Background paper on aquaculture research

DEFF Research Database (Denmark)

Wenblad, Axel; Jokumsen, Alfred; Eskelinen, Unto

due to the availability of vast water resources of good quality (both marine and fresh water), a high veterinary status and generally well developed public infrastructure. Swedish aquaculture has the potential to develop into a green business producing environmentally sustainable healthy food with low...... vattenbruket and the strategy Svenskt vattenbruk – en grön näring på blå åkrar, Strategi 2012–2020. Implementing the strategy will require a real management of aquaculture that secures the balance between responsibility for the environment and development of aquaculture production. For a significant......, products, etc. 2. Environmental efficient production with trapping of solid waste and balanced nutrient management (recirculation technology, waste heat/green energy/integrated production systems). 3. Policy instruments: legislation, economic incentives, socioeconomic...

Coordinated effort to advance genomes-to-phenomes through the integration of bioinformatics with aquaculture research

Science.gov (United States)

Aquaculture is the fastest growing food production system in the world. The research program at the USDA-ARS-SNARC strives to improve the efficiency and sustainability of warmwater U.S. aquaculture. SNARC scientists have impacted the catfish (#1 U.S. aquaculture industry), tilapia (#3) and hybrid st...

Community-based technology transfer in rural aquaculture: the case of mudcrab Scylla serrata nursery in ponds in Northern Samar, Central Philippines.

Science.gov (United States)

Baticados, Didi B; Agbayani, Renato F; Quinitio, Emilia T

2014-12-01

Finding aquaculture development approaches to open up livelihood opportunities for the rural poor and in mainstreaming smallholder fish farmers to reduce poverty remain a challenge. This paper examines the community-based technology transfer mechanism of mudcrab nursery in ponds and its socioeconomic impacts on smallholder mudcrab growers in Northern Samar, Philippines. Results indicated that the technology is a viable enterprise done by a straight culture system method, which is the rearing of crablets from 4.0 cm for 42 days, or by-phases. However, technology adoption hinges on many factors like area ownership, farm distance from household, and market including the type of strategy needed to enhance technology uptake. Collaboration among research and development institutions and local partners is critical in training and empowering rural communities to adopt aquaculture technologies.

Aquaculture Information Package

Energy Technology Data Exchange (ETDEWEB)

Boyd, T.; Rafferty, K. [editors

1998-01-01

This package of information is intended to provide background to developers of geothermal aquaculture projects. The material is divided into eight sections and includes information on market and price information for typical species, aquaculture water quality issues, typical species culture information, pond heat loss calculations, an aquaculture glossary, regional and university aquaculture offices and state aquaculture permit requirements.

Furthering knowledge of seaweed growth and development to facilitate sustainable aquaculture.

Science.gov (United States)

Charrier, Bénédicte; Abreu, Maria Helena; Araujo, Rita; Bruhn, Annette; Coates, Juliet C; De Clerck, Olivier; Katsaros, Christos; Robaina, Rafael R; Wichard, Thomas

2017-12-01

Macroalgae (seaweeds) are the subject of increasing interest for their potential as a source of valuable, sustainable biomass in the food, feed, chemical and pharmaceutical industries. Compared with microalgae, the pace of knowledge acquisition in seaweeds is slower despite the availability of whole-genome sequences and model organisms for the major seaweed groups. This is partly a consequence of specific hurdles related to the large size of these organisms and their slow growth. As a result, this basic scientific field is falling behind, despite the societal and economic importance of these organisms. Here, we argue that sustainable management of seaweed aquaculture requires fundamental understanding of the underlying biological mechanisms controlling macroalgal life cycles - from the production of germ cells to the growth and fertility of the adult organisms - using diverse approaches requiring a broad range of technological tools. This Viewpoint highlights several examples of basic research on macroalgal developmental biology that could enable the step-changes which are required to adequately meet the demands of the aquaculture sector. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Aquaculture information package

Energy Technology Data Exchange (ETDEWEB)

Boyd, T.; Rafferty, K.

1998-08-01

This package of information is intended to provide background information to developers of geothermal aquaculture projects. The material is divided into eight sections and includes information on market and price information for typical species, aquaculture water quality issues, typical species culture information, pond heat loss calculations, an aquaculture glossary, regional and university aquaculture offices and state aquaculture permit requirements. A bibliography containing 68 references is also included.

Antimicrobial use and resistance in aquaculture: findings of a globally administered survey of aquaculture-allied professionals.

Science.gov (United States)

Tuševljak, N; Dutil, L; Rajić, A; Uhland, F C; McClure, C; St-Hilaire, S; Reid-Smith, R J; McEwen, S A

2013-09-01

There is limited published information regarding antimicrobial use (AMU) and antimicrobial resistance (AMR) in aquaculture. Our objective was to determine the opinions of aquaculture-allied professionals around the world on the frequency of AMU and AMR in common aquatic species. The study questionnaire included five sections: respondent demographics, extent of AMU in aquaculture, frequency of observations of AMR in aquaculture, AMR monitoring and surveillance and antimicrobial susceptibility testing in various jurisdictions. It was administered in English and Spanish to 604 professionals in 25 countries and with varying expertise in aquaculture. The response rate was 33% (199/604). Over half of the participants had >10 years of experience in aquaculture: 70% (140/199) were involved in fish health/clinical work and their primary experience was with salmon, tilapia, trout, shrimp (including prawn) and/or catfish. Tetracycline use was reported by 28%, 46%, 18%, 37% and 9% of respondents working with catfish, salmon, tilapia, trout and shrimp, respectively. Resistance to tetracycline in one or more species of bacteria was reported as 'frequent-to-almost always' for the same aquaculture species by 39%, 28%, 17%, 52% and 36% of respondents, respectively. 'Frequent-to-almost always' use of quinolone was reported by 70% (32/46) and 67% (8/12) of respondents from the United States and Canada, respectively, where quinolone products are not approved for aquaculture, and extra-label fluoroquinolone use is either prohibited (United States) or discouraged (Canada). Similar frequencies of quinolone use were also reported by the majority of respondents from Europe [70% (7/10)] and Asia [90% (9/10)] where labelled indications exist. This baseline information can be used to prioritize research or surveillance for AMU and AMR in aquaculture. © 2012 Blackwell Verlag GmbH.

Aquaculture in the ecosystem

National Research Council Canada - National Science Library

Holmer, M; Black, K; Duarte, C.M; Marba, N; Kakakassis, I

2008-01-01

... aquaculture is one of the fastest growing industries in the world, comparable to the computer technology industry (Chapters 9 and 10). The demand for marine products is controlled by a complexity of factors in our society, not least the increasing human population and the increasing global affluence that allows the consumer to buy higher price...

Offshore Aquaculture Development in Ecuador

Directory of Open Access Journals (Sweden)

Julio López Alvarado

2016-03-01

Full Text Available Ecuador has a long tradition in aquaculture, mainly related to the cultivation of shrimp and tilapia in earthen ponds. Land-based production methods have a large environmental, economic and social impact due to the extensive use of land and its effects on the ecosystems. In order to increase the production of fish without further land use and with a lower environmental impact, a good alternative is the culture of fish in floating cages, adopting technologies used successfully in many other countries. This article analyses the current situation of offshore aquaculture (the production of fish and other aquatic organisms in the open sea in Ecuador, and the prospects for the future of this sector in the country.

Problems of large-scale vertically-integrated aquaculture

Energy Technology Data Exchange (ETDEWEB)

Webber, H H; Riordan, P F

1976-01-01

The problems of vertically-integrated aquaculture are outlined; they are concerned with: species limitations (in the market, biological and technological); site selection, feed, manpower needs, and legal, institutional and financial requirements. The gaps in understanding of, and the constraints limiting, large-scale aquaculture are listed. Future action is recommended with respect to: types and diversity of species to be cultivated, marketing, biotechnology (seed supply, disease control, water quality and concerted effort), siting, feed, manpower, legal and institutional aids (granting of water rights, grants, tax breaks, duty-free imports, etc.), and adequate financing. The last of hard data based on experience suggests that large-scale vertically-integrated aquaculture is a high risk enterprise, and with the high capital investment required, banks and funding institutions are wary of supporting it. Investment in pilot projects is suggested to demonstrate that large-scale aquaculture can be a fully functional and successful business. Construction and operation of such pilot farms is judged to be in the interests of both the public and private sector.

Nitrous oxide (N2O) emission from aquaculture: a review.

Science.gov (United States)

Hu, Zhen; Lee, Jae Woo; Chandran, Kartik; Kim, Sungpyo; Khanal, Samir Kumar

2012-06-19

Nitrous oxide (N(2)O) is an important greenhouse gas (GHG) which has a global warming potential 310 times that of carbon dioxide (CO(2)) over a hundred year lifespan. N(2)O is generated during microbial nitrification and denitrification, which are common in aquaculture systems. To date, few studies have been conducted to quantify N(2)O emission from aquaculture. Additionally, very little is known with respect to the microbial pathways through which N(2)O is formed in aquaculture systems. This review suggests that aquaculture can be an important anthropogenic source of N(2)O emission. The global N(2)O-N emission from aquaculture in 2009 is estimated to be 9.30 × 10(10) g, and will increase to 3.83 × 10(11)g which could account for 5.72% of anthropogenic N(2)O-N emission by 2030 if the aquaculture industry continues to increase at the present annual growth rate (about 7.10%). The possible mechanisms and various factors affecting N(2)O production are summarized, and two possible methods to minimize N(2)O emission, namely aquaponic and biofloc technology aquaculture, are also discussed. The paper concludes with future research directions.

Aquaculture; Acquacoltura

Energy Technology Data Exchange (ETDEWEB)

De Murtas, I D [ENEA, Centro Ricerche Casaccia, Rome (Italy). Dipt. Ambiente

1998-12-01

This paper attempts an overview of the progress made in the field of aquaculture. Aquaculture is a system of techniques strongly influenced by natural environmental conditions. Aquaculture as a biological technique oriented towards the production of useful aquatic organisms, is reaching a stage of consolidation which will place it on an equal footing which agriculture and animal husbandry. Aquaculture provides important economic and nutritional benefits to many regions of developing world. In 1994, over 90 percent of total aquaculture production was in Asia, with China, India, Japan, Indonesia, Thailand, Philippines and Republic of Korea as the seven leader producers. [Italiano] L`acquacoltura, vale a dire l`arte di riprodurre artificialmente pesci, alghe, molluschi e crostacei ed altri organismi acquatici utili all`uomo, si presenta oggi come un`attivita` di assoluto rilievo nell`insieme dei vari comparti di produzione alimentare. L`aumento della produzione e` costante anche se cinque paesi asiatici (Cina, India, Giappone, Filippine e Corea del Sud) contribuiscono per l`80% al volume della produzione mondiale. Nel presente lavoro vengono descritti lo stato dell`acquacoltura e della maricoltura nel mondo e le filiere di allevamento delle principali specie.

PROTEOMICS in aquaculture: applications and trends.

Science.gov (United States)

Rodrigues, Pedro M; Silva, Tomé S; Dias, Jorge; Jessen, Flemming

2012-07-19

Over the last forty years global aquaculture presented a growth rate of 6.9% per annum with an amazing production of 52.5 million tonnes in 2008, and a contribution of 43% of aquatic animal food for human consumption. In order to meet the world's health requirements of fish protein, a continuous growth in production is still expected for decades to come. Aquaculture is, though, a very competitive market, and a global awareness regarding the use of scientific knowledge and emerging technologies to obtain a better farmed organism through a sustainable production has enhanced the importance of proteomics in seafood biology research. Proteomics, as a powerful comparative tool, has therefore been increasingly used over the last decade to address different questions in aquaculture, regarding welfare, nutrition, health, quality, and safety. In this paper we will give an overview of these biological questions and the role of proteomics in their investigation, outlining the advantages, disadvantages and future challenges. A brief description of the proteomics technical approaches will be presented. Special focus will be on the latest trends related to the aquaculture production of fish with defined nutritional, health or quality properties for functional foods and the integration of proteomics techniques in addressing this challenging issue. Copyright © 2012 Elsevier B.V. All rights reserved.

A Study of the Aquaculture Industry in Texas to Assist in Establishing Aquaculture as a Course Offering in Agricultural Science and Technology. Final Report.

Science.gov (United States)

Dillingham, John; And Others

A 1989-90 project determined the knowledge and skills necessary for employment in the aquaculture industry. The study identified technical materials and other resources available in private industry and higher education institutions. Two surveys determined the status of aquaculture in Texas school districts and identified tasks performed by…

Genome technologies and personalized dental medicine.

Science.gov (United States)

Eng, G; Chen, A; Vess, T; Ginsburg, G S

2012-04-01

The addition of genomic information to our understanding of oral disease is driving important changes in oral health care. It is anticipated that genome-derived information will promote a deeper understanding of disease etiology and permit earlier diagnosis, allowing for preventative measures prior to disease onset rather than treatment that attempts to repair the diseased state. Advances in genome technologies have fueled expectations for this proactive healthcare approach. Application of genomic testing is expanding and has already begun to find its way into the practice of clinical dentistry. To take full advantage of the information and technologies currently available, it is vital that dental care providers, consumers, and policymakers be aware of genomic approaches to understanding of oral diseases and the application of genomic testing to disease diagnosis and treatment. Ethical, legal, clinical, and educational initiatives are also required to responsibly incorporate genomic information into the practice of dentistry. This article provides an overview of the application of genomic technologies to oral health care and introduces issues that require consideration if we are to realize the full potential of genomics to enable the practice of personalized dental medicine. © 2011 John Wiley & Sons A/S.

Human genome project: revolutionizing biology through leveraging technology

Science.gov (United States)

Dahl, Carol A.; Strausberg, Robert L.

1996-04-01

The Human Genome Project (HGP) is an international project to develop genetic, physical, and sequence-based maps of the human genome. Since the inception of the HGP it has been clear that substantially improved technology would be required to meet the scientific goals, particularly in order to acquire the complete sequence of the human genome, and that these technologies coupled with the information forthcoming from the project would have a dramatic effect on the way biomedical research is performed in the future. In this paper, we discuss the state-of-the-art for genomic DNA sequencing, technological challenges that remain, and the potential technological paths that could yield substantially improved genomic sequencing technology. The impact of the technology developed from the HGP is broad-reaching and a discussion of other research and medical applications that are leveraging HGP-derived DNA analysis technologies is included. The multidisciplinary approach to the development of new technologies that has been successful for the HGP provides a paradigm for facilitating new genomic approaches toward understanding the biological role of functional elements and systems within the cell, including those encoded within genomic DNA and their molecular products.

biotechnology in aquaculture: prospects and challenges

African Journals Online (AJOL)

JOSEPH

Fish farming is the world's fastest-growing sector of agricultural business. ... history of application: e.g. fertilization of ponds to increase feed availability. ... significant advances in the genetic improvement of Tilapia used in aquaculture in recent ... Vaccines: Modern technology is also of great value in the field of vaccines and.

Optimizing nitrate removal in woodchip beds treating aquaculture effluents

DEFF Research Database (Denmark)

von Ahnen, Mathis; Pedersen, Per Bovbjerg; Hoffmann, Carl Christian

2016-01-01

Nitrate is typically removed from aquaculture effluents using heterotrophic denitrification reactors. Heterotrophic denitrification reactors, however, require a constant input of readily available organic carbon (C) sources which limits their application in many aquaculture systems for practical...... and/or economic reasons.A potential alternative technology for removing nitrate currently applied for treating surface and drainage water is based on using wood by-products as a carbon source for denitrification. Using lab-scale horizontal-flow woodchip filters, the current study investigated...... the potential of optimizing woodchip reactors for treating aquaculture effluent. A central composite design (CCD) was applied to assess the effects of simultaneously changing the empty bed contact time (EBCTs of 5.0-15.0 h; corresponding to theoretical hydraulic retention times of 3.3-9.9 h) and bicarbonate...

Dependency on aquaculture in northern Vietnam

DEFF Research Database (Denmark)

Le Minh, Hanh; Phan, Van Thi; Nghia, Nguyen Huu

2017-01-01

a substantial reliance on aquaculture of farmers in the study area with at least half of their income generated by aquaculture. Our analyses highlight that the educational background of farmers explain their engagement in aquaculture better than how long they have worked as aquaculture farmers. Freshwater fish...... the dependence on aquaculture in these two provinces and amongst farmers specializing in shrimp and freshwater fish production, respectively. Further, we tested the ability of different socio-economic variables to explain the observed reliance on aquaculture using an ANCOVA model. The study identifies...

The growth of finfish in global open-ocean aquaculture under climate change.

Science.gov (United States)

Klinger, Dane H; Levin, Simon A; Watson, James R

2017-10-11

Aquaculture production is projected to expand from land-based operations to the open ocean as demand for seafood grows and competition increases for inputs to land-based aquaculture, such as freshwater and suitable land. In contrast to land-based production, open-ocean aquaculture is constrained by oceanographic factors, such as current speeds and seawater temperature, which are dynamic in time and space, and cannot easily be controlled. As such, the potential for offshore aquaculture to increase seafood production is tied to the physical state of the oceans. We employ a novel spatial model to estimate the potential of open-ocean finfish aquaculture globally, given physical, biological and technological constraints. Finfish growth potential for three common aquaculture species representing different thermal guilds-Atlantic salmon ( Salmo salar ), gilthead seabream ( Sparus aurata ) and cobia ( Rachycentron canadum )-is compared across species and regions and with climate change, based on outputs of a high-resolution global climate model. Globally, there are ample areas that are physically suitable for fish growth and potential expansion of the nascent aquaculture industry. The effects of climate change are heterogeneous across species and regions, but areas with existing aquaculture industries are likely to see increases in growth rates. In areas where climate change results in reduced growth rates, adaptation measures, such as selective breeding, can probably offset potential production losses. © 2017 The Author(s).

Strategies for implementing genomic selection in family-based aquaculture breeding schemes: double haploid sib test populations

Directory of Open Access Journals (Sweden)

Nirea Kahsay G

2012-10-01

Full Text Available Abstract Background Simulation studies have shown that accuracy and genetic gain are increased in genomic selection schemes compared to traditional aquaculture sib-based schemes. In genomic selection, accuracy of selection can be maximized by increasing the precision of the estimation of SNP effects and by maximizing the relationships between test sibs and candidate sibs. Another means of increasing the accuracy of the estimation of SNP effects is to create individuals in the test population with extreme genotypes. The latter approach was studied here with creation of double haploids and use of non-random mating designs. Methods Six alternative breeding schemes were simulated in which the design of the test population was varied: test sibs inherited maternal (Mat, paternal (Pat or a mixture of maternal and paternal (MatPat double haploid genomes or test sibs were obtained by maximum coancestry mating (MaxC, minimum coancestry mating (MinC, or random (RAND mating. Three thousand test sibs and 3000 candidate sibs were genotyped. The test sibs were recorded for a trait that could not be measured on the candidates and were used to estimate SNP effects. Selection was done by truncation on genome-wide estimated breeding values and 100 individuals were selected as parents each generation, equally divided between both sexes. Results Results showed a 7 to 19% increase in selection accuracy and a 6 to 22% increase in genetic gain in the MatPat scheme compared to the RAND scheme. These increases were greater with lower heritabilities. Among all other scenarios, i.e. Mat, Pat, MaxC, and MinC, no substantial differences in selection accuracy and genetic gain were observed. Conclusions In conclusion, a test population designed with a mixture of paternal and maternal double haploids, i.e. the MatPat scheme, increases substantially the accuracy of selection and genetic gain. This will be particularly interesting for traits that cannot be recorded on the

Proteomics and its applications to aquaculture in China: infection, immunity, and interaction of aquaculture hosts with pathogens.

Science.gov (United States)

Peng, Xuan-Xian

2013-01-01

China is the largest fishery producer worldwide in term of its aquaculture output, and plays leading and decisive roles in international aquaculture development. To improve aquaculture output further and promote aquaculture business development, infectious diseases and immunity of fishes and other aquaculture species must be studied. In this regard, aquaculture proteomics has been widely carried out in China to get a better understanding of aquaculture host immunity and microbial pathogenesis as well as host-pathogen interactions, and to identify novel disease targets and vaccine candidates for therapeutic interventions. These proteomics studies include development of novel methods, assays, and advanced concepts in order to characterize proteomics mechanisms of host innate immune defense and microbial pathogenesis. This review article summarizes some recently published technical approaches and their applications to aquaculture proteomics with an emphasis on the responses of aquaculture animals to bacteria, viruses, and other aqua-environmental stresses, and development of broadly cross-protective vaccine candidates. The reviewed articles are those that have been published in international peer reviewed journals. Copyright © 2012 Elsevier Ltd. All rights reserved.

Teleosts Genomics: Progress and Prospects in Disease Prevention and Control.

Science.gov (United States)

Munang'andu, Hetron Mweemba; Galindo-Villegas, Jorge; David, Lior

2018-04-04

Genome wide studies based on conventional molecular tools and upcoming omics technologies are beginning to gain functional applications in the control and prevention of diseases in teleosts fish. Herein, we provide insights into current progress and prospects in the use genomics studies for the control and prevention of fish diseases. Metagenomics has emerged to be an important tool used to identify emerging infectious diseases for the timely design of rational disease control strategies, determining microbial compositions in different aquatic environments used for fish farming and the use of host microbiota to monitor the health status of fish. Expounding the use of antimicrobial peptides (AMPs) as therapeutic agents against different pathogens as well as elucidating their role in tissue regeneration is another vital aspect of genomics studies that had taken precedent in recent years. In vaccine development, prospects made include the identification of highly immunogenic proteins for use in recombinant vaccine designs as well as identifying gene signatures that correlate with protective immunity for use as benchmarks in optimizing vaccine efficacy. Progress in quantitative trait loci (QTL) mapping is beginning to yield considerable success in identifying resistant traits against some of the highly infectious diseases that have previously ravaged the aquaculture industry. Altogether, the synopsis put forth shows that genomics studies are beginning to yield positive contribution in the prevention and control of fish diseases in aquaculture.

Teleosts Genomics: Progress and Prospects in Disease Prevention and Control

Directory of Open Access Journals (Sweden)

Hetron Mweemba Munang’andu

2018-04-01

Full Text Available Genome wide studies based on conventional molecular tools and upcoming omics technologies are beginning to gain functional applications in the control and prevention of diseases in teleosts fish. Herein, we provide insights into current progress and prospects in the use genomics studies for the control and prevention of fish diseases. Metagenomics has emerged to be an important tool used to identify emerging infectious diseases for the timely design of rational disease control strategies, determining microbial compositions in different aquatic environments used for fish farming and the use of host microbiota to monitor the health status of fish. Expounding the use of antimicrobial peptides (AMPs as therapeutic agents against different pathogens as well as elucidating their role in tissue regeneration is another vital aspect of genomics studies that had taken precedent in recent years. In vaccine development, prospects made include the identification of highly immunogenic proteins for use in recombinant vaccine designs as well as identifying gene signatures that correlate with protective immunity for use as benchmarks in optimizing vaccine efficacy. Progress in quantitative trait loci (QTL mapping is beginning to yield considerable success in identifying resistant traits against some of the highly infectious diseases that have previously ravaged the aquaculture industry. Altogether, the synopsis put forth shows that genomics studies are beginning to yield positive contribution in the prevention and control of fish diseases in aquaculture.

Evolution of Integrated Open Aquaculture Systems in Hungary: Results from a Case Study

Directory of Open Access Journals (Sweden)

József Popp

2018-01-01

Full Text Available This article presents the history of integrated farming in aquaculture through a Hungarian case study. The development of Hungarian integrated aquaculture is aligned with global trends. In the previous millennium, the utilization of the nutrients introduced into the system was the main aspect of the integration. In Hungary, technologies that integrated fish production with growing crops and animal husbandry appeared, including for example: large-scale fish-cum-rice production; fish-cum-duck production; and integrated pig-fish farming which were introduced in the second half of the 20th century. Today, the emphasis is on integrating the use of the kind of feed where the main goal is to minimize nutrient loads in the surrounding natural ecosystems and to maximize the utilization of the unit’s water resources. The various modern integrated freshwater aquaculture systems, such as intensive fish production combined with wetland, recirculation aquaculture system and multi-functional aquaculture, have proved their viability. However, the future opportunities for these systems have not always been properly recognized and acknowledged when the future of European aquaculture is discussed.

Sustainable aquaculture of Asian arowana--a review.

Science.gov (United States)

Medipally, S R; Yusoff, F M; Sharifhuddin, N; Shariff, M

2016-07-01

Asian arowana, Scleropages formosus is a highly valued aquarium fish in the world, particularly in Asian countries, and has been listed as one of the most highly endangered species. This is a freshwater, carnivorous, fairly large mouth breeding fish belonging to the family Osteoglossidae. Arowana can be found in different colour varieties such as green, red, silver and golden. Among these varieties, Malaysian golden is the most valuable fish and is endemic to the Krian riverine system, Malaysia. However, overexploitation, habitat change and pollution have caused a serious decline of this arowana variety. Recently, arowana aquaculture industry is expanding rapidly in Southeast Asian countries. However, difficulties in an accurate differentiation of sex and strains, causing imbalanced stocking ratios for optimum spawning, remain major obstacles in maximizing arowana production. In addition, problems in sustainable water sources of suitable quality and prevention of diseases need to be addressed. Recirculating aquaculture system (RAS) and bioremediation are two possible technologies that could be used to minimize pollution and ensure adequate high-quality water for arowana culture. In addition, the application of appropriate molecular markers for sex and strain identification is also an important strategy required for the improvement of captive breeding. This review discusses several issues such as the importance of arowana as an aquarium fish, its market demand, current problems in the arowana aquaculture industry and the possible technologies to enhance reproductive capacity and increase culture production. ?

Aquaculture Simulator

OpenAIRE

Bøe, Trond Anders

2015-01-01

Salmon fish farming has evolved to become a multi-billion dollar industry for Norway, with a significant growth in the last 10 years. With the introduction of modern and advanced technical equipment and higher environmental demands, follows a need for further training of experienced fish farmers and aquaculture students. Spreading knowledge about aquaculture and get people interested in the industry is important in order to secure future growth. This project will continue the development o...

Nutrient discharge from China’s aquaculture industry and associated environmental impacts

Science.gov (United States)

Zhang, Ying; Bleeker, Albert; Liu, Junguo

2015-04-01

China’s aquaculture industry accounts for the largest share of the world’s fishery production, and provides a principal source of protein for the nation’s booming population. However, the environmental effects of the nutrient loadings produced by this industry have not been systematically studied or reviewed. Few quantitative estimates exist for nutrient discharge from aquaculture and the resultant nutrient enrichment in waters and sediments. In this paper, we evaluate nutrient discharge from aquacultural systems into aquatic ecosystems and the resulting nutrient enrichment of water and sediments, based on data from 330 cases in 51 peer-reviewed publications. Nitrogen use efficiency ranged from 11.7% to 27.7%, whereas phosphorus use efficiency ranged from 8.7% to 21.2%. In 2010, aquacultural nutrient discharges into Chinese aquatic ecosystems included 1044 Gg total nitrogen (184 Gg N from mariculture; 860 Gg N freshwater culture) and 173 Gg total phosphorus (22 Gg P from mariculture; 151 Gg P from freshwater culture). Water bodies and sediments showed high levels of nutrient enrichment, especially in closed pond systems. However, this does not mean that open aquacultural systems have smaller nutrient losses. Improvement of feed efficiency in cage systems and retention of nutrients in closed systems will therefore be necessary. Strategies to increase nutrient recycling, such as integrated multi-trophic aquaculture, and social measures, such as subsidies, should be increased in the future. We recommend the recycling of nutrients in water and sediments by hybrid agricultural-aquacultural systems and the adoption of nutrient use efficiency as an indicator at farm or regional level for the sustainable development of aquaculture; such indicators; together with water quality indicators, can be used to guide evaluations of technological, policy, and economic approaches to improve the sustainability of Chinese aquaculture.

The impact and control of biofouling in marine aquaculture: a review.

Science.gov (United States)

Fitridge, Isla; Dempster, Tim; Guenther, Jana; de Nys, Rocky

2012-01-01

Biofouling in marine aquaculture is a specific problem where both the target culture species and/or infrastructure are exposed to a diverse array of fouling organisms, with significant production impacts. In shellfish aquaculture the key impact is the direct fouling of stock causing physical damage, mechanical interference, biological competition and environmental modification, while infrastructure is also impacted. In contrast, the key impact in finfish aquaculture is the fouling of infrastructure which restricts water exchange, increases disease risk and causes deformation of cages and structures. Consequently, the economic costs associated with biofouling control are substantial. Conservative estimates are consistently between 5-10% of production costs (equivalent to US$ 1.5 to 3 billion yr(-1)), illustrating the need for effective mitigation methods and technologies. The control of biofouling in aquaculture is achieved through the avoidance of natural recruitment, physical removal and the use of antifoulants. However, the continued rise and expansion of the aquaculture industry and the increasingly stringent legislation for biocides in food production necessitates the development of innovative antifouling strategies. These must meet environmental, societal, and economic benchmarks while effectively preventing the settlement and growth of resilient multi-species consortia of biofouling organisms.

Disease and health management in Asian aquaculture.

Science.gov (United States)

Bondad-Reantaso, Melba G; Subasinghe, Rohana P; Arthur, J Richard; Ogawa, Kazuo; Chinabut, Supranee; Adlard, Robert; Tan, Zilong; Shariff, Mohamed

2005-09-30

Asia contributes more than 90% to the world's aquaculture production. Like other farming systems, aquaculture is plagued with disease problems resulting from its intensification and commercialization. This paper describes the various factors, providing specific examples, which have contributed to the current disease problems faced by what is now the fastest growing food-producing sector globally. These include increased globalization of trade and markets; the intensification of fish-farming practices through the movement of broodstock, postlarvae, fry and fingerlings; the introduction of new species for aquaculture development; the expansion of the ornamental fish trade; the enhancement of marine and coastal areas through the stocking of aquatic animals raised in hatcheries; the unanticipated interactions between cultured and wild populations of aquatic animals; poor or lack of effective biosecurity measures; slow awareness on emerging diseases; the misunderstanding and misuse of specific pathogen free (SPF) stocks; climate change; other human-mediated movements of aquaculture commodities. Data on the socio-economic impacts of aquatic animal diseases are also presented, including estimates of losses in production, direct and indirect income and employment, market access or share of investment, and consumer confidence; food availability; industry failures. Examples of costs of investment in aquatic animal health-related activities, including national strategies, research, surveillance, control and other health management programmes are also provided. Finally, the strategies currently being implemented in the Asian region to deal with transboundary diseases affecting the aquaculture sector are highlighted. These include compliance with international codes, and development and implementation of regional guidelines and national aquatic animal health strategies; new diagnostic and therapeutic techniques and new information technology; new biosecurity measures including

Epigenetic considerations in aquaculture

Directory of Open Access Journals (Sweden)

Mackenzie R. Gavery

2017-12-01

Full Text Available Epigenetics has attracted considerable attention with respect to its potential value in many areas of agricultural production, particularly under conditions where the environment can be manipulated or natural variation exists. Here we introduce key concepts and definitions of epigenetic mechanisms, including DNA methylation, histone modifications and non-coding RNA, review the current understanding of epigenetics in both fish and shellfish, and propose key areas of aquaculture where epigenetics could be applied. The first key area is environmental manipulation, where the intention is to induce an ‘epigenetic memory’ either within or between generations to produce a desired phenotype. The second key area is epigenetic selection, which, alone or combined with genetic selection, may increase the reliability of producing animals with desired phenotypes. Based on aspects of life history and husbandry practices in aquaculture species, the application of epigenetic knowledge could significantly affect the productivity and sustainability of aquaculture practices. Conversely, clarifying the role of epigenetic mechanisms in aquaculture species may upend traditional assumptions about selection practices. Ultimately, there are still many unanswered questions regarding how epigenetic mechanisms might be leveraged in aquaculture.

Chinese aquaculture in light of green growth

OpenAIRE

Leilei Zou; Shuolin Huang

2015-01-01

Over China’s long history of aquaculture development, great achievements have been made by enhancing aquaculture as the major contributor to aquatic products supply, while lessons have also been learnt that aquaculture has been developing at the cost of environment. Priority is now given to the aquaculture development in the light of green growth, which attaches importance to both environment protection and high productivity. To sustain Chinese aquaculture in a green-growth manner, polices ch...

Information fusion in aquaculture: a state-of the art review

Directory of Open Access Journals (Sweden)

Shahbaz Gul HASSAN,Murtaza HASAN,Daoliang LI

2016-09-01

Full Text Available Efficient fish feeding is currently one of biggest challenges in aquaculture to enhance the production of fish quality and quantity. In this review, an information fusion approach was used to integrate multi-sensor and computer vision techniques to make fish feeding more efficient and accurate. Information fusion is a well-known technology that has been used in different fields of artificial intelligence, robotics, image processing, computer vision, sensors and wireless sensor networks. Information fusion in aquaculture is a growing field of research that is used to enhance the performance of an industrialized ecosystem. This review study surveys different fish feeding systems using multi-sensor data fusion, computer vision technology, and different food intake models. In addition, different fish behavior monitoring techniques are discussed, and the parameters of water, pH, dissolved oxygen, turbidity, temperature etc., necessary for the fish feeding process, are examined. Moreover, the different waste management and fish disease diagnosis techniques using different technologies, expert systems and modeling are also reviewed.

World Aquaculture: Environmental Impacts and Troubleshooting Alternatives

Science.gov (United States)

Martinez-Porchas, Marcel; Martinez-Cordova, Luis R.

2012-01-01

Aquaculture has been considered as an option to cope with the world food demand. However, criticisms have arisen around aquaculture, most of them related to the destruction of ecosystems such as mangrove forest to construct aquaculture farms, as well as the environmental impacts of the effluents on the receiving ecosystems. The inherent benefits of aquaculture such as massive food production and economical profits have led the scientific community to seek for diverse strategies to minimize the negative impacts, rather than just prohibiting the activity. Aquaculture is a possible panacea, but at present is also responsible for diverse problems related with the environmental health; however the new strategies proposed during the last decade have proven that it is possible to achieve a sustainable aquaculture, but such strategies should be supported and proclaimed by the different federal environmental agencies from all countries. Additionally there is an urgent need to improve legislation and regulation for aquaculture. Only under such scenario, aquaculture will be a sustainable practice. PMID:22649291

World Aquaculture: Environmental Impacts and Troubleshooting Alternatives

Directory of Open Access Journals (Sweden)

Marcel Martinez-Porchas

2012-01-01

Full Text Available Aquaculture has been considered as an option to cope with the world food demand. However, criticisms have arisen around aquaculture, most of them related to the destruction of ecosystems such as mangrove forest to construct aquaculture farms, as well as the environmental impacts of the effluents on the receiving ecosystems. The inherent benefits of aquaculture such as massive food production and economical profits have led the scientific community to seek for diverse strategies to minimize the negative impacts, rather than just prohibiting the activity. Aquaculture is a possible panacea, but at present is also responsible for diverse problems related with the environmental health; however the new strategies proposed during the last decade have proven that it is possible to achieve a sustainable aquaculture, but such strategies should be supported and proclaimed by the different federal environmental agencies from all countries. Additionally there is an urgent need to improve legislation and regulation for aquaculture. Only under such scenario, aquaculture will be a sustainable practice.

Applications of Microalgal Biotechnology for Disease Control in Aquaculture

Directory of Open Access Journals (Sweden)

Patai Charoonnart

2018-04-01

Full Text Available Aquaculture industries, and in particular the farming of fish and crustaceans, are major contributors to the economy of many countries and an increasingly important component in global food supply. However, the severe impact of aquatic microbial diseases on production performance remains a challenge to these industries. This article considers the potential applications of microalgal technology in the control of such diseases. At the simplest level, microalgae offer health-promoting benefits as a nutritional supplement in feed meal because of their digestibility and high content of proteins, lipids and essential nutrients. Furthermore, some microalgal species possess natural anti-microbial compounds or contain biomolecules that can serve as immunostimulants. In addition, emerging genetic engineering technologies in microalgae offer the possibility of producing ‘functional feed additives’ in which novel and specific bioactives, such as fish growth hormones, anti-bacterials, subunit vaccines, and virus-targeted interfering RNAs, are components of the algal supplement. The evaluation of such technologies for farm applications is an important step in the future development of sustainable aquaculture.

Antimicrobial resistance and antimicrobial resistance genes in marine bacteria from salmon aquaculture and non-aquaculture sites.

Science.gov (United States)

Shah, Syed Q A; Cabello, Felipe C; L'abée-Lund, Trine M; Tomova, Alexandra; Godfrey, Henry P; Buschmann, Alejandro H; Sørum, Henning

2014-05-01

Antimicrobial resistance (AR) detected by disc diffusion and antimicrobial resistance genes detected by DNA hybridization and polymerase chain reaction with amplicon sequencing were studied in 124 marine bacterial isolates from a Chilean salmon aquaculture site and 76 from a site without aquaculture 8 km distant. Resistance to one or more antimicrobials was present in 81% of the isolates regardless of site. Resistance to tetracycline was most commonly encoded by tetA and tetG; to trimethoprim, by dfrA1, dfrA5 and dfrA12; to sulfamethizole, by sul1 and sul2; to amoxicillin, by blaTEM ; and to streptomycin, by strA-strB. Integron integrase intl1 was detected in 14 sul1-positive isolates, associated with aad9 gene cassettes in two from the aquaculture site. intl2 Integrase was only detected in three dfrA1-positive isolates from the aquaculture site and was not associated with gene cassettes in any. Of nine isolates tested for conjugation, two from the aquaculture site transferred AR determinants to Escherichia coli. High levels of AR in marine sediments from aquaculture and non-aquaculture sites suggest that dispersion of the large amounts of antimicrobials used in Chilean salmon aquaculture has created selective pressure in areas of the marine environment far removed from the initial site of use of these agents. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Recent Major Advances of Biotechnology and Sustainable Aquaculture in China

Science.gov (United States)

Xiang, Jianhai

2015-01-01

Background: Global aquaculture production has increased continuously over the last five decades, and particularly in China. Its aquaculture has become the fastest growing and most efficient agri-sector, with production accounting for more than 70% of the world’s aquaculture output. In the new century, with serious challenges regarding population, resources and the environment, China has been working to develop high-quality, effective, healthy, and sustainable blue agriculture through the application of modern biotechnology. Sound knowledge related to the biology and ecology of aquatic organisms has laid a solid foundation and provided the innovation and technology for rapid development of the aquaculture industry. Marine biotechnology, which is enabling solutions for ocean productivity and sustainability, has been promoted since the last decades of the 20th Century in China. Objective: In this article, priority areas of research, mainly genetic breeding, omics studies, novel production systems, biosecurity, bioprocesses and biorefinery, as well as the major progress of marine biotechnology R&D in China are reviewed. Conclusion: Current innovative achievements in China are not enough and the level and frequency of academic advancements must be improved. International cooperation and assistance remain crucial for the success of marine biotechnology. PMID:28553577

Background paper on aquaculture research

OpenAIRE

Wenblad, Axel; Jokumsen, Alfred; Eskelinen, Unto; Torrissen, Ole

2013-01-01

The Board of MISTRA established in 2012 a Working Group (WG) on Aquaculture to provide the Board with background information for its upcoming decision on whether the foundation should invest in aquaculture research. The WG included Senior Advisor Axel Wenblad, Sweden (Chairman), Professor Ole Torrissen, Norway, Senior Advisory Scientist Unto Eskelinen, Finland and Senior Advisory Scientist Alfred Jokumsen, Denmark. The WG performed an investigation of the Swedish aquaculture sector including ...

Isotopes in aquaculture research

International Nuclear Information System (INIS)

Ayyappan, S.; Dash, B.; Ghosh, A.S.

1996-01-01

The applications of isotopes in aquaculture research include areas like aquatic production process, nutrient cycles and food chain dynamics, fish nutrition, fish physiology, genetics and immunology. The radioisotopes commonly used are beta emitters. The use of different radioisotopes in aquaculture research are presented. 2 tabs

Sustainable Treatment of Aquaculture Effluents—What Can We Learn from the Past for the Future?

Directory of Open Access Journals (Sweden)

Ariel E. Turcios

2014-02-01

Full Text Available Many aquaculture systems generate high amounts of wastewater containing compounds such as suspended solids, total nitrogen and total phosphorus. Today, aquaculture is imperative because fish demand is increasing. However, the load of waste is directly proportional to the fish production. Therefore, it is necessary to develop more intensive fish culture with efficient systems for wastewater treatment. A number of physical, chemical and biological methods used in conventional wastewater treatment have been applied in aquaculture systems. Constructed wetlands technology is becoming more and more important in recirculating aquaculture systems (RAS because wetlands have proven to be well-established and a cost-effective method for treating wastewater. This review gives an overview about possibilities to avoid the pollution of water resources; it focuses initially on the use of systems combining aquaculture and plants with a historical review of aquaculture and the treatment of its effluents. It discusses the present state, taking into account the load of pollutants in wastewater such as nitrates and phosphates, and finishes with recommendations to prevent or at least reduce the pollution of water resources in the future.

Potential drivers of virulence evolution in aquaculture

Science.gov (United States)

Kennedy, David A.; Kurath, Gael; Brito, Ilana L.; Purcell, Maureen K.; Read, Andrew F.; Winton, James R.; Wargo, Andrew R.

2016-01-01

Infectious diseases are economically detrimental to aquaculture, and with continued expansion and intensification of aquaculture, the importance of managing infectious diseases will likely increase in the future. Here, we use evolution of virulence theory, along with examples, to identify aquaculture practices that might lead to the evolution of increased pathogen virulence. We identify eight practices common in aquaculture that theory predicts may favor evolution toward higher pathogen virulence. Four are related to intensive aquaculture operations, and four others are related specifically to infectious disease control. Our intention is to make aquaculture managers aware of these risks, such that with increased vigilance, they might be able to detect and prevent the emergence and spread of increasingly troublesome pathogen strains in the future.

Increased competition for aquaculture from fisheries

DEFF Research Database (Denmark)

Jensen, Frank; Nielsen, Max; Nielsen, Rasmus

2014-01-01

; and supplies from aquaculture have grown continuously. In this paper, the impact of improved fisheries management on aquaculture growth is studied assuming perfect substitution between farmed and wild fish. We find that improved fisheries management, ceteris paribus, reduces the growth potential of global...... aquaculture in markets where wild fisheries constitute a large share of total supply....

Effects of nanoparticles in species of aquaculture interest.

Science.gov (United States)

Khosravi-Katuli, Kheyrollah; Prato, Ermelinda; Lofrano, Giusy; Guida, Marco; Vale, Gonçalo; Libralato, Giovanni

2017-07-01

Recently, it was observed that there is an increasing application of nanoparticles (NPs) in aquaculture. Manufacturers are trying to use nano-based tools to remove the barriers about waterborne food, growth, reproduction, and culturing of species, their health, and water treatment in order to increase aquaculture production rates, being the safe-by-design approach still unapplied. We reviewed the applications of NPs in aquaculture evidencing that the way NPs are applied can be very different: some are direclty added to feed, other to water media or in aquaculture facilities. Traditional toxicity data cannot be easily used to infer on aquaculture mainly considering short-term exposure scenarios, underestimating the potential exposure of aquacultured species. The main outputs are (i) biological models are not recurrent, and in the case, testing protocols are frequently different; (ii) most data derived from toxicity studies are not specifically designed on aquaculture needs, thus contact time, exposure concentrations, and other ancillary conditions do not meet the required standard for aquaculture; (iii) short-term exposure periods are investigated mainly on species of indirect aquaculture interest, while shrimp and fish as final consumers in aquaculture plants are underinvestigated (scarce or unknown data on trophic chain transfer of NPs): little information is available about the amount of NPs accumulated within marketed organisms; (iv) how NPs present in the packaging of aquacultured products can affect their quality remained substantially unexplored. NPs in aquaculture are a challenging topic that must be developed in the near future to assure human health and environmental safety. Graphical abstract ᅟ.

Removal of nitrogen by Algal Turf Scrubber Technology in recirculating aquaculture system

NARCIS (Netherlands)

Valeta, J.; Verdegem, M.C.J.

2015-01-01

Ongoing research in recirculation aquaculture focuses on evaluating and improving the purification potential of different types of filters. Algal Turf Scrubber (ATS) are special as they combine sedimentation and biofiltration. An ATS was subjected to high nutrient loads of catfish effluent to

Implications of water pollution for aquacultural development in Nigeria

African Journals Online (AJOL)

Pollution is an age – long problem which has become wide spread due to increase in human population, expanding human settlement and advances in production technologies. Similarly, aquaculture is also on the increase but as a result of increase in the demand of cheap, high quality protein necessitated by high ...

Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology

DEFF Research Database (Denmark)

Cao, Hongzhi; Hastie, Alex R.; Cao, Dandan

2014-01-01

mutations; however, none of the current detection methods are comprehensive, and currently available methodologies are incapable of providing sufficient resolution and unambiguous information across complex regions in the human genome. To address these challenges, we applied a high-throughput, cost......-effective genome mapping technology to comprehensively discover genome-wide SVs and characterize complex regions of the YH genome using long single molecules (>150 kb) in a global fashion. RESULTS: Utilizing nanochannel-based genome mapping technology, we obtained 708 insertions/deletions and 17 inversions larger...... fosmid data. Of the remaining 270 SVs, 260 are insertions and 213 overlap known SVs in the Database of Genomic Variants. Overall, 609 out of 666 (90%) variants were supported by experimental orthogonal methods or historical evidence in public databases. At the same time, genome mapping also provides...

Three draft genomes of Vibrio coralliilyticus strains isolated from bivalve hatcheries

Science.gov (United States)

Reported here are the draft genomes of three Vibrio coralliilyticus isolates RE87, AIC-7, and 080116A. Each strain was isolated in association with diseased oyster larvae in commercial aquaculture systems. These draft genomes will be useful for further studies in understanding the genomic features...

Cis-, intra-, subgenesis, genome editing as modern technologies for modifying the crop genomes (review

Directory of Open Access Journals (Sweden)

Н. Е. Волкова

2016-02-01

Full Text Available Purpose. Reviewing the literature on modern technologies of genetic modification of crop genomes. Results. The current state of genetically modified plants creation is analyzed. The information on cis-, intra- and subgenic plants and their comparison with transgenic crops is given. Examples of cis- and intragenesis application for improving characteristics of crops are provided. Such state-of-the-art technology of crop genome modification as genome editing is considered. Conclusions. Technologies for producing cis-, intra-, subgenic plants are rapidly developing and resulting in crops of the 21st century that can solve the problem of food provision for a constantly growing world population with the least contrary to the public interest.

Stringency of environmental regulation and aquaculture growth

DEFF Research Database (Denmark)

Gedefaw Abate, Tenaw; Nielsen, Rasmus; Tveterås, Ragnar

2016-01-01

remarkable growth in aquaculture while others have stagnated or even declined have not been determined. In this article, we investigate whether environmental regulations have an impact on aquaculture growth. Using a cross-country regression analysis, we show that stringent environmental regulations......During the last three decades, aquaculture has been the fastest growing animal-food-producing sector in the world, accounting for half of the present seafood supply. However, there is a significant growth disparity among aquaculture-producing countries. The reasons why some countries have achieved...... are negatively related to aquaculture growth, whereas GDP growth has a positive effect. Countries often face a difficult balancing act between growth and environmental considerations when devising regulations. Our empirical results suggest that stricter environmental regulations in developed countries have...

Meeting the Needs for More Fish Through Aquaculture

Science.gov (United States)

Giap, D. H.; Lam, T. J.

2015-10-01

Fish is one of the major sources of animal protein. Due to rising world populations, increasing income and urbanization, demand for fish has been increasing. In order to meet the need for more fish, aquaculture has become increasingly important as wild populations and production from capture fisheries have declined due to overfishing and poor management. In recent years, production from aquaculture has increased rapidly to address the shortfalls in capture fisheries, especially in Asia where aquaculture production accounts for about 90% of world aquaculture production by volume. This paper reviews the status of the world’s fish production, provides an update on Asian aquaculture, and highlights developments that are contributing to sustainable fish production, particularly integrated multi-trophic aquaculture and aquaponics.

The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum).

Science.gov (United States)

Mun, Seyoung; Kim, Yun-Ji; Markkandan, Kesavan; Shin, Wonseok; Oh, Sumin; Woo, Jiyoung; Yoo, Jongsu; An, Hyesuck; Han, Kyudong

2017-06-01

The manila clam, Ruditapes philippinarum, is an important bivalve species in worldwide aquaculture including Korea. The aquaculture production of R. philippinarum is under threat from diverse environmental factors including viruses, microorganisms, parasites, and water conditions with subsequently declining production. In spite of its importance as a marine resource, the reference genome of R. philippinarum for comprehensive genetic studies is largely unexplored. Here, we report the de novo whole-genome and transcriptome assembly of R. philippinarum across three different tissues (foot, gill, and adductor muscle), and provide the basic data for advanced studies in selective breeding and disease control in order to obtain successful aquaculture systems. An approximately 2.56 Gb high quality whole-genome was assembled with various library construction methods. A total of 108,034 protein coding gene models were predicted and repetitive elements including simple sequence repeats and noncoding RNAs were identified to further understanding of the genetic background of R. philippinarum for genomics-assisted breeding. Comparative analysis with the bivalve marine invertebrates uncover that the gene family related to complement C1q was enriched. Furthermore, we performed transcriptome analysis with three different tissues in order to support genome annotation and then identified 41,275 transcripts which were annotated. The R. philippinarum genome resource will markedly advance a wide range of potential genetic studies, a reference genome for comparative analysis of bivalve species and unraveling mechanisms of biological processes in molluscs. We believe that the R. philippinarum genome will serve as an initial platform for breeding better-quality clams using a genomic approach. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Aquaculture. Second Edition. Teacher Edition.

Science.gov (United States)

Walker, Susan S.; Crummett, Dan

This teacher and student guide for aquaculture contains 15 units of instruction that cover the following topics: (1) introduction to aquaculture; (2) the aquatic environment; (3) fundamental fish biology; (4) marketing; (5) site selection; (6) facility design and layout; (7) water quality management; (8) fish health management; (9) commercial…

THE DEVELOPMENT OF THE ORGANIC AQUACULTURE. CASE STUDY: ROMANIA

Directory of Open Access Journals (Sweden)

Silvius STANCIU

2015-12-01

Full Text Available Aquaculture contribute ever more to the production of aquatic food worldwide, even if the sustainable limits for majority of wild fish stocks, are now almost reached or even exceeded. In the EU, aquaculture is an important economic activity in many coastal and continental regions. Aquaculture plays an important role in terms of access to food resources and it is necessary to use its potential to contribute to sustainable development, food security, economic growth and employment. In this regard, starting from EU aquaculture objectives, the paper intend to make an analysis of the national situation of aquaculture and its current potential. The paper presented the progress of Romanian investments in aquaculture, identifying needs and opportunities for the Romanian aquaculture development. Taking into consideration the natural resources available and the growth of global request of organic product, the development of ecologic aquaculture might represent o niche market for local producers.

Genomics innovation: transforming healthcare, business, and the global economy.

Science.gov (United States)

Jimenez-Sanchez, Gerardo

2015-12-01

The genomics revolution has generated an unprecedented number of assets to propel innovation. Initial availability of genomics-based applications show a significant potential to contribute addressing global challenges, such as human health, food security, alternative sources of energies, and environmental sustainability. In the last years, most developed and emerging nations have established bioeconomy agendas where genomics plays a major role to meet their local needs. Genomic medicine is one of the most visible areas where genomics innovation is likely to contribute to a more individualized, predictive, and preventive medical practice. Examples in agriculture, dairy and beef, fishery, aquaculture, and forests industries include the effective selection of genetic variants associated to traits of economic value. Some, in addition to producing more and better foods, already represent an important increase in revenues to their respective industries. It is reasonable to predict that genomics applications will lead to a paradigm shift in our ability to ease significant health, economic, and social burdens. However, to successfully benefit from genomics innovations, it is imperative to address a number of hurdles related to generating robust scientific evidence, developing lower-cost sequencing technologies, effective bioinformatics, as well as sensitive ethical, economical, environmental, legal, and social aspects associated with the development and use of genomics innovations.

Evaluation of genome-enabled selection for bacterial cold water disease resistance using progeny performance data in Rainbow Trout: Insights on genotyping methods and genomic prediction models

Science.gov (United States)

Bacterial cold water disease (BCWD) causes significant economic losses in salmonid aquaculture, and traditional family-based breeding programs aimed at improving BCWD resistance have been limited to exploiting only between-family variation. We used genomic selection (GS) models to predict genomic br...

The use of Probiotics in Aquaculture

African Journals Online (AJOL)

JOSEPH

Addressing health questions with both pro-active and reactive programmes has thus .... Rationale for selecting and developing probiotics in aquaculture: The ... of probiotics in aquaculture could be regarded as a kind of insurance since it may ...

Application of Machine Learning Techniques in Aquaculture

OpenAIRE

Rahman, Akhlaqur; Tasnim, Sumaira

2014-01-01

In this paper we present applications of different machine learning algorithms in aquaculture. Machine learning algorithms learn models from historical data. In aquaculture historical data are obtained from farm practices, yields, and environmental data sources. Associations between these different variables can be obtained by applying machine learning algorithms to historical data. In this paper we present applications of different machine learning algorithms in aquaculture applications.

Does Aquaculture Support the Needs of Nutritionally Vulnerable Nations?

Directory of Open Access Journals (Sweden)

Christopher D. Golden

2017-05-01

Full Text Available Aquaculture now supplies half of the fish consumed directly by humans. We evaluate whether aquaculture, given current patterns of production and distribution, supports the needs of poor and food-insecure populations throughout the world. We begin by identifying 41 seafood-reliant nutritionally vulnerable nations (NVNs, and ask whether aquaculture meets human nutritional demand directly via domestic production or trade, or indirectly via purchase of nutritionally rich dietary substitutes. We find that a limited number of NVNs have domestically farmed seafood, and of those, only specific aquaculture approaches (e.g., freshwater in some locations have the potential to benefit nutritionally vulnerable populations. While assessment of aquaculture's direct contribution via trade is constrained by data limitations, we find that it is unlikely to contribute substantially to human nutrition in vulnerable groups, as most exported aquaculture consists of high-value species for international markets. We also determine that subpopulations who benefit from aquaculture profits are likely not the same subpopulations who are nutritionally vulnerable, and more research is needed to understand the impacts of aquaculture income gains. Finally, we discuss the relationship of aquaculture to existing trends in capture fisheries in NVNs, and suggest strategies to create lasting solutions to nutritional security, without exacerbating existing challenges in access to food and land resources.

76 FR 9210 - Draft DOC National Aquaculture Policy

Science.gov (United States)

2011-02-16

... DEPARTMENT OF COMMERCE Draft DOC National Aquaculture Policy AGENCY: Commerce. ACTION: Notice of availability of draft aquaculture policy; request for comments. SUMMARY: The Department of Commerce (DOC) is... United States. The intent of the policy is to guide DOC's actions and decisions on aquaculture and to...

Preliminary investigation on the conversion of aquaculture solid ...

African Journals Online (AJOL)

Conversion of aquaculture solid wastes into single cell protein (SCP) for fish feed through solid state fermentation using three fungi species, Aspergilus niger, Trichodema viride and Rhizopus species were investigated. Solid aquaculture waste was collected from the sedimentation unit of a re-circulating aquaculture farm in ...

Aquaculture image as seen by the media in the Spanish written and digital press in the recent years

OpenAIRE

Reig Puig, Lourdes; Márquez, Júlia; Flos Bassols, Rosa

2016-01-01

Aquaculture is still one of the fastest growing sectors of food production. The technological development undergone by the sector during the last decades is impressive and today the industry is ready to offer a wide diversity of high quality products. But the 25contradiction is that the consumer perception is not always positive about aquaculture, as demonstrated in several papers analysing their perception.

Aquaculture Production

African Journals Online (AJOL)

Peninah

strategies for ensuring that Kenya becomes one of the leading producers of fish from aquaculture in ... been only marginally included in the international debate on food security and nutrition. [13]. ... stocked trout into rivers for sport fishing [15].

