illness in aquatic athletes at major international competitions and in training, and examine the relevant scientific evidence on nutrients for reducing the risk of illness and injury. Aquatic athletes are encouraged to consume a well-planned diet with sufficient calories, macronutrients (particularly carbohydrate and protein), and micronutrients (particularly iron, zinc, and vitamins A, D, E, B6, and B12) to maintain health and performance. Ingesting carbohydrate via sports drinks, gels, or sports foods during prolonged training sessions is beneficial in maintaining energy availability. Studies of foods or supplements containing plant polyphenols and selected strains of probiotic species are promising, but further research is required. In terms of injury, intake of vitamin D, protein, and total caloric intake, in combination with treatment and resistance training, promotes recovery back to full health and training. PMID:24937101

  15. Microbial Signatures of Cadaver Gravesoil During Decomposition.

    Science.gov (United States)

    Finley, Sheree J; Pechal, Jennifer L; Benbow, M Eric; Robertson, B K; Javan, Gulnaz T

    2016-04-01

    Genomic studies have estimated there are approximately 10(3)-10(6) bacterial species per gram of soil. The microbial species found in soil associated with decomposing human remains (gravesoil) have been investigated and recognized as potential molecular determinants for estimates of time since death. The nascent era of high-throughput amplicon sequencing of the conserved 16S ribosomal RNA (rRNA) gene region of gravesoil microbes is allowing research to expand beyond more subjective empirical methods used in forensic microbiology. The goal of the present study was to evaluate microbial communities and identify taxonomic signatures associated with the gravesoil human cadavers. Using 16S rRNA gene amplicon-based sequencing, soil microbial communities were surveyed from 18 cadavers placed on the surface or buried that were allowed to decompose over a range of decomposition time periods (3-303 days). Surface soil microbial communities showed a decreasing trend in taxon richness, diversity, and evenness over decomposition, while buried cadaver-soil microbial communities demonstrated increasing taxon richness, consistent diversity, and decreasing evenness. The results show that ubiquitous Proteobacteria was confirmed as the most abundant phylum in all gravesoil samples. Surface cadaver-soil communities demonstrated a decrease in Acidobacteria and an increase in Firmicutes relative abundance over decomposition, while buried soil communities were consistent in their community composition throughout decomposition. Better understanding of microbial community structure and its shifts over time may be important for advancing general knowledge of decomposition soil ecology and its potential use during forensic investigations. PMID:26748499

  16. Assessment of gamma emitting radionuclides in the aquatic ecosystem of Kakrapar Atomic Power Station and evaluation of radiological doses to aquatic plants

    International Nuclear Information System (INIS)

    During operation and maintenance of Pressurised Heavy Water Reactors (PHWRs) at Kakrapar Atomic Power Station (KAPS), low level radioactive liquid waste is generated and released to the aquatic ecosystem (Moticher lake). The silt and aquatic weed (Hydrilla verticillata) samples collected from different locations in Moticher lake were analysed for 137Cs, 134Cs, 65Zn, 60Co, 54Mn and 40K during 2007-2008. A wide variation in activity levels of 137Cs, 134Cs, 65Zn, 60Co, 54Mn and 40K in silt and weed samples were observed in aquatic system of KAPS. The activity buildup in the silt is confined to a small area in the Moticher lake. The activity levels were found to be insignificant at 1 km away from discharge point (upstream and downstream). An attempt was made to evaluate the radiological dose to aquatic weed (Hydrilla verticillata), which was found to be well within the dose limit prescribed by US DOE. The total radiological dose due to the naturally occurring radionuclide (40K) is comparatively higher than that of other reactor released gamma emitting radionuclides. (author)

  17. Abiotic variability among different aquatic systems of the central Amazon floodplain during drought and flood events.

    Science.gov (United States)

    Affonso, A G; Queiroz, H L; Novo, E M L M

    2015-11-01

    This paper examines water properties from lakes, (depression lakes, sensu Junk et al., 2012), channels (scroll lakes with high connectivity, sensu Junk et al., 2012) and paleo-channels (scroll lakes with low connectivity-sensu Junk et al., 2012, locally called ressacas) located in Mamirauá Sustainable Development Reserve, in Central Amazon floodplain, Amazonas, Brazil. We analysed surface temperature, conductivity, pH, dissolved oxygen, turbidity, transparency, suspended inorganic and organic matter, chlorophyll-a, pheophytin, total nitrogen, total phosphorus, organic and inorganic carbon in 2009 high water phase, 2009 and 2010 low water phases. Multivariate statistical analyses of 24 aquatic systems (6 ressacas, 12 lakes and 6 channels, 142 samples) were applied to the variables in order to: 1) quantify differences among aquatic system types; 2) assess how those differences are affected in the different phases of the hydrological year. First, we analysed the entire set of variables to test for differences among phases of the hydrological year and types of aquatic systems using a PERMANOVA two-way crossed design. The results showed that the all measured limnological variables are distinct regarding both factors: types of aquatic systems and hydrological phases. In general, the magnitude and amplitude of all variables were higher in the low water phase than in the high water phase, except for water transparency in all aquatic system's types. PERMANOVA showed that the differences between aquatic system's types and hydrological phases of all variables were highly significant for both main factors (type and phase) and for the type x phase interaction. Limnological patterns of Amazon floodplain aquatic systems are highly dynamic, dependent on the surrounding environment, flood pulse, main river input and system type. These patterns show how undisturbed systems respond to natural variability in such a diverse environment, and how distinct are those aquatic systems

  18. Adaptive features of aquatic mammals' eye.

    Science.gov (United States)

    Mass, Alla M; Supin, Alexander Ya

    2007-06-01

    The eye of aquatic mammals demonstrates several adaptations to both underwater and aerial vision. This study offers a review of eye anatomy in four groups of aquatic animals: cetaceans (toothed and baleen whales), pinnipeds (seals, sea lions, and walruses), sirenians (manatees and dugongs), and sea otters. Eye anatomy and optics, retinal laminar morphology, and topography of ganglion cell distribution are discussed with particular reference to aquatic specializations for underwater versus aerial vision. Aquatic mammals display emmetropia (i.e., refraction of light to focus on the retina) while submerged, and most have mechanisms to achieve emmetropia above water to counter the resulting aerial myopia. As underwater vision necessitates adjusting to wide variations in luminosity, iris muscle contractions create species-specific pupil shapes that regulate the amount of light entering the pupil and, in pinnipeds, work in conjunction with a reflective optic tapetum. The retina of aquatic mammals is similar to that of nocturnal terrestrial mammals in containing mainly rod photoreceptors and a minor number of cones (however, residual color vision may take place). A characteristic feature of the cetacean and pinniped retina is the large size of ganglion cells separated by wide intercellular spaces. Studies of topographic distribution of ganglion cells in the retina of cetaceans revealed two areas of ganglion cell concentration (the best-vision areas) located in the temporal and nasal quadrants; pinnipeds, sirenians, and sea otters have only one such area. In general, the visual system of marine mammals demonstrates a high degree of development and several specific features associated with adaptation for vision in both the aquatic and aerial environments. PMID:17516421

  19. Modeled carbon respiration of microbial communities with explicit enzyme representation

    Science.gov (United States)

    Todd-Brown, K. E.; Allison, S. D.

    2009-12-01

    Most carbon cycling models do not represent microbial biomass and extracellular enzymes directly. We previously introduced a partial differential equation and agent-based model to investigate dynamics of microbial decomposers and carbon respiration. In this model we explored the respiration rate of a microbial community comprised of producers (microbes that secrete foraging enzymes) and cheaters (microbes that do not secrete enzymes but benefit from them) The inclusion of cheaters reduced the producer population, which in turn reduced the amount of enzyme in the system and slowed the conversion of substrate into product. This limited the overall biomass and reduced the amount of CO2 released by the system. Here we introduce an analogous ordinary differential equation model for well-mixed systems, such as chemostats and aquatic or marine environments. We tested this model against experimental data from communities of Pseudomonas bacteria that produce protease enzymes. We found that the new model matches the experimental data and hypothesize that diffusion would reduce the expected respiration rate in diffusion-limited systems, such as soils or agar plates,. Our models suggest that enzyme producers grow more slowly due to the added energetic burden of enzyme production. Furthermore, mixed cheater/producer communities are less efficient at mineralizing carbon substrates than pure producer populations. Diffusion of enzymes through the system plays a key role in reducing the overall respiration rate. These results have potential implications for soil and aquatic carbon models, suggesting that both microbial biomass and community composition should be explicitly represented. If community composition is ignored, then there could be a systematic overestimation of the carbon respired from the system. Our results emphasize that mechanistic modeling of microbial communities can improve prediction of carbon cycling under varying environmental conditions.

  20. Potential toxicity of pesticides measured in midwestern streams to aquatic organisms

    Science.gov (United States)

    Battaglin, W.; Fairchild, J.

    2002-01-01

    Society is becoming increasingly aware of the value of healthy aquatic ecosystems as well as the effects that man's activities have on those ecosystems. In recent years, many urban and industrial sources of contamination have been reduced or eliminated. The agricultural community also has worked towards reducing off-site movement of agricultural chemicals, but their use in farming is still growing. A small fraction, estimated at pesticides applied to crops are lost from fields and enter nearby streams during rainfall events. In many cases aquatic organisms are exposed to mixtures of chemicals, which may lead to greater non-target risk than that predicted based on traditional risk assessments for single chemicals. We evaluated the potential toxicity of environmental mixtures of 5 classes of pesticides using concentrations from water samples collected from ???50 sites on midwestern streams during late spring or early summer runoff events in 1989 and 1998. Toxicity index values are calculated as the concentration of the compound in the sample divided by the EC50 or LC50 of an aquatic organism. These index values are summed within a pesticide class and for all classes to determine additive pesticide class and total pesticide toxicity indices. Toxicity index values greater than 1.0 indicate probable toxicity of a class of pesticides measured in a water sample to aquatic organisms. Results indicate that some samples had probable toxicity to duckweed and green algae, but few are suspected of having significant toxicity to bluegill sunfish or chorus frogs.

  1. Effects of linuron on a rooted aquatic macrophyte in sediment-dosed test systems

    NARCIS (Netherlands)

    Buresova, H.; Crum, S.J.H.; Belgers, J.D.M.; Adriaanse, P.I.; Arts, G.H.P.

    2013-01-01

    Effects of linuron on the sediment-rooted aquatic macrophyte Myriophyllum spicatum L. were studied in sediment-dosed test systems following a proposed guideline with extended test duration. Sediment, pore water, overlying water and macrophyte shoots were sampled weekly for chemical analyses. Linuron

  2. Effects of modifications of aquatic ecosystems

    International Nuclear Information System (INIS)

    Studies under this program historically have been concerned with the effects of a variety of stress factors on aquatic populations and communities. Current research was focused principally on ionizing radiation, and includes studies on the interaction of acute radiation and temperature on fish, the in situ measurement of radiation exposure in an aquatic environment, and the uptake and retention of tritium in a simulated pond community. In response to the expanded responsibilities of the recently formed Energy Research and Development Administration in dealing with all forms of energy related problems, this program will be redirected in the coming year to nonnuclear energy research

  3. Aquatic ape theory and fossil hominids.

    Science.gov (United States)

    Verhaegen, M J

    1991-06-01

    While most older palaeo-anthropological studies emphasise the similarities of the fossil hominids with modern man, recent studies often stress the unique and the apelike features of the australopithecine dentitions, skulls and postcranial bones. It is worth reconsidering the features of Australopithecus, Homo erectus and Homo neanderthalensis in the light of the so-called Aquatic Ape Theory (AAT) of Hardy and Morgan, and to compare the skeletal parts of our fossil relatives with those of (semi)aquatic animals. Possible convergences are observed with proboscis monkeys, beavers, sea-otters, hippopotamuses, seals, sea-lions, walruses, sea-cows, whales, dolphins, porpoises, penguins and crocodiles. PMID:1909768

  4. Radioactive contamination of aquatic media and organisms

    International Nuclear Information System (INIS)

    After a brief account of the radioactive wastes produced by peaceful or military uses of Atomic Industry, the author first describes a series of observations carried out 'in the field' on the extent of contamination in aquatic organisms with respect to that of the medium. The experimental studies are then analysed, with reference both to the radioisotope metabolism and to the factors and types of contamination of aquatic organisms by wastes from atomic industry. A precise experimental project is presented at the end of the paper, including almost 300 references. (author)

  5. Hydrogen production from microbial strains

    Science.gov (United States)

    Harwood, Caroline S; Rey, Federico E

    2012-09-18

    The present invention is directed to a method of screening microbe strains capable of generating hydrogen. This method involves inoculating one or more microbes in a sample containing cell culture medium to form an inoculated culture medium. The inoculated culture medium is then incubated under hydrogen producing conditions. Once incubating causes the inoculated culture medium to produce hydrogen, microbes in the culture medium are identified as candidate microbe strains capable of generating hydrogen. Methods of producing hydrogen using one or more of the microbial strains identified as well as the hydrogen producing strains themselves are also disclosed.

  6. Effects of Misgurnus anguillicaudatus and Cipangopaludina cathayensis on Pollutant Removal and Microbial Community in Constructed Wetlands

    Directory of Open Access Journals (Sweden)

    Pengfei Li

    2015-05-01

    Full Text Available Aquatic animals play an important role in the energy flow and matter cycling in the wetland ecosystem. However, little is known about their effects on pollutant removal performance and microbial community in constructed wetlands. This work presents an initial attempt to investigate the effects of Misgurnus anguillicaudatus (loach and Cipangopaludina cathayensis (snail on nutrient removal performance and microbial community of constructed wetlands (CWs. Compared with a control group, CW microcosms with aquatic animals exhibited better pollutant removal performance. The removal efficiencies of total phosphorus (TP in the loach group were 13.1% higher than in the control group, and snails increased the ammonium removal most effectively. Moreover, the concentration of total organic carbon (TOC and TP in sediment significantly reduced with the addition of loaches and snails (p < 0.05, whereas the concentration of total nitrogen (TN showed an obvious increase with the addition of loaches. High-throughput sequencing showed a microbial community structure change. Loaches and snails in wetlands changed the microbial diversity, especially in the Proteobacteria and denitrifying community. Results suggested that benthic aquatic animals might play an important role in CW ecosystems.

  7. Pesticide toxicity index for freshwater aquatic organisms, 2nd edition

    Science.gov (United States)

    Munn, Mark D.; Gilliom, Robert J.; Moran, Patrick W.; Nowell, Lisa H.

    2006-01-01

    The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program is designed to assess current water-quality conditions, changes in water quality over time, and the effects of natural and human factors on water quality for the Nation's streams and ground-water resources. For streams, one of the most difficult parts of the assessment is to link chemical conditions to effects on aquatic biota, particularly for pesticides, which tend to occur in streams as complex mixtures with strong seasonal patterns. A Pesticide Toxicity Index (PTI) was developed that combines pesticide exposure of aquatic biota (measured concentrations of pesticides in stream water) with acute toxicity estimates (standard endpoints from laboratory bioassays) to produce a single index value for a sample or site. The development of the PTI was limited to pesticide compounds routinely measured in NAWQA studies and to toxicity data readily available from existing databases. Qualifying toxicity data were found for one or more types of test organisms for 124 of the 185 pesticide compounds measured in NAWQA samples, but with a wide range of available bioassays per compound (1 to 232). In the databases examined, there were a total of 3,669 bioassays for the 124 compounds, including 398 48-hour EC50 values (concentration at which 50 percent of test organisms exhibit a sublethal response) for freshwater cladocerans, 699 96-hour LC50 values (concentration lethal to 50 percent of test organisms) for freshwater benthic invertebrates, and 2,572 96-hour LC50 values for freshwater fish. The PTI for a particular sample is the sum of toxicity quotients (measured concentration divided by the median toxicity concentration from bioassays) for each detected pesticide, and thus, is based on the concentration addition model of pesticide toxicity. The PTI can be calculated for specific groups of pesticides and for specific taxonomic groups. Although the PTI does not determine whether water in a sample is

  8. Novel laboratory approaches to multi-purpose aquatic bioregenerative closed-loop food production systems.

    Science.gov (United States)

    Blum, V; Andriske, M; Kreuzberg, K; Paassen, U; Schreibman, M P; Voeste, D

    1998-01-01

    Based on the construction principle of the Closed Equilibrated Biological Aquatic System (C.E.B.A.S.) two novel combined animal-plant production systems were developed in laboratory scale the first of which is dedicated to mid-term operation in closed state up to two years. In principle both consist of the "classic" C.E.B.A.S. subcomponents: animal tank (Zoological Component), plant cultivators (Botanical Component), ammonia converting bacteria filter (Microbial Component) and data acquisition/control unit (Electronical Component). The innovative approach in the first system is the utilization of minimally three aquatic plant cultivators for different species. In this one the animal tank has a volume of about 160 liters and is constructed as an "endless-way system" surrounding a central unit containing the heat exchanger and the bacteria filter with volumes of about 1.5 liters each. A suspension plant cultivator (1 liter) for the edible duckweed Wolffia arrhiza is externally connected. The second plant cultivator is a meandric microalgal bioreactor for filamentous green algae. The third plant growth facility is a chamber with about 2.5 liters volume for cultivation of the "traditional" C.E.B.A.S. plant species, the rootless buoyant Ceratophyllum demersum. Both latter units are illuminated with 9 W fluorescent lamps. In the current experiment the animal tank contains the live-bearing teleost fish Xiphophorus helleri and the small pulmonate water snail Biomphalaria glabrata because their physiological adaptation to the closed system conditions is well known from many previous C.E.B.A.S. experiments. The water temperature is maintained at 25 degrees C and the oxygen level is regulated between 4 and 7 mg/l by switching on and off the plant cultivator illuminations according to a suitable pattern thus utilizing solely the oxygen produced by photosynthesis. The animals and the microorganisms of filter and biofilm provide the plants with a sufficient amount of carbon

  9. Ecotoxic heavy metals transformation by bacteria and fungi in aquatic ecosystem.

    Science.gov (United States)

    Chaturvedi, Amiy Dutt; Pal, Dharm; Penta, Santhosh; Kumar, Awanish

    2015-10-01

    Water is the most important and vital molecule of our planet and covers 75% of earth surface. But it is getting polluted due to high industrial growth. The heavy metals produced by industrial activities are recurrently added to it and considered as dangerous pollutants. Increasing concentration of toxic heavy metals (Pb(2+), Cd(2+), Hg(2+), Ni(2+)) in water is a severe threat for human. Heavy metal contaminated water is highly carcinogenic and poisonous at even relatively low concentrations. When they discharged in water bodies, they dissolve in the water and are distributed in the food chain. Bacteria and fungi are efficient microbes that frequently transform heavy metals and remove toxicity. The application of bacteria and fungi may offer cost benefit in water treatment plants for heavy metal transformation and directly related to public health and environmental safety issues. The heavy metals transformation rate in water is also dependent on the enzymatic capability of microorganisms. By transforming toxic heavy metals microbes sustain aquatic and terrestrial life. Therefore the application of microbiological biomass for heavy metal transformation and removal from aquatic ecosystem is highly significant and striking. This paper reviews the microbial transformation of heavy metal, microbe metal interaction and different approaches for microbial heavy metal remediation from water bodies. PMID:26250544

  10. In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity

    NARCIS (Netherlands)

    Steinert, Georg; Taylor, Michael W.; Deines, Peter; Simister, Rachel L.; Voogd, De Nicole J.; Hoggard, Michael; Schupp, Peter J.

