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Sample records for antarctic nematode molecular

  1. Molecular evolution in Panagrolaimus nematodes: origins of parthenogenesis, hermaphroditism and the Antarctic species P. davidi

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    LaMunyon Craig W

    2009-01-01

    Full Text Available Abstract Background As exemplified by the famously successful model organism Caenorhabditis elegans, nematodes offer outstanding animal systems for investigating diverse biological phenomena due to their small genome sizes, short generation times and ease of laboratory maintenance. Nematodes in the genus Panagrolaimus have served in comparative development and anhydrobiosis studies, and the Antarctic species P. davidi offers a powerful paradigm for understanding the biological mechanisms of extreme cold tolerance. Panagrolaimus nematodes are also unique in that examples of gonochoristic, hermaphroditic and parthenogenetic reproductive modes have been reported for members of this genus. The evolutionary origins of these varying reproductive modes and the Antarctic species P. davidi, however, remain enigmatic. Results We collected nuclear ribosomal RNA gene and mitochondrial protein-coding gene sequences from diverse Panagrolaimus species and strains, including newly discovered isolates from Oregon, to investigate phylogenetic relationships in this nematode genus. Nuclear phylogenies showed that the species and strains historically identified as members of Panagrolaimus constitute a paraphyletic group, suggesting that taxonomic revision is required for Panagrolaimus and related nematode lineages. Strain-specific reproductive modes were mapped onto the molecular phylogeny to show a single origin of parthenogenesis from a presumably gonochoristic ancestor. The hermaphroditic strains were all placed outside a major monophyletic clade that contained the majority of other Panagrolaimus nematodes. Phylogenetic analyses of mitochondrial sequences showed that substantial molecular and geographic diversity exists within the clade of parthenogenetic strains. The Antarctic species P. davidi was found to be very closely related to two Panagrolaimus strains from southern California. Phylogenetic and molecular clock analyses suggested that P. davidi and the

  2. Cold tolerance of the Antarctic nematodes Plectus murrayi and Scottnema lindsayae.

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    Wharton, David A; Raymond, Mélianie R

    2015-04-01

    The cold tolerance of the Antarctic nematodes Scottnema lindsayae and Plectus murrayi was determined using material freshly isolated from the field. Both species could survive low temperatures but the survival of S. lindsayae was greater than that of P. murrayi. Field soil temperatures in late spring-early summer indicated a minimum temperature of -19.5 °C and a maximum cooling rate of 0.71 °C min(-1). In P. murrayi grown in culture, there was no significant effect of acclimation, nor of the two culture media used, on survival after freezing but survival was greater if freezing was seeded at -1 °C than at lower temperatures. The freezing survival ability of P. murrayi is much less than that of Panagrolaimus davidi CB1, another Antarctic nematode. Cryomicroscopy indicates that P. murrayi can survive low temperatures by either cryoprotective dehydration or freezing tolerance, but that freezing tolerance is the dominant strategy. Measurable thermal hysteresis was detected only in highly concentrated extracts of the nematodes, indicating the presence of an antifreeze protein, but at the concentrations likely to be found in vivo, the major function of the ice active protein involved is probably recrystallization inhibition.

  3. Molecular mechanisms of nematode-nematophagous microbe interactions: basis for biological control of plant-parasitic nematodes.

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    Li, Juan; Zou, Chenggang; Xu, Jianping; Ji, Xinglai; Niu, Xuemei; Yang, Jinkui; Huang, Xiaowei; Zhang, Ke-Qin

    2015-01-01

    Plant-parasitic nematodes cause significant damage to a broad range of vegetables and agricultural crops throughout the world. As the natural enemies of nematodes, nematophagous microorganisms offer a promising approach to control the nematode pests. Some of these microorganisms produce traps to capture and kill the worms from the outside. Others act as internal parasites to produce toxins and virulence factors to kill the nematodes from within. Understanding the molecular basis of microbe-nematode interactions provides crucial insights for developing effective biological control agents against plant-parasitic nematodes. Here, we review recent advances in our understanding of the interactions between nematodes and nematophagous microorganisms, with a focus on the molecular mechanisms by which nematophagous microorganisms infect nematodes and on the nematode defense against pathogenic attacks. We conclude by discussing several key areas for future research and development, including potential approaches to apply our recent understandings to develop effective biocontrol strategies.