Impact of Genomic Technologies on Chickpea Breeding Strategies

Directory of Open Access Journals (Sweden)

Rajeev K. Varshney

2012-08-01

Full Text Available The major abiotic and biotic stresses that adversely affect yield of chickpea (Cicer arietinum L. include drought, heat, fusarium wilt, ascochyta blight and pod borer. Excellent progress has been made in developing short-duration varieties with high resistance to fusarium wilt. The early maturity helps in escaping terminal drought and heat stresses and the adaptation of chickpea to short-season environments. Ascochyta blight continues to be a major challenge to chickpea productivity in areas where chickpea is exposed to cool and wet conditions. Limited variability for pod borer resistance has been a major bottleneck in the development of pod borer resistant cultivars. The use of genomics technologies in chickpea breeding programs has been limited, since available genomic resources were not adequate and limited polymorphism was observed in the cultivated chickpea for the available molecular markers. Remarkable progress has been made in the development of genetic and genomic resources in recent years and integration of genomic technologies in chickpea breeding has now started. Marker-assisted breeding is currently being used for improving drought tolerance and combining resistance to diseases. The integration of genomic technologies is expected to improve the precision and efficiency of chickpea breeding in the development of improved cultivars with enhanced resistance to abiotic and biotic stresses, better adaptation to existing and evolving agro-ecologies and traits preferred by farmers, industries and consumers.

Technologies and techniques for analysis and use of genome information, 1997; Genome joho kaidoku riyo gijutsu no chosa kenkyu

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-03-01

The paper clarified the whole image of cell functions by elucidating the function and manifestation control mechanism of genes existing in genomes, and the network of their interactions, and surveyed applicability of the useful functions obtained of cells and proteins to the industrial field. The survey was made from a viewpoint of the fields of both biology and information science. Especially, based on the function-known DNA base sequence database, the following technologies were surveyed: technology to predict the function of the function-unknown DNA base sequence, search/separation technology to acquire the genes to be functionally elucidated in a state of being suitable for manifestation, technology to get perfect proteins by effectively manifesting the genes to be functionally elucidated, and technology to analyze the function of the proteins obtained by manifestation of genes. Further, the International Symposium was held which is titled `Genome Research Opens a New World to Bioindustry (New Developments in Genome Informatics Technologies). With the future progress of technology to decipher and use genome information, the construction of much newer genome industry is anticipated. 165 refs., 44 figs., 10 tabs.

77 FR 41164 - Joint Subcommittee on Aquaculture Research and Development Strategic Plan

Science.gov (United States)

2012-07-12

..., conservation and enhancement of aquatic resources, and creation of new industries and job opportunities. The..., technologically appropriate, and diverse aquaculture sector in the United States that meets increasing demand for seafood and products that are affordable and meet high standards for safety, quality, and environmental...

Best Linear Unbiased Prediction of Genomic Breeding Values Using a Trait-Specific Marker-Derived Relationship Matrix

NARCIS (Netherlands)

Zhe Zhang, Z.; Liu, J.F.; Ding, Z.; Bijma, P.; Koning, de D.J.

2010-01-01

With the availability of high density whole-genome single nucleotide polymorphism chips, genomic selection has become a promising method to estimate genetic merit with potentially high accuracy for animal, plant and aquaculture species of economic importance. With markers covering the entire genome,

Disease in marine aquaculture

Science.gov (United States)

Sindermann, C. J.

1984-03-01

populations. Some progress has been made in marine disease control through chemical treatment in intensive culture systems, principally through application and modification of methods developed for freshwater aquaculture. Major constraints to use of chemicals are restrictions due to public health concerns about food contamination, and the negative effects of some chemicals on biological filters and on algal food production. There is a continuing need, however, for development of specific treatments for acute disease episodes — such as the nitrofurans, developed in Japan, which are effective for some bacterial diseases. The history of aquaculture — freshwater as well as marine — has been characterized by transfers and introductions of species to waters beyond their present ranges. The process continues, and carries with it the possibility of transfers of pathogens to native species and to the recipient culture environments. International groups are attempting to define codes of practice to govern such mass movements, but examples of introductions of real or potential pathogens already exist. The most recent and the most dramatic is the world wide transfer of a virus pathogen of penaeid shrimps. Earlier examples include the introduction of a protozoan pathogen of salmonids to the western hemisphere, and the introduction of a parasitic copepod from the Far East to the west coast of North America and to France. The conclusion is inevitable — diseases are substantial deterrents to aquaculture production. Diagnostic and control procedures are and will be important components of emerging aquaculture technology.

Bioethical Considerations of Advancing the Application of Marine Biotechnology and Aquaculture.

Science.gov (United States)

Harrell, Reginal M

2017-06-24

Normative ethical considerations of growth of the marine biotechnology and aquaculture disciplines in biopharming, food production, and marine products commercialization from a bioethical perspective have been limited. This paucity of information begs the question of what constitutes a bioethical approach (i.e., respect for individuals or autonomy; beneficence, nonmaleficence, and justice) to marine biotechnology and aquaculture, and whether it is one that is appropriate for consideration. Currently, thoughtful discussion on the bioethical implications of use, development, and commercialization of marine organisms or their products, as well as potential environmental effects, defaults to human biomedicine as a model. One must question the validity of using human bioethical principlism moral norms for appropriating a responsible marine biotechnology and aquaculture ethic. When considering potential impacts within these disciplines, deference must be given to differing value systems in order to find common ground to advance knowledge and avoid emotive impasses that can hinder the science and its application. The import of bioethical considerations when conducting research and/or production is discussed. This discussion is directed toward applying bioethical principles toward technology used for food, biomedical development (e.g., biopharming), or as model species for advancement of knowledge for human diseases.

Bioethical Considerations of Advancing the Application of Marine Biotechnology and Aquaculture

Directory of Open Access Journals (Sweden)

Reginal M. Harrell

2017-06-01

Full Text Available Normative ethical considerations of growth of the marine biotechnology and aquaculture disciplines in biopharming, food production, and marine products commercialization from a bioethical perspective have been limited. This paucity of information begs the question of what constitutes a bioethical approach (i.e., respect for individuals or autonomy; beneficence, nonmaleficence, and justice to marine biotechnology and aquaculture, and whether it is one that is appropriate for consideration. Currently, thoughtful discussion on the bioethical implications of use, development, and commercialization of marine organisms or their products, as well as potential environmental effects, defaults to human biomedicine as a model. One must question the validity of using human bioethical principlism moral norms for appropriating a responsible marine biotechnology and aquaculture ethic. When considering potential impacts within these disciplines, deference must be given to differing value systems in order to find common ground to advance knowledge and avoid emotive impasses that can hinder the science and its application. The import of bioethical considerations when conducting research and/or production is discussed. This discussion is directed toward applying bioethical principles toward technology used for food, biomedical development (e.g., biopharming, or as model species for advancement of knowledge for human diseases.

Antibacterial Resistance in African Catfish Aquaculture: a Review

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Madubuike U. ANYANWU

2016-03-01

Full Text Available Antibacterial resistance (AR is currently one of the greatest threats to mankind as it constitutes health crisis. Extensive use of antibacterial agents in human and veterinary medicine, and farm crops have resulted in emergence of antibacterial-resistant organisms in different environmental settings including aquaculture. Antibacterial resistance in aquaculture is a serious global concern because antibacterial resistance genes (ARGs can be transferred easily from aquaculture setting to other ecosystems and the food chain. African catfish (ACF aquaculture has increased at a phenomenal rate through a continuous process of intensification, expansion and diversification. Risk of bacterial diseases has also increased and consequently there is increased use of antibacterial agents for treatment. Antibacterial resistance in ACF aquaculture has huge impact on the food chain and thus represents risk to public and animal health. In “one health” approach of curbing AR, knowledge of the sources, mechanisms and magnitude of AR in ACF aquaculture and its potential impact on the food chain is important in designing and prioritizing monitoring programs that may generate data that would be relevant for performing quantitative risk assessments, implementation of antibacterial stewardship plans, and developing effective treatment strategies for the control of ACF disease and reducing risk to public health. This review provides insight on the sources, mechanisms, prevalence and impact of antibacterial resistance in ACF aquaculture environment, a setting where the impact of AR is neglected or underestimated.

The use of marine aquaculture solid waste for nursery production of the salt marsh plants Spartina alterniflora and Juncus roemerianus

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H.M. Joesting

2016-05-01

Full Text Available Recent technological advances in marine shrimp and finfish aquaculture alleviate many of the environmental risks associated with traditional aquaculture, but challenges remain in cost-effective waste management. Liquid effluent from freshwater aquaculture systems has been shown to be effective in agricultural crop production (i.e., aquaponics, but few studies have explored the potential for reuse of marine aquaculture effluent, particularly the solid fraction. The purpose of this study was to investigate the use of marine aquaculture solid waste as a nutrient source for the nursery production of two salt tolerant plants commonly used in coastal salt marsh restoration, Spartina alterniflora (smooth cordgrass and Juncus roemerianus (black needlerush. Specifically, measurements of plant biomass and tissue nitrogen and phosphorus allocation were compared between plants fertilized with dried shrimp biofloc solids and unfertilized controls, as well as between plants fertilized with dried fish solids and unfertilized controls. In both experiments, S. alterniflora plants fertilized with marine aquaculture solids showed few significant differences from unfertilized controls, whereas fertilized J. roemerianus plants had significantly greater biomass and absorbed and incorporated more nutrients in plant tissue compared to unfertilized controls. These results suggest that J. roemerianus may be a suitable plant species for the remediation of marine aquaculture solid waste. Keywords: Marine aquaculture, Salt marsh plants, Solid waste, Phytoremediation

Genome editing: a robust technology for human stem cells.

Science.gov (United States)

Chandrasekaran, Arun Pandian; Song, Minjung; Ramakrishna, Suresh

2017-09-01

Human pluripotent stem cells comprise induced pluripotent and embryonic stem cells, which have tremendous potential for biological and therapeutic applications. The development of efficient technologies for the targeted genome alteration of stem cells in disease models is a prerequisite for utilizing stem cells to their full potential. Genome editing of stem cells is possible with the help of synthetic nucleases that facilitate site-specific modification of a gene of interest. Recent advances in genome editing techniques have improved the efficiency and speed of the development of stem cells for human disease models. Zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated system are powerful tools for editing DNA at specific loci. Here, we discuss recent technological advances in genome editing with site-specific nucleases in human stem cells.

Fisheries And Aquaculture Resources And Their Interactions With Environment in Turkey

Science.gov (United States)

Deniz, H.

2003-04-01

potential of aquaculture was fully realised and there were, therefore, no areas specifically designated for aquaculture. Aquaculture development is therefore being restricted by the loss of access to some of the best sites. The most common conflicts occur with environmental protection, tourism, recreation, urbanisation, archaeology and navigation. In order to prevent such conflicts and minimise the environmental impacts the open sea fishery, offshore mariculture systems, and echo-friendly technologies have to be adopted. In addition to that integrated coastal management models must be developed and implemented. Key words: fisheries and aquaculture resources, environment, interaction, tourism, protected areas, mangement and sustainability.

Public Health Perspectives on Aquaculture.

Science.gov (United States)

Gormaz, Juan G; Fry, Jillian P; Erazo, Marcia; Love, David C

2014-01-01

Nearly half of all seafood consumed globally comes from aquaculture, a method of food production that has expanded rapidly in recent years. Increasing seafood consumption has been proposed as part of a strategy to combat the current non-communicable disease (NCD) pandemic, but public health, environmental, social, and production challenges related to certain types of aquaculture production must be addressed. Resolving these complicated human health and ecologic trade-offs requires systems thinking and collaboration across many fields; the One Health concept is an integrative approach that brings veterinary and human health experts together to combat zoonotic disease. We propose applying and expanding the One Health approach to facilitate collaboration among stakeholders focused on increasing consumption of seafood and expanding aquaculture production, using methods that minimize risks to public health, animal health, and ecology. This expanded application of One Health may also have relevance to other complex systems with similar trade-offs.

Toxicogenomics: Applications of new functional genomics technologies in toxicology

NARCIS (Netherlands)

Heijne, W.H.M.

2004-01-01

Toxicogenomics studies toxic effects of substances on organisms in relation to the composition of the genome. It applies the functional genomics technologies transcriptomics, proteomics and metabolomics that determine expression of the genes, proteins and metabolites in a sample. These methods could

Occupational Health and Safety in Aquaculture: Insights on Brazilian Public Policies.

Science.gov (United States)

de Oliveira, Pedro Keller; Cavalli, Richard Souto; Kunert Filho, Hiran Castagnino; Carvalho, Daiane; Benedetti, Nadine; Rotta, Marco Aurélio; Peixoto Ramos, Augusto Sávio; de Brito, Kelly Cristina Tagliari; de Brito, Benito Guimarães; da Rocha, Andréa Ferretto; Stech, Marcia Regina; Cavalli, Lissandra Souto

2017-01-01

Aquaculture has many occupational hazards, including those that are physical, chemical, biological, ergonomic, and mechanical. The risks in aquaculture are inherent, as this activity requires particular practices. The objective of the present study was to show the risks associated with the aquaculture sector and present a critical overview on the Brazilian public policies concerning aquaculture occupational health. Methods include online research involved web searches and electronic databases including Pubmed, Google Scholar, Scielo and government databases. We conducted a careful revision of Brazilian labor laws related to occupational health and safety, rural workers, and aquaculture. The results and conclusion support the idea that aquaculture requires specific and well-established industry programs and policies, especially in developing countries. Aquaculture still lacks scientific research, strategies, laws, and public policies to boost the sector with regard to occupational health and safety. The establishment of a safe workplace in aquaculture in developing countries remains a challenge for all involved in employer-employee relationships.

Genomic insight into the common carp (Cyprinus carpio genome by sequencing analysis of BAC-end sequences

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Wang Jintu

2011-04-01

Full Text Available Abstract Background Common carp is one of the most important aquaculture teleost fish in the world. Common carp and other closely related Cyprinidae species provide over 30% aquaculture production in the world. However, common carp genomic resources are still relatively underdeveloped. BAC end sequences (BES are important resources for genome research on BAC-anchored genetic marker development, linkage map and physical map integration, and whole genome sequence assembling and scaffolding. Result To develop such valuable resources in common carp (Cyprinus carpio, a total of 40,224 BAC clones were sequenced on both ends, generating 65,720 clean BES with an average read length of 647 bp after sequence processing, representing 42,522,168 bp or 2.5% of common carp genome. The first survey of common carp genome was conducted with various bioinformatics tools. The common carp genome contains over 17.3% of repetitive elements with GC content of 36.8% and 518 transposon ORFs. To identify and develop BAC-anchored microsatellite markers, a total of 13,581 microsatellites were detected from 10,355 BES. The coding region of 7,127 genes were recognized from 9,443 BES on 7,453 BACs, with 1,990 BACs have genes on both ends. To evaluate the similarity to the genome of closely related zebrafish, BES of common carp were aligned against zebrafish genome. A total of 39,335 BES of common carp have conserved homologs on zebrafish genome which demonstrated the high similarity between zebrafish and common carp genomes, indicating the feasibility of comparative mapping between zebrafish and common carp once we have physical map of common carp. Conclusion BAC end sequences are great resources for the first genome wide survey of common carp. The repetitive DNA was estimated to be approximate 28% of common carp genome, indicating the higher complexity of the genome. Comparative analysis had mapped around 40,000 BES to zebrafish genome and established over 3

Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences

Science.gov (United States)

2011-01-01

Background Common carp is one of the most important aquaculture teleost fish in the world. Common carp and other closely related Cyprinidae species provide over 30% aquaculture production in the world. However, common carp genomic resources are still relatively underdeveloped. BAC end sequences (BES) are important resources for genome research on BAC-anchored genetic marker development, linkage map and physical map integration, and whole genome sequence assembling and scaffolding. Result To develop such valuable resources in common carp (Cyprinus carpio), a total of 40,224 BAC clones were sequenced on both ends, generating 65,720 clean BES with an average read length of 647 bp after sequence processing, representing 42,522,168 bp or 2.5% of common carp genome. The first survey of common carp genome was conducted with various bioinformatics tools. The common carp genome contains over 17.3% of repetitive elements with GC content of 36.8% and 518 transposon ORFs. To identify and develop BAC-anchored microsatellite markers, a total of 13,581 microsatellites were detected from 10,355 BES. The coding region of 7,127 genes were recognized from 9,443 BES on 7,453 BACs, with 1,990 BACs have genes on both ends. To evaluate the similarity to the genome of closely related zebrafish, BES of common carp were aligned against zebrafish genome. A total of 39,335 BES of common carp have conserved homologs on zebrafish genome which demonstrated the high similarity between zebrafish and common carp genomes, indicating the feasibility of comparative mapping between zebrafish and common carp once we have physical map of common carp. Conclusion BAC end sequences are great resources for the first genome wide survey of common carp. The repetitive DNA was estimated to be approximate 28% of common carp genome, indicating the higher complexity of the genome. Comparative analysis had mapped around 40,000 BES to zebrafish genome and established over 3,100 microsyntenies, covering over 50% of

Design and Development of Smart Aquaculture System Based on IFTTT Model and Cloud Integration

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Dzulqornain Muhammad Iskandar

2018-01-01

Full Text Available The internet of things technology (IoT is growing very rapidly. IoT implementation has been conducted in several sectors. One of them is for aquaculture. For the traditional farmers, they face problems for monitoring water quality and the way to increase the quality of the water quickly and efficiently. This paper presents a real-time monitoring and controlling system for aquaculture based on If This Then That (IFTTT model and cloud integration. This system was composed of smart sensor module which supports modularity, smart aeration system for controlling system, local network system, cloud computing system and client visualization data. In order to monitor the water condition, we collect the data from smart sensor module. Smart sensor module consists of sensor dissolved oxygen, potential of hydrogen, water temperature and water level. The components of smart aeration system are microcontroller NodeMCU v3, relay, power supply, and propeller that can produce oxygen. The system could set the IFTTT rules for the ideal water condition for the pond in any kinds of aquaculture based on its needs through the web and android application. The experimental result shows that use IFTTT model makes the aquaculture monitoring system more customizable, expandable and dynamic.

State of the Art and Challenges for Offshore Integrated Multi-Trophic Aquaculture (IMTA

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Bela H. Buck

2018-05-01

Full Text Available By moving away from coastal waters and hence reducing pressure on nearshore ecosystems, offshore aquaculture can be seen as a possible step towards the large-scale expansion of marine food production. Integrated multi-trophic aquaculture (IMTA in nearshore water bodies has received increasing attention and could therefore play a role in the transfer of aquaculture operations to offshore areas. IMTA holds scope for multi-use of offshore areas and can bring environmental benefits from making use of waste products and transforming these into valuable co-products. Furthermore, they may act as alternative marine production systems and provide scope for alternative income options for coastal communities, e.g., by acting as nodes for farm operation and maintenance requirements. This paper summarizes the current state of knowledge on the implications of the exposed nature of offshore and open ocean sites on the biological, technological and socio-economic performance of IMTA. Of particular interest is improving knowledge about resource flows between integrated species in hydrodynamic challenging conditions that characterize offshore waters.

Salmon Aquaculture and Antimicrobial Resistance in the Marine Environment

Science.gov (United States)

Buschmann, Alejandro H.; Tomova, Alexandra; López, Alejandra; Maldonado, Miguel A.; Henríquez, Luis A.; Ivanova, Larisa; Moy, Fred; Godfrey, Henry P.; Cabello, Felipe C.

2012-01-01

Antimicrobials used in salmon aquaculture pass into the marine environment. This could have negative impacts on marine environmental biodiversity, and on terrestrial animal and human health as a result of selection for bacteria containing antimicrobial resistance genes. We therefore measured the numbers of culturable bacteria and antimicrobial-resistant bacteria in marine sediments in the Calbuco Archipelago, Chile, over 12-month period at a salmon aquaculture site approximately 20 m from a salmon farm and at a control site 8 km distant without observable aquaculture activities. Three antimicrobials extensively used in Chilean salmon aquaculture (oxytetracycline, oxolinic acid, and florfenicol) were studied. Although none of these antimicrobials was detected in sediments from either site, traces of flumequine, a fluoroquinolone antimicrobial also widely used in Chile, were present in sediments from both sites during this period. There were significant increases in bacterial numbers and antimicrobial-resistant fractions to oxytetracycline, oxolinic acid, and florfenicol in sediments from the aquaculture site compared to those from the control site. Interestingly, there were similar numbers of presumably plasmid-mediated resistance genes for oxytetracycline, oxolinic acid and florfenicol in unselected marine bacteria isolated from both aquaculture and control sites. These preliminary findings in one location may suggest that the current use of large amounts of antimicrobials in Chilean aquaculture has the potential to select for antimicrobial-resistant bacteria in marine sediments. PMID:22905164

Salmon aquaculture and antimicrobial resistance in the marine environment.

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Alejandro H Buschmann

Full Text Available Antimicrobials used in salmon aquaculture pass into the marine environment. This could have negative impacts on marine environmental biodiversity, and on terrestrial animal and human health as a result of selection for bacteria containing antimicrobial resistance genes. We therefore measured the numbers of culturable bacteria and antimicrobial-resistant bacteria in marine sediments in the Calbuco Archipelago, Chile, over 12-month period at a salmon aquaculture site approximately 20 m from a salmon farm and at a control site 8 km distant without observable aquaculture activities. Three antimicrobials extensively used in Chilean salmon aquaculture (oxytetracycline, oxolinic acid, and florfenicol were studied. Although none of these antimicrobials was detected in sediments from either site, traces of flumequine, a fluoroquinolone antimicrobial also widely used in Chile, were present in sediments from both sites during this period. There were significant increases in bacterial numbers and antimicrobial-resistant fractions to oxytetracycline, oxolinic acid, and florfenicol in sediments from the aquaculture site compared to those from the control site. Interestingly, there were similar numbers of presumably plasmid-mediated resistance genes for oxytetracycline, oxolinic acid and florfenicol in unselected marine bacteria isolated from both aquaculture and control sites. These preliminary findings in one location may suggest that the current use of large amounts of antimicrobials in Chilean aquaculture has the potential to select for antimicrobial-resistant bacteria in marine sediments.

A research update for the Stuttgart National Aquaculture Research Center

Science.gov (United States)

Aquaculture (fish farming) has played an ever-increasing role in providing people with fish, shrimp, and shellfish. Aquaculture is currently the fastest growing sector of global food production and in 2016 totaled 90 million tons valued at $180 billion. The production of food-fish from aquaculture...

Aquaculture Asia, Vol. 8, No. 1, pp.1-58, January-March 2003

OpenAIRE

2003-01-01

*Table of Contents* Sustainable Aquaculture Fertilization, soil and water quality management in small-scale ponds part II:Soil and water quality management S. Adhikari Fisheries and aquaculture activities in Nepal Tek Gurung Peter Edwards writes on rural aquaculture: A knowledge-base for rural aquaculture Farmers as Scientists: Commercialization of giant freshwater prawn culture in India M.C. Nandeesha Aquaculture in reservoir fed canal based irrigation systems of I...

Does aquaculture add resilience to the global food system?

Science.gov (United States)

Troell, Max; Naylor, Rosamond L; Metian, Marc; Beveridge, Malcolm; Tyedmers, Peter H; Folke, Carl; Arrow, Kenneth J; Barrett, Scott; Crépin, Anne-Sophie; Ehrlich, Paul R; Gren, Asa; Kautsky, Nils; Levin, Simon A; Nyborg, Karine; Österblom, Henrik; Polasky, Stephen; Scheffer, Marten; Walker, Brian H; Xepapadeas, Tasos; de Zeeuw, Aart

2014-09-16

Aquaculture is the fastest growing food sector and continues to expand alongside terrestrial crop and livestock production. Using portfolio theory as a conceptual framework, we explore how current interconnections between the aquaculture, crop, livestock, and fisheries sectors act as an impediment to, or an opportunity for, enhanced resilience in the global food system given increased resource scarcity and climate change. Aquaculture can potentially enhance resilience through improved resource use efficiencies and increased diversification of farmed species, locales of production, and feeding strategies. However, aquaculture's reliance on terrestrial crops and wild fish for feeds, its dependence on freshwater and land for culture sites, and its broad array of environmental impacts diminishes its ability to add resilience. Feeds for livestock and farmed fish that are fed rely largely on the same crops, although the fraction destined for aquaculture is presently small (∼4%). As demand for high-value fed aquaculture products grows, competition for these crops will also rise, as will the demand for wild fish as feed inputs. Many of these crops and forage fish are also consumed directly by humans and provide essential nutrition for low-income households. Their rising use in aquafeeds has the potential to increase price levels and volatility, worsening food insecurity among the most vulnerable populations. Although the diversification of global food production systems that includes aquaculture offers promise for enhanced resilience, such promise will not be realized if government policies fail to provide adequate incentives for resource efficiency, equity, and environmental protection.

Genomic technologies in neonatology

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L. N. Chernova

2017-01-01

Full Text Available In recent years, there has been a tremendous trend toward personalized medicine. Advances in the field forced clinicians, including neonatologists, to take a fresh look at prevention, tactics of management and therapy of various diseases. In the center of attention of foreign, and increasingly Russian, researchers and doctors, there are individual genomic data that allow not only to assess the risks of some form of pathology, but also to successfully apply personalized strategies of prediction, prevention and targeted treatment. This article provides a brief review of the latest achievements of genomic technologies in newborns, examines the problems and potential applications of genomics in promoting the concept of personalized medicine in neonatology. The increasing amount of personalized data simply impossible to analyze only by the human mind. In this connection, the need of computers and bioinformatics is obvious. The article reveals the role of translational bioinformatics in the analysis and integration of the results of the accumulated fundamental research into complete clinical decisions. The latest advances in neonatal translational bioinformatics such as clinical decision support systems are considered. It helps to monitor vital parameters of newborns influencing the course of a particular disease, to calculate the increased risks of the development of various pathologies and to select the drugs.

The use of probiotics in aquaculture.

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Hai, N V

2015-10-01

This study aims to present comprehensive notes for the use of probiotics in aquaculture. Probiotics have been proven to be positive promoters of aquatic animal growth, survival and health. In aquaculture, intestines, gills, the skin mucus of aquatic animals, and habitats or even culture collections and commercial products, can be sources for acquiring appropriate probiotics, which have been identified as bacteria (Gram-positive and Gram-negative) and nonbacteria (bacteriophages, microalgae and yeasts). While a bacterium is a pathogen to one aquatic animal, it can bring benefits to another fish species; a screening process plays a significant role in making a probiotic species specific. The administration of probiotics varies from oral/water routine to feed additives, of which the latter is commonly used in aquaculture. Probiotic applications can be either mono or multiple strains, or even in combination with prebiotic, immunostimulants such as synbiotics and synbiotism, and in live or dead forms. Encapsulating probiotics with live feed is a suitable approach to convey probiotics to aquatic animals. Dosage and duration of time are significant factors in providing desired results. Several modes of actions of probiotics are presented, while some others are not fully understood. Suggestions for further studies on the effects of probiotics in aquaculture are proposed. © 2015 The Society for Applied Microbiology.

Aquaculture in South Africa: A cooperative research programme

CSIR Research Space (South Africa)

Safriel, O

1984-06-01

Full Text Available the industry on a sound footing. An Aquaculture Working Group was appointed by the CSIR in 1981, which developed a research strategy, identified needs and suggested priorities for research on major problem areas in aquaculture....

Sequence based polymorphic (SBP marker technology for targeted genomic regions: its application in generating a molecular map of the Arabidopsis thaliana genome

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Sahu Binod B

2012-01-01

Full Text Available Abstract Background Molecular markers facilitate both genotype identification, essential for modern animal and plant breeding, and the isolation of genes based on their map positions. Advancements in sequencing technology have made possible the identification of single nucleotide polymorphisms (SNPs for any genomic regions. Here a sequence based polymorphic (SBP marker technology for generating molecular markers for targeted genomic regions in Arabidopsis is described. Results A ~3X genome coverage sequence of the Arabidopsis thaliana ecotype, Niederzenz (Nd-0 was obtained by applying Illumina's sequencing by synthesis (Solexa technology. Comparison of the Nd-0 genome sequence with the assembled Columbia-0 (Col-0 genome sequence identified putative single nucleotide polymorphisms (SNPs throughout the entire genome. Multiple 75 base pair Nd-0 sequence reads containing SNPs and originating from individual genomic DNA molecules were the basis for developing co-dominant SBP markers. SNPs containing Col-0 sequences, supported by transcript sequences or sequences from multiple BAC clones, were compared to the respective Nd-0 sequences to identify possible restriction endonuclease enzyme site variations. Small amplicons, PCR amplified from both ecotypes, were digested with suitable restriction enzymes and resolved on a gel to reveal the sequence based polymorphisms. By applying this technology, 21 SBP markers for the marker poor regions of the Arabidopsis map representing polymorphisms between Col-0 and Nd-0 ecotypes were generated. Conclusions The SBP marker technology described here allowed the development of molecular markers for targeted genomic regions of Arabidopsis. It should facilitate isolation of co-dominant molecular markers for targeted genomic regions of any animal or plant species, whose genomic sequences have been assembled. This technology will particularly facilitate the development of high density molecular marker maps, essential for

Feeding aquaculture in an era of finite resources

Science.gov (United States)

Naylor, Rosamond L.; Hardy, Ronald W.; Bureau, Dominique P.; Chiu, Alice; Elliott, Matthew; Farrell, Anthony P.; Forster, Ian; Gatlin, Delbert M.; Goldburg, Rebecca J.; Hua, Katheline; Nichols, Peter D.

2009-01-01

Aquaculture's pressure on forage fisheries remains hotly contested. This article reviews trends in fishmeal and fish oil use in industrial aquafeeds, showing reduced inclusion rates but greater total use associated with increased aquaculture production and demand for fish high in long-chain omega-3 oils. The ratio of wild fisheries inputs to farmed fish output has fallen to 0.63 for the aquaculture sector as a whole but remains as high as 5.0 for Atlantic salmon. Various plant- and animal-based alternatives are now used or available for industrial aquafeeds, depending on relative prices and consumer acceptance, and the outlook for single-cell organisms to replace fish oil is promising. With appropriate economic and regulatory incentives, the transition toward alternative feedstuffs could accelerate, paving the way for a consensus that aquaculture is aiding the ocean, not depleting it. PMID:19805247

Certify Sustainable Aquaculture?

DEFF Research Database (Denmark)

Bush, Simon; Belton, Ben; Hall, Derek

2013-01-01

) fisheries production stagnating, aquaculture may help close the forecast global deficit in fish protein by 2020 (2). This so-called “blue revolution” requires addressing a range of environmental and social problems, including water pollution, degradation of ecosystems, and violation of labor standards....

Aquaculture as a part of a multi-use platform

DEFF Research Database (Denmark)

Christensen, Erik Damgaard; Svenstrup Petersen, Ole; Aarup Ahrensberg, Nick

2014-01-01

European oceans will be subject to massive development of marine infrastructure in the near future. The most obvious is the energy facilities e.g. offshore wind farms, exploitation of wave energy, expansion of electricity connections, and also further development and implementation of marine...... aquaculture. These developments urgently require effective marine technology and governance solutions to facilitate installation, operation and maintenance of these novel offshore activities. Simultaneously, both economic costs and environmental impact have to remain within acceptable limits, in order...

An Overview of Aquaculture in the Nordic Countries

DEFF Research Database (Denmark)

Paisley, Larry; Ariel, Ellen; Lyngstad, T. M.

2010-01-01

in the Nordic countries has a long history; beginning in the 1850s when hatcheries for restocking of salmon and trout were established in Norway. Nowadays, Atlantic salmon is the dominant cultured species in Norway and the Faroe Islands, whereas rainbow trout dominate in Denmark, Finland, and Sweden. Arctic......The goal of this review was to describe in some detail the Nordic aquaculture industries in order to illuminate the similarities and differences. Information that was gathered for each country includes aquaculture history, aquaculture acts and regulations, production and production systems...

THE FISHERIES AND AQUACULTURE COMPONENT OF RURAL DEVELOPMENT

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Adrian ZUGRAVU

2006-01-01

Full Text Available Fisheries and aquaculture can provide a key contribution to food security and poverty alleviation. Fisheries and aquaculture policy is an instrument for the conservation and management of fisheries and aquaculture. It was created with the aims of managing a common resource. Fisheries policies and management strategies the world over is in a state of flux, continued attempts to use fisheriesas the key to solving a complex web of social and economic issues threaten to overwhelm the basic fact that, if this resources are overfished, they will not sustain either social or development.

Offshore Aquaculture: I Know It When I See It

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Halley E. Froehlich

2017-05-01

Full Text Available Offshore aquaculture is increasingly viewed as a mechanism to meet growing protein demand for seafood, while minimizing adverse consequences on the environment and other uses in the oceans. However, despite growing interest in offshore aquaculture, there appears to be no consensus as to what measures commonly define an offshore site or how effects of offshore aquaculture—relative to more nearshore practices—are assessed. This lack of agreement on what constitutes offshore aquaculture has the potential to convolute communication, create uncertainty in regulatory processes, and impede understanding of the ecological implications of offshore farming. To begin addressing these issues, we reviewed and analyzed biologically-focused primary and gray literature (Ntotal = 70 that categorize and quantify characteristics of offshore aquaculture from around the world. We found that many “offshore” descriptions are relatively close to shore (<3 nm and significantly shallower (minimum depth ≤30 m than may be assumed. We also uncovered an overall lack of consistent reporting of even the most common location-focused metrics (distance from shore, depth, current, a dearth of impact related studies (n = 17, and narrow scope of the studies themselves (i.e., 82% nutrient pollution. Of the finite subset of articles that investigated negative ecological impacts of offshore aquaculture, we found the probability of any measurable impact from an offshore farm appears to significantly decrease with distance from the farm (probability of measurable response at 90 m ± SE = 0.01 ± 0.03. Such general, but informative points of reference could be more robustly quantified with better systematic and standardized reporting of physical farm characteristics and a broader scope of ecological investigation into the effects of marine aquaculture. With offshore aquaculture still in its infancy, consistent metrics are needed for a comparable framework to guide sustainable

Hybrid governance of aquaculture: Opportunities and challenges.

Science.gov (United States)

Vince, Joanna; Haward, Marcus

2017-10-01

The development of third party assessment and certification of fisheries and aquaculture has provided new forms of governance in sectors that were traditionally dominated by state based regulation. Emerging market based approaches are driven by shareholder expectations as well as commitment to corporate social responsibility, whereas community engagement is increasingly centered on the questions of social license to operate. Third party assessment and certification links state, market and community into an interesting and challenging hybrid form of governance. While civil society organizations have long been active in pursuing sustainable and safe seafood production, the development of formal non-state based certification provides both opportunities and challenges, and opens up interesting debates over hybrid forms of governance. This paper explores these developments in coastal marine resources management, focusing on aquaculture and the development and operation of the Aquaculture Stewardship Council. It examines the case of salmonid aquaculture in Tasmania, Australia, now Australia's most valuable seafood industry, which remains the focus of considerable community debate over its siting, operation and environmental impact. Copyright © 2017 Elsevier Ltd. All rights reserved.

DNA vaccines for aquacultured fish

DEFF Research Database (Denmark)

Lorenzen, Niels; LaPatra, S.E.

2005-01-01

of licensing and public acceptance of the technology. The potential benefits of DNA vaccines for farmed fish include improved animal welfare, reduced environmental impacts of aquaculture activities, increased food quality and quantity, and more sustainable production. Testing under commercial production......Deoxyribonucleic acid (DNA) vaccination is based on the administration of the gene encoding the vaccine antigen, rather than the antigen itself. Subsequent expression of the antigen by cells in the vaccinated hosts triggers the host immune system. Among the many experimental DNA vaccines tested...... in various animal species as well as in humans, the vaccines against rhabdovirus diseases in fish have given some of the most promising results. A single intramuscular (IM) injection of microgram amounts of DNA induces rapid and long-lasting protection in farmed salmonids against economically important...

Recent Advances in Microbial Single Cell Genomics Technology and Applications

Science.gov (United States)

Stepanauskas, R.

2016-02-01

Single cell genomics is increasingly utilized as a powerful tool to decipher the metabolic potential, evolutionary histories and in situ interactions of environmental microorganisms. This transformative technology recovers extensive information from cultivation-unbiased samples of individual, unicellular organisms. Thus, it does not require data binning into arbitrary phylogenetic or functional groups and therefore is highly compatible with agent-based modeling approaches. I will present several technological advances in this field, which significantly improve genomic data recovery from individual cells and provide direct linkages between cell's genomic and phenotypic properties. I will also demonstrate how these new technical capabilities help understanding the metabolic potential and viral infections of the "microbial dark matter" inhabiting aquatic and subsurface environments.

The Application of Integrated Multi Trophic Aquaculture (IMTA Using Stratified Double Net Rounded Cage (SDFNC for Aquaculture Sustainability

Directory of Open Access Journals (Sweden)

Sapto P. Putro

2015-12-01

Full Text Available The increase of fishery production nationally and internationally may impact on the potential emergence of a variety of environmental problems. The application of sustainable aquaculture is urgently needed by breeding fish for commercial purposes in a manner such that it has a minimum impact on the environment, contributing to the development of local communities and generating economic benefits. The design of the cage and farming practice in aquaculture activities are the important steps to ensure that farming activity is still observed in order to anticipate the risk of organic enrichment caused by the activities. The application of Integrated Multi-Trophic Aquaculture  (IMTA on the Stratified Double Floating Net Cage  (SDFNC integrated with biomonitoring are an appropriate solution to the ongoing productive farming practices. IMTA is an aquaculture practice using more than one species of biotas which have ecologically mutual relationship as a part of the food chain in the area at the same time. The application of IMTA allows farmers to get several aquaculture products in the same area without increasing the horizontal area of the farms. At first, the SDFNC has been applied for farming Cyprinus carpio and Tilapia niloticus as polyculture system in freshwater ecosystem of Rawapening Lake, Central Java. Its operation has been able to increase the production capacity of at least 75% of conventional cages. The application of SDFNC-IMTA using milkfish (Chanos Chanos, seaweed (Kappaphycus alvarezii, and white shrimp (Litopenaeus vannamei has been able to minimize the impact and maintain the water ecosystem in the Gulf Awerange, South Sulawesi.

Contact zoonosis related to aquaculture: a growing concern

Science.gov (United States)

Aquaculture develops fast worldwide, with new cultured species and increased global transport of live aquaculture products. There is a growing recognition of zoonotic disease agents causing epidemics and carrier states in cultured fish and shellfish, especially from warm water systems, transmitted t...

Mechanisms of quorum sensing and strategies for quorum sensing disruption in aquaculture pathogens.

Science.gov (United States)

Zhao, J; Chen, M; Quan, C S; Fan, S D

2015-09-01

In many countries, infectious diseases are a considerable threat to aquaculture. The pathogenicity of micro-organisms that infect aquaculture systems is closely related to the release of virulence factors and the formation of biofilms, both of which are regulated by quorum sensing (QS). Thus, QS disruption is a potential strategy for preventing disease in aquaculture systems. QS inhibitors (QSIs) not only inhibit the expression of virulence-associated genes but also attenuate the virulence of aquaculture pathogens. In this review, we discuss QS systems in important aquaculture pathogens and focus on the relationship between QS mechanisms and bacterial virulence in aquaculture. We further elucidate QS disruption strategies for targeting aquaculture pathogens. Four main types of QSIs that target aquaculture pathogens are discussed based on their mechanisms of action. © 2014 John Wiley & Sons Ltd.

Antimicrobial use in aquaculture re-examined: its relevance to antimicrobial resistance and to animal and human health.

Science.gov (United States)

Cabello, Felipe C; Godfrey, Henry P; Tomova, Alexandra; Ivanova, Larisa; Dölz, Humberto; Millanao, Ana; Buschmann, Alejandro H

2013-07-01

The worldwide growth of aquaculture has been accompanied by a rapid increase in therapeutic and prophylactic usage of antimicrobials including those important in human therapeutics. Approximately 80% of antimicrobials used in aquaculture enter the environment with their activity intact where they select for bacteria whose resistance arises from mutations or more importantly, from mobile genetic elements containing multiple resistance determinants transmissible to other bacteria. Such selection alters biodiversity in aquatic environments and the normal flora of fish and shellfish. The commonality of the mobilome (the total of all mobile genetic elements in a genome) between aquatic and terrestrial bacteria together with the presence of residual antimicrobials, biofilms, and high concentrations of bacteriophages where the aquatic environment may also be contaminated with pathogens of human and animal origin can stimulate exchange of genetic information between aquatic and terrestrial bacteria. Several recently found genetic elements and resistance determinants for quinolones, tetracyclines, and β-lactamases are shared between aquatic bacteria, fish pathogens, and human pathogens, and appear to have originated in aquatic bacteria. Excessive use of antimicrobials in aquaculture can thus potentially negatively impact animal and human health as well as the aquatic environment and should be better assessed and regulated. © 2013 John Wiley & Sons Ltd and Society for Applied Microbiology.

Aquaculture Thesaurus: Descriptors Used in the National Aquaculture Information System.

Science.gov (United States)

Lanier, James A.; And Others

This document provides a listing of descriptors used in the National Aquaculture Information System (NAIS), a computer information storage and retrieval system on marine, brackish, and freshwater organisms. Included are an explanation of how to use the document, subject index terms, and a brief bibliography of the literature used in developing the…

Feed Additives for Aquaculture and Aquarium Culture

OpenAIRE

Barata, Eduardo N.; Velez, Zélia

2011-01-01

The presente invention refers of feed additives for aquaculture and aquarium culture. These additives comprise the amino acid, 1-methyl-L-tryptophane, or its isomers with the objective of improving the attractiveness of feeds used in aquaculture and aquaria for fish, as well as other aquatic organisms, under culture conditions. Therefore, this invention has applications in the agriculture-food industry.

Carbon amendment stimulates benthic nitrogen cycling during the bioremediation of particulate aquaculture waste

Science.gov (United States)

Robinson, Georgina; MacTavish, Thomas; Savage, Candida; Caldwell, Gary S.; Jones, Clifford L. W.; Probyn, Trevor; Eyre, Bradley D.; Stead, Selina M.

2018-03-01

The treatment of organic wastes remains one of the key sustainability challenges facing the growing global aquaculture industry. Bioremediation systems based on coupled bioturbation-microbial processing offer a promising route for waste management. We present, for the first time, a combined biogeochemical-molecular analysis of the short-term performance of one such system that is designed to receive nitrogen-rich particulate aquaculture wastes. Using sea cucumbers (Holothuria scabra) as a model bioturbator we provide evidence that adjusting the waste C : N from 5 : 1 to 20 : 1 promoted a shift in nitrogen cycling pathways towards the dissimilatory nitrate reduction to ammonium (DNRA), resulting in net NH4+ efflux from the sediment. The carbon amended treatment exhibited an overall net N2 uptake, whereas the control receiving only aquaculture waste exhibited net N2 production, suggesting that carbon supplementation enhanced nitrogen fixation. The higher NH4+ efflux and N2 uptake was further supported by meta-genome predictions that indicate that organic-carbon addition stimulated DNRA over denitrification. These findings indicate that carbon addition may potentially result in greater retention of nitrogen within the system; however, longer-term trials are necessary to determine whether this nitrogen retention is translated into improved sea cucumber biomass yields. Whether this truly constitutes a remediation process is open for debate as there remains the risk that any increased nitrogen retention may be temporary, with any subsequent release potentially raising the eutrophication risk. Longer and larger-scale trials are required before this approach may be validated with the complexities of the in-system nitrogen cycle being fully understood.

Aquaculture in mangrove environment

Digital Repository Service at National Institute of Oceanography (India)

Parulekar, A.H.

vegetation forms an integral part of most productive and presently underutilised coastal ecosystem. It needs to be used in controlled manner. This would offer immense opportunities for generating food resources through aquaculture...

Isolation, Identification, and Optimization of Culture Conditions of a Bioflocculant-Producing Bacterium Bacillus megaterium SP1 and Its Application in Aquaculture Wastewater Treatment.

Science.gov (United States)

Luo, Liang; Zhao, Zhigang; Huang, Xiaoli; Du, Xue; Wang, Chang'an; Li, Jinnan; Wang, Liansheng; Xu, Qiyou

2016-01-01

A bioflocculant-producing bacterium, Bacillus megaterium SP1, was isolated from biofloc in pond water and identified by using both 16S rDNA sequencing analysis and a Biolog GEN III MicroStation System. The optimal carbon and nitrogen sources for Bacillus megaterium SP1 were 20 g L -1 of glucose and 0.5 g L -1 of beef extract at 30°C and pH 7. The bioflocculant produced by strain SP1 under optimal culture conditions was applied into aquaculture wastewater treatment. The removal rates of chemical oxygen demand (COD), total ammonia nitrogen (TAN), and suspended solids (SS) in aquaculture wastewater reached 64, 63.61, and 83.8%, respectively. The volume of biofloc (FV) increased from 4.93 to 25.97 mL L -1 . The addition of Bacillus megaterium SP1 in aquaculture wastewater could effectively improve aquaculture water quality, promote the formation of biofloc, and then form an efficient and healthy aquaculture model based on biofloc technology.

Possibilities for marker-assisted selection in aquaculture breeding schemes

International Nuclear Information System (INIS)

Sonesson, A.K.

2007-01-01

FAO estimates that there are around 200 species in aquaculture. However, only a few species have ongoing selective breeding programmes. Marker-assisted selection (MAS) is not used in any aquaculture breeding scheme today. The aim of this chapter, therefore, is to review briefly the current status of aquaculture breeding schemes and to evaluate the possibilities for MAS of aquaculture species. Genetic marker maps have been published for some species in culture. The marker density of these maps is, in general, rather low and the maps are composed of many amplified fragment length polymorphism (AFLP) markers anchored to few microsatellites. Some quantitative trait loci (QTL) have been identified for economically important traits, but they are not yet mapped at a high density. Computer simulations of within-family MAS schemes show a very high increase in genetic gain compared with conventional family-based breeding schemes, mainly due to the large family sizes that are typical for aquaculture breeding schemes. The use of genetic markers to identify individuals and their implications for breeding schemes with control of inbreeding are discussed. (author)

Research study on analysis/use technologies of genome information; Genome joho kaidoku riyo gijutsu no chosa kenkyu

Energy Technology Data Exchange (ETDEWEB)

NONE

1997-03-01

For wide use of genome information in the industrial field, the required R and D was surveyed from the standpoints of biology and information science. To clarify the present state and issues of the international research on genome analysis, the genome map as well as sequence and function information are first surveyed. The current analysis/use technologies of genome information are analyzed, and the following are summarized: prediction and identification of gene regions in genome sequences, techniques for searching and selecting useful genes, and techniques for predicting the expression of gene functions and the gene-product structure and functions. It is recommended that R and D and data collection/interpretation necessary to clarify inter-gene interactions and information networks should be promoted by integrating Japanese advanced know-how and technologies. As examples of the impact of the research results on industry and society, the present state and future expected effect are summarized for medicines, diagnosis/analysis instruments, chemicals, foods, agriculture, fishery, animal husbandry, electronics, environment and information. 278 refs., 42 figs., 5 tabs.

Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants.

Directory of Open Access Journals (Sweden)

Jiang Du

2009-07-01

Full Text Available The goal of human genome re-sequencing is obtaining an accurate assembly of an individual's genome. Recently, there has been great excitement in the development of many technologies for this (e.g. medium and short read sequencing from companies such as 454 and SOLiD, and high-density oligo-arrays from Affymetrix and NimbelGen, with even more expected to appear. The costs and sensitivities of these technologies differ considerably from each other. As an important goal of personal genomics is to reduce the cost of re-sequencing to an affordable point, it is worthwhile to consider optimally integrating technologies. Here, we build a simulation toolbox that will help us optimally combine different technologies for genome re-sequencing, especially in reconstructing large structural variants (SVs. SV reconstruction is considered the most challenging step in human genome re-sequencing. (It is sometimes even harder than de novo assembly of small genomes because of the duplications and repetitive sequences in the human genome. To this end, we formulate canonical problems that are representative of issues in reconstruction and are of small enough scale to be computationally tractable and simulatable. Using semi-realistic simulations, we show how we can combine different technologies to optimally solve the assembly at low cost. With mapability maps, our simulations efficiently handle the inhomogeneous repeat-containing structure of the human genome and the computational complexity of practical assembly algorithms. They quantitatively show how combining different read lengths is more cost-effective than using one length, how an optimal mixed sequencing strategy for reconstructing large novel SVs usually also gives accurate detection of SNPs/indels, how paired-end reads can improve reconstruction efficiency, and how adding in arrays is more efficient than just sequencing for disentangling some complex SVs. Our strategy should facilitate the sequencing of

Towards sustainable coexistence of aquaculture and fisheries in the coastal zone

DEFF Research Database (Denmark)

Bergh, Øjvind; Gomez, Emma Bello; Børsheim, Knut Yngve

2012-01-01

Globally, coastal areas are subject to an increase in competing activities. Coastal fisheries and aquaculture are highly dependent on availability and accessibility of appropriate sites. Aquaculture production is increasing, whereas fisheries are at best stagnant. Coastal activities also include ......, both industries represent human activities strongly influencing, and influenced by, the environment. Management of aquaculture and fisheries, as well as other uses of the coastal zone, should be considered integral parts with local variations in their respective importance.......Globally, coastal areas are subject to an increase in competing activities. Coastal fisheries and aquaculture are highly dependent on availability and accessibility of appropriate sites. Aquaculture production is increasing, whereas fisheries are at best stagnant. Coastal activities also include...

Antibiotic Resistance of Diverse Bacteria from Aquaculture in Borneo

Directory of Open Access Journals (Sweden)

M. M. Kathleen

2016-01-01

Full Text Available The administration of antimicrobials in aquaculture provides a selective pressure creating a reservoir of multiple resistant bacteria in the cultured fish and shrimps as well as the aquaculture environment. The objective of this study was to determine the extent of antibiotic resistance in aquaculture products and aquaculture’s surrounding environment in Sarawak, Malaysian Borneo. Ninety-four identified bacterial isolates constituted of 17 genera were isolated from sediment, water, and cultured organisms (fish and shrimp in selected aquaculture farms. These isolates were tested for their antibiotic resistance against 22 antibiotics from several groups using the disk diffusion method. The results show that the highest resistance was observed towards streptomycin (85%, n=20, while the lowest resistance was towards gentamicin (1.1%, n=90. The multiple antibiotic resistant (MAR index of the isolates tested ranged between 0 and 0.63. It was suggested that isolates with MAR index > 0.2 were recovered from sources with high risk of antibiotic resistant contamination. This study revealed low level of antibiotic resistance in the aquaculture bacterial isolates except for streptomycin and ampicillin (>50% resistance, n=94 which have been used in the aquaculture industry for several decades. Antibiotic resistant patterns should be continuously monitored to predict the emergence and widespread of MAR. Effective action is needed to keep the new resistance from further developing and spreading.

Japanese aquaculture with thermal water from power plants

International Nuclear Information System (INIS)

Kuroda, T.

1977-01-01

The present level of thermal aquaculture, utilizing thermal water which is waste cooling water from nuclear power plant, in Japan is reported. There are 13 major potential areas for thermal aquaculture in cooperation with conventional type thermal power plants, seven of which are actually operating. Aquaculture facilities of all these are on land, none in the sea. Of these seven centers, those that have already commercialized their nursery methods or are approaching that stage of research and development, are Tohoku Hatsuden Kogyo Ltd., Tsuruga Hama Land Ltd. and Kyushu Rinsan Ltd. Major problems faced specialists in Japanese thermal aquaculture are water temperature, water quality, radioactivity and costs. For keeping the water temperature constant all seasons, cooling or heating by natural sea water may be used. Even negligible amounts of radioactivity that nuclear power plants release into the sea will concentrate in the systems of marine life. A strict precautionary checking routine is used to detect radioactivity in marine life. (Kobatake, H.)

Safety in Aquaculture

Science.gov (United States)

Durborow, Robert M.; Myers, Melvin L.

2016-01-01

In this article, occupational safety interventions for agriculture-related jobs, specifically in aquaculture, are reviewed. Maintaining quality of life and avoiding economic loss are two areas in which aquaculturists can benefit by incorporating safety protocols and interventions on their farms. The information in this article is based on farm…

Can greening of aquaculture sequester blue carbon?

Science.gov (United States)

Ahmed, Nesar; Bunting, Stuart W; Glaser, Marion; Flaherty, Mark S; Diana, James S

2017-05-01

Globally, blue carbon (i.e., carbon in coastal and marine ecosystems) emissions have been seriously augmented due to the devastating effects of anthropogenic pressures on coastal ecosystems including mangrove swamps, salt marshes, and seagrass meadows. The greening of aquaculture, however, including an ecosystem approach to Integrated Aquaculture-Agriculture (IAA) and Integrated Multi-Trophic Aquaculture (IMTA) could play a significant role in reversing this trend, enhancing coastal ecosystems, and sequestering blue carbon. Ponds within IAA farming systems sequester more carbon per unit area than conventional fish ponds, natural lakes, and inland seas. The translocation of shrimp culture from mangrove swamps to offshore IMTA could reduce mangrove loss, reverse blue carbon emissions, and in turn increase storage of blue carbon through restoration of mangroves. Moreover, offshore IMTA may create a barrier to trawl fishing which in turn could help restore seagrasses and further enhance blue carbon sequestration. Seaweed and shellfish culture within IMTA could also help to sequester more blue carbon. The greening of aquaculture could face several challenges that need to be addressed in order to realize substantial benefits from enhanced blue carbon sequestration and eventually contribute to global climate change mitigation.

[Current advances and future prospects of genome editing technology in the field of biomedicine.

Science.gov (United States)

Sakuma, Tetsushi

Genome editing technology can alter the genomic sequence at will, contributing the creation of cellular and animal models of human diseases including hereditary disorders and cancers, and the generation of the mutation-corrected human induced pluripotent stem cells for ex vivo regenerative medicine. In addition, novel approaches such as drug development using genome-wide CRISPR screening and cancer suppression using epigenome editing technology, which can change the epigenetic modifications in a site-specific manner, have also been conducted. In this article, I summarize the current advances and future prospects of genome editing technology in the field of biomedicine.

Alien species in aquaculture and biodiversity: a paradox in food production.

Science.gov (United States)

De Silva, Sena S; Nguyen, Thuy T T; Turchini, Giovanni M; Amarasinghe, Upali S; Abery, Nigel W

2009-02-01

Aquaculture is seen as an alternative to meeting the widening gap in global rising demand and decreasing supply for aquatic food products. Asia, the epicenter of the global aquaculture industry, accounts for over 90% of the global aquaculture production quantity and about 80% of the value. Asian aquaculture, as with global aquaculture, is dependent to a significant extent on alien species, as is the case for all the major food crops and husbanded terrestrial animals. However, voluntary and or accidental introduction of exotic aquatic species (alien species) is known to negatively impact local biodiversity. In this relatively young food production industry, mitigating the dependence on alien species, and thereby minimizing potential negative impacts on biodiversity, is an imperative for a sustainable future. In this context an attempt is made in this synthesis to understand such phenomena, especially with reference to Asian inland finfish, the mainstay of global aquaculture production. It is pointed out that there is potential for aquaculture, which is becoming an increasingly important food production process, not to follow the past path of terrestrial food crops and husbanded animals in regard to their negative influences on biodiversity.

Nutrient removal from Chinese coastal waters by large-scale seaweed aquaculture

KAUST Repository

Xiao, Xi

2017-04-21

China is facing intense coastal eutrophication. Large-scale seaweed aquaculture in China is popular, now accounting for over 2/3\\'s of global production. Here, we estimate the nutrient removal capability of large-scale Chinese seaweed farms to determine its significance in mitigating eutrophication. We combined estimates of yield and nutrient concentration of Chinese seaweed aquaculture to quantify that one hectare of seaweed aquaculture removes the equivalent nutrient inputs entering 17.8 ha for nitrogen and 126.7 ha for phosphorus of Chinese coastal waters, respectively. Chinese seaweed aquaculture annually removes approximately 75,000 t nitrogen and 9,500 t phosphorus. Whereas removal of the total N inputs to Chinese coastal waters requires a seaweed farming area 17 times larger than the extant area, one and a half times more of the seaweed area would be able to remove close to 100% of the P inputs. With the current growth rate of seaweed aquaculture, we project this industry will remove 100% of the current phosphorus inputs to Chinese coastal waters by 2026. Hence, seaweed aquaculture already plays a hitherto unrealized role in mitigating coastal eutrophication, a role that may be greatly expanded with future growth of seaweed aquaculture.

Nutrient removal from Chinese coastal waters by large-scale seaweed aquaculture

KAUST Repository

Xiao, Xi; Agusti, Susana; Lin, Fang; Li, Ke; Pan, Yaoru; Yu, Yan; Zheng, Yuhan; Wu, Jiaping; Duarte, Carlos M.