    2016-01-01

    Sponges (phylum Porifera) are important members of almost all aquatic ecosystems, and are renowned for hosting often dense and diverse microbial communities. While the specificity of the sponge microbiota seems to be closely related to host phylogeny, the environmental factors that could shape di

  11. Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates

    Directory of Open Access Journals (Sweden)

    JohnEyresHobbie

    2013-11-01

    Full Text Available Understanding microbial transformations in soils is important for predicting future carbon sequestration and nutrient cycling. This review questions some methods of assessing one key microbial process, the uptake of labile organic compounds. First, soil microbes have a starving-survival life style of dormancy, arrested activity, and low activity. Yet they are very abundant and remain poised to completely take up all substrates that become available. As a result, dilution assays with the addition of labeled substrates cannot be used. When labeled substrates are transformed into 14CO2, the first part of the biphasic release follows metabolic rules and is not affected by the environment. As a consequence, when identical amounts of isotopically substrates are added to soils from different climate zones, the same percentage of the substrate is respired and the same half-life of the respired 14CO2 from the labeled substrate is estimated. Second, when soils are sampled by a variety of methods from taking 10 cm diameter cores to millimeter-scale dialysis chambers, amino acids (and other organic compounds appear to be released by the severing of fine roots and mycorrhizal networks as well as from pressing or centrifuging treatments. As a result of disturbance as well as of natural root release, concentrations of individual amino acids of ~10 µM are measured. This contrasts with concentrations of a few nM found in aquatic systems and raises questions about possible differences in the bacterial strategy between aquatic and soil ecosystems. The small size of the hyphae (2-10 μm diameter and of the fine roots (0.2 to 2 mm diameter, make it very difficult to sample any volume of soil without introducing artifacts. Third, when micromolar amounts of labeled amino acids are added to soil, some of the isotope enters plant roots. This may be an artifact of the high µM concentrations applied.

  12. Turnover of eroded soil organic carbon after deposition in terrestrial and aquatic environments

    DEFF Research Database (Denmark)

    Kirkels, Frédérique; Cammeraat, Erik; Kalbitz, Karsten;

    The fate of eroded soil organic carbon (SOC) after deposition is a large uncertainty in assessing the impact of soil erosion on C budgets. Globally, large amounts of SOC are transported by erosion and a substantial part is transferred into adjacent inland waters, linking terrestrial and aquatic C...... cycling. However, the net effect on C fluxes between soils, inland waters and atmosphere remains uncertain. In this study, we determined SOC turnover in terrestrial and aquatic environments and indentified its major controls. A European gradient of agricultural sites was sampled, spanning a wide range...... (soils vs. inland waters) play a crucial role in determining C turnover. Erosion measures preventing deposition in aquatic environments could therefore be an important carbon saving strategy. We envisage that these quantitative results can be used to parameterize biogeochemical models and contribute to...

  13. Fuzzy model for risk assessment of persistent organic pollutants in aquatic ecosystems.

    Science.gov (United States)

    Seguí, X; Pujolasus, E; Betrò, S; Agueda, A; Casal, J; Ocampo-Duque, W; Rudolph, I; Barra, R; Páez, M; Barón, E; Eljarrat, E; Barceló, D; Darbra, R M

    2013-07-01

    We developed a model for evaluating the environmental risk of persistent organic pollutants (POPs) to aquatic organisms. The model is based on fuzzy theory and uses information provided by international experts through a questionnaire. It has been tested in two case studies for a particular type of POPs: brominated flame retardants (BFRs). The first case study is related to the EU-funded AQUATERRA project, with sampling campaigns carried out in two Ebro tributaries in Spain (the Cinca and Vero Rivers). The second one, named the BROMACUA project, assessed different aquatic ecosystems in Chile (San Vicente Bay) and Colombia (Santa Marta Marsh). In both projects, the BFRs under study were polybrominated diphenyl ethers (PBDEs) and hexabromocyclododecane (HBCD). However, the model can be extrapolated to other POPs and to different aquatic ecosystems to provide useful results for decision-makers. PMID:23524177

  14. Statistical Verification of Folk Medicinal Potentiality of Wild Dicot Aquatic Plants in Jordan

    Directory of Open Access Journals (Sweden)

    S. Al-Qura'n

    2005-01-01

    Full Text Available This study describes a floristic study of Jordan with its environs. The study was carried out during 2001-2003 and 287 aquatic dicot samples were collected and photographed in the field. After the identification of the specimens, the total wild aquatic dicot species have been determined as 87 species belonging to 59 genera and 33 plant families were presented in investigated Jordan sites. The endemism rate of the investigated area is 26.4% for the 23 species. The largest 3 families are Labiatae (9 aquatic species, Compositae (7 species and Salicaceae (7 species. The largest genera are Mentha (6 species, Polygonum (5 species and Salix (5 species. Similarities between the taxa and those of neighbouring regions performed were compared in this study. 63 aquatic dicot species (73.3% have therapeutic similarities with neighbouring countries, while the 24 remaining species (26.7% haven't such therapeutic similarity. Emerged species (living with close contact with water body were the most recorded, while amphibious, submerged and floating species were the least. The folk medicinal importance value of aquatic species recorded was identified according to Friedman et al. [1]. Twenty one species (24% have ROP values higher than 50 and therefore; have the highest popularity in folk medicinal potentiality. Twenty six species (29.9% have therapeutic effects informed by less than three informants and therefore; excluded from further consideration. Forty species (46.1% have ROP values less than 50 and therefore; considered nonpopular medicinal plants.

  15. Why Care About Aquatic Insects: Uses, Benefits, and Services

    Science.gov (United States)

    Mayflies and other aquatic insects are common subjects of ecological research, and environmental monitoring and assessment. However, their important role in protecting and restoring aquatic ecosystems is often challenged, because their benefits and services to humans are not obv...

  16. Malheur NWR: Initial Survey Instructions for Lacustrine Submergent Aquatic Vegetation

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Submergent aquatic vegetation (SAV) provides the foundation for wildlife use in aquatic systems. Sago pondweed is of particular significance in providing protein by...

  17. Chapter 5. Assessing the Aquatic Hazards of Veterinary Medicines

    Science.gov (United States)

    In recent years, there has been increasing awareness of the widespread distribution of low concentrations of veterinary medicine products and other pharmaceuticals in the aquatic environment. While aquatic hazard for a select group of veterinary medicines has received previous s...

  18. Expansion of Microbial Forensics.

    Science.gov (United States)

    Schmedes, Sarah E; Sajantila, Antti; Budowle, Bruce

    2016-08-01

    Microbial forensics has been defined as the discipline of applying scientific methods to the analysis of evidence related to bioterrorism, biocrimes, hoaxes, or the accidental release of a biological agent or toxin for attribution purposes. Over the past 15 years, technology, particularly massively parallel sequencing, and bioinformatics advances now allow the characterization of microorganisms for a variety of human forensic applications, such as human identification, body fluid characterization, postmortem interval estimation, and biocrimes involving tracking of infectious agents. Thus, microbial forensics should be more broadly described as the discipline of applying scientific methods to the analysis of microbial evidence in criminal and civil cases for investigative purposes. PMID:26912746

  19. Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes

    OpenAIRE

    Liang, Yuting; Zhao, Huihui; Deng, Ye; Zhou, Jizhong; Li, Guanghe; Sun, Bo

    2016-01-01

    With knowledge on microbial composition and diversity, investigation of within-community interactions is a further step to elucidate microbial ecological functions, such as the biodegradation of hazardous contaminants. In this work, microbial functional molecular ecological networks were studied in both contaminated and uncontaminated soils to determine the possible influences of oil contamination on microbial interactions and potential functions. Soil samples were obtained from an oil-explor...

  20. Physical speciation of thorium in aquatic subsurface environment

    International Nuclear Information System (INIS)

    During this work laboratory simulated experiments were conducted to study the physical speciation of thorium by using ultrafiltration technique. Thorium has only one stable oxidation state i.e. IV, under all redox conditions in natural waters and therefore, its speciation is dominated by its interaction with various fraction of aquatic humic substances(AHS). Samples of water were collected from oligotropic environment having DOC in the range of 60 - 70 ppm. Th(IV) ions are extremely particle reactive having Kd value of the order of 106, hence to avoid adsorption on suspended particulate matter, spiking of the solution with Th(NO3)4 was carried out in ground water samples after filtering through 0.22 μm pore size using suction filtration. Experimental results show that 70% of the spiked Th is in association with low molecular weight colloids i.e 500 NMWL followed by < 500 NMWL. (author)

  1. Microbial Source Tracking as a Tool for TMDL Development, Little Blue River in Independence, Missouri

    Science.gov (United States)

    Christensen, Eric D.; Bushon, Rebecca N.; Brady, Amie M.G.

    2013-01-01

    The Little Blue River in Jackson County, Missouri has been listed by the Missouri Department of Natural Resources as impaired by bacteria for the protection of aquatic life and contact recreation from urban point and nonpoint sources. The Clean Water Act requires that a total maximum daily load (TMDL) for Escherichia coli (E. coli) be developed. Over a 5-year period, 108 base-flow, 87 stormflow, 48 fecal source, and 12 sewage influent samples were collected and analyzed for E. coli and Bacteroides general and host-associated microbial source tracking (MST) genetic markers. Less than half of the main-stem base-flow samples exceeded the E. coli state standard, whereas, all of the stormflow samples exceeded the standard during the recreation season (April through October). Both E. coli and MST markers were detected more frequently and at higher concentrations in stormflow samples. Only 14 percent of samples with E. coli detections greater than the Missouri state standard of 206 colonies per 100 milliliters had the human-associated Bacteroides marker as the only identified marker; therefore, Little Blue River TMDL development may require a broader scope beyond the municipal separate storm sewer system if bacteria sources are to be identified and addressed. Fecal samples showed a greater specificity with the human-associated marker than the dog- or ruminant-associated Bacteroides markers; however, false positives were at least one order of magnitude lower than true positives. MST data may be a useful tool for identifying probable sources of contamination and directing TMDL strategies.

  2. Aquatics Therapy and the Halliwick Concept

    Science.gov (United States)

    Skinner, Alison; Thomson, Ann

    2008-01-01

    Aquatic therapy is the use of the properties of water for the therapeutic benefit of people of all ages and abilities. This article illustrates how people with disabilities may maximize the benefits of activities in water, including individual and group work and swimming. The overall aim is to encourage family activity and social interaction. The…

  3. SUBMERGED AQUATIC VEGETATION GARDENING MX974861

    Science.gov (United States)

    The Submerged Aquatic Vegetation Gardening project will acquire the seed/seedlings of SAVs for planting, will create an SAV gardening guide; and will create SAV plots at volunteers waterfront properties. Volunteers will gather data on plant size and spacing. Water quality test ...

  4. Altitudinal distribution limits of aquatic macroinvertebrates

    DEFF Research Database (Denmark)

    Madsen, Philip B.; Morabowen, Andrés; Andino, Patricio;

    2015-01-01

    1. Temperature and oxygen are recognised as the main drivers of altitudinal limits of species distributions. However, the two factors are linked, and both decrease with altitude, why their effects are difficult to disentangle. 2. This was experimentally addressed using aquatic macroinvertebrates...

  5. Systems and Cycles: Learning about Aquatic Ecosystems

    Science.gov (United States)

    Hmelo-Silver, Cindy E.; Jordan, Rebecca; Eberbach, Catherine; Rugaber, Spencer; Goel, Ashok

    2011-01-01

    In this research, the authors present both the design and preliminary testing of a technology-intensive classroom intervention designed to support middle schools students' understanding of an aquatic ecosystem. The goals of their intervention are to help learners develop deep understanding of ecosystems and to use tools that make the relationships…

  6. Applicator Training Manual for: Aquatic Weed Control.

    Science.gov (United States)

    Herron, James W.

    The aquatic weeds discussed in this manual include algae, floating weeds, emersed weeds, and submerged weeds. Specific requirements for pesticide application are given for static water, limited flow, and moving water situations. Secondary effects of improper application rates and faulty application are described. Finally, techniques of limited…

  7. Nitrous oxide emission by aquatic macrofauna

    DEFF Research Database (Denmark)

    Stief, Peter; Poulsen, Morten; Nielsen, Lars Peter; Brix, Hans; Schramm, Andreas

    2009-01-01

      A large variety of aquatic animals was found to emit the potent greenhouse gas nitrous oxide when nitrate was present in the environment. The emission was ascribed to denitrification by ingested bacteria in the anoxic animal gut, and the exceptionally high N2O-to-N2 production ratio suggested d...

  8. Aquatic Habitats: Exploring Desktop Ponds. Teacher's Guide.

    Science.gov (United States)

    Barrett, Katharine; Willard, Carolyn

    This book, for grades 2-6, is designed to provide students with a highly motivating and unique opportunity to investigate an aquatic habitat. Students set up, observe, study, and reflect upon their own "desktop ponds." Accessible plants and small animals used in these activities include Elodea, Tubifex worms, snails, mosquito larvae, and fish.…

  9. Aquatic Pest Control. Sale Publication 4071.

    Science.gov (United States)

    Wamsley, Mary Ann, Ed.; Vermeire, Donna M., Ed.

    The information in this manual applies to control of aquatic pests in recreational waters, agricultural reservoirs, ornamental ponds, coastal bays, estuaries and channels, and drinking water reservoirs. Mechanical, cultural, biological, and chemical control methods are discussed. The majority of the material is devoted to weed control in static…

  10. Aquatic ecotoxicological indicators in life cycle assessment

    DEFF Research Database (Denmark)

    Pennington, David W.; Payet, Jerome; Hauschild, Michael Zwicky

    This paper compares available options for the aquatic ecotoxicological effect factor component in life cycle assessment (LCA). The effect factor is expressed here as the change in risk per unit change in cumulative exposure, ƒ´Effect/ƒ´Exposure. The comparison is restricted to approaches linked...

  11. Toxicokinetic modeling challenges for aquatic nanotoxicology

    Directory of Open Access Journals (Sweden)

    Wei-Yu eChen

    2016-01-01

    Full Text Available Nanotoxicity has become of increasing concern since the rapid development of metal nanoparticles (NPs. Aquatic nanotoxicity depends on crucial qualitative and quantitative properties of nanomaterials that induce adverse effects on subcellular, tissue, and organ level. The dose-response effects of size-dependent metal NPs, however, are not well investigated in aquatic organisms. In order to determine the uptake and elimination rate constants for metal NPs in the metabolically active/ detoxified pool of tissues, a one-compartmental toxicokinetic model can be applied when subcellular partitioning of metal NPs data would be available. The present review is an attempt to describe the nano-characteristics of toxicokinetics and subcellular partitioning on aquatic organisms with the help of the mechanistic modeling for NP size-dependent physiochemical properties and parameters. Physiologically-based pharmacokinetic (PBPK models can provide an effective tool to estimate the time course of NP accumulation in target organs and is useful in quantitative risk assessments. NP accumulation in fish should take into account different effects of different NP sizes to better understand tissue accumulative capacities and dynamics. The size-dependent NP partition coefficient is a crucial parameter that influences tissue accumulation levels in PBPK modeling. Further research is needed to construct the effective systems-level oriented toxicokinetic model that can provide a useful tool to develop quantitatively the robustly approximate relations that convey a better insight into the impacts of environmental metal NPs on subcellular and tissue/organ responses in aquatic organisms.

  12. Nano-plastics in the aquatic environment.

    Science.gov (United States)

    Mattsson, K; Hansson, L-A; Cedervall, T

    2015-10-01

    The amount of plastics released to the environment in modern days has increased substantially since the development of modern plastics in the early 1900s. As a result, concerns have been raised by the public about the impact of plastics on nature and on, specifically, aquatic wildlife. Lately, much attention has been paid to macro- and micro-sized plastics and their impact on aquatic organisms. However, micro-sized plastics degrade subsequently into nano-sizes whereas nano-sized particles may be released directly into nature. Such particles have a different impact on aquatic organisms than larger pieces of plastic due to their small size, high surface curvature, and large surface area. This review describes the possible sources of nano-sized plastic, its distribution and behavior in nature, the impact of nano-sized plastic on the well-being of aquatic organisms, and the difference of impact between nano- and micro-sized particles. We also identify research areas which urgently need more attention and suggest experimental methods to obtain useful data. PMID:26337600

  13. Effects of radiation on aquatic organisms

    International Nuclear Information System (INIS)

    With the onset of nuclear age, nuclear fuel cycle products, nuclear medicine techniques, disposal of radio active wastes on land or in water, fall out of testing nuclear weapons has contributed large amount of radio nuclides to the water bodies. Radio nuclides can imbalance aquatic ecosystem resulting in danger to natural life. The biological effects of radiation on aquatic life are mortality, pathophysiological, reproductive, developmental and genetic changes. A broad review of the results obtained about the aquatic organisms related to different phyla indicates that the lower or less developed or more primitive organisms are more resistant than the higher or more advanced, developed and complex organisms to ionizing radiation. The algae, protozoa are more resistant than the insects, crustaceans, molluscs and fishes. The changes in sensitivity between different stages of development have also been noted. A review of the results of exposing salmonoid gametes, eggs, fingerlings and adults to X-rays supports the concepts that radio sensitivity decreases with age. This paper presents a selective review on effects of radiation and radio nuclides on the aquatic life. It include uses and sources of radiation, effective quantity of radiation, lethal and sub lethal effect, effects on survival, growth, reproduction, behaviour, metabolism, carcinogenicity and mutagenicity. (author)

  14. Effects of Seven Fungicides on Non-Target Aquatic Fungi

    OpenAIRE

    Dijksterhuis, Jan; van Doorn, Tineke; Samson, Rob; Postma, Jaap

    2011-01-01

    Aquatic risk assessments for fungicides are carried out without information on their toxicity to non-target aquatic fungi. This might cause an underestimation of the toxic effects to the aquatic fungal community. This study focuses on the question whether recently derived concentrations limits for fungicides considered to protect populations of primary producers and (in)vertebrates also do protect the aquatic fungi. A panel of fungal species and Oomycetes was isolated and identified from unpo...

  15. Pesticides and Aquatic Animals: A Guide to Reducing Impacts on Aquatic Systems

    OpenAIRE

    Helfrich, Louis A.; Weigmann, Diana L.; Hipkins, Patricia A.; Stinson, Elizabeth R.

    2009-01-01

    Serves as a general guide for those who may use pesticides in or around natural wetlands, lakes, ponds, rivers, and streams by providing information about the toxicity and safe use of pesticides that have the potential to enter aquatic systems.

  16. CAM Photosynthesis in Submerged Aquatic Plants

    Science.gov (United States)

    Keeley, J.E.

    1998-01-01

    Crassulacean acid metabolism (CAM) is a CO2-concentrating mechanism selected in response to aridity in terrestrial habitats, and, in aquatic environments, to ambient limitations of carbon. Evidence is reviewed for its presence in five genera of aquatic vascular plants, including Isoe??tes, Sagittaria, Vallisneria, Crassula, and Littorella. Initially, aquatic CAM was considered by some to be an oxymoron, but some aquatic species have been studied in sufficient detail to say definitively that they possess CAM photosynthesis. CO2-concentrating mechanisms in photosynthetic organs require a barrier to leakage; e.g., terrestrial C4 plants have suberized bundle sheath cells and terrestrial CAM plants high stomatal resistance. In aquatic CAM plants the primary barrier to CO2 leakage is the extremely high diffusional resistance of water. This, coupled with the sink provided by extensive intercellular gas space, generates daytime CO2(Pi) comparable to terrestrial CAM plants. CAM contributes to the carbon budget by both net carbon gain and carbon recycling, and the magnitude of each is environmentally influenced. Aquatic CAM plants inhabit sites where photosynthesis is potentially limited by carbon. Many occupy moderately fertile shallow temporary pools that experience extreme diel fluctuations in carbon availability. CAM plants are able to take advantage of elevated nighttime CO2 levels in these habitats. This gives them a competitive advantage over non-CAM species that are carbon starved during the day and an advantage over species that expend energy in membrane transport of bicarbonate. Some aquatic CAM plants are distributed in highly infertile lakes, where extreme carbon limitation and light are important selective factors. Compilation of reports on diel changes in titratable acidity and malate show 69 out of 180 species have significant overnight accumulation, although evidence is presented discounting CAM in some. It is concluded that similar proportions of the aquatic

  17. Amylase activity of aquatic actinomycetes isolated from the sediments of mangrove forests in south of Iran

    Directory of Open Access Journals (Sweden)

    Farshid Kafilzadeh

    2015-01-01

    Full Text Available In this study amylase producing actinomycetes were isolated from the sediments of mangrove forests in the south of Iran and the rate of amylase activity was measured. The samples of sediments were collected from one hundred different places in mangrove forests of the south of Iran. Collected samples were diluted then they were purified on the starch (casein agar culture and Woodruff. After that they were examined in terms of amylase production on agar–starch culture. The activity of the produced amylase by the isolated aquatic actinomycetes was measured by dinitrosalicylic acid (DNS method. The results showed that aquatic actinomycetes were isolated from 86 per 100 places in spring (86% and from 61 per 100 places in summer (61%. The highest rates of producing enzyme were related to isolated samples in spring (62.97 U/ml. Biochemical and Bergey’s book tests showed that the most isolated aquatic actinomycetes belonged to Streptomyces genus. As regards this, it is economical and easy to isolate the aquatic actinomycetes which produce amylase that is used in different industries in Iran from the sediments of mangrove forests of the south of Iran. So the isolated strains in this study can be suitable candidates for amylase production after genetic manipulation.