  4. MOLECULAR CHARACTERIZATION OF ANISAKID NEMATODES IN FISHES OF NORTHERN SARDINIAN SEA

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    T. Tedde

    2012-08-01

    Full Text Available The authors report results of analysis carried out during 2008-2010 for identification and molecular characterization of larval Anisakis nematodes isolated from fishes of the northern Sardinian sea.

  5. Molecular and biochemical characterization of nematode cofactor independent phosphoglycerate mutases.

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    Raverdy, Sylvine; Zhang, Yinhua; Foster, Jeremy; Carlow, Clotilde K S

    2007-12-01

    Phosphoglycerate mutase (PGM, EC 5.4.2.1) catalyzes the isomerization of 3-phosphoglycerate and 2-phosphoglycerate in glycolysis and gluconeogenesis. Two distinct types of PGM exist in nature, one that requires 2,3-bisphosphoglycerate as a cofactor (dPGM) and another that does not (iPGM). The two enzymes are structurally distinct and possess different mechanisms of action. In any particular organism, one form may exist or both. Nematodes possess the iPGM form whereas mammals have dPGM. In the present study, we have cloned and expressed iPGM from Onchocerca volvulus and described the catalytic properties of O. volvulus, Brugia malayi and Caenorhabditis elegans iPGM enzymes. Temperature and pH optima were determined for each enzyme. Like other iPGM enzymes, the activities of the nematode iPGM enzymes were dependent on the presence of divalent ions. Inactivation by EDTA could be restored most effectively by magnesium and manganese ions. Kinetic parameters and specific activities of the various recombinant enzymes were determined. The high similarity in catalytic properties among the enzymes indicates that a single enzyme inhibitor would likely be effective against all nematode enzymes. Inhibition of iPGM activity in vivo may lead to lethality as indicated by RNAi studies in C. elegans. Our results support the development of iPGM as a promising drug target in parasitic nematodes.

  6. Top 10 plant-parasitic nematodes in molecular plant pathology

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    Jones, J.T.; Haegeman, A.; Danchin, E.G.J.; Gaur, H.S.; Helder, J.; Jones, M.G.K.; Kikuchi, T.; Manzanilla-López, R.; Palomares-Rius, J.E.; Wesemael, W.M.L.; Perry, R.N.

    2013-01-01

    The aim of this review was to undertake a survey of researchers working with plant-parasitic nematodes in order to determine a ‘top 10’ list of these pathogens based on scientific and economic importance. Any such list will not be definitive as economic importance will vary depending on the region o

  7. RNA-Seq reveals the molecular mechanism of trapping and killing of root-knot nematodes by nematode-trapping fungi.

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    Pandit, Ramesh; Patel, Reena; Patel, Namrata; Bhatt, Vaibhav; Joshi, Chaitanya; Singh, Pawan Kumar; Kunjadia, Anju

    2017-04-01

    Nematode-trapping fungi are well known for their inherent potential to trap and kill nematodes using specialized trapping devices. However, the molecular mechanisms underlying the trapping and subsequent processes are still unclear. Therefore, in this study, we examined differential genes expression in two nematode-trapping fungi after baiting with nematode extracts. In Arthrobotrys conoides, 809 transcripts associated with diverse functions such as signal transduction, morphogenesis, stress response and peroxisomal proteins, proteases, chitinases and genes involved in the host-pathogen interaction showed differential expression with fold change (>±1.5 fold) in the presence of nematode extract with FDR (p-value < 0.001). G-proteins and mitogen activated protein kinases are considered crucial for signal transduction mechanism. Results of qRT-PCR of 20 genes further validated the sequencing data. Further, variations in gene expression among Duddingtonia flagrans and A. conoides showed septicity of nematode-trapping fungi for its host. The findings illustrate the molecular mechanism of fungal parasitism in A. conoides which may be helpful in developing a potential biocontrol agent against parasitic nematodes.