2017-01-01

China is facing intense coastal eutrophication. Large-scale seaweed aquaculture in China is popular, now accounting for over 2/3's of global production. Here, we estimate the nutrient removal capability of large-scale Chinese seaweed farms to determine its significance in mitigating eutrophication. We combined estimates of yield and nutrient concentration of Chinese seaweed aquaculture to quantify that one hectare of seaweed aquaculture removes the equivalent nutrient inputs entering 17.8 ha for nitrogen and 126.7 ha for phosphorus of Chinese coastal waters, respectively. Chinese seaweed aquaculture annually removes approximately 75,000 t nitrogen and 9,500 t phosphorus. Whereas removal of the total N inputs to Chinese coastal waters requires a seaweed farming area 17 times larger than the extant area, one and a half times more of the seaweed area would be able to remove close to 100% of the P inputs. With the current growth rate of seaweed aquaculture, we project this industry will remove 100% of the current phosphorus inputs to Chinese coastal waters by 2026. Hence, seaweed aquaculture already plays a hitherto unrealized role in mitigating coastal eutrophication, a role that may be greatly expanded with future growth of seaweed aquaculture.

7 CFR 1437.303 - Aquaculture, including ornamental fish.

Science.gov (United States)

2010-01-01

... 7 Agriculture 10 2010-01-01 2010-01-01 false Aquaculture, including ornamental fish. 1437.303... ASSISTANCE PROGRAM Determining Coverage Using Value § 1437.303 Aquaculture, including ornamental fish. (a... human consumption as determined by CCC. (2) Fish raised as feed for other fish that are consumed by...

Issues, impacts, and implications of shrimp aquaculture in Thailand

Science.gov (United States)

Dierberg, Forrest E.; Kiattisimkul, Woraphan

1996-09-01

Water quality impacts to and from intensive shrimp aquaculture in Thailand are substantial. Besides the surface and subsurface salinization of freshwaters, loadings of solids, oxygen-consuming organic matter, and nutrients to receiving waters are considerable when the cumulative impacts from water exchange during the growout cycle, pond drainage during harvesting, and illegal pond sediment disposal are taken into account. Although just beginning to be considered in Thailand, partial recirculating and integrated intensive farming systems are producing promising, if somewhat limited, results. By providing on-site treatment of the effluent from the shrimp growout ponds, there is less reliance on using outside water supplies, believed to be the source of the contamination. The explosion in the number of intensively operated shrimp farms has not only impacted the coastal zone of Thailand, but has also resulted in an unsustainable aquaculture industry. Abandonment of shrimp ponds due to either drastic, disease-caused collapses or more grandual, year-to-year reductions in the productivity of the pond is common. To move Thailand towards a more sustainable aquaculture industry and coastal zone environment, integrated aquaculture management is needed. Components of integrated aquaculture management are technical and institutional. The technical components involve deployment of wastewater treatment and minimal water-use systems aimed at making aquaculture operations more hydraulically closed. Before this is possible, technical and economic feasibility studies on enhanced nitrification systems and organic solids removal by oxidation between production cycles and/or the utilization of plastic pond liners need to be conducted. The integration of semi-intensive aquaculture within mangrove areas also should be investigated since mangrove losses attributable to shrimp aquaculture are estimated to be between 16 and 32% of the total mangrove area destroyed betweeen 1979 and 1993

Aquaculture. Teacher Edition.

Science.gov (United States)

Walker, Susan S.

This color-coded guide was developed to assist teachers in helping interested students plan, build, stock, and run aquaculture facilities of varied sizes. The guide contains 15 instructional units, each of which includes some or all of the following basic components: objective sheet, suggested activities for the teacher, instructor supplements,…

Aquaculture Asia, Vol. 7, No. 3, pp.1-60, July - September 2002

OpenAIRE

2002-01-01

CONTENTS: Sustainable Aquaculture - Peter Edwards writes on rural aquaculture: Aquaculture for Poverty Alleviation and Food Security - Part II. Shrimp pond waste management by U Win Latt. The role of rural extension in the sustainable development of Chinese aquaculture by Min Kuanhong. Farmers as Scientists: Diversity enhances profitability and sustainability by M.C. Nandeesha. Properties of Liming Materials by Claude E. Boyd, Mali Boonyaratpalin & Taworn Thunjai. Seed Produc...

Major constraints affecting aquaculture development in Akwa Ibom ...

African Journals Online (AJOL)

The study contributes to nationwide attempts to enhance the contributions of aquaculture to the fishery subsector, and consequent overall gross domestic product of Nigeria, as well as to the protein intake of her citizenry. The focus is on the determination of the magnitude of constraints affecting aquaculture development in ...

Key Performance Characteristics of Organic Shrimp Aquaculture in Southwest Bangladesh

Directory of Open Access Journals (Sweden)

Christian Reinhard Vogl

2012-05-01

Full Text Available In Bangladesh, black tiger shrimp (Penaeus monodon; Fabricius, 1798 aquaculture has come to be one of the most important sectors in both the rural and national economies. Likewise, organic shrimp aquaculture has emerged as an alternative farming enterprise for farmers especially in the southwestern districts of Bangladesh. The present study aims to show key performance characteristics of organic shrimp farmers and farming in a prototypical shrimp farming area in Bangladesh. Data was collected in 2009 from organic shrimp farmers in the Kaligonj and Shyamnagar sub-districts through questionnaire interviews, transect walks and focus group discussions. The mean productivity of organic shrimp farming in the area is 320 kg ha⁻¹ yr⁻¹ (ranging from 120 to 711 kg ha⁻¹year⁻¹. Organic farmers are more likely to have a higher monthly income and less aquaculture experience. Moreover, suitable landholdings and classified labor distribution have been found to play an important role in the development of organic shrimp aquaculture. The most common assets of organic shrimp aquaculture are high yield, low production cost, available post larvae and high market prices. Small business farmers are likely to earn more income benefits from organic shrimp aquaculture than their larger-scale counterparts. Finally, the paper suggests that more research is needed to stimulate the success of organic shrimp aquaculture.

Sécurité alimentaire, pêches et aquaculture en Amazonie bolivienne ...

International Development Research Centre (IDRC) Digital Library (Canada)

2011-03-01

Food security, fisheries and aquaculture in the Bolivian Amazon : final technical report (March 1, 2011 to February 28, 2014). Download PDF. Briefs. Pêches, aquaculture et bien vivre en Bolivie : contributions à la sécurité alimentaire. Download PDF. Briefs. Fisheries, aquaculture and living well in Bolivia : contributions to ...

Aqua-Topics. Aquaculture for Youth and Youth Educators.

Science.gov (United States)

McVey, Eileen

This booklet contains information on aquaculture and ideas for aquaculture projects. The information provided is for students at upper elementary through high school learning levels. Recommended activities at the end of the text are organized by level of difficulty. The activities can be modified depending on area and availability of resources. A…

Bacteriophage interactions with Vibrio anguillarum and the potential for phage therapy in marine aquaculture

DEFF Research Database (Denmark)

Rørbo, Nanna Iben

is widespread in the Vibrio community which underscore the lysogenic phages influence on bacterial evolution and functional properties. Highly genetically similar Vibrio phages, termed H20-like prophages, were isolated across large geographical scales being present both as freeliving phages and as prophages...... in V. anguillarum genomes. The H20-like phages’ widespread presence suggests a mutualistic interaction which selects for co-existence with V. anguillarum. In aquaculture, especially the larvae and fry are vulnerable to pathogens, and they are not susceptible to alternatives to antibiotics, e...

Mooring Design Selection of Aquaculture Cage for Indonesian Ocean

Science.gov (United States)

Mulyadi, Y.; Syahroni, N.; Sambodho, K.; Zikra, M.; Wahyudi; Adia, H. B. P.

2018-03-01

Fish production is important for the economy in fishing community and for ensuring food security. Climate change will lead a threat to fish productivity. Therefore, a solution offered is to cultivate certain fish, especially those with high economic value by using offshore aquaculture technology. A Sea Station cage is one of the offshore aquaculture cage model that has been used in some locations. As a floating structure, the Sea Station cage need a mooring system to maintain its position. This paper presents the selection analysis of the mooring system designs of the Sea Station cage model that it is suitable with Indonesia Ocean. There are 3 mooring configurations that are linear array, rectangular array, and 4 points mooring type. The nylon mooring rope type has been selected to be used on the 3 mooring configurations and the rope has a diameter of 104 mm with a breaking force of 2.3 MN. Based on results from comparing the 3 mooring configurations, the best mooring configuration is linear array with the tension on the rope of 217 KN and has the safety factor of 0.2 based on DNVGL OS-E301

Does aquaculture add resilience to the global food system?

NARCIS (Netherlands)

Troell, M.; Naylor, R.L.; Metian, M.; Beveridge, M.; Tyedmers, P.H.; Folke, C.; Arrow, K.J.; Barrett, S.; Crepin, A.S.; Ehrlich, P.; Gren, R.; Kautsky, N.; Levin, S.A.; Nyborg, K.; Osterblom, H.; Polasky, S.; Scheffer, M.; Walker, B.H.; Xepapadeas, T.; Zeeuw, de A.

2014-01-01

Aquaculture is the fastest growing food sector and continues to expand alongside terrestrial crop and livestock production. Using portfolio theory as a conceptual framework, we explore how current interconnections between the aquaculture, crop, livestock, and fisheries sectors act as an impediment

Hydrogen peroxide decomposition kinetics in aquaculture water

DEFF Research Database (Denmark)

Arvin, Erik; Pedersen, Lars-Flemming

2015-01-01

during the HP decomposition. The model assumes that the enzyme decay is controlled by an inactivation stoichiometry related to the HP decomposition. In order to make the model easily applicable, it is furthermore assumed that the COD is a proxy of the active biomass concentration of the water and thereby......Hydrogen peroxide (HP) is used in aquaculture systems where preventive or curative water treatments occasionally are required. Use of chemical agents can be challenging in recirculating aquaculture systems (RAS) due to extended water retention time and because the agents must not damage the fish...... reared or the nitrifying bacteria in the biofilters at concentrations required to eliminating pathogens. This calls for quantitative insight into the fate of the disinfectant residuals during water treatment. This paper presents a kinetic model that describes the HP decomposition in aquaculture water...

Potential Impact of Mediterranean Aquaculture on the Wild Predatory Bluefish

OpenAIRE

Miralles, Laura; Mrugala, Agata; Sanchez-Jerez, Pablo; Juanes, Francis; Garcia-Vazquez, Eva

2016-01-01

Aquaculture impacts on wild populations of fish have been considered principally due to farm escapes. The Bluefish Pomatomus saltatrix, which exhibits two distinct genetic units in the Mediterranean Sea, is a voracious predator and is attracted to aquaculture cages to prey on farmed fish, particularly Gilthead Seabream Sparus aurata and European Sea Bass Dicentrarchus labrax. We compared the genetic diversity of adult Bluefish caught inside one aquaculture farm located in Spanish waters of th...

Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses.

Science.gov (United States)

Ma, Peng-Fei; Guo, Zhen-Hua; Li, De-Zhu

2012-01-01

Compared to their counterparts in animals, the mitochondrial (mt) genomes of angiosperms exhibit a number of unique features. However, unravelling their evolution is hindered by the few completed genomes, of which are essentially Sanger sequenced. While next-generation sequencing technologies have revolutionized chloroplast genome sequencing, they are just beginning to be applied to angiosperm mt genomes. Chloroplast genomes of grasses (Poaceae) have undergone episodic evolution and the evolutionary rate was suggested to be correlated between chloroplast and mt genomes in Poaceae. It is interesting to investigate whether correlated rate change also occurred in grass mt genomes as expected under lineage effects. A time-calibrated phylogenetic tree is needed to examine rate change. We determined a largely completed mt genome from a bamboo, Ferrocalamus rimosivaginus (Poaceae), through Illumina sequencing of total DNA. With combination of de novo and reference-guided assembly, 39.5-fold coverage Illumina reads were finally assembled into scaffolds totalling 432,839 bp. The assembled genome contains nearly the same genes as the completed mt genomes in Poaceae. For examining evolutionary rate in grass mt genomes, we reconstructed a phylogenetic tree including 22 taxa based on 31 mt genes. The topology of the well-resolved tree was almost identical to that inferred from chloroplast genome with only minor difference. The inconsistency possibly derived from long branch attraction in mtDNA tree. By calculating absolute substitution rates, we found significant rate change (∼4-fold) in mt genome before and after the diversification of Poaceae both in synonymous and nonsynonymous terms. Furthermore, the rate change was correlated with that of chloroplast genomes in grasses. Our result demonstrates that it is a rapid and efficient approach to obtain angiosperm mt genome sequences using Illumina sequencing technology. The parallel episodic evolution of mt and chloroplast

Sécurité alimentaire, pêches et aquaculture en Amazonie bolivienne ...

International Development Research Centre (IDRC) Digital Library (Canada)

2011-03-01

Food security, fisheries and aquaculture in the Bolivian Amazon : final technical report (March 1, 2011 to February 28, 2014). Téléchargez le PDF. Dossiers. Pêches, aquaculture et bien vivre en Bolivie : contributions à la sécurité alimentaire. Téléchargez le PDF. Dossiers. Fisheries, aquaculture and living well in Bolivia ...

Nutrients valorisation via Duckweed-based wastewater treatment and aquaculture

NARCIS (Netherlands)

Mohamed El-Shafai, S.A.A.

2004-01-01

Development of a sustainable wastewater treatment scheme to recycle sewage nutrients and water in tilapia aquaculture was the main objective of this PhD research. Use of an Integrated UASB-duckweed ponds system for domestic wastewater treatment linked to tilapia aquaculture was investigated.

Counter-insurgents of the blue revolution? Parasites and diseases affecting aquaculture and science.

Science.gov (United States)

Blaylock, Reginald B; Bullard, Stephen A

2014-12-01

Aquaculture is the fastest-growing segment of food production and is expected to supply a growing portion of animal protein for consumption by humans. Because industrial aquaculture developed only recently compared to industrial agriculture, its development occurred within the context of a growing environmental awareness and acknowledgment of environmental issues associated with industrial farming. As such, parasites and diseases have become central criticisms of commercial aquaculture. This focus on parasites and diseases, however, has created a nexus of opportunities for research that has facilitated considerable scientific advances in the fields of parasitology and aquaculture. This paper reviews Myxobolus cerebralis , Lepeophtheirus salmonis , white spot syndrome virus, and assorted flatworms as select marquee aquaculture pathogens, summarizes the status of the diseases caused by each and their impacts on aquaculture, and highlights some of the significant contributions these pathogens have made to the science of parasitology and aquaculture.

Public attitudes towards marine aquaculture: A comparative analysis of Germany and Israel

International Nuclear Information System (INIS)

Freeman, Shirra; Vigoda-Gadot, Eran; Sterr, Horst; Schultz, Michael; Korchenkov, Irina; Krost, Peter; Angel, Dror

2012-01-01

We report on bi-national (Germany–Israel) research on relationships between public attitudes, behaviours and preferences related to marine aquaculture. Aquaculture's world-wide market share accounts for over half of all aquatic products. In many places, the sector's explosive growth has outstripped scientific knowledge and governance provisions. Small producers such as Israel and Germany seeking to expand domestic production must address environmental challenges posed by fish farming, stakeholder competition in crowded coastal zones and public/consumer receptiveness. Based on survey data obtained from both the countries, correlation analysis (Pearson's r-statistic) was used to test four hypotheses. Of these, one (positive relationship between coastal tourism and aquaculture attitudes) was supported in both countries. The hypothesis of positive relationships between lifestyle (environment/health) behaviours and aquaculture attitudes was supported only in Germany and the hypothesis of negative relationships between concern for the environment and aquaculture attitudes was supported only in Israel. These results are significant for policy, business, NGO and other stakeholders. Moreover, they point to the importance of this type of comparative research in improving our understanding of local factors influencing attitude-formation and inter-relationships. First, the tourism–aquaculture relationship found indicates potential synergies between two sectors reliant on the coastal zone that should be taken into account by planning authorities. The divergent environment–aquaculture results were especially interesting since in both countries, the primary concern regarding aquaculture expansion was environmental impacts. Closer inspection of the survey results revealed that this relationship may have been influenced by the orientation of environmental concerns in each population. Germans focus on depletion of wildstocks and Israelis on cage effluent and marine pollution

Optimizing Ocean Space: Co-siting Open Ocean Aquaculture

Science.gov (United States)

Cobb, B. L.; Wickliffe, L. C.; Morris, J. A., Jr.

2016-12-01

In January of 2016, NOAA's National Marine Fisheries Service released the Gulf Aquaculture Plan (GAP) to manage the development of environmentally sound and economically sustainable open ocean finfish aquaculture in the Gulf of Mexico (inside the U.S. Exclusive Economic Zone [EEZ]). The GAP provides the first regulatory framework for aquaculture in federal waters with estimated production of 64 million pounds of finfish, and an estimated economic impact of $264 million annually. The Gulf of Mexico is one of the most industrialized ocean basins in the world, with many existing ocean uses including oil and natural gas production, shipping and commerce, commercial fishing operations, and many protected areas to ensure conservation of valuable ecosystem resources and services. NOAA utilized spatial planning procedures and tools identifying suitable sites for establishing aquaculture through exclusion analyses using authoritative federal and state data housed in a centralized geodatabase. Through a highly collaborative, multi-agency effort a mock permitting exercise was conducted to illustrate the regulatory decision-making process for the Gulf. Further decision-making occurred through exploring co-siting opportunities with oil and natural gas platforms. Logistical co-siting was conducted to reduce overall operational costs by looking at distance to major port and commodity tonnage at each port. Importantly, the process of co-siting allows aquaculture to be coupled with other benefits, including the availability of previously established infrastructure and the reduction of environmental impacts.

Does aquaculture add resilience to the global food system?

Science.gov (United States)

Troell, Max; Naylor, Rosamond L.; Metian, Marc; Beveridge, Malcolm; Tyedmers, Peter H.; Folke, Carl; Arrow, Kenneth J.; Barrett, Scott; Crépin, Anne-Sophie; Ehrlich, Paul R.; Gren, Åsa; Kautsky, Nils; Levin, Simon A.; Nyborg, Karine; Österblom, Henrik; Polasky, Stephen; Scheffer, Marten; Walker, Brian H.; Xepapadeas, Tasos; de Zeeuw, Aart

2014-01-01

Aquaculture is the fastest growing food sector and continues to expand alongside terrestrial crop and livestock production. Using portfolio theory as a conceptual framework, we explore how current interconnections between the aquaculture, crop, livestock, and fisheries sectors act as an impediment to, or an opportunity for, enhanced resilience in the global food system given increased resource scarcity and climate change. Aquaculture can potentially enhance resilience through improved resource use efficiencies and increased diversification of farmed species, locales of production, and feeding strategies. However, aquaculture’s reliance on terrestrial crops and wild fish for feeds, its dependence on freshwater and land for culture sites, and its broad array of environmental impacts diminishes its ability to add resilience. Feeds for livestock and farmed fish that are fed rely largely on the same crops, although the fraction destined for aquaculture is presently small (∼4%). As demand for high-value fed aquaculture products grows, competition for these crops will also rise, as will the demand for wild fish as feed inputs. Many of these crops and forage fish are also consumed directly by humans and provide essential nutrition for low-income households. Their rising use in aquafeeds has the potential to increase price levels and volatility, worsening food insecurity among the most vulnerable populations. Although the diversification of global food production systems that includes aquaculture offers promise for enhanced resilience, such promise will not be realized if government policies fail to provide adequate incentives for resource efficiency, equity, and environmental protection. PMID:25136111

Biology, genome organization and evolution of parvoviruses in marine shrimp

Science.gov (United States)

A number of parvoviruses are now know to infect marine shrimp, and these viruses alone or in combination with other viruses have the potential to cause major losses in shrimp aquaculture globally. This review provides a comprehensive overview of the biology, genome organization, gene expression, and...

Aquaculture intérieure et adaptation aux changements climatiques ...

International Development Research Centre (IDRC) Digital Library (Canada)

Risk Management Practices. Briefs. Aquaculture and Climate. Journal articles. River-based cage aquaculture of tilapia in Northern Thailand : sustainability of rearing and business practices. Journal articles. Learning about climate-related risks: decisions of Northern Thailand fish farmers in a role-playing simulation game ...

Potential hazards and risks associated with the aquaculture industry ...

African Journals Online (AJOL)

Aquaculture, the farming of aquatic organisms, is fraught with potential hazards and risks which are categorized into occupational, environmental, food safety and public health. This paper reviewed major hazards and risks associated with the aquaculture industry and proffered strategies for their management and control.

Streptomyces bacteria as potential probiotics in aquaculture

Directory of Open Access Journals (Sweden)

Tan Loh eTeng Hern

2016-02-01

Full Text Available In response to the increased seafood demand from the ever-going human population, aquaculture has become the fastest growing animal food-producing sector. However, the indiscriminate use of antibiotics as a biological control agents for fish pathogens has led to the emergence of antibiotic resistance bacteria. Probiotics are defined as living microbial supplement that exert beneficial effects on hosts as well as improvement of environmental parameters. Probiotics have been proven to be effective in improving the growth, survival and health status of the aquatic livestock. This review aims to highlight the genus Streptomyces can be a good candidate for probiotics in aquaculture. Studies showed that the feed supplemented with Streptomyces could protect fish and shrimp from pathogens as well as increase the growth of the aquatic organisms. Furthermore, the limitations of Streptomyces as probiotics in aquaculture is also highlighted and solutions are discussed to these limitations.

Genetically modified organisms (GMOs) and aquaculture.

Science.gov (United States)

Beardmore, J A; Porter, Joanne S

2003-01-01

This paper reviews the nature of genetically modified organisms (GMOs), the range of aquatic species in which GMOs have been produced, the methods and target genes employed, the benefits to aquaculture, the problems attached to use of GMOs in aquatic species and the regulatory and other social frameworks surrounding them. A set of recommendations aimed at best practice is appended. This states the potential value of GMOs in aquaculture but also calls for improved knowledge particularly of sites of integration, risk analysis, progress in achieving sterility in fish for production and better dissemination of relevant information.

Human Health Consequences of Use of Antimicrobial Agents in Aquaculture

DEFF Research Database (Denmark)

Heuer, Ole Eske; Kruse, H.; Grave, K.

2009-01-01

industry in many regions of the world and the widespread, intensive, and often unregulated use of antimicrobial agents in this area of animal production, efforts are needed to prevent development and spread of antimicrobial resistance in aquaculture to reduce the risk to human health....... in aquaculture, several are classified by the World Health Organisation as critically important for use in humans. Occurrence of resistance to these antimicrobial agents in human pathogens severely limits the therapeutic options in human infections. Considering the rapid growth and importance of aquaculture...... gene transfer and reach human pathogens, or drug-resistant pathogens from the aquatic environment may reach humans directly. Horizontal gene transfer may occur in the aquaculture environment, in the food chain, or in the human intestinal tract. Among the antimicrobial agents commonly used...

Aquaculture: global status and trends.

Science.gov (United States)

Bostock, John; McAndrew, Brendan; Richards, Randolph; Jauncey, Kim; Telfer, Trevor; Lorenzen, Kai; Little, David; Ross, Lindsay; Handisyde, Neil; Gatward, Iain; Corner, Richard

2010-09-27

Aquaculture contributed 43 per cent of aquatic animal food for human consumption in 2007 (e.g. fish, crustaceans and molluscs, but excluding mammals, reptiles and aquatic plants) and is expected to grow further to meet the future demand. It is very diverse and, contrary to many perceptions, dominated by shellfish and herbivorous and omnivorous pond fish either entirely or partly utilizing natural productivity. The rapid growth in the production of carnivorous species such as salmon, shrimp and catfish has been driven by globalizing trade and favourable economics of larger scale intensive farming. Most aquaculture systems rely on low/uncosted environmental goods and services, so a critical issue for the future is whether these are brought into company accounts and the consequent effects this would have on production economics. Failing that, increased competition for natural resources will force governments to allocate strategically or leave the market to determine their use depending on activities that can extract the highest value. Further uncertainties include the impact of climate change, future fisheries supplies (for competition and feed supply), practical limits in terms of scale and in the economics of integration and the development and acceptability of new bio-engineering technologies. In the medium term, increased output is likely to require expansion in new environments, further intensification and efficiency gains for more sustainable and cost-effective production. The trend towards enhanced intensive systems with key monocultures remains strong and, at least for the foreseeable future, will be a significant contributor to future supplies. Dependence on external feeds (including fish), water and energy are key issues. Some new species will enter production and policies that support the reduction of resource footprints and improve integration could lead to new developments as well as reversing decline in some more traditional systems.

Aquaculture: global status and trends

Science.gov (United States)

Bostock, John; McAndrew, Brendan; Richards, Randolph; Jauncey, Kim; Telfer, Trevor; Lorenzen, Kai; Little, David; Ross, Lindsay; Handisyde, Neil; Gatward, Iain; Corner, Richard

2010-01-01

Aquaculture contributed 43 per cent of aquatic animal food for human consumption in 2007 (e.g. fish, crustaceans and molluscs, but excluding mammals, reptiles and aquatic plants) and is expected to grow further to meet the future demand. It is very diverse and, contrary to many perceptions, dominated by shellfish and herbivorous and omnivorous pond fish either entirely or partly utilizing natural productivity. The rapid growth in the production of carnivorous species such as salmon, shrimp and catfish has been driven by globalizing trade and favourable economics of larger scale intensive farming. Most aquaculture systems rely on low/uncosted environmental goods and services, so a critical issue for the future is whether these are brought into company accounts and the consequent effects this would have on production economics. Failing that, increased competition for natural resources will force governments to allocate strategically or leave the market to determine their use depending on activities that can extract the highest value. Further uncertainties include the impact of climate change, future fisheries supplies (for competition and feed supply), practical limits in terms of scale and in the economics of integration and the development and acceptability of new bio-engineering technologies. In the medium term, increased output is likely to require expansion in new environments, further intensification and efficiency gains for more sustainable and cost-effective production. The trend towards enhanced intensive systems with key monocultures remains strong and, at least for the foreseeable future, will be a significant contributor to future supplies. Dependence on external feeds (including fish), water and energy are key issues. Some new species will enter production and policies that support the reduction of resource footprints and improve integration could lead to new developments as well as reversing decline in some more traditional systems. PMID:20713392

Inland Aquaculture and Adaptation to Climate Change in Northern ...

International Development Research Centre (IDRC) Digital Library (Canada)

Documents. Modeling the effects of weather and climate on thermal stratification and the risks of low dissolved oxygen episodes in aquaculture ponds. Documents. Impacts of climate change and water uses on availability of water for aquaculture in the Lower Nan Basin. Documents. The role of middlemen networks and ...

Use of sunlight to degrade oxytetracycline in marine aquaculture's waters

International Nuclear Information System (INIS)

Leal, J.F.; Esteves, V.I.; Santos, E.B.H.

2016-01-01

Oxytracycline (OTC) is a broad spectrum antibiotic authorized for use in European aquaculture. Its photo-degradation has been widely studied in synthetic aqueous solutions, sometimes resorting to expensive methods and without proven effectiveness in natural waters. Thus, this work studied the possibility to apply the solar photo-degradation for removal of OTC from marine aquaculture's waters. For that, water samples were collected at different locals of the water treatment circuit, from two different aquaculture companies. Water samples were firstly characterized regarding to pH, salinity, total suspended solids (TSS), organic carbon and UV–Vis spectroscopic characteristics. Then, the samples were spiked with OTC and irradiated using simulated sunlight in order to evaluate the matrix effects on OTC photo-degradation. From kinetic results, the apparent quantum yields and the outdoor half-life times, at 40°N for midsummer and midwinter days were estimated by the first time for these conditions. For a midsummer day, at sea level, the outdoor half-life time predicted for OTC in these aquaculture's waters ranged between 21 and 25 min. Additionally, the pH and salinity effects on the OTC photo-degradation were evaluated and it has been shown that high pH values and the presence of sea salt increase the OTC photo-degradation rate in aquaculture's waters, compared to results in deionised water. The results are very promising to apply this low-cost methodology using the natural sunlight in aquaculture's waters to remove OTC. - Highlights: • Oxytetracycline (OTC) is one of the most used antibiotics in aquaculture. • OTC photolysis in marine aquaculture's water is faster than in deionised water. • The sunlight radiation quickly remove the OTC from aquaculture's water. • Outdoor half-life for a midsummer day is 21–25 min in aquaculture's water. • High pH's and salinities increase the OTC photo-degradation. - This work

Genome-editing technologies and their potential application in horticultural crop breeding

Science.gov (United States)

Xiong, Jin-Song; Ding, Jing; Li, Yi

2015-01-01

Plant breeding, one of the oldest agricultural activities, parallels human civilization. Many crops have been domesticated to satisfy human's food and aesthetical needs, including numerous specialty horticultural crops such as fruits, vegetables, ornamental flowers, shrubs, and trees. Crop varieties originated through selection during early human civilization. Other technologies, such as various forms of hybridization, mutation, and transgenics, have also been invented and applied to crop breeding over the past centuries. The progress made in these breeding technologies, especially the modern biotechnology-based breeding technologies, has had a great impact on crop breeding as well as on our lives. Here, we first review the developmental process and applications of these technologies in horticultural crop breeding. Then, we mainly describe the principles of the latest genome-editing technologies and discuss their potential applications in the genetic improvement of horticultural crops. The advantages and challenges of genome-editing technologies in horticultural crop breeding are also discussed. PMID:26504570

Success Stories in Asian Aquaculture | CRDI - Centre de recherches ...

International Development Research Centre (IDRC) Digital Library (Canada)

13 oct. 2009 ... Sena S. De Silva is Director General of the Network of Aquaculture Centres in Asia- Pacific and Honorary Professor of Aquaculture and Fisheries Biology at the School of Life and Environmental Sciences, Deakin University, Victoria, Australia. F. Brian Davy is Senior Fellow at the International Institute for ...

Monitoring and managing microbes in aquaculture - Towards a sustainable industry

DEFF Research Database (Denmark)

Bentzon-Tilia, Mikkel; Sonnenschein, Eva; Gram, Lone

2016-01-01

protect fish and larvae against disease. Hence, monitoring and manipulating the microbial communities in aquaculture environments hold great potential; both in terms of assessing and improving water quality, but also in terms of controlling the development of microbial infections. Using microbial...... communities to monitor water quality and to efficiently carry out ecosystem services within the aquaculture systems may only be a few years away. Initially, however, we need to thoroughly understand the microbiomes of both healthy and diseased aquaculture systems, and we need to determine how to successfully...

Promoting Women Participation in Aquaculture as a Viable Tool for ...

African Journals Online (AJOL)

Promoting Women Participation in Aquaculture as a Viable Tool for Poverty Alleviation in the Rural Areas of Nigeria. ... Open Access DOWNLOAD FULL TEXT ... a source of income, also the paper focus on the roles of women in aquaculture, ...

Site-Specific Integration of Exogenous Genes Using Genome Editing Technologies in Zebrafish

Directory of Open Access Journals (Sweden)

Atsuo Kawahara

2016-05-01

Full Text Available The zebrafish (Danio rerio is an ideal vertebrate model to investigate the developmental molecular mechanism of organogenesis and regeneration. Recent innovation in genome editing technologies, such as zinc finger nucleases (ZFNs, transcription activator-like effector nucleases (TALENs and the clustered regularly interspaced short palindromic repeats (CRISPR/CRISPR associated protein 9 (Cas9 system, have allowed researchers to generate diverse genomic modifications in whole animals and in cultured cells. The CRISPR/Cas9 and TALEN techniques frequently induce DNA double-strand breaks (DSBs at the targeted gene, resulting in frameshift-mediated gene disruption. As a useful application of genome editing technology, several groups have recently reported efficient site-specific integration of exogenous genes into targeted genomic loci. In this review, we provide an overview of TALEN- and CRISPR/Cas9-mediated site-specific integration of exogenous genes in zebrafish.

Marine Spatial Planning Makes Room for Offshore Aquaculture in a Crowded Coastal Zone

Science.gov (United States)

Stevens, J.

2016-12-01

Offshore aquaculture is an emerging industry predicted to contribute significantly to global seafood production and food security. However, aquaculture farms can generate conflicts by displacing existing ocean user groups and impacting ecosystems. Further, there are multiple farm types with different seafood species, productivity levels and impacts. Thus, it is important to strategically and simultaneously plan farm type and location in relation to the seascape in order to most effectively maximize aquaculture value while also minimizing conflicts and environmental impacts. We address this problem and demonstrate the value of multi-objective planning with a case study that integrates bioeconomic modeling with ecosystem service tradeoff analysis to inform the marine spatial planning (MSP) of mussel, finfish and kelp aquaculture farms in the already-crowded Southern California Bight (SCB) ecosystem. We considered four user groups predicted to conflict with or be impacted by the three types of aquaculture: wild-capture fisheries, ocean viewshed from coastal properties, marine benthic habitat protection, and risk of disease outbreak between farms. Results indicate that significant conflicts and impacts, expected under conventional planning, can be reduced by strategic planning. For example, 28% of potential mussel farm sites overlap with wild-capture halibut fishery grounds, yet MSP can enable mussel aquaculture to generate up to a third of its total potential industry value without impacting halibut fishery yield. Results also highlight hotspot areas in the SCB most appropriate for each type of aquaculture under MSP, as well as particular mussel, finfish and kelp aquaculture spatial plans that align with legislative regulations on allowable impacts from future aquaculture farms in California. This study comprehensively informs aquaculture farm design in the SCB, and demonstrates the value of multi-objective simultaneous planning as a key component in MSP.

The ethical introduction of genome-based information and technologies into public health.

Science.gov (United States)

Howard, H C; Swinnen, E; Douw, K; Vondeling, H; Cassiman, J-J; Cambon-Thomsen, A; Borry, P

2013-01-01

With the human genome project running from 1989 until its completion in 2003, and the incredible advances in sequencing technology and in bioinformatics during the last decade, there has been a shift towards an increase focus on studying common complex disorders which develop due to the interplay of many different genes as well as environmental factors. Although some susceptibility genes have been identified in some populations for disorders such as cancer, diabetes and cardiovascular diseases, the integration of this information into the health care system has proven to be much more problematic than for single gene disorders. Furthermore, with the 1000$ genome supposedly just around the corner, and whole genome sequencing gradually being integrated into research protocols as well as in the clinical context, there is a strong push for the uptake of additional genomic testing. Indeed, the advent of public health genomics, wherein genomics would be integrated in all aspects of health care and public health, should be taken seriously. Although laudable, these advances also bring with them a slew of ethical and social issues that challenge the normative frameworks used in clinical genetics until now. With this in mind, we highlight herein 5 principles that are used as a primer to discuss the ethical introduction of genome-based information and genome-based technologies into public health. Copyright © 2013 S. Karger AG, Basel.

DIAGNOSIS OF AQUACULTURE IN THE MUNICIPALITY OF ALVARADO VERACRUZ, MEXICO

Directory of Open Access Journals (Sweden)

Lenin Rangel-López

2014-07-01

Full Text Available This research aims to analyze the current situation of aquaculture farms in the Municipality of Alvarado, Veracruz, Mexico. During this study, 29 interviews were conducted aimed to the units of aquaculture producers; 24 variables were analyzed within the aspects of the socio-economic, technical, marketing and legal framework. The most relevant results within the legal framework: 21% of units has “National Registration of Fisheries and Aquaculture” (RNPyA and 7% has “Federal Taxpayer Register” (RFC; in the socio-economic aspects: 187 jobs are generated; on technical aspects: the average area for cultivation is 410.11 ha, 79% of production is Tilapia (Oreochromis spp.. The aquaculture activity on Alvarado, Veracruz, it is in a learning process, therefore strategies are needed in order to the development of the activity and increasing production; improving cultivation methodologies and training producers on managing their aquaculture units.

Future challanges for the maturing Norwegian salmon aquaculture industry

DEFF Research Database (Denmark)

Asche, Frank; Guttormsen, Atle G.; Nielsen, Rasmus

2013-01-01

In this paper, we analyze total factor productivity change in the Norwegian salmon aquaculture sector from 1996 to 2008. During this period, the production has on average been growing with 8% per year. At the same time, the price of salmon has stabilized indicating that an increase in demand...... factor to future production growth in the salmon aquaculture industry....

Maintenance of Fish Health in Aquaculture: Review of Epidemiological Approaches for Prevention and Control of Infectious Disease of Fish.

Science.gov (United States)

Assefa, Ayalew; Abunna, Fufa

2018-01-01

Aquaculture is rapidly growing part of agriculture worldwide. It makes up around 44 percent of total fish production globally. This increased growth of production is achieved despite facing many challenges in the aquaculture environment. Among production limiting challenges, the infectious disease takes the lion share by causing multibillion-dollar loss annually. To reduce the impact of the fish disease, it is necessary to address health constraints based on scientifically proven and recommended ways. This review aims at pointing out some of the best approaches to prevention and control of infectious disease in aquaculture. Among the effective prevention and control strategies, vaccination is one of the key practices. Types of vaccines for use in fish include killed vaccines, attenuated vaccines, DNA vaccines, recombinant technology vaccines, and synthetic peptide vaccines. Administration techniques of vaccines in fish include oral, injection, or immersion methods. Antibiotics are also in use in aquaculture despite their side effects in the development of drug resistance by microorganisms. Biological and chemical disease control strategies such as using probiotics, prebiotics, and medicinal plants are widely in use. Biosecurity measures in aquaculture can keep the safety of a facility from certain disease-causing agents that are absent in particular system. Farm-level biosecurity measures include strict quarantine measures, egg disinfection, traffic control, water treatments, clean feed, and disposal of mortalities. In conclusion, rather than trying to treat every disease case, it advisable to follow a preventive approach before the event of any disease outbreaks.

Maintenance of Fish Health in Aquaculture: Review of Epidemiological Approaches for Prevention and Control of Infectious Disease of Fish

Directory of Open Access Journals (Sweden)

Ayalew Assefa

2018-01-01

Full Text Available Aquaculture is rapidly growing part of agriculture worldwide. It makes up around 44 percent of total fish production globally. This increased growth of production is achieved despite facing many challenges in the aquaculture environment. Among production limiting challenges, the infectious disease takes the lion share by causing multibillion-dollar loss annually. To reduce the impact of the fish disease, it is necessary to address health constraints based on scientifically proven and recommended ways. This review aims at pointing out some of the best approaches to prevention and control of infectious disease in aquaculture. Among the effective prevention and control strategies, vaccination is one of the key practices. Types of vaccines for use in fish include killed vaccines, attenuated vaccines, DNA vaccines, recombinant technology vaccines, and synthetic peptide vaccines. Administration techniques of vaccines in fish include oral, injection, or immersion methods. Antibiotics are also in use in aquaculture despite their side effects in the development of drug resistance by microorganisms. Biological and chemical disease control strategies such as using probiotics, prebiotics, and medicinal plants are widely in use. Biosecurity measures in aquaculture can keep the safety of a facility from certain disease-causing agents that are absent in particular system. Farm-level biosecurity measures include strict quarantine measures, egg disinfection, traffic control, water treatments, clean feed, and disposal of mortalities. In conclusion, rather than trying to treat every disease case, it advisable to follow a preventive approach before the event of any disease outbreaks.

An Intelligent Four-Electrode Conductivity Sensor for Aquaculture

OpenAIRE

Zhang , Jiaran; Li , Daoliang; Wang , Cong; Ding , Qisheng

2012-01-01

International audience; Conductivity is regard as a key technical parameter in modern intensive fish farming management. The water conductivity sensors are sophisticated devices used in the aquaculture monitoring field to understand the effects of climate changes on fish ponds. In this paper a new four-electrode smart sensor is proposed for water conductivity measurements of aquaculture monitoring.The main advantages of these sensors include a high precision, a good stability and an intrinsic...

Drama of the commons in small-scale shrimp aquaculture in northwestern, Sri Lanka

Directory of Open Access Journals (Sweden)

Eranga Kokila Galappaththi

2015-03-01

Full Text Available Aquaculture, and shrimp aquaculture in particular, can have major social and environmental impacts. However, aquaculture remains an understudied area in commons research. Can aspects of commons theory be applied to solve problems of aquaculture? We examined three coastal community-based shrimp aquaculture operations in northwestern Sri Lanka using a case study approach. These shrimp farms were individually owned by small producers and managed under local-level rules designed by cooperatives (samithis. The common-pool resource of major interest was water for aquaculture ponds, obtained from an interconnected common water body. We evaluated the shrimp farming social-ecological system by using Ostrom’s design principles for collective action. Key elements of the system were: clearly defined boundaries; collaboratively designed crop calendar, bottom-up approach involving community associations, multi-level governance, and farmers-and-government collaborative structures. Together, these elements resolved the excludability and subtractability problems of commons by establishing boundary and membership rules and collective choice rules.

Remote Sensing Approach for Documenting the Conversion of Mangroves to Aquaculture

Science.gov (United States)

Peneva, E.

2007-12-01

The loss of mangrove forests to aquaculture, particularly shrimp farming, in coastal Thailand presents serious environmental and societal problems. Shrimp farming is one of the fastest growing aquaculture sectors in many parts of the world, as well as one of the most controversial. In spite of considerable work put into understanding the impacts of shrimp aquaculture, few studies provide detailed assessment of the issue through time. This research compares three change detection techniques (Object-based; Change Vector Analysis (CVA); and Integrated GIS and Remote Sensing) in order to assess the mangrove conversion caused by aquaculture development in Krabi Province, Thailand between 1989, 2001 and 2007 using Landsat TM data. All three methods provide valuable information though each has its own merits. Preliminary results show 40% loss of mangroves between 1989 and 2007, 25% of which is to aquaculture development, 10% to urban, and 5% to agricultural land. This study will help establish a methodology that will aid coastal communities in Southeast Asia in determining sustainable land use management approaches.

Public Perceptions of Aquaculture: Evaluating Spatiotemporal Patterns of Sentiment around the World.

Directory of Open Access Journals (Sweden)

Halley E Froehlich

Full Text Available Aquaculture is developing rapidly at a global scale and sustainable practices are an essential part of meeting the protein requirements of the ballooning human population. Locating aquaculture offshore is one strategy that may help address some issues related to nearshore development. However, offshore production is nascent and distinctions between the types of aquatic farming may not be fully understood by the public-important for collaboration, research, and development. Here we evaluate and report, to our knowledge, the first multinational quantification of the relative sentiments and opinions of the public around distinct forms of aquaculture. Using thousands of newspaper headlines (Ntotal = 1,596 from developed (no. countries = 26 and developing (42 nations, ranging over periods of 1984 to 2015, we found an expanding positive trend of general 'aquaculture' coverage, while 'marine' and 'offshore' appeared more negative. Overall, developing regions published proportionally more positive than negative headlines than developed countries. As case studies, government collected public comments (Ntotal = 1,585 from the United States of America (USA and New Zealand mirrored the media sentiments; offshore perception being particularly negative in the USA. We also found public sentiment may be influenced by local environmental disasters not directly related to aquaculture (e.g., oil spills. Both countries voiced concern over environmental impacts, but the concerns tended to be more generalized, rather than targeted issues. Two factors that could be inhibiting informed discussion and decisions about offshore aquaculture are lack of applicable knowledge and actual local development issues. Better communication and investigation of the real versus perceived impacts of aquaculture could aid in clarifying the debate about aquaculture, and help support future sustainable growth.

Solar greenhouse aquaculture

Energy Technology Data Exchange (ETDEWEB)

Toever, W V

1979-01-01

Rainbow and Speckled Trout have been successfully hatched and reared in a recirculating aquaculture system. The system is integrated into the Ark greenhouse providing thermal mass for temperature regulation and supplying nutrient-rich water for plants. The system incorporates bacterial, algal and hydroponic water filtration. Various vegetable crops have been raised in the hydroponic troughs. A scaled-down system suitable for domestic solar greenhouse application is also under development.

A comprehensive survey on selective breeding programs and seed market in the European aquaculture fish industry

DEFF Research Database (Denmark)

Chavanne, Hervé; Janssen, Kasper; Hofherr, Johann

2016-01-01

–50 % market share. Only part of the European fish aquaculture industry today fully exploits selective breeding to the best advantage. A larger impact assessment still needs to be made by the remainder, particularly on the market share of fish seed (eggs, larvae or juveniles) and its consequences for hatchery...... of molecular tools is now common in all programs, mainly for pedigree traceability. An increasing number of programs use either genomic or marker-assisted selection. Results related to the seed production market confirmed that for Atlantic salmon there are a few dominant players at the European level, with 30...

Probiotics as Antiviral Agents in Shrimp Aquaculture

Directory of Open Access Journals (Sweden)

Bestha Lakshmi

2013-01-01

Full Text Available Shrimp farming is an aquaculture business for the cultivation of marine shrimps or prawns for human consumption and is now considered as a major economic and food production sector as it is an increasingly important source of protein available for human consumption. Intensification of shrimp farming had led to the development of a number of diseases, which resulted in the excessive use of antimicrobial agents, which is finally responsible for many adverse effects. Currently, probiotics are chosen as the best alternatives to these antimicrobial agents and they act as natural immune enhancers, which provoke the disease resistance in shrimp farm. Viral diseases stand as the major constraint causing an enormous loss in the production in shrimp farms. Probiotics besides being beneficial bacteria also possess antiviral activity. Exploitation of these probiotics in treatment and prevention of viral diseases in shrimp aquaculture is a novel and efficient method. This review discusses the benefits of probiotics and their criteria for selection in shrimp aquaculture and their role in immune power enhancement towards viral diseases.

Capacity building for sustainable aquaculture and fisheries development in Myanmar

NARCIS (Netherlands)

Steins, N.A.; Bosma, R.H.; Taal, K.; Bolman, B.C.; Bink, E.; Dop, van H.; Dekker, A.; Numan, J.; Spek, van der G.; Pijl, van der W.

2015-01-01

This report presents the results of a Dutch public-private capacity building (Knowledge to Knowledge or K2K) mission for fostering sustainable aquaculture and fisheries development in Myanmar. The objectives of the K2K mission were to: 1) analyse Myanmar’s aquaculture and fisheries knowledge

Design and Application of a Solar Mobile Pond Aquaculture Water Quality-Regulation Machine Based in Bream Pond Aquaculture.

Science.gov (United States)

Liu, Xingguo; Xu, Hao; Ma, Zhuojun; Zhang, Yongjun; Tian, Changfeng; Cheng, Guofeng; Zou, Haisheng; Lu, Shimin; Liu, Shijing; Tang, Rong

2016-01-01

Bream pond aquaculture plays a very important role in China's aquaculture industry and is the main source of aquatic products. To regulate and control pond water quality and sediment, a movable solar pond aquaculture water quality regulation machine (SMWM) was designed and used. This machine is solar-powered and moves on water, and its primary components are a solar power supply device, a sediment lifting device, a mechanism for walking on the water's surface and a control system. The solar power supply device provides power for the machine, and the water walking mechanism drives the machine's motion on the water. The sediment lifting device orbits the main section of the machine and affects a large area of the pond. Tests of the machine's mechanical properties revealed that the minimum illumination necessary for the SMWM to function is 13,000 Lx and that its stable speed on the water is 0.02-0.03 m/s. For an illumination of 13,000-52,500 Lx, the sediment lifting device runs at 0.13-0.35 m/s, and its water delivery capacity is 110-208 m(3)/h. The sediment lifting device is able to fold away, and the angle of the suction chamber can be adjusted, making the machine work well in ponds at different water depths from 0.5 m to 2 m. The optimal distance from the sediment lifting device to the bottom of the pond is 10-15 cm. In addition, adjusting the length of the connecting rod and the direction of the traction rope allows the SMWM to work in a pond water area greater than 80%. The analysis of water quality in Wuchang bream (Parabramis pekinensis) and silver carp (Hypophthalmichthys molitrix) culture ponds using the SMWM resulted in decreased NH3(+)-N and available phosphorus concentrations and increased TP concentrations. The TN content and the amount of available phosphorus in the sediment were reduced. In addition, the fish production showed that the SMWM enhanced the yields of Wuchang bream and silver carp by more than 30% and 24%, respectively. These results

Land-based salmon aquacultures change the quality and bacterial degradation of riverine dissolved organic matter

Science.gov (United States)

Kamjunke, Norbert; Nimptsch, Jorge; Harir, Mourad; Herzsprung, Peter; Schmitt-Kopplin, Philippe; Neu, Thomas R.; Graeber, Daniel; Osorio, Sebastian; Valenzuela, Jose; Carlos Reyes, Juan; Woelfl, Stefan; Hertkorn, Norbert

2017-03-01

Aquacultures are of great economic importance worldwide but pollute pristine headwater streams, lakes, and estuaries. However, there are no in-depth studies of the consequences of aquacultures on dissolved organic matter (DOM) composition and structure. We performed a detailed molecular level characterization of aquaculture DOM quality and its bacterial degradation using four salmon aquacultures in Chile. Fluorescence measurements, ultrahigh-resolution mass spectrometry, and nuclear magnetic resonance spectroscopy of the DOM revealed specific and extensive molecular alterations caused by aquacultures. Aquacultures released large quantities of readily bioavailable metabolites (primarily carbohydrates and peptides/proteins, and lipids), causing the organic matter downstream of all the investigated aquacultures to deviate strongly from the highly processed, polydisperse and molecularly heterogeneous DOM found in pristine rivers. However, the upstream individual catchment DOM signatures remained distinguishable at the downstream sites. The benthic algal biovolume decreased and the bacterial biovolume and production increased downstream of the aquacultures, shifting stream ecosystems to a more heterotrophic state and thus impairing the ecosystem health. The bacterial DOM degradation rates explain the attenuation of aquaculture DOM within the subsequent stream reaches. This knowledge may aid the development of improved waste processing facilities and may help to define emission thresholds to protect sensitive stream ecosystems.

Characterising organic matter in recirculating aquaculture systems with fluorescence EEM spectroscopy

DEFF Research Database (Denmark)

Hambly, Adam; Arvin, Erik; Pedersen, Lars-Flemming

2015-01-01

The potential of recirculating aquaculture systems (RAS) in the aquaculture industry is increasingly being acknowledged. Along with intensified application, the need to better characterise and understand the accumulated dissolved organic matter (DOM) within these systems increases. Mature RASs...

[Overview of patents on targeted genome editing technologies and their implications for innovation and entrepreneurship education in universities].

Science.gov (United States)

Fan, Xiang-yu; Lin, Yan-ping; Liao, Guo-jian; Xie, Jian-ping

2015-12-01

Zinc finger nuclease, transcription activator-like effector nuclease, and clustered regularly interspaced short palindromic repeats/Cas9 nuclease are important targeted genome editing technologies. They have great significance in scientific research and applications on aspects of functional genomics research, species improvement, disease prevention and gene therapy. There are past or ongoing disputes over ownership of the intellectual property behind every technology. In this review, we summarize the patents on these three targeted genome editing technologies in order to provide some reference for developing genome editing technologies with self-owned intellectual property rights and some implications for current innovation and entrepreneurship education in universities.

Aquaculture disturbance impacts the diet but not ecological linkages of a ubiquitous predatory fish

Science.gov (United States)

McPeek, Kathleen C.; McDonald, P. Sean; VanBlaricom, Glenn

2015-01-01

Aquaculture operations are a frequent and prominent cause of anthropogenic disturbance to marine and estuarine communities and may alter species composition and abundance. However, little is known about how such disturbances affect trophic linkages or ecosystem functions. In Puget Sound, Washington, aquaculture of the Pacific geoduck clam (Panopea generosa) is increasing and involves placing nets and polyvinyl chloride (PVC) tubes in intertidal areas to protect juvenile geoducks from predators. Initial studies of the structured phase of the farming cycle have documented limited impacts on the abundance of some species. To examine the effect of geoduck aquaculture on ecological linkages, the trophic relationships of a local ubiquitous consumer, Pacific staghorn sculpin (Leptocottus armatus), to its invertebrate prey were compared between geoduck aquaculture sites and nearby reference areas with no aquaculture. Mark-recapture data indicated that sculpin exhibit local site fidelity to cultured and reference areas. The stomach contents of sculpin and stable isotope signatures of sculpin and their prey were examined to study the trophic ecology of cultured and reference areas. Results showed that the structured phase of geoduck aquaculture initiated some changes to staghorn sculpin ecology, as reflected in sculpin diet through stomach content analysis. However, carbon and nitrogen stable isotopes revealed that the general food web function of sculpin remained unchanged. The source of carbon at the base of the food web and the trophic position of sculpin were not impacted by geoduck aquaculture. The study has important implications for geoduck aquaculture management and will inform regulatory decisions related to shellfish aquaculture policy.

Microbial populations causing off-flavour in recirculated aquaculture systems

DEFF Research Database (Denmark)

Lukassen, Mie Bech; Schramm, Edward; Nielsen, Jeppe Lund

the distribution of geoA in more than 50 European and Brazilian aquaculture systems has allowed us to identify the diversity among geosmin-producing bacteria. The different populations of geosmin-producers were evaluated relative to plant design, environmental and operational parameters in full-scale aquaculture...... systems using multivariate statistics. The influencing parameters identified were subsequently validated by testing their gene expressions in well-controlled pilot scale aquaculture systems. The results show that the geoA gene is a relative well-conserved gene with limited horizontal gene transfer events...... phase. Furthermore, the gene expressions of the individual groups show positive correlations to the organic loading and presence of oxygen. The current study reveals the presence of important populations involved in geosmin production and which parameters are of importance for their presence...

Development of a seaweed species-selection index for successful culture in a seaweed-based integrated aquaculture system

Science.gov (United States)

Kang, Yun Hee; Hwang, Jae Ran; Chung, Ik Kyo; Park, Sang Rul

2013-03-01

Integrated multi-trophic aquaculture (IMTA) has been proposed as a concept that combines the cultivation of fed aquaculture species ( e.g., finfish/shrimp) with extractive aquaculture species ( e.g., shellfish/seaweed). In seaweed-based integrated aquaculture, seaweeds have the capacity to reduce the environmental impact of nitrogen-rich effluents on coastal ecosystems. Thus, selection of optimal species for such aquaculture is of great importance. The present study aimed to develop a seaweed species-selection index for selecting suitable species in seaweed-based integrated aquaculture system. The index was synthesized using available literature-based information, reference data, and physiological seaweed experiments to identify and prioritize the desired species. Undaria pinnatifida, Porphyra yezoensis and Ulva compressa scored the highest according to a seaweed-based integrated aquaculture suitability index (SASI). Seaweed species with the highest scores were adjudged to fit the integrated aquaculture systems. Despite the application of this model limited by local aquaculture environment, it is considered to be a useful tool for selecting seaweed species in IMTA.

Steroids accumulate in the rearing water of commercial recirculating aquaculture systems

NARCIS (Netherlands)

Mota, V.C.; Martins, C.I.; Eding, E.H.; Canário, A.V.M.; Verreth, J.A.J.

2014-01-01

Little information is available on steroid concentrations in the rearing water of aquaculture systems and whether they accumulate in recirculating aquaculture systems (RAS). Therefore this study aimed at determining (1) the concentrations and variation of cortisol and sex steroids in RAS, (2) the

Chemical Genomics and Emerging DNA Technologies in the Identification of Drug Mechanisms and Drug Targets

DEFF Research Database (Denmark)

Olsen, Louise Cathrine Braun; Færgeman, Nils J.

2012-01-01

and validate therapeutic targets and to discover drug candidates for rapidly and effectively generating new interventions for human diseases. The recent emergence of genomic technologies and their application on genetically tractable model organisms like Drosophila melanogaster,Caenorhabditis elegans...... critical roles in the genomic age of biological research and drug discovery. In the present review we discuss how simple biological model organisms can be used as screening platforms in combination with emerging genomic technologies to advance the identification of potential drugs and their molecular...

Perception of Aquaculture Education to Support Further Growth of Aquaculture Industry in Victoria, Australia

Science.gov (United States)

Awal, Sadiqul; Christie, Andrew; Watson, Matthew; Hannadige, Asanka G. T.

2012-01-01

Purpose: The central aim of this study was to determine the perception of aquaculture educational provisions in the state of Victoria, and whether they are sufficient to ultimately support further growth of the industry. Design/methodology/approach: Questionnaires were formulated and distributed to participants in a variety of ways, including via…

MicroRNA repertoire for functional genome research in tilapia identified by deep sequencing.