  18. Is litter decomposition 'primed' by primary producer-release of labile carbon in terrestrial and aquatic experimental systems?

    Science.gov (United States)

    Soares, A. Margarida P. M.; Kritzberg, Emma S.; Rousk, Johannes

    2015-04-01

    It is possible that recalcitrant organic matter (ROM) can be 'activated' by inputs of labile organic matter (LOM) through the priming effect (PE). Investigating the PE is of major importance to fully understand the microbial use of ROM and its role on carbon (C) and nutrient cycling in both aquatic and terrestrial ecosystems. In aquatic ecosystems it is thought that the PE is triggered by periphytic algae release of LOM. Analogously, in terrestrial systems it is hypothesized that the LOM released in plant rhizospheres, or from the green crusts on the surface of agricultural soils, stimulate the activity and growth of ROM decomposers. Most previous studies on PE have utilised pulse additions of single substrates at high concentrations. However, to achieve an assessment of the true importance of the PE, it is important to simulate a realistic delivery of LOM. We investigated, in a series of 2-week laboratory experiments, how primary producer (PP)-release of LOM influence litter degradation in terrestrial and aquatic experimental systems. We used soil (terrestrial) and pond water (aquatic) microbial communities to which litter was added under light and dark conditions. In addition, glucose was added at PP delivery rates in dark treatments to test if the putative PE in light systems could be reproduced. We observed an initial peak of bacterial growth rate followed by an overall decrease over time with no treatment differences. In light treatments, periphytic algae growth and increased fungal production was stimulated when bacterial growth declined. In contrast, both fungal growth and algal production were negligible in dark treatments. This reveals a direct positive influence of photosynthesis on fungal growth. To investigate if PP LOM supplements, and the associated fungal growth, translate into a modulated litter decomposition, we are using stable isotopes to track the use of litter and algal-derived carbon by determining the δ13C in produced CO2. Fungi and bacteria

  19. Microbial processes in radioactive waste repository

    International Nuclear Information System (INIS)

    Microbial processes could potentially affect the performance of a radioactive waste disposal system and related factors that could have an influence on the mobility of radionuclides are outlined. Analytical methods, including sampling of water, rock and surface swabs from a potential disposal site, are described and the quantitative as well as qualitative experimental results obtained are given. Although the results contribute to an understanding of the impact of microbial processes on deep geological disposal of nuclear waste, there is not yet sufficient information for a model which will predict the consequences of these processes. (author)

  20. Microbial community transitions across the deep sediment-basement interface

    Science.gov (United States)

    Labonté, J.; Lever, M. A.; Orcutt, B.

    2015-12-01

    Previous studies of microbial abundance and geochemistry in deep marine sediments indicate a stimulation of microbial activity near the sediment-basement interface; yet, the extent to which microbial communities in bottom sediments and underlying crustal habitats interact is unclear. We conducted tag pyrosequencing on DNA extracted from a spectrum of deep sediment-basement samples to try to identify patterns in microbial community shifts across sediment-basement interfaces, focusing on samples from the subsurface of the Juan de Fuca Ridge flank (IODP Expedition 327). Our results demonstrate that sediment and the basaltic crust harbor microbial communities that are phylogenetically connected, but the eveness is characteristic of the environment. We will discuss the microbial community transitions that occur horizontally along fluid flow pathways and vertically across the sediment basement interface, as well as the possible implications regarding the controls of microbial community composition along deep sediment-basement interfaces in hydrothermal systems. We will also highlight efforts to overcome sample contamination in crustal subsurface samples.

  1. Microbial genomic taxonomy

    OpenAIRE

    Cristiane C Thompson; Chimetto, Luciane; Edwards, Robert A.; Swings, Jean; Stackebrandt, Erko; Thompson, Fabiano L

    2013-01-01

    A need for a genomic species definition is emerging from several independent studies worldwide. In this commentary paper, we discuss recent studies on the genomic taxonomy of diverse microbial groups and a unified species definition based on genomics. Accordingly, strains from the same microbial species share >95% Average Amino Acid Identity (AAI) and Average Nucleotide Identity (ANI), >95% identity based on multiple alignment genes,  70% in silico Genome-to-Genome Hybridization similarity (G...

  2. Diversity of Aquatic Actinomycetes in Lakes of the Middle Plateau, Yunnan, China

    OpenAIRE

    Jiang, C; Xu, L.

    1996-01-01

    A total of 749 sediment and water samples were collected from 12 lakes of the Middle Plateau of Yunnan from 1983 to 1993. The diversity and biological characteristics of the aquatic actinomycetes in these lakes were studied. Sixteen genera of actinomycetes were isolated from these samples. Micromonospores assumed a notable dominance (from 39 to 89%) in the actinomycete populations of these lake sediments. Streptomycetes were the second most abundant organisms. The diversity and counts of acti...

  3. Microbial Fuel Cells and Microbial Electrolyzers

    Energy Technology Data Exchange (ETDEWEB)

    Borole, Abhijeet P [ORNL

    2015-01-01

    Microbial Fuel Cells and microbial electrolyzers represent an upcoming technology for production of electricity and hydrogen using a hybrid electrocatalytic-biocatalytic approach. The combined catalytic efficiency of these processes has potential to make this technology highly efficient among the various renewable energy production alternatives. This field has attracted electrochemists, biologists and many other disciplines due to its potential to contribute to the energy, water and environment sectors. A brief introduction to the technology is provided followed by current research needs from a bioelectrochemical perspective. Insights into the operation and limitations of these systems achieved via cyclic voltammetry and impedance spectroscopy are discussed along with the power management needs to develop the application aspects. Besides energy production, other potential applications in bioenergy, bioelectronics, chemical production and remediation are also highlighted.

  4. Aquatic macroinvertebrates and water quality of Sandia Canyon, Los Alamos National Laboratory, 1995

    Energy Technology Data Exchange (ETDEWEB)

    Cross, S.; Nottelman, H.

    1997-01-01

    The Biology Team of ESH-20 (the Ecology Group) at Los Alamos National Laboratory (LANL) has collected samples from the stream within Sandia Canyon since the summer of 1990. These field studies measure water quality parameters and collect aquatic macroinvertebrates from sampling sites within the upper canyon stream. Reports by Bennett and Cross discuss previous aquatic studies in Sandia Canyon. This report updates and expands the previous findings. The Biology Team collected water quality data and aquatic macroinvertebrates monthly at three sampling stations within Sandia Canyon in 1995. The two upstream stations occur near a cattail (Typha latifolia) dominated marsh downstream from outfalls that discharge industrial and sanitary waste effluent into the stream, thereby maintaining year-round flow. The third station is approximately 1.5 miles downstream from the outfalls within a mixed conifer forest. All water chemistry parameters measured in Sandia Canyon during 1995 fell within acceptable State limits and scored in the {open_quotes}good{close_quotes} or {open_quotes}excellent{close_quotes} ranges when compared to an Environmental Quality Index. However, aquatic macroinvertebrates habitats have been degraded by widespread erosion, channelization, loss of wetlands due to deposition and stream lowering, scour, limited acceptable substrates, LANL releases and spills, and other stressors. Macroinvertebrate communities at all the stations had low diversities, low densities, and erratic numbers of individuals. These results indicate that although the stream possesses acceptable water chemistry, it has reduced biotic potential. The best developed aquatic community occurs at the sampling station with the best habitat and whose downstream location partially mitigates the effects of upstream impairments.

  5. Efficiency of aquatic macrophytes to treat Nile tilapia pond effluents

    Directory of Open Access Journals (Sweden)

    Henry-Silva Gustavo Gonzaga

    2006-01-01

    Full Text Available The effluents from fish farming can increase the quantity of suspended solids and promote the enrichment of nitrogen and phosphorus in aquatic ecosystems. In this context, the aim of this work was to evaluate the efficiency of three species of floating aquatic macrophytes (Eichhornia crassipes, Pistia stratiotes and Salvinia molesta to treat effluents from Nile tilapia culture ponds. The effluent originated from a 1,000-m² pond stocked with 2,000 male Nile tilapia Oreochromis niloticus. The treatment systems consisted of 12 experimental tanks, three tanks for each macrophyte species, and three control tanks (without plants. Water samples were collected from the: (i fish pond source water, (ii effluent from fish pond and (iii effluents from the treatment tanks. The following water variables were evaluated: turbidity, total and dissolved nitrogen, ammoniacal-N, nitrate-N, nitrite-N, total phosphorus and dissolved phosphorus. E. crassipes and P. stratiotes were more efficient in total phosphorus removal (82.0% and 83.3%, respectively and total nitrogen removal (46.1% and 43.9%, respectively than the S. molesta (72.1% total phosphorus and 42.7% total nitrogen and the control (50.3% total phosphorus and 22.8% total nitrogen, indicating that the treated effluents may be reused in the aquaculture activity.

  6. Microbial ecology of watery kimchi.

    Science.gov (United States)

    Kyung, Kyu Hang; Medina Pradas, Eduardo; Kim, Song Gun; Lee, Yong Jae; Kim, Kyong Ho; Choi, Jin Joo; Cho, Joo Hyong; Chung, Chang Ho; Barrangou, Rodolphe; Breidt, Frederick

    2015-05-01

    The biochemistry and microbial ecology of 2 similar types of watery (mul) kimchi, containing sliced and unsliced radish and vegetables (nabak and dongchimi, respectively), were investigated. Samples from kimchi were fermented at 4, 10, and 20 °C were analyzed by plating on differential and selective media, high-performance liquid chromatography, and high-throughput DNA sequencing of 16S rDNA. Nabak kimchi showed similar trends as dongchimi, with increasing lactic and acetic acids and decreasing pH for each temperature, but differences in microbiota were apparent. Interestingly, bacteria from the Proteobacterium phylum, including Enterobacteriaceae, decreased more rapidly during fermentation at 4 °C in nabak cabbage fermentations compared with dongchimi. Although changes for Proteobacterium and Enterobacteriaceae populations were similar during fermentation at 10 and 20 °C, the homolactic stage of fermentation did not develop for the 4 and 10 °C samples of both nabak and dongchimi during the experiment. These data show the differences in biochemistry and microbial ecology that can result from preparation method and fermentation conditions of the kimchi, which may impact safety (Enterobacteriaceae populations may include pathogenic bacteria) and quality (homolactic fermentation can be undesirable, if too much acid is produced) of the product. In addition, the data also illustrate the need for improved methods for identifying and differentiating closely related lactic acid bacteria species using high-throughput sequencing methods. PMID:25847522

  7. Microbial assessment of cabin air quality on commercial airliners

    Science.gov (United States)

    La Duc, Myron T.; Stuecker, Tara; Bearman, Gregory; Venkateswaran, Kasthuri

    2005-01-01

    The microbial burdens of 69 cabin air samples collected from commercial airliners were assessed via conventional culture-dependent, and molecular-based microbial enumeration assays. Cabin air samples from each of four separate flights aboard two different carriers were collected via air-impingement. Microbial enumeration techniques targeting DNA, ATP, and endotoxin were employed to estimate total microbial burden. The total viable microbial population ranged from 0 to 3.6 x10 4 cells per 100 liters of air, as assessed by the ATP-assay. When these same samples were plated on R2A minimal medium, anywhere from 2% to 80% of these viable populations were cultivable. Five of the 29 samples examined exhibited higher cultivable counts than ATP derived viable counts, perhaps a consequence of the dormant nature (and thus lower concentration of intracellular ATP) of cells inhabiting these air cabin samples. Ribosomal RNA gene sequence analysis showed these samples to consist of a moderately diverse group of bacteria, including human pathogens. Enumeration of ribosomal genes via quantitative-PCR indicated that population densities ranged from 5 x 10 1 ' to IO 7 cells per 100 liters of air. Each of the aforementioned strategies for assessing overall microbial burden has its strengths and weaknesses; this publication serves as a testament to the power of their use in concert.

  8. Impacts of microbial activity on the optical and copper-binding properties of leaf-litter leachate

    Directory of Open Access Journals (Sweden)

    ChadCuss

    2012-05-01

    Full Text Available Dissolved organic matter (DOM is a universal part of all aquatic systems that largely originates with the decay of plant and animal tissue. Its polyelectrolytic and heterogeneous characters make it an effective metal-complexing agent with highly diverse characteristics. Microbes utilize DOM as a source of nutrients and energy and their enzymatic activity may change its composition, thereby altering the bioavailability and toxicity of metals. This study investigated the impacts of microbial inoculation upon the optical and copper-binding properties of freshly-produced leaf-litter leachate over 168 hours. Copper speciation was measured using voltammetry, and using fluorescence quenching analysis of independent fluorophores determined using parallel factor analysis (PARAFAC. Four distinct components were detected. Thirty-five percent of total protein/polyphenol-like fluorescence was removed after 168-hr of exposure to riverine microbes. Using voltammetry, a 6-fold increase in copper-complexing (CC capacity (130 - 770 μmol Cu/g C was observed over the exposure period, while the conditional binding constant (log K decreased from 7.2 to 5.8. Binding parameters were significantly different for all four PARAFAC components and were generally in agreement with voltammetric results in the microbially-degraded samples, but they were significantly different in leachate. These results suggest that non-fluorescent moieties may exert a significant influence upon binding characteristics. Three of four binding sites corresponding to independent PARAFAC components, which had distinct characteristics in the leachate, retained significantly different log K values (p<0.05 after 168 hours of incubation, while their complexing capacities became similar. It was concluded that the microbial metabolization of maple leaf leachate has a significant impact upon DOM composition and its copper-binding characteristics.

  9. Accumulation and fluxes of mercury in terrestrial and aquatic food chains with special reference to Finland

    Directory of Open Access Journals (Sweden)

    Martin Lodenius

    2013-03-01

    Full Text Available Mercury is known for its biomagnification especially in aquatic food chains and for its toxic effects on different organisms including man. In Finland mercury has formerly been used in industry and agriculture and in addition many anthropogenic activities may increase the mercury levels in ecosystems. Phenyl mercury was widely used as slimicide in the pulp and paper industry in the 1950s and 1960s. In the chlor-alkali industry metallic mercury was used as catalyst at three plants. The most toxic form of mercury, methyl mercury, may be formed in soils, water, sediments and organisms. Many factors, including microbial activity, temperature, oxygen status etc., affect the methylation rate. In the lake ecosystem bioaccumulation of methyl mercury is very strong. In early 1980s there was a restriction of fishing concerning approximately 4000 km2 of lakes and sea areas because of mercury pollution. In aquatic systems we still find elevated concentrations near former emission sources. Long-range atmospheric transport and mechanical operations like ditching and water regulation may cause increased levels of mercury in the aquatic ecosystems. In the Finnish agriculture organic mercury compounds were used for seed dressing until 1992. Although the amounts used were substantial the concentrations in agricultural soils have remained rather low. In terrestrial food chains bioaccumulation is normally weak with low or moderate concentration at all ecosystem levels. Due to a weak uptake through roots terrestrial, vascular plants normally contain only small amounts of mercury. There is a bidirectional exchange of mercury between vegetation and atmosphere. Contrary to vascular plants, there is a very wide range of concentrations in fungi. Mercury may pose a threat to human health especially when accumulated in aquatic food chains.

  10. Production cycles in aquatic microcosms

    Energy Technology Data Exchange (ETDEWEB)

    Jassby, A.; Dudzik, M.; Rees, J.; Lapan, E.; Levy, D.; Harte, J.

    1977-02-08

    Four 700-liter cylindrical containers were filled with demineralized water, enriched with nutrients, and inoculated with 3.5-liter lakewater samples. The microcosms were maintained at a temperature of 18/sup 0/C under a 12:12 L:D cycle for 6 months and several manipulations of their trophic structure were carried out, including addition of snails (Physa sp.), mosquitofish (Gambusia affinis), and catfish (Placostomas placostomas). Temporal variation of the phytoplankton resembled the bimodal patterns of certain natural systems. Further analysis demonstrated a close analogy with the predator-prey oscillations of temperate marine waters: an initial bloom is terminated by zooplankton grazing; the resulting low phytoplankton levels lead to gradual starvation of the zooplankton; and a second bloom follows the final dieoff of zooplankton. Both decreasing the concentration of initial nutrients and stocking the microcosms with Gambusia decreases the time between the spring and fall blooms. The problem of heavy periphyton growth in microcosms was not solved with the introduction of either Physa or Placostomas. Possible solutions to this and to other problems peculiar to microcosm research are discussed, and modifications are suggested for increasing the ability of microcosms to simulate natural systems.

  11. Biodegradability and aquatic toxicity of quaternary ammonium-based gemini surfactants: Effect of the spacer on their ecological properties.

    Science.gov (United States)

    Garcia, M Teresa; Kaczerewska, Olga; Ribosa, Isabel; Brycki, Bogumił; Materna, Paulina; Drgas, Małgorzata

    2016-07-01

    Aerobic biodegradability and aquatic toxicity of five types of quaternary ammonium-based gemini surfactants have been examined. The effect of the spacer structure and the head group polarity on the ecological properties of a series of dimeric dodecyl ammonium surfactants has been investigated. Standard tests for ready biodegradability assessment (OECD 310) were conducted for C12 alkyl chain gemini surfactants containing oxygen, nitrogen or a benzene ring in the spacer linkage and/or a hydroxyethyl group attached to the nitrogen atom of the head groups. According to the results obtained, the gemini surfactants examined cannot be considered as readily biodegradable compounds. The negligible biotransformation of the gemini surfactants under the standard biodegradation test conditions was found to be due to their toxic effects on the microbial population responsible for aerobic biodegradation. Aquatic toxicity of gemini surfactants was evaluated against Daphnia magna. The acute toxicity values to Daphnia magna, IC50 at 48 h exposure, ranged from 0.6 to 1 mg/L. On the basis of these values, the gemini surfactants tested should be classified as toxic or very toxic to the aquatic environment. However, the dimeric quaternary ammonium-based surfactants examined result to be less toxic than their corresponding monomeric analogs. Nevertheless the aquatic toxicity of these gemini surfactants can be reduced by increasing the molecule hydrophilicity by adding a heteroatom to the spacer or a hydroxyethyl group to the polar head groups. PMID:27045632

  12. Contribution of microbial carbon to soil fractions: significance of diverse microbial group biochemistry

    Science.gov (United States)

    Throckmorton, H.; Bird, J. A.; Dane, L.; Firestone, M. K.; Horwath, W. R.