  8. Molecular evolution of hemoglobins of Antarctic fishes (Notothenioidei)

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    Stam, W.T.; Beintema, J.J; D Avino, R.; Tamburrini, M.; di Prisco, G.

    1997-01-01

    Amino acid sequences of alpha- and beta-chains of human hemoglobin and of hemoglobins of coelacanth and 24 teleost fish species, including 11 antarctic and two temperate Notothenioidei, were analyzed using maximum parsimony. Trees were derived for the alpha- and beta-chains separately and for tandem

  9. Recrystallization in a Freezing Tolerant Antarctic Nematode, Panagrolaimus davidi, and a Alpine Weta, Hemideina maori (Orthoptera; Stenopelmatidae)

    DEFF Research Database (Denmark)

    Ramløv, Hans; Wharton, David A.; Wilson, Peter W.

    1996-01-01

    The ability of haemolymph from the freezing tolerant weta,Hemideina maori,and supernatant from homogenates of the freezing tolerant nematodePanagrolaimus davidito inhibit the recrystallization of ice was examined using the “splat freezing” technique and annealing on a cryomicroscope stage. There ...

  10. Molecular phylogenetic perspectives for character classification and convergence: Framing some issues with nematode vulval appendages and telotylenchid tail termini

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    Characters flagged as convergent based on newer molecular phylogenetic trees inform both practical identification and more esoteric classification. Nematode morphological characters such as lateral lines, bullae and laciniae are quite independent structures from those similarly named in other organi...

  11. Molecular clock evidence for survival of Antarctic cyanobacteria (Oscillatoriales, Phormidium autumnale) from Paleozoic times.

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    Strunecký, Otakar; Elster, Josef; Komárek, Jiří

    2012-11-01

    Cyanobacteria are well adapted to freezing and desiccation; they have been proposed as possible survivors of comprehensive Antarctic glaciations. Filamentous types from the order Oscillatoriales, especially the species Phormidium autumnale Kützing ex Gomont 1892, have widely diverse morphotypes that dominate in Antarctic aquatic microbial mats, seepages, and wet soils. Currently little is known about the dispersion of cyanobacteria in Antarctica and of their population history. We tested the hypothesis that cyanobacteria survived Antarctic glaciations directly on site after the Gondwana breakup by using the relaxed and strict molecular clock in the analysis of the 16S rRNA gene. We estimated that the biogeographic history of Antarctic cyanobacteria belonging to P. autumnale lineages has ancient origins. The oldest go further back in time than the breakup of Gondwana and originated somewhere on the supercontinent between 442 and 297 Ma. Enhanced speciation rate was found around the time of the opening of the Drake Passage (c. 31-45 Ma) with beginning of glaciations (c. 43 Ma). Our results, based primarily on the strains collected in maritime Antarctica, mostly around James Ross Island, support the hypothesis that long-term survival took place in glacial refuges. The high morphological diversification of P. autumnale suggested the coevolution of lineages and formation of complex associations with different morphologies, resulting in a specific endemic Antarctic cyanobacterial flora.

  12. Advances in molecular identification of plant nematodes%植物线虫分子鉴定研究进展

    Institute of Scientific and Technical Information of China (English)

    卓侃; 廖金铃

    2015-01-01

    Plant nematodes can damage crops and trees.The accurate identification of plant nematodes is the basis for the control of plant nematode diseases.It is very challenging to identify plant nematode species only based on morphology,because plant nematodes are microscopic in size,and some morphological characters may have inter-specific overlapping or intraspecific variability.Molecular techniques provide a fast,accurate and reliable method for the detection and identification of plant nematodes.For promoting the deep study on molecular identification of plant nematodes,this paper summarized research progresses in and current research status on DNA extraction of plant nematodes,target sequences for identifying plant nematodes and the main molecular identification meth-ods for plant nematodes.%植物线虫可危害农作物和林木,对它们的准确鉴定是防治植物线虫病害的基础。由于植物线虫很小,而且在形态上种间常有覆盖,而种内有较大的变异,仅依据形态特征很难鉴定。分子鉴定技术给植物线虫的检测和鉴定提供了快速、精确、可靠的方法。文章综述了植物线虫分子的 DNA 提取、分子鉴定靶标序列的选择及分子鉴定方法等方面的研究进展及现状,以促进对植物线虫分子鉴定更深入的研究。