Science.gov (United States)

Yan, Biao; Wang, Zhen-Hua; Zhu, Chang-Dong; Guo, Jin-Tao; Zhao, Jin-Liang

2014-08-01

The Nile tilapia (Oreochromis niloticus; Cichlidae) is an economically important species in aquaculture and occupies a prominent position in the aquaculture industry. MicroRNAs (miRNAs) are a class of noncoding RNAs that post-transcriptionally regulate gene expression involved in diverse biological and metabolic processes. To increase the repertoire of miRNAs characterized in tilapia, we used the Illumina/Solexa sequencing technology to sequence a small RNA library using pooled RNA sample isolated from the different developmental stages of tilapia. Bioinformatic analyses suggest that 197 conserved and 27 novel miRNAs are expressed in tilapia. Sequence alignments indicate that all tested miRNAs and miRNAs* are highly conserved across many species. In addition, we characterized the tissue expression patterns of five miRNAs using real-time quantitative PCR. We found that miR-1/206, miR-7/9, and miR-122 is abundantly expressed in muscle, brain, and liver, respectively, implying a potential role in the regulation of tissue differentiation or the maintenance of tissue identity. Overall, our results expand the number of tilapia miRNAs, and the discovery of miRNAs in tilapia genome contributes to a better understanding the role of miRNAs in regulating diverse biological processes.

Cobia (Rachycentron canadum hatchery-to-market aquaculture technology: recent advances at the University of Miami Experimental Hatchery (UMEH Tecnologia da criação de beijupirá (Rachycentron canadum: recentes avanços do Laboratório de Larvicultura Experimental da Universidade de MIAMI (UMEH

Directory of Open Access Journals (Sweden)

Daniel Benetti

2010-07-01

Full Text Available Among warm-water marine fishes, cobia is one of the best aquaculture candidate species in the world. Currently there are commercial culture operations in several Asian countries and the industry has started developing elsewhere, including the Western Central Atlantic region. Significant research has been conducted at the University of Miami's Aquaculture Program / University of Miami Experimental Hatchery (UMEH during the last eight years, involving research to develop and optimize advanced technology to demonstrate the viability of raising hatchery-reared cobia in collaboration with the private sector. This paper reviews some of this recent advances for the development of Hatchery-to-Market Aquaculture Technology for commercial production of cobia.Dentre os peixes marinhos de águas quentes, o bijupirá é um dos grandes candidatos para a aquacultura no mundo. Atualmente, existem operações comerciais em vários países Asiáticos e a indústria iniciou suas operações em outros locais, incluindo a região do Atlântico Central. Pesquisas têm sido realizadas no "University of Miami's Aquaculture Program / University of Miami Experimental Hatchery (UMEH" durante os últimos oito anos envolvendo o desenvolvimento e otimização de tecnologia avançada para demonstrar a viabilidade da criação de bijupirá com colaboração com o setor privado. Este artigo revisa alguns destes avanços recentes para o desenvolvimento da tecnologia da larvicultura para o mercado para a produção comercial de bijupirá.

Success Stories in Asian Aquaculture

International Development Research Centre (IDRC) Digital Library (Canada)

In Asia, the epicenter of aquaculture production, the traditional practices tend to be ...... In addition to supporting the development of the International Principles for ...... Government also provided income tax exemption schemes to small scale ...... Forum held in 30th November 2004 in Hotel Equatorial, Penang, Malaysia, 12.

Genome sequence and genetic diversity of the common carp, Cyprinus carpio.

Science.gov (United States)

Xu, Peng; Zhang, Xiaofeng; Wang, Xumin; Li, Jiongtang; Liu, Guiming; Kuang, Youyi; Xu, Jian; Zheng, Xianhu; Ren, Lufeng; Wang, Guoliang; Zhang, Yan; Huo, Linhe; Zhao, Zixia; Cao, Dingchen; Lu, Cuiyun; Li, Chao; Zhou, Yi; Liu, Zhanjiang; Fan, Zhonghua; Shan, Guangle; Li, Xingang; Wu, Shuangxiu; Song, Lipu; Hou, Guangyuan; Jiang, Yanliang; Jeney, Zsigmond; Yu, Dan; Wang, Li; Shao, Changjun; Song, Lai; Sun, Jing; Ji, Peifeng; Wang, Jian; Li, Qiang; Xu, Liming; Sun, Fanyue; Feng, Jianxin; Wang, Chenghui; Wang, Shaolin; Wang, Baosen; Li, Yan; Zhu, Yaping; Xue, Wei; Zhao, Lan; Wang, Jintu; Gu, Ying; Lv, Weihua; Wu, Kejing; Xiao, Jingfa; Wu, Jiayan; Zhang, Zhang; Yu, Jun; Sun, Xiaowen

2014-11-01

The common carp, Cyprinus carpio, is one of the most important cyprinid species and globally accounts for 10% of freshwater aquaculture production. Here we present a draft genome of domesticated C. carpio (strain Songpu), whose current assembly contains 52,610 protein-coding genes and approximately 92.3% coverage of its paleotetraploidized genome (2n = 100). The latest round of whole-genome duplication has been estimated to have occurred approximately 8.2 million years ago. Genome resequencing of 33 representative individuals from worldwide populations demonstrates a single origin for C. carpio in 2 subspecies (C. carpio Haematopterus and C. carpio carpio). Integrative genomic and transcriptomic analyses were used to identify loci potentially associated with traits including scaling patterns and skin color. In combination with the high-resolution genetic map, the draft genome paves the way for better molecular studies and improved genome-assisted breeding of C. carpio and other closely related species.

Potential use of power plant reject heat in commercial aquaculture

Energy Technology Data Exchange (ETDEWEB)

Olszewski, M.

1977-01-01

Current research and commercial activities in aquaculture operations have been reviewed. An aquaculture system using mostly herbivorous species in pond culture is proposed as a means of using waste heat to produce reasonably priced protein. The system uses waste water streams, such as secondary sewage effluent, animal wastes, or some industrial waste streams as a primary nutrient source to grow algae, which is fed to fish and clams. Crayfish feed on the clam wastes thereby providing a clean effluent from the aquaculture system. Alternate fish associations are presented and it appears that a carp or tilapia association is desirable. An aquaculture system capable of rejecting all the waste heat from a 1000-MW(e) power station in winter can accommodate about half the summer heat rejection load. The aquaculture facility would require approximately 133 ha and would produce 4.1 x 10/sup 5/ kg/year of fish, 1.5 x 10/sup 6/ kg/year of clam meat, and 1.5 x 10/sup 4/ kg/year of live crayfish. The estimated annual pretax profit from this operation is one million dollars. Several possible problem areas have been identified. However, technical solutions appear to be readily available to solve these problems. The proposed system shows considerable economic promise. Small scale experiments have demonstrated the technical feasibility of various components of the system. It therefore appears that a pilot scale experimental facility should be operated.

Potential use of power plant reject heat in commercial aquaculture

International Nuclear Information System (INIS)

Olszewski, M.

1977-01-01

Current research and commercial activities in aquaculture operations have been reviewed. An aquaculture system using mostly herbivorous species in pond culture is proposed as a means of using waste heat to produce reasonably priced protein. The system uses waste water streams, such as secondary sewage effluent, animal wastes, or some industrial waste streams as a primary nutrient source to grow algae, which is fed to fish and clams. Crayfish feed on the clam wastes thereby providing a clean effluent from the aquaculture system. Alternate fish associations are presented and it appears that a carp or tilapia association is desirable. An aquaculture system capable of rejecting all the waste heat from a 1000-MW(e) power station in winter can accommodate about half the summer heat rejection load. The aquaculture facility would require approximately 133 ha and would produce 4.1 x 10 5 kg/year of fish, 1.5 x 10 6 kg/year of clam meat, and 1.5 x 10 4 kg/year of live crayfish. The estimated annual pretax profit from this operation is one million dollars. Several possible problem areas have been identified. However, technical solutions appear to be readily available to solve these problems. The proposed system shows considerable economic promise. Small scale experiments have demonstrated the technical feasibility of various components of the system. It therefore appears that a pilot scale experimental facility should be operated

Land-based salmon aquacultures change the quality and bacterial degradation of riverine dissolved organic matter

DEFF Research Database (Denmark)

Kamjunke, Norbert; Nimptsch, Jorge; Harir, Mourad

2017-01-01

characterization of aquaculture DOM quality and its bacterial degradation using four salmon aquacultures in Chile. Fluorescence measurements, ultrahigh-resolution mass spectrometry, and nuclear magnetic resonance spectroscopy of the DOM revealed specific and extensive molecular alterations caused by aquacultures...

From aquaculture goals to real social and ecological impacts: carp introduction in rural Central Mexico.

Science.gov (United States)

Tapia, Mónica; Zambrano, Luis

2003-06-01

Aquaculture has been seen as a solution to food/protein availability in rural populations of poor countries. It is mainly based on exotic species, that produce changes in host system dynamics once introduced. Aquaculture not only changes the ecology of freshwater systems, but can also lead to modification of social relations. Until now, aquaculture programs have not been adequately analyzed no questioned enough. We evaluate both ecological effects and local social benefits of common carp aquaculture programs in shallow ponds of rural areas, using a municipality in Central Mexico as a case study. Using an "environmental entitlements" approach, our findings suggest that: i) carp aquaculture increases water turbidity and depletes native species reducing the poor people's access to them; ii) aquaculture mainly benefits pond owners rather than poor peasants. This mainly results from changes in fishing rights. We conclude that aquaculture policy goals and assumptions of benefits should be reviewed, if the negative ecological effects are to be decreased and conditions for people in rural areas are to be improved.

Evaluation and validation of a multi-residue method based on biochip technology for the simultaneous screening of six families of antibiotics in muscle and aquaculture products.

Science.gov (United States)

Gaudin, Valérie; Hedou, Celine; Soumet, Christophe; Verdon, Eric

2016-01-01

The Evidence Investigator™ system (Randox, UK) is a biochip and semi-automated system. The microarray kit II (AM II) is capable of detecting several compounds belonging to different families of antibiotics: quinolones, ceftiofur, thiamphenicol, streptomycin, tylosin and tetracyclines. The performance of this innovative system was evaluated for the detection of antibiotic residues in new matrices, in muscle of different animal species and in aquaculture products. The method was validated according to the European Decision No. EC/2002/657 and the European guideline for the validation of screening methods, which represents a complete initial validation. The false-positive rate was equal to 0% in muscle and in aquaculture products. The detection capabilities CCβ for 12 validated antibiotics (enrofloxacin, difloxacin, ceftiofur, desfuroyl ceftiofur cysteine disulfide, thiamphenicol, florfenicol, tylosin, tilmicosin, streptomycin, dihydrostreptomycin, tetracycline, doxycycline) were all lower than the respective maximum residue limits (MRLs) in muscle from different animal origins (bovine, ovine, porcine, poultry). No cross-reactions were observed with other antibiotics, neither with the six detected families nor with other families of antibiotics. The AM II kit could be applied to aquaculture products but with higher detection capabilities from those in muscle. The detection capabilities CCβ in aquaculture products were respectively at 0.25, 0.10 and 0.5 of the respective MRL in aquaculture products for enrofloxacin, tylosin and oxytetracycline. The performance of the AM II kit has been compared with other screening methods and with the performance characteristics previously determined in honey.

Survival and growth of fish (Lates calcarifer under integrated mangrove-aquaculture and open-aquaculture systems

Directory of Open Access Journals (Sweden)

Shanmugaarasu Venkatachalam

2018-02-01

Full Text Available The potential use of mangrove swamp for fish farming industry is not clearly known. Therefore, current study was conducted to assess the growth performance of the Asian Seabass, Lates calcarifer cultivated in integrated mangrove-aquaculture system (IMAS and open aquaculture system without mangroves (OAS. Fish survival and biomass production were higher by 11% and 12.5% respectively in the IMAS than those in the OAS. The fish growth performance was higher in monsoon than that in other seasons. It was in association with water quality parameters such as, high levels of DO, chlorophylls-a,b, nitrate-N, DOC, TOC; low levels of light intensity, temperature (air, water, SPM, chlorophyll-c, nitrite-N, ammonia, total phosphate, reactive silicate, and POC; as well with moderate salinity. The water quality seemed to be favourable for growth and survival of the fish. Therefore, integrating the mangroves with fish farming of the Asian seabass is beneficial for better fish survival and biomass production.

Implications of Extracellular Polymeric Substance Matrices of Microbial Habitats Associated with Coastal Aquaculture Systems

Directory of Open Access Journals (Sweden)

Juan Carlos Camacho-Chab

2016-08-01

Full Text Available Coastal zones support fisheries that provide food for humans and feed for animals. The decline of fisheries worldwide has fostered the development of aquaculture. Recent research has shown that extracellular polymeric substances (EPS synthesized by microorganisms contribute to sustainable aquaculture production, providing feed to the cultured species, removing waste and contributing to the hygiene of closed systems. As ubiquitous components of coastal microbial habitats at the air–seawater and seawater–sediment interfaces as well as of biofilms and microbial aggregates, EPS mediate deleterious processes that affect the performance and productivity of aquaculture facilities, including biofouling of marine cages, bioaccumulation and transport of pollutants. These biomolecules may also contribute to the persistence of harmful algal blooms (HABs and their impact on cultured species. EPS may also exert a positive influence on aquaculture activity by enhancing the settling of aquaculturally valuable larvae and treating wastes in bioflocculation processes. EPS display properties that may have biotechnological applications in the aquaculture industry as antiviral agents and immunostimulants and as a novel source of antifouling bioproducts.

Probabilistic risk assessment of veterinary medicines applied to four major aquaculture species produced in ASIA

NARCIS (Netherlands)

Rico, A.; Brink, van den P.J.

2014-01-01

Aquaculture production constitutes one of the main sources of pollution with veterinary medicines into the environment. About 90% of the global aquaculture production is produced in Asia and the potential environmental risks associated with the use of veterinary medicines in Asian aquaculture have

A review on the potential of aquaculture development in Kenya for ...

African Journals Online (AJOL)

A review on the potential of aquaculture development in Kenya for poverty alleviation and food security. ... It is estimated that another 40 million metric tonnes of aquatic food will be required by the year 2030. Today ... Key words: Fish production, capture fisheries, culture systems, Economic Stimulus Programme, aquaculture ...

Large-scale climatic effects on traditional Hawaiian fishpond aquaculture.

Directory of Open Access Journals (Sweden)

Daniel McCoy

Full Text Available Aquaculture accounts for almost one-half of global fish consumption. Understanding the regional impact of climate fluctuations on aquaculture production thus is critical for the sustainability of this crucial food resource. The objective of this work was to understand the role of climate fluctuations and climate change in subtropical coastal estuarine environments within the context of aquaculture practices in He'eia Fishpond, O'ahu Island, Hawai'i. To the best of our knowledge, this was the first study of climate effects on traditional aquaculture systems in the Hawaiian Islands. Data from adjacent weather stations were analyzed together with in situ water quality instrument deployments spanning a 12-year period (November 2004 -November 2016. We found correlations between two periods with extremely high fish mortality at He'eia Fishpond (May and October 2009 and slackening trade winds in the week preceding each mortality event, as well as surface water temperatures elevated 2-3°C higher than the background periods (March-December 2009. We posit that the lack of trade wind-driven surface water mixing enhanced surface heating and stratification of the water column, leading to hypoxic conditions and stress on fish populations, which had limited ability to move within net pen enclosures. Elevated water temperature and interruption of trade winds previously have been linked to the onset of El Niño in Hawai'i. Our results provide empirical evidence regarding El Niño effects on the coastal ocean, which can inform resource management efforts about potential impact of climate variation on aquaculture production. Finally, we provide recommendations for reducing the impact of warming events on fishponds, as these events are predicted to increase in magnitude and frequency as a consequence of global warming.

Economic impact studies on development project of New Yogyakarta International Airport to aquaculture in Kulonprogo Coastal

Science.gov (United States)

Rachman, F.; Satriagasa, M. C.; Riasasi, W.

2018-03-01

New Yogyakarta International Airport (NYIA) is being constructed in Temon Sub District, Kulonprogo District. It lies on 587.2 ha area in the southern part of Java Island coastal area. Many areas of Kulonprogro coastal area are used for aquaculture of vanname shrimp. In that case, the aquaculture land needs to be cleared for the airport construction necessity and requires compensation. The value of the compensation needs to be right calculated by both sides, regarding the aquaculture land are local community assets. This study uses spatial analysis and visual interpretation. Whereas, the calculation of the acquisition value and income capital value uses Discounted Cash Flow (DCF) method. The result shows the area of aquaculture land which impacted to be cleared is 83 ha, means decreasing of shrimp ponds area in Temon Sub District, Kulonprogo District. The calculation of acquisition value for airport development indicates higher value than the income from the aquaculture activity. The results mean the aquaculture landlords do not incur losses due to the airport development project. These findings can be used for local government and related stakeholders to formulate a policy of aquaculture relocation and to estimate projection for aquaculture land suitability in Yogyakarta coastal area.

REVIEW OF AQUACULTURAL PRODUCTION SYSTEM MODELS

African Journals Online (AJOL)

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models of aquacultural production systems with the aim of adopting a suitable one for ... of predicting the environmental condition, so as to determine point of diminishing returns and optimize yield in an ..... sale of fish are also tracked.

Ocean modelling for aquaculture and fisheries in Irish waters

Science.gov (United States)

Dabrowski, T.; Lyons, K.; Cusack, C.; Casal, G.; Berry, A.; Nolan, G. D.

2016-01-01

The Marine Institute, Ireland, runs a suite of operational regional and coastal ocean models. Recent developments include several tailored products that focus on the key needs of the Irish aquaculture sector. In this article, an overview of the products and services derived from the models are presented. The authors give an overview of a shellfish model developed in-house and that was designed to predict the growth, the physiological interactions with the ecosystem, and the level of coliform contamination of the blue mussel. As such, this model is applicable in studies on the carrying capacity of embayments, assessment of the impacts of pollution on aquaculture grounds, and the determination of shellfish water classes. Further services include the assimilation of the model-predicted shelf water movement into a new harmful algal bloom alert system used to inform end users of potential toxic shellfish events and high biomass blooms that include fish-killing species. Models are also used to identify potential sites for offshore aquaculture, to inform studies of potential cross-contamination in farms from the dispersal of planktonic sea lice larvae and other pathogens that can infect finfish, and to provide modelled products that underpin the assessment and advisory services on the sustainable exploitation of the resources of marine fisheries. This paper demonstrates that ocean models can provide an invaluable contribution to the sustainable blue growth of aquaculture and fisheries.

The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing

Directory of Open Access Journals (Sweden)

Volckaert Filip AM

2010-01-01

Full Text Available Abstract Background Food supply from the ocean is constrained by the shortage of domesticated and selected fish. Development of genomic models of economically important fishes should assist with the removal of this bottleneck. European sea bass Dicentrarchus labrax L. (Moronidae, Perciformes, Teleostei is one of the most important fishes in European marine aquaculture; growing genomic resources put it on its way to serve as an economic model. Results End sequencing of a sea bass genomic BAC-library enabled the comparative mapping of the sea bass genome using the three-spined stickleback Gasterosteus aculeatus genome as a reference. BAC-end sequences (102,690 were aligned to the stickleback genome. The number of mappable BACs was improved using a two-fold coverage WGS dataset of sea bass resulting in a comparative BAC-map covering 87% of stickleback chromosomes with 588 BAC-contigs. The minimum size of 83 contigs covering 50% of the reference was 1.2 Mbp; the largest BAC-contig comprised 8.86 Mbp. More than 22,000 BAC-clones aligned with both ends to the reference genome. Intra-chromosomal rearrangements between sea bass and stickleback were identified. Size distributions of mapped BACs were used to calculate that the genome of sea bass may be only 1.3 fold larger than the 460 Mbp stickleback genome. Conclusions The BAC map is used for sequencing single BACs or BAC-pools covering defined genomic entities by second generation sequencing technologies. Together with the WGS dataset it initiates a sea bass genome sequencing project. This will allow the quantification of polymorphisms through resequencing, which is important for selecting highly performing domesticated fish.

ZONING OF COASTAL AREA FOR MARINE AQUACULTURE Š PRESENT SITUATIONS AND PROBLEMS

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Lav Bavčević

2001-12-01

Full Text Available We already acepted that Croatian economical and geopolitical possition can bee improved only with better utilization of coastal area. Under these conditions mariculture also makes a part od sea master plan because demands for mariculture are focused on clean environmental conditions to obtain economic benefits. Increased pressure to the coastal area is global trend and if not planed and organized can provoke conflicts and can affect further development. Under these condition, marine aquaculture is frequent subject of many discussion focused on the environmental impact. Conflict of different interest in coastal area with no argumentation is putting marine aquaculture in worst position related with tourism and industry. Hard argumentations is laying in noneadequate frame of work in some facilities and to take advantake competitors are preasenting marine aquaculture in worst picture. Marine aquaculture product has to be health product, which can be completely damaged because of non-responsible approach of other activity. Mariculture also can suffer from self-pollution as for example tourism and must be well planed and managed. Fecal pollution from towns, pollution from bad controlled tourists activity, industry, influence of intensive and non controlled agriculture in coast line, are also potential danger for quality of all sea products and also cultured products from marine aquaculture. High quality of marine products can be obtained by zoning of coastal area, and in concept of these zoning it is necessary to define the zones for marine aquaculture. Procedure of zoning has to be divided in three steps: deetrmination of present status of area, definition of shore land for making mariculture related shore infrastructure and definitions of areas suitable for mariculture with limits of production. These can make positive situations with avoiding conflicts in exploitation of common resources in future. Zone for marine aquaculture has to be controlled

“AquaTrace” The development of tools for tracing and evaluating the genetic impact of fish from aquaculture

DEFF Research Database (Denmark)

Eg Nielsen, Einar; Bekkevold, Dorte; Svåsand, Terje

2012-01-01

Aquaculture represents a key solution to meet the escalating demand for fish. Accordingly, development of appropriate legislation within the European Union aquaculture sector underpinned by cutting‐edge research and technology is required. This necessitates implementation of breeding programmes...... to identify of the genetic origin of both wild and farmed fish (assignment and genetic traceability), as well as for the detection of interbreeding genetic introgression between farmed and wild stocks. This work will be carried out on three marine fish of economic significance: the European sea bass...... (Dicentrarchus labrax), gilthead sea bream (Sparus aurata), and turbot (Scophthalmus maximus). To address quantitative effects of farm introgression, the rationale is to examine links between key fitness and life‐history traits and specific functional genetic variation between wild and farmed fish, using...

The potential for eEngineering enhanced functional-feed soybeans for sustainable aquaculture feed

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Eliot eHerman

2016-04-01

Full Text Available Aquaculture is the most rapidly growing segment of global animal production that now surpasses wild-capture fisheries production and is continuing to grow 10% annually. Sustainable aquaculture needs to diminish, and progressively eliminate, its dependence on fishmeal-sourced feed from over-harvestedallocated fisheries. Sustainable aquafeed sources will need to be primarily of plant-origin. Soybean is currently the primary global vegetable-origin protein source for aquaculture. Direct exchange of soybean meal for fishmeal in aquafeed has resulted in reduced growth rates due in part to soybean’s anti-nutritional proteins. To produce an aquaculture soybeans for use in aquaculture feeds a new conventional line has been bred termed Triple Null by stacking null alleles for the feed-relevant proteins Kunitz Trypsin Inhibitor, lectin, and P34 allergen. Triple Null is now being further enhanced as a platform to build additional transgene traits for production disease vaccines, altered protein composition, and to produce high levels of -carotene an intrinsic orange-colored aquafeed marker to distinguish the seeds from commodity beans and as the metabolic feedstock precursor of highly valued astaxanthin.

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation.

Science.gov (United States)

Mavromatis, Konstantinos; Land, Miriam L; Brettin, Thomas S; Quest, Daniel J; Copeland, Alex; Clum, Alicia; Goodwin, Lynne; Woyke, Tanja; Lapidus, Alla; Klenk, Hans Peter; Cottingham, Robert W; Kyrpides, Nikos C

2012-01-01

The emergence of next generation sequencing (NGS) has provided the means for rapid and high throughput sequencing and data generation at low cost, while concomitantly creating a new set of challenges. The number of available assembled microbial genomes continues to grow rapidly and their quality reflects the quality of the sequencing technology used, but also of the analysis software employed for assembly and annotation. In this work, we have explored the quality of the microbial draft genomes across various sequencing technologies. We have compared the draft and finished assemblies of 133 microbial genomes sequenced at the Department of Energy-Joint Genome Institute and finished at the Los Alamos National Laboratory using a variety of combinations of sequencing technologies, reflecting the transition of the institute from Sanger-based sequencing platforms to NGS platforms. The quality of the public assemblies and of the associated gene annotations was evaluated using various metrics. Results obtained with the different sequencing technologies, as well as their effects on downstream processes, were analyzed. Our results demonstrate that the Illumina HiSeq 2000 sequencing system, the primary sequencing technology currently used for de novo genome sequencing and assembly at JGI, has various advantages in terms of total sequence throughput and cost, but it also introduces challenges for the downstream analyses. In all cases assembly results although on average are of high quality, need to be viewed critically and consider sources of errors in them prior to analysis. These data follow the evolution of microbial sequencing and downstream processing at the JGI from draft genome sequences with large gaps corresponding to missing genes of significant biological role to assemblies with multiple small gaps (Illumina) and finally to assemblies that generate almost complete genomes (Illumina+PacBio).

Public health and valorization of genome-based technologies: a new model.

Science.gov (United States)

Lal, Jonathan A; Schulte In den Bäumen, Tobias; Morré, Servaas A; Brand, Angela

2011-12-05

The success rate of timely translation of genome-based technologies to commercially feasible products/services with applicability in health care systems is significantly low. We identified both industry and scientists neglect health policy aspects when commercializing their technology, more specifically, Public Health Assessment Tools (PHAT) and early on involvement of decision makers through which market authorization and reimbursements are dependent. While Technology Transfer (TT) aims to facilitate translation of ideas into products, Health Technology Assessment, one component of PHAT, for example, facilitates translation of products/processes into healthcare services and eventually comes up with recommendations for decision makers. We aim to propose a new model of valorization to optimize integration of genome-based technologies into the healthcare system. The method used to develop our model is an adapted version of the Fish Trap Model and the Basic Design Cycle. We found although different, similarities exist between TT and PHAT. Realizing the potential of being mutually beneficial justified our proposal of their relative parallel initiation. We observed that the Public Health Genomics Wheel should be included in this relative parallel activity to ensure all societal/policy aspects are dealt with preemptively by both stakeholders. On further analysis, we found out this whole process is dependent on the Value of Information. As a result, we present our LAL (Learning Adapting Leveling) model which proposes, based on market demand; TT and PHAT by consultation/bi-lateral communication should advocate for relevant technologies. This can be achieved by public-private partnerships (PPPs). These widely defined PPPs create the innovation network which is a developing, consultative/collaborative-networking platform between TT and PHAT. This network has iterations and requires learning, assimilating and using knowledge developed and is called absorption capacity. We

Advantages of genome sequencing by long-read sequencer using SMRT technology in medical area.

Science.gov (United States)

Nakano, Kazuma; Shiroma, Akino; Shimoji, Makiko; Tamotsu, Hinako; Ashimine, Noriko; Ohki, Shun; Shinzato, Misuzu; Minami, Maiko; Nakanishi, Tetsuhiro; Teruya, Kuniko; Satou, Kazuhito; Hirano, Takashi

2017-07-01

PacBio RS II is the first commercialized third-generation DNA sequencer able to sequence a single molecule DNA in real-time without amplification. PacBio RS II's sequencing technology is novel and unique, enabling the direct observation of DNA synthesis by DNA polymerase. PacBio RS II confers four major advantages compared to other sequencing technologies: long read lengths, high consensus accuracy, a low degree of bias, and simultaneous capability of epigenetic characterization. These advantages surmount the obstacle of sequencing genomic regions such as high/low G+C, tandem repeat, and interspersed repeat regions. Moreover, PacBio RS II is ideal for whole genome sequencing, targeted sequencing, complex population analysis, RNA sequencing, and epigenetics characterization. With PacBio RS II, we have sequenced and analyzed the genomes of many species, from viruses to humans. Herein, we summarize and review some of our key genome sequencing projects, including full-length viral sequencing, complete bacterial genome and almost-complete plant genome assemblies, and long amplicon sequencing of a disease-associated gene region. We believe that PacBio RS II is not only an effective tool for use in the basic biological sciences but also in the medical/clinical setting.

Aquaculture en milieu rural au Sri Lanka | CRDI - Centre de ...

International Development Research Centre (IDRC) Digital Library (Canada)

Le Sri Lanka se tourne vers l'aquaculture pour diversifier son économie rurale et accroître sa production alimentaire, particulièrement dans les provinces du nord et de l'est du pays, qui se relèvent du conflit civil. Bien que l'aquaculture représente une stratégie de sécurité alimentaire prometteuse, elle doit être gérée de ...

Consumer preferences for sustainable aquaculture products: Evidence from in-depth interviews, think aloud protocols and choice experiments.

Science.gov (United States)

Risius, Antje; Janssen, Meike; Hamm, Ulrich

2017-06-01

Fish from aquaculture is becoming more important for human consumption. Sustainable aquaculture procedures were developed as an alternative to overcome the negative environmental impacts of conventional aquaculture procedures and wild fisheries. The objective of this contribution is to determine what consumers expect from sustainable aquaculture and whether they prefer sustainable aquaculture products. A combination of qualitative research methods, with think aloud protocols and in-depth interviews, as well as quantitative methods, using choice experiments and face-to-face interviews, was applied. Data was collected in three different cities of Germany. Results revealed that sustainable aquaculture was associated with natural, traditional, local, and small scale production systems with high animal welfare standards. Overall, participants paid a lot of attention to the declaration of origin; in particular fish products from Germany and Denmark were preferred along with local products. Frequently used sustainability claims for aquaculture products were mostly criticized as being imprecise by the participants of the qualitative study; even though two claims tested in the choice experiments had a significant positive impact on the choice of purchase. Similarly, existing aquaculture-specific labels for certified sustainable aquaculture had an impact on the buying decision, but were not well recognized and even less trusted. Overall, consumers had a positive attitude towards sustainable aquaculture. However, communication measures and labelling schemes should be improved to increase consumer acceptance and make a decisive impact on consumers' buying behavior. Copyright © 2017 Elsevier Ltd. All rights reserved.

Application of Genomic Technologies to the Breeding of Trees.

Science.gov (United States)

Badenes, Maria L; Fernández I Martí, Angel; Ríos, Gabino; Rubio-Cabetas, María J

2016-01-01

The recent introduction of next generation sequencing (NGS) technologies represents a major revolution in providing new tools for identifying the genes and/or genomic intervals controlling important traits for selection in breeding programs. In perennial fruit trees with long generation times and large sizes of adult plants, the impact of these techniques is even more important. High-throughput DNA sequencing technologies have provided complete annotated sequences in many important tree species. Most of the high-throughput genotyping platforms described are being used for studies of genetic diversity and population structure. Dissection of complex traits became possible through the availability of genome sequences along with phenotypic variation data, which allow to elucidate the causative genetic differences that give rise to observed phenotypic variation. Association mapping facilitates the association between genetic markers and phenotype in unstructured and complex populations, identifying molecular markers for assisted selection and breeding. Also, genomic data provide in silico identification and characterization of genes and gene families related to important traits, enabling new tools for molecular marker assisted selection in tree breeding. Deep sequencing of transcriptomes is also a powerful tool for the analysis of precise expression levels of each gene in a sample. It consists in quantifying short cDNA reads, obtained by NGS technologies, in order to compare the entire transcriptomes between genotypes and environmental conditions. The miRNAs are non-coding short RNAs involved in the regulation of different physiological processes, which can be identified by high-throughput sequencing of RNA libraries obtained by reverse transcription of purified short RNAs, and by in silico comparison with known miRNAs from other species. All together, NGS techniques and their applications have increased the resources for plant breeding in tree species, closing the

Genetic diversity and population structure inferred from the partially duplicated genome of domesticated carp, Cyprinus carpio L.

Directory of Open Access Journals (Sweden)

Feldman Marcus W

2007-04-01

Full Text Available Abstract Genetic relationships among eight populations of domesticated carp (Cyprinus carpio L., a species with a partially duplicated genome, were studied using 12 microsatellites and 505 AFLP bands. The populations included three aquacultured carp strains and five ornamental carp (koi variants. Grass carp (Ctenopharyngodon idella was used as an outgroup. AFLP-based gene diversity varied from 5% (grass carp to 32% (koi and reflected the reasonably well understood histories and breeding practices of the populations. A large fraction of the molecular variance was due to differences between aquacultured and ornamental carps. Further analyses based on microsatellite data, including cluster analysis and neighbor-joining trees, supported the genetic distinctiveness of aquacultured and ornamental carps, despite the recent divergence of the two groups. In contrast to what was observed for AFLP-based diversity, the frequency of heterozygotes based on microsatellites was comparable among all populations. This discrepancy can potentially be explained by duplication of some loci in Cyprinus carpio L., and a model that shows how duplication can increase heterozygosity estimates for microsatellites but not for AFLP loci is discussed. Our analyses in carp can help in understanding the consequences of genotyping duplicated loci and in interpreting discrepancies between dominant and co-dominant markers in species with recent genome duplication.

Photoinactivation of major bacterial pathogens in aquaculture

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Heyong Jin Roh

2016-08-01

Full Text Available Abstract Background Significant increases in the bacterial resistance to various antibiotics have been found in fish farms. Non-antibiotic therapies for infectious diseases in aquaculture are needed. In recent years, light-emitting diode technology has been applied to the inactivation of pathogens, especially those affecting humans. The purpose of this study was to assess the effect of blue light (wavelengths 405 and 465 nm on seven major bacterial pathogens that affect fish and shellfish important in aquaculture. Results We successfully demonstrate inactivation activity of a 405/465-nm LED on selected bacterial pathogens. Although some bacteria were not fully inactivated by the 465-nm light, the 405-nm light had a bactericidal effect against all seven pathogens, indicating that blue light can be effective without the addition of a photosensitizer. Photobacterium damselae, Vibrio anguillarum, and Edwardsiella tarda were the most susceptible to the 405-nm light (36.1, 41.2, and 68.4 J cm−2, respectively, produced one log reduction in the bacterial populations, whereas Streptococcus parauberis was the least susceptible (153.8 J cm−2 per one log reduction. In general, optical density (OD values indicated that higher bacterial densities were associated with lower inactivating efficacy, with the exception of P. damselae and Vibrio harveyi. In conclusion, growth of the bacterial fish and shellfish pathogens evaluated in this study was inactivated by exposure to either the 405- or 465-nm light. In addition, inactivation was dependent on exposure time. Conclusions This study presents that blue LED has potentially alternative therapy for treating fish and shellfish bacterial pathogens. It has great advantages in aspect of eco-friendly treating methods differed from antimicrobial methods.

Genome survey sequencing and genetic background characterization of Gracilariopsis lemaneiformis (Rhodophyta) based on next-generation sequencing.

Science.gov (United States)

Zhou, Wei; Hu, Yiyi; Sui, Zhenghong; Fu, Feng; Wang, Jinguo; Chang, Lianpeng; Guo, Weihua; Li, Binbin

2013-01-01

Gracilariopsis lemaneiformis has a high economic value and is one of the most important aquaculture species in China. Despite it is economic importance, it has remained largely unstudied at the genomic level. In this study, we conducted a genome survey of Gp. lemaneiformis using next-generation sequencing (NGS) technologies. In total, 18.70 Gb of high-quality sequence data with an estimated genome size of 97 Mb were obtained by HiSeq 2000 sequencing for Gp. lemaneiformis. These reads were assembled into 160,390 contigs with a N50 length of 3.64 kb, which were further assembled into 125,685 scaffolds with a total length of 81.17 Mb. Genome analysis predicted 3490 genes and a GC% content of 48%. The identified genes have an average transcript length of 1,429 bp, an average coding sequence size of 1,369 bp, 1.36 exons per gene, exon length of 1,008 bp, and intron length of 191 bp. From the initial assembled scaffold, transposable elements constituted 54.64% (44.35 Mb) of the genome, and 7737 simple sequence repeats (SSRs) were identified. Among these SSRs, the trinucleotide repeat type was the most abundant (up to 73.20% of total SSRs), followed by the di- (17.41%), tetra- (5.49%), hexa- (2.90%), and penta- (1.00%) nucleotide repeat type. These characteristics suggest that Gp. lemaneiformis is a model organism for genetic study. This is the first report of genome-wide characterization within this taxon.

Genome Survey Sequencing and Genetic Background Characterization of Gracilariopsis lemaneiformis (Rhodophyta) Based on Next-Generation Sequencing

Science.gov (United States)

Sui, Zhenghong; Fu, Feng; Wang, Jinguo; Chang, Lianpeng; Guo, Weihua; Li, Binbin

2013-01-01

Gracilariopsis lemaneiformis has a high economic value and is one of the most important aquaculture species in China. Despite it is economic importance, it has remained largely unstudied at the genomic level. In this study, we conducted a genome survey of Gp. lemaneiformis using next-generation sequencing (NGS) technologies. In total, 18.70 Gb of high-quality sequence data with an estimated genome size of 97 Mb were obtained by HiSeq 2000 sequencing for Gp. lemaneiformis. These reads were assembled into 160,390 contigs with a N50 length of 3.64 kb, which were further assembled into 125,685 scaffolds with a total length of 81.17 Mb. Genome analysis predicted 3490 genes and a GC% content of 48%. The identified genes have an average transcript length of 1,429 bp, an average coding sequence size of 1,369 bp, 1.36 exons per gene, exon length of 1,008 bp, and intron length of 191 bp. From the initial assembled scaffold, transposable elements constituted 54.64% (44.35 Mb) of the genome, and 7737 simple sequence repeats (SSRs) were identified. Among these SSRs, the trinucleotide repeat type was the most abundant (up to 73.20% of total SSRs), followed by the di- (17.41%), tetra- (5.49%), hexa- (2.90%), and penta- (1.00%) nucleotide repeat type. These characteristics suggest that Gp. lemaneiformis is a model organism for genetic study. This is the first report of genome-wide characterization within this taxon. PMID:23875008

Climate adaptation and innovation in Mekong aquaculture ...

International Development Research Centre (IDRC) Digital Library (Canada)

Climate adaptation and innovation in Mekong aquaculture – AQUADAPT Mekong ... severe weather events and rising sea levels that impact regional hydrology. ... Research and Development Institute, Cambodia; National University of Laos; ...

Read length and repeat resolution: Exploring prokaryote genomes using next-generation sequencing technologies

KAUST Repository

Cahill, Matt J.

2010-07-12

Background: There are a growing number of next-generation sequencing technologies. At present, the most cost-effective options also produce the shortest reads. However, even for prokaryotes, there is uncertainty concerning the utility of these technologies for the de novo assembly of complete genomes. This reflects an expectation that short reads will be unable to resolve small, but presumably abundant, repeats. Methodology/Principal Findings: Using a simple model of repeat assembly, we develop and test a technique that, for any read length, can estimate the occurrence of unresolvable repeats in a genome, and thus predict the number of gaps that would need to be closed to produce a complete sequence. We apply this technique to 818 prokaryote genome sequences. This provides a quantitative assessment of the relative performance of various lengths. Notably, unpaired reads of only 150nt can reconstruct approximately 50% of the analysed genomes with fewer than 96 repeat-induced gaps. Nonetheless, there is considerable variation amongst prokaryotes. Some genomes can be assembled to near contiguity using very short reads while others require much longer reads. Conclusions: Given the diversity of prokaryote genomes, a sequencing strategy should be tailored to the organism under study. Our results will provide researchers with a practical resource to guide the selection of the appropriate read length. 2010 Cahill et al.

Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.

Directory of Open Access Journals (Sweden)

Matt J Cahill

Full Text Available BACKGROUND: There are a growing number of next-generation sequencing technologies. At present, the most cost-effective options also produce the shortest reads. However, even for prokaryotes, there is uncertainty concerning the utility of these technologies for the de novo assembly of complete genomes. This reflects an expectation that short reads will be unable to resolve small, but presumably abundant, repeats. METHODOLOGY/PRINCIPAL FINDINGS: Using a simple model of repeat assembly, we develop and test a technique that, for any read length, can estimate the occurrence of unresolvable repeats in a genome, and thus predict the number of gaps that would need to be closed to produce a complete sequence. We apply this technique to 818 prokaryote genome sequences. This provides a quantitative assessment of the relative performance of various lengths. Notably, unpaired reads of only 150nt can reconstruct approximately 50% of the analysed genomes with fewer than 96 repeat-induced gaps. Nonetheless, there is considerable variation amongst prokaryotes. Some genomes can be assembled to near contiguity using very short reads while others require much longer reads. CONCLUSIONS: Given the diversity of prokaryote genomes, a sequencing strategy should be tailored to the organism under study. Our results will provide researchers with a practical resource to guide the selection of the appropriate read length.

Read length and repeat resolution: Exploring prokaryote genomes using next-generation sequencing technologies

KAUST Repository

Cahill, Matt J.; Kö ser, Claudio U.; Ross, Nicholas E.; Archer, John A.C.

2010-01-01

Background: There are a growing number of next-generation sequencing technologies. At present, the most cost-effective options also produce the shortest reads. However, even for prokaryotes, there is uncertainty concerning the utility of these technologies for the de novo assembly of complete genomes. This reflects an expectation that short reads will be unable to resolve small, but presumably abundant, repeats. Methodology/Principal Findings: Using a simple model of repeat assembly, we develop and test a technique that, for any read length, can estimate the occurrence of unresolvable repeats in a genome, and thus predict the number of gaps that would need to be closed to produce a complete sequence. We apply this technique to 818 prokaryote genome sequences. This provides a quantitative assessment of the relative performance of various lengths. Notably, unpaired reads of only 150nt can reconstruct approximately 50% of the analysed genomes with fewer than 96 repeat-induced gaps. Nonetheless, there is considerable variation amongst prokaryotes. Some genomes can be assembled to near contiguity using very short reads while others require much longer reads. Conclusions: Given the diversity of prokaryote genomes, a sequencing strategy should be tailored to the organism under study. Our results will provide researchers with a practical resource to guide the selection of the appropriate read length. 2010 Cahill et al.

The commercialization of genome-editing technologies.

Science.gov (United States)

Brinegar, Katelyn; K Yetisen, Ali; Choi, Sun; Vallillo, Emily; Ruiz-Esparza, Guillermo U; Prabhakar, Anand M; Khademhosseini, Ali; Yun, Seok-Hyun

2017-11-01

The emergence of new gene-editing technologies is profoundly transforming human therapeutics, agriculture, and industrial biotechnology. Advances in clustered regularly interspaced short palindromic repeats (CRISPR) have created a fertile environment for mass-scale manufacturing of cost-effective products ranging from basic research to translational medicine. In our analyses, we evaluated the patent landscape of gene-editing technologies and found that in comparison to earlier gene-editing techniques, CRISPR has gained significant traction and this has established dominance. Although most of the gene-editing technologies originated from the industry, CRISPR has been pioneered by academic research institutions. The spinout of CRISPR biotechnology companies from academic institutions demonstrates a shift in entrepreneurship strategies that were previously led by the industry. These academic institutions, and their subsequent companies, are competing to generate comprehensive intellectual property portfolios to rapidly commercialize CRISPR products. Our analysis shows that the emergence of CRISPR has resulted in a fivefold increase in genome-editing bioenterprise investment over the last year. This entrepreneurial movement has spurred a global biotechnology revolution in the realization of novel gene-editing technologies. This global shift in bioenterprise will continue to grow as the demand for personalized medicine, genetically modified crops and environmentally sustainable biofuels increases. However, the monopolization of intellectual property, negative public perception of genetic engineering and ambiguous regulatory policies may limit the growth of these market segments.

Application of CRISPR technology in genome editing in agriculture -swine

Science.gov (United States)

Decades of selective breeding in agricultural species has led to the derivation of stronger and fitter animals with improved production traits. However, often co-segregating with beneficial traits are less desirable traits. With the plethora of genome data and annotation, has come the technology t...

What shapes food value chains? Lessons from aquaculture in Asia

DEFF Research Database (Denmark)

Jespersen, Karen Sau; Kelling, I; Ponte, Stefano

2014-01-01

In this article, we explain what shapes food value chains through the analysis of selected aquaculture industries in four key Asian producing countries. Worldwide production of aquatic resources has grown rapidly in the past few decades, and aquaculture production in Asia has played a decisive role...... in this growth. We examine the main forms of coordination found along these value chains and the role that institutional frameworks play in governing them. We observe that negative publicity, driven by NGO and media campaigns, has led to increased use of third-party certification and the adoption of public...... and private standards. We find that the most sophisticated aquaculture operations in Asia are found in value chains led by retailers and branded processors and where the quality of domestic institutional frameworks has facilitated compliance with increasing demands from buyers overseas. Finally, we reflect...

Performance comparison of two efficient genomic selection methods (gsbay & MixP) applied in aquacultural organisms

Science.gov (United States)

Su, Hailin; Li, Hengde; Wang, Shi; Wang, Yangfan; Bao, Zhenmin

2017-02-01

Genomic selection is more and more popular in animal and plant breeding industries all around the world, as it can be applied early in life without impacting selection candidates. The objective of this study was to bring the advantages of genomic selection to scallop breeding. Two different genomic selection tools MixP and gsbay were applied on genomic evaluation of simulated data and Zhikong scallop ( Chlamys farreri) field data. The data were compared with genomic best linear unbiased prediction (GBLUP) method which has been applied widely. Our results showed that both MixP and gsbay could accurately estimate single-nucleotide polymorphism (SNP) marker effects, and thereby could be applied for the analysis of genomic estimated breeding values (GEBV). In simulated data from different scenarios, the accuracy of GEBV acquired was ranged from 0.20 to 0.78 by MixP; it was ranged from 0.21 to 0.67 by gsbay; and it was ranged from 0.21 to 0.61 by GBLUP. Estimations made by MixP and gsbay were expected to be more reliable than those estimated by GBLUP. Predictions made by gsbay were more robust, while with MixP the computation is much faster, especially in dealing with large-scale data. These results suggested that both algorithms implemented by MixP and gsbay are feasible to carry out genomic selection in scallop breeding, and more genotype data will be necessary to produce genomic estimated breeding values with a higher accuracy for the industry.

Complete genome sequence of the European sheatfish virus.

Science.gov (United States)

Mavian, Carla; López-Bueno, Alberto; Fernández Somalo, María Pilar; Alcamí, Antonio; Alejo, Alí

2012-06-01

Viral diseases are an increasing threat to the thriving aquaculture industry worldwide. An emerging group of fish pathogens is formed by several ranaviruses, which have been isolated at different locations from freshwater and seawater fish species since 1985. We report the complete genome sequence of European sheatfish ranavirus (ESV), the first ranavirus isolated in Europe, which causes high mortality rates in infected sheatfish (Silurus glanis) and in other species. Analysis of the genome sequence shows that ESV belongs to the amphibian-like ranaviruses and is closely related to the epizootic hematopoietic necrosis virus (EHNV), a disease agent geographically confined to the Australian continent and notifiable to the World Organization for Animal Health.

Atlantic salmon breeding program at the National Cold Water Marine Aquaculture Center

Science.gov (United States)

The USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC) in Franklin, ME has been supporting the U.S. coldwater marine aquaculture industry for the past thirteen years by developing a genetically improved North American Atlantic salmon. The St. John's River stock was chosen as the focal ...

Lessons from two high CO2 worlds - future oceans and intensive aquaculture.

Science.gov (United States)

Ellis, Robert P; Urbina, Mauricio A; Wilson, Rod W

2017-06-01

Exponentially rising CO 2 (currently ~400 μatm) is driving climate change and causing acidification of both marine and freshwater environments. Physiologists have long known that CO 2 directly affects acid-base and ion regulation, respiratory function and aerobic performance in aquatic animals. More recently, many studies have demonstrated that elevated CO 2 projected for end of this century (e.g. 800-1000 μatm) can also impact physiology, and have substantial effects on behaviours linked to sensory stimuli (smell, hearing and vision) both having negative implications for fitness and survival. In contrast, the aquaculture industry was farming aquatic animals at CO 2 levels that far exceed end-of-century climate change projections (sometimes >10 000 μatm) long before the term 'ocean acidification' was coined, with limited detrimental effects reported. It is therefore vital to understand the reasons behind this apparent discrepancy. Potential explanations include 1) the use of 'control' CO 2 levels in aquaculture studies that go beyond 2100 projections in an ocean acidification context; 2) the relatively benign environment in aquaculture (abundant food, disease protection, absence of predators) compared to the wild; 3) aquaculture species having been chosen due to their natural tolerance to the intensive conditions, including CO 2 levels; or 4) the breeding of species within intensive aquaculture having further selected traits that confer tolerance to elevated CO 2 . We highlight this issue and outline the insights that climate change and aquaculture science can offer for both marine and freshwater settings. Integrating these two fields will stimulate discussion on the direction of future cross-disciplinary research. In doing so, this article aimed to optimize future research efforts and elucidate effective mitigation strategies for managing the negative impacts of elevated CO 2 on future aquatic ecosystems and the sustainability of fish and shellfish

Effects of semi-continous peracetic acid dosing on rainbow trout Oncorhynchus mykiss performance, water quality, and off-flavor compounds in recirculation aquaculture systems

Science.gov (United States)

Water clarifying and disinfection techniques such as ozonation and ultraviolet irradiation are commonly used in recirculation aquaculture systems (RAS); however, the capital and operating costs of these technologies are expensive. Cost-effective treatment options that maintain fish health and simult...

Attitudinal Factors and Personal Characteristics Influence Support for Shellfish Aquaculture in Rhode Island (US) Coastal Waters.

Science.gov (United States)

Dalton, Tracey M; Jin, Di

2018-05-01

This study explores public interests associated with shellfish aquaculture development in coastal waters of Rhode Island (US). Specifically, we examine (1) the levels of public support for (or opposition to) shellfish aquaculture development and (2) factors driving the levels of support, using survey data and ordinal logistic regressions. Results of the analysis identify several key attitudinal factors affecting individual's support for shellfish aquaculture in Rhode Island (RI). The level of support is positively associated with attitudes related to shellfish aquaculture's benefits to the local economy and its role as a nutritional food option, and negatively influenced by attitudes related to aquaculture farms' effects on aesthetic quality and their interference with other uses. Findings highlight that support for (or opposition to) aquaculture in RI is driven more by attitudes associated with social impacts than by those associated with environmental impacts. The level of support is also affected by personal characteristics related to an individual's participation in recreational activities. For instance, bicycle riders tend to be supportive of shellfish aquaculture while respondents who participate in sailing and birding are less supportive. By identifying the broader public's interests in shellfish aquaculture, findings from this study and others like it can be used to address public concerns, incorporate public perceptions and attitudes into permitting decisions, and develop outreach targeted at specific stakeholder groups.

Aquaculture in Coastal and Marine US Waters

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Aquaculture, also known as aquafarming, is the farming of aquatic organisms such as fish, crustaceans, mollusks, and aquatic plants. The presence and location of...

Aquaculture: a rapidly growing and significant source of sustainable food? Status, transitions and potential.

Science.gov (United States)

Little, D C; Newton, R W; Beveridge, M C M

2016-08-01

The status and potential of aquaculture is considered as part of a broader food landscape of wild aquatic and terrestrial food sources. The rationale and resource base required for the development of aquaculture are considered in the context of broader societal development, cultural preferences and human needs. Attention is drawn to the uneven development and current importance of aquaculture globally as well as its considerable heterogeneity of form and function compared with established terrestrial livestock production. The recent drivers of growth in demand and production are examined and the persistent linkages between exploitation of wild stocks, full life cycle culture and the various intermediate forms explored. An emergent trend for sourcing aquaculture feeds from alternatives to marine ingredients is described and the implications for the sector with rapidly growing feed needs discussed. The rise of non-conventional and innovative feed ingredients, often shared with terrestrial livestock, are considered, including aquaculture itself becoming a major source of marine ingredients. The implications for the continued expected growth of aquaculture are set in the context of sustainable intensification, with the challenges that conventional intensification and emergent integration within, and between, value chains explored. The review concludes with a consideration of the implications for dependent livelihoods and projections for various futures based on limited resources but growing demand.

Aquaculture research and management in the telecoupled Belt and Road Initiative countries and beyond

Science.gov (United States)

Yang, W.; Ying, Z.; Marín, T.

2017-12-01

Due to the continuous growth in aquatic product consumption, globally the total production of aquatic products has increased by 20% in the past two decades. In 2014, for the first time, the production of aquatic products for direct human consumption from aquaculture surpassed that of wild catch. In 2016, the total production of global aquatic products reached 170 million tons, of which 45% comes from the aquaculture sector. More importantly, over 80% of the global aquaculture production occurs in the Belt and Road Initiative countries. Particularly, China alone contributes to two third of the global share. The rapid expansion and intensification of aquaculture have many environmental and socioeconomic impacts both at the cultivation places and also in places where feed is produced; however, these telecoupled processes and effects are largely unknown in a quantitative manner. Here, we apply the telecoupling framework to analyze the aquaculture trade among China and other Belt and Road Initiative countries and beyond. The integrated telecoupling framework helps to demonstrate the environmental and socioeconomic interactions among the feed (and aquatic product) sending, receiving, and spillover systems. It also provides a platform to model the telecoupled processes and effects across multiple remotely connected systems. Moreover, the application of the framework reveals many research gaps and management needs on aquaculture research and management.

Fishmeal Supplier Evaluation and Selection for Aquaculture Enterprise Sustainability with a Fuzzy MCDM Approach

Directory of Open Access Journals (Sweden)

Tsung-Hsien Wu

2017-11-01

Full Text Available In the aquaculture industry, feed that is of poor quality or nutritionally imbalanced can cause problems including low weight, poor growth, poor palatability, and increased mortality, all of which can induce a decrease in aquaculture production. Fishmeal is considered a better source of protein and its addition as an ingredient in the aquafeed makes aquatic animals grow fast and healthy. This means that fishmeal is the most important feed ingredient in aquafeed for the aquaculture industry. For the aquaculture industry in Taiwan, about 144,000 ton/USD $203,245,000 of fishmeal was imported, mostly from Peru, in 2016. Therefore, the evaluation and selection of fishmeal suppliers is a very important part of the decision-making process for a Taiwanese aquaculture enterprise. This study constructed a multiple criteria decision-making evaluation model for the selection of fishmeal suppliers using the VlseKriterijumska Optimizacija I Kompromisno Resenje (VIKOR approach based on the weights obtained with the entropy method in a fuzzy decision-making environment. This hybrid approach could effectively and conveniently measure the comprehensive performance of the main Peruvian fishmeal suppliers for practical applications. In addition, the results and processes described herein function as a good reference for an aquaculture enterprise in making decisions when purchasing fishmeal.

Modelling receiving water quality responses to brackishwater shrimp aquaculture farm effluents

International Nuclear Information System (INIS)

Roy Chaudhury, R.K.; Ramana Murty, V.; Ravindran, M.

1999-01-01

The objective was to perform a waste load allocation and determine the extent of aquaculture that the creeks can sustain, by meeting the water quality criteria for both the creek ecosystem and pond culture. Based on these results, similar assessments may be performed for other sites supporting large scale aquaculture activities. This paper introduces the sampling program and modelling methodology of the study

77 FR 50082 - Notice of Opportunity To Submit Content Request for the 2013 Census of Aquaculture

Science.gov (United States)

2012-08-20

... Content Request for the 2013 Census of Aquaculture AGENCY: National Agricultural Statistics Service... requests for the 2013 Census of Aquaculture. This census is required by law under the ``Census of... results of the 2005 Census of Aquaculture were released in October 2006. For more information, visit...