    2011-12-01

    The importance of diverse microbial groups to soil C maintenance is still a matter of debate. This study follows the turnover of 13C labeled nonliving residues from diverse microbial groups into soil physical fractions in situ in a temperate forest in California (CA) and a tropical forest in Puerto Rico (PR), during 5 sampling points per site- over a 3 and 2 year period, respectively. Microbial groups include fungi, actinomycetes, Gm(+) bacteria, and Gm(-) bacteria, isolated from CA and PR soils to obtain temperate and tropical isolates composited of 3-4 species per group. The selected density fractionation approach isolated: a "light fraction" (LF), non-mineral aggregate "occluded fraction" (OF), and a "mineral bound fraction" (MF). Pyrolysis gas chromatography mass spectrometry (Py-GC-MS) was employed to characterize microbial group isolates, whole soils, and fractions. Microbial isolates contained unique biochemical fingerprints: temperate and tropical fungi and tropical Gm(-) were characterized by a low abundance of phenol, benzene, and N-compounds compared with other microbial group isolates. Py-GC-MS revealed compositional differences among soil fractions at both sites, likely attributed to differences in the decomposition stage and C source material (ie. plant vs. microbial). For both sites, benzene and N-compounds were greatest in the MF; lignin and phenol compounds were greatest in the LF; and lipids were greatest in the OF. The trend for polysaccharides differed between sites, with the greatest concentration in the CA OF; and for PR with the lowest concentration in the OF, and similar concentrations in the LF and MF. SOM chemistry was most similar between sites in the LF, compared with the OF and MF, suggesting that differences in SOM chemistry between sites may be more attributed to differential decomposition processes than unique litter quality inputs. A substantial portion of microbial C moved from the LF into the OF, and the MF by the first sampling

  13. RESAMA: A Network for Monitoring Health and Husbandry Practices in Aquatic Research Facilities.

    Science.gov (United States)

    Legendre, Laurent; Guillet, Brigitte; Leguay, Emmanuel; Meunier, Emmanuel; Labrut, Sophie; Keck, Nicolas; Bardotti, Massimiliano; Michelet, Lorraine; Sohm, Frédéric

    2016-07-01

    Health monitoring is a crucial aspect of the management of any research animal house. RESAMA is a network strong of 60 academic and private partners acting in France since the end of 2012. The network aims to increase awareness of animal caretakers and researchers on health management issues in facilities holding aquatic model species (zebrafish, Xenopus, medaka, Mexican tetra). To do so, each partner research facility will be visited at least once. The visiting team is composed at least of one veterinarian and one zootechnician specialized in aquatic species. The visit results in a health-monitoring assessment of the facility, which includes a sampling for histo-pathological, bacteriological, and molecular pathogen detection. During the visit, rearing practices are also reviewed through an interview of animal caretakers. However, the present report essentially focuses on the health-monitoring aspect. The ultimate goal of the project is to provide a network-wide picture of health issues in aquatic facilities. Performed in parallel, the rearing practice assessment will ultimately help to establish rational relationship between handling practices and animal health in aquatic facilities. The study is still in progress. Here, we describe the results to be drawn from an analysis of the 23 facilities that had been visited so far. We sampled 720 fish and 127 amphibians and performed a little less than 1400 individual tests. PMID:27192449

  14. Aquatic macroinvertebrates and water quality of Sandia Canyon, Los Alamos National Laboratory, November 1993--October 1994

    Energy Technology Data Exchange (ETDEWEB)

    Cross, S.

    1995-08-01

    The Ecological Studies Team (EST) of ESH-20 at Los Alamos National Laboratory (LANL) has collected samples from the stream within Sandia Canyon since the summer of 1990. These field studies gather water quality measurements and collect aquatic macroinvertebrates from permanent sampling sites. Reports by Bennett (1994) and Cross (1994) discuss previous EST aquatic studies in Sandia Canyon. This report updates and expands those findings. EST collected water quality data and aquatic macroinvertebrates at five permanent stations within the canyon from November 1993 through October 1994. The two upstream stations are located below outfalls that discharge industrial and sanitary waste effluent into the stream, thereby maintaining year-round flow. Some water quality parameters are different at the first three stations from those expected of natural streams in the area, indicating degraded water quality due to effluent discharges. The aquatic habitat at the upper stations has also been degraded by sedimentation and channelization. The macroinvertebrate communities at these stations are characterized by low diversities and unstable communities. In contrast, the two downstream stations appear to be in a zone of recovery, where water quality parameters more closely resemble those found in natural streams of the area. The two lower stations have increased macroinvertebrate diversity and stable communities, further indications of downstream water quality improvement.

  15. Microbial Forensics: A Scientific Assessment

    Energy Technology Data Exchange (ETDEWEB)

    Keim, Paul

    2003-02-17

    Microorganisms have been used as weapons in criminal acts, most recently highlighted by the terrorist attack using anthrax in the fall of 2001. Although such ''biocrimes'' are few compared with other crimes, these acts raise questions about the ability to provide forensic evidence for criminal prosecution that can be used to identify the source of the microorganisms used as a weapon and, more importantly, the perpetrator of the crime. Microbiologists traditionally investigate the sources of microorganisms in epidemiological investigations, but rarely have been asked to assist in criminal investigations. A colloquium was convened by the American Academy of Microbiology in Burlington, Vermont, on June 7-9, 2002, in which 25 interdisciplinary, expert scientists representing evolutionary microbiology, ecology, genomics, genetics, bioinformatics, forensics, chemistry, and clinical microbiology, deliberated on issues in microbial forensics. The colloquium's purpose was to consider issues relating to microbial forensics, which included a detailed identification of a microorganism used in a bioattack and analysis of such a microorganism and related materials to identify its forensically meaningful source--the perpetrators of the bioattack. The colloquium examined the application of microbial forensics to assist in resolving biocrimes with a focus on what research and education are needed to facilitate the use of microbial forensics in criminal investigations and the subsequent prosecution of biocrimes, including acts of bioterrorism. First responders must consider forensic issues, such as proper collection of samples to allow for optimal laboratory testing, along with maintaining a chain of custody that will support eventual prosecution. Because a biocrime may not be immediately apparent, a linkage must be made between routine diagnosis, epidemiological investigation, and criminal investigation. There is a need for establishing standard operating

  16. Aquatic macroinvertebrates of the lower Missouri River

    Science.gov (United States)

    Poulton, Barry C.

    2010-01-01

    The U.S. Geological Survey (USGS) Columbia Environmental Research Center (CERC), in cooperation with the U.S. Environmental Protection Agency (USEPA), the U.S. Fish & Wildlife Service (USFWS), and the Missouri Department of Natural Resources (MDNR), has been conducting research on the aquatic macroinvertebrates of the lower Missouri River since the mid-1990s. This research was initiated in response to the need for comprehensive characterization of biological communities inhabiting aquatic habitats in large river systems that have historically been poorly studied. The USGS Status and Trends of Biological Resources Program provided partial funding for pilot studies that began in 1993 when the CERC was part of the USFWS. The purpose of this fact sheet is to provide stakeholders, scientists, management, and the general public with a basic summary of results from studies conducted by the CERC since that time period.

  17. Medical Care of the Aquatics Athlete.

    Science.gov (United States)

    Nichols, Andrew W

    2015-01-01

    Competitive swimmers are affected by several musculoskeletal and medical complaints that are unique to the sport. 'Swimmer's shoulder,' the most common overuse injury, is usually caused by some combination of impingement, rotator cuff tendinopathy, scapular dyskinesis, and instability. The condition may be treated with training modifications, stroke error correction, and strengthening exercises targeting the rotator cuff, scapular stabilizers, and core. Implementation of prevention programs to reduce the prevalence of shoulder pathology is crucial. Knee pain usually results from the breaststroke kick in swimmers, and the 'egg beater' kick in water polo players and synchronized swimmers. Lumbar back pain also is common in aquatics athletes. Among the medical conditions of particular importance in swimmers are exercise-induced bronchoconstriction, respiratory illnesses, and ear problems. Participants in other aquatics sports (water polo, diving, synchronized swimming, and open water swimming) may experience medical ailments specific to the sport. PMID:26359841

  18. Nitrous Oxide Emission by Aquatic Macrofauna

    DEFF Research Database (Denmark)

    Stief, Peter; Nielsen, Lars Peter; Schramm, Andreas

    Many macrofauna species co-ingest large quantities of microorganisms some of which survive the gut passage. Denitrifying bacteria, in particular, become metabolically induced by anoxic conditions, nitrate, and labile organic compounds in the gut of invertebrates. A striking consequence of the short......, respectively. Aside from these case studies, we screened more than 20 macrofauna species in various aquatic habitats for nitrous oxide production. Filter- and deposit-feeders that ingest large quantities of microorganisms were the most important emitters of nitrous oxide. In contrast, predatory species that do...... not ingest large quantities of microorganisms produced insignificant amounts of nitrous oxide. With increasing eutrophication, filter- and deposit-feeders often become the dominant feeding guilds of benthic communities. Thus, with increasing nitrate pollution, aquatic macrofauna has the potential to...

  19. [Aquatic animals of medical importance in Brazil].

    Science.gov (United States)

    Haddad Junior, Vidal

    2003-01-01

    The injuries caused by venomous and poisonous aquatic animals may provoke important morbidity in the victim. The cnidarians (jellyfishes, especially cubomedusas and Portuguese-Man-of-War) caused nearly 25% of 236 accidents by marine animals, while sea urchins were responsible for about 50% and catfish, stingrays and scorpionfish nearly 25%). In freshwater, stingrays and catfish cause injuries with a very similar mechanism to the poisoning and the effects of the toxins of marine species. In a series of about 200 injuries observed among freshwater fishermen, nearly 40% were caused by freshwater catfish, 5% freshwater stingrays and 55% by traumatogenic fish, such as piranhas and traíras. The author presents the aquatic animals that cause injuries to humans in Brazil, the clinical aspects of the envenoming and the first measures for the control of the severe pain observed mainly in the accidents caused by cnidarians and venomous fishes. PMID:14576874

  20. Highly pathogenic influenza A(H5N1 virus survival in complex artificial aquatic biotopes.

    Directory of Open Access Journals (Sweden)

    Viseth Srey Horm

    Full Text Available BACKGROUND: Very little is known regarding the persistence of Highly Pathogenic Avian Influenza (HPAI H5N1 viruses in aquatic environments in tropical countries, although environmental materials have been suggested to play a role as reservoirs and sources of transmission for H5N1 viruses. METHODOLOGY/PRINCIPAL FINDINGS: The survival of HPAI H5N1 viruses in experimental aquatic biotopes (water, mud, aquatic flora and fauna relevant to field conditions in Cambodia was investigated. Artificial aquatic biotopes, including simple ones containing only mud and water, and complex biotopes involving the presence of aquatic flora and fauna, were set up. They were experimentally contaminated with H5N1 virus. The persistence of HPAI H5N1 virus (local avian and human isolates was determined by virus isolation in embryonated chicken eggs and by real-time reverse-polymerase chain reaction. Persistence of infectious virus did not exceed 4 days, and was only identified in rain water. No infectious virus particles were detected in pond and lake water or mud even when high inoculum doses were used. However, viral RNA persisted up to 20 days in rain water and 7 days in pond or lake water. Viral RNA was also detected in mud samples, up to 14 days post-contamination in several cases. Infectious virus and viral RNA was detected in few cases in the aquatic fauna and flora, especially in bivalves and labyrinth fish, although these organisms seemed to be mostly passive carriers of the virus rather than host allowing virus replication. CONCLUSIONS/SIGNIFICANCE: Although several factors for the survival and persistence of HPAI viruses in the environment are still to be elucidated, and are particularly hard to control in laboratory conditions, our results, along with previous data, support the idea that environmental surveillance is of major relevance for avian influenza control programs.

  1. Selenium concentration in compartments of aquatic ecosystems in Central Chile

    Energy Technology Data Exchange (ETDEWEB)

    Pinochet, H.; Gregori, I. de; Cavieres, M.F. [Catholic University of Valparaiso, Valparaiso (Chile). Chemical Institute

    2002-07-01

    A study was conducted during 1995-96 to evaluate Se concentration in water, sediment, and plants from aquatic ecosystems of central Chile, an area particularly affected by mining activities. Samples were collected from Panquehue, Chagres, and Ocoa along the Acongua River (presumably receives discharges from a copper refinery and a copper mine). Samples were also collected from one site on the Puchuncavi Stream (directly contaminated by both a coal power plant and a copper refinery). In addition, samples were also collected from one site on the Limache Stream (an urban area with no Se-contaminating sources). The sediment and plant samples collected in Puchuncavi had higher Se levels, which were statistically different to the concentration in samples from other sites. Sediments from Puchuncavi and Ocoa had the highest levels of Se (520 plus or minus 46 and 440 plus or minus 10 {mu} g/kg, respectively) while the plant (Jussiaea repens (Ludwigia repens)) collected in Puchuncavi had an Se concentration 6.5 times higher than the sample collected in Panquehue (116 plus or minus 154 and 182 plus or minus 54 {mu} g/kg, respectively). Puchuncavi water had more acidic pH than water from the other sites thus decreasing Se solubility. Se concentrations in sediment and water collected in Chagres were lower than the concentration determined in sediment and water from either Ocoa or Panquehue. Plant/water and plant/sediment accumulation factors and a sediment/water distribution factor were similar for all sampling sites, except Puchuncavi (accumulation and distribution factors are higher than at the other sites). Hydrocotyle ranunculoides had practically the same plant/sediment accumulation factor at all sites while the accumulation factor for J. repens varied according to site. The samples collected in the Limache stream had Se at equal or even higher concentration than the other samples collected from presumably contaminated sites (except Puchuncavi). 19 refs.

  2. Microbial quality and physical-chemical characteristics of thermal springs.

    Science.gov (United States)

    Fazlzadeh, Mehdi; Sadeghi, Hadi; Bagheri, Pari; Poureshg, Yusef; Rostami, Roohollah

    2016-04-01

    Microbial quality and physical-chemical properties of recreational spas were surveyed to investigate the health aspect of the spas' water. A total of 195 samples were collected from pools and springs of the spas in five sites from Ardebil Province of Iran. The effects of an independent factor defined as 'condition' and its component sub-factors (i.e., sampling point, location, and sampling date) on microbial quality and physical-chemical properties of the spas were studied by applying path analysis. The influence of physical-chemical properties on microbial quality was also considered. The percentage of samples exceeding the ISIRI (Swimming pool water microbiological specifications (vol 9412), Institute of Standards and Industrial Research of Iran, Tehran, 2007) limits for Staphylococcus (spp.) was up to 55.8 in the springs and 87.8 in the pools, 58.1 and 99.2 for HPC, 90.7 and 97.8 for total coliform and fecal coliform, and 9.3 and 34.4 for Pseudomonas aeruginosa, respectively. There were significant differences between the pools and springs for both physical-chemical properties and microbial quality. From the path analysis, sampling point was the most effective sub-factor of 'condition' on both the physical-chemical properties and microbial quality. Among the physical-chemical properties, water color had the most enhancing or additive influence on microbial pollution, while EC indicated a reducing or subtractive effect. PMID:26072426

  3. Aquatic effect assessment for plant protection products

    OpenAIRE

    Brock, T.C.M.; Arts, G.H.P.; Hulscher, ten, T.E.M.; Jong, de, D.; Luttik, R.; Roex, E.; Smit, C.E.; Vliet, van, W.

    2011-01-01

    In this report new proposals for the aquatic effects assessment of plant protection products (pesticides) in the Netherlands are described for edge-of-field surface waters (drainage ditches) falling under the domain of the Plant Protection Product Regulation (pre-registration) and for water bodies falling under the domain of the Water Framework Directive (post-registration). These methods are developed on request of two Dutch ministries (Ministry of Economic Affairs, Agriculture and Innovatio...

  4. Toxicity of trifluoroacetate to aquatic organisms

    Energy Technology Data Exchange (ETDEWEB)

    Berends, A.G.; Rooij, C.G. de [Solvay S.A., Brussels (Belgium); Boutonnet, J.C. [Elf Atochem, Levallois-Perret (France); Thompson, R.S. [Zeneca Ltd., Devon (United Kingdom). Brixham Environmental Lab.

    1999-05-01

    As a result of the atmospheric degradation of several hydrofluorocarbons and hydrochlorofluorocarbons, trifluoroacetate (TFA) will be formed. Through precipitation, TFA will enter aquatic ecosystems. To evaluate the impact on the aquatic environment, an aquatic toxicity testing program was carried out with sodium trifluoroacetate (NaTFA). During acute toxicity tests, no effects of NaTFA on water fleas (Daphnia magna) and zebra fish (Danio retrio) were found at a concentration of 1,200 mg/L. A 7-d study with duckweed (Lemna gibba Ge) revealed a NOEC of 300 mg/L. On the basis of the results of five toxicity tests with Selenastrum capricornutum, they determined a NOEC of 0.12 mg/L. However, algal toxicity tests with NaTFA and Chlorella vulgaris, Scenedesmus subspicatus, Chlamydomonas reinhardtii, Dunaliella tertiolecta, Eugelan gracilis, Phaeodactylum tricornutum, Navicula pelliculosa, Skeletonema costatum, Anabaena flos-aquae, and Microcystis aeruginosa resulted in EC50 values that were all higher than 100 mg/L. The toxicity of TFA to S. capricornutum could be due to metabolic defluorination to monofluoroacetate (MFA), which is known to inhibit the citric acid cycle. A toxicity test with MFA and S. capricornutum revealed it to be about three orders of magnitude more toxic than TFA. However, a bioactivation study revealed that defluorination of TFA was less than 4%. On the other hand, S. capricornutum exposed to a toxic concentration of NaTFA showed a recovery of growth when citric acid was added, suggesting that TFA (or a metabolite of TFA) interferes with the citric acid cycle. A recovery of the growth of S. capricornutum was also found when TFA was removed from the test solutions. Therefore, TFA should be considered algistatic and not algicidic for S. capricornutum. On the basis of the combined results of the laboratory tests and a previously reported semi-field study, they can consider a TFA concentration of 0.10 mg/L as safe for the aquatic ecosystem.

  5. Cyanotoxins: Bioaccumulation and Effects on Aquatic Animals

    OpenAIRE

    Betina Kozlowsky-Suzuki; Ferrão-Filho, Aloysio da S.

    2011-01-01

    Cyanobacteria are photosynthetic prokaryotes with wide geographic distribution that can produce secondary metabolites named cyanotoxins. These toxins can be classified into three main types according to their mechanism of action in vertebrates: hepatotoxins, dermatotoxins and neurotoxins. Many studies on the effects of cyanobacteria and their toxins over a wide range of aquatic organisms, including invertebrates and vertebrates, have reported acute effects (e.g., reduction in survivorship, fe...

  6. Measuring Complexity in an Aquatic Ecosystem

    OpenAIRE

    Fernandez, Nelson; Gershenson, Carlos

    2013-01-01

    We apply formal measures of emergence, self-organization, homeostasis, autopoiesis and complexity to an aquatic ecosystem; in particular to the physiochemical component of an Arctic lake. These measures are based on information theory. Variables with an homogeneous distribution have higher values of emergence, while variables with a more heterogeneous distribution have a higher self-organization. Variables with a high complexity reflect a balance between change (emergence) and regularity/orde...

  7. Mechanical performance of aquatic rowing and flying.

    OpenAIRE

    Walker, J.A.; Westneat, M. W.

    2000-01-01

    Aquatic flight, performed by rowing or flapping fins, wings or limbs, is a primary locomotor mechanism for many animals. We used a computer simulation to compare the mechanical performance of rowing and flapping appendages across a range of speeds. Flapping appendages proved to be more mechanically efficient than rowing appendages at all swimming speeds, suggesting that animals that frequently engage in locomotor behaviours that require energy conservation should employ a flapping stroke. The...

  8. Antibiotics promote aggregation within aquatic bacterial communities

    OpenAIRE

    Corno, Gianluca; Coci, Manuela; Giardina, Marco; Plechuk, Sonia; Campanile, Floriana; Stefani, Stefania

    2014-01-01

    The release of antibiotics (AB) into the environment poses several threats for human health due to potential development of AB-resistant natural bacteria. Even though the use of low-dose antibiotics has been promoted in health care and farming, significant amounts of AB are observed in aquatic environments. Knowledge on the impact of AB on natural bacterial communities is missing both in terms of spread and evolution of resistance mechanisms, and of modifications of community composition and ...

  9. Antibiotics promote aggregation within aquatic bacterial communities

    OpenAIRE

    ManuelaCoci; MarcoGiardina

    2014-01-01

    The release of antibiotics (AB) into the environment poses several threats for human health due to potential development of ABresistant natural bacteria. Even though the use of low-dose antibiotics has been promoted in health care and farming, significant amounts of AB are observed in aquatic environments. Knowledge on the impact of AB on natural bacterial communities is missing both in terms of spread and evolution of resistance mechanisms, and of modifications of community composition and p...