  13. Principal Component Analysis and Molecular Characterization of Reniform Nematode Populations in Alabama

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    Seloame T. Nyaku

    2016-04-01

    Full Text Available U.S. cotton production is suffering from the yield loss caused by the reniform nematode (RN, Rotylenchulus reniformis. Management of this devastating pest is of utmost importance because, no upland cotton cultivar exhibits adequate resistance to RN. Nine populations of RN from distinct regions in Alabama and one population from Mississippi were studied and thirteen morphometric features were measured on 20 male and 20 female nematodes from each population. Highly correlated variables (positive in female and male RN morphometric parameters were observed for body length (L and distance of vulva from the lip region (V (r = 0.7 and tail length (TL and c′ (r = 0.8, respectively. The first and second principal components for the female and male populations showed distinct clustering into three groups. These results show pattern of sub-groups within the RN populations in Alabama. A one-way ANOVA on female and male RN populations showed significant differences (p ≤ 0.05 among the variables. Multiple sequence alignment (MSA of 18S rRNA sequences (421 showed lengths of 653 bp. Sites within the aligned sequences were conserved (53%, parsimony-informative (17%, singletons (28%, and indels (2%, respectively. Neighbor-Joining analysis showed intra and inter-nematodal variations within the populations as clone sequences from different nematodes irrespective of the sex of nematode isolate clustered together. Morphologically, the three groups (I, II and III could not be distinctly associated with the molecular data from the 18S rRNA sequences. The three groups may be identified as being non-geographically contiguous.

  14. Deciphering the Molecular Variations of Pine Wood Nematode Bursaphelenchus xylophilus with Different Virulence.

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    Xiaolei Ding

    Full Text Available Bursaphelenchus xylophilus is the causative agent of pine wilt disease which has caused huge economic losses in many countries. It has been reported that two forms of pine wood nematodes existed in its native region, i.e., with strong virulence and weak virulence. However, little is known about the molecular differences between the two forms. To better understand their molecular variations, transcriptome and genome sequences of three strongly virulent and one weakly virulent strains were analyzed. We found 238 transcripts and 84 exons which showed notable changes between the two virulent forms. Functional analyses of both differentially expressed transcripts and exons indicated that different virulence strains showed dissimilar nematode growth, reproduction, and oxidoreductase activities. In addition, we also detected a small number of exon-skipping events in B. xylophilus. Meanwhile, 117 SNPs were identified as potential genetic markers in distinguishing the two forms. Four of them were further proved to have undergone allele specific expressions and possibly interrupted the target site of evolutionary conserved B. xylophilus miR-47. These particular SNPs were experimentally verified by including eight additional strains to ensure the validity of our sequencing results. These results could help researchers to better diagnose nematode species with different virulence and facilitate the control of pine wilt disease.

  15. Molecular identification of nematode larvae different from those of the Trichinella genus detected by muscle digestion.

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    Marucci, Gianluca; Interisano, Maria; La Rosa, Giuseppe; Pozio, Edoardo

    2013-05-20

    Although larvae of the genus Trichinella are the most common parasite species detected in vertebrate muscles using artificial digestion, nematode larvae belonging to other genera are sometimes detected and incorrectly identified as Trichinella. However, it is often very difficult to identify these larvae at the species, genus or family level using microscopy because of the absence of specific morphological characters or cuticle damage, and the only means of identification is PCR and sequencing of specific molecular markers (12S mtDNA; COI; 18S rDNA; and ITS1). From 2008 to 2011, 18 nematode isolates not belonging to the genus Trichinella were collected from different host species. Eleven of these isolates were successfully identified at the species, genus or superfamily level: larvae from two common kestrels, three hooded crows, a hen harrier and a domestic pig were identified as Toxocara cati; larvae from a badger were identified as Toxocara canis; larvae from a domestic pig were identified as a free-living nematode of the genus Panagrolaimus; larvae from a wild boar were identified as belonging to the Metastrongylus genus; and larvae from a rough-legged buzzard were identified as belonging to the superfamily Filarioidea. The recovery of nematodes belonging to genera other than Trichinella during routine meat inspection suggests that the persons performing the analyses need to be informed of the possibility of false positives and that a molecular-based identification system that allows for a rapid and reliable response must be adopted (i.e., a DNA barcoding-like system).