Economic Valuation of Mangroves for Comparison with Commercial Aquaculture in South Sulawesi, Indonesia

Directory of Open Access Journals (Sweden)

Abdul Malik

2015-08-01

Full Text Available Mangroves are recognized as a provider of a variety of products and essential ecosystem services that contribute significantly to the livelihood of local communities. However, over the past decades, mangroves in many tropical areas including the Takalar district, South Sulawesi have degraded and decreased mainly due to conversion to aquaculture. Currently, little is known about the economic benefits of commercialization of aquaculture as compared to those derived from mangroves in the form of products and services. Here, we estimate the Total Economic Value (TEV of mangrove benefits in order to compare it with the benefit value of commercial aquaculture. Market prices, replacement costs, benefit transfer value and Cost-Benefit Analyses (CBA have been used for value determination and comparison. The results show that the per year TEV of mangroves in the study area (Takalar district, South Sulawesi was in the range of 4370 thousands USD (kUSD to 10,597 kUSD or 4 kUSD to 8 kUSD per hectare (the highest value contribution derived from the indirect use value (94%, whereas commercial aquaculture had a net benefit value of 228 kUSD or 3 kUSD per hectare. In addition, the comparison of Net Present Value (NPV between the benefit value of mangroves and that of commercial aquaculture revealed that conversion of mangroves into commercial aquaculture was not economically beneficial when the analysis was expanded to cover the costs of environmental and forest rehabilitation.

Fishery and Aquaculture Relationship in the Mediterranean: Present and Future

Directory of Open Access Journals (Sweden)

G. RELINI

2003-12-01

Full Text Available Although the Mediterranean represents only 0.8% of the world seas, it is the site of a very long-established fishing activity, characterized mainly by multispecific catch and by artisanal or coastal activity, resulting from a mosaic of very diversified structures and gears, along more than 45,000 km of coastline. Two main biological features of this sea are the occurrence of a large richness of species (it represents 5.5% - 7% of world marine fauna and 16.6% of macrophyta, which stands in contrast with its ‘trophic poverty’ and the absence of large monospecific fishery, except for some small and large pelagic fish. Another biological characteristic of Mare Nostrumis the high invasion of exotic species, some exploited by fishery and aquaculture, some others quite dangerous. For the entire Mediterranean and Black Sea, the production (catch + aquaculture had been steadily increasing over the period 1972-1988 from 1,140,000 t to 2,080,000 t . The period 1988-1991 has shown a drastic drop in catches (in 1991: 1,400,000 t. From 1990 to 1995 the total catch increased to 1,701,379 t then decreased and in 2000 reached 1,485,046 t . In 2000 Turkey had the first place with 496,174 t, 26.9% of the total value (1,846,026 t, including fishing and aquaculture, followed by Italy with 25%, Greece 9%, Spain 7.6% and Algeria 5.4%. As in many parts of the world, aquaculture production in the Mediterranean is rapidly expanding. In 1970 the total aquaculture production was about 18,297 t of which 74.3% produced in Italy. In 2000 a value of 358,614 t was reached, about 1/4 of the total fishery catch, while the world aquaculture production corresponds to half of the world total catch. Italy is still the main producer with 46.7% , followed by Greece with 21.5%, Turkey 9.9% and France 6.7%. A sharp drop in the production of the European eel ( Anguilla anguilla and of the European flat oyster ( Ostrea edulis is recorded. Positive and negative interactions between

Observation of Wild Seaweed Species in Labuhanbua Waters, Indonesia: a preliminary assessment for aquaculture development

Directory of Open Access Journals (Sweden)

Erlania .

2017-05-01

Full Text Available Seaweed industry has been growing up and is supplied by either wild or cultivated seaweed crops. This study was aimed to present relevant information regarding ecological availability of wild seaweed in Labuhanbua coastal waters, Sumbawa Regency, West Nusa Tenggara and potential use of important species as candidate species for aquaculture. 46 sampling stations were determined along line transects perpendicular to coastal line; and seaweeds sampling were conducted during low tide by using 1 x 1 m2 quadrat transect. Field data consist of in-situ parameter including number of seaweed species and coverage area of each species; and ex-situ parameters consist of carbohydrate, protein, total C, total N, and total P content of seaweeds. The results showed that 33 species were found and three species has the most widely distribu tion, i.e. Padina sp., Dictyota dichotoma, and Gracilaria salicornia. Turbinaria, Dictyota, Padina, Stoechospermum, Hydroclathrus, Halimeda, and Chaetomorpha might be some important species that could be develop as aquaculture species candidates among other uncultivated species that were found along this study location. They have potencies as human food, livestock feed, neutraceuicals, cosmetics, pulp, textile, biofuel and any other industries; but conversely, they were found in lower density at Labuhanbua coastal waters. These species should be develop through aquaculture technology, involve genetic improvement and possibly genetic engineering. Commercial scale cultivation of those important seaweed species will contribute to industrial needs and prevent decreasing of wild seaweed availability in natural ecosystem.

Economic analysis of technological innovations to improve sustainability of pangasius production in Vietnam

NARCIS (Netherlands)

Ngoc, Pham Thi Anh

2016-01-01

In response to increasing concerns about sustainable production, a growing number of European customers expect seafood products to be certified, for example by the Aquaculture Stewardship Council (ASC) certification. Water purification technologies such as Recirculating Aquaculture Systems (RAS)

New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

Energy Technology Data Exchange (ETDEWEB)

Schmutz, Jeremy

2013-03-01

Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on New approaches and technologies to sequence de novo plant reference genomes at the 8th Annual Genomics of Energy Environment Meeting on March 27, 2013 in Walnut Creek, CA.

Measuring the potential for sustainable intensification of aquaculture in Bangladesh using life cycle assessment.

Science.gov (United States)

Henriksson, Patrik John Gustav; Belton, Ben; Jahan, Khondker Murshed-E-; Rico, Andreu

2018-03-20

Food production is a major driver of global environmental change and the overshoot of planetary sustainability boundaries. Greater affluence in developing nations and human population growth are also increasing demand for all foods, and for animal proteins in particular. Consequently, a growing body of literature calls for the sustainable intensification of food production, broadly defined as "producing more using less". Most assessments of the potential for sustainable intensification rely on only one or two indicators, meaning that ecological trade-offs among impact categories that occur as production intensifies may remain unaccounted for. The present study addresses this limitation using life cycle assessment (LCA) to quantify six local and global environmental consequences of intensifying aquaculture production in Bangladesh. Production data are from a unique survey of 2,678 farms, and results show multidirectional associations between the intensification of aquaculture production and its environmental impacts. Intensification (measured in material and economic output per unit primary area farmed) is positively correlated with acidification, eutrophication, and ecotoxicological impacts in aquatic ecosystems; negatively correlated with freshwater consumption; and indifferent with regard to global warming and land occupation. As production intensifies, the geographical locations of greenhouse gas (GHG) emissions, acidifying emissions, freshwater consumption, and land occupation shift from the immediate vicinity of the farm to more geographically dispersed telecoupled locations across the globe. Simple changes in fish farming technology and management practices that could help make the global transition to more intensive forms of aquaculture be more sustainable are identified. Copyright © 2018 the Author(s). Published by PNAS.

Microplastics in the context of regulation of commercial shellfish aquaculture operations.

Science.gov (United States)

Schoof, Rosalind A; DeNike, Jesse

2017-05-01

Shellfish aquaculture in the Salish Sea (encompassing the Strait of Juan de Fuca, Puget Sound, and the Georgia Strait) is a major source of clams, oysters, and mussels in the United States and Canada. Plastic gear is necessary for the viability of many of these operations. During the past few years, shellfish farm permits issued in Washington State have been challenged on various bases that have included allegations that the plastic gear is releasing microplastics, commonly defined as particles less than 5 mm in diameter. Published survey data on sources of marine plastic debris demonstrate the very limited contribution of aquaculture gear. Both permits and industry codes of practice provide procedures to minimize loss of gear to the marine environment. Plastic gear is also designed specifically to maintain its integrity and not degrade in the marine environment. Plastic degradation is greatest on beaches with high UV exposure, whereas aquaculture gear is mostly underwater and/or covered by biofoulants. Available data for microplastics in water, sediment, and biota of the Salish Sea do not suggest significant release of microplastics from shellfish aquaculture operations. Integr Environ Assess Manag 2017;13:522-527. © 2017 SETAC. © 2017 SETAC.

Use of antimicrobial agents in aquaculture.

Science.gov (United States)

Park, Y H; Hwang, S Y; Hong, M K; Kwon, K H

2012-04-01

The aquaculture industry has grown dramatically, and plays an important role in the world's food supply chain. Antimicrobial resistance in bacteria associated with food animals receives much attention, and drug use in aquaculture is also an important issue. There are many differences between aquatic and terrestrial management systems, such as the methods used for administration of drugs. Unique problems are related to the application of drugs in aquatic environments. Residual drugs in fish products can affect people who consume them, and antimicrobials released into aquatic environments can select for resistant bacteria. Moreover, these antimicrobial-resistant bacteria, or their resistance genes, can be transferred to humans. To decrease the risks associated with the use of antimicrobials, various regulations have been developed. In addition, it is necessary to prevent bacterial diseases in aquatic animals by vaccination, to improve culture systems, and to monitor the amount of antimicrobial drugs used and the prevalence of antimicrobial-resistant bacteria.

Promoting Rural Income from Sustainable Aquaculture through ...

International Development Research Centre (IDRC) Digital Library (Canada)

... from Sustainable Aquaculture through Social Learning in Sri Lanka (CIFSRF) ... And, they will explore the role of women as community conduits for applying and ... Organization for Women in Science for the Developing World (OWSD), IDRC ...

Antimicrobial resistance genes in marine bacteria and human uropathogenic Escherichia coli from a region of intensive aquaculture.

Science.gov (United States)

Tomova, Alexandra; Ivanova, Larisa; Buschmann, Alejandro H; Rioseco, Maria Luisa; Kalsi, Rajinder K; Godfrey, Henry P; Cabello, Felipe C

2015-10-01

Antimicrobials are heavily used in Chilean salmon aquaculture. We previously found significant differences in antimicrobial-resistant bacteria between sediments from an aquaculture and a non-aquaculture site. We now show that levels of antimicrobial resistance genes (ARG) are significantly higher in antimicrobial-selected marine bacteria than in unselected bacteria from these sites. While ARG in tetracycline- and florfenicol-selected bacteria from aquaculture and non-aquaculture sites were equally frequent, there were significantly more plasmid-mediated quinolone resistance genes per bacterium and significantly higher numbers of qnrB genes in quinolone-selected bacteria from the aquaculture site. Quinolone-resistant urinary Escherichia coli from patients in the Chilean aquacultural region were significantly enriched for qnrB (including a novel qnrB gene), qnrS, qnrA and aac(6')-1b, compared with isolates from New York City. Sequences of qnrA1, qnrB1 and qnrS1 in quinolone-resistant Chilean E. coli and Chilean marine bacteria were identical, suggesting horizontal gene transfer between antimicrobial-resistant marine bacteria and human pathogens. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Pathogenic potentials of Aeromonas species isolated from aquaculture and abattoir environments.

Science.gov (United States)

Igbinosa, Isoken H; Beshiru, Abeni; Odjadjare, Emmanuel E; Ateba, Collins N; Igbinosa, Etinosa O

2017-06-01

The present study elucidated the presence of antibiotics resistance, virulence genes and biofilm potentials among Aeromonas species isolated from abattoir and aquaculture environments in Benin City, Nigeria. A total of 144 wastewater samples were obtained from two independent aquaculture and abattoir environments between May and October 2016. Aeromonas species were isolated on Glutamate Starch Phenol Red (GSP) agar and confirmed using API 20NE kits. Antimicrobial susceptibility profile of the isolates was carried out using standard disc diffusion assay while biofilm potentials were detected by the microtitre plate method and PCR technique was used to detect antibiotics resistance and virulence gene markers. Overall, 32 and 26 Aeromonas species were isolated from the abattoir and aquaculture environments respectively. Isolates from both environments were completely resistant (100%) to penicillin G, ertapenem and tetracycline; whereas aquaculture isolates exhibited absolute sensitivity (100%) towards cefepime. All the virulence gene markers (aerA, hlyA, alt, ast, laf, ascF-G, fla, lip, stx1, and stx2) investigated in this study (except laf) were detected in isolates from both environments. The laf genes were only detected in isolates from abattoir environments. Antibiotics resistant genes including pse, bla TEM and class 1 integron were detected in isolates from both environments. Majority of the isolates (53/58 91.4%) from both environments; demonstrated capacity for biofilm potential. The detection of antibiotic resistance and virulence gene markers as well as biofilm forming ability in Aeromonas species isolated from aquaculture and abattoir environments raise serious public health concern worthy of further investigation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Aquaculture et environnement: aspects réglementaires : journées d'études, Nantes, 6-7 octobre 1993

National Research Council Canada - National Science Library

1994-01-01

...) L'aquaculture in Italie; 6) L'aquaculture au sein de la Communaute economique europeenne; 7) Freshwater aquaculture in the United States, complying with environmental protection law and policy; 8...

REVIEW OF AQUACULTURAL PRODUCTION SYSTEM MODELS ...

African Journals Online (AJOL)

However, the complexity of an aquaculture system which result from multiple interactions makes it difficult to predict how the aquatic community will respond to changes with simple methods of analysis, especially if the methods address a single stressor at a time. These necessitated the development of numerous aquatic ...

Quality of antimicrobial products used in white leg shrimp (Litopenaeus vannamei) aquaculture in Northern Vietnam

DEFF Research Database (Denmark)

Tran, Kim Chi; Tran, Minh Phu; Phan, Thi Van

2018-01-01

Antimicrobials are important to treat diseases in aquaculture and the objective of this study was to evaluate the quality of antimicrobial products commonly used in white leg shrimp (Litopenaeus vannamei) aquaculture in Northern Vietnam. A total of 25 antimicrobial products were obtained from 20...... to strengthen diagnostic services, legislation and control of antimicrobial products in shrimp aquaculture and educate farmers on prudent antimicrobial use practices....

New developments in recirculating aquaculture systems in Europe: a perspective on environmental sustainability

NARCIS (Netherlands)

Martins, C.I.; Eding, E.H.; Verdegem, M.C.J.; Heinsbroek, L.T.N.; Schneider, O.; Blancheton, J.P.; Roque dÓrbcastel, E.; Verreth, J.A.J.

2010-01-01

The dual objective of sustainable aquaculture, i.e., to produce food while sustaining natural resources is achieved only when production systems with a minimum ecological impact are used. Recirculating aquaculture systems (RASs) provide opportunities to reduce water usage and to improve waste

Use of aquaculture ponds and other habitats by autumn migrating shorebirds along the lower Mississippi river.

Science.gov (United States)

Lehnen, Sarah E; Krementz, David G

2013-08-01

Populations of many shorebird species are declining; habitat loss and degradation are among the leading causes for these declines. Shorebirds use a variety of habitats along interior migratory routes including managed moist soil units, natural wetlands, sandbars, and agricultural lands such as harvested rice fields. Less well known is shorebird use of freshwater aquaculture facilities, such as commercial cat- and crayfish ponds. We compared shorebird habitat use at drained aquaculture ponds, moist soil units, agricultural areas, sandbars and other natural habitat, and a sewage treatment facility in the in the lower Mississippi River Alluvial Valley (LMAV) during autumn 2009. Six species: Least Sandpiper (Calidris minutilla), Killdeer (Charadrius vociferous), Semipalmated Sandpiper (Calidris pusilla), Pectoral Sandpiper (C. melanotos), Black-necked Stilt (Himantopus himantopus), and Lesser Yellowlegs (Tringa flavipes), accounted for 92 % of the 31,165 individuals observed. Sewage settling lagoons (83.4, 95 % confidence interval [CI] 25.3-141.5 birds/ha), drained aquaculture ponds (33.5, 95 % CI 22.4-44.6 birds/ha), and managed moist soil units on public lands (15.7, CI 11.2-20.3 birds/ha) had the highest estimated densities of shorebirds. The estimated 1,100 ha of drained aquaculture ponds available during autumn 2009 provided over half of the estimated requirement of 2,000 ha by the LMAV Joint Venture working group. However, because of the decline in the aquaculture industry, autumn shorebird habitats in the LMAV may be limited in the near future. Recognition of the current aquaculture habitat trends will be important to the future management activities of federal and state agencies. Should these aquaculture habitat trends continue, there may be a need for wildlife biologists to investigate other habitats that can be managed to offset the current and expected loss of aquaculture acreages. This study illustrates the potential for freshwater aquaculture to

A history of fish vaccination: science-based disease prevention in aquaculture.

Science.gov (United States)

Gudding, Roar; Van Muiswinkel, Willem B

2013-12-01

Disease prevention and control are crucial in order to maintain a sustainable aquaculture, both economically and environmentally. Prophylactic measures based on stimulation of the immune system of the fish have been an effective measure for achieving this goal. Immunoprophylaxis has become an important part in the successful development of the fish-farming industry. The first vaccine for aquaculture, a vaccine for prevention of yersiniosis in salmonid fish, was licensed in USA in 1976. Since then the use of vaccines has expanded to new countries and new species simultaneous with the growth of the aquaculture industry. This paper gives an overview of the achievements in fish vaccinology with particular emphasis on immunoprophylaxis as a practical tool for a successful development of bioproduction of aquatic animals. Copyright © 2013 Elsevier Ltd. All rights reserved.

Characteristics and environmental carrying capacities of coastal area in Yogyakarta Special Region for aquaculture

Science.gov (United States)

Triyatmo, B.; Rustadi; Priyono, S. B.

2018-03-01

The purpose of this study were to determine characteristics and environmental carrying capacities of coastal area in Yogyakarta Special Region for aquaculture. This study was conducted in 2015 by characterizing land and water dynamics, land use, and the suitability of coastal environments for aquaculture. Evaluation on the coastal environments suitability for aquaculture ponds was based on the landforms, soil properties, water quality and land. Selection of coastal locations for aquaculture development was based on the level of suitability of coastal environment. The results showed that the coastal in Kulon Progo and Bantul Regencies were characterized by sand dune and beach ridge with sandy soil texture, while in Gunungkidul Regency was characterized by limestone hill with rocky texture. Water sources of the coastal area were the sea, river, and ground water with the salinity of 31–37, 7–11, 7–31 ppt and pH of 7.4–8.4 7.0–8.2 and 7.4–9.9, respectively. The coastal lands were used for seasonal/annual planting, ponds, fish landing sites, tourism areas and conservation areas. The coastal carrying capacity was rather suitable for aquaculture, especially in the sandy soil area. Aquaculture in that area can be done intensively for shrimp (Litopenaeus vannamei), using biocrete (biological material) or plastic sheet.

Seawater circulating system in an aquaculture laboratory

Digital Repository Service at National Institute of Oceanography (India)

Chatterji, A.; Ingole, B.S.; Parulekar, A.H.

The note gives an account, for the first time in India, of an Aquaculture Laboratory with open type seawater circulating system developed at the National Institute of Oceanography, Goa, India. Besides describing the details of the system...

The Potential for Engineering Enhanced Functional-Feed Soybeans for Sustainable Aquaculture Feed.

Science.gov (United States)

Herman, Eliot M; Schmidt, Monica A

2016-01-01

Aquaculture is the most rapidly growing segment of global animal production that now surpasses wild-capture fisheries production and is continuing to grow 10% annually. Sustainable aquaculture needs to diminish, and progressively eliminate, its dependence on fishmeal-sourced feed from over-harvested fisheries. Sustainable aquafeed sources will need to be primarily of plant-origin. Soybean is currently the primary global vegetable-origin protein source for aquaculture. Direct exchange of soybean meal for fishmeal in aquafeed has resulted in reduced growth rates due in part to soybean's anti-nutritional proteins. To produce soybeans for use in aquaculture feeds a new conventional line has been bred termed Triple Null by stacking null alleles for the feed-relevant proteins Kunitz Trypsin Inhibitor, lectin, and P34 allergen. Triple Null is now being further enhanced as a platform to build additional transgene traits for vaccines, altered protein composition, and to produce high levels of β-carotene an intrinsic orange-colored aquafeed marker to distinguish the seeds from commodity beans and as the metabolic feedstock precursor of highly valued astaxanthin.

Risks of Using Antifouling Biocides in Aquaculture

Science.gov (United States)

Guardiola, Francisco Antonio; Cuesta, Alberto; Meseguer, José; Esteban, Maria Angeles

2012-01-01

Biocides are chemical substances that can deter or kill the microorganisms responsible for biofouling. The rapid expansion of the aquaculture industry is having a significant impact on the marine ecosystems. As the industry expands, it requires the use of more drugs, disinfectants and antifoulant compounds (biocides) to eliminate the microorganisms in the aquaculture facilities. The use of biocides in the aquatic environment, however, has proved to be harmful as it has toxic effects on the marine environment. Organic booster biocides were recently introduced as alternatives to the organotin compounds found in antifouling products after restrictions were imposed on the use of tributyltin (TBT). The replacement products are generally based on copper metal oxides and organic biocides. The biocides that are most commonly used in antifouling paints include chlorothalonil, dichlofluanid, DCOIT (4,5-dichloro-2-n-octyl-4-isothiazolin-3-one, Sea-nine 211®), Diuron, Irgarol 1051, TCMS pyridine (2,3,3,6-tetrachloro-4-methylsulfonyl pyridine), zinc pyrithione and Zineb. There are two types of risks associated with the use of biocides in aquaculture: (i) predators and humans may ingest the fish and shellfish that have accumulated in these contaminants and (ii) the development of antibiotic resistance in bacteria. This paper provides an overview of the effects of antifouling (AF) biocides on aquatic organisms. It also provides some insights into the effects and risks of these compounds on non-target organisms. PMID:22408407

Risks of Using Antifouling Biocides in Aquaculture

Directory of Open Access Journals (Sweden)

José Meseguer

2012-02-01

Full Text Available Biocides are chemical substances that can deter or kill the microorganisms responsible for biofouling. The rapid expansion of the aquaculture industry is having a significant impact on the marine ecosystems. As the industry expands, it requires the use of more drugs, disinfectants and antifoulant compounds (biocides to eliminate the microorganisms in the aquaculture facilities. The use of biocides in the aquatic environment, however, has proved to be harmful as it has toxic effects on the marine environment. Organic booster biocides were recently introduced as alternatives to the organotin compounds found in antifouling products after restrictions were imposed on the use of tributyltin (TBT. The replacement products are generally based on copper metal oxides and organic biocides. The biocides that are most commonly used in antifouling paints include chlorothalonil, dichlofluanid, DCOIT (4,5-dichloro-2-n-octyl-4-isothiazolin-3-one, Sea-nine 211®, Diuron, Irgarol 1051, TCMS pyridine (2,3,3,6-tetrachloro-4-methylsulfonyl pyridine, zinc pyrithione and Zineb. There are two types of risks associated with the use of biocides in aquaculture: (i predators and humans may ingest the fish and shellfish that have accumulated in these contaminants and (ii the development of antibiotic resistance in bacteria. This paper provides an overview of the effects of antifouling (AF biocides on aquatic organisms. It also provides some insights into the effects and risks of these compounds on non-target organisms.

Social Dynamics Shaping the Diffusion of Sustainable Aquaculture Innovations in the Solomon Islands

Directory of Open Access Journals (Sweden)

Jessica Blythe

2017-01-01

Full Text Available Sustainably feeding the world’s growing population represents one of our most significant challenges. Aquaculture is well positioned to make contributions towards this challenge. Yet, the translation of aquaculture production innovations into benefits for rural communities is constrained by a limited understanding of the social dynamics that influence the adoption of new agricultural practices. In this paper, we investigate the factors that shape the spread of small-scale tilapia aquaculture through rural Solomon Islands. Based on diffusion of innovation theory, we focus on three potentially influential factors: (i socio-economic characteristics of adopters; (ii the role of opinion leaders; and (iii characteristics of the innovation. We find that farmers who were wealthier, older, and had more diverse livelihoods were most likely to be adopters. Opinion leaders facilitated the adoption of tilapia aquaculture, but lacked the capacity to provide fundamental knowledge necessary to realize its potential benefits to food security. The paper argues for more explicit attention to the poorest households and makes the case for a deeper engagement with the broader social and institutional contexts that shape the adoption process. Aquaculture interventions that account for these social dynamics are critical for translating production innovations into sustainable benefits to rural communities.

Increasing pressure on freshwater resources due to terrestrial feed ingredients for aquaculture production

NARCIS (Netherlands)

Pahlow, G.; Oel, van P.R.; Mekonnen, M.M.; Hoekstra, A.Y.

2015-01-01

As aquaculture becomes more important for feeding the growing world population, so too do the required natural resources needed to produce aquaculture feed. While there is potential to replace fish meal and fish oil with terrestrial feed ingredients, it is important to understand both the positive

In vivo genome editing thrives with diversified CRISPR technologies

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Xun Ma

2018-03-01

Full Text Available Prokaryotic type II adaptive immune systems have been developed into the versatile CRISPR technology, which has been widely applied in site-specific genome editing and has revolutionized biomedical research due to its superior efficiency and flexibility. Recent studies have greatly diversified CRISPR technologies by coupling it with various DNA repair mechanisms and targeting strategies. These new advances have significantly expanded the generation of genetically modified animal models, either by including species in which targeted genetic modification could not be achieved previously, or through introducing complex genetic modifications that take multiple steps and cost years to achieve using traditional methods. Herein, we review the recent developments and applications of CRISPR-based technology in generating various animal models, and discuss the everlasting impact of this new progress on biomedical research.

Performance Study of Ceramic Filter Module in Recirculated Aquaculture System (RAS)

Science.gov (United States)

Ng, L. Y.; Ng, C. Y.

2017-06-01

The growth of world population has led to significant increase in seafood demand over the world. Aquaculture has been widely accepted by many countries to increase the seafood production owing to the decline of natural seafood resources. The aquaculture productivity, however, is directly linked to the pond water quality. In this study, attempts were made to employ ceramic micro-filter to improve the pond water quality through filtration processes. There were two batches of filtration processes, short term (1 hour) and long term (48 hours). Significant improvements on real pond water quality were recorded through the short term microfiltration process, which reduced turbidity (96%), total suspended solids (TSS) (80%), biochemical oxygen demand (BOD) (72%), chemical oxygen demand (COD) (55%), ammonia (60%), nitrate (96%) and phosphorus (83%). The long term filtration process also showed high efficiency in the removal of solid particle and organic matters. The results showed that all of the parameters were successfully reduced to acceptable ranges (turbidityfiltered pond water. Current study showed that the microfiltration using ceramic micro-filter has high potential to be used in recirculating aquaculture system throughout the aquaculture activities in order to maintain the pond water quality, thus, increase the survival rate of cultured species.

Predicting shifting sustainability tradeoffs in marine finfish aquaculture under climate change.

Science.gov (United States)

Sarà, Gianluca; Gouhier, Tarik C; Brigolin, Daniele; Porporato, Erika M D; Mangano, M Cristina; Mirto, Simone; Mazzola, Antonio; Pastres, Roberto

2018-05-03

Defining sustainability goals is a crucial but difficult task because it often involves the quantification of multiple interrelated and sometimes conflicting components. This complexity may be exacerbated by climate change, which will increase environmental vulnerability in aquaculture and potentially compromise the ability to meet the needs of a growing human population. Here, we developed an approach to inform sustainable aquaculture by quantifying spatio-temporal shifts in critical trade-offs between environmental costs and benefits using the time to reach the commercial size as a possible proxy of economic implications of aquaculture under climate change. Our results indicate that optimizing aquaculture practices by minimizing impact (this study considers as impact a benthic carbon deposition ≥ 1 gC m -2 d -1 ) will become increasingly difficult under climate change. Moreover, an increasing temperature will produce a poleward shift in sustainability trade-offs. These findings suggest that future sustainable management strategies and plans will need to account for the effects of climate change across scales. Overall, our results highlight the importance of integrating environmental factors in order to sustainably manage critical natural resources under shifting climatic conditions. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Enhancement of existing geothermal resource utilization by cascading to intensive aquaculture

Energy Technology Data Exchange (ETDEWEB)

Zachritz, W.H., II; Polka, R.; Schoenmackers

1996-04-01

A demonstration high rate aquaculture production system utilizing a cascaded geothermal resource was designed, constructed and operated to fulfill the objectives of this project. Analysis of the energy and water balances for the system indicated that the addition of an Aquaculture Facility expanded the use of the existing resource. This expanded use in no way affected the up- stream processes. Analysis of the system`s energy and water requirements indicated that the present resource was under-utilized and could be expanded. Energy requirements appeared more limiting than water use, but the existing system could be expanded to a culture volume of 72,000 gal. This system would have a potential production capacity of 93,600 lb/yr with a potential market value of $280,00/yr. Based on the results of this study, the heat remaining in the geothermal fluid from one square foot of operating greenhouse is sufficient to support six gallons of culture water for a high density aquaculture facility. Thus, the over 1.5M ft{sup 2} of existing greenhouse space in New Mexico, has the potential to create an aquaculture industry of nearly 9M gal. This translates to an annual production potential of 11.7M lb with a market value of $35.lM.

Aquaculture practices and the coastal marine environment

Digital Repository Service at National Institute of Oceanography (India)

Ingole, B.S.; Ansari, Z.A.; Sreepada, R.A.

. The size of the industry which is now beginning to emerge, the scale of its individual production units, raise questions concerning the high input rate of feed and chemical and a correspondingly high production of wastes. In intensive aquaculture system...

Genome Microscale Heterogeneity among Wild Potatoes Revealed by Diversity Arrays Technology Marker Sequences

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Alessandra Traini

2013-01-01

Full Text Available Tuber-bearing potato species possess several genes that can be exploited to improve the genetic background of the cultivated potato Solanum tuberosum. Among them, S. bulbocastanum and S. commersonii are well known for their strong resistance to environmental stresses. However, scant information is available for these species in terms of genome organization, gene function, and regulatory networks. Consequently, genomic tools to assist breeding are meager, and efficient exploitation of these species has been limited so far. In this paper, we employed the reference genome sequences from cultivated potato and tomato and a collection of sequences of 1,423 potato Diversity Arrays Technology (DArT markers that show polymorphic representation across the genomes of S. bulbocastanum and/or S. commersonii genotypes. Our results highlighted microscale genome sequence heterogeneity that may play a significant role in functional and structural divergence between related species. Our analytical approach provides knowledge of genome structural and sequence variability that could not be detected by transcriptome and proteome approaches.

Genome Microscale Heterogeneity among Wild Potatoes Revealed by Diversity Arrays Technology Marker Sequences.

Science.gov (United States)

Traini, Alessandra; Iorizzo, Massimo; Mann, Harpartap; Bradeen, James M; Carputo, Domenico; Frusciante, Luigi; Chiusano, Maria Luisa

2013-01-01

Tuber-bearing potato species possess several genes that can be exploited to improve the genetic background of the cultivated potato Solanum tuberosum. Among them, S. bulbocastanum and S. commersonii are well known for their strong resistance to environmental stresses. However, scant information is available for these species in terms of genome organization, gene function, and regulatory networks. Consequently, genomic tools to assist breeding are meager, and efficient exploitation of these species has been limited so far. In this paper, we employed the reference genome sequences from cultivated potato and tomato and a collection of sequences of 1,423 potato Diversity Arrays Technology (DArT) markers that show polymorphic representation across the genomes of S. bulbocastanum and/or S. commersonii genotypes. Our results highlighted microscale genome sequence heterogeneity that may play a significant role in functional and structural divergence between related species. Our analytical approach provides knowledge of genome structural and sequence variability that could not be detected by transcriptome and proteome approaches.

Genomic research and data-mining technology: implications for personal privacy and informed consent.

Science.gov (United States)

Tavani, Herman T

2004-01-01

This essay examines issues involving personal privacy and informed consent that arise at the intersection of information and communication technology (ICT) and population genomics research. I begin by briefly examining the ethical, legal, and social implications (ELSI) program requirements that were established to guide researchers working on the Human Genome Project (HGP). Next I consider a case illustration involving deCODE Genetics, a privately owned genetic company in Iceland, which raises some ethical concerns that are not clearly addressed in the current ELSI guidelines. The deCODE case also illustrates some ways in which an ICT technique known as data mining has both aided and posed special challenges for researchers working in the field of population genomics. On the one hand, data-mining tools have greatly assisted researchers in mapping the human genome and in identifying certain "disease genes" common in specific populations (which, in turn, has accelerated the process of finding cures for diseases tha affect those populations). On the other hand, this technology has significantly threatened the privacy of research subjects participating in population genomics studies, who may, unwittingly, contribute to the construction of new groups (based on arbitrary and non-obvious patterns and statistical correlations) that put those subjects at risk for discrimination and stigmatization. In the final section of this paper I examine some ways in which the use of data mining in the context of population genomics research poses a critical challenge for the principle of informed consent, which traditionally has played a central role in protecting the privacy interests of research subjects participating in epidemiological studies.

Genome Maps, a new generation genome browser.

Science.gov (United States)

Medina, Ignacio; Salavert, Francisco; Sanchez, Rubén; de Maria, Alejandro; Alonso, Roberto; Escobar, Pablo; Bleda, Marta; Dopazo, Joaquín

2013-07-01

Genome browsers have gained importance as more genomes and related genomic information become available. However, the increase of information brought about by new generation sequencing technologies is, at the same time, causing a subtle but continuous decrease in the efficiency of conventional genome browsers. Here, we present Genome Maps, a genome browser that implements an innovative model of data transfer and management. The program uses highly efficient technologies from the new HTML5 standard, such as scalable vector graphics, that optimize workloads at both server and client sides and ensure future scalability. Thus, data management and representation are entirely carried out by the browser, without the need of any Java Applet, Flash or other plug-in technology installation. Relevant biological data on genes, transcripts, exons, regulatory features, single-nucleotide polymorphisms, karyotype and so forth, are imported from web services and are available as tracks. In addition, several DAS servers are already included in Genome Maps. As a novelty, this web-based genome browser allows the local upload of huge genomic data files (e.g. VCF or BAM) that can be dynamically visualized in real time at the client side, thus facilitating the management of medical data affected by privacy restrictions. Finally, Genome Maps can easily be integrated in any web application by including only a few lines of code. Genome Maps is an open source collaborative initiative available in the GitHub repository (https://github.com/compbio-bigdata-viz/genome-maps). Genome Maps is available at: http://www.genomemaps.org.

Behavioral observations of the endangered Rio Grande silvery minnow in a conservation aquaculture facility

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Tave Douglas

2018-03-01

Full Text Available A major reason why conservation aquaculture is needed to improve the success of aquaculture-assisted fisheries is that traditional production aquaculture produces fish with mal-adaptive behaviors. These behaviors can be produced via domestication and culture techniques, and preventing these mal-adaptive behaviors requires integrating improvements in genetic management and culture protocols. The genetic protocols needed to minimize hatchery-induced genetic changes have received considerable attention, but changing the way fish are raised has received less effort. Conservation aquaculture cultures fish in environments that resemble their native habitats so that when stocked, they behave like wild fish rather than hatchery fish. A purpose built-conservation aquaculture facility can also be used to learn about a species’ behavior and how it reacts to changes in the environment, something which can be difficult or expensive to study in the wild. These observations can then be used to help direct both propagation and recovery management. This paper provides the rationale for why genetic management, culture systems, and management practices need to be altered to produce fish that are behaviorally similar to wild fish for aquaculture-assisted fisheries programs. It then provides a description of some of the behaviors of the endangered Rio Grande silvery minnow Hybognathus amarus that were observed at the Los Lunas Silvery Minnow Refugium, a purpose-built conservation aquaculture facility, and explains how some of these behaviors can be used in culture and recovery management. Behaviors described are: schooling; predator avoidance; feeding behavior; use of vegetation for cover and predator avoidance; habitat use by bottom substrate; location in the water column; upstream movement via a fish ladder; movement upstream in a high-velocity channel; response to changes in water level; spawning behavior; seine avoidance; and Kaah-chee-nyee Srkaash, a behavior

Aquaculture and environmental protection

Energy Technology Data Exchange (ETDEWEB)

Leclerc, J

1977-01-01

Aquaculture may end malnutrition; its output will increase from several million tons to more than 60 million ton/yr by the end of the century. A project aimed at developing the culture of mussels and oysters at the Magdalen Islands in the St. Lawrence Gulf is described. Biological and institutional problems, and obstacles to development are discussed. The key idea is to propose forms of cultivation that can occur in complete submersion below the level of the ice. (5 diagrams, 2 maps, 2 photos)

Species selection for smallholder aquaculture

OpenAIRE

Brummett, R.E.

1996-01-01

Systems for selection of species for smallholder aquaculture are presented. These are: food fits; management decisions; and economic criteria. Food fits suggests categorizing pond food resources into a few categories based loosely on the instrinsic traits of food which effect their selectivity by predators. Using management decision techniques, potential polycultures might also be compared with each other and with monoculture. Under economic criteria (and for species known in local markets), ...

Inverness College: Innovations in Aquaculture Training.

Science.gov (United States)

Regional Technology Strategies, Inc., Carrboro, NC.

This paper describes the aquaculture program developed at Inverness College in Scotland. Inverness is located in the Scottish Highlands and serves an area roughly the size of Belgium, but with a population of only 300,000. The regional infrastructure and human capital resources in the Highlands are relatively weak due to inadequate transportation,…

The CRISPR-Cas9 technology: Closer to the ultimate toolkit for targeted genome editing.

Science.gov (United States)

Quétier, Francis

2016-01-01

The first period of plant genome editing was based on Agrobacterium; chemical mutagenesis by EMS (ethyl methanesulfonate) and ionizing radiations; each of these technologies led to randomly distributed genome modifications. The second period is associated with the discoveries of homing and meganuclease enzymes during the 80s and 90s, which were then engineered to provide efficient tools for targeted editing. From 2006 to 2012, a few crop plants were successfully and precisely modified using zinc-finger nucleases. A third wave of improvement in genome editing, which led to a dramatic decrease in off-target events, was achieved in 2009-2011 with the TALEN technology. The latest revolution surfaced in 2013 with the CRISPR-Cas9 system, whose high efficiency and technical ease of use is really impressive; scientists can use in-house kits or commercially available kits; the only two requirements are to carefully choose the location of the DNA double strand breaks to be induced and then to order an oligonucleotide. While this close-to- ultimate toolkit for targeted editing of genomes represents dramatic scientific progress which allows the development of more complex useful agronomic traits through synthetic biology, the social acceptance of genome editing remains regularly questioned by anti-GMO citizens and organizations. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

SCK-CEN Genomic Platform: the microarray technology

International Nuclear Information System (INIS)

Benotmane, R.

2006-01-01

The human body contains approximately 10 14 cells, wherein each one is a nucleus. The nucleus contains 2x23 chromosomes, or two complete sets of the human genome, one set coming from the mother and the other from the father. In principle each set includes 30.000-40.000 genes. If the genome was a book, it would be twenty-three chapters, called chromosomes,each chapter with several thousand stories, called genes. Each story made up of paragraphs, called exons and introns. Each paragraph made up of 3 letter words, called codons. Each word is written with letters called bases (AGCT). But the whole is written in a single very long sentence, which is the DNA molecule or deoxy nucleic acid. The usual state of DNA is two complementary strands intertwined forming a double helix. In the cell, DNA is duplicated during each cell division to ensure the transmission of the genome to the daughter cells. For expression, the DNA is transcribed to messenger RNA. The RNA is edited and finally translated to a protein, each three bases coding for one amino acid. When the whole message is translated, the chain of amino acids folds itself up into a distinctive shape that depends on its sequence. Proteins are the effectors of the genes, and are responsible for all metabolic, hormonal and enzymatic reactions in the cells. The expressed RNA determines the amount of proteins to be produced and subsequently the desired effect (strong or weak) in the cell. The microarray technology aims at quantifying the amount of RNA present in the cell from each expressed gene, and at evaluating the changes of these amounts after exposure of the cell to toxic chemicals, ionising radiation or other stress components. The global picture of expressed genes helps to understand the affected genetic pathways in the cell at the molecular level. The microarray technology is used in the Radiobiology and Microbiology topics to study the effect of ionising radiation on human cells and mouse tissue, as well as the

Criteria for candidate species for aquaculture

Energy Technology Data Exchange (ETDEWEB)

Webber, H H; Riordan, P F

1976-01-01

The nature of the animal taxa that are the most probable candidates for an intensive, commercial aquatic animal husbandry industry is considered. A characterization is presented of those biological criteria that lend the species the necessary physiological and genetic malleability to be adapted and molded into a domesticated race. The animal cultivated must be amenable to intensive management in high-density confinements such as those now being engineered for high-yield aquaculture. Attributes considered are discussed in the context of the various aquacultural ecosystems in which the specific biotype is expected to achieve satisfactory growth and survival. Correlative with bionomic criteria, economic requirements are posed and evaluated in an effort to define a socially and financially profitable agribusiness system. Investment requirements and operating costs are considered in terms of expected returns. However, since production alone is insufficient to sustain an enterprise - i.e., the product must be sold - production costs must be judged against market values. Therefore, ultimate use or consumer acceptance criteria are incorporated into the list of essential requirements for a candidate species for aquafarming.

Purification Performance and Production of a Re-circulating Pond Aquaculture System Based on Paddy Field

OpenAIRE

Gu Li; Shi-yang Zhang; Ling Tao; Xiao-li Li; Jing-hua Song; Chun-xue Zhang; Jian-qiang Zhu

2012-01-01

Developing improved aquaculture systems with a more efficient use of water and less environmental impact is becoming a crying need. A re-circulating aquaculture system consisting of paddy field and fish pond is a new culture mode due to aquaculture combing with agriculture. The present study focused on the purification capacity of the paddy field on nitrogen, phosphorus and organic matter, the fluctuation trend of water quality conditions during the whole rearing process and the culture effic...

Sequencing of chloroplast genome using whole cellular DNA and Solexa sequencing technology

Directory of Open Access Journals (Sweden)

Jian eWu

2012-11-01

Full Text Available Sequencing of the chloroplast genome using traditional sequencing methods has been difficult because of its size (>120 kb and the complicated procedures required to prepare templates. To explore the feasibility of sequencing the chloroplast genome using DNA extracted from whole cells and Solexa sequencing technology, we sequenced whole cellular DNA isolated from leaves of three Brassica rapa accessions with one lane per accession. In total, 246 Mb, 362Mb, 361 Mb sequence data were generated for the three accessions Chiifu-401-42, Z16 and FT, respectively. Microreads were assembled by reference-guided assembly using the cpDNA sequences of B. rapa, Arabidopsis thaliana, and Nicotiana tabacum. We achieved coverage of more than 99.96% of the cp genome in the three tested accessions using the B. rapa sequence as the reference. When A. thaliana or N. tabacum sequences were used as references, 99.7–99.8% or 95.5–99.7% of the B. rapa chloroplast genome was covered, respectively. These results demonstrated that sequencing of whole cellular DNA isolated from young leaves using the Illumina Genome Analyzer is an efficient method for high-throughput sequencing of chloroplast genome.

Feed conversion efficiency in aquaculture: do we measure it correctly?

Science.gov (United States)

Fry, Jillian P.; Mailloux, Nicholas A.; Love, David C.; Milli, Michael C.; Cao, Ling

2018-02-01

Globally, demand for food animal products is rising. At the same time, we face mounting, related pressures including limited natural resources, negative environmental externalities, climate disruption, and population growth. Governments and other stakeholders are seeking strategies to boost food production efficiency and food system resiliency, and aquaculture (farmed seafood) is commonly viewed as having a major role in improving global food security based on longstanding measures of animal production efficiency. The most widely used measurement is called the ‘feed conversion ratio’ (FCR), which is the weight of feed administered over the lifetime of an animal divided by weight gained. By this measure, fed aquaculture and chickens are similarly efficient at converting feed into animal biomass, and both are more efficient compared to pigs and cattle. FCR does not account for differences in feed content, edible portion of an animal, or nutritional quality of the final product. Given these limitations, we searched the literature for alternative efficiency measures and identified ‘nutrient retention’, which can be used to compare protein and calories in feed (inputs) and edible portions of animals (outputs). Protein and calorie retention have not been calculated for most aquaculture species. Focusing on commercial production, we collected data on feed composition, feed conversion ratios, edible portions (i.e. yield), and nutritional content of edible flesh for nine aquatic and three terrestrial farmed animal species. We estimate that 19% of protein and 10% of calories in feed for aquatic species are ultimately made available in the human food supply, with significant variation between species. Comparing all terrestrial and aquatic animals in the study, chickens are most efficient using these measures, followed by Atlantic salmon. Despite lower FCRs in aquaculture, protein and calorie retention for aquaculture production is comparable to livestock production

Bivalve aquaculture-environment interactions in the context of climate change.

Science.gov (United States)

Filgueira, Ramón; Guyondet, Thomas; Comeau, Luc A; Tremblay, Réjean

2016-12-01

Coastal embayments are at risk of impacts by climate change drivers such as ocean warming, sea level rise and alteration in precipitation regimes. The response of the ecosystem to these drivers is highly dependent on their magnitude of change, but also on physical characteristics such as bay morphology and river discharge, which play key roles in water residence time and hence estuarine functioning. These considerations are especially relevant for bivalve aquaculture sites, where the cultured biomass can alter ecosystem dynamics. The combination of climate change, physical and aquaculture drivers can result in synergistic/antagonistic and nonlinear processes. A spatially explicit model was constructed to explore effects of the physical environment (bay geomorphic type, freshwater inputs), climate change drivers (sea level, temperature, precipitation) and aquaculture (bivalve species, stock) on ecosystem functioning. A factorial design led to 336 scenarios (48 hydrodynamic × 7 management). Model outcomes suggest that the physical environment controls estuarine functioning given its influence on primary productivity (bottom-up control dominated by riverine nutrients) and horizontal advection with the open ocean (dominated by bay geomorphic type). The intensity of bivalve aquaculture ultimately determines the bivalve-phytoplankton trophic interaction, which can range from a bottom-up control triggered by ammonia excretion to a top-down control via feeding. Results also suggest that temperature is the strongest climate change driver due to its influence on the metabolism of poikilothermic organisms (e.g. zooplankton and bivalves), which ultimately causes a concomitant increase of top-down pressure on phytoplankton. Given the different thermal tolerance of cultured species, temperature is also critical to sort winners from losers, benefiting Crassostrea virginica over Mytilus edulis under the specific conditions tested in this numerical exercise. In general, it is

BIOTECHNOLOGY OF THE FISH AQUACULTURE

Directory of Open Access Journals (Sweden)

L. P. Buchatsky

2013-12-01

Full Text Available The latest progress in biotechnology on fish aquaculture and different modern methods of investigations for increasing of fish productivity in aquaculture are analyzed. Except for the applied aspect, the use of modern biotechnological methods of investigations opens new possibilities for fundamental researches of sex-determining mechanisms, polyploidy, distant hybridization, and developmental biology of bony fishes. Review contains examples of utilizing modern biotechnology methods to obtain transgenic fishes with accelerated growth and for designing surrogate fishes. Methods for receiving unisexual shoals of salmon and sturgeon female fishes with the view of obtaining a large quantity of caviar, as well as receiving sterile (triploid fishes are analyzed. Great attention is given to androgenesis, particularly to disperm one, in connection with the problem of conserving rare and vanishing fish species using only sperm genetic material. Examples how distant hybrids may be obtained with the use of disperm androgenesis and alkylated DNA are given. Methods of obtaining fish primordium germ cells, recent developments in cultivation of fish stem cells and their use in biotechnology, as well as ones of transplantation of oogonium and spermatogonium to obtain surrogate fishes. The examples of successful experiments on spermatogonial xenotransplantation and characteristic of antifreezing fish proteins and also the prospect of their practical usage are given.

Influence of carbohydrate addition on nitrogen transformations and greenhouse gas emissions of intensive aquaculture system.

Science.gov (United States)

Hu, Zhen; Lee, Jae Woo; Chandran, Kartik; Kim, Sungpyo; Sharma, Keshab; Khanal, Samir Kumar

2014-02-01

Aquaculture is one of the fastest-growing segments of the food economy in modern times. It is also being considered as an important source of greenhouse gas (GHG) emissions. To date, limited studies have been conducted on GHG emissions from aquaculture system. In this study, daily addition of fish feed and soluble starch at a carbon-to-nitrogen (C/N) ratio of 16:1 (w/w) was used to examine the effects of carbohydrate addition on nitrogen transformations and GHG emissions in a zero-water exchange intensive aquaculture system. The addition of soluble starch stimulated heterotrophic bacterial growth and denitrification, which led to lower total ammonia nitrogen, nitrite and nitrate concentrations in aqueous phase. About 76.2% of the nitrogen output was emitted in the form of gaseous nitrogen (i.e., N2 and N2O) in the treatment tank (i.e., aquaculture tank with soluble starch addition), while gaseous nitrogen accounted for 33.3% of the nitrogen output in the control tank (i.e., aquaculture tank without soluble starch addition). Although soluble starch addition reduced daily N2O emissions by 83.4%, it resulted in an increase of daily carbon dioxide (CO2) emissions by 91.1%. Overall, starch addition did not contribute to controlling the GHG emissions from the aquaculture system. © 2013.

Tracing dissolved organic matter (DOM) from land-based aquaculture systems in North Patagonian streams

DEFF Research Database (Denmark)

Nimptsch, Jorge; Woelfl, Stefan; Osorio, Sebastian

2015-01-01

Chile is the second largest producer of salmonids worldwide. The first step in the production of salmonids takes place in land-based aquacultures. However, the effects of the discharge from these aquacultures on stream dissolved organic matter (DOM) content, molecular composition and degradabilit...

Impact of selective breeding on European aquaculture

NARCIS (Netherlands)

Janssen, K.; Chavanne, H.; Berentsen, P.; Komen, H.

2017-01-01

Objectives of this study were to determine the combined market share of breeding companies in aquaculture production in Europe, to describe the main characteristics of breeding companies and their programs, and to provide per species estimates on cumulative genetic gain in growth performance.

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis.

Directory of Open Access Journals (Sweden)

Maria Murgarella

Full Text Available Mussels belong to the phylum Mollusca, one of the largest and most diverse taxa in the animal kingdom. Despite their importance in aquaculture and in biology in general, genomic resources from mussels are still scarce. To broaden and increase the genomic knowledge in this family, we carried out a whole-genome sequencing study of the cosmopolitan Mediterranean mussel (Mytilus galloprovincialis. We sequenced its genome (32X depth of coverage on the Illumina platform using three pair-end libraries with different insert sizes. The large number of contigs obtained pointed out a highly complex genome of 1.6 Gb where repeated elements seem to be widespread (~30% of the genome, a feature that is also shared with other marine molluscs. Notwithstanding the limitations of our genome sequencing, we were able to reconstruct two mitochondrial genomes and predict 10,891 putative genes. A comparative analysis with other molluscs revealed a gene enrichment of gene ontology categories related to multixenobiotic resistance, glutamate biosynthetic process, and the maintenance of ciliary structures.

A GIS-based tool for an integrated assessment of spatial planning trade-offs with aquaculture.

Science.gov (United States)

Gimpel, Antje; Stelzenmüller, Vanessa; Töpsch, Sandra; Galparsoro, Ibon; Gubbins, Matthew; Miller, David; Murillas, Arantza; Murray, Alexander G; Pınarbaşı, Kemal; Roca, Guillem; Watret, Robert

2018-06-15

The increasing demand for protein from aquaculture will trigger a global expansion of the sector in coastal and offshore waters. While contributing to food security, potential conflicts with other traditional activities such as fisheries or tourism are inevitable, thus calling for decision-support tools to assess aquaculture planning scenarios in a multi-use context. Here we introduce the AquaSpace tool, one of the first Geographic Information System (GIS)-based planning tools empowering an integrated assessment and mapping of 30 indicators reflecting economic, environmental, inter-sectorial and socio-cultural risks and opportunities for proposed aquaculture systems in a marine environment. A bottom-up process consulting more than 350 stakeholders from 10 countries across southern and northern Europe enabled the direct consideration of stakeholder needs when developing the GIS AddIn. The AquaSpace tool is an open source product and builds in the prospective use of open source datasets at a European scale, hence aiming to improve reproducibility and collaboration in aquaculture science and research. Tool outputs comprise detailed reports and graphics allowing key stakeholders such as planners or licensing authorities to evaluate and communicate alternative planning scenarios and to take more informed decisions. With the help of the German North Sea case study we demonstrate here the tool application at multiple spatial scales with different aquaculture systems and under a range of space-related development constraints. The computation of these aquaculture planning scenarios and the assessment of their trade-offs showed that it is entirely possible to identify aquaculture sites, that correspondent to multifarious potential challenges, for instance by a low conflict potential, a low risk of disease spread, a comparable high economic profit and a low impact on touristic attractions. We believe that a transparent visualisation of risks and opportunities of aquaculture

A high-density Diversity Arrays Technology (DArT microarray for genome-wide genotyping in Eucalyptus

Directory of Open Access Journals (Sweden)

Myburg Alexander A

2010-06-01

Full Text Available Abstract Background A number of molecular marker technologies have allowed important advances in the understanding of the genetics and evolution of Eucalyptus, a genus that includes over 700 species, some of which are used worldwide in plantation forestry. Nevertheless, the average marker density achieved with current technologies remains at the level of a few hundred markers per population. Furthermore, the transferability of markers produced with most existing technology across species and pedigrees is usually very limited. High throughput, combined with wide genome coverage and high transferability are necessary to increase the resolution, speed and utility of molecular marker technology in eucalypts. We report the development of a high-density DArT genome profiling resource and demonstrate its potential for genome-wide diversity analysis and linkage mapping in several species of Eucalyptus. Findings After testing several genome complexity reduction methods we identified the PstI/TaqI method as the most effective for Eucalyptus and developed 18 genomic libraries from PstI/TaqI representations of 64 different Eucalyptus species. A total of 23,808 cloned DNA fragments were screened and 13,300 (56% were found to be polymorphic among 284 individuals. After a redundancy analysis, 6,528 markers were selected for the operational array and these were supplemented with 1,152 additional clones taken from a library made from the E. grandis tree whose genome has been sequenced. Performance validation for diversity studies revealed 4,752 polymorphic markers among 174 individuals. Additionally, 5,013 markers showed segregation when screened using six inter-specific mapping pedigrees, with an average of 2,211 polymorphic markers per pedigree and a minimum of 859 polymorphic markers that were shared between any two pedigrees. Conclusions This operational DArT array will deliver 1,000-2,000 polymorphic markers for linkage mapping in most eucalypt pedigrees

A Layman's Guide to Geothermal Aquaculture

Energy Technology Data Exchange (ETDEWEB)

Smith, Kenan C

1981-01-01

The following paper is designed as an aid to anyone contemplating a venture into commercially raising giant freshwater prawns, Macrobrachium rosenbergii. Oregon Institute of Technology has been actively involved in a research program to determine the feasibility of such a venture and results to date have been very encouraging. This aquaculture research was initiated in 1975 and was developed as an effort to utilize excess energy from the school’s geothermal heating system. Therefore, most of the information gathered here, will apply to flow-through systems which use geothermal water to maintain a suitable environment for the animals. A study of the market potential for freshwater prawns has been conducted and a favorable response received from wholesale distributors in the Pacific Northwest. Not only is a good market available, but distributors have suggested paying from $4.50 to $5.00 per pound for whole prawns in the size category of 16 to 20 tails to the pound, for a constant fresh supply. By maintaining constant temperatures of 27 degrees Celsius (80 degrees Fahrenheit) ± 1 degree Celsius in our research ponds, we have been able to produce this size prawn in 6 to 8 months.

Interactions of aquaculture, marine coastal ecosystems, and near-shore waters: A bibliography. Bibliographies and literature of agriculture (Final)

International Nuclear Information System (INIS)

Hanfman, D.T.; Coleman, D.E.; Tibbitt, S.J.

1991-01-01

The bibliography contains selected literature citations on the interactions of aquaculture and marine coastal ecosystems. The focus is on aquaculture effluents and their impact on marine coastal ecosystems and waterways as well as the impact of pollutants on aquaculture development. Factors affecting these issues include domestic and industrial wastes, thermal discharges, acid rain, heavy metals, oil spills, and microbial contamination of marine waters and aquatic species. Coastal zone management, environmenal impact of aquaculture, and water quality issues are also included in the bibliography

[Microbial community in nitrogen cycle of aquaculture water of the Pearl River Delta].

Science.gov (United States)

Cai, Xiaolong; Luo, Jianfei; Lin, Weitie; Tian, Guoliang

2012-05-04

In order to study the characteristic of nitrogen transport, the community structure and diversity of related microorganisms in aquaculture water of the Pearl River Delta. We established an artificial aquaculture ecosystem to study the microbial community of 15N-stable isotope probing (15N-SIP) labeled nitrogen transport microorganisms. The 15N-labeled DNA was separated by CsCl-ethidium bromide density gradient centrifugation, and was used to construct 16S rRNA gene clone libraries of bacteria and archaea. Phylogenetic analysis shows that 19 Operational Taxonomic Units (OTUs) from bacterial library were clustered in Proteobacteria and Planctomycetes. Proteobacteria (99.2%) was the dominant group, mainly consisted of Comamonas (15.7%), Nitrosomonas (12.4%), Enterobacteriaceae (11.5%) and Nitrobacter (11.5%). From archaeal library 9 OTUs were divided into 3 phyla: Thaumarchaeota, Crenarchaeota and Euryarchaeota. We successfully elucidated the microbial community of nitrogen transport microorganisms in aquaculture water of Pearl River Delta by using 15N-SIP. The data of the community will provide essential information for isolating nitrogen degrading microorganism, and provide scientific basis for creating a healthy aquaculture environment.