  10. Aspects of Aquatic Pollution in Nigeria

    OpenAIRE

    A.T. Ekubo; J.F.N. Abowei

    2011-01-01

    Water pollution is a major problem in the global context. Yet aquatic resources consists of extremely wide range of floral and fauna resources which offer a broad array of goods with potential utilitarian application in agriculture, innovative industry and the pharmaceutical industry which renders valuable benefits and services. The slow poisoning of the waters is witnessed in Nigeria and the destruction of vegetation and agricultural land by oil spills which occur during petroleum operations...

  11. Aquatic models, genomics and chemical risk management.

    Science.gov (United States)

    Cheng, Keith C; Hinton, David E; Mattingly, Carolyn J; Planchart, Antonio

    2012-01-01

    The 5th Aquatic Animal Models for Human Disease meeting follows four previous meetings (Nairn et al., 2001; Schmale, 2004; Schmale et al., 2007; Hinton et al., 2009) in which advances in aquatic animal models for human disease research were reported, and community discussion of future direction was pursued. At this meeting, discussion at a workshop entitled Bioinformatics and Computational Biology with Web-based Resources (20 September 2010) led to an important conclusion: Aquatic model research using feral and experimental fish, in combination with web-based access to annotated anatomical atlases and toxicological databases, yields data that advance our understanding of human gene function, and can be used to facilitate environmental management and drug development. We propose here that the effects of genes and environment are best appreciated within an anatomical context - the specifically affected cells and organs in the whole animal. We envision the use of automated, whole-animal imaging at cellular resolution and computational morphometry facilitated by high-performance computing and automated entry into toxicological databases, as anchors for genetic and toxicological data, and as connectors between human and model system data. These principles should be applied to both laboratory and feral fish populations, which have been virtually irreplaceable sentinals for environmental contamination that results in human morbidity and mortality. We conclude that automation, database generation, and web-based accessibility, facilitated by genomic/transcriptomic data and high-performance and cloud computing, will potentiate the unique and potentially key roles that aquatic models play in advancing systems biology, drug development, and environmental risk management. PMID:21763781

  12. Avian Coronavirus in Wild Aquatic Birds

    OpenAIRE

    Chu, D. K. W.; Leung, C. Y. H.; Gilbert, M.; Joyner, P. H.; Ng, E. M.; Tse, T. M.; Guan, Y; Peiris, J. S. M.; Poon, L.L.M

    2011-01-01

    We detected a high prevalence (12.5%) of novel avian coronaviruses in aquatic wild birds. Phylogenetic analyses of these coronaviruses suggest that there is a diversity of gammacoronaviruses and deltacoronaviruses circulating in birds. Gammacoronaviruses were found predominantly in Anseriformes birds, whereas deltacoronaviruses could be detected in Ciconiiformes, Pelecaniformes, and Anseriformes birds in this study. We observed that there are frequent interspecies transmissions of gammacorona...

  13. Improving Fishpond Sediment by Aquatic Vegetable Rotation

    OpenAIRE

    Ling Tao; Chun-Xue Zhang; Jian-Qiang Zhu; Shi-Yang Zhang; Xiao-Li Li; Gu Li

    2012-01-01

    Continuously intensive fish farming results in pond degradation that needs to be improved. Therefore, the experiment rotating intensive fish culture with two aquatic vegetables lotus (Nelumbo nucifera) and water chestnuts (Eleocharis dulcis) cultivation is conducted aiming at determining the effect of rotation as a sediment management technique on improving the pond sediment and assessing the food safety risk of the vegetables cultivated in the pond sediment from the aspects of heavy metal. T...

  14. Impact of Organic farming on aquatic environment

    OpenAIRE

    Kristensen, Erik Steen; Knudsen, Marie Trydemann

    2004-01-01

    The effects of conversion to organic farming on N leaching are discussed in the presentation. Problems in European aquatic environment are presented along with the development of organic farming in Denmark and the rest of Europe. Recent Danish studies on the N leaching effects by conversion of mixed dairy and arable farms are presented. The studies estimate that N leaching is lower from organic compared to conventional mixed dairy farms, whereas N leaching at organic arable farms are comparab...

  15. Microbial transformation of uranium in wastes

    International Nuclear Information System (INIS)

    Contamination of soils, water, and sediments by radionuclides and toxic metals from the disposal of uranium processing wastes is a major national concern. Although much is known about the physico- chemical aspects of U, we have little information on the effects of aerobic and anaerobic microbial activities on the mobilization or immobilization of U and other toxic metals in mixed wastes. In order to understand the mechanisms of microbial transformations of uranium, we examined a contaminated pond sediment and a sludge sample from the uranium processing facility at Y-12 Plant, Oak Ridge, TN. The uranium concentration in the sediment and sludge samples was 923 and 3080 ug/g dry wt, respectively. In addition to U, the sediment and sludge samples contained high levels of toxic metals such as Cd, Cr, Cu, Hg, Pb, Ni, and Zn. The association of uranium with the various mineral fractions of the sediment and sludge was determined by selective chemical extraction techniques. Uranium was associated to varying degrees with the exchangeable carbonate, iron oxide, organic, and inert fractions in both samples. Initial results in samples amended with carbon and nitrogen indicate immobilization of U due to enhanced indigenous microbial activity under anaerobic conditions. 23 refs., 4 figs., 5 tabs

  16. Mycoloop: chytrids in aquatic food webs.

    Science.gov (United States)

    Kagami, Maiko; Miki, Takeshi; Takimoto, Gaku

    2014-01-01

    Parasites are ecologically significant in various ecosystems through their role in shaping food web structure, facilitating energy transfer, and controlling disease. Here in this review, we mainly focus on parasitic chytrids, the dominant parasites in aquatic ecosystems, and explain their roles in aquatic food webs, particularly as prey for zooplankton. Chytrids have a free-living zoosporic stage, during which they actively search for new hosts. Zoospores are excellent food for zooplankton in terms of size, shape, and nutritional quality. In the field, densities of chytrids can be high, ranging from 10(1) to 10(9) spores L(-1). When large inedible phytoplankton species are infected by chytrids, nutrients within host cells are transferred to zooplankton via the zoospores of parasitic chytrids. This new pathway, the "mycoloop," may play an important role in shaping aquatic ecosystems, by altering sinking fluxes or determining system stability. The grazing of zoospores by zooplankton may also suppress outbreaks of parasitic chytrids. A food web model demonstrated that the contribution of the mycoloop to zooplankton production increased with nutrient availability and was also dependent on the stability of the system. Further studies with advanced molecular tools are likely to discover greater chytrid diversity and evidence of additional mycoloops in lakes and oceans. PMID:24795703

  17. Mycoloop: chytrids in aquatic food webs

    Directory of Open Access Journals (Sweden)

    Maiko eKagami

    2014-04-01

    Full Text Available Parasites are ecologically significant in various ecosystems through their role in shaping food web structure, facilitating energy transfer, and controlling disease. Here in this review, we mainly focus on parasitic chytrids, the dominant parasites in aquatic ecosystems, and explain their roles in aquatic food webs, particularly as prey for zooplankton. Chytrids have a free-living zoosporic stage, during which they actively search for new hosts. Zoospores are excellent food for zooplankton in terms of size, shape, and nutritional quality. In the field, densities of chytrids can be high, ranging from 101-109 spores L-1. When large inedible phytoplankton species are infected by chytrids, nutrients within host cells are transferred to zooplankton via the zoospores of parasitic chytrids. This new pathway, the ‘mycoloop,’ may play an important role in shaping aquatic ecosystems, by altering sinking fluxes or determining system stability. The grazing of zoospores by zooplankton may also suppress outbreaks of parasitic chytrids. A food web model demonstrated that the contribution of the mycoloop to zooplankton production increased with nutrient availability and was also dependent on the stability of the system. Further studies with advanced molecular tools are likely to discover greater chytrid diversity and evidence of additional mycoloops in lakes and oceans.

  18. Phytoremediation using eichhornia crassipes aquatic plant

    International Nuclear Information System (INIS)

    Phytoremediation is a cost effective approach for the Treatment of polluted soil and contaminated water. The effectiveness of one aquatic plant Eichhornia crassipes was evaluated for its capability in removing copper from copper solution using atomic absorption spectroscopy (AAS). The aquatic plant was placed in solutions containing 2 mg/L, 4 mg/L an d 6 mg/L of copper, for a period of 18 days and the change in Cu concentration was measured. Results showed an increase of copper within the plants' root and shoot tissues and a decrease of copper concentration in the solution. It was found that roots tend to accumulate a higher amount of copper than shoots due to translocation process. The maximum growth of Eichhornia crassipes was in the 2 mg/L solution which shows that growth was affected by the presence of Cu in the water. The maximum removal of copper in the solutions containing Eichhornia crassipes was 87.5% from the 4 mg/L solution. Eichhornia crassipes accumulated upto 1265.0 mg/kg of Cu in its roots indicating that this aquatic plant species may be used as a hyper-accumulator for copper. (author)

  19. Microbial Diversity Aboard Spacecraft: Evaluation of the International Space Station

    Science.gov (United States)

    Castro, Victoria A.; Thrasher, Adrianna N.; Healy, Mimi; Ott, C. Mark; Pierson, Duane L.

    2003-01-01

    An evaluation of the microbial flora from air, water, and surface samples provided a baseline of microbial diversity onboard the International Space Station (ISS) to gain insight into bacterial and fungal contamination during the initial stages of construction and habitation. Using 16S genetic sequencing and rep-PeR, 63 bacterial strains were isolated for identification and fingerprinted for microbial tracking. The use of these molecular tools allowed for the identification of bacteria not previously identified using automated biochemical analysis and provided a clear indication of the source of several ISS contaminants. Fungal and bacterial data acquired during monitoring do not suggest there is a current microbial hazard to the spacecraft, nor does any trend indicate a potential health risk. Previous spacecraft environmental analysis indicated that microbial contamination will increase with time and require continued surveillance.

  20. Microbial bioinformatics 2020.

    Science.gov (United States)

    Pallen, Mark J

    2016-09-01

    Microbial bioinformatics in 2020 will remain a vibrant, creative discipline, adding value to the ever-growing flood of new sequence data, while embracing novel technologies and fresh approaches. Databases and search strategies will struggle to cope and manual curation will not be sustainable during the scale-up to the million-microbial-genome era. Microbial taxonomy will have to adapt to a situation in which most microorganisms are discovered and characterised through the analysis of sequences. Genome sequencing will become a routine approach in clinical and research laboratories, with fresh demands for interpretable user-friendly outputs. The "internet of things" will penetrate healthcare systems, so that even a piece of hospital plumbing might have its own IP address that can be integrated with pathogen genome sequences. Microbiome mania will continue, but the tide will turn from molecular barcoding towards metagenomics. Crowd-sourced analyses will collide with cloud computing, but eternal vigilance will be the price of preventing the misinterpretation and overselling of microbial sequence data. Output from hand-held sequencers will be analysed on mobile devices. Open-source training materials will address the need for the development of a skilled labour force. As we boldly go into the third decade of the twenty-first century, microbial sequence space will remain the final frontier! PMID:27471065

  1. The Dynamics of the Microbial Population as Measured by the Quantification of adenosine 5'-triphosphate (ATP) at Three Sampling Locations Within the North Inlet Estuary, Georgetown, SC: 1981-1985.

    Data.gov (United States)

    Baruch Institute for Marine and Coastal Sciences, Univ of South Carolina — Water samples were collected daily at approximately 10:00 AM, from a depth of 50 cm at three stations, and transported immediately to the laboratory. The three...

  2. Microbial Biofilm Community Variation in Flowing Habitats: Potential Utility as Bioindicators of Postmortem Submersion Intervals

    OpenAIRE

    Jennifer M. Lang; Racheal Erb; Jennifer L. Pechal; Wallace, John R.; Ryan W. McEwan; Mark Eric Benbow

    2016-01-01

    Biofilms are a ubiquitous formation of microbial communities found on surfaces in aqueous environments. These structures have been investigated as biomonitoring indicators for stream heath, and here were used for the potential use in forensic sciences. Biofilm successional development has been proposed as a method to determine the postmortem submersion interval (PMSI) of remains because there are no standard methods for estimating the PMSI and biofilms are ubiquitous in aquatic habitats. We s...

  3. Functional ecology of microbial freshwater communities from Byers Peninsula (Livingston Island, Antarctica)

    OpenAIRE

    Rochera Cordellat, Carlos

    2012-01-01

    This thesis studies the microbial communities inhabiting freshwater ecosystems of Byers Peninsula (Livingston Island, Antarctica). This is an ice-free area of around 60 km2 that holds numerous lakes, ponds, rivers and wetlands. As a deglaciated region, the functioning of aquatic ecosystems is very closely linked with the surrounding land. So, when snow melting occurs during summer, interactions with the catchment become more intense, and coincide with enhanced biological activity. We conducte...

  4. Biostimulation of metal-resistant microbial consortium to remove zinc from contaminated environments.

    Science.gov (United States)

    Mejias Carpio, Isis E; Franco, Diego Castillo; Zanoli Sato, Maria Inês; Sakata, Solange; Pellizari, Vivian H; Seckler Ferreira Filho, Sidney; Frigi Rodrigues, Debora

    2016-04-15

    Understanding the diversity and metal removal ability of microorganisms associated to contaminated aquatic environments is essential to develop metal remediation technologies in engineered environments. This study investigates through 16S rRNA deep sequencing the composition of a biostimulated microbial consortium obtained from the polluted Tietê River in São Paulo, Brazil. The bacterial diversity of the biostimulated consortium obtained from the contaminated water and sediment was compared to the original sample. The results of the comparative sequencing analyses showed that the biostimulated consortium and the natural environment had γ-Proteobacteria, Firmicutes, and uncultured bacteria as the major classes of microorganisms. The consortium optimum zinc removal capacity, evaluated in batch experiments, was achieved at pH=5 with equilibrium contact time of 120min, and a higher Zn-biomass affinity (KF=1.81) than most pure cultures previously investigated. Analysis of the functional groups found in the consortium demonstrated that amine, carboxyl, hydroxyl, and phosphate groups present in the consortium cells were responsible for zinc uptake. PMID:26849331

  5. Microbial exoenzymes as bioindicators of acid rock drainage impacts in the Finniss River

    International Nuclear Information System (INIS)

    Sediment samples were collected from several sites along the East Branch of the Finniss River during the dry season (June, 1999), when the East Branch is drying into a series of ponds. The sites included those upstream from the Rum Jungle mine site (EB8A, EB8B, FCA, FCB), a site receiving acid leachate from the waste rock (WO), sites downstream from the mine that are impacted by acid and metal contamination (EB6, TCP, EB5D, EB4U, EB2) and reference sites not subject to acid rock drainage (HS, EB4S, LFRB). Exoenzyme activities were measured with a spectrofluorometric technique that involved measuring the increase in fluorescence when an artificial fluorogenic substrate (that mimics the natural substrate) is hydrolysed to a highly fluorescent product. The present findings indicate that the acid rock drainage impacted sediments contain acidophilic, heterotrophic microorganisms, bacteria and/or fungi, producing extracellular enzymes adapted to the acid conditions. This study has demonstrated that measurements of extracellular enzyme activities in river sediments provide a rapid, sensitive technique for determining microbial activity and productivity. In aquatic ecosystems some exoenzymes, particularly leucine-aminopeptidase, could be used as bioindicators of pollution from acid rock drainage

  6. Can metal nanoparticles be a threat to microbial decomposers of plant litter in streams?

    Science.gov (United States)

    Pradhan, Arunava; Seena, Sahadevan; Pascoal, Cláudia; Cássio, Fernanda

    2011-07-01

    The extensive use of nanometal-based products increases the chance of their release into aquatic environments, raising the question whether they can pose a risk to aquatic biota and the associated ecological processes. Aquatic microbes, namely fungi and bacteria, play a key role in forested streams by decomposing plant litter from terrestrial vegetation. Here, we investigated the effects of nanocopper oxide and nanosilver on leaf litter decomposition by aquatic microbes, and the results were compared with the impacts of their ionic precursors. Alder leaves were immersed in a stream of Northwest Portugal to allow microbial colonization before being exposed in microcosms to increased nominal concentrations of nanometals (CuO, 100, 200 and 500 ppm; Ag, 100 and 300 ppm) and ionic metals (Cu(2+) in CuCl(2), 10, 20 and 30 ppm; Ag(+) in AgNO(3), 5 and 20 ppm) for 21 days. Results showed that rates of leaf decomposition decreased with exposure to nano- and ionic metals. Nano- and ionic metals inhibited bacterial biomass (from 68.6% to 96.5% of control) more than fungal biomass (from 28.5% to 82.9% of control). The exposure to increased concentrations of nano- and ionic metals decreased fungal sporulation rates from 91.0% to 99.4%. These effects were accompanied by shifts in the structure of fungal and bacterial communities based on DNA fingerprints and fungal spore morphology. The impacts of metal nanoparticles on leaf decomposition by aquatic microbes were less pronounced compared to their ionic forms, despite metal ions were applied at one order of magnitude lower concentrations. Overall, results indicate that the increased release of nanometals to the environment may affect aquatic microbial communities with impacts on organic matter decomposition in streams. PMID:21553058

  7. The Microbial Olympics.

    Science.gov (United States)

    Youle, Merry; Rohwer, Forest; Stacy, Apollo; Whiteley, Marvin; Steel, Bradley C; Delalez, Nicolas J; Nord, Ashley L; Berry, Richard M; Armitage, Judith P; Kamoun, Sophien; Hogenhout, Saskia; Diggle, Stephen P; Gurney, James; Pollitt, Eric J G; Boetius, Antje; Cary, S Craig

    2012-08-01

    Every four years, the Olympic Games plays host to competitors who have built on their natural talent by training for many years to become the best in their chosen discipline. Similar spirit and endeavour can be found throughout the microbial world, in which every day is a competition to survive and thrive. Microorganisms are trained through evolution to become the fittest and the best adapted to a particular environmental niche or lifestyle, and to innovate when the 'rules of the game' are changed by alterations to their natural habitats. In this Essay, we honour the best competitors in the microbial world by inviting them to take part in the inaugural Microbial Olympics. PMID:22796885

  8. Critical parameters influencing microbial corrosion

    Energy Technology Data Exchange (ETDEWEB)

    Ferris, F.G.

    1991-03-31

    The effects of injection water chemistry on the development of corrosive microbial biofilms, corrosion rates, and deposition of corrosion deposits was studied at an oil field water injection test facility in Alberta. Data were collected during two separate 12 week duration experimental runs. Attached bacterial populations were allowed to develop on removable steel sample coupons, and chemical treatment started after four weeks. Two different cocodiamine and bromonitropropane-diol based biocides were used in addition to a phosphate scale inhibitor. Of the various constituents present in the injection water, sulfate was noted as having a strong stimulative effect on sulfate reducing bacteria (SRB). Nitrate was inhibitory, whereas sulfide exhibited a positive correlation with SRB. While high concentrations of magnesium constrained SRB and organic acid producing bacteria (APB), high bacterial counts coincided with an apparent optimal range of 15 to 20 ppM total organic carbon. The results indicated that injection water chemistry strongly influences microbial growth and population distribution in water injection systems. Scanning electron microscopy indicated that complex pore geometries contribute to the meager permeability that constrains the penetration of biocides into biofilms. Most of the iron sulfide corrosion deposits consisted of an amorphous sulfur-deficient chlorine-rich phase, which sustains high corrosion rates when depolarized by hydrogen consuming SRB. 33 refs., 54 figs., 3 tabs.

  9. Diets and abundances of aquatic and semi-aquatic reptiles in the Alligator Rivers Region

    International Nuclear Information System (INIS)

    The mining and milling of uranium in the Alligator River Region in the Northern Territory has raised the possibility that heavy metals and radionuclides might escape into the aquatic system and be accumulated by the reptilian fauna. Aquatic and semi-aquatic reptiles are regularly eaten by Aboriginal people of the region, and data on diets and reproduction of these species, as well as on their dispersion and abundance, are essential before the possibility that reptiles might act as pathways for these contaminants to Aboriginals can be assessed. The objectives of this study were to provide quantitative data on the diets of filesnakes, sand goannas and water goannas, to provide information on seasonal changes in their abundance and distribution within the Magela Creek system; and to describe their reproductive cycles

  10. Microbial Corrosion: 1988 Workshop Proceedings

    Energy Technology Data Exchange (ETDEWEB)

    None

    1989-04-01

    Microbial action can greatly increase corrosion damage in power plant water systems. This workshop pulled together practical experience and theoretical knowledge on microbially induced corrosion, documented diagnostic and treatment methods, and identified areas for future research.