  16. Molecular and morphological analysis of an Antarctic tardigrade, Acutuncus antarcticus

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    Hiroshi Kagoshima

    2013-03-01

    Full Text Available We isolated a species of tardigrade from moss samples collected from Langhovde and Skarvsnes, near Syowa station, East Antarctic, from which we cultured a parthenogenetic strain in Petri dishes with co-occurring cyanobacteria or green algae. This culture was maintained at both 4 and 10ºC, though the latter proved more suitable for growth. Eggs were laid free, rather than in exuviae. We isolated the 18S rRNA sequences from this tardigrade, identical to that of Acutuncus antarcticus from King George island, South Shetland islands. Morphological analyses via both light and scanning electron microscopy also show general agreement with characteristics of A. antarcticus: dorsal and ventral apophyses for the insertion of stylet muscles and dorsal longitudinal thickening on the anterior part of buccal tube; presence of pharyngeal apophyses, two macroplacoids and absence of a microplacoid; the surface structure of egg; and claw shape. Peribuccal lamellae were absent, but six oval swellings surrounded the mouth opening. An additional study of moss pillars from lake Hotoke-ike, Skarvsnes, proved the existence of the same tardigrade taxon living at the bottom of the lake.

  17. Tracking adaptive evolution in the structure, function and molecular phylogeny of haemoglobin in non-Antarctic notothenioid fish species

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    Verde, Cinzia; Parisi, Elio; di Prisco, Guido

    2006-04-01

    With the notable exception of Antarctic icefishes, haemoglobin (Hb) is present in all vertebrates. In polar fish, Hb evolution has included adaptations with implications at the biochemical, physiological and molecular levels. Cold adaptation has been shown to be also linked to small changes in primary structure and post-translational modifications in proteins, including hydrophobic remodelling and increased flexibility. A wealth of knowledge is available on the oxygen-transport system of fish inhabiting Antarctic waters, but very little is known on the structure and function of Hb of non-Antarctic notothenioid fishes. The comparison of the biochemical and physiological adaptations between cold-adapted and non-cold-adapted species is a powerful tool to understand whether (and to what extent) extreme environments require specific adaptations or simply select for phenotypically different life styles. This study focuses on structure, function and molecular phylogeny of Hb in Antarctic and non-Antarctic notothenioid fishes. The rationale is to use the primary structure of Hb as tool of choice to gain insight into the pathways of the evolution history of α and β globins of notothenioids and also as a basis for reconstructing the phylogenetic relationships among Antarctic and non-Antarctic species.

  18. Toxocara nematodes in stray cats from shiraz, southern iran: intensity of infection and molecular identification of the isolates.

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    Fattaneh Mikaeili

    2013-12-01

    Full Text Available Toxocara is a common nematode of cats in different parts of Iran. Despite the close association of cats with human, no attempt has been done so far for molecular identification of this nematode in the country. Therefore, current study was performed on identification of some isolates of Toxocara from stray cats in Shiraz, Fars Province, Southern Iran, based on morphological and molecular approaches, and also determination of intensity of infection.This cross-sectional study was carried out on 30 stray cats trapped from different geographical areas of Shiraz in 2011. Adult male and female worms were recovered from digestive tract after dissection of cats. Morphological features using existing keys and PCR-sequencing of ITS-rDNA region and pcox1 mitochondrial l gene were applied for the delineating the species of the parasites.Eight out of 30 cats (26.7% were found infected with Toxocara nematodes. All the isolates were confirmed as Toxocara cati based on morphological features and the sequence of ribosomal and mitochondrial targets. Intensity of infection ranged from one to a maximum of 39 worms per cat, with a mean of 10.25±12.36, and higher abundance of female nematodes.The most prevalent ascaridoid nematode of stray cats in the study area was T. cati and female nematodes were more abundant than that of males. This issue has important role in spreading of eggs in the environment and impact on human toxocariasis.