An agro-ecological evaluation of aquaculture integration into farming systems of the Mekong Delta

NARCIS (Netherlands)

Phong, L.T.; Dam, van A.A.; Udo, H.M.J.; Mensvoort, van M.E.F.; Tri, L.Q.; Steenstra, F.A.; Zijpp, van der A.J.

2010-01-01

This study compared ecological sustainability of Integrated Agriculture-Aquaculture (IAA) systems with different forms and intensity of aquaculture integration in the Mekong Delta of Vietnam: orchard-based and low-input fish (O-LF); rice-based and medium-input fish (R-MF); and rice-based and

Strategies for use of reproductive technologies in genomic dairy cattle breeding programs

DEFF Research Database (Denmark)

Thomasen, Jørn Rind; Sørensen, Anders Christian

A simulation study was performed for testing the effect of using reproductive technologies in a genomic dairy cattle young bull breeding scheme. The breeding scheme parameters: 1) number of donors, 2) number of progeny per donor, 3) age of the donor, 4) number of sires, and 5) reliability...... of genomic breeding values. The breeding schemes were evaluated according to genetic gain and rate of inbreeding. The relative gain by use of reproductive technologies is 11 to 84 percent points depending on the choice of other breeding scheme parameters. A large donor program with high selection intensity...... of sires provides the highest genetic gain. A relatively higher genetic gain is obtained for higher reliability of GEBV. Extending the donor program and number of selected bulls has a major effect of reducing the rate of inbreeding without compromising genetic gain....

The influence of socio cultural dynamics on convergence communication of aquaculture agribusiness actors

Science.gov (United States)

Oktavia, Y.

2018-03-01

This research aims to: (1) Analyze the level of socio-cultural dynamics of agibusiness aquaculture actors. (2) Analyze the influence of socio-cultural dynamics on convergence communication of capacity development of aquaculture agribusiness actors.Data was collected by questionnaire and interview of group members on agribusiness. Data analyze was done by descriptive and inferential statistics with using SEM method. The result of descriptive statistics on 284 agribusiness members showed that: Socio-cultural dynamics of agibusiness aquaculture actors was in low category, as shown by lack of the role of customary institutions and quality of local leadership.The communication convergence is significantly and positively influenced by the communication behavior of agribusiness actors in access information.

Rose Canyon Sustainable Aquaculture Project, San Diego, CA

Science.gov (United States)

Documents related to EPA's preparation of an Environmental Assessment (EA) to analyze the potential impacts related to the issuance of a National Pollutant Discharge Elimination System (NPDES) permit for the Rose Canyon Sustainable Aquaculture Project.

A Review - Biology, Aquaculture and Medical Use of Seahorse, Hippocampus spp

OpenAIRE

Yuan Yuan Zhang; Bo-Mi Ryu; Zhong-Ji Qian

2017-01-01

Seahorse has been used as medicine in Asian countries such as China, Korea, Japan and Vietnam for thousands of years. However, in western countries, the ecology of seahorse has been a focus of attention of many researchers for years. The seahorse aquaculture is popular with aqua farm worldwide for the sake of the increased demand of seahorse. This review described the biology, aquaculture and medical use of seahorse. To present the ecology and highlight the role of seahorse in traditional med...

Organic matter decomposition in simulated aquaculture ponds

NARCIS (Netherlands)

Torres Beristain, B.

2005-01-01

Different kinds of organic and inorganic compounds (e.g. formulated food, manures, fertilizers) are added to aquaculture ponds to increase fish production. However, a large part of these inputs are not utilized by the fish and are decomposed inside the pond. The microbiological decomposition of the

Production of cobia in recirculating aquaculture systems

Science.gov (United States)

Interest in cobia Rachycentron canadum aquaculture in the US has increased greatly in the last decade due to their excellent consumer appeal, extremely rapid growth rates, and the observed success of rearing this species in Taiwan and other southeastern Asian countries. Because most cobia are grown...

Oenococcus oeni in Chilean Red Wines: Technological and Genomic Characterization

Directory of Open Access Journals (Sweden)

Jaime Romero

2018-02-01

Full Text Available The presence and load of species of LAB at the end of the malolactic fermentation (MLF were investigated in 16 wineries from the different Chilean valleys (Limarí, Casablanca, Maipo, Rapel, and Maule Valleys during 2012 and 2013, using PCR-RFLP and qPCR. Oenococcus oeni was observed in 80% of the samples collected. Dominance of O. oeni was reflected in the bacterial load (O. oeni/total bacteria measured by qPCR, corresponding to >85% in most of the samples. A total of 178 LAB isolates were identified after sequencing molecular markers, 95 of them corresponded to O. oeni. Further genetic analyses were performed using MLST (7 genes including 10 commercial strains; the results indicated that commercial strains were grouped together, while autochthonous strains distributed among different genetic clusters. To pre-select some autochthonous O. oeni, these isolates were also characterized based on technological tests such as ethanol tolerance (12 and 15%, SO2 resistance (0 and 80 mg l−1, and pH (3.1 and 3.6 and malic acid transformation (1.5 and 4 g l−1. For comparison purposes, commercial strain VP41 was also tested. Based on their technological performance, only 3 isolates were selected for further examination (genome analysis and they were able to reduce malic acid concentration, to grow at low pH 3.1, 15% ethanol and 80 mg l−1 SO2. The genome analyses of three selected isolates were examined and compared to PSU-1 and VP41 strains to study their potential contribution to the organoleptic properties of the final product. The presence and homology of genes potentially related to aromatic profile were compared among those strains. The results indicated high conservation of malolactic enzyme (>99% and the absence of some genes related to odor such as phenolic acid decarboxylase, in autochthonous strains. Genomic analysis also revealed that these strains shared 470 genes with VP41 and PSU-1 and that autochthonous strains harbor an interesting

Evaluation of Pacific white shrimp (Litopenaeus vannamei health during a superintensive aquaculture growout using NMR-based metabolomics.

Directory of Open Access Journals (Sweden)

Tracey B Schock

Full Text Available Success of the shrimp aquaculture industry requires technological advances that increase production and environmental sustainability. Indoor, superintensive, aquaculture systems are being developed that permit year-round production of farmed shrimp at high densities. These systems are intended to overcome problems of disease susceptibility and of water quality issues from waste products, by operating as essentially closed systems that promote beneficial microbial communities (biofloc. The resulting biofloc can assimilate and detoxify wastes, may provide nutrition for the farmed organisms resulting in improved growth, and may aid in reducing disease initiated from external sources. Nuclear magnetic resonance (NMR-based metabolomic techniques were used to assess shrimp health during a full growout cycle from the nursery phase through harvest in a minimal-exchange, superintensive, biofloc system. Aberrant shrimp metabolomes were detected from a spike in total ammonia nitrogen in the nursery, from a reduced feeding period that was a consequence of surface scum build-up in the raceway, and from the stocking transition from the nursery to the growout raceway. The biochemical changes in the shrimp that were induced by the stressors were essential for survival and included nitrogen detoxification and energy conservation mechanisms. Inosine and trehalose may be general biomarkers of stress in Litopenaeus vannamei. This study demonstrates one aspect of the practicality of using NMR-based metabolomics to enhance the aquaculture industry by providing physiological insight into common environmental stresses that may limit growth or better explain reduced survival and production.

Evaluation of Pacific White Shrimp (Litopenaeus vannamei) Health during a Superintensive Aquaculture Growout Using NMR-Based Metabolomics

Science.gov (United States)

Schock, Tracey B.; Duke, Jessica; Goodson, Abby; Weldon, Daryl; Brunson, Jeff; Leffler, John W.; Bearden, Daniel W.

2013-01-01

Success of the shrimp aquaculture industry requires technological advances that increase production and environmental sustainability. Indoor, superintensive, aquaculture systems are being developed that permit year-round production of farmed shrimp at high densities. These systems are intended to overcome problems of disease susceptibility and of water quality issues from waste products, by operating as essentially closed systems that promote beneficial microbial communities (biofloc). The resulting biofloc can assimilate and detoxify wastes, may provide nutrition for the farmed organisms resulting in improved growth, and may aid in reducing disease initiated from external sources. Nuclear magnetic resonance (NMR)-based metabolomic techniques were used to assess shrimp health during a full growout cycle from the nursery phase through harvest in a minimal-exchange, superintensive, biofloc system. Aberrant shrimp metabolomes were detected from a spike in total ammonia nitrogen in the nursery, from a reduced feeding period that was a consequence of surface scum build-up in the raceway, and from the stocking transition from the nursery to the growout raceway. The biochemical changes in the shrimp that were induced by the stressors were essential for survival and included nitrogen detoxification and energy conservation mechanisms. Inosine and trehalose may be general biomarkers of stress in Litopenaeus vannamei. This study demonstrates one aspect of the practicality of using NMR-based metabolomics to enhance the aquaculture industry by providing physiological insight into common environmental stresses that may limit growth or better explain reduced survival and production. PMID:23555690

Exploring attitudes towards aquaculture development in the UK: A consultative stakeholder approach

OpenAIRE

Memery, Juliet; Birch, Dawn

2016-01-01

This study explores attitudes towards aquaculture development as a way of providing a sustainable source of seafood through a consultative stakeholder approach. Given aquaculture is a less familiar concept within South West England, gaining insight of the views and perspectives of such a development in the region is required to facilitate stakeholder engagement. In-depth qualitative interviews investigate attitudes across five stakeholder sectors: government, fishing/marine, business/catering...

Use of planted biofilters in integrated recirculating aquaculture-hydroponics systems in the Mekong Delta, Vietnam

DEFF Research Database (Denmark)

Trang, N.T.D.; Brix, Hans

2014-01-01

The feasibility of using planted biofilters for purification of recirculated aquaculture water in the Mekong Delta of Vietnam was assessed. The plant trenches were able to clean tilapia aquaculture water and to maintain good water quality in the fish tanks without renewal of the water. NH4-N was ...... rates of 725 kg N and 234 kg P ha-1 year-1. This research demonstrates that integrated recirculating aquaculture-hydroponics (aquaponics) systems provide significant water savings and nutrient recycling as compared with traditional fish ponds....

Genomics technologies to study structural variations in the grapevine genome

Directory of Open Access Journals (Sweden)

Cardone Maria Francesca

2016-01-01

Full Text Available Grapevine is one of the most important crop plants in the world. Recently there was great expansion of genomics resources about grapevine genome, thus providing increasing efforts for molecular breeding. Current cultivars display a great level of inter-specific differentiation that needs to be investigated to reach a comprehensive understanding of the genetic basis of phenotypic differences, and to find responsible genes selected by cross breeding programs. While there have been significant advances in resolving the pattern and nature of single nucleotide polymorphisms (SNPs on plant genomes, few data are available on copy number variation (CNV. Furthermore association between structural variations and phenotypes has been described in only a few cases. We combined high throughput biotechnologies and bioinformatics tools, to reveal the first inter-varietal atlas of structural variation (SV for the grapevine genome. We sequenced and compared four table grape cultivars with the Pinot noir inbred line PN40024 genome as the reference. We detected roughly 8% of the grapevine genome affected by genomic variations. Taken into account phenotypic differences existing among the studied varieties we performed comparison of SVs among them and the reference and next we performed an in-depth analysis of gene content of polymorphic regions. This allowed us to identify genes showing differences in copy number as putative functional candidates for important traits in grapevine cultivation.

Patient-controlled encrypted genomic data: an approach to advance clinical genomics

Directory of Open Access Journals (Sweden)

Trakadis Yannis J

2012-07-01

Full Text Available Abstract Background The revolution in DNA sequencing technologies over the past decade has made it feasible to sequence an individual’s whole genome at a relatively low cost. The potential value of the information generated by genomic technologies for medicine and society is enormous. However, in order for exome sequencing, and eventually whole genome sequencing, to be implemented clinically, a number of major challenges need to be overcome. For instance, obtaining meaningful informed-consent, managing incidental findings and the great volume of data generated (including multiple findings with uncertain clinical significance, re-interpreting the genomic data and providing additional counselling to patients as genetic knowledge evolves are issues that need to be addressed. It appears that medical genetics is shifting from the present “phenotype-first” medical model to a “data-first” model which leads to multiple complexities. Discussion This manuscript discusses the different challenges associated with integrating genomic technologies into clinical practice and describes a “phenotype-first” approach, namely, “Individualized Mutation-weighed Phenotype Search”, and its benefits. The proposed approach allows for a more efficient prioritization of the genes to be tested in a clinical lab based on both the patient’s phenotype and his/her entire genomic data. It simplifies “informed-consent” for clinical use of genomic technologies and helps to protect the patient’s autonomy and privacy. Overall, this approach could potentially render widespread use of genomic technologies, in the immediate future, practical, ethical and clinically useful. Summary The “Individualized Mutation-weighed Phenotype Search” approach allows for an incremental integration of genomic technologies into clinical practice. It ensures that we do not over-medicalize genomic data but, rather, continue our current medical model which is based on serving

Scaling-up Sustainable Aquaculture Development in Sri Lanka ...

International Development Research Centre (IDRC) Digital Library (Canada)

... of Sri Lanka is increasingly emphasizing aquaculture development as a means to foster ... Pilot interventions tested the effectiveness of mobile short text messaging to ... Building on this project, researchers will test three ways of scaling-up ...

RESEARCHES REGARDING THE TECHNOLOGICAL PERFORMANCES OF CARP REARING DURING WINTER PERIOD IN THE CONDITIONS OF A RECIRCULATING AQUACULTURE SYSTEM

Directory of Open Access Journals (Sweden)

G. STEFAN

2008-10-01

Full Text Available The techniques of carp culture are highly diversified, ranging from the extensive production in pond or open water with no fertilization or supplemental feeding to highly intensive systems in concrete tanks or cages. Among the different carp species, common carp is the best species reared in intensive monoculture, the others (Chinese and Indian carps being usually cultivated in polyculture (P. Kestemont, 1995. An experiment was conducted in inside recirculation system conditions to identify the technological performances on carp growth and survival at the Fishing and Aquaculture Department, Galati, during winter period (February, 2007 – March, 2007. The 1-year-old carp (Cyprinus carpio 4792g; 4594 g; 4561 g and 4525 g (total weight grew to 7384g; 7017g; 6924g and 7125 g in 44 days in aquarium 1, 2, 3 and 4, respectively. In all aquariums, the fish appeared healthy and no mortality was observed. Feed conversion efficiencies (FCE had similar values among all aquariums, the highest FCE being found in B4 aquarium with 1, 57 value. Water quality parameters were acceptable range for fish culture. Results show that the carp rearing during winter period in the inside recirculation system is a very good economic solution.

Responsible aquaculture in 2050: Valuing local conditions and human innovations will be key to success

NARCIS (Netherlands)

Diana, J.S.; Egna, H.S.; Chopin, T.; Peterson, M.S.; Cao, L.; Pomeroy, R.; Verdegem, M.C.J.; Slack, W.T.; Bondad-Reantaso, M.G.; Cabello, F.

2013-01-01

As aquaculture production expands, we must avoid mistakes made during increasing intensification of agriculture. Understanding environmental impacts and measures to mitigate them is important for designing responsible aquaculture production systems. There are four realistic goals that can make

Fish farmers' perceptions of constraints affecting aquaculture ...

African Journals Online (AJOL)

The study focused on fish farmers' perceptions of constraints affecting aquaculture development in Akwa-Ibom State of Nigeria. Random sampling procedure was used to select 120 respondents from whom primary data was collected. Data analysis was with the aid of descriptive statistics. Results show that fish farming ...

How can plant genetic engineering contribute to cost-effective fish vaccine development for promoting sustainable aquaculture?

Science.gov (United States)

Clarke, Jihong Liu; Waheed, Mohammad Tahir; Lössl, Andreas G; Martinussen, Inger; Daniell, Henry

2013-09-01

Aquaculture, the fastest growing food-producing sector, now accounts for nearly 50 % of the world's food fish (FAO in The state of world fisheries and aquaculture. FAO, Rome, 2010). The global aquaculture production of food fish reached 62.7 million tonnes in 2011 and is continuously increasing with an estimated production of food fish of 66.5 million tonnes in 2012 (a 9.4 % increase in 1 year, FAO, www.fao.org/fishery/topic/16140 ). Aquaculture is not only important for sustainable protein-based food fish production but also for the aquaculture industry and economy worldwide. Disease prevention is the key issue to maintain a sustainable development of aquaculture. Widespread use of antibiotics in aquaculture has led to the development of antibiotic-resistant bacteria and the accumulation of antibiotics in the environment, resulting in water and soil pollution. Thus, vaccination is the most effective and environmentally-friendly approach to combat diseases in aquaculture to manage fish health. Furthermore, when compared to >760 vaccines against human diseases, there are only about 30 fish vaccines commercially available, suggesting the urgent need for development and cost-effective production of fish vaccines for managing fish health, especially in the fast growing fish farming in Asia where profit is minimal and therefore given high priority. Plant genetic engineering has made significant contributions to production of biotech crops for food, feed, valuable recombinant proteins etc. in the past three decades. The use of plants for vaccine production offers several advantages such as low cost, safety and easy scaling up. To date a large number of plant-derived vaccines, antibodies and therapeutic proteins have been produced for human health, of which a few have been made commercially available. However, the development of animal vaccines in plants, especially fish vaccines by genetic engineering, has not yet been addressed. Therefore, there is a need to exploit

Use of chemicals in aquaculture - issues of concern

Digital Repository Service at National Institute of Oceanography (India)

Zingde, M.D.

Majority of aquaculture practices are still based on extensive and semi-intensive farming systems though a trend to intensify operations to enhance yields and improve the efficiency of the production process has emerged in recent years. Apart from...

Genome-environment interactions and prospective technology assessment: evolution from pharmacogenomics to nutrigenomics and ecogenomics.

Science.gov (United States)

Ozdemir, Vural; Motulsky, Arno G; Kolker, Eugene; Godard, Béatrice

2009-02-01

The relationships between food, nutrition science, and health outcomes have been mapped over the past century. Genomic variation among individuals and populations is a new factor that enriches and challenges our understanding of these complex relationships. Hence, the confluence of nutritional science and genomics-nutrigenomics--was the focus of the OMICS: A Journal of Integrative Biology in December 2008 (Part 1). The 2009 Special Issue (Part 2) concludes the analysis of nutrigenomics research and innovations. Together, these two issues expand the scope and depth of critical scholarship in nutrigenomics, in keeping with an integrated multidisciplinary analysis across the bioscience, omics technology, social, ethical, intellectual property and policy dimensions. Historically, the field of pharmacogenetics provided the first examples of specifically identifiable gene variants predisposing to unexpected responses to drugs since the 1950s. Brewer coined the term ecogenetics in 1971 to broaden the concept of gene-environment interactions from drugs and nutrition to include environmental agents in general. In the mid-1990s, introduction of high-throughput technologies led to the terms pharmacogenomics, nutrigenomics and ecogenomics to describe, respectively, the contribution of genomic variability to differential responses to drugs, food, and environment defined in the broadest sense. The distinctions, if any, between these newer fields (e.g., nutrigenomics) and their predecessors (e.g., nutrigenetics) remain to be delineated. For nutrigenomics, its reliance on genome-wide analyses may lead to detection of new biological mechanisms governing host response to food. Recognizing "genome-environment interactions" as the conceptual thread that connects and runs through pharmacogenomics, nutrigenomics, and ecogenomics may contribute toward anticipatory governance and prospective real-time analysis of these omics fields. Such real-time analysis of omics technologies and

Methane and Nitrous Oxide Emissions Reduced Following Conversion of Rice Paddies to Inland Crab-Fish Aquaculture in Southeast China.

Science.gov (United States)

Liu, Shuwei; Hu, Zhiqiang; Wu, Shuang; Li, Shuqing; Li, Zhaofu; Zou, Jianwen

2016-01-19

Aquaculture is an important source of atmospheric methane (CH4) and nitrous oxide (N2O), while few direct flux measurements are available for their regional and global source strength estimates. A parallel field experiment was performed to measure annual CH4 and N2O fluxes from rice paddies and rice paddy-converted inland crab-fish aquaculture wetlands in southeast China. Besides N2O fluxes dependent on water/sediment mineral N and CH4 fluxes related to water chemical oxygen demand, both CH4 and N2O fluxes from aquaculture were related to water/sediment temperature, sediment dissolved organic carbon, and water dissolved oxygen concentration. Annual CH4 and N2O fluxes from inland aquaculture averaged 0.37 mg m(-2) h(-1) and 48.1 μg m(-2) h(-1), yielding 32.57 kg ha(-1) and 2.69 kg N2O-N ha(-1), respectively. The conversion of rice paddies to aquaculture significantly reduced CH4 and N2O emissions by 48% and 56%, respectively. The emission factor for N2O was estimated to be 0.66% of total N input in the feed or 1.64 g N2O-N kg(-1) aquaculture production in aquaculture. The conversion of rice paddies to inland aquaculture would benefit for reconciling greenhouse gas mitigation and agricultural income increase as far as global warming potentials and net ecosystem economic profits are of concomitant concern. Some agricultural practices such as better aeration and feeding, and fallow season dredging would help to lower CH4 and N2O emissions from inland aquaculture. More field measurements from inland aquaculture are highly needed to gain an insight into national and global accounting of CH4 and N2O emissions.

Major viral diseases affecting fish aquaculture in Spain.

Science.gov (United States)

Pérez, S I; Rodríguez, S

1997-06-01

The number of viruses isolated from fish has grown in the last few years as a reflection of the increasing interest in fish diseases, particularly those occurring in aquaculture facilities. Of all the described viruses, only a few are considered to be of serious concern and economic importance; they are described in this review, drawing special attention to the four families of viruses (Birnaviridae, Rhabdoviridae, Iridoviridae and Reoviridae) that have been reported in Spanish aquaculture. Infectious pancreatic necrosis virus, a member of the first family, is the most spread virus with a prevalence of 39%. Viral diseases are untreatable and because effective and safe vaccines for fish are not yet commercially available, a great care needs to be exercised when moving fish or eggs from one site or country to another. Some fish health control regulations have been legislated in Europe and USA.

Bivalve aquaculture transfers in Atlantic Europe. Part A: Transfer activities and legal framework

DEFF Research Database (Denmark)

Muehlbauer, F.; Fraser, D.; Brenner, M.

2014-01-01

environment and address economic considerations remains unanswered. This study provides the first overview of bivalve transfer activities for aquaculture purposes along the European Atlantic coast. Existing international and EU legislation is described, and potential weaknesses in the existing legislative......Intentional transfers of numerous bivalve species have had a long tradition and are commonly conducted along the European Atlantic coast. However numerous studies have concluded that intentional transfer of species for aquaculture purposes is one of the most principal vectors for the introduction...... frameworks are discussed. Recommendations for the development of integrated risk assessment methods are given. These may help to minimize the intrinsic threats of transfer activities in marine environments. The resulting impacts and effects of transfer activities of bivalves for aquaculture purpose...

Business opportunities for aquaculture in Kenya; With special reference to food security : Key findings & Recommendations

NARCIS (Netherlands)

Rothuis, A.J.; Duijn, van A.P.; Rijsingen, J.C.M.; Pijl, van der W.; Rurangwa, E.

2011-01-01

This study aims to assess the potential role of aquaculture in improving food security in Kenya. It addresses current bottlenecks that prevent aquaculture from achieving its food security objectives and identifies possible interventions. This study furthermore explores business opportunities for

A techno-economic analysis of aquaculture business in Ogun State, Nigeria

Science.gov (United States)

Kareem, R. O.; Williams, S. B.

2009-05-01

Fish supplies 25% of the total protein source in developing countries. A techno-economic analysis was performed for developing a good business proposal for aquaculture loans to enhance aquaculture development in Nigeria. A case study of catfish Clarias gariepinus framing was conducted in Abeokuta North Local Government of Ogun State, Nigeria. The results show that the fixed cost is N18 338 per year, and the variable cost is N459 700 per year, accounting for the largest amount of the total; therefore, a profit of N43 289 per month can be made. Sensitivity analysis was performed to assess any risk(s) that associated with unfavorable changes in government policy with particular reference to monetary policy. Positive net present value shows that the investment in fish farm is economically feasible and the net investment ratio is 3.52. Also, the benefit-cost ratio is 2.17. The internal rate of return (IRR) is 21% showing that the enterprise is able to offset the interest being charged on the loan. It is therefore worthwhile to invest into fish farm business in the study area. The study suggests that to better sustain the local aquaculture business, the government should create a good conducive environment to foster development of the fish farming. Government intervention is urgently needed to solve problems such as in traditional land tenure, grant credit facilities and subsidies, to enhance the aquacultural development in the country.

AQUACULTURE AS A MEXICAN STRATEGY FOR ECONOMIC DEVELOPMENT OF COASTAL AND RURAL AREAS

Directory of Open Access Journals (Sweden)

Antonio Mártir Mendoza

2006-09-01

Full Text Available SUMMARYAquaculture is one of the worldwide economic activities which has grown in the last 30 years at an annual rate of 9-10.0 %. Poultry, pork, lamb and beef meat production have increased only at an annual rate of 3.0 % in the same period, and in the last five years has decreased due to aviar fever and other viral difficulties. While aquaculture growth takes place in far away countries as China near by countries as Costa Rica, Honduras, Brazil and Chile keeps the same tendency. As far as Mexico´s aquaculture is concerned, it has grown steadily, missing, even its way out. On the one hand fish catches do not grow since the middle of the 80´s when fish production reached 1.5 million tones. On the other hand aquaculture in fresh waters and in sea waters are almost staging due to the loss of authority and governmental management capacity to make decisions. The recently elected federal government which will take office next December 1st, has on its hands the opportunity to favor aquaculture production and doing so, to develop Mexican coastal and rural areas.

An ecosystem-based approach and management framework for the integrated evaluation of bivalve aquaculture impacts

NARCIS (Netherlands)

Cranford, P.J.; Kamermans, P.; Krause, G.H.M.; Mazurie, J.

2012-01-01

An ecosystem-based approach to bivalve aquaculture management is a strategy for the integration of aquaculture within the wider ecosystem, including human aspects, in such a way that it promotes sustainable development, equity, and resilience of ecosystems. Given the linkage between social and

Design & Test of Radio Communication and Control System for Aquaculture

Directory of Open Access Journals (Sweden)

Fengrong Jia

2013-05-01

Full Text Available Aiming at low automation degree and backward aquatic product management of current aquaculture in China, this paper designed a set of radio communication and control system which consists of 3 parts of information collection module, control module and radio communication module. This system both realizes wireless monitoring of quality parameters of water for aquaculture and realizes wireless control of water level and dissolved oxygen value through radio communication. Test results show that data transfer is more accurate and reliable after adding customized protocol and answer signals in radio communication. The highest error and missing rate within 1000 m is 0.36, the lowest error and missing rate is 0.05 and the longest response time is 49 ms. The dissolved oxygen value detection system designed in this paper is close to the testing value of existing dissolved oxygen value transmitter DO6309. With wireless data transfer mode, it has higher practicality. The wireless control of dissolved oxygen value and water level can be controlled within the appropriate range with stable and precise control. The study results can provide intelligent aquaculture model with simple operation and precise control for enormous aquatic breeders

Aquaculture-oriented genetic researches in abalone: Current status ...

African Journals Online (AJOL)

Hybridization, triploidization and genetic mapping were also briefly reviewed as aquaculture-oriented genetic techniques to improve growth and other commercially important traits. Cryopreservation and other biotechnologies potentially applicable on genetic improvement were also briefly mentioned as supporting tools for ...

National Strategic Environmental Assessment for aquaculture development in South Africa: GIS analysis for identifying optimal areas for marine and freshwater aquaculture development

CSIR Research Space (South Africa)

Snyman-van der Walt, Luanita

2017-06-01

Full Text Available The Department of Environmental Affairs and the Department of Agriculture, Forestry and Fisheries commissioned the Council for Scientific and Industrial Research to conduct a Strategic Environmental Assessment (SEA) for Aquaculture Development...

Annual methane and nitrous oxide emissions from rice paddies and inland fish aquaculture wetlands in southeast China

Science.gov (United States)

Wu, Shuang; Hu, Zhiqiang; Hu, Tao; Chen, Jie; Yu, Kai; Zou, Jianwen; Liu, Shuwei

2018-02-01

Inland aquaculture ponds have been documented as important sources of atmospheric methane (CH4) and nitrous oxide (N2O), while their regional or global source strength remains unclear due to lack of direct flux measurements by covering more typical habitat-specific aquaculture environments. In this study, we compared the CH4 and N2O fluxes from rice paddies and nearby inland fish aquaculture wetlands that were converted from rice paddies in southeast China. Both CH4 and N2O fluxes were positively related to water temperature and sediment dissolved organic carbon, but negatively related to water dissolved oxygen concentration. More robust response of N2O fluxes to water mineral N was observed than to sediment mineral N. Annual CH4 and N2O fluxes from inland fish aquaculture averaged 0.51 mg m-2 h-1 and 54.78 μg m-2 h-1, amounting to 42.31 kg CH4 ha-1 and 2.99 kg N2O-N ha-1, respectively. The conversion of rice paddies to conventional fish aquaculture significantly reduced CH4 and N2O emissions by 23% and 66%, respectively. The emission factor for N2O was estimated to be 0.46% of total N input in the feed or 1.23 g N2O-N kg-1 aquaculture production. The estimate of sustained-flux global warming potential of annual CH4 and N2O emissions and the net economic profit suggested that such conversion of rice paddies to inland fish aquaculture would help to reconcile the dilemma for simultaneously achieving both low climatic impacts and high economic benefits in China. More solid direct field measurements from inland aquaculture are in urgent need to direct the overall budget of national or global CH4 and N2O fluxes.

Genomic Data Commons and Genomic Cloud Pilots - Google Hangout

Science.gov (United States)

Join us for a live, moderated discussion about two NCI efforts to expand access to cancer genomics data: the Genomic Data Commons and Genomic Cloud Pilots. NCI subject matters experts will include Louis M. Staudt, M.D., Ph.D., Director Center for Cancer Genomics, Warren Kibbe, Ph.D., Director, NCI Center for Biomedical Informatics and Information Technology, and moderated by Anthony Kerlavage, Ph.D., Chief, Cancer Informatics Branch, Center for Biomedical Informatics and Information Technology. We welcome your questions before and during the Hangout on Twitter using the hashtag #AskNCI.

Management of marine cage aquaculture. Environmental carrying capacity method based on dry feed conversion rate.

Science.gov (United States)

Cai, Huiwen; Sun, Yinglan

2007-11-01

Marine cage aquaculture produces a large amount of waste that is released directly into the environment. To effectively manage the mariculture environment, it is important to determine the carrying capacity of an aquaculture area. In many Asian countries trash fish is dominantly used in marine cage aquaculture, which contains more water than pellet feed. The traditional nutrient loading analysis is for pellet feed not for trash fish feed. So, a more critical analysis is necessary in trash fish feed culturing areas. Corresponding to FCR (feed conversion rate), dry feed conversion rate (DFCR) was used to analyze the nutrient loadings from marine cage aquaculture where trash fish is used. Based on the hydrodynamic model and the mass transport model in Xiangshan Harbor, the relationship between the water quality and the waste discharged from cage aquaculture has been determined. The environmental carrying capacity of the aquaculture sea area was calculated by applying the models noted above. Nitrogen and phosphorus are the water quality parameters considered in this study. The simulated results show that the maximum nitrogen and phosphorus concentrations were 0.216 mg/L and 0.039 mg/L, respectively. In most of the sea area, the nutrient concentrations were higher than the water quality standard. The calculated environmental carrying capacity of nitrogen and phosphorus in Xiangshan Harbor were 1,107.37 t/yr and 134.35 t/yr, respectively. The waste generated from cage culturing in 2000 has already exceeded the environmental carrying capacity. Unconsumed feed has been identified as the most important origin of all pollutants in cage culturing systems. It suggests the importance of increasing the feed utilization and improving the feed composition on the basis of nutrient requirement. For the sustainable development of the aquaculture industry, it is an effective management measure to keep the stocking density and pollution loadings below the environmental carrying

The role of shellfish aquaculture in reduction of eutrophication in an urban estuary

DEFF Research Database (Denmark)

Bricker, Suzanne B.; Ferreira, Joao Gomes; Zhu, Changbo

2018-01-01

from the system-scale modeling, suggesting that this upscaling method could be useful in waterbodies without circulation models. The minimum value of the ecosystem service of nitrogen removed by oyster production was estimated by means of an avoided costs method, which uses the cost of alternative......, as an example of how aquaculture might complement land-based measures in urban estuaries. Eutrophication status, nutrient removal, and ecosystem service value were estimated through eutrophication assessment, application of hydrologic, circulation, and local- and ecosystem-scale models, and economic valuation....... System-scale modeling estimated that current oyster aquaculture, via sequestration into tissue and shell only, removes an equivalent of 1.31%, and expanded production could remove 2.68%, of total annual land-based nitrogen inputs by aquaculture alone. Up-scaled local-scale results were similar to results...

Current status of viral diseases in Indian shrimp aquaculture.

Science.gov (United States)

Tandel, G M; John, K Riji; Rosalind George, M; Prince Jeyaseelan, M J

The intensification of aquaculture has been unique in showing the overwhelming changes in global food production in the last 100 years. Presently, it is playing a vital role in the economies of several countries. Conversely, it is also to be noted that the progression of aquaculture has been the foundation of anthropogenic alteration of a gigantic hierarchy and hence not astonishingly, it resulted in spread and emergence of an increasing group of new unknown diseases. In India, Penaeus monodon, black tiger shrimp was previously the foremost-cultivated shrimp species. Subsequently in 2008, the American white leg shrimp Litopenaeus vannamei has effectively replaced it. The change in dominant species has affected disease concerns in India as well as in world shrimp aquaculture. White spot syndrome virus (WSSV) is the most deleterious for both species. Hepatopancreatic parvovirus (HPV), Monodon baculovirus (MBV) and Infectious hypodermal and hematopoietic necrosis virus (IHHNV) are the other significant infectious agents of P. monodon and L. vannamei. An emerging disease of loose shell syndrome (LSS) was already reported from India during late 1998. A more recent disease of L. vannamei in India is monodon slow growth syndrome (MSGS), a component of which seems to be Laem-Singh virus (LSNV). Thus, most of the information in this review relates to new emerging pathogens that threaten the cultivation shrimp industry in India.

Biotechnology and species development in aquaculture | Ayoola ...

African Journals Online (AJOL)

The use of biotechnology in various aspects of human endeavour have obviously created a great impact but not without some risks. Not withstanding, there is still the need for its adoption as more of the already adopted biotechnologies are being improved upon with lesser demerits. Aquaculture is not also left out in the ...

1 Ammonia Concentrations in Different Aquaculture 2

African Journals Online (AJOL)

Administrator

Introduction. Most studies have shown that the best feed for optimal fish production in aquaculture is one rich in high amount of protein. The amount of protein in the ..... Aquatic Science, Florida Coop, Ext. Serv. FA-16, 4 pp. Hargreaves J. A. and Tucker C. S. (2004). Managing. Ammonia in Fish Ponds. SRAC Publication Fact.

Update to the Atlantic salmon breeding program at the National Cold Water Marine Aquaculture Center

Science.gov (United States)

The USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC) in Franklin, ME has been supporting the U.S. coldwater marine aquaculture industry for the past thirteen years by developing a genetically improved North American Atlantic salmon. The St. John's River stock was chosen as the focal ...

40 CFR 122.25 - Aquaculture projects (applicable to State NPDES programs, see § 123.25).

Science.gov (United States)

2010-07-01

... DISCHARGE ELIMINATION SYSTEM Permit Application and Special NPDES Program Requirements § 122.25 Aquaculture... 40 Protection of Environment 21 2010-07-01 2010-07-01 false Aquaculture projects (applicable to State NPDES programs, see § 123.25). 122.25 Section 122.25 Protection of Environment ENVIRONMENTAL...

Water quality, seasonality, and trajectory of an aquaculture-wastewater plume in the Red Sea

KAUST Repository

Hozumi, Aya; Hong, Pei-Ying; Kaartvedt, S; Rø stad, Anders; Jones, Burton

2017-01-01

As aquaculture activity increases globally, understanding water mass characteristics of the aquaculture-wastewater plume, its nutrients, and its organic matter load and spatial distribution in the coastal recipient, is critical to develop a more sustainable aquaculture operation and to improve coastal management. We examined wastewater (estimated 42-48 m3 s-1) discharged from the largest aquaculture facility in the Red Sea and surveyed the area around the aquaculture outfall to characterize the biogeochemical properties of the wastewater plume and its spatial distribution. In addition, we assessed its associated microbial community structure. The plume was characterized by elevated levels of salinity, density, and turbidity, and traveled along paths determined by the bathymetry to form a dense, 1-3 m thick layer above the seafloor. The effluent was observed at least 3.8 km from the outfall throughout the year, but up to 8 km in early autumn. The total nitrogen concentration in the plume was more than 4 times higher than in surface waters 1.4 km from the outfall. High-throughput sequencing data revealed that bacterial and cyanobacterial communities significantly differed, and flow cytometry results showed that total cell counts were significantly higher at the outfall. Arcobacter, a genus associated with opportunistic pathogenic species (e.g. A. butzleri), was more abundant, while Prochlorococcus sp. was significantly less abundant at the outfall. This dense, bottom-flowing plume may have a detrimental impact on benthic and demersal communities.

Water quality, seasonality, and trajectory of an aquaculture-wastewater plume in the Red Sea

KAUST Repository

Hozumi, Aya

2017-12-28

As aquaculture activity increases globally, understanding water mass characteristics of the aquaculture-wastewater plume, its nutrients, and its organic matter load and spatial distribution in the coastal recipient, is critical to develop a more sustainable aquaculture operation and to improve coastal management. We examined wastewater (estimated 42-48 m3 s-1) discharged from the largest aquaculture facility in the Red Sea and surveyed the area around the aquaculture outfall to characterize the biogeochemical properties of the wastewater plume and its spatial distribution. In addition, we assessed its associated microbial community structure. The plume was characterized by elevated levels of salinity, density, and turbidity, and traveled along paths determined by the bathymetry to form a dense, 1-3 m thick layer above the seafloor. The effluent was observed at least 3.8 km from the outfall throughout the year, but up to 8 km in early autumn. The total nitrogen concentration in the plume was more than 4 times higher than in surface waters 1.4 km from the outfall. High-throughput sequencing data revealed that bacterial and cyanobacterial communities significantly differed, and flow cytometry results showed that total cell counts were significantly higher at the outfall. Arcobacter, a genus associated with opportunistic pathogenic species (e.g. A. butzleri), was more abundant, while Prochlorococcus sp. was significantly less abundant at the outfall. This dense, bottom-flowing plume may have a detrimental impact on benthic and demersal communities.

Scaling-up Sustainable Aquaculture Development in Sri Lanka ...

International Development Research Centre (IDRC) Digital Library (Canada)

The project will also test the efficacy of different governance models for sustainable aquaculture management, to understand which institutional partnerships work best for knowledge mobilization. Third, the project will find ways to overcome factors currently limiting sustainable production, namely the supply of fingerlings for ...

Phage-Host Interactions in Flavobacterium psychrophilum and the Potential for Phage Therapy in Aquaculture

DEFF Research Database (Denmark)

Christiansen, Rói Hammershaimb

, the increasing problem with antibiotic resistance has led to increased attention to the use of phages for controlling F. psychrophilum infections in aquaculture. In a synopsis and four scientific papers, this PhD project studies the potential and optimizes the use of phage therapy for treatment and prevention......, studies of the genetic diversity and susceptibility patterns of F. psychrophilum strains and phages isolated in three geographically distinct areas (Chile, Denmark, and USA) showed that the strains and phages clustered into geographically distinct groups. However, cross-infectivity between Chilean phage......-phage. In the third paper, a detailed analysis of the resistance mechanisms in F. psychrophilum and six phage resistant mutants was done. The results revealed unique changes in the genomes in all the phage resistant strains and that some of these changes were related to cell surface properties which were suggested...

Japanese aquaculture: use of thermal water from power plant

International Nuclear Information System (INIS)

Kuroda, Takeya

1983-01-01

There is some merit of thermal water from power plants in the effect to marine life. Since 1963, the research and development on the aquaculture using this warm water have been carried out at some twenty power plants, seven nuclear and thirteen thermal, some of which are now in the commercial stage. These fish farming projects are operated variously from seed to adult fish production. They can also be classified as land and sea facilities, conforming to the characteristics of the respective sea areas. The current situation in this field and the future prospect are described: thermal aquaculture including seed production and adult fish farming; the projects in nuclear and thermal power plants, respectively; future problems in the facilities, breeding environment and marine life for cultivation. (Mori, K.)

Challenges in Whole-Genome Annotation of Pyrosequenced Eukaryotic Genomes

Energy Technology Data Exchange (ETDEWEB)

Kuo, Alan; Grigoriev, Igor

2009-04-17

Pyrosequencing technologies such as 454/Roche and Solexa/Illumina vastly lower the cost of nucleotide sequencing compared to the traditional Sanger method, and thus promise to greatly expand the number of sequenced eukaryotic genomes. However, the new technologies also bring new challenges such as shorter reads and new kinds and higher rates of sequencing errors, which complicate genome assembly and gene prediction. At JGI we are deploying 454 technology for the sequencing and assembly of ever-larger eukaryotic genomes. Here we describe our first whole-genome annotation of a purely 454-sequenced fungal genome that is larger than a yeast (>30 Mbp). The pezizomycotine (filamentous ascomycote) Aspergillus carbonarius belongs to the Aspergillus section Nigri species complex, members of which are significant as platforms for bioenergy and bioindustrial technology, as members of soil microbial communities and players in the global carbon cycle, and as agricultural toxigens. Application of a modified version of the standard JGI Annotation Pipeline has so far predicted ~;;10k genes. ~;;12percent of these preliminary annotations suffer a potential frameshift error, which is somewhat higher than the ~;;9percent rate in the Sanger-sequenced and conventionally assembled and annotated genome of fellow Aspergillus section Nigri member A. niger. Also,>90percent of A. niger genes have potential homologs in the A. carbonarius preliminary annotation. Weconclude, and with further annotation and comparative analysis expect to confirm, that 454 sequencing strategies provide a promising substrate for annotation of modestly sized eukaryotic genomes. We will also present results of annotation of a number of other pyrosequenced fungal genomes of bioenergy interest.

Current Status of Federal Involvement in U.S. Aquaculture

National Research Council Canada - National Science Library

1995-01-01

...; little reached commercial markets. Although trout had been produced for food since the turn of the century, only with the advent of the catfish culture industry did commercial aquaculture gain visibility as a market force...

Impact of pond aquaculture effluents on seagrass performance in NE Hainan, tropical China

International Nuclear Information System (INIS)

Herbeck, Lucia S.; Sollich, Miriam; Unger, Daniela; Holmer, Marianne; Jennerjahn, Tim C.

2014-01-01

Highlights: • Seagrass performance in relation to large-scale pond aquaculture was assessed. • Effluent-affected seagrass meadows have a low biodiversity, shoot density and biomass. • Shading by epiphytes and sulphide poisoning are major decline mechanisms of seagrasses. • Distance to effluent source and pond agglomeration size are major determinants of seagrass degradation. - Abstract: The impact of pond aquaculture effluents on the distribution and performance of seagrasses was examined in NE Hainan, tropical China. Samples were taken along transects in three back-reef areas with different extent of aquaculture production in their hinterland. High δ 15 N in seagrass leaves and epiphytes (6–9‰) similar to values in pond effluents documented aquaculture as dominant nitrogen source in the back-reefs with decreasing impact with distance from shore. Seagrass species abundance, shoot density and biomass were lower and concentrations of nutrients, chlorophyll and suspended matter were higher at nearshore sites with high and moderate pond abundance than at the control site. High epiphyte loads and low δ 34 S in seagrass leaves suggest temporal shading and sulphide poisoning of the nearshore seagrasses. Observed gradients in environmental parameters and seagrass performance indicate that the distance from the pond outlets and size of the adjacent pond agglomeration are major determinants of seagrass degradation

Carbon sequestration capacity of sediments, algae, and zooplankton from fresh water aquaculture ponds.

Science.gov (United States)

Anikuttan, K K; Adhikari, S; Kavitha, M; Jayasankar, P

2016-07-01

The contribution of aquaculture and allied activities to the emission of green house gases and consequently to global warming is an emerging concern among environmentalists in the recent past. However, there exists ample scope for aquaculture activities to sequester carbon and thus compensate for the carbon emissions linked to aquaculture. This article attempts to elucidate the carbon sequestration capacity of sediments, algae, and zooplankton from fresh water aquaculture ponds. The percent organic carbon in the pond sediments ranged from 0.39 to 1.31 with an average value of 0.912 ± 0.321 whereas the carbon sequestration capacity ranged from 0.442 to 1.882 MgC/ha (1 Mg = 10(6) g) with an average value of 1.018 ± 0.447 MgC/ha. In the case of zooplankton and algae from pond, the percent organic carbon was 7.688 ± 0.196 and 2.354 ± 0.047, respectively, whereas the total estimated carbon burial rate was 0.009 ± 0.005 and 0.150 ± 0.003 MgC/ha, respectively. These findings are discussed with the previous reports available at present and are found to be in comparable ranges.

Carbon dioxide stripping in aquaculture. part 1: terminology and reporting

Science.gov (United States)

Colt, John; Watten, Barnaby; Pfeiffer, Tim

2012-01-01

The removal of carbon dioxide gas in aquacultural systems is much more complex than for oxygen or nitrogen gas because of liquid reactions of carbon dioxide and their kinetics. Almost all published carbon dioxide removal information for aquaculture is based on the apparent removal value after the CO2(aq) + HOH ⇔ H2CO3 reaction has reached equilibrium. The true carbon dioxide removal is larger than the apparent value, especially for high alkalinities and seawater. For low alkalinity freshwaters (<2000 μeq/kg), the difference between the true and apparent removal is small and can be ignored for many applications. Analytical and reporting standards are recommended to improve our understanding of carbon dioxide removal.

Research and Development Strategy for Fishery Technology Innovation for Sustainable Fishery Resource Management in North-East Asia

Directory of Open Access Journals (Sweden)

Hidemichi Fujii

2017-12-01

Full Text Available The development of fishery technologies supports food sustainability to achieve a steady supply of fish and fishery products. However, the priorities for research and development (R&D in fishery technologies vary by region due to differences in fish resource availability, environmental concerns, and consumer preferences for fishery products. This study examines trends in fishery technology innovations using data on patents granted as an indicator of changing R&D priorities. To clarify changes in R&D priorities, we apply a decomposition analysis framework that classifies fishery technologies into three types: harvesting, aquaculture, and new products. This study mainly focuses on China, Japan, and Korea as the major fishing countries in the north-east Asia region. The results show that the number of fishery technology patents granted increased between 1993 and 2015; in particular, the number of aquaculture patents granted has grown rapidly since 2012. However, the trend in Japan was the opposite, as the apparent priority given to aquaculture technology innovation decreased between 1993 and 2015. The trends and priority changes for fishery technology inventions vary by country and technology group. This implies that an international policy framework for fishery technology development should recognize that R&D priorities need to reflect diverse characteristics across countries and the technologies employed.

The mitochondrial genome in embryo technologies.

Science.gov (United States)

Hiendleder, S; Wolf, E

2003-08-01

The mammalian mitochondrial genome encodes for 37 genes which are involved in a broad range of cellular functions. The mitochondrial DNA (mtDNA) molecule is commonly assumed to be inherited through oocyte cytoplasm in a clonal manner, and apparently species-specific mechanisms have evolved to eliminate the contribution of sperm mitochondria after natural fertilization. However, recent evidence for paternal mtDNA inheritance in embryos and offspring questions the general validity of this model, particularly in the context of assisted reproduction and embryo biotechnology. In addition to normal mt DNA haplotype variation, oocytes and spermatozoa show remarkable differences in mtDNA content and may be affected by inherited or acquired mtDNA aberrations. All these parameters have been correlated with gamete quality and reproductive success rates. Nuclear transfer (NT) technology provides experimental models for studying interactions between nuclear and mitochondrial genomes. Recent studies demonstrated (i) a significant effect of mtDNA haplotype or other maternal cytoplasmic factors on the efficiency of NT; (ii) phenotypic differences between transmitochondrial clones pointing to functionally relevant nuclear-cytoplasmic interactions; and (iii) neutral or non-neutral selection of mtDNA haplotypes in heteroplasmic conditions. Mitochondria form a dynamic reticulum, enabling complementation of mitochondrial components and possibly mixing of different mtDNA populations in heteroplasmic individuals. Future directions of research on mtDNA in the context of reproductive biotechnology range from the elimination of adverse effects of artificial heteroplasmy, e.g. created by ooplasm transfer, to engineering of optimized constellations of nuclear and cytoplasmic genes for the production of superior livestock.

Economic valuation of Mangroves for comparison with commercial aquaculture in south Sulawesi, Indonesia

DEFF Research Database (Denmark)

Malik, Abdul; Fensholt, Rasmus; Mertz, Ole

2015-01-01

Mangroves are recognized as a provider of a variety of products and essential ecosystem services that contribute significantly to the livelihood of local communities. However, over the past decades, mangroves in many tropical areas including the Takalar district, South Sulawesi have degraded...... and decreased mainly due to conversion to aquaculture. Currently, little is known about the economic benefits of commercialization of aquaculture as compared to those derived from mangroves in the form of products and services. Here, we estimate the Total Economic Value (TEV) of mangrove benefits in order...... to compare it with the benefit value of commercial aquaculture. Market prices, replacement costs, benefit transfer value and Cost-Benefit Analyses (CBA) have been used for value determination and comparison. The results show that the per year TEV of mangroves in the study area (Takalar district, South...

Sustainable aquaculture in ponds: Principles, practices and limits

NARCIS (Netherlands)

Bosma, R.H.; Verdegem, M.C.J.

2011-01-01

The global aquaculture production of crustaceans, shellfish and fish has to increase to satisfy the growing demand and also to compensate for the reduced capture from overexploited fisheries. Extending the area of brackish and fresh water ponds is constrained by the limited availability of land and

adoption of improved aquaculture practices by shrimp farmers

African Journals Online (AJOL)

Dr.Adesope

use of check trays and adjustment of feed accordingly (95.0%), formation of ... Key words: adoption, improved aquaculture, shrimp farmers ... Brackish water shrimp farming is getting more attention because of high profitability ..... water and pond water whereas 52.5% of farmers did not observe the actual acclimatisation.

Selection of sustainable seaweed and grouper aquaculture development strategy: a case of Pulau Panjang, Serang Regency Banten Province

Science.gov (United States)

Soejarwo, P. A.; Fitriyanny, W. P.; Heriati, A.; Hakim, A. R.

2018-03-01

Due to their high-income contribution, seaweed and grouper aquacultures are important activities in Pulau Panjang community. Determining alternative strategies in developing sustainable aquaculture for seaweed and grouper and their priority factors from theses aquaculture activities are done using TOPSIS and AHP analysis. It was found that the development strategy that must be taken is the option to maintain aquaculture activities, while, environment factor is the highest priority to maintain seaweed and grouper aquaculture in Pulau Panjang. Then three priorities are obtained from environment factor. The first is to maintain the water quality by the growth requirements of seaweed and grouper by encouraging the formation of “Environmental Community Awareness” that involved the active participation of the community to maintain quality and carrying capacity of the environment. Second is to use of natural or artificial coastal protectors (soft structure). The third priority strategy is integration and real implementation of heavy metal pollution control between government, industry sector and society.

How to measure the economic impacts of changes in growth, feed efficiency and survival in aquaculture

NARCIS (Netherlands)

Kankainen, M.; Setala, J.; Berrill, I.K.; Ruohonen, K.; Noble, C.; Schneider, O.

2012-01-01

In this article we introduce a variety of bio-economic models that can be used to calculate the economic benefits associated with improved productivity in aquaculture. In the aquaculture industry, three important biological productivity factors are growth, survival and feed efficiency. The

The use of phage FCL-2 as an alternative to chemotherapy against columnaris disease in aquaculture

Directory of Open Access Journals (Sweden)

Elina eLaanto

2015-08-01

Full Text Available Flavobacterium columnare, the causative agent of columnaris disease in fish, causes millions of dollars of losses in the US channel catfish industry alone, not to mention aquaculture industry worldwide. Novel methods are needed for the control and treatment of bacterial diseases in aquaculture to replace traditionally used chemotherapies. A potential solution could be the use of phages, i.e., bacterial viruses, host-specific and self-enriching particles that can be can easily distributed via water flow. We examined the efficacy of phages to combat columnaris disease. A previously isolated phage, FCL-2, infecting F. columnare, was characterized by sequencing. The 47 142 bp genome of the phage had G + C content of 30.2%, and the closest similarities regarding the structural proteins were found in Cellulophaga phage phiSM. Under controlled experimental conditions, two host fish species, rainbow trout (Oncorhynchus mykiss and zebrafish (Danio rerio, were used to study the success of phage therapy to prevent F. columnare infections. The survival of both fish species was significantly higher in the presence of the phage. Hundred percent of the zebrafish and 50 % of the rainbow trout survived in the phage treatment (survival without phage 0 % and 8.3 %, respectively. Most importantly, the rainbow trout population was rescued from infection by a single addition of the phage into the water in a flow-through fish tank system. Thus, F. columnare could be used as a model system to test the benefits and risks of phage therapy on a larger scale.

Identification and analysis of genome-wide SNPs provide insight into signatures of selection and domestication in channel catfish (Ictalurus punctatus.

Directory of Open Access Journals (Sweden)

Luyang Sun

Full Text Available Domestication and selection for important performance traits can impact the genome, which is most often reflected by reduced heterozygosity in and surrounding genes related to traits affected by selection. In this study, analysis of the genomic impact caused by domestication and artificial selection was conducted by investigating the signatures of selection using single nucleotide polymorphisms (SNPs in channel catfish (Ictalurus punctatus. A total of 8.4 million candidate SNPs were identified by using next generation sequencing. On average, the channel catfish genome harbors one SNP per 116 bp. Approximately 6.6 million, 5.3 million, 4.9 million, 7.1 million and 6.7 million SNPs were detected in the Marion, Thompson, USDA103, Hatchery strain, and wild population, respectively. The allele frequencies of 407,861 SNPs differed significantly between the domestic and wild populations. With these SNPs, 23 genomic regions with putative selective sweeps were identified that included 11 genes. Although the function for the majority of the genes remain unknown in catfish, several genes with known function related to aquaculture performance traits were included in the regions with selective sweeps. These included hypoxia-inducible factor 1β. HIFιβ.. and the transporter gene ATP-binding cassette sub-family B member 5 (ABCB5. HIF1β. is important for response to hypoxia and tolerance to low oxygen levels is a critical aquaculture trait. The large numbers of SNPs identified from this study are valuable for the development of high-density SNP arrays for genetic and genomic studies of performance traits in catfish.

[Preface for genome editing special issue].

Science.gov (United States)

Gu, Feng; Gao, Caixia

2017-10-25

Genome editing technology, as an innovative biotechnology, has been widely used for editing the genome from model organisms, animals, plants and microbes. CRISPR/Cas9-based genome editing technology shows its great value and potential in the dissection of functional genomics, improved breeding and genetic disease treatment. In the present special issue, the principle and application of genome editing techniques has been summarized. The advantages and disadvantages of the current genome editing technology and future prospects would also be highlighted.

High Concentration of Red Clay as an Alternative for Antibiotics in Aquaculture.