  11. Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem

    Science.gov (United States)

    Asplund-Samuelsson, Johannes; Sundh, John; Dupont, Chris L.; Allen, Andrew E.; McCrow, John P.; Celepli, Narin A.; Bergman, Birgitta; Ininbergs, Karolina; Ekman, Martin

    2016-01-01

    Metacaspases are distant homologs of metazoan caspase proteases, implicated in stress response, and programmed cell death (PCD) in bacteria and phytoplankton. While the few previous studies on metacaspases have relied on cultured organisms and sequenced genomes, no studies have focused on metacaspases in a natural setting. We here present data from the first microbial community-wide metacaspase survey; performed by querying metagenomic and metatranscriptomic datasets from the brackish Baltic Sea, a water body characterized by pronounced environmental gradients and periods of massive cyanobacterial blooms. Metacaspase genes were restricted to ~4% of the bacteria, taxonomically affiliated mainly to Bacteroidetes, Alpha- and Betaproteobacteria and Cyanobacteria. The gene abundance was significantly higher in larger or particle-associated bacteria (>0.8 μm), and filamentous Cyanobacteria dominated metacaspase gene expression throughout the bloom season. Distinct seasonal expression patterns were detected for the three metacaspase genes in Nodularia spumigena, one of the main bloom-formers. Clustering of normalized gene expression in combination with analyses of genomic and assembly data suggest functional diversification of these genes, and possible roles of the metacaspase genes related to stress responses, i.e., sulfur metabolism in connection to oxidative stress, and nutrient stress induced cellular differentiation. Co-expression of genes encoding metacaspases and nodularin toxin synthesis enzymes was also observed in Nodularia spumigena. The study shows that metacaspases represent an adaptation of potentially high importance for several key organisms in the Baltic Sea, most prominently Cyanobacteria, and open up for further exploration of their physiological roles in microbes and assessment of their ecological impact in aquatic habitats. PMID:27458440

  12. Ecotoxicity of selected nano-materials to aquatic organisms.

    Science.gov (United States)

    Blaise, C; Gagné, F; Férard, J F; Eullaffroy, P

    2008-10-01

    Present knowledge concerning the ecotoxic effects of nano-materials is very limited and merits to be documented more fully. For this purpose, we appraised the toxicity of nine metallic nano-powders (copper zinc iron oxide, nickel zinc iron oxide, yttrium iron oxide, titanium dioxide, strontium ferrite, indium tin oxide, samarium oxide, erbium oxide, and holmium oxide) and of two organic nano- powders (fullerene-C60 and single-walled carbon nanotube or SWCNT). After a simple process where nano-powders (NPs) were prepared in aqueous solution and filtered, they were then bioassayed across several taxonomic groups including decomposers (bacteria), primary producers (micro-algae), as well as primary and secondary consumers (micro-invertebrates and fish). Toxicity data generated on the 11 NPs reflected a wide spectrum of sensitivity that was biological level-, test-, and endpoint-specific. With all acute and chronic tests confounded for these 11 NPs, toxicity responses spanned over three orders of magnitude: >463 mg/L (24 h LC50 of the invertebrate Thamnoplatyurus platyurus for fullerene-C60) / 0.3 mg/L (96 h EC50 of the invertebrate Hydra attenuata for indium tin oxide), that is a ratio of 1543. On the basis of the MARA (Microbial Array for Risk Assessment) assay toxic fingerprint concept, it is intimated that NPs may have different modes of toxic action. When mixed in a 1:1 ratio with a certified reference material (CRM) sediment, two solid phase assays and an elutriate assay, respectively, showed that five NPs (copper zinc iron oxide, samarium oxide, erbium oxide, holmium oxide, and SWCNT) were able to increase both CRM sediment toxicity and its elutriate toxicity. This initial investigation suggests that chemicals emerging from nanotechnology may pose a risk to aquatic life in water column and sediment compartments and that further studies on their adverse effects are to be encouraged. PMID:18528913

  13. The effect of source material in determining the photoreactivity of DOM in peatland aquatic systems

    Science.gov (United States)

    Pickard, Amy; Heal, Kate; McLeod, Andy; Dinsmore, Kerry

    2016-04-01

    Aquatic systems draining peatlands receive a high loading of dissolved organic matter (DOM) from surrounding terrestrial environments. However the fate of aquatic DOM remains poorly constrained, in part due to lack of knowledge regarding the photoreactivity of DOM and how this changes as a function of variability in source material. In this study water samples were collected monthly for a 13-month period from two contrasting aquatic systems in Scotland: a stream draining a peatland with high DOM concentrations (33.3 ± 14.2 mg DOC L‑1) and a reservoir draining a peat catchment with low DOM concentrations (4.16 ± 0.91 mg DOC L‑1). Controlled UV irradiation laboratory experiments were conducted on samples filtered to 0.2 μm in order to assess the photoreactivity of the DOM, measured as the unit mass of DOC lost upon irradiation. Experiments took place over 8h in temperature controlled conditions, with unirradiated samples used as controls. After exposure, a range of analytical techniques were used to characterise the DOM to yield information about its source material and to determine how this was related to the observed photoreactivity. Lignin phenol analyses indicate considerable contribution of Sphagnum to DOM at the stream site, particularly during summer, as demonstrated by high P-hydroxy/Vanillyl phenol ratios (P/V). Low P/V ratios were correlated with increased photoreactivity, (Pearson's: -0.410; p = 0.15, n = 13), suggesting that DOM from woody lignin sources within the catchment was more photolabile. Photoreactivity was also negatively correlated with Fluorescence Index (FI) values (Pearson's: -0.555; p = 0.055, n = 13), where low FI values are understood to indicate greater contribution of terrestrially derived material to aquatic DOM. Excitation-emission matrices (EEMs) indicate that DOM at the stream site was primarily comprised of a humic-like peak (Ex/Em = 340, 380/460 nm). However, there was also contribution from a protein-like peak (Ex/Em = 290

  14. Microbial Risk and Control During Long Duration Space Exploration Missions

    Science.gov (United States)

    Ott, C. Mark

    2016-01-01

    As human explore space, they will be accompanied by microorganisms. Historically, the approach to microbial control on spacecraft has been to minimize the number of detectable organisms, relying heavily on preventative measures, including appropriate vehicle design, crew quarantine prior to flight, and extensive microbial monitoring. Preflight monitoring targets have included the astronauts, spaceflight foods, potable water systems, the vehicle air and surfaces, and the cargo carried aboard the spacecraft. This approach has been very successful for short duration missions; however, habitation of the International Space Station (ISS) has reinforced the importance of inflight microbial monitoring. Current ISS inflight monitoring evaluates potable water sources and vehicle air and surfaces. The hardware uses media-based growth and is designed for microbial enumeration during spaceflight followed by microbial identification after return of samples to Earth. For future missions beyond Earth orbit, microbial monitoring capabilities will need to be improved to enable rapid inflight identification of viable microorganisms. Inflight monitoring may also need to be expanded beyond ISS targets to include food grown in the habitat, food preparation areas, and/or clinical samples. Establishing requirements for many of these samples remains a major gap in implementing this type of next-generation approach to risk assessment and control. An additional consideration in assessment of microbial risk is research that indicates that the spaceflight environment alters crewmember immune function, microbial diversity, and molecular-genetic and phenotypic responses of microorganism, including virulence and antibiotic resistance. Taken together, in preparation for long duration space exploration missions, NASA faces new challenges in microbial risk assessment, monitoring and control that must be understood and addressed to mitigate threats to crew health and mission success.

  15. Research of radiation-resistant microbial organisms

    International Nuclear Information System (INIS)

    Many extremophiles including radiation-resistant bacteria Deinococcus radiodurans have special characteristics such as novel enzymes and physiological active substances different from known biological materials and are being in the spotlight of biotechnology science. In this research, basic technologies for the production of new genetic resources and microbial strains by a series of studies in radiation-resistant microbial organisms were investigated and developed. Mechanisms required for radiation-resistant in Deinococcus radiodurans were partly defined by analyzing the function of dinB, pprI, recG, DRA0279, pprM, and two-component signal transduction systems. To apply genetic resource and functional materials from Deinococcus species, omics analysis in response to cadmium, construction of macroscopic biosensor, and characterization of carotenoids and chaperon protein were performed. Additionally, potential use of D. geothermalis in monosaccharide production from non-biodegradable plant materials was evaluated. Novel radiation resistant yeasts and bacteria were isolated and identified from environmental samples to obtain microbial and genomic resources. An optimal radiation mutant breeding method was set up for efficient and rapid isolation of target microbial mutants. Furthermore, an efficient ethanol producing mutant strain with high production yield and productivity was constructed using the breeding method in collaboration with Korea Research Institute of Bioscience and Biotechnology. Three Deinococcal bioindicators for radiation dosage confirmation after radiation sterilization process were developed. These results provide a comprehensive information for novel functional genetic elements, enzymes, and physiological active substances production or application. Eventually, industrial microbial cell factories based on radiation resistant microbial genomes can be developed and the technologies can be diffused to bioindustry continuously by this project

  16. Cave speleothems as repositories of microbial biosignatures

    Science.gov (United States)

    Miller, Ana Z.; Jurado, Valme; Pereira, Manuel F. C.; Fernández, Octavio; Calaforra, José M.; Dionísio, Amélia; Saiz-Jimenez, Cesareo

    2015-04-01

    The need to better understand the biodiversity, origins of life on Earth and on other planets, and the wide applications of the microbe-mineral interactions have led to a rapid expansion of interest in subsurface environments. Recently reported results indicated signs of an early wet Mars and rather recent volcanic activity which suggest that Mars's subsurface can house organic molecules or traces of microbial life, making the search for microbial life on Earth's subsurface even more compelling. Caves on Earth are windows into the subsurface that harbor a wide variety of mineral-utilizing microorganisms, which may contribute to the formation of biominerals and unusual microstructures recognized as biosignatures. These environments contain a wide variety of redox interfaces and stable physicochemical conditions, which enhance secondary mineral precipitation and microbial growth under limited organic nutrient inputs. Enigmatic microorganisms and unusual mineral features have been found associated with secondary mineral deposits or speleothems in limestone caves and lava tubes. In this study, Field Emission Scanning Electron Microscopy (FESEM) and Energy Dispersive X-ray spectroscopy (EDS) analyses were conducted on cave speleothem samples to assess microbe-mineral interactions, evaluate biogenicity, as well as to describe unusual mineral formations and microbial features. Microbial mats, extracellular polymeric substances, tubular empty sheaths, mineralized cells, filamentous fabrics, as well as "cell-sized" etch pits or microborings produced by bacterial cells were observed on minerals. These features evidence microbe-mineral interactions and may represent mineralogical signatures of life. We can thus consider that caves on Earth are plausible repositories of terrestrial biosignatures where we can look for microbial signatures. Acknowledgments: AZM acknowledges the support from the Marie Curie Intra-European Fellowship within the 7th European Community Framework

  17. Research of radiation-resistant microbial organisms

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dongho; Lim, Sangyong; Joe, Minho; Park, Haejoon; Song, Hyunpa; Im, Seunghun; Kim, Haram; Kim, Whajung; Choi, Jinsu; Park, Jongchun

    2012-01-15

    Many extremophiles including radiation-resistant bacteria Deinococcus radiodurans have special characteristics such as novel enzymes and physiological active substances different from known biological materials and are being in the spotlight of biotechnology science. In this research, basic technologies for the production of new genetic resources and microbial strains by a series of studies in radiation-resistant microbial organisms were investigated and developed. Mechanisms required for radiation-resistant in Deinococcus radiodurans were partly defined by analyzing the function of dinB, pprI, recG, DRA{sub 0}279, pprM, and two-component signal transduction systems. To apply genetic resource and functional materials from Deinococcus species, omics analysis in response to cadmium, construction of macroscopic biosensor, and characterization of carotenoids and chaperon protein were performed. Additionally, potential use of D. geothermalis in monosaccharide production from non-biodegradable plant materials was evaluated. Novel radiation resistant yeasts and bacteria were isolated and identified from environmental samples to obtain microbial and genomic resources. An optimal radiation mutant breeding method was set up for efficient and rapid isolation of target microbial mutants. Furthermore, an efficient ethanol producing mutant strain with high production yield and productivity was constructed using the breeding method in collaboration with Korea Research Institute of Bioscience and Biotechnology. Three Deinococcal bioindicators for radiation dosage confirmation after radiation sterilization process were developed. These results provide a comprehensive information for novel functional genetic elements, enzymes, and physiological active substances production or application. Eventually, industrial microbial cell factories based on radiation resistant microbial genomes can be developed and the technologies can be diffused to bioindustry continuously by this project.

  18. Population genetics of the aquatic fungus Tetracladium marchalianum over space and time.

    Directory of Open Access Journals (Sweden)

    Jennifer L Anderson

    Full Text Available Aquatic hyphomycete fungi are fundamental mediators of energy flow and nutrient spiraling in rivers. These microscopic fungi are primarily dispersed in river currents, undergo substantial annual fluctuations in abundance, and reproduce either predominantly or exclusively asexually. These aspects of aquatic hyphomycete biology are expected to influence levels and distributions of genetic diversity over both spatial and temporal scales. In this study, we investigated the spatiotemporal distribution of genotypic diversity in the representative aquatic hyphomycete Tetracladium marchalianum. We sampled populations of this fungus from seven sites, three sites each in two rivers in Illinois, USA, and one site in a Wisconsin river, USA, and repeatedly sampled one population over two years to track population genetic parameters through two seasonal cycles. The resulting fungal isolates (N = 391 were genotyped at eight polymorphic microsatellite loci. In spite of seasonal reductions in the abundance of this species, genotypic diversity was consistently very high and allele frequencies remarkably stable over time. Likewise, genotypic diversity was very high at all sites. Genetic differentiation was only observed between the most distant rivers (∼450 km. Clear evidence that T. marchalianum reproduces sexually in nature was not observed. Additionally, we used phylogenetic analysis of partial β-tubulin gene sequences to confirm that the fungal isolates studied here represent a single species. These results suggest that populations of T. marchalianum may be very large and highly connected at local scales. We speculate that large population sizes and colonization of alternate substrates in both terrestrial and aquatic environments may effectively buffer the aquatic populations from in-stream population fluctuations and facilitate stability in allele frequencies over time. These data also suggest that overland dispersal is more important for structuring

  19. Molecular ecology of microbial mats

    NARCIS (Netherlands)

    Bolhuis, H.; Cretoiu, M.S.; Stal, L.J.

    2014-01-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep

  20. Microbial electricity generation in rice paddy fields: recent advances and perspectives in rhizosphere microbial fuel cells.

    Science.gov (United States)

    Kouzuma, Atsushi; Kaku, Nobuo; Watanabe, Kazuya

    2014-12-01

    Microbial fuel cells (MFCs) are devices that use living microbes for the conversion of organic matter into electricity. MFC systems can be applied to the generation of electricity at water/sediment interfaces in the environment, such as bay areas, wetlands, and rice paddy fields. Using these systems, electricity generation in paddy fields as high as ∼80 mW m(-2) (based on the projected anode area) has been demonstrated, and evidence suggests that rhizosphere microbes preferentially utilize organic exudates from rice roots for generating electricity. Phylogenetic and metagenomic analyses have been conducted to identify the microbial species and catabolic pathways that are involved in the conversion of root exudates into electricity, suggesting the importance of syntrophic interactions. In parallel, pot cultures of rice and other aquatic plants have been used for rhizosphere MFC experiments under controlled laboratory conditions. The findings from these studies have demonstrated the potential of electricity generation for mitigating methane emission from the rhizosphere. Notably, however, the presence of large amounts of organics in the rhizosphere drastically reduces the effect of electricity generation on methane production. Further studies are necessary to evaluate the potential of these systems for mitigating methane emission from rice paddy fields. We suggest that paddy-field MFCs represent a promising approach for harvesting latent energy of the natural world. PMID:25394406

  1. Relationship between aquatic insects and heavy metals in an urban stream using multivariate techniques

    International Nuclear Information System (INIS)

    In the study, the relationship between some aquatic insect species (Ephemeroptera, Plecoptera, Trichoptera and Odonata) and some heavy metals (cadmium, lead, copper, zinc, nickel, iron and manganese) and boron were assessed using data obtained from the Ankara Stream, which flows through Ankara, the capital city of Turkey and receives high organic and industrial wastes. Sampling was carried out monthly along the Ankara Stream in 1991. Environmental data were used to explain biological variation using multivariate techniques provided by the program canonical correspondence analysis ordination. The ordination method canonical correspondence analysis was applied to evaluate the relationships between environmental variables and distribution of aquatic insect larvae. Data sets were classified by two way indicator species analysis. In this study, aquatic insecta communities have been shown by canonical correspondence analysis ordination as related to total hardness, p H, cadmium, lead, copper, zinc, nickel, iron, manganese and boron. Cadmium, lead, copper and boron exceeded limits of the United States Environmental Protection Agency criteria for aquatic life. Trichopteran, Dinarthrum iranicum was an indicator of two way indicator species analysis and was placed close to the arrow representing copper. Odonate, Aeschna juncea was an indicator of two way indicator species analysis in site 10 and was placed close to the arrows representing manganese, lead, and nickel. Trichopteran, Cheumatopsyche lepida and odonate, Platycnemis pennipes were indicators of two way indicator species analysis for sites 6, 7, 11, 14, 15, 18 and were placed close to the arrows representing cadmium, boron, iron and total hardness.

  2. Fuzzy model for risk assessment of persistent organic pollutants in aquatic ecosystems

    International Nuclear Information System (INIS)

    We developed a model for evaluating the environmental risk of persistent organic pollutants (POPs) to aquatic organisms. The model is based on fuzzy theory and uses information provided by international experts through a questionnaire. It has been tested in two case studies for a particular type of POPs: brominated flame retardants (BFRs). The first case study is related to the EU-funded AQUATERRA project, with sampling campaigns carried out in two Ebro tributaries in Spain (the Cinca and Vero Rivers). The second one, named the BROMACUA project, assessed different aquatic ecosystems in Chile (San Vicente Bay) and Colombia (Santa Marta Marsh). In both projects, the BFRs under study were polybrominated diphenyl ethers (PBDEs) and hexabromocyclododecane (HBCD). However, the model can be extrapolated to other POPs and to different aquatic ecosystems to provide useful results for decision-makers. -- The risk of POPs for aquatic organisms was assessed at several sites around the world, using a fuzzy-based model to provide useful results for decision-makers

  3. Coupling interaction between biodiversity and aquatic habitat area in Western Route Project vicinity

    Institute of Scientific and Technical Information of China (English)

    Shi-min TIAN; Zhao-yin WANG; Xiang-jun LIU; Shi-kui LIANG

    2010-01-01

    The Western Route of the South-to-North Water Transfer Project will divert water from the upper Yangtze River and its tributaries,the Dadu River and Yalong River,to the upper Yellow River.The project may ease the water shortage in the Yellow River Basin.However,it may also have some effects on the ecosystem in the upper Yangtze River Basin.Benthic invertebrates play an important role in the river ecosystem,particularly in the circulation of materials and nutrition.Benthic invertebrates are widely used to quickly assess river ecosystems because of their rapid response to changes in the water environment.The diversity of benthic invertebrates is closely associated with the aquatic habitat area.This study examined this interaction by sampling the benthic invertebrates in an expanding area.The conclusions are that the diversity of benthic invertebrates begins to decrease when the aquatic habitat area is reduced to 45% of the original area,and decreases dramatically when the aquatic habitat area is reduced to 10% of the original area.The aquatic habitat area should be kept at more than 45% of the original area in order to maintain the significant diversity of benthic invertebrates.

  4. Nitrous oxide sinks and emissions in boreal aquatic networks in Québec

    Science.gov (United States)

    Soued, C.; Del Giorgio, P. A.; Maranger, R.