Science.gov (United States)

Jung, Jaejoon; Jee, Seung Cheol; Sung, Jung-Suk; Park, Woojun

2016-01-01

The use of antibiotics in aquaculture raises environmental and food safety concerns because chronic exposure of an aquatic ecosystem to antibiotics can result in the spread of antibiotic resistance, bioaccumulation of antibiotics in the organisms, and transfer of antibiotics to humans. In an attempt to overcome these problems, high-concentration red clay was applied as an alternative antibiotic against the following common fish pathogens: Aeromonas salmonicida, Vibrio alginolyticus, and Streptococcus equinus. The growth of A. salmonicida and V. alginolyticus was retarded by red clay, whereas that of S. equinus was promoted. Phase contrast and scanning electron microscopy analyses confirmed the attachment of red clay on cell surfaces, resulting in rapid gravitational removal and cell surface damage in both A. salmonicida and V. alginolyticus, but not in S. equinus. Different cell wall properties of grampositive species may explain the unharmed cell surface of S. equinus. Significant levels of oxidative stress were generated in only the former two species, whereas significant changes in membrane permeability were found only in S. equinus, probably because of its physiological adaptation. The bacterial communities in water samples from Oncorhynchus mykiss aquacultures supplemented with red clay showed similar structure and diversity as those from oxytetracycline-treated water. Taken together, the antibiotic effects of high concentrations of red clay in aquaculture can be attributed to gravitational removal, cell surface damage, and oxidative stress production, and suggest that red clay may be used as an alternative for antibiotics in aquaculture.

The influence of finfish aquaculture on benthic fish and crustacean assemblages in Fitzgerald Bay, South Australia

Directory of Open Access Journals (Sweden)

Jason E. Tanner

2015-09-01

Full Text Available The influence of sea-cage aquaculture on wildfish assemblages has received little attention outside of Europe. Sea-cage aquaculture of finfish is a major focus in South Australia, and while the main species farmed is southern bluefin tuna (Thunnus maccoyii, there is also an important yellowtail kingfish (Seriola lalandi industry. Yellowtail kingfish aquaculture did not appear to have any local or regional effects on demersal assemblages (primarily fish, but also some crustaceans surveyed by baited remote underwater video (BRUV in Fitzgerald Bay. We did, however, detect small scale spatial variations in assemblages within the bay. The type of bait used strongly influenced the assemblage recorded, with significantly greater numbers of fish attracted to deployments where sardines were used as the bait to compared to those with no bait. The pelleted feed used by the aquaculture industry was just as attractive as sardines at one site, and intermediate between sardines and no bait at the other. There was significant temporal variability in assemblages at both farm sites and one control site, while the second control site was temporally stable (over the 9 weeks of the study. Overall, the results suggested that aquaculture was having little if any impact on the abundance and assemblage structure of the demersal macrofauna in Fitzgerald Bay.

Economic Analysis on Key Challenges for Sustainable Aquaculture Development

DEFF Research Database (Denmark)

Gedefaw Abate, Tenaw

challenges that could obstruct its sustainable development, such as a lack of suitable feed, which includes fishmeal, fish oil and live feed, and negative environmental externalities. If the aquaculture industry is to reach its full potential, it must be both environmentally and economically sustainable...... environmental externalities. A sustainable supply of high-quality live feeds at reasonable prices is absolutely essential for aquaculture hatcheries because many commercially produced high-value marine fish larval species, such as flounder, grouper, halibut, tuna and turbot, require live feed for their early...... developmental stage. The key challenge in this regard is that the conventional used live feed items, Artemia and rotifers, are nutritionally deficient. Thus, the first main purpose of the thesis is carrying out an economic analysis of the feasibility of commercial production and the use of an alternative live...

Evaluation of Internalisation Processes in Environmental Management Systems: Aquaculture and Offshore Mussel Farming

OpenAIRE

Malorgio, Giulio

2005-01-01

In recent years, particular attention has been paid to fishing activities, and more specifically to aquaculture, a production process whose environmental impact at present is not being adequately submitted to any sort of serious assessment and control. The impact of aquaculture on the environment has nonetheless become an important issue for both potential customers and public opinion. The purpose of this study is to appraise environmental protection costs if and when a certified program of e...

Does the Recent Growth of Aquaculture Create Antibiotic Resistance Threats Different from those Associated with Land Animal Production in Agriculture?

Science.gov (United States)

Done, Hansa Y; Venkatesan, Arjun K; Halden, Rolf U

2015-05-01

Important antibiotics in human medicine have been used for many decades in animal agriculture for growth promotion and disease treatment. Several publications have linked antibiotic resistance development and spread with animal production. Aquaculture, the newest and fastest growing food production sector, may promote similar or new resistance mechanisms. This review of 650+ papers from diverse sources examines parallels and differences between land-based agriculture of swine, beef, and poultry and aquaculture. Among three key findings was, first, that of 51 antibiotics commonly used in aquaculture and agriculture, 39 (or 76%) are also of importance in human medicine; furthermore, six classes of antibiotics commonly used in both agriculture and aquaculture are also included on the World Health Organization's (WHO) list of critically important/highly important/important antimicrobials. Second, various zoonotic pathogens isolated from meat and seafood were observed to feature resistance to multiple antibiotics on the WHO list, irrespective of their origin in either agriculture or aquaculture. Third, the data show that resistant bacteria isolated from both aquaculture and agriculture share the same resistance mechanisms, indicating that aquaculture is contributing to the same resistance issues established by terrestrial agriculture. More transparency in data collection and reporting is needed so the risks and benefits of antibiotic usage can be adequately assessed.

Linked sustainability challenges and trade-offs among fisheries, aquaculture and agriculture.

Science.gov (United States)

Blanchard, Julia L; Watson, Reg A; Fulton, Elizabeth A; Cottrell, Richard S; Nash, Kirsty L; Bryndum-Buchholz, Andrea; Büchner, Matthias; Carozza, David A; Cheung, William W L; Elliott, Joshua; Davidson, Lindsay N K; Dulvy, Nicholas K; Dunne, John P; Eddy, Tyler D; Galbraith, Eric; Lotze, Heike K; Maury, Olivier; Müller, Christoph; Tittensor, Derek P; Jennings, Simon

2017-09-01

Fisheries and aquaculture make a crucial contribution to global food security, nutrition and livelihoods. However, the UN Sustainable Development Goals separate marine and terrestrial food production sectors and ecosystems. To sustainably meet increasing global demands for fish, the interlinkages among goals within and across fisheries, aquaculture and agriculture sectors must be recognized and addressed along with their changing nature. Here, we assess and highlight development challenges for fisheries-dependent countries based on analyses of interactions and trade-offs between goals focusing on food, biodiversity and climate change. We demonstrate that some countries are likely to face double jeopardies in both fisheries and agriculture sectors under climate change. The strategies to mitigate these risks will be context-dependent, and will need to directly address the trade-offs among Sustainable Development Goals, such as halting biodiversity loss and reducing poverty. Countries with low adaptive capacity but increasing demand for food require greater support and capacity building to transition towards reconciling trade-offs. Necessary actions are context-dependent and include effective governance, improved management and conservation, maximizing societal and environmental benefits from trade, increased equitability of distribution and innovation in food production, including continued development of low input and low impact aquaculture.

The formation of a risk management system for projects in the field of aquaculture innovative development in the Kaliningrad region: a case study

Directory of Open Access Journals (Sweden)

Serbulov Alexey

2012-03-01

Full Text Available This article sets out to develop the concept and the principal scheme of the formation of a risk management system for innovative economic development projects in the field of aquaculture. The research carried out by the authors helps identify the main problems and characteristics of risk management projects for the development of aquaculture in presentday Russia. The authors outline the status and features of aquaculture development projects in the North-western federal district and the Kaliningrad region. The article formulates and justifies the concept of “risk management projects in innovative development of aquaculture in the region” focusing on the classification of aquaculture risks in relation to innovative development projects, which expands the conceptual framework of risk management in view of the specific risks relating to economic development projects in the field of aquaculture. The authors characterize modern methods and approaches to risk management projects and organizations in the context of their application in the framework of aquaculture development projects and offer mechanisms for risk management of aquaculture development projects, which make it possible to include risk management activity in the general context of activities of parent project organizations. The authors develop the concept and principal scheme of the formation of risk management system for innovative development projects in aquaculture.

A comprehensive survey on selective breeding programs and seed market in the European aquaculture fish industry

NARCIS (Netherlands)

Chavanne, Hervé; Janssen, K.P.E.; Hofherr, Johann; Contini, Franca; Haffray, P.; Komen, J.; Nielsen, E.E.; Bargelloni, L.

2016-01-01

The use of selective breeding is still relatively limited in aquaculture species. Information on such activities is sparse, hindering an overall evaluation of their success. Here, we report on the results of an online survey of the major aqua-culture breeding companies operating in Europe. Six main

New aquaculture drugs under FDA review

Science.gov (United States)

Bowker, James D.; Gaikowski, Mark P.

2012-01-01

Only eight active pharmaceutical ingredients available in 18 drug products have been approved by the U.S. Food and Drug Administration for use in aquaculture. The approval process can be lengthy and expensive, but several new drugs and label claims are under review. Progress has been made on approvals for Halamid (chloramine-T), Aquaflor (florfenicol) and 35% PeroxAid (hydrogen peroxide) as therapeutic drugs. Data are also being generated for AQUI-S 20E, a fish sedative.

Analysis of nutrient flows in integrated intensive aquaculture systems

NARCIS (Netherlands)

Schneider, O.; Sereti, V.; Eding, E.H.; Verreth, J.A.J.

2005-01-01

This paper analyses nutrient conversions, which are taking place in integrated intensive aquaculture systems. In these systems fish is cultured next to other organisms, which are converting otherwise discharged nutrients into valuable products. These conversions are analyzed based on nitrogen and

A SWOT analysis of aquaculture development in rural areas of Iran, an application to Rainbow trout (Oncorhynchus mykiss

Directory of Open Access Journals (Sweden)

Roxana Moogouei

2014-03-01

Full Text Available In this study various important indices were selected to assess the sustainable aquaculture strategies in rural areas of Iran. In addition the government officials, consultants and managers were surveyed to assess the indices of aquaculture development. The strengths, weaknesses, opportunities and threats   analyses were used to make a comprehensive evaluation on internal and external factors, participating the development of aquaculture strategies. The sum of the attractiveness scores from the Internal Factor Evaluation Matrix was approximately 2.55, being larger than 2.5, indicating that the strengths exceed the weaknesses. The sum of the External Factor Evaluation Matrix scores was 3.49, indicating that opportunities were higher than threats. This analysis showed that the development of aquaculture, promotion of new cold-water species production, productivity enhancement, establishment of hatchery facilities and formation of an effective support organization are the most important strategies that should be considered in the studied area. Results obtained on this research help decision makers on work of the aquaculture sector in rural areas of Iran.

Holographic Aquaculture

Science.gov (United States)

Ian, Richard; King, Elisabeth

1988-01-01

Proposed is an exploratory study to verify the feasibility of an inexpensive micro-climate control system for both marine and freshwater pond and tank aquaculture, offering good control over water temperature, incident light flux, and bandwidth, combined with good energy efficiency. The proposed control system utilizes some familiar components of passive solar design, together with a new holographic glazing system which is currently being developed by, and proprietary to Advanced Environmental Research Group (AERG). The use of solar algae ponds and tanks to warm and purify water for fish and attached macroscopic marine algae culture is an ancient and effective technique, but limited seasonally and geographically by the availability of sunlight. Holographic Diffracting Structures (HDSs) can be made which passively track, accept and/or reject sunlight from a wide range of altitude and azimuth angles, and redirect and distribute light energy as desired (either directly or indirectly over water surface in an enclosed, insulated structure), effectively increasing insolation values by accepting sunlight which would not otherwise enter the structure.

Integrating proteomic and functional genomic technologies in discovery-driven translational breast cancer research

DEFF Research Database (Denmark)

Celis, Julio E; Gromov, Pavel; Gromova, Irina

2003-01-01

The application of state-of-the-art proteomics and functional genomics technologies to the study of cancer is rapidly shifting toward the analysis of clinically relevant samples derived from patients, as the ultimate aim of translational research is to bring basic discoveries closer to the bedside...

Draft genome of the lined seahorse, Hippocampus erectus.

Science.gov (United States)

Lin, Qiang; Qiu, Ying; Gu, Ruobo; Xu, Meng; Li, Jia; Bian, Chao; Zhang, Huixian; Qin, Geng; Zhang, Yanhong; Luo, Wei; Chen, Jieming; You, Xinxin; Fan, Mingjun; Sun, Min; Xu, Pao; Venkatesh, Byrappa; Xu, Junming; Fu, Hongtuo; Shi, Qiong

2017-06-01

The lined seahorse, Hippocampus erectus , is an Atlantic species and mainly inhabits shallow sea beds or coral reefs. It has become very popular in China for its wide use in traditional Chinese medicine. In order to improve the aquaculture yield of this valuable fish species, we are trying to develop genomic resources for assistant selection in genetic breeding. Here, we provide whole genome sequencing, assembly, and gene annotation of the lined seahorse, which can enrich genome resource and further application for its molecular breeding. A total of 174.6 Gb (Gigabase) raw DNA sequences were generated by the Illumina Hiseq2500 platform. The final assembly of the lined seahorse genome is around 458 Mb, representing 94% of the estimated genome size (489 Mb by k-mer analysis). The contig N50 and scaffold N50 reached 14.57 kb and 1.97 Mb, respectively. Quality of the assembled genome was assessed by BUSCO with prediction of 85% of the known vertebrate genes and evaluated using the de novo assembled RNA-seq transcripts to prove a high mapping ratio (more than 99% transcripts could be mapped to the assembly). Using homology-based, de novo and transcriptome-based prediction methods, we predicted 20 788 protein-coding genes in the generated assembly, which is less than our previously reported gene number (23 458) of the tiger tail seahorse ( H. comes ). We report a draft genome of the lined seahorse. These generated genomic data are going to enrich genome resource of this economically important fish, and also provide insights into the genetic mechanisms of its iconic morphology and male pregnancy behavior. © The Authors 2017. Published by Oxford University Press.

Dissolved oxygen and aeration in ictalurid catfish aquaculture

Science.gov (United States)

Feed-based production of ictalurid catfish in ponds is the largest aquaculture sector in the United States. The feed biochemical oxygen demand (FBOD) typically is 1.1-1.2 kg O2/kg feed. Feed also results in a substantial increase of carbon dioxide, ammonia nitrogen, and phosphate to ponds, and this ...

Development and potential applications of CRISPR-Cas9 genome editing technology in sarcoma.

Science.gov (United States)

Liu, Tang; Shen, Jacson K; Li, Zhihong; Choy, Edwin; Hornicek, Francis J; Duan, Zhenfeng

2016-04-01

Sarcomas include some of the most aggressive tumors and typically respond poorly to chemotherapy. In recent years, specific gene fusion/mutations and gene over-expression/activation have been shown to drive sarcoma pathogenesis and development. These emerging genomic alterations may provide targets for novel therapeutic strategies and have the potential to transform sarcoma patient care. The RNA-guided nuclease CRISPR-Cas9 (Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated protein-9 nuclease) is a convenient and versatile platform for site-specific genome editing and epigenome targeted modulation. Given that sarcoma is believed to develop as a result of genetic alterations in mesenchymal progenitor/stem cells, CRISPR-Cas9 genome editing technologies hold extensive application potentials in sarcoma models and therapies. We review the development and mechanisms of the CRISPR-Cas9 system in genome editing and introduce its application in sarcoma research and potential therapy in clinic. Additionally, we propose future directions and discuss the challenges faced with these applications, providing concise and enlightening information for readers interested in this area. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Coral aquaculture: applying scientific knowledge to ex situ production

NARCIS (Netherlands)

Leal, M.C.; Ferrier-Pagès, C.; Petersen, D.; Osinga, R.

2016-01-01

Coral aquaculture is an activity of growing interest due to the degradation of coral reefs worldwide and concomitant growing demand for corals by three industries: marine ornamental trade, pharmaceutical industry and reef restoration. Although captive breeding and propagation of corals is a

Treatment of turtle aquaculture effluent by an improved multi-soil-layer system.

Science.gov (United States)

Song, Ying; Huang, Yu-ting; Ji, Hong-fang; Nie, Xin-jun; Zhang, Zhi-yuan; Ge, Chuan; Luo, An-cheng; Chen, Xin

2015-02-01

Concentrated turtle aquaculture effluent poses an environmental threat to water bodies, and therefore needs to be treated prior to disposal. This study was conducted to assess the effect of multi-soil-layer (MSL) systems treating turtle aquaculture effluent with adding different amounts of sludge. Four MSL systems were constructed with dry weight ratios of sludge with 0%, 5%, 10%, and 20% (MSL 1, MSL 2, MSL 3, and MSL 4, respectively). The turtle aquaculture effluent had an average chemical oxygen demand (COD), ammonia nitrogen (NH4(+)-N) and total nitrogen (TN) concentration of 288.4, 213.4, and 252.0 mg/L, respectively. The COD/TN (C/N) ratio was 1.2. The results showed that the four MSL systems could effectively treat the COD, NH4(+)-N, and TN, and MSL 4 showed significantly improved NH4(+)-N removal efficiency, suggesting the potential of sludge addition to improve the turtle aquaculture effluent treatment. The average COD, TN, and NH4(+)-N removal efficiencies of MSL 4 were 70.3%, 66.5%, and 72.7%, respectively. To further interpret the contribution of microorganisms to the removal, the microbial community compositions and diversities of the four MSL systems were measured. Comparisons of the denaturing gradient gel electrophoresis (DGGE) profiles revealed that the amount of nitrifying bacteria and diversity in MSL 4 were higher than those in the other three systems. We concluded that adding 20% of sludge improved the NH4(+)-N removal and stability of the system for nitrification, due to the enrichment of the nitrifying bacteria in MSL 4.

Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture.

Science.gov (United States)

Bastos Gomes, G; Jerry, D R; Miller, T L; Hutson, K S

2017-05-01

Freshwater fish farming contributes to more than two-thirds of global aquaculture production. Parasitic ciliates are one of the largest causes of production loss in freshwater farmed fishes, with species from the genus Chilodonella being particularly problematic. While Chilodonella spp. include 'free-living' fauna, some species are involved in mortality events of fish, particularly in high-density aquaculture. Indeed, chilodonellosis causes major productivity losses in over 16 species of farmed freshwater fishes in more than 14 countries. Traditionally, Chilodonella species are identified based on morphological features; however, the genus comprises yet uncharacterized cryptic species, which indicates the necessity for molecular diagnostic methods. This review synthesizes current knowledge on the biology, ecology and geographic distribution of harmful Chilodonella spp. and examines pathological signs, diagnostic methods and treatments. Recent advances in molecular diagnostics and the ability to culture Chilodonella spp. in vitro will enable the development of preventative management practices and sustained freshwater fish aquaculture production. © 2016 John Wiley & Sons Ltd.

Environmental impact analysis of aquaculture in net cages in a ...

African Journals Online (AJOL)

Environmental impact analysis of aquaculture in net cages in a Brazilian water reservoir, based in zooplankton communities. Maria Cristina Crispim, Karla Patrícia Ponte Araújo, Hênio do Nascimento Melo Júnior ...

Efficiency of Different Integrated Agriculture Aquaculture Systems in the Red River Delta of Vietnam

Directory of Open Access Journals (Sweden)

Nguyen Van Huong

2018-02-01

Full Text Available Integrated Agriculture Aquaculture (IAA is characteristic with diversity of small-scale production systems in the Red River Delta, Vietnam where most integrated aquaculture systems are closely associated to the VAC model, an ecosystem production that three components: garden (V, pond (A and livestock pen (C are integrated. These VAC systems effectively use all the available land, air, water and solar energy resources, and also effectively recycle by-products and waste for providing diversified agricultural products to meet the complex nutritional demands of rural communities. The IAA systems are dynamic, diverse and subject to economic and environmental changes. By investigating 167 aquaculture households, the traditional VAC, New VAC, Animal Fish (AF and Commercial Fish (FS systems are identified as four existing IAA systems. This paper presents the main characteristics and economic efficiency of these IAA systems. The study’s results indicate clear evidence that the traditional VAC system and New VAC system are the most efficient and effective models. The findings of this study have shed light on the important role of integrated aquaculture systems to food security and economic development of households and local communities. The VAC systems are likely to propose for improving household food security and developing the local economy.

An ecosystem-based approach and management framework for the integrated evaluation of bivalve aquaculture impacts

DEFF Research Database (Denmark)

Cranford, Peter J.; Kamermans, Pauline; Krause, Gesche

2012-01-01

for bivalve aquaculture be based on a tiered indicator monitoring system that is structured on the principle that increased environmental risk requires increased monitoring effort. More than 1 threshold for each indicator would permit implementation of predetermined impact prevention and mitigation measures......An ecosystem-based approach to bivalve aquaculture management is a strategy for the integration of aquaculture within the wider ecosystem, including human aspects, in such a way that it promotes sustainable development, equity, and resilience of ecosystems. Given the linkage between social...... and ecological systems, marine regulators require an ecosystem-based decision framework that structures and integrates the relationships between these systems and facilitates communication of aquaculture–environment interactions and policy-related developments and decisions. The Drivers-Pressures-State Change-Impact-Response...

Technology Foresight in Emerging Maritime & Marine Economies

DEFF Research Database (Denmark)

Spaniol, Matthew Jon; Rohrbeck, René

. The technologies are organized to support innovation and the development of new business areas, and sustains discussion via an online portal. The upshot for technology developers is the organization of the technological landscape. The upshot for academics is the expanded horizon of emerging technologies...... for anticipatory projects, development efforts, and policy considerations. An early iteration of the Radar covers: • Renewable ocean energy • Seabed mining & offshore technology • Marine biotechnology & aquaculture • Specialized vessels & infrastructure • Servicing emerging maritime & offshore activities...

NUTRITIONAL VALUE AND METHODS OF THE TECHNOLOGICAL PROCESSING OF PELED (СOREGONUS PELED GMELIN (REVIEW

Directory of Open Access Journals (Sweden)

O. Nazarov

2016-06-01

Full Text Available Purpose. To investigate peled as a food product, raw material for processing and analyze traditional methods of its technological processing. Findings. The paper contains an analysis of the chemical composition of peled meat and its difference compared to other fish of pond aquaculture of Ukraine. According to the parameters of the biochemical composition of the meat of peled reared in the conditions of pond aquaculture, including: contents of fats, proteins, and moisture, belongs to the category of fish from medium to high fat content with medium protein content as well as to fish of increased nutritional value and assimilability based on water-protein, fat-protein, and water-fat balance, and based on amino-acid composition in percent, according to Score standard. Unlike cyprinids — objects of pond aquaculture, general indices of the biochemical composition and peculiarities of anatomical structure of peled as a coregonid representative, contribute to the formation of organoleptic features of native origin that are inherent to gourmet types of the products of traditional processing. It was found that unlike other coregonids, the biochemical indices of peled meat, which define the type and directions of its processing and its regime, first of all, the content of fat, protein, and moisture аre relatively stable for different age groups under conditions of pond aquaculture and they change less during the biological cycle. Main product requirements to the methods of technological processing of peled are summarized, namely: drying, smoking, salting. Full technological schemes of peled processing by traditional methods taking into account biochemical peculiarities of raw material and requirements for the finished product are presented and analyzed. Practical value. The summarized information is useful for further development of domestic aquaculture and processing. Different indices of biochemical composition and high output indices of peled meat

Analysis of economic and energy utilization aspects for waste heat aquaculture

Energy Technology Data Exchange (ETDEWEB)

Olszewski, M.; Wilson, J. V.

1978-01-01

A waste heat aquaculture system using extensive culture techniques to produce fin and shellfish is currently under investigation at the Oak Ridge National Laboratory. The system uses nutrients in waste water streams to grow algae and zooplankton which are fed to fish and clams. A tilapia polyculture association and the freshwater clam Corbicula are the animals cultured in the system. The investigations were performed to determine the economic feasibility of the system and examine energy utilization in the system. A net energy analysis was performed to identify the energy saving potential for the system. This analysis includes all energy costs (both direct and indirect) associated with building and operating the system. The results of the economic study indicated that fish production costs of $0.55/kg ($0.25/lb) were possible. This cost, however, depends upon the fish production rate and food conversion efficiency and could rise to as much as $1.65/kg ($0.75/lb). Clam production costs were found to be in the neighborhood of $0.37/kg of clam meat ($1.24/bushel). The energy utilization study results indicated that, when all energy costs are included, fish from the aquaculture system may require only 35% of the net energy now required for fish products from the ocean. However, the energy requirements also depend on system parameters and could be as large as the energy required for ocean caught products. Clams can be produced in the aquaculture system using only about 25% of the net energy required by traditional means. The results of the analysis indicate that the system appears to be economically feasible. They also indicate that significant energy savings are possible if waste heat aquaculture products replace ocean caught products.

The contribution of health technology assessment, health needs assessment, and health impact assessment to the assessment and translation of technologies in the field of public health genomics.

Science.gov (United States)

Rosenkötter, N; Vondeling, H; Blancquaert, I; Mekel, O C L; Kristensen, F B; Brand, A

2011-01-01

The European Union has named genomics as one of the promising research fields for the development of new health technologies. Major concerns with regard to these fields are, on the one hand, the rather slow and limited translation of new knowledge and, on the other hand, missing insights into the impact on public health and health care practice of those technologies that are actually introduced. This paper aims to give an overview of the major assessment instruments in public health [health technology assessment (HTA), health needs assessment (HNA) and health impact assessment (HIA)] which could contribute to the systematic translation and assessment of genomic health applications by focussing at population level and on public health policy making. It is shown to what extent HTA, HNA and HIA contribute to translational research by using the continuum of translational research (T1-T4) in genomic medicine as an analytic framework. The selected assessment methodologies predominantly cover 2 to 4 phases within the T1-T4 system. HTA delivers the most complete set of methodologies when assessing health applications. HNA can be used to prioritize areas where genomic health applications are needed or to identify infrastructural needs. HIA delivers information on the impact of technologies in a wider scope and promotes informed decision making. HTA, HNA and HIA provide a partly overlapping and partly unique set of methodologies and infrastructure for the translation and assessment of genomic health applications. They are broad in scope and go beyond the continuum of T1-T4 translational research regarding policy translation. Copyright © 2010 S. Karger AG, Basel.

Aquaculture investigations with nuclear energy techniques

International Nuclear Information System (INIS)

Heredia Salazar, Brunilda

1997-01-01

The culture of aquatic organisms, especially that of fishes under controlled conditions, up to their harvesting, processing, commercialization and consumption, has been pointed out as an activity that produces a lot of benefits, among them: the obtention high proteic valued food, the incorporation to the economy of lands not usefull for agriculture activities, the increment of fishing resources, the recycling of organic matter produced in the units, the regional development, the generation of employment, technologies and foreign currencies. Several research areas are identified that can be developed, using the nuclear technologies, for example in the reproduction, nutrition, diagnose and control of illnesses, environmental monitoring and quality certification of products. In the concerning to the Venezuelan aquaculture, investigations are required that need to use those techniques. For example: 1) Production of autochthonous inductive agents, by means of radioinmunoenssay (RIA), to determine the gonadotropines coming from the hypophysis of fish cultivated with the purpose of gathering the glands in its best moment, to generate the final maturation and spawn in autochthonous species. 2) Genetic improvement of cultivated species through the knowledge of the genetic load of different lines and breeds found in the natural means, and to achieve its maintenance to solve inbreeding problems, in autochthonous species aswell in as in exotic ones, by the use of marking techniques (ADE, RFLA and microsatellite techniques). 3) Nutritional and feeding studies of species under commertial culture, especially on the effect of the aflatoxins in the inputs or the portions, substances that influence in a negative way the aquatic nutrition. In this case, competitive immunoassays of enzymes bounded (ELISA) and radioinmunoessays. 4) Illness diagnose, by means of the ELISA kit, specifically of the more common illness in fishes cultivated in the country [es

Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae.

Science.gov (United States)

Nam, Bo-Hye; Kwak, Woori; Kim, Young-Ok; Kim, Dong-Gyun; Kong, Hee Jeong; Kim, Woo-Jin; Kang, Jeong-Ha; Park, Jung Youn; An, Cheul Min; Moon, Ji-Young; Park, Choul Ji; Yu, Jae Woong; Yoon, Joon; Seo, Minseok; Kim, Kwondo; Kim, Duk Kyung; Lee, SaetByeol; Sung, Samsun; Lee, Chul; Shin, Younhee; Jung, Myunghee; Kang, Byeong-Chul; Shin, Ga-Hee; Ka, Sojeong; Caetano-Anolles, Kelsey; Cho, Seoae; Kim, Heebal

2017-05-01

Abalones are large marine snails in the family Haliotidae and the genus Haliotis belonging to the class Gastropoda of the phylum Mollusca. The family Haliotidae contains only one genus, Haliotis, and this single genus is known to contain several species of abalone. With 18 additional subspecies, the most comprehensive treatment of Haliotidae considers 56 species valid [ 1 ]. Abalone is an economically important fishery and aquaculture animal that is considered a highly prized seafood delicacy. The total global supply of abalone has increased 5-fold since the 1970s and farm production increased explosively from 50 mt to 103 464 mt in the past 40 years. Additionally, researchers have recently focused on abalone given their reported tumor suppression effect. However, despite the valuable features of this marine animal, no genomic information is available for the Haliotidae family and related research is still limited. To construct the H . discus hannai genome, a total of 580-G base pairs using Illumina and Pacbio platforms were generated with 322-fold coverage based on the 1.8-Gb estimated genome size of H . discus hannai using flow cytometry. The final genome assembly consisted of 1.86 Gb with 35 450 scaffolds (>2 kb). GC content level was 40.51%, and the N50 length of assembled scaffolds was 211 kb. We identified 29 449 genes using Evidence Modeler based on the gene information from ab initio prediction, protein homology with known genes, and transcriptome evidence of RNA-seq. Here we present the first Haliotidae genome, H . discus hannai , with sequencing data, assembly, and gene annotation information. This will be helpful for resolving the lack of genomic information in the Haliotidae family as well as providing more opportunities for understanding gastropod evolution. © The Authors 2017. Published by Oxford University Press.

Aquaculture intérieure et adaptation aux changements climatiques ...

International Development Research Centre (IDRC) Digital Library (Canada)

Gender and the management of climate-related risks in northern Thailand. Papers. Risk aversion and emotions in the management of climate-related risks by fish farmers. Papers. Mainstreaming climate change into inland aquaculture policies in Thailand. Papers. Improving climate risk management as an adaptation ...

Economic Feasibility of Recirculating Aquaculture Systems in Pangasius Farming

NARCIS (Netherlands)

Pham, T.A.N.; Gielen-Meuwissen, M.P.M.; Le, T.C.; Verreth, J.A.J.; Bosma, R.H.; Oude Lansink, A.G.J.M.

2016-01-01

This study aims to analyze the economic feasibility of recirculating aquaculture systems (RAS) in pangasius farming in Vietnam. The study uses a capital budgeting approach and accounts for uncertainty in key parameters. Stochastic simulation is used to simulate the economic performance of medium and

Proximate analyses - Utilization of Marine Process Waste for Aquaculture Feeds

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Limited amounts of forage fish are available as an ingredient in feeds for the expanding aquaculture industry. Work is being conducted on a variety of underutilized...

Perspectives on Genetic and Genomic Technologies in an Academic Medical Center: The Duke Experience

Science.gov (United States)

Katsanis, Sara Huston; Minear, Mollie A.; Vorderstrasse, Allison; Yang, Nancy; Reeves, Jason W.; Rakhra-Burris, Tejinder; Cook-Deegan, Robert; Ginsburg, Geoffrey S.; Simmons, Leigh Ann

2015-01-01

In this age of personalized medicine, genetic and genomic testing is expected to become instrumental in health care delivery, but little is known about its actual implementation in clinical practice. Methods. We surveyed Duke faculty and healthcare providers to examine the extent of genetic and genomic testing adoption. We assessed providers’ use of genetic and genomic testing options and indications in clinical practice, providers’ awareness of pharmacogenetic applications, and providers’ opinions on returning research-generated genetic test results to participants. Most clinician respondents currently use family history routinely in their clinical practice, but only 18 percent of clinicians use pharmacogenetics. Only two respondents correctly identified the number of drug package inserts with pharmacogenetic indications. We also found strong support for the return of genetic research results to participants. Our results demonstrate that while Duke healthcare providers are enthusiastic about genomic technologies, use of genomic tools outside of research has been limited. Respondents favor return of research-based genetic results to participants, but clinicians lack knowledge about pharmacogenetic applications. We identified challenges faced by this institution when implementing genetic and genomic testing into patient care that should inform a policy and education agenda to improve provider support and clinician-researcher partnerships. PMID:25854543

Perspectives on Genetic and Genomic Technologies in an Academic Medical Center: The Duke Experience

Directory of Open Access Journals (Sweden)

Sara Huston Katsanis

2015-04-01

Full Text Available In this age of personalized medicine, genetic and genomic testing is expected to become instrumental in health care delivery, but little is known about its actual implementation in clinical practice. Methods. We surveyed Duke faculty and healthcare providers to examine the extent of genetic and genomic testing adoption. We assessed providers’ use of genetic and genomic testing options and indications in clinical practice, providers’ awareness of pharmacogenetic applications, and providers’ opinions on returning research-generated genetic test results to participants. Most clinician respondents currently use family history routinely in their clinical practice, but only 18 percent of clinicians use pharmacogenetics. Only two respondents correctly identified the number of drug package inserts with pharmacogenetic indications. We also found strong support for the return of genetic research results to participants. Our results demonstrate that while Duke healthcare providers are enthusiastic about genomic technologies, use of genomic tools outside of research has been limited. Respondents favor return of research-based genetic results to participants, but clinicians lack knowledge about pharmacogenetic applications. We identified challenges faced by this institution when implementing genetic and genomic testing into patient care that should inform a policy and education agenda to improve provider support and clinician-researcher partnerships.

Merging remotely sensed data, models and indicators for a sustainable development of coastal aquaculture in Algeria

Science.gov (United States)

Brigolin, Daniele; Venier, Chiara; Amine Taji, Mohamed; Lourguioui, Hichem; Mangin, Antoine; Pastres, Roberto

2014-05-01

Finfish cage farming is an economically relevant activity, which exerts pressures on coastal systems and thus require a science-based management, based on the Ecosystem Approach, in order to be carry out in a sustainable way. Within MEDINA project (EU 282977), ocean color data and models were used for estimating indicators of pressures of aquaculture installations along the north African coast. These indicators can provide important support for decision makers in the allocation of new zones for aquaculture, by taking into account the suitability of an area for this activity and minimizing negative environmental effects, thus enhancing the social acceptability of aquaculture. The increase in the number of farms represents a strategic objective for the Algerian food production sector, which is currently being supported by different national initiatives. The case-study presented in this work was carried out in the Gulf of Bejaia. Water quality for aquaculture was first screened based on ocean color CDOM data (http://www.globcolour.info/). The SWAN model was subsequently used to propagate offshore wave data and to derive wave height statistics. On this basis, sub-areas of the Gulf were ranked, according their optimality in respect to cage resistance and fish welfare requirements. At the three best sites an integrated aquaculture impact assessment model was therefore applied: this tool allows one to obtain a detailed representation of fish growth and population dynamics inside the rearing cages, and to simulate the deposition of uneaten food and faeces on the sediment and the subsequent mineralization of organic matter. This integrated model was used to produce a set of indicators of the fish cages environmental interaction under different scenarios of forcings (water temperature, feeding, currents). These model-derived indicators could usefully contribute to the implementation of the ecosystem approach for the management of aquaculture activities, also required by the

Antibiotic resistance profile of Pseudomonas aeruginosa isolated from aquaculture and abattoir environments in urban communities

Directory of Open Access Journals (Sweden)

Isoken Henrietta Igbinosa

2017-01-01

Full Text Available Objective: To characterize multiple antibiotic resistance profile of Pseudomonas aeruginosa from aquaculture and abattoir environments. Methods: Wastewater samples were obtained from the abattoir and aquaculture environments between May 2016 and July 2016 and analysed using standard phenotypic, biochemical and PCR-based methods. Results: The mean pseudomonads count ranged from (4 × 102 ± 1.01 to (2 × 104 ± 0.10 colony-forming unit/mL in the aquaculture environment and (3 × 103 ± 0.00 to (1 × 105 ± 1.00 colony-forming unit/mL in the abattoir environment. A total of 96 isolates of Pseudomonas aeruginosa confirmed by PCR were thereafter selected from both aquaculture and abattoir environments and further characterized for their antimicrobial susceptibility profile by adopting the disc diffusion method. High level of resistance was observed against the aminoglycosides [gentamycin 64/96 (66.67% and kanamycin 52/96 (54.17%], monobactams [aztreonam 76/96 (79.17%], carbapenems [meropenem 52/96 (54.17%], tetracyclines [tetracycline 72/96 (75.00%] and cephems [ceftazidime 72/96 (75.00% and cefuroxime 48/96 (50.00%]. Multiple antibiotic resistant index of the respective isolates ranged from 0.4 to 0.8 while multidrug resistant profile of the isolates revealed that 28 of the respective isolates were resistant to ceftazidime, cefuroxime, gentamycin, kanamycin, aztreonam which belongs to cephems, aminoglycosides and monobactam class of antimicrobials. Conclusions: Findings from the present study therefore underscores the need for effective monitoring of the abattoir and aquaculture environments as they could be the significant source for spreading antibiotic resistant bacteria within the environment.

Criminal Genomic Pragmatism: Prisoners' Representations of DNA Technology and Biosecurity

Science.gov (United States)

Machado, Helena; Silva, Susana

2012-01-01

Background. Within the context of the use of DNA technology in crime investigation, biosecurity is perceived by different stakeholders according to their particular rationalities and interests. Very little is known about prisoners' perceptions and assessments of the uses of DNA technology in solving crime. Aim. To propose a conceptual model that serves to analyse and interpret prisoners' representations of DNA technology and biosecurity. Methods. A qualitative study using an interpretative approach based on 31 semi-structured tape-recorded interviews was carried out between May and September 2009, involving male inmates in three prisons located in the north of Portugal. The content analysis focused on the following topics: the meanings attributed to DNA and assessments of the risks and benefits of the uses of DNA technology and databasing in forensic applications. Results. DNA was described as a record of identity, an exceptional material, and a powerful biometric identifier. The interviewees believed that DNA can be planted to incriminate suspects. Convicted offenders argued for the need to extend the criteria for the inclusion of DNA profiles in forensic databases and to restrict the removal of profiles. Conclusions. The conceptual model entitled criminal genomic pragmatism allows for an understanding of the views of prison inmates regarding DNA technology and biosecurity. PMID:22791960

Criminal Genomic Pragmatism: Prisoners' Representations of DNA Technology and Biosecurity

Directory of Open Access Journals (Sweden)

Helena Machado

2012-01-01

Full Text Available Background. Within the context of the use of DNA technology in crime investigation, biosecurity is perceived by different stakeholders according to their particular rationalities and interests. Very little is known about prisoners’ perceptions and assessments of the uses of DNA technology in solving crime. Aim. To propose a conceptual model that serves to analyse and interpret prisoners’ representations of DNA technology and biosecurity. Methods. A qualitative study using an interpretative approach based on 31 semi-structured tape-recorded interviews was carried out between May and September 2009, involving male inmates in three prisons located in the north of Portugal. The content analysis focused on the following topics: the meanings attributed to DNA and assessments of the risks and benefits of the uses of DNA technology and databasing in forensic applications. Results. DNA was described as a record of identity, an exceptional material, and a powerful biometric identifier. The interviewees believed that DNA can be planted to incriminate suspects. Convicted offenders argued for the need to extend the criteria for the inclusion of DNA profiles in forensic databases and to restrict the removal of profiles. Conclusions. The conceptual model entitled criminal genomic pragmatism allows for an understanding of the views of prison inmates regarding DNA technology and biosecurity.

Criminal genomic pragmatism: prisoners' representations of DNA technology and biosecurity.

Science.gov (United States)

Machado, Helena; Silva, Susana

2012-01-01

Within the context of the use of DNA technology in crime investigation, biosecurity is perceived by different stakeholders according to their particular rationalities and interests. Very little is known about prisoners' perceptions and assessments of the uses of DNA technology in solving crime. To propose a conceptual model that serves to analyse and interpret prisoners' representations of DNA technology and biosecurity. A qualitative study using an interpretative approach based on 31 semi-structured tape-recorded interviews was carried out between May and September 2009, involving male inmates in three prisons located in the north of Portugal. The content analysis focused on the following topics: the meanings attributed to DNA and assessments of the risks and benefits of the uses of DNA technology and databasing in forensic applications. DNA was described as a record of identity, an exceptional material, and a powerful biometric identifier. The interviewees believed that DNA can be planted to incriminate suspects. Convicted offenders argued for the need to extend the criteria for the inclusion of DNA profiles in forensic databases and to restrict the removal of profiles. The conceptual model entitled criminal genomic pragmatism allows for an understanding of the views of prison inmates regarding DNA technology and biosecurity.

Manual on the production and use of live food for aquaculture

National Research Council Canada - National Science Library

Lavens, P; Sorgeloos, Patrick

1996-01-01

.... The manual is divided into different sections according to the major groups of live food organisms used in aquaculture, namely micro-algae, rotifers, Artemia, natural zooplankton, and copepods...

Aquaculture and feeding ecology: Feeding behaviour in turbot larvae

DEFF Research Database (Denmark)

Bruno, Eleonora

capture success. This thesis is part of a large international project aimed at improving the rearing techniques of high value fish species larvae fed with calanoid copepods, their natural prey, to achieve high levels of survival and quality. In fact, fish aquaculture is becoming increasingly important...

Aquaculture: a promising solution for food insecurity, poverty and ...

African Journals Online (AJOL)

With increasing food production challenges such as dwindling capture fisheries and impacts of climate change becoming more eminent, solutions to food insecurity and malnutrition in Kenya must bring about quick results in food availability by stimulating more own-food production. Aquaculture has so far been recognized ...

Comments on the current status of aquaculture in heated effluents in North America

International Nuclear Information System (INIS)

Ayles, G.B.

1976-01-01

At the current rate of increase the world demand for fish protein will soon far exceed the supply. The culture of aquatic organisms in low-grade waste heat could be a significant source of animal protein. There are at present thriving trout culture and catfish culture industries in North America. There are a number of small-scale research and commercial aquaculture projects currently in operation and numerous studies have been carried out. However, the knowledge gained has not had a significant impact on waste heat aquaculture development. (author)

A Monitoring and Control System for Aquaculture via Wireless Network and Android Platform

Directory of Open Access Journals (Sweden)

Juan Huan

2014-04-01

Full Text Available Web applications, databases and advanced mobile platform can facilitate real-time data acquisition for effective monitoring on intelligent agriculture. To improve facilities for aquaculture production automation and efficient, this paper presents an application for wireless network and Android platform that interacts with an advanced control system based on Apache, SQL Server, Java, to collect and monitor variables applied in aquaculture. The test and application shows that is stable, high price-performance ratio, good mobility and easy to operate, It has a strong practicality and application prospects.

Effects of geoduck (Panopea generosa) aquaculture on resident and transient macrofauna communities of Puget Sound, Washington, USA

Science.gov (United States)

Mcdonald, P. Sean; Galloway, Aaron W.E.; McPeek, Kathleen C.; VanBlaricom, Glenn R.

2015-01-01

In Washington state, commercial culture of geoducks (Panopea generosa) involves large-scale out-planting of juveniles to intertidal habitats, and installation of PVC tubes and netting to exclude predators and increase early survival. Structures associated with this nascent aquaculture method are examined to determine whether they affect patterns of use by resident and transient macrofauna. Results are summarized from regular surveys of aquaculture operations and reference beaches in 2009 to 2011 at three sites during three phases of culture: (1) pregear (-geoducks, -structure), (2) gear present (+geoducks, +structures), and (3) postgear (+geoducks, -structures). Resident macroinvertebrates (infauna and epifauna) were sampled monthly (in most cases) using coring methods at low tide during all three phases. Differences in community composition between culture plots and reference areas were examined with permutational analysis of variance and homogeneity of multivariate dispersion tests. Scuba and shoreline transect surveys were used to examine habitat use by transient fish and macroinvertebrates. Analysis of similarity and complementary nonmetric multidimensional scaling were used to compare differences between species functional groups and habitat type during different aquaculture phases. Results suggest that resident and transient macrofauna respond differently to structures associated with geoduck aquaculture. No consistent differences in the community of resident macrofauna were observed at culture plots or reference areas at the three sites during any year. Conversely, total abundance of transient fish and macroinvertebrates were more than two times greater at culture plots than reference areas when aquaculture structures were in place. Community composition differed (analysis of similarity) between culture and reference plots during the gear-present phase, but did not persist to the next farming stage (postgear). Habitat complexity associated with shellfish

Predator in the Pool? A Quantitative Evaluation of Non-indexed Open Access Journals in Aquaculture Research

Directory of Open Access Journals (Sweden)

Jeff C. Clements

2018-03-01

Full Text Available Predatory open access (OA journals can be defined as non-indexed journals that exploit the gold OA model for profit, often spamming academics with questionable e-mails promising rapid OA publication for a fee. In aquaculture—a rapidly growing and highly scrutinized field—the issue of such journals remains undocumented. We employed a quantitative approach to determine whether attributes of scientific quality and rigor differed between OA aquaculture journals not indexed in reputable databases and well-established, indexed journals. Using a Google search, we identified several non-indexed OA journals, gathered data on attributes of these journals and articles therein, and compared these data to well-established aquaculture journals indexed in quality-controlled bibliometric databases. We then used these data to determine if non-indexed journals were likely predatory OA journals and if they pose a potential threat to aquaculture research. On average, non-indexed OA journals published significantly fewer papers per year, had cheaper fees, and were more recently established than indexed journals. Articles in non-indexed journals were, on average, shorter, had fewer authors and references, and spent significantly less time in peer review than their indexed counterparts; the proportion of articles employing rigorous statistical analyses was also lower for non-indexed journals. Additionally, articles in non-indexed journals were more likely to be published by scientists from developing nations. Worryingly, non-indexed journals were more likely to be found using a Google search, and their articles superficially resembled those in indexed journals. These results suggest that the non-indexed aquaculture journals identified herein are likely predatory OA journals and pose a threat to aquaculture research and the public education and perception of aquaculture. Several points of reference from this study, in combination, may help scientists and the public

A Layman's Guide to Geothermal Aquaculture

Energy Technology Data Exchange (ETDEWEB)

Smith, Kenan C.

1981-01-01

The following paper is designed as an aid to anyone contemplating a venture into commercially raising giant freshwater prawns, Macrobrachium rosenbergii. Oregon Institute of Technology has been actively involved in a research program to determine the feasibility of such a venture and results to date have been very encouraging. This aquaculture research was initiated in 1975 and was developed as an effort to utilize excess energy from the school’s geothermal heating system. Therefore, most of the information gathered here, will apply to flow-through systems which use geothermal water to maintain a suitable environment for the animals. A study of the market potential for freshwater prawns has been conducted and a favorable response received from wholesale distributors in the Pacific Northwest. Not only is a good market available, but distributors have suggested paying from $4.50 to $5.00 per pound for whole prawns in the size category of 16 to 20 tails to the pound, for a constant fresh supply. By maintaining constant temperatures of 27 degrees Celsius (80 degrees Fahrenheit) ± 1 degree Celsius in our research ponds, we have been able to produce this size prawn in 6 to 8 months.

Dynamic ecological-economic modeling approach for management of shellfish aquaculture

CSIR Research Space (South Africa)

Nobre, AM

2008-02-01

Full Text Available The objective of this report is to conceptualize ecological and economic interactions in mariculture; to implement a dynamic ecological-economic model in order to: simulate the socio-economics of aquaculture production, simulate its effects...

Macroalgal biomonitors of trace metal contamination in acid sulfate soil aquaculture ponds.

Science.gov (United States)

Gosavi, K; Sammut, J; Gifford, S; Jankowski, J

2004-05-25

Earthen shrimp aquaculture ponds are often impacted by acid sulfate soils (ASS), typically resulting in increased disease and mortality of cultured organisms. Production losses have been attributed to either low pH or to elevated concentrations of toxic metals, both direct products of pyrite oxidation in ASS. The standard farm management practice to minimise effects of pyrite oxidation is to maintain pH of pond waters above 5, based on the assumption that dissolved metal bioavailability is negligible at this pH. This study aimed to test the validity of this assumption, and therefore elucidate a possible role of toxic heavy metals in observed decreases in farm productivity. Metal bioaccumulation in four genera of macroalgae, Ulva sp., Enteromorpha sp., Cladophora sp. and Chaetomorpha sp., sampled from ASS-affected shrimp aquaculture ponds were measured using inductively coupled plasma-optical emission spectroscopy (ICP-OES) to assess the relative bioavailability of dissolved metals within the system. Results showed that all four genera of macroalgae accumulated appreciable quantities of Fe, Al, Zn, Cd, Cu, As and Pb. Iron and Al, the most common metals mobilised from ASS, were both accumulated in all algal genera to concentrations three orders of magnitude greater than all other metals analysed. These findings indicate that dissolved heavy metals are indeed bioavailable within the aquaculture pond system. A literature search of heavy metal bioaccumulation by these algal genera revealed concentrations recorded in this study are comparable to highly contaminated environments, such as those exposed to urban, industrial and mining pollution. The results of this study indicate that dissolved metal bioavailability in many earthen shrimp aquaculture ponds may be higher than previously thought.

Coastal aquaculture development in eastern Africa and the Western Indian Ocean: prospects and problems for food security and local economies.

Science.gov (United States)

Rönnback, Patrik; Bryceson, Ian; Kautsky, Nils

2002-12-01

This paper reviews the experience and status of coastal aquaculture of seaweeds, mollusks, fish and crustaceans in eastern Africa and the islands of the western Indian Ocean. In many respects, coastal aquaculture is still in its infancy in the region, and there is a pressing need to formulate development strategies aimed at improving the income and assuring the availability of affordable protein to coastal communities. This paper also draws from positive and negative experiences in other parts of the world. The requirements of feed and fry, and the conversion of mangroves are used to illustrate how some aquaculture activities constitute a net loss to global seafood production. The paper presents both general and specific sustainability guidelines based on the acknowledgement of aquaculture as an ecological process. It is concluded that without clear recognition of its dependence on natural ecosystems, the aquaculture industry is unlikely to develop to its full potential in the region.

The Rising Tide of Antimicrobial Resistance in Aquaculture: Sources, Sinks and Solutions.

Science.gov (United States)

Watts, Joy E M; Schreier, Harold J; Lanska, Lauma; Hale, Michelle S

2017-06-01

As the human population increases there is an increasing reliance on aquaculture to supply a safe, reliable, and economic supply of food. Although food production is essential for a healthy population, an increasing threat to global human health is antimicrobial resistance. Extensive antibiotic resistant strains are now being detected; the spread of these strains could greatly reduce medical treatment options available and increase deaths from previously curable infections. Antibiotic resistance is widespread due in part to clinical overuse and misuse; however, the natural processes of horizontal gene transfer and mutation events that allow genetic exchange within microbial populations have been ongoing since ancient times. By their nature, aquaculture systems contain high numbers of diverse bacteria, which exist in combination with the current and past use of antibiotics, probiotics, prebiotics, and other treatment regimens-singularly or in combination. These systems have been designated as "genetic hotspots" for gene transfer. As our reliance on aquaculture grows, it is essential that we identify the sources and sinks of antimicrobial resistance, and monitor and analyse the transfer of antimicrobial resistance between the microbial community, the environment, and the farmed product, in order to better understand the implications to human and environmental health.

Biogeochemical ecology of aquaculture ponds

International Nuclear Information System (INIS)

Weisburd, R.S.J.

1988-01-01

Two methods to determine rates of organic matter production and consumption were applied in shrimp aquaculture ponds. Several questions were posed: can net rates of organic matter production and consumption be determined accurately through application of dissolved inorganic carbon (DIC) mass balance in a pond with high advective through-put? Are organically loaded aquaculture ponds autotrophic? How do rates of organic production vary temporally? Are there diurnal changes in respiration rates? Four marine ponds in Hawaii have been evaluated for a 53 day period through the use of geochemical mass balances. All fluxes of DIC into and out of the ponds were considered. DIC was calculated from hourly pH measurements and weekly alkalinity measurements. Average uptake of DIC from the pond water, equivalent to net community production, revealed net autotrophy in all cases. Hourly and longer period variations in organic matter production rates were examined. The daily cycle dominated the variation in rates of net community production. Maximal rates of net community production were maintained for four to six hours starting in mid-morning. Respiration rates decreased rapidly during the night in two of the ponds and remained essentially constant in the others. A similar pattern of decreasing respiration at night was seen in freshwater shrimp ponds which were studied with incubations. A new method involving isotope dilution of 14 C-labeled DIC was used to measure respiration rates in light and dark bottles. This method is an inexpensive and convenient procedure which should also be useful in other environments. The incubations demonstrated that plankton respiration rates peak at or soon after solar noon and vary over the course of the day by about a factor of two

Probiotics as beneficial microbes in aquaculture: an update on their multiple modes of action: a review.

Science.gov (United States)

Zorriehzahra, Mohammad Jalil; Delshad, Somayeh Torabi; Adel, Milad; Tiwari, Ruchi; Karthik, K; Dhama, Kuldeep; Lazado, Carlo C

2016-12-01

Wide and discriminate use of antibiotics has resulted in serious biological and ecological concerns, especially the emergence of antibiotic resistance. Probiotics, known as beneficial microbes, are being proposed as an effective and eco-friendly alternative to antibiotics. They were first applied in aquaculture species more than three decades ago, but considerable attention had been given only in the early 2000s. Probiotics are defined as live or dead, or even a component of the microorganisms that act under different modes of action in conferring beneficial effects to the host or to its environment. Several probiotics have been characterized and applied in fish and a number of them are of host origin. Unlike some disease control alternatives being adapted and proposed in aquaculture where actions are unilateral, the immense potential of probiotics lies on their multiple mechanisms in conferring benefits to the host fish and the rearing environment. The staggering number of probiotics papers in aquaculture highlights the multitude of advantages from these microorganisms and conspicuously position them in the dynamic search for health-promoting alternatives for cultured fish. This paper provides an update on the use of probiotics in finfish aquaculture, particularly focusing on their modes of action. It explores the contemporary understanding of their spatial and nutritional competitiveness, inhibitory metabolites, environmental modification capability, immunomodulatory potential and stress-alleviating mechanism. This timely update affirms the importance of probiotics in fostering sustainable approaches in aquaculture and provides avenues in furthering its research and development.

Review of the RNA Interference Pathway in Molluscs Including Some Possibilities for Use in Bivalves in Aquaculture

Directory of Open Access Journals (Sweden)

Leigh Owens

2015-03-01

Full Text Available Generalised reviews of RNA interference (RNAi in invertebrates, and for use in aquaculture, have taken for granted that RNAi pathways operate in molluscs, but inspection of such reviews show little specific evidence of such activity in molluscs. This review was to understand what specific research had been conducted on RNAi in molluscs, particularly with regard to aquaculture. There were questions of whether RNAi in molluscs functions similarly to the paradigm established for most eukaryotes or, alternatively, was it more similar to the ecdozoa and how RNAi may relate to disease control in aquaculture? RNAi in molluscs appears to have been only investigated in about 14 species, mostly as a gene silencing phenomenon. We can infer that microRNAs including let-7 are functional in molluscs. The genes/proteins involved in the actual RNAi pathways have only been rudimentarily investigated, so how homologous the genes and proteins are to other metazoa is unknown. Furthermore, how many different genes for each activity in the RNAi pathway are also unknown? The cephalopods have been greatly overlooked with only a single RNAi gene-silencing study found. The long dsRNA-linked interferon pathways seem to be present in molluscs, unlike some other invertebrates and could be used to reduce disease states in aquaculture. In particular, interferon regulatory factor genes have been found in molluscs of aquacultural importance such as Crassostrea, Mytilus, Pinctada and Haliotis. Two possible aquaculture scenarios are discussed, zoonotic norovirus and ostreid herpesvirus 1 to illustrate the possibilities. The entire field of RNAi in molluscs looks ripe for scientific exploitation and practical application.

Potential for use of condenser cooling waters from fossil fuel and nuclear power generating stations for freshwater aquaculture in cold climates

International Nuclear Information System (INIS)

Armstrong, G.C.

1976-01-01

Some limiting factors to the future development of freshwater aquaculture are considered. The most important of these are the need for new and improved technology for the production of better quality products at lower cost and for the promotion and establishment of new markets. The use of relatively small amounts of heated effluent water from power generating stations to optimize water temperatures is one feasible method for increasing growth and lowering the cost of production. (author)

A first generation BAC-based physical map of the rainbow trout genome

Directory of Open Access Journals (Sweden)

Thorgaard Gary H

2009-10-01

Full Text Available Abstract Background Rainbow trout (Oncorhynchus mykiss are the most-widely cultivated cold freshwater fish in the world and an important model species for many research areas. Coupling great interest in this species as a research model with the need for genetic improvement of aquaculture production efficiency traits justifies the continued development of genomics research resources. Many quantitative trait loci (QTL have been identified for production and life-history traits in rainbow trout. A bacterial artificial chromosome (BAC physical map is needed to facilitate fine mapping of QTL and the selection of positional candidate genes for incorporation in marker-assisted selection (MAS for improving rainbow trout aquaculture production. This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species. Results The physical map was constructed from DNA fingerprinting of 192,096 BAC clones using the 4-color high-information content fingerprinting (HICF method. The clones were assembled into physical map contigs using the finger-printing contig (FPC program. The map is composed of 4,173 contigs and 9,379 singletons. The total number of unique fingerprinting fragments (consensus bands in contigs is 1,185,157, which corresponds to an estimated physical length of 2.0 Gb. The map assembly was validated by 1 comparison with probe hybridization results and agarose gel fingerprinting contigs; and 2 anchoring large contigs to the microsatellite-based genetic linkage map. Conclusion The production and validation of the first BAC physical map of the rainbow trout genome is described in this paper. We are currently integrating this map with the NCCCWA genetic map using more than 200 microsatellites isolated from BAC end sequences and by identifying BACs that harbor more than 300 previously mapped markers. The availability of an integrated physical and genetic map will enable detailed comparative genome

The Use of Garlic (Allium sativum as a Growth Promoter in Aquaculture

Directory of Open Access Journals (Sweden)

Suat Dikel

2015-06-01

Full Text Available The wide-ranging use of antibiotics and medicaments has resulted in chemical residue and resistant pathogens in cured fish. Chemical residue not only pollutes the environment, but also threatens consumer’s health. On the contrary, garlic as a well-known natural antibiotic that causes no environmental or physical side effects has shown to be effective for the treatment of many diseases in humans and animals. In aquaculture applications, garlic promotes growth, improves the immune system, stimulates appetite, and reinforces the control of fungal and bacterial pathogens. This review emphasis on the application of garlic in promotes of fish growth and the expectations of using garlic arrangements in aquaculture.

An ecosystem-based approach and management framework for the integrated evaluation of bivalve aquaculture impacts

OpenAIRE

Cranford, Peter J.; Kamermans, Pauline; Krause, Gesche; Mazurie, Joseph; Buck, Bela H.; Dolmer, Per; Fraser, David; Van Nieuwenhove, Kris; O'Beirn, Francis X.; Sanchez-mata, Adoracion; Thorarinsdottir, Gudrun G.; Strand, Oivind

2012-01-01

An ecosystem-based approach to bivalve aquaculture management is a strategy for the integration of aquaculture within the wider ecosystem, including human aspects, in such a way that it promotes sustainable development, equity, and resilience of ecosystems. Given the linkage between social and ecological systems, marine regulators require an ecosystem-based decision framework that structures and integrates the relationships between these systems and facilitates communication of aquaculture–en...

Aquaculture intérieure et adaptation aux changements climatiques ...

International Development Research Centre (IDRC) Digital Library (Canada)

Risk aversion and emotions in the management of climate-related risks by fish farmers. IDL-56181.pdf. Papers. Climate-related risks to cage aquaculture in the reservoirs of Northern Thailand. IDL-56141.pdf. Papers. Weighing Costs, Weathering Risks: Adaptive Strategies of Fish Farmers Facing Multiple Risks in Northern ...

Small-scale Aquaculture to Strengthen Food Security in Cambodia ...

International Development Research Centre (IDRC) Digital Library (Canada)

Small-scale Aquaculture to Strengthen Food Security in Cambodia (CIFSRF) ... for their families' consumption in the same ponds as large fish, which can be sold for income. ... The project also studies opportunities to scale up the model for broader use ... Assessing improvements in nutrition outcomes following agricultural ...

Evaluation on Biofilter in Recirculating Integrated Multi-Trophic Aquaculture

Directory of Open Access Journals (Sweden)

S. Sumoharjo

2013-06-01

Full Text Available Integrated multi-trophic aquaculture pays more attention as a bio-integrated food production system that serves as a model of sustainable aquaculture, minimizes waste discharge, increases diversity and yields multiple products. The objectives of this research were to analyze the efficiency of total ammonia nitrogen biofiltration and its effect on carrying capacity of fish rearing units. Pilot-scale bioreactor was designed with eight run-raceways (two meters of each that assembled in series. Race 1-3 were used to stock silky worm (Tubifex sp as detrivorous converter, then race 4-8 were used to plant three species of leaf-vegetable as photoautotrophic converters, i.e; spinach (Ipomoea reptana, green mustard (Brassica juncea and basil (Ocimum basilicum. The three plants were placed in randomized block design based on water flow direction. Mass balance of nutrient analysis, was applied to figure out the efficiency of bio-filtration and its effect on carrying capacity of rearing units. The result of the experiment showed that 86.5 % of total ammonia nitrogen removal was achieved in 32 days of culturing period. This efficiency able to support the carrying capacity of the fish tank up to 25.95 kg/lpm with maximum density was 62.69 kg/m3 of fish biomass productionDoi: http://dx.doi.org/10.12777/ijse.4.2.2013.80-85 [How to cite this article: Sumoharjo, S.  and Maidie, A. (2013. Evaluation on Biofilter in Recirculating Integrated Multi-Trophic Aquaculture.  International Journal of  Science and Engineering, 4(2,80-85. Doi: http://dx.doi.org/10.12777/ijse.4.2.2013.80-85

Green and technical efficient growth in Danish fresh water aquaculture

DEFF Research Database (Denmark)

Nielsen, Rasmus

2011-01-01

growth can be achieved by introducing new environmentally friendly water purification systems in Danish fresh water aquaculture. Data Envelopment Analysis is used to investigate whether different water purification systems and farm size influence technical efficiency. The empirical results indicate...

Assessing stakeholder's experience and sensitivity on key issues for the economic growth of organic aquaculture production

DEFF Research Database (Denmark)

Lembo, Giuseppe; Jokumsen, Alfred; Spedicato, Maria Teresa

2018-01-01

expressed by the participants revealed both competence and awareness, despite the complexity of the subject. Several ideas and useful suggestions emerged regarding unresolved technical issues. In addition, the need for a targeted communication strategy on the quality of organic aquaculture products...... and the necessity of fostering European/national programs to support the production and marketing of organic aquaculture products were highlighted...

Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser | Informatics Technology for Cancer Research (ITCR)

Science.gov (United States)

The Cancer Analysis Virtual Machine (CAVM) project will leverage cloud technology, the UCSC Cancer Genomics Browser, and the Galaxy analysis workflow system to provide investigators with a flexible, scalable platform for hosting, visualizing and analyzing their own genomic data.

Salmon lice – impact on wild salmonids and salmon aquaculture

Science.gov (United States)

Torrissen, O; Jones, S; Asche, F; Guttormsen, A; Skilbrei, O T; Nilsen, F; Horsberg, T E; Jackson, D

2013-01-01

Salmon lice, Lepeophtheirus salmonis, are naturally occurring parasites of salmon in sea water. Intensive salmon farming provides better conditions for parasite growth and transmission compared with natural conditions, creating problems for both the salmon farming industry and, under certain conditions, wild salmonids. Salmon lice originating from farms negatively impact wild stocks of salmonids, although the extent of the impact is a matter of debate. Estimates from Ireland and Norway indicate an odds ratio of 1.1:1-1.2:1 for sea lice treated Atlantic salmon smolt to survive sea migration compared to untreated smolts. This is considered to have a moderate population regulatory effect. The development of resistance against drugs most commonly used to treat salmon lice is a serious concern for both wild and farmed fish. Several large initiatives have been taken to encourage the development of new strategies, such as vaccines and novel drugs, for the treatment or removal of salmon lice from farmed fish. The newly sequenced salmon louse genome will be an important tool in this work. The use of cleaner fish has emerged as a robust method for controlling salmon lice, and aquaculture production of wrasse is important towards this aim. Salmon lice have large economic consequences for the salmon industry, both as direct costs for the prevention and treatment, but also indirectly through negative public opinion. PMID:23311858

A comparison of Asian aquaculture products using statistically supported LCA

NARCIS (Netherlands)

Henriksson, P.J.G.; Rico, A.; Zhang, W.; Al-Nahid, A.; Newton, R.; Phan, L.T.; Zhang, Z.; Jaithiang, J.; Dao, H.M.; Phu, T.M.; Little, D.C.; Murray, F.J.; Satapornvanit, K.; Liu, L.; Liu, Q.; Haque, M.M.; Kruijssen, F.; de Snoo, G.R.; Heijungs, R.; van Bodegom, P.

2015-01-01

We investigated aquaculture production of Asian tiger shrimp, whiteleg shrimp, giant river prawn, tilapia, and pangasius catfish in Bangladesh, China, Thailand, and Vietnam by using life cycle assessments (LCAs), with the purpose of evaluating the comparative eco-efficiency of producing different

Dispersal and assimilation of an aquaculture waste subsidy in a low productivity coastal environment.

Science.gov (United States)

White, C A; Nichols, P D; Ross, D J; Dempster, T

2017-07-15

To understand dispersal and assimilation of aquaculture waste subsidies in a naturally low-productivity environment, we applied a novel, rapid transmethylation technique to analyse sediment and biota fatty acid composition. This technique was initially validated at Atlantic salmon farms in Macquarie Harbour, Australia, where sediments were collected at farm and control locations. Subsequently, sediment, benthic polychaete and zooplankton were sampled at sites 0, 50, 250, 500 and 1000m distant from multiple cages. Results demonstrated an acute deposition zone up to 50m from cages and a diffuse zone extending 500m from cages. Changes in sediment concentration of linoleic acid, oleic acid and total fatty acids were effective tracers of farm deposition. Bacterial biomarkers indicated that aquaculture waste stimulates bacterial productivity in sediments, with elevated biomarker concentrations also detected in benthic polychaetes. Overall, fatty acid analysis was a sensitive technique to characterize the benthic footprint of aquaculture influence. Copyright © 2017 Elsevier Ltd. All rights reserved.

From Genomics to Gene Therapy: Induced Pluripotent Stem Cells Meet Genome Editing.

Science.gov (United States)

Hotta, Akitsu; Yamanaka, Shinya

2015-01-01

The advent of induced pluripotent stem (iPS) cells has opened up numerous avenues of opportunity for cell therapy, including the initiation in September 2014 of the first human clinical trial to treat dry age-related macular degeneration. In parallel, advances in genome-editing technologies by site-specific nucleases have dramatically improved our ability to edit endogenous genomic sequences at targeted sites of interest. In fact, clinical trials have already begun to implement this technology to control HIV infection. Genome editing in iPS cells is a powerful tool and enables researchers to investigate the intricacies of the human genome in a dish. In the near future, the groundwork laid by such an approach may expand the possibilities of gene therapy for treating congenital disorders. In this review, we summarize the exciting progress being made in the utilization of genomic editing technologies in pluripotent stem cells and discuss remaining challenges toward gene therapy applications.

Prevalence of antimicrobial resistance of non-typhoidal Salmonella serovars in retail aquaculture products.

Science.gov (United States)

Zhang, Jianmin; Yang, Xiaowei; Kuang, Dai; Shi, Xianming; Xiao, Wenjia; Zhang, Jing; Gu, Zhen; Xu, Xuebin; Meng, Jianghong

2015-10-01

Aquaculture products can become sources of Salmonella by exposure to contaminated water or through processing practices, thus representing a public health hazard. A study was conducted on Salmonella contamination in aquaculture products sampled from marketplaces and retailers in Shanghai, China. A total of 730 samples (including fish, shellfish, bullfrog, clam, shrimp and others) were obtained from 2006 to 2011. Among them, 217 (29.7%) were positive for Salmonella. Thirty-eight serovars were identified in the 217 Salmonella isolates. The most prevalent were Salmonella Aberdeen (18.4%), S. Wandsworth (12.0%), S. Thompson (9.2%), S. Singapore (5.5%), S. Stanley (4.6%), S. Schwarzengrund (4.6%), S. Hvittingfoss (4.1%) and S. Typhimurium (4.1%). Many resistant isolates were detected, with 69.6% resistant to at least one antimicrobial drug. We observed high resistance to sulfonamides (56.5%), tetracycline (34.1%), streptomycin (28.6%), ampicillin (23.5%) and nalidixic acid (21.2%). Lower levels of resistance were found for gentamicin (3.2%), ciprofloxacin (2.3%), ceftiofur (1.3%), cefotaxime (0.9%), ceftazidime (0.5%) and cefepime (0.5%). A total of 43.3% of the Salmonella isolates were multidrug-resistant and 44 different resistance patterns were found. This study provided data on the prevalence, serovars and antimicrobial resistance of Salmonella from retail aquaculture products in Shanghai, and indicated the need for monitoring programs for microbiologic safety in such projects and for more prudent drug use in aquaculture production in order to reduce the risk of development and spread of antimicrobial resistance. Copyright © 2015 Elsevier B.V. All rights reserved.

Use of veterinary medicijnes, feed additives and probiotics in four major internationally traded aquaculture species farmed in Asia

NARCIS (Netherlands)

Rico, A.; Tran, M.; Satopornvanit, K.; Jiang, M.; Shahabiddin, A.M.; Henriksson, P.J.G.; Brink, van den P.J.

2013-01-01

Antimicrobials, parasiticides, feed additives and probiotics are used in Asian aquaculture to improve the health status of the cultured organisms and to prevent or treat disease outbreaks. Detailed information on the use of such chemicals in Asian aquaculture is limited, but of crucial importance

Genetic architecture of sex determination in fish: Applications to sex ratio control in aquaculture

Directory of Open Access Journals (Sweden)

Paulino eMartínez

2014-09-01

Full Text Available Controlling the sex ratio is essential in finfish farming. A balanced sex ratio is usually good for broodstock management, since it enables to develop appropriate breeding schemes. However, in some species the production of monosex populations is desirable because the existence of sexual dimorphism, primarily in growth or first time of sexual maturation, but also in color or shape, can render one sex more valuable. The knowledge of the genetic architecture of sex determination (SD is convenient for controlling sex ratio and for the implementation of breeding programs. Unlike mammals and birds, which show highly conserved master genes that control a conserved genetic network responsible for gonad differentiation (GD, a huge diversity of SD mechanisms has been reported in fish. Despite theory predictions, more than one gene is in many cases involved in fish SD and genetic differences have been observed in the GD network. Environmental factors also play a relevant role and epigenetic mechanisms are becoming increasingly recognized for the establishment and maintenance of the GD pathways. Although major genetic factors are frequently involved in fish SD, these observations strongly suggest that SD in this group resembles a complex trait. Accordingly, the application of quantitative genetics combined with genomic tools is desirable to address its study and in fact, when applied, it has frequently demonstrated a multigene trait interacting with environmental factors in model and cultured fish species. This scenario has notable implications for aquaculture and, depending upon the species, from chromosome manipulation or environmental control techniques up to classical selection or marker assisted selection programs, are being applied. In this review, we selected four relevant species or fish groups to illustrate this diversity and hence the technologies that can be used by the industry for the control of sex ratio: turbot and European sea bass, two

phiGENOME: an integrative navigation throughout bacteriophage genomes.

Science.gov (United States)

Stano, Matej; Klucar, Lubos

2011-11-01

phiGENOME is a web-based genome browser generating dynamic and interactive graphical representation of phage genomes stored in the phiSITE, database of gene regulation in bacteriophages. phiGENOME is an integral part of the phiSITE web portal (http://www.phisite.org/phigenome) and it was optimised for visualisation of phage genomes with the emphasis on the gene regulatory elements. phiGENOME consists of three components: (i) genome map viewer built using Adobe Flash technology, providing dynamic and interactive graphical display of phage genomes; (ii) sequence browser based on precisely formatted HTML tags, providing detailed exploration of genome features on the sequence level and (iii) regulation illustrator, based on Scalable Vector Graphics (SVG) and designed for graphical representation of gene regulations. Bringing 542 complete genome sequences accompanied with their rich annotations and references, makes phiGENOME a unique information resource in the field of phage genomics. Copyright © 2011 Elsevier Inc. All rights reserved.

The Contribution of Health Technology Assessment, Health Needs Assessment, and Health Impact Assessment to the Assessment and Translation of Technologies in the Field of Public Health Genomics

DEFF Research Database (Denmark)

Rosenkotter, N.; Vondeling, H.; Blancquaert, I.

2011-01-01

contribute to the systematic translation and assessment of genomic health applications by focussing at population level and on public health policy making. It is shown to what extent HTA, HNA and HIA contribute to translational research by using the continuum of translational research (T1-T4) in genomic...... into the impact on public health and health care practice of those technologies that are actually introduced. This paper aims to give an overview of the major assessment instruments in public health [ health technology assessment (HTA), health needs assessment (HNA) and health impact assessment (HIA)] which could...... medicine as an analytic framework. The selected assessment methodologies predominantly cover 2 to 4 phases within the T1-T4 system. HTA delivers the most complete set of methodologies when assessing health applications. HNA can be used to prioritize areas where genomic health applications are needed...

New transgenic models of Parkinson's disease using genome editing technology.

Science.gov (United States)

Cota-Coronado, J A; Sandoval-Ávila, S; Gaytan-Dávila, Y P; Diaz, N F; Vega-Ruiz, B; Padilla-Camberos, E; Díaz-Martínez, N E

2017-11-28

Parkinson's disease (PD) is the second most common neurodegenerative disorder. It is characterised by selective loss of dopaminergic neurons in the substantia nigra pars compacta, which results in dopamine depletion, leading to a number of motor and non-motor symptoms. In recent years, the development of new animal models using nuclease-based genome-editing technology (ZFN, TALEN, and CRISPR/Cas9 nucleases) has enabled the introduction of custom-made modifications into the genome to replicate key features of PD, leading to significant advances in our understanding of the pathophysiology of the disease. We review the most recent studies on this new generation of in vitro and in vivo PD models, which replicate the most relevant symptoms of the disease and enable better understanding of the aetiology and mechanisms of PD. This may be helpful in the future development of effective treatments to halt or slow disease progression. Copyright © 2017 Sociedad Española de Neurología. Publicado por Elsevier España, S.L.U. All rights reserved.

Environmental risk assessment of veterinary medicines used in Asian aquaculture

NARCIS (Netherlands)

Rico, A.

2014-01-01

One of the major constraints for the development and expansion of the Asian aquaculture industry has been the proliferation of disease outbreaks. To overcome this issue, a wide range of veterinary medicines including antibiotics, parasiticides and medical disinfectants have been

Vertical Integration in the Taiwan Aquaculture Industry

OpenAIRE

Tzong-Ru Lee (Jiun-Shen); Yi-Hsu; Cheng-Jen Lin; Kongkiti Phusavat; Nirote Sinnarong

2011-01-01

The study aims to improve the distribution channels in the Taiwan aquaculture industry through a better vertical integration. This study is derived from a need to improve the distribution performance of agricultural-based industries in response to increasing food demands in Asia and elsewhere. Based on a four-by-eight matrix derived from both a value chain and a service profit chain, thirty different strategies are developed. This development is based on key success factors and strategies for...

Boosting aquaculture production systems in Osun state: Role of ...

African Journals Online (AJOL)

This scenario leaves a high percentage of the population who depend on fish and fish products food insecure, and thus, the need to boost aquaculture production to argument the supply from the wild. The study therefore looks into the possibility of boosting the production systems through the use of micro-credit and ...

Peace Corps Aquaculture Training Manual. Training Manual T0057.

Science.gov (United States)

Peace Corps, Washington, DC. Information Collection and Exchange Div.

This Peace Corps training manual was developed from two existing manuals to provide a comprehensive training program in fish production for Peace Corps volunteers. The manual encompasses the essential elements of the University of Oklahoma program that has been training volunteers in aquaculture for 25 years. The 22 chapters of the manual are…

Food Security, Fisheries and Aquaculture in the Bolivian Amazon ...

International Development Research Centre (IDRC) Digital Library (Canada)

Indigenous communities involved in fisheries and aquaculture are among the most food insecure in the Bolivian Amazon. Although fish could be the main source of protein, it is often not part of the local diet. This project - supported by the Canadian International Food Security Research Fund (CIFSRF), a joint program of ...

The importance of aquaculture community group (ACG) in social media (Facebook) towards the aquaculture knowledge and financial improvement of small scale fish farmers (SSFF) in rural areas of Central Java

Science.gov (United States)

Elfitasari, T.; Nugroho, R. A.; Nugroho, A. P.

2018-04-01

Internet is now widely used by people all over the world, including small scale fisheries communities such as fish farmers. Many applications are being created including social media Facebook which are used by small scale fish farmers (SSFF) for its ease and convenience. The objective of this research is to identify the impact of aquaculture community group (ACG) in social media Facebook towards the improvement of aquaculture knowledge and financial condition of small scale fish farmers in Central Java. This research used quantitative approach where questionnaires were distributed into two groups: SSFF who are member of ACG in social media Facebook and who are not. Sampling technique used random sampling, used 60 samples of SSFF in Central Java. Data obtained were tested using the test statistic Independent t-test using SPSS v.20. Result showed a significant effect of group who are member of ACG in social media Facebook and those who are not, towards the aquaculture knowledge (t count -7.424 and sig 0.000) and financial improvement (t -3.775 and sig 0.000). The results of the average value of the SSFF who are ACG member in Facebook are also higher than farmers who are not.

Modelling for an improved integrated multi-trophic aquaculture system for the production of highly valued marine species

Directory of Open Access Journals (Sweden)

Luana Granada

2014-05-01

Full Text Available Integrated multi-trophic aquaculture (IMTA is regarded as a suitable approach to limit aquaculture nutrients and organic matter outputs through biomitigation. Here, species from different trophic or nutritional levels are connected through water transfer. The co-cultured species are used as biofilters, and each level has its own independent commercial value, providing both economic and environmental sustainability. In order to better understand and optimize aquaculture production systems, dynamic modelling has been developed towards the use of models for analysis and simulation of aquacultures. Several models available determine the carrying capacity of farms and the environmental effects of bivalve and fish aquaculture. Also, in the last two decades, modelling strategies have been designed in order to predict the dispersion and deposition of organic fish farm waste, usually using the mean settling velocity of faeces and feed pellets. Cultured organisms growth, effects of light and temperature on algae growth, retention of suspended solids, biodegradation of nitrogen and wastewater treatment are examples of other modelled parameters in aquaculture. Most modelling equations have been developed for monocultures, despite the increasing importance of multi-species systems, such as polyculture and IMTA systems. The main reason for the development of multi-species models is to maximize the production and optimize species combinations in order to reduce the environmental impacts of aquaculture. Some multi-species system models are available, including from the polyculture of different species of bivalves with fish to more complex systems with four trophic levels. These can incorporate ecosystem models and use dynamic energy budgets for each trophic group. In the proposed IMTA system, the bioremediation potential of the marine seaweed Gracilaria vermiculophylla (nutrient removal performance and the Mediterranean filter-feeding polychaete Sabella

Integrated multi-trophic aquaculture (combined production of fish, mussels and seaweed)

DEFF Research Database (Denmark)

Holdt, Susan Løvstad; Silva Marinho, Goncalo; Angelidaki, Irini

2014-01-01

The Danish marine aquaculture has, despite the huge potential, only been slowly increasing the last 25 years because of the imposed limits to the nitrogen (N) released to the environment. Mussels, seaweed and other organisms have been successfully tested as biofilters in integrated multi-trophic ......The Danish marine aquaculture has, despite the huge potential, only been slowly increasing the last 25 years because of the imposed limits to the nitrogen (N) released to the environment. Mussels, seaweed and other organisms have been successfully tested as biofilters in integrated multi......, mineral and vitamin content and profiles were monitored to evaluate the nutritional value and harvest time of the seaweed biomass. Sugarkelp showed to be efficient for bioremediation of nitrogen, with environmental and potentially economic benefits (e.g. waste water management and for production...

Comparative analysis of catfish BAC end sequences with the zebrafish genome

Directory of Open Access Journals (Sweden)

Abernathy Jason

2009-12-01

Full Text Available Abstract Background Comparative mapping is a powerful tool to transfer genomic information from sequenced genomes to closely related species for which whole genome sequence data are not yet available. However, such an approach is still very limited in catfish, the most important aquaculture species in the United States. This project was initiated to generate additional BAC end sequences and demonstrate their applications in comparative mapping in catfish. Results We reported the generation of 43,000 BAC end sequences and their applications for comparative genome analysis in catfish. Using these and the additional 20,000 existing BAC end sequences as a resource along with linkage mapping and existing physical map, conserved syntenic regions were identified between the catfish and zebrafish genomes. A total of 10,943 catfish BAC end sequences (17.3% had significant BLAST hits to the zebrafish genome (cutoff value ≤ e-5, of which 3,221 were unique gene hits, providing a platform for comparative mapping based on locations of these genes in catfish and zebrafish. Genetic linkage mapping of microsatellites associated with contigs allowed identification of large conserved genomic segments and construction of super scaffolds. Conclusion BAC end sequences and their associated polymorphic markers are great resources for comparative genome analysis in catfish. Highly conserved chromosomal regions were identified to exist between catfish and zebrafish. However, it appears that the level of conservation at local genomic regions are high while a high level of chromosomal shuffling and rearrangements exist between catfish and zebrafish genomes. Orthologous regions established through comparative analysis should facilitate both structural and functional genome analysis in catfish.

Enhancing Profitability of Pond Aquaculture in Ghana through Resource Management and Environmental Best Management Practices

OpenAIRE

Ansah, Yaw Boamah

2014-01-01

The accelerating pace of growth of aquaculture in sub-Saharan Africa has received much positive appraisal because of the potential of the industry to contribute to economic development and food security by providing jobs and animal protein. Adoption of best management practices (BMPs) holds the potential to ameliorate the related environmental impacts of aquaculture, such as in the amounts of nutrients and sediment that will enter natural water bodies from earthen pond effluents. The goals of...

Use of Geothermal Energy for Aquaculture Purposes - Phase III

Energy Technology Data Exchange (ETDEWEB)

Johnson, W C; Smith, K C

1981-09-01

This project, financed by the Pacific Northwest Regional Commission (PNRC), was designed to provide information to evaluate the best methods to use for intensive aquaculture of freshwater prawns, Macrobrachium rosenbergii, using geothermal energy. The freshwater prawn is a tropical organism and is native to southeast Asia. Earlier projects at Oregon Institute of Technology have shown the feasibility of culturing this aquatic animal in geothermal water. This phase of the project was designed to investigate intensive culture of this animal as well as the advantages of growing rainbow trout, ornamental tropical fin fish, and mosquito fish, Gambusia affnis, for vector control using geothermal energy. The research data collected on the prawns was obtained from the stocking and sampling of two 0.2- ha (half-acre) ponds constructed as a part of the project. The ponds are equipped with recording monitors for temperature and flow. The geothermal energy used is the geothermal effluent from the Oregon Institute of Technology heating system. This water is of potable quality and ranges in temperature from 50 to 70oC. The geothermal water used in the ponds is controlled at 27oC, ± 2oC, by using thermostats and solenoid valves. A small building next to the ponds contains facilities for hatching larvae prawns and tanks for growing post-larvae prawns. The hatchery facility makes the project self-sustaining. The hatchery was obtained as part of an earlier PNRC project.

Measuring Macrobenthos Biodiversity at Oyster Aquaculture Sites in the Delaware Inland Bays

Science.gov (United States)

Fuoco, M. J.; Ozbay, G.

2016-12-01

The Delaware Inland Bays consists of three shallow coastal bays located in the southern portion of Delaware. Anthropogenic activities have led to the degradation of water quality, because the bays are surrounded by highly developed areas and have low flushing rates. This results in loss of biodiversity and abundance of organisms. Ongoing degradation of the bays has led to a dramatic decline in local oyster populations since the late 1800s. Oysters are keystone species, which provide habitats for organisms and help to improve water quality. This study aims to find if the introduction of oyster aquaculture improves local biodiversity and abundance of macrobenthos. The study was conducted in Rehoboth Bay, Indian River Bay and Little Assawoman Bay. Aquaculture gear was placed at one location in each of the bays and 24 sediment core samples were taken once a month. From these core samples all worms were fixed and stained in a 10% Formalin Rose Bengal solution and preserved in 70% Ethanol for later identification. Stable carbon and nitrogen isotope analysis of oyster tissue will also be performed to assess the health of the bay. The goals of this research are to better understand the role of oyster aquaculture in restoring the viability and health of the Delaware Inland Bays.

Some aspects of design and analysis of selection programmes in aquaculture species.

Science.gov (United States)

Li, Y; Ponzoni, R W

2015-04-01

The aquaculture industry is one of the fastest growing animal food-producing sectors in the world, largely driven by an increasing demand for high-quality protein from developing countries. However, the majority of cultured production of aquatic species currently relies heavily on the collection of wild animals for use as broodstock. Aquatic animal domestication and genetic selection programmes in controlled environments are essential to enable the provision of a continued supply of high-quality food for an ever-expanding world population. Professor John James' significant contributions to the genetic improvement of conventional livestock species are well known. By contrast, his contributions to the aquaculture industry are less well known, especially in the areas of design and conduct of selective breeding programmes in aquatic animal species. In this study, we focus on a few aspects of aquaculture genetics to which Professor James made substantial contributions. His outstanding ability to comprehend, clarify and simplify complex problems with easy-to-understand mathematical derivations is clearly demonstrated in the areas of large-scale strain comparisons, genotype-by-environment interactions (GxE), transformations and interpretation of selection response, as well as in the treatment of economic aspects of designing breeding programmes. © 2015 Blackwell Verlag GmbH.

The Rising Tide of Antimicrobial Resistance in Aquaculture: Sources, Sinks and Solutions

Directory of Open Access Journals (Sweden)

Joy E. M. Watts

2017-06-01

Full Text Available As the human population increases there is an increasing reliance on aquaculture to supply a safe, reliable, and economic supply of food. Although food production is essential for a healthy population, an increasing threat to global human health is antimicrobial resistance. Extensive antibiotic resistant strains are now being detected; the spread of these strains could greatly reduce medical treatment options available and increase deaths from previously curable infections. Antibiotic resistance is widespread due in part to clinical overuse and misuse; however, the natural processes of horizontal gene transfer and mutation events that allow genetic exchange within microbial populations have been ongoing since ancient times. By their nature, aquaculture systems contain high numbers of diverse bacteria, which exist in combination with the current and past use of antibiotics, probiotics, prebiotics, and other treatment regimens—singularly or in combination. These systems have been designated as “genetic hotspots” for gene transfer. As our reliance on aquaculture grows, it is essential that we identify the sources and sinks of antimicrobial resistance, and monitor and analyse the transfer of antimicrobial resistance between the microbial community, the environment, and the farmed product, in order to better understand the implications to human and environmental health.

Potential of Constructed Wetlands for Removal of Antibiotics from Saline Aquaculture Effluents

Directory of Open Access Journals (Sweden)

Maria Bôto

2016-10-01

Full Text Available This work aimed to evaluate the potential of constructed wetlands (CWs for removal of antibiotics (enrofloxacin and oxytetracycline and antibiotic resistant bacteria from saline aquaculture wastewaters. Removal of other contaminants (nutrients, organic matter and metals and toxicity reduction and the influence of antibiotics with these processes were evaluated. Thus, nine CWs microcosms, divided into three treatments, were assembled and used to treat wastewater (doped or not with the selected antibiotics between October and December of 2015. Each week treated wastewater was removed and new wastewater (doped or not was introduced in CWs. Results showed >99% of each antibiotic was removed in CWs. After three weeks of adaptation, removal percentages >95% were also obtained for total bacteria and for antibiotic resistant bacteria. Nutrients, organic matter and metal removal percentages in CWs treated wastewater were identical in the absence and in the presence of each antibiotic. Toxicity in treated wastewaters was significantly lower than in initial wastewaters, independently of antibiotics presence. Results showed CWs have a high efficiency for removing enrofloxacin or oxytetracycline as well as antibiotic resistant bacteria from saline aquaculture wastewaters. CWs can also remove other contaminants independently of drug presence, making the aquaculture wastewater possible to be reutilized and/or recirculated.

The Rising Tide of Antimicrobial Resistance in Aquaculture: Sources, Sinks and Solutions

Science.gov (United States)

Watts, Joy E. M.; Schreier, Harold J.; Lanska, Lauma; Hale, Michelle S.

2017-01-01

As the human population increases there is an increasing reliance on aquaculture to supply a safe, reliable, and economic supply of food. Although food production is essential for a healthy population, an increasing threat to global human health is antimicrobial resistance. Extensive antibiotic resistant strains are now being detected; the spread of these strains could greatly reduce medical treatment options available and increase deaths from previously curable infections. Antibiotic resistance is widespread due in part to clinical overuse and misuse; however, the natural processes of horizontal gene transfer and mutation events that allow genetic exchange within microbial populations have been ongoing since ancient times. By their nature, aquaculture systems contain high numbers of diverse bacteria, which exist in combination with the current and past use of antibiotics, probiotics, prebiotics, and other treatment regimens—singularly or in combination. These systems have been designated as “genetic hotspots” for gene transfer. As our reliance on aquaculture grows, it is essential that we identify the sources and sinks of antimicrobial resistance, and monitor and analyse the transfer of antimicrobial resistance between the microbial community, the environment, and the farmed product, in order to better understand the implications to human and environmental health. PMID:28587172

Chlorination or monochloramination: Balancing the regulated trihalomethane formation and microbial inactivation in marine aquaculture waters

KAUST Repository

Sanawar, Huma

2017-08-15

Disinfection methods like chlorination are increasingly used to sanitize the water, equipment, tools and surfaces in aquaculture facilities. This is to improve water quality, and to maintain a hygienic environment for the well-being of aquatic organisms. However, chlorination can result in formation of regulated disinfection byproducts (DBPs) that can be carcinogenic and toxic. This study aims to evaluate if an optimal balance can be achieved between minimal regulated DBP formation and effective microbial inactivation with either chlorination or monochloramination for application in the Red Sea aquaculture waters. Upon chlorination, the concentration of total trihalomethanes (THMs), primarily bromoform, exceeded the regulatory limit of 80μg/L even at the lowest tested concentration of chlorine (1mg/L) and contact time (1h). Comparatively, regulated THMs concentration was only detectable at 30μg/L level in one of the three sets of monochloraminated marine aquaculture waters. The average log reduction of antibiotic-resistant bacteria (ARB) by chlorine ranged from 2.3-log to 3.2-log with different contact time. The average log reduction of ARB by monochloramine was comparatively lower at 1.9 to 2.9-log. Although viable Staphylococcus aureus was recovered from monochloraminated samples as opposed to chlorinated samples, the abundance of S. aureus was not high enough to result in any significant microbial risks. Both chlorination and monochloramination did not provide any significant improvement in the reduction of antibiotic resistance genes (ARGs). This study demonstrates that a systematic evaluation is needed to determine the optimal disinfectant required to balance both microbial and chemical risks. Compared to chlorine, monochloramine may be a more appropriate disinfection strategy for the treatment of aquaculture effluents prior to discharge or for recirculatory use in the aquaculture facility.

Human genetics and genomics a decade after the release of the draft sequence of the human genome

Science.gov (United States)

2011-01-01

Substantial progress has been made in human genetics and genomics research over the past ten years since the publication of the draft sequence of the human genome in 2001. Findings emanating directly from the Human Genome Project, together with those from follow-on studies, have had an enormous impact on our understanding of the architecture and function of the human genome. Major developments have been made in cataloguing genetic variation, the International HapMap Project, and with respect to advances in genotyping technologies. These developments are vital for the emergence of genome-wide association studies in the investigation of complex diseases and traits. In parallel, the advent of high-throughput sequencing technologies has ushered in the 'personal genome sequencing' era for both normal and cancer genomes, and made possible large-scale genome sequencing studies such as the 1000 Genomes Project and the International Cancer Genome Consortium. The high-throughput sequencing and sequence-capture technologies are also providing new opportunities to study Mendelian disorders through exome sequencing and whole-genome sequencing. This paper reviews these major developments in human genetics and genomics over the past decade. PMID:22155605

Exploring fish microbial communities to mitigate emerging diseases in aquaculture

NARCIS (Netherlands)

Bruijn, de Irene; Liu, Yiying; Wiegertjes, Geert F.; Raaijmakers, Jos M.

2018-01-01

Aquaculture is the fastest growing animal food sector worldwide and expected to further increase to feed the growing human population. However, existing and (re-)emerging diseases are hampering fish and shellfish cultivation and yield. For many diseases, vaccination protocols are not in place and

78 FR 5403 - Fisheries of the Caribbean, Gulf, and South Atlantic; Aquaculture

Science.gov (United States)

2013-01-25

...'s Web site at http://gulfcouncil.org/fishery_management_plans/aquaculture_management.php . FOR.... The FMP was initiated to provide a comprehensive framework for authorizing and regulating offshore...

Genomic Testing

Science.gov (United States)

... this database. Top of Page Evaluation of Genomic Applications in Practice and Prevention (EGAPP™) In 2004, the Centers for Disease Control and Prevention launched the EGAPP initiative to establish and test a ... and other applications of genomic technology that are in transition from ...

Validation of a model for ranking aquaculture facilities for risk-based disease surveillance.

Science.gov (United States)

Diserens, Nicolas; Falzon, Laura Cristina; von Siebenthal, Beat; Schüpbach-Regula, Gertraud; Wahli, Thomas

2017-09-15

A semi-quantitative model for risk ranking of aquaculture facilities in Switzerland with regard to the introduction and spread of Viral Haemorrhagic Septicaemia (VHS) and Infectious Haematopoietic Necrosis (IHN) was developed in a previous study (Diserens et al., 2013). The objective of the present study was to validate this model using data collected during field visits on aquaculture sites in four Swiss cantons compared to data collected through a questionnaire in the previous study. A discrepancy between the values obtained with the two different methods was found in 32.8% of the parameters, resulting in a significant difference (pranking of Swiss aquaculture facilities according to their risk of getting infected with or spreading of VHS and IHN, as the five facilities that tested positive for these diseases in the last ten years were ranked as medium or high risk. Moreover, because the seven fish farms that were infected with Infectious Pancreatic Necrosis (IPN) during the same period also belonged to the risk categories medium and high, the classification appeared to correlate with the occurrence of this third viral fish disease. Copyright © 2017 Elsevier B.V. All rights reserved.

Economic valuation of a mangrove ecosystem threatened by shrimp aquaculture in Sri Lanka.

Science.gov (United States)

Gunawardena, M; Rowan, J S

2005-10-01

Mangrove ecosystems in Sri Lanka are increasingly under threat from development projects, especially aquaculture. An economic assessment is presented for a relatively large (42 ha) shrimp culture development proposed for the Rekawa Lagoon system in the south of Sri Lanka, which involved an extended cost-benefit analysis of the proposal and an estimate of the "total economic value" (TEV) of a mangrove ecosystem. The analysis revealed that the internal benefits of developing the shrimp farm are higher than the internal costs in the ratio of 1.5:1. However, when the wider environmental impacts are more comprehensively evaluated, the external benefits are much lower than the external costs in a ratio that ranges between 1:6 and 1:11. In areas like Rekawa, where agriculture and fisheries are widely practiced at subsistence levels, shrimp aquaculture developments have disproportionately large impacts on traditional livelihoods and social welfare. Thus, although the analysis retains considerable uncertainties, more explicit costing of the environmental services provided by mangrove ecosystems demonstrates that low intensity, but sustainable, harvesting has far greater long-term value to local stakeholders and the wider community than large shrimp aquaculture developments.

Utilisation des "algues-fourrage" en aquaculture

OpenAIRE

Chretiennot-dinet, Marie-josèphe; Robert, Rene; His, Edouard

1986-01-01

Les travaux concernant l'utilisation d'algues unicellulaires pour la nutrtion de larves et de juvéniles de bivalves d'intérêt commercial sont analysés. Sur une cinquantaine d'espèces d'algues testées, un dizaine seulement sont produites en grande quantité dans des écloseries commerciales sous le non "d'algues fourrage". Les principales espèces employées sont décrites et leurs caractéristiques majeures illustrées. Les critères permettant de retenir une espèce pour son utilisation en aquacultur...

A survey for the presence of microcystins in aquaculture ponds in ...

African Journals Online (AJOL)

PRECIOUS

2009-11-16

Nov 16, 2009 ... form of blue green algae in an aquaculture pond, they. *Corresponding author. ... passing through the food chain. Fish and other ... Some of these aqua- culture ponds supply their products (harvested fish) directly to spe-.

The perception of aquaculture on the Swedish West Coast

DEFF Research Database (Denmark)

Thomas, Jean-Baptiste E.; Nordström, Leif Jonas; Risén, Emma

2017-01-01

neutral responses. On the whole, respondents were favourable to the depicted scenario. Finally, it was found that the high-awareness group tended to be more supportive than the low or medium-awareness groups, hinting at the benefits of increasing awareness to reduce public aversion and to support...... a sustainable development of aquaculture on the Swedish West Coast....

Support to the CGIAR Program on Aquaculture | CRDI - Centre de ...

International Development Research Centre (IDRC) Digital Library (Canada)

More than 700 million people depend on aquatic agricultural systems (AAS) for their livelihood. These are diverse farming systems that include a mix of cultivation, livestock-raising, aquaculture, fishing, and gathering natural resources such as fruits, seeds, timber and wildlife. However, there are many constraints that ...

Introducing a new disinfectant for U.S. aquaculture - peracetic acid

Science.gov (United States)

Peracetic acid (PAA) is a promising disinfectant for biosecurity in the US aquaculture industry to prevent disease outbreaks from fish pathogens. PAA is a stabilized mixture of acetic acid, hydrogen peroxide and water that breaks down quickly to water and vinegar. It is being increasingly used to ...

Aquaculture: A Course of Study for Sand Point Secondary School.

Science.gov (United States)

Alaska State Dept. of Education, Juneau. Office of Public Information and Publications.

This program is designed to involve students in the economy of their community. It combines an interdisciplinary educational program with practical field and laboratory experience. This program provides opportunities in the area of aquaculture, controlled cultivation of marketable species and the total ecological corrections necessary to maintain…

Stensund wastewater aquaculture. Studies of key factors for its optimization

Energy Technology Data Exchange (ETDEWEB)

Guterstam, B.; Forsberg, L.E. [Stensund Ecological Center, Stensunds Fold Center, S-61991 Trosa (Sweden); Buczynska, A. [Faculty of Process and Environmental Engineering, Technical University of Lodz, 175 Wolczanska strasse, PL-90942 Lodz (Poland); Frelek, K. [Department of Analytical Chemistry, Medical University of Gdansk, Al. Gen. J. Hallera 107, PL-80416 Gdansk (Poland); Pilkaityte, R. [Natural Science Faculty, University of Klaipeda, LT-5813 Klaipeda (Lithuania); Reczek, L. [Department of Water Supply and Sewage Systems, Warsaw Agricultural University, 166 Nowoursynowska strasse, PL-02787 Warsaw (Poland); Rucevska, I. [Latvian Environmental Data Center, Straumes 2, Jurmala LV 2015 (Latvia)

1998-10-21

This paper is a summary of an in-depth study of key factors in the function of a 7-year-old aquaculture system designed for treatment and recycling of domestic wastewater at Stensund, Trosa, Sweden. The reported areas are: wastewater flows, reduction of biochemical oxygen demand (BOD), chemical oxygen demand (COD), phosphorus, nitrogen, and fecal bacteria. Plant production is recorded as harvested biomass, and energy results are given as generated heat and electricity consumption. Special studies were conducted on the reduction of copper by anaerobic treatment. Nitrification was studied with different filter media. Microalgal autofocculation of phosphorus was studied in relation to pH and water hardness for the green algal genus Scenedesmus. Limiting factors for the growth of Daphnia magna in the zooplankton step of the constructed aquatic food-web was studied in a specially designed reproduction test. The results are analyzed in order to optimize the function of the wastewater aquaculture

Exploring fish microbial communities to mitigate emerging diseases in aquaculture.

Science.gov (United States)

de Bruijn, Irene; Liu, Yiying; Wiegertjes, Geert F; Raaijmakers, Jos M

2018-01-01

Aquaculture is the fastest growing animal food sector worldwide and expected to further increase to feed the growing human population. However, existing and (re-)emerging diseases are hampering fish and shellfish cultivation and yield. For many diseases, vaccination protocols are not in place and the excessive use of antibiotics and other chemicals is of substantial concern. A more sustainable disease control strategy to protect fish and shellfish from (re-)emerging diseases could be achieved by introduction or augmentation of beneficial microbes. To establish and maintain a 'healthy' fish microbiome, a fundamental understanding of the diversity and temporal-spatial dynamics of fish-associated microbial communities and their impact on growth and health of their aquatic hosts is required. This review describes insights in the diversity and functions of the fish bacterial communities elucidated with next-generation sequencing and discusses the potential of the microbes to mitigate (re-)emerging diseases in aquaculture. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Permanent Advisory Network for Diseases in Aquaculture (PANDA)

OpenAIRE

Arzul, Isabelle; Ariel, E.; Hill, B.

2005-01-01

The PANDA project aims to establish a permanent network of aquatic animal health specialists (researchers and diagnosticians) to provide a forum for the debate of issues concerning diseases in European aquaculture, and to communicate the results of these discussions to the European Commission with provision of advice on EU policy and legislation for aquatic animal health. PANDA consists of five scientific work packages: risk analysis, epidemiology, diagnosis, environmentally safe strategies f...

Effects of temperature on nitrous oxide (N2O) emission from intensive aquaculture system.

Science.gov (United States)

Paudel, Shukra Raj; Choi, Ohkyung; Khanal, Samir Kumar; Chandran, Kartik; Kim, Sungpyo; Lee, Jae Woo

2015-06-15

This study examines the effects of temperature on nitrous oxide (N2O) emissions in a bench-scale intensive aquaculture system rearing Koi fish. The water temperature varied from 15 to 24 °C at interval of 3 °C. Both volumetric and specific rate for nitrification and denitrification declined as the temperature decreased. The concentrations of ammonia and nitrite, however, were lower than the inhibitory level for Koi fish regardless of temperature. The effects of temperature on N2O emissions were significant, with the emission rate and emission factor increasing from 1.11 to 1.82 mg N2O-N/d and 0.49 to 0.94 mg N2O-N/kg fish as the temperature decreased from 24 to 15 °C. A global map of N2O emission from aquaculture was established by using the N2O emission factor depending on temperature. This study demonstrates that N2O emission from aquaculture is strongly dependent on regional water temperatures as well as on fish production. Copyright © 2015 Elsevier B.V. All rights reserved.

The Kuril Islands as a potential region for aquaculture: Trace elements in chum salmon

International Nuclear Information System (INIS)

Khristoforova, Nadezhda K.; Tsygankov, Vasiliy Yu.; Lukyanova, Olga N.; Boyarova, Margarita D.

2016-01-01

The Kuril Islands region is considered promising for development of salmon aquaculture. There are 41 salmon fish hatcheries in the Sakhalin Island and the Kuril Islands, 34 of them are hatcheries of the chum. Therefore, concentrations of six elements (Zn, Cu, Cd, Pb, As, and Hg) were determined in chum salmon were caught in this region. The contents of toxic elements (Cd, Pb, As, and Hg) don't exceed their maximum permissible concentrations (MPC) according to the Russian sanitary standards, but concentration of Pb are closely to MPC. Increased concentrations of Pb in wild chum have the natural origin. The unusual conditions of the Western Pacific are formed under the influence such factors as volcanism and upwelling. - Highlights: • High content of Pb, found in chum from the Kuril Islands, is caused by natural sources. • The content of elements do not exceed maximum permissible concentrations in Russia. • Kuril region is considered as promising zone for development of salmon aquaculture. - Kuril region is suitable for aquaculture development of Pacific salmon.

Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia.

Science.gov (United States)

Holm, Kåre Olav; Nilsson, Kristina; Hjerde, Erik; Willassen, Nils-Peder; Milton, Debra L

2015-01-01

Vibrio anguillarum causes a fatal hemorrhagic septicemia in marine fish that leads to great economical losses in aquaculture world-wide. Vibrio anguillarum strain NB10 serotype O1 is a Gram-negative, motile, curved rod-shaped bacterium, isolated from a diseased fish on the Swedish coast of the Gulf of Bothnia, and is slightly halophilic. Strain NB10 is a virulent isolate that readily colonizes fish skin and intestinal tissues. Here, the features of this bacterium are described and the annotation and analysis of its complete genome sequence is presented. The genome is 4,373,835 bp in size, consists of two circular chromosomes and one plasmid, and contains 3,783 protein-coding genes and 129 RNA genes.

Genomics: The Science and Technology Behind the Human Genome Project (by Charles R. Cantor and Cassandra L. Smith)

Science.gov (United States)

Serra, Reviewed By Martin J.

2000-01-01

analysis of error in sequencing and current bottlenecks in the sequencing effort. The next chapter describes the steps necessary to scale current technologies for the sequencing of entire genomes. Chapter 12 examines alternate methods for DNA sequencing. Initially, methods of single-molecule sequencing and sequencing by microscopy are introduced; the majority of the chapter is devoted to the development of DNA sequencing methods using chip microarrays and hybridization. The remaining chapters (13-15) consider the uses and analysis of DNA sequence information. The initial focus is on the identification of genes. Several examples are given of the use of DNA sequence information for diagnosis of inherited or infectious diseases. The sequence-specific manipulation of DNA is discussed in Chapter 14. The final chapter deals with the implications of large-scale sequencing, including methods for identifying genes and finding errors in DNA sequences, to the development of computer algorithms for the interpretation of DNA sequence information. The text figures are black and white line drawings that, although clearly done, seem a bit primitive for 1999. While I appreciated the simplicity of the drawings, many students accustomed to more colorful presentations will find them wanting. The four color figures in the center of the text seem an afterthought and add little to the text's clarity. Each chapter has a set of additional reading sources, mostly primary sources. Often, specialized topics are offset into boxes that provide clarification and amplification without cluttering the text. An appendix includes a list of the Web-based database resources. As an undergraduate instructor who has previously taught biochemistry, molecular biology, and a course on the human genome, I found many interesting tidbits and amplifications throughout the text. I would recommend this book as a text for an advanced undergraduate or beginning graduate course in genomics. Although the text works though

The accumulation of substances in Recirculating Aquaculture Systems (RAS) affects embryonic and larval development in common carp Cyprinus carpio

NARCIS (Netherlands)

Martins, C.I.; Pristin, M.G.; Ende, S.S.W.; Eding, E.H.; Verreth, J.A.J.

2009-01-01

The accumulation of substances in Recirculating Aquaculture Systems (RAS) may impair the growth and welfare of fish. To test the severity of contaminants accumulated in RAS, early-life stages of fish were used. Ultrafiltered water from two Recirculating Aquaculture Systems (RAS), one RAS with a high

MANAGEMENT OF SUSTAINABLE SEAWEED (Kappaphycus alvarezii AQUACULTURE IN THE CONTEXT OF CLIMATE CHANGE MITIGATION

Directory of Open Access Journals (Sweden)

Erlania Erlania

2014-06-01

Full Text Available Seaweed is an important aquaculture commodity that could contribute on climate change mitigation, related to its ability on absorbing CO2, as one of the green house gases, through photosynthesis. This study aimed to analyze seaweed potencies on carbon sequestration in the context of climate change mitigation while still resulting optimum production as primary purpose and to analyze the carrying capacity of Gerupuk Bay in order to manage sustainability of seaweed aquaculture. Seaweed, (Kappaphycus alvarezii was cultivated with long-line system in Gerupuk Bay, West Nusa Tenggara, during five months for three cultivation cycles. Samplings were conducted at days-15, 30, and 45 with CO2 absorption rates as main parameters. Water carrying capacity was calculated to determine the ability of Gerupuk Bay waters for supporting development of sustainable seaweed aquaculture. The results showed that absorption rates of CO2 by seaweed (K. alvarezii were different at each sampling days of cultivation periods; the highest value was at 10-20 days of cultivation. CO2 absorption analysis resulted based on sampling days of cultivation period could be appl ied to formulate the strategies for management of sustainable seaweed aquaculture, with optimal production and positively contributed to the environment. However, waters carrying capacity should also be considered as major aspect in the application of seaweed cultivation management, thus it can run continuously without causing conflicts with other interests.

Evaluation of waste concrete road materials for use in oyster aquaculture.

Science.gov (United States)

2013-02-01

The primary objective of this study was to determine the suitability of recycled concrete : aggregate (RCA) from road projects as bottom conditioning material for on-bottom oyster : aquaculture in the Chesapeake Bay. The testing was designed to (1) e...

Sustainable brackishwater industrial aquaculture and management of environment- use of ozone

Digital Repository Service at National Institute of Oceanography (India)

Dwivedi, S.N.

Surveys conducted in aquaculture farm showed that oxygen level varies between 3 to 5 ml. oxygen per litre. This is not adequate for high production and also cause pollution. However if aeration is replaced with positively charged ozone, oxygen...

Genetical Genomics for Evolutionary Studies

NARCIS (Netherlands)

Prins, J.C.P.; Smant, G.; Jansen, R.C.

2012-01-01

Genetical genomics combines acquired high-throughput genomic data with genetic analysis. In this chapter, we discuss the application of genetical genomics for evolutionary studies, where new high-throughput molecular technologies are combined with mapping quantitative trait loci (QTL) on the genome

Derivation of economic values for production traits in aquaculture species

NARCIS (Netherlands)

Janssen, K.P.E.; Berentsen, P.B.M.; Besson, M.B.; Komen, J.

2017-01-01

Background:
In breeding programs for aquaculture species, breeding goal traits are often weighted based on the desired gains but economic gain would be higher if economic values were used instead. The objectives of this study were: (1) to develop a bio-economic model to derive economic values

Offshore finfish aquaculture in the United States: An examination of federal laws that could be used to address environmental and occupational public health risks.

Science.gov (United States)

Fry, Jillian P; Love, David C; Shukla, Arunima; Lee, Ryan M

2014-11-19

Half of the world's edible seafood comes from aquaculture, and the United States (US) government is working to develop an offshore finfish aquaculture industry in federal waters. To date, US aquaculture has largely been regulated at the state level, and creating an offshore aquaculture industry will require the development of a new regulatory structure. Some aquaculture practices involve hazardous working conditions and the use of veterinary drugs, agrochemicals, and questionable farming methods, which could raise environmental and occupational public health concerns if these methods are employed in the offshore finfish industry in the US. This policy analysis aims to inform public health professionals and other stakeholders in the policy debate regarding how offshore finfish aquaculture should be regulated in the US to protect human health; previous policy analyses on this topic have focused on environmental impacts. We identified 20 federal laws related to offshore finfish aquaculture, including 11 that are relevant to preventing, controlling, or monitoring potential public health risks. Given the novelty of the industry in the US, myriad relevant laws, and jurisdictional issues in an offshore setting, federal agencies need to work collaboratively and transparently to ensure that a comprehensive and functional regulatory structure is established that addresses the potential public health risks associated with this type of food production.

Control methodologies based on geothermal recirculating aquaculture system

International Nuclear Information System (INIS)

Farghally, Hanaa M.; Atia, Doaa M.; El-madany, Hanaa T.; Fahmy, Faten H.

2014-01-01

One of the most common uses of geothermal heat is in RAS (recirculation aquaculture systems) where the water temperature is accurately controlled for optimum growing conditions for sustainable and intensive rearing of marine and freshwater fish. This paper presents a design for RAS rearing tank and plate type heat exchanger to be used with geothermal energy as a source of heating water. A well at Umm Huweitat on the Red Sea is used as a source of geothermal energy. The heat losses from the RAS tank are calculated using Geo Heat Center Software. Then a plate type heat exchanger is designed using the epsilon–NTU (number of transfer units) analysis method. For optimal growth and abundance of production, a different techniques of control system are applied to control the water temperature. The total system is built in MATLAB/SIMULINK to study the overall performance of control unit. Finally, a comparison between PI, Fuzzy-PID, and Fuzzy Logic Control has been done. - Highlights: • Design recirculating aquaculture system using geothermal energy. • Design a PI controller for water temperature control. • Design a Fuzzy logic controller for water temperature control. • Design a Fuzzy-PID controller for water temperature control. • Comparison between different control systems