    2016-02-01

    Inland waters are important sites of nitrogen processing, and represent a significant component of the global budget of nitrous oxide, a powerful greenhouse gas. Measurements have focused on nitrogen-rich temperate rivers, with low-nitrogen freshwater systems at high latitudes receiving less attention. Here we measured surface water nitrous oxide partial pressures and calculated fluxes across 321 rivers, lakes and ponds in three boreal regions of Québec, Canada. Fluxes to the atmosphere ranged from -23.1 to 115.7 μmol m-2 d-1, with high variability among ecosystem types, regions and seasons. Surprisingly, over 40% of the systems sampled were under-saturated in nitrous oxide during the summer, and one region’s aquatic network was a net atmospheric sink. Fluxes could not be predicted from the relatively narrow range in nitrogen concentrations, but the aquatic systems acting as sinks tended to have lower pH, higher dissolved organic carbon and lower oxygen concentrations. Given the large variability in observed fluxes, we estimate that high-latitude aquatic networks may emit from -0.07 to 0.20 Tg N2O-N yr-1. The potential of boreal aquatic networks to act as net atmospheric nitrous oxide sinks highlights the extensive uncertainty in our understanding of global freshwater nitrous oxide budgets.

  5. Flow management for hydropower extirpates aquatic insects, undermining river food webs

    Science.gov (United States)

    Kennedy, Theodore; Muehlbauer, Jeffrey D.; Yackulic, Charles B.; Lytle, D.A.; Miller, S.A.; Dibble, Kimberly L.; Kortenhoeven, Eric W.; Metcalfe, Anya; Baxter, Colden V.

    2016-01-01

    Dams impound the majority of rivers and provide important societal benefits, especially daily water releases that enable on-peak hydroelectricity generation. Such “hydropeaking” is common worldwide, but its downstream impacts remain unclear. We evaluated the response of aquatic insects, a cornerstone of river food webs, to hydropeaking using a life history–hydrodynamic model. Our model predicts that aquatic-insect abundance will depend on a basic life-history trait—adult egg-laying behavior—such that open-water layers will be unaffected by hydropeaking, whereas ecologically important and widespread river-edge layers, such as mayflies, will be extirpated. These predictions are supported by a more-than-2500-sample, citizen-science data set of aquatic insects from the Colorado River in the Grand Canyon and by a survey of insect diversity and hydropeaking intensity across dammed rivers of the Western United States. Our study reveals a hydropeaking-related life history bottleneck that precludes viable populations of many aquatic insects from inhabiting regulated rivers.

  6. Kinesiological Analysis of Stationary Running Performed in Aquatic and Dry Land Environments

    Directory of Open Access Journals (Sweden)

    Lima Alberton Cristine

    2015-12-01

    Full Text Available The purpose of the present study was to analyze the electromyographic (EMG signals of the rectus femoris (RF, vastus lateralis (VL, semitendinosus (ST and short head of the biceps femoris (BF during the performance of stationary running at different intensities in aquatic and dry land environments. The sample consisted of 12 female volunteers who performed the stationary running exercise in aquatic and dry land environments at a submaximal cadence (80 beats·min-1 controlled by a metronome and at maximal velocity, with EMG signal measurements from the RF, VL, ST and BF muscles. The results showed a distinct pattern between environments for each muscle examined. For the submaximal cadence of 80 beats·min-1, there was a reduced magnitude of the EMG signal in the aquatic environment, except for the ST muscle, the pattern of which was similar in both environments. In contrast to the submaximal cadence, the pattern of the EMG signal from all of the muscles showed similar magnitudes for both environments and phases of movement at maximal velocity, except for the VL muscle. Therefore, the EMG signals from the RF, VL, ST and BF muscles of women during stationary running had different patterns of activation over the range of motion between aquatic and dry land environments for different intensities. Moreover, the neuromuscular responses of the lower limbs were optimized by an increase in intensity from submaximal cadence to maximal velocity.

  7. Transplanted aquatic mosses for monitoring trace metal mobilization in acidified streams of the Vosges Mountains, France

    Energy Technology Data Exchange (ETDEWEB)

    Mersch, J.; Guerold, F.; Rousselle, P.; Pihan, J.C. (Univ. of Metz (France))

    1993-08-01

    As a result of acid depositions, trace metals are mobilized from the soils to the aquatic environment. Especially in poorly mineralized waters, elevated metal concentrations may rapidly have adverse effects on aquatic organisms. In particular, it has been shown that aluminium, a key element in the acidification process, is a toxic cofactor for fish and other biota. An accurate assessment of this specific form of water pollution may not be possible when only based on analyses of single water samples. On the one hand, water metal concentrations are often close to the detection limit of usual analytical techniques, and on the other hand, levels in acidified streams undergo strong temporal variations caused by acid pulses following meteorological events such as heavy rainfall and snowmelt. Compared to water analyses, indirect monitoring methods provide undeniable advantages for assessing water contamination. Aquatic bryophytes, in particular, have been regarded as interesting indicator organisms for trace metal pollution. However, their use has mainly been restricted to the lower course of streams for evaluating the impact of industrial discharges. The purpose of this study was to test the suitability of transplanted aquatic mosses for monitoring aluminium and four other trace metals (copper, iron, lead and zinc) in the particular context of acidifed streams draining a forested headwater catchment. 15 refs., 2 figs., 2 tabs.

  8. Analysis on health monitoring results for raw aquatic foods in Henan Province in 2011%河南省2011年生食水产品监测结果分析

    Institute of Scientific and Technical Information of China (English)

    翟文慧; 王爱月; 张濛

    2013-01-01

    Objective:To understand the health situation of raw aquatic foods in Henan province,in order to guide consumpt-ion and prevent foodborne diseases.Methods:One hundred and ninety-two raw aquatic food samples were collected randomly from 73 restaurants in 18 cities in Henan Province,and tested for the items of aerobic bacterial count,enumeration of coliforms,four kinds of pathogenic bacteria,parasites' metacercariae,anisakis and 24 kinds of antibiotics according to the national standard.The testing results for raw aquatic foods were assessed according to the national standard methods and the No.193 and No.235 bulletin of the Ministry of Agriculture,while the microorganism items were assessed by Japanese standard and GB10136-2005.Results:The samples with all test items qualified accounted for 15.1%.The qualified rates of aerobic bacterial count,enumeration of coliforms,four kinds of pathogenic bacteria,parasites' metacercariae,anisakis and 24 kinds of antibiotics were 23.4%,25.5%,95.8%,100%,100% and 100% respectively.The detection rate of antibiotic was 5.73%.The difference of the qualified rates between different raw aquatic foods and various-size restaurants were not significant (P> 0.05).Conclusion:There exist common microbial contamination in raw aquatic foods in Henan Province.It is necessary to strengthen supervision on producing waters,transportation,storage and processing of aquatic food..%目的:了解河南省生食水产品卫生状况,指导消费,防止因食用生食水产品而引起食源性疾病.方法:随机采集河南省18个地市73家餐饮单位生食水产品192份,采用国家标准方法进行菌落总数、大肠菌群、致病菌、寄生虫囊蚴、异尖线虫和24种抗生素检测.按照国家标准及农业部193、235号公告对生食水产品进行评价,并将日本生食水产品卫生标准与GB10136-2005进行比较.结果:所检项目都合格的样品占总抽查量的15.1%,其中菌落总数、大肠菌

  9. SEAGRASS RHIZOSPHERE MICROBIAL COMMUNITIES

    Science.gov (United States)

    Devereux, Richard. 2005. Seagrass Rhizosphere Microbial Communities. In: Interactions Between Macro- and Microorganisms in Marine Sediments. E. Kristense, J.E. Kostka and R.H. Haese, Editors. American Geophysical Union, Washington, DC. p199-216. (ERL,GB 1213). Seagrasses ...

  10. PIXE analysis of chromium phytoaccumulation by the aquatic macrophytes Eicchornia crassipes

    International Nuclear Information System (INIS)

    The uptake of hexavalent chromium in free living floating aquatic macrophytes Eicchornia crassipes cultivated in non-toxic chromium-doped hydroponic solutions is presented. A Cr-uptake bioaccumulation experiment was carried out using healthy macrophytes grown in a temperature controlled greenhouse. Six samples of nutrient media and plants were collected during the 23 day experiment. Roots and leaves were acid digested with the addition of an internal Gallium standard, for thin film sample preparation and quantitative Cr analysis by PIXE method. The Cr6+ mass uptake by the macrophytes reached up to 70% of the initial concentration, comparable to former results and literature data. The Cr-uptake data were described using a non-structural first order kinetic model. Due to low cost and high removal efficiency, living aquatic macrophytes E. crassipes are a viable biosorbent in an artificial wetland of a water effluent treatment plant.

  11. La Popala creek: quality analysis of water from some physical - chemical, microbiological variables and aquatic macroinvertebrates

    International Nuclear Information System (INIS)

    The Popala creek supplies water to the people of Bolombolo in Venecia municipality in Antioquia, Colombia. In November 14th and 28th of 2009, four sampling station were located along the creek, to measure five sets of variables: physico- chemical, microbiological, aquatic macroinvertebrate, biological indicators and biotic index BMWP.Physico- chemical variables, aquatic macroinvertebrates and index BMWP indicate good environmental conditions in station 2, located about 150 m from the headwaters (station 1). On the other hand, Station 4, located near to the Cauca River, exhibits deterioration in water quality. Stations 3 and 4 displayed high levels of fecal coliforms. However, the samples taken from Bolombolo's water supply network indicate the water of the aqueduct is adequate for human consumption.

  12. PIXE analysis of chromium phytoaccumulation by the aquatic macrophytes Eicchornia crassipes

    Energy Technology Data Exchange (ETDEWEB)

    Espinoza-Quinones, F.R. [Department of Chemical Engineering - Postgraduate Program - NBQ, West Parana State University, Rua da Faculdade, 645, Jardim Santa Maria, 85903-000 Toledo, Parana (Brazil)], E-mail: f.espinoza@terra.com.br; Rizzutto, M.A.; Added, N.; Tabacniks, M.H. [Physics Institute, University of Sao Paulo, Rua do Matao s/n, Travessa R 187, 05508-900 Sao Paulo, SP (Brazil); Modenes, A.N.; Palacio, S.M.; Silva, E.A.; Rossi, F.L.; Martin, N.; Szymanski, N. [Department of Chemical Engineering - Postgraduate Program - NBQ, West Parana State University, Rua da Faculdade, 645, Jardim Santa Maria, 85903-000 Toledo, Parana (Brazil)

    2009-04-15

    The uptake of hexavalent chromium in free living floating aquatic macrophytes Eicchornia crassipes cultivated in non-toxic chromium-doped hydroponic solutions is presented. A Cr-uptake bioaccumulation experiment was carried out using healthy macrophytes grown in a temperature controlled greenhouse. Six samples of nutrient media and plants were collected during the 23 day experiment. Roots and leaves were acid digested with the addition of an internal Gallium standard, for thin film sample preparation and quantitative Cr analysis by PIXE method. The Cr{sup 6+} mass uptake by the macrophytes reached up to 70% of the initial concentration, comparable to former results and literature data. The Cr-uptake data were described using a non-structural first order kinetic model. Due to low cost and high removal efficiency, living aquatic macrophytes E. crassipes are a viable biosorbent in an artificial wetland of a water effluent treatment plant.

  13. High-resolution phylogenetic microbial community profiling

    Energy Technology Data Exchange (ETDEWEB)

    Singer, Esther; Coleman-Derr, Devin; Bowman, Brett; Schwientek, Patrick; Clum, Alicia; Copeland, Alex; Ciobanu, Doina; Cheng, Jan-Fang; Gies, Esther; Hallam, Steve; Tringe, Susannah; Woyke, Tanja

    2014-03-17

    The representation of bacterial and archaeal genome sequences is strongly biased towards cultivated organisms, which belong to merely four phylogenetic groups. Functional information and inter-phylum level relationships are still largely underexplored for candidate phyla, which are often referred to as microbial dark matter. Furthermore, a large portion of the 16S rRNA gene records in the GenBank database are labeled as environmental samples and unclassified, which is in part due to low read accuracy, potential chimeric sequences produced during PCR amplifications and the low resolution of short amplicons. In order to improve the phylogenetic classification of novel species and advance our knowledge of the ecosystem function of uncultivated microorganisms, high-throughput full length 16S rRNA gene sequencing methodologies with reduced biases are needed. We evaluated the performance of PacBio single-molecule real-time (SMRT) sequencing in high-resolution phylogenetic microbial community profiling. For this purpose, we compared PacBio and Illumina metagenomic shotgun and 16S rRNA gene sequencing of a mock community as well as of an environmental sample from Sakinaw Lake, British Columbia. Sakinaw Lake is known to contain a large age of microbial species from candidate phyla. Sequencing results show that community structure based on PacBio shotgun and 16S rRNA gene sequences is highly similar in both the mock and the environmental communities. Resolution power and community representation accuracy from SMRT sequencing data appeared to be independent of GC content of microbial genomes and was higher when compared to Illumina-based metagenome shotgun and 16S rRNA gene (iTag) sequences, e.g. full-length sequencing resolved all 23 OTUs in the mock community, while iTags did not resolve closely related species. SMRT sequencing hence offers various potential benefits when characterizing uncharted microbial communities.

  14. Antibacterial activity of aquatic gliding bacteria.

    Science.gov (United States)

    Sangnoi, Yutthapong; Anantapong, Theerasak; Kanjana-Opas, Akkharawit

    2016-01-01

    The study aimed to screen and isolate strains of freshwater aquatic gliding bacteria, and to investigate their antibacterial activity against seven common pathogenic bacteria. Submerged specimens were collected and isolated for aquatic gliding bacteria using four different isolation media (DW, MA, SAP2, and Vy/2). Gliding bacteria identification was performed by 16S rRNA gene sequencing and phylogenetic analysis. Crude extracts were obtained by methanol extraction. Antibacterial activity against seven pathogenic bacteria was examined by agar-well diffusion assay. Five strains of aquatic gliding bacteria including RPD001, RPD008, RPD018, RPD027 and RPD049 were isolated. Each submerged biofilm and plastic specimen provided two isolates of gliding bacteria, whereas plant debris gave only one isolate. Two strains of gliding bacteria were obtained from each DW and Vy/2 isolation medium, while one strain was obtained from the SAP2 medium. Gliding bacteria strains RPD001, RPD008 and RPD018 were identified as Flavobacterium anhuiense with 96, 82 and 96 % similarity, respectively. Strains RPD049 and RPD027 were identified as F. johnsoniae and Lysobacter brunescens, respectively, with similarity equal to 96 %. Only crude extract obtained from RPD001 inhibited growth of Listeria monocytogenes (MIC 150 µg/ml), Staphylococcus aureus (MIC 75 µg/ml) and Vibrio cholerae (MIC 300 µg/ml), but showed weak inhibitory effect on Salmonella typhimurium (MIC > 300 µg/ml). Gliding bacterium strain RPD008 should be considered to a novel genus separate from Flavobacterium due to its low similarity value. Crude extract produced by RPD001 showed potential for development as a broad antibiotic agent. PMID:26885469

  15. Ecotoxicological Assessment of Aquatic Genotoxicity Using the Comet Assay

    OpenAIRE

    KHUSNUL YAQIN

    2006-01-01

    Comet assay is a novel biological analysis, which is a sensitive, flexible, simple, rapid, and inexpensive method to assess aquatic genotoxicant. Since Singh and co-workers developed the method in 1988, its use has increased exponentially in various fields. This review discourses on the application of this assay in aquatic ecosystems. Various types of cells from various aquatic organisms have been tested by various genotoxicant both direct- and indirect-acting using the comet assay. The appli...

  16. Aquatic intervention in children with neuro-motor impairments

    OpenAIRE

    Getz, M.D.

    2006-01-01

    The present thesis addresses the influence of aquatic interventions on motor performance of children with neuro-motor deficiencies in a functional context. The theoretical framework is based on a functional approach in compliance to the International Classification of Function and Disability (ICF). Chapter 2 addresses the relationship between motor performance in the aquatic environment setting as measured by the Aquatic Independence Measure (AIM) to motor performance on land as measured by t...

  17. Implications of aquatic animal health for human health.

    OpenAIRE

    Dawe, C J

    1990-01-01

    Human health and aquatic animal health are organically related at three distinct interfaces. Aquatic animals serve as important contributors to the nutritional protein, lipid, and vitamin requirements of humans; as carriers and transmitters of many infectious and parasitic diseases to which humans are susceptible; and as indicators of toxic and carcinogenic substances that they can convey, in some part, from aquatic environments to man and other terrestrial animals. Transcending these relatio...

  18. Impact of Organic Contamination on Some Aquatic Organisms

    OpenAIRE

    Yasser, El-Nahhal; Shawkat, El-Najjar; Samir, Afifi

    2015-01-01

    Background: Contamination of water systems with organic compounds of agricultural uses pose threats to aquatic organisms. Carbaryl, chlorpyrifos, and diuron were considered as model aquatic pollutants in this study. The main objective of this study was to characterize the toxicity of organic contamination to two different aquatic organisms. Materials and Methods: Low concentrations (0.0–60 µmol/L) of carbaryl, diuron and very low concentration (0.0–0.14 µmol/L) of chlorpyrifos and their mixtu...

  19. Spreading of Oil Spill on Placid Aquatic Medium

    OpenAIRE

    Derrick O. NJOBUENWU; Millionaire F. N. ABOWEI

    2008-01-01

    Continuous research in the development of suitable predictive model is vital as the input of oil spills into the aquatic environment particularly in the Niger Delta area of Nigeria is alarming due to frequent oil spills. This eventually affects aquatic organisms and shoreline activities. This work developed an semi-empirical expression that can predict the horizontal spreading of Niger Delta Oil Spills (NDOS) on a placid water body using simple physical coefficients of the oil and the aquatic...

  20. Aquatic Models, Genomics and Chemical Risk Management§

    OpenAIRE

    Cheng, Keith C.; Hinton, David E.; Mattingly, Carolyn J.; Planchart, Antonio

    2011-01-01

    The 5th Aquatic Animal Models for Human Disease meeting follows four previous meetings (Hinton et al., 2009; Schmale et al., 2007; Schmale, 2004; Nairn et al., 2001) in which advances in aquatic animal models for human disease research were reported, and community discussion of future direction was pursued. At this meeting, discussion at a workshop entitled Bioinformatics and Computational Biology with Web-based Resources (20 September 2010) led to an important conclusion: Aquatic model resea...

  1. Aquatic indicator organisms as a tool to monitor discharges from nuclear power plants

    Energy Technology Data Exchange (ETDEWEB)

    Outola, Iisa; Vartti, Vesa-Pekka; Klemola, Seppo [STUK - Radiation and Nuclear Safety Authority, P.O. Box 14, 00881 Helsinki (Finland)

    2014-07-01

    There are four operating nuclear power plant units in Finland at two separate locations. The units started operation during 1977-1980. The surveillance of radioactive substances in the vicinities of the nuclear power plant is carried out under the permanent monitoring programs. Some 1000 samples are taken annually from the surroundings of the power plants to confirm that the discharges from the power plants are within permissible release limits and to monitor the dispersion of discharges in the environment. Aquatic indicator organisms (macro-algae, periphyton, mussels, crustacean, submerged aquatic plants) are included in the monitoring program. The indicator organisms are valuable monitoring objects both in normal and emergency situations because they accumulate effectively and often very rapidly radioactive substances from the medium. Six different species (Periphyton, Fucus vesiculosus, Myriophyllum spicatum, Potamogeton pectinatus, Saduria entomon, Macoma Baltica/Mytilus edulis) are collected regularly. Number of sampling location for each species varies from 1 to 7. Some species are collected continuously, some 1-2 times in a year. In this study we have evaluated the monitoring results for the aquatic indicator organisms for the period of 2005-2010 concerning concentration of discharge nuclides. Our aim was to answer the following questions using the monitoring data from aquatic organisms: 1) Which radionuclides are released to the marine environment and how often do we detect them? 2) How far from the nuclear power plants discharge radionuclides are detected? 3) How concentration of discharge radionuclides has changed with time in aquatic organisms? The number of discharge nuclides detected in the aquatic indicator samples was 11. Most of them were only detected in few samples, but {sup 58}Co, {sup 60}Co, {sup 54}Mn and {sup 110m}Ag were detected more frequently. Most of the observations above detection limits were made within the 5 km distance from the

  2. Aquatic indicator organisms as a tool to monitor discharges from nuclear power plants

    International Nuclear Information System (INIS)

    There are four operating nuclear power plant units in Finland at two separate locations. The units started operation during 1977-1980. The surveillance of radioactive substances in the vicinities of the nuclear power plant is carried out under the permanent monitoring programs. Some 1000 samples are taken annually from the surroundings of the power plants to confirm that the discharges from the power plants are within permissible release limits and to monitor the dispersion of discharges in the environment. Aquatic indicator organisms (macro-algae, periphyton, mussels, crustacean, submerged aquatic plants) are included in the monitoring program. The indicator organisms are valuable monitoring objects both in normal and emergency situations because they accumulate effectively and often very rapidly radioactive substances from the medium. Six different species (Periphyton, Fucus vesiculosus, Myriophyllum spicatum, Potamogeton pectinatus, Saduria entomon, Macoma Baltica/Mytilus edulis) are collected regularly. Number of sampling location for each species varies from 1 to 7. Some species are collected continuously, some 1-2 times in a year. In this study we have evaluated the monitoring results for the aquatic indicator organisms for the period of 2005-2010 concerning concentration of discharge nuclides. Our aim was to answer the following questions using the monitoring data from aquatic organisms: 1) Which radionuclides are released to the marine environment and how often do we detect them? 2) How far from the nuclear power plants discharge radionuclides are detected? 3) How concentration of discharge radionuclides has changed with time in aquatic organisms? The number of discharge nuclides detected in the aquatic indicator samples was 11. Most of them were only detected in few samples, but 58Co, 60Co, 54Mn and 110mAg were detected more frequently. Most of the observations above detection limits were made within the 5 km distance from the nuclear power plants

  3. Causes Of Microbial Carriers During Admission To Intensive Care Unit

    OpenAIRE

    Panagiotopoulou, Efthymia; Nteves, Ioannis; Kadda, Olga; Kapadohos, Theodore; Vasilopoulos, Georgios; Marvaki, Christina

    2016-01-01

    Introduction: The recording of microbial agent upon patients admission in the Intensive Care Unit (ICU) can be useful for the prevention and reduction of dispersion, forecasting new colonization or infection respectively bacteria and guide empirical antimicrobial therapy. Aim: The aim of the present study was to investigate the factors associated with microbial colonization of patients admitting to ICU. Material and Method: The studied sample consisted of 72 patients admitted to the I...

  4. Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome

    OpenAIRE

    Sergeant, Martin J.; Chrystala Constantinidou; Tristan A Cogan; Bedford, Michael R.; Penn, Charles W.; Pallen, Mark J.

    2014-01-01

    Chickens are major source of food and protein worldwide. Feed conversion and the health of chickens relies on the largely unexplored complex microbial community that inhabits the chicken gut, including the ceca. We have carried out deep microbial community profiling of the microbiota in twenty cecal samples via 16S rRNA gene sequences and an in-depth metagenomics analysis of a single cecal microbiota. We recovered 699 phylotypes, over half of which appear to represent previously unknown speci...

  5. Mangrove microbial diversity and the impact of trophic contamination

    OpenAIRE

    Bouchez, Agnès; Pascault, Noémie; Chardon, Cècile; Bouvy, Marc; Cecchi, Philippe; Lambs, Luc; Herteman, Mélanie; Fromard, François; Got, Patrice; Leboulanger, Christophe

    2013-01-01

    Mangroves are threatened ecosystems that provide numerous ecosystem services, especially through their wide biodiversity, and their bioremediation capacity is a challenging question in tropical areas. In a mangrove in Mayotte, we studied the potential role of microbial biofilm communities in removing nutrient loads from pre-treated wastewater. Microbial community samples were collected from tree roots, sediments, water, and from a colonization device, and their structure and dynamics were com...

  6. Use of Aeromonas spp. as General Indicators of Antimicrobial Susceptibility among Bacteria in Aquatic Environments in Thailand.

    Science.gov (United States)

    Usui, Masaru; Tagaki, Chie; Fukuda, Akira; Okubo, Torahiko; Boonla, Chanchai; Suzuki, Satoru; Seki, Kanako; Takada, Hideshige; Tamura, Yutaka

    2016-01-01

    Antimicrobials are widely used, not only for treating human infections, but also for treatment of livestock and in fish farms. Human habitats in Southeastern Asian countries are located in close proximity to aquatic environments. As such, the human populations within these regions are at risk of exposure to antimicrobial resistant bacteria, and thereby disseminating antimicrobial resistance genes (ARGs). In this study, we collected water samples from 15 sites (5 sites in Chao Phraya River, 2 sites at the mouth of Chao Phraya River, 3 sites in Ta Chin River, and 5 sites at city canals) and 12 sites (6 sites at city canals; 2 sites at chicken farms; 2 sites at pig farms; and 2 samples from sites at pig farms, which were subsequently treated at a biogas plant) in Thailand in 2013 and 2014, respectively. In total, 117 Aeromonas spp. were isolated from the water samples, and these organisms exhibited various antimicrobial susceptibility profiles. Notably, there was a significant correlation between the environmental concentration of tetracyclines and the rates of tetracycline resistance in the isolated Aeromonas spp.; however, both the concentration and rates of tetracycline resistance in samples derived from pig farms were higher than those of samples harvested from other aquatic environments. These findings suggest that the high concentrations of antimicrobials observed in these aquatic environments likely select for ARGs. Furthermore, they indicate that Aeromonas spp. comprise an effective marker for monitoring antimicrobial resistance in aquatic environments. PMID:27433156

  7. Use of Aeromonas spp. as General Indicators of Antimicrobial Susceptibility among Bacteria in Aquatic Environments in Thailand

    Science.gov (United States)

    Usui, Masaru; Tagaki, Chie; Fukuda, Akira; Okubo, Torahiko; Boonla, Chanchai; Suzuki, Satoru; Seki, Kanako; Takada, Hideshige; Tamura, Yutaka

    2016-01-01

    Antimicrobials are widely used, not only for treating human infections, but also for treatment of livestock and in fish farms. Human habitats in Southeastern Asian countries are located in close proximity to aquatic environments. As such, the human populations within these regions are at risk of exposure to antimicrobial resistant bacteria, and thereby disseminating antimicrobial resistance genes (ARGs). In this study, we collected water samples from 15 sites (5 sites in Chao Phraya River, 2 sites at the mouth of Chao Phraya River, 3 sites in Ta Chin River, and 5 sites at city canals) and 12 sites (6 sites at city canals; 2 sites at chicken farms; 2 sites at pig farms; and 2 samples from sites at pig farms, which were subsequently treated at a biogas plant) in Thailand in 2013 and 2014, respectively. In total, 117 Aeromonas spp. were isolated from the water samples, and these organisms exhibited various antimicrobial susceptibility profiles. Notably, there was a significant correlation between the environmental concentration of tetracyclines and the rates of tetracycline resistance in the isolated Aeromonas spp.; however, both the concentration and rates of tetracycline resistance in samples derived from pig farms were higher than those of samples harvested from other aquatic environments. These findings suggest that the high concentrations of antimicrobials observed in these aquatic environments likely select for ARGs. Furthermore, they indicate that Aeromonas spp. comprise an effective marker for monitoring antimicrobial resistance in aquatic environments. PMID:27433156

  8. Patterning and predicting aquatic insect richness in four West-African coastal rivers using artificial neural networks

    Directory of Open Access Journals (Sweden)

    Edia E.O.

    2010-10-01

    Full Text Available Despite their importance in stream management, the aquatic insect assemblages are still little known in West Africa. This is particularly true in South-Eastern Ivory Coast, where aquatic insect assemblages were hardly studied. We therefore aimed at characterising aquatic insect assemblages on four coastal rivers in South-Eastern Ivory Coast. Patterning aquatic insect assemblages was achieved using a Self-Organizing Map (SOM, an unsupervised Artificial Neural Networks (ANN method. This method was applied to pattern the samples based on the richness of five major orders of aquatic insects (Diptera, Ephemeroptera, Coleoptera, Trichoptera and Odonata. This permitted to identify three clusters that were mainly related to the local environmental status of sampling sites. Then, we used the environmental characteristics of the sites to predict, using a multilayer perceptron neural network (MLP, trained by BackPropagation algorithm (BP, a supervised ANN, the richness of the five insect orders. The BP showed high predictability (0.90 for both Diptera and Trichoptera, 0.84 for both Coleoptera and Odonata, 0.69 for Ephemeroptera. The most contributing variables in predicting the five insect order richness were pH, conductivity, total dissolved solids, water temperature, percentage of rock and the canopy. This underlines the crucial influence of both instream characteristics and riparian context.

  9. Actinide elements in aquatic and terrestrial environments

    International Nuclear Information System (INIS)

    Progress is reported on the following research projects: water-sediment interactions of U, Pu, Am, and Cm; relative availability of actinide elements from abiotic to aquatic biota; comparative uptake of transuranic elements by biota bordering Pond 3513; metabolic reduction of 239Np from Np(V) to Np(IV) in cotton rats; evaluation of hazards associated with transuranium releases to the biosphere; predicting Pu in bone; adsorption--solubility--complexation phenomena in actinide partitioning between sorbents and solution; comparative soil extraction data; and comparative plant uptake data

  10. Uranium accumulation by aquatic macrophyte, Pistia stratiotes

    International Nuclear Information System (INIS)

    Uranium accumulation by aquatic macrophyte, Pistia stratiotes from aqueous solution was investigated in laboratory condition. The objective was to evaluate the uranium accumulation potential and adopt the plant in uranium containing medium to improve its uptake capacity. The plant was found to tolerate and grow in the pH range of 3-7. Accumulation of uranium improved with increasing pH and the plant could remove 70% uranium from the medium (20 mg/L) within 24 hours of incubation at pH 5-6. Uptake of uranium on either side of this pH range decreased

  11. Aquatic Exercise and Thermoregulation in Pregnancy.

    Science.gov (United States)

    Soultanakis, Helen N

    2016-09-01

    Aquatic exercise, in a general sense, is any type of movement performed in the water for the purpose of improving health and fitness. Water, with its properties, provides buoyancy to lighten the "load" of pregnancy, hydrostatic pressure to alleviate pregnancy-induced edema, and many other benefits. Sports in extreme temperatures may involve some risks. The fact that a person's conductivity increases about 25 times in water comes with a great loss, which is the depression of the evaporative mechanism. Altered thermal control mechanisms in water, both in the gravid and the nongravid state, will be addressed in this review. convenience. PMID:27152529

  12. Aquatic ecotoxicological indicators in life cycle assessment

    DEFF Research Database (Denmark)

    Pennington, David W.; Payet, Jerome; Hauschild, Michael Zwicky

    2004-01-01

    This paper compares available options for the aquatic ecotoxicological effect factor component in life cycle assessment (LCA). The effect factor is expressed here as the change in risk per unit change in cumulative exposure, ƒ´Effect/ƒ´Exposure. The comparison is restricted to approaches linked...... basis represents the best available practice for use in LCA at this time, ƒ´PAFms/ƒ´C = 0.5/HC50; where ƒ´PAFms is the change in the (Potentially Affected) Fraction (PAF) of species that experiences an Increase in exposure above a specified effect level, accounting for the presence of complex background...

  13. Aquatic species project report: FY 1991

    Energy Technology Data Exchange (ETDEWEB)

    Brown, L.M. (National Renewable Energy Lab., Golden, CO (United States)); Sprague, S. (USDOE, Washington, DC (United States))

    1992-04-01

    This report summarizes the progress and research accomplishments of the Aquatic Species Project, which is managed by the National Renewable Energy Laboratory for the US Department of Energy. The project is focused on applying genetic engineering techniques to enhance the lipid, or oil, production of microalgae. Those lipids can be extracted and processed into high-energy liquid fuels such as diesel. Because microalgae require carbon dioxide, a major greenhouse'' gas, as a nutrient, project researchers also study the role that microalgae could play in a possible global climate change mitigation strategy.

  14. Aquatic species project report: FY 1991

    Energy Technology Data Exchange (ETDEWEB)

    Brown, L.M. [National Renewable Energy Lab., Golden, CO (United States); Sprague, S. [USDOE, Washington, DC (United States)

    1992-04-01

    This report summarizes the progress and research accomplishments of the Aquatic Species Project, which is managed by the National Renewable Energy Laboratory for the US Department of Energy. The project is focused on applying genetic engineering techniques to enhance the lipid, or oil, production of microalgae. Those lipids can be extracted and processed into high-energy liquid fuels such as diesel. Because microalgae require carbon dioxide, a major ``greenhouse`` gas, as a nutrient, project researchers also study the role that microalgae could play in a possible global climate change mitigation strategy.

  15. HAZARDOUS MATERIALS IN AQUATIC ENVIRONMENTS OF THE MISSISSIPPI RIVER BASIN

    Energy Technology Data Exchange (ETDEWEB)

    John A. McLachlan

    2003-12-01

    In December 1992, the CBR was awarded a five-year grant of $25M from the US Department of Energy Office of Environmental Management (DOE-EM) to study pollution in the Mississippi River system. The ''Hazardous Materials in Aquatic Environments of the Mississippi River Basin'' project was an interdisciplinary, collaborative research and education project aimed at elucidating the nature and magnitude of toxic materials that contaminate aquatic environments. This project funded 15 collaborative cluster multi-year projects and 41 one-year initiation projects out of 165 submitted research proposals. This project was carried out by 134 research and technical support faculty from Xavier University (School of Arts and Sciences, and College of Pharmacy) and Tulane University (Schools of Liberal Arts and Sciences, Engineering, Medicine, and Public Health and Tropical Medicine), and 173 publications and 140 presentations were produced. More than 100 graduate and undergraduate students were trained through these collaborative cluster and initiation research projects. Nineteen Tulane graduate students received partial funding to conduct their own competitively-chosen research projects, and 28 Xavier undergraduate LIFE Scholars and 30 LIFE Interns were supported with DOE funding to conduct their mentored research projects. Studies in this project have defined: (1) the complex interactions that occur during the transport of contaminants, (2) the actual and potential impact on ecological systems and health, and (3) the mechanisms through which these impacts might be remediated. The bayou and spoil banks of Bayou Trepagnier were mapped and analyzed in terms of risks associated with the levels of hydrocarbons and metals at specific sample sites. Data from contaminated sample sites have been incorporated into a large database and used in GIS analyses to track the fate and transport of heavy metals from spoil banks into the surrounding marsh. These data are crucial

  16. Microbially mediated detrital food web: The link between mangroves and coastal aquatic animal communities

    Digital Repository Service at National Institute of Oceanography (India)

    RaghuKumar, S.

    -organisms and is biochemically transformed. (3) Detritus forms an important food source of many marine animals. These aspects are considered in detail here, with particular emphasis on the mangroves....

  17. In Situ Treatment of PCBs by Anaerobic Microbial Dechlorination in Aquatic Sediment: Are We There Yet?

    OpenAIRE

    Sowers, Kevin R.; May, Harold D.

    2012-01-01

    The remediation of PCBs in soils and sediments remains a particularly difficult problem to solve. The possibility of in situ degradation by microorganisms has been pursued for many years since this approach has the potential to provide a cost-effective and environmentally sustainable alternative to dredging for treatment of PCB impacted sites. Because PCBs are hydrophobic and partition into organic material they accumulate in anoxic environments well poised to support anaerobic dechlorination...

  18. Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment.

    Science.gov (United States)

    Ishii, Shun'ichi; Suzuki, Shino; Norden-Krichmar, Trina M; Nealson, Kenneth H; Sekiguchi, Yuji; Gorby, Yuri A; Bretschger, Orianna

    2012-01-01

    Microbial fuel cells (MFCs) are devices that exploit microorganisms as biocatalysts to recover energy from organic matter in the form of electricity. One of the goals of MFC research is to develop the technology for cost-effective wastewater treatment. However, before practical MFC applications are implemented it is important to gain fundamental knowledge about long-term system performance, reproducibility, and the formation and maintenance of functionally-stable microbial communities. Here we report findings from a MFC operated for over 300 days using only primary clarifier effluent collected from a municipal wastewater treatment plant as the microbial resource and substrate. The system was operated in a repeat-batch mode, where the reactor solution was replaced once every two weeks with new primary effluent that consisted of different microbial and chemical compositions with every batch exchange. The turbidity of the primary clarifier effluent solution notably decreased, and 97% of biological oxygen demand (BOD) was removed after an 8-13 day residence time for each batch cycle. On average, the limiting current density was 1000 mA/m(2), the maximum power density was 13 mW/m(2), and coulombic efficiency was 25%. Interestingly, the electrochemical performance and BOD removal rates were very reproducible throughout MFC operation regardless of the sample variability associated with each wastewater exchange. While MFC performance was very reproducible, the phylogenetic analyses of anode-associated electricity-generating biofilms showed that the microbial populations temporally fluctuated and maintained a high biodiversity throughout the year-long experiment. These results suggest that MFC communities are both self-selecting and self-optimizing, thereby able to develop and maintain functional stability regardless of fluctuations in carbon source(s) and regular introduction of microbial competitors. These results contribute significantly toward the practical application

  19. Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment.

    Directory of Open Access Journals (Sweden)

    Shun'ichi Ishii

    Full Text Available Microbial fuel cells (MFCs are devices that exploit microorganisms as biocatalysts to recover energy from organic matter in the form of electricity. One of the goals of MFC research is to develop the technology for cost-effective wastewater treatment. However, before practical MFC applications are implemented it is important to gain fundamental knowledge about long-term system performance, reproducibility, and the formation and maintenance of functionally-stable microbial communities. Here we report findings from a MFC operated for over 300 days using only primary clarifier effluent collected from a municipal wastewater treatment plant as the microbial resource and substrate. The system was operated in a repeat-batch mode, where the reactor solution was replaced once every two weeks with new primary effluent that consisted of different microbial and chemical compositions with every batch exchange. The turbidity of the primary clarifier effluent solution notably decreased, and 97% of biological oxygen demand (BOD was removed after an 8-13 day residence time for each batch cycle. On average, the limiting current density was 1000 mA/m(2, the maximum power density was 13 mW/m(2, and coulombic efficiency was 25%. Interestingly, the electrochemical performance and BOD removal rates were very reproducible throughout MFC operation regardless of the sample variability associated with each wastewater exchange. While MFC performance was very reproducible, the phylogenetic analyses of anode-associated electricity-generating biofilms showed that the microbial populations temporally fluctuated and maintained a high biodiversity throughout the year-long experiment. These results suggest that MFC communities are both self-selecting and self-optimizing, thereby able to develop and maintain functional stability regardless of fluctuations in carbon source(s and regular introduction of microbial competitors. These results contribute significantly toward the

  20. Bruce nuclear power development (BNPD) postoperational aquatic studies

    International Nuclear Information System (INIS)

    This report summarizes the results of three years of postoperational aquatic study conducted between 1979 and 1981 at the Bruce Nuclear Power Development site. An increase in the rate of organic and inorganic sedimentation during the summer was noted, and was possibly related to construction activity at the Bruce GS 'B' intake site. Vertical thermal stratification persisted later in the year at the 7 m contour of Bruce GS 'A' discharge than at other locations sampled. Water quality conditions reflected the oliogtrophic state of Lake Huron. Several changes were noted in the biotic community. The taxonomic composition of attached algae, zooplankton and benthic macroinvertebrates varied between sampling years. The number of common naids, amphipods and the trichopteran Cheumatopsyche increased substantially in the 1981 rock cage collections. The relative abundance of adult walleye, channel catfish and round whitefish in gill nets increased, with the former two species being more abundant (15 fish per net in September, 1980, and 33 fish per net in July, 1981, respectively) at the 3 m contour of the Bruce GS 'A' discharge transect than at other shoreline sampling locations