  19. Molecular signals regulating translocation and toxicity of graphene oxide in the nematode Caenorhabditis elegans

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    Wu, Qiuli; Zhao, Yunli; Li, Yiping; Wang, Dayong

    2014-09-01

    Both in vitro and in vivo studies have demonstrated the toxic effects of graphene oxide (GO). However, the molecular basis for the translocation and toxicity of GO is still largely unclear. In the present study, we employed an in vivo Caenorhabditis elegans assay system to identify molecular signals involved in the control of the translocation and toxicity of GO. We identified 7 genes whose mutations altered both the translocation and toxicity of GO. Mutations of the hsp-16.48, gas-1, sod-2, sod-3, and aak-2 genes caused greater GO translocation into the body and toxic effects on both primary and secondary targeted organs compared with wild type; however, mutations of the isp-1 and clk-1 genes resulted in significantly decreased GO translocation into the body and toxicity on both primary and secondary targeted organs compared with wild-type. Moreover, mutations of the hsp-16.48, gas-1, sod-2, sod-3, and aak-2 genes caused increased intestinal permeability and prolonged mean defecation cycle length in GO-exposed nematodes, whereas mutations of the isp-1 and clk-1 genes resulted in decreased intestinal permeability in GO-exposed nematodes. Therefore, for the underlying mechanism, we hypothesize that both intestinal permeability and defecation behavior may have crucial roles in controlling the functions of the identified molecular signals. The molecular signals may further contribute to the control of transgenerational toxic effects of GO. Our results provide an important insight into understanding the molecular basis for the in vivo translocation and toxicity of GO.Both in vitro and in vivo studies have demonstrated the toxic effects of graphene oxide (GO). However, the molecular basis for the translocation and toxicity of GO is still largely unclear. In the present study, we employed an in vivo Caenorhabditis elegans assay system to identify molecular signals involved in the control of the translocation and toxicity of GO. We identified 7 genes whose mutations

  20. Phenotypic and molecular evaluation of cotton hairy roots as a model system for studying nematode resistance

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    The cellular mechanisms that mediate resistance of allotetraploid cotton (Gossypium spp.) to root-knot nematode (Meloidogyne incognita) and reniform nematode (Rotylenchulus reniformis) are poorly understood. Here, Agrobacterium rhizogenes-induced hairy roots were investigated as a possible research...

  1. Microbial ecology and nematode control in natural ecosystems. Building coherence between microbial ecology and molecular mechanisms

    NARCIS (Netherlands)

    Costa, S.R.; Putten, van der W.H.; Kerry, B.R.

    2011-01-01

    Plant-parasitic nematodes have traditionally been studied in agricultural systems, where they can be pests of importance on a wide range of crops. Nevertheless, nematode ecology in natural ecosystems is receiving increasing interest because of the role of nematodes in soil food webs, nutrient cyclin

  2. Divergence between Antarctic and South American marine invertebrates: What molecular biology tells us about Scotia Arc geodynamics and the intensification of the Antarctic Circumpolar Current

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    Poulin, Elie; González-Wevar, Claudio; Díaz, Angie; Gérard, Karin; Hüne, Mathias

    2014-12-01

    Continental drift processes such as major gateway openings have been historically advocated to explain the distribution of marine benthic taxa in the Southern Ocean (SO). The separation between Antarctic Peninsula and the southern tip of South America together with the onset of the Antarctic Circumpolar Current (ACC) represent the final step for the complete isolation of the Antarctic region. However, there is still controversy concerning the timing and mode of this process, and especially about the role of the Scotia Arc geodynamics in the development of a fully deep and intensified ACC circulation. Based on mitochondrial Cytochrome c Oxidase Subunit I (COI) sequences obtained from different taxa, we performed molecular comparisons between Antarctic and South American relatives to provide independent time estimations of Antarctica's isolation. We include in the analyses congeneric Antarctic and Patagonian near-shore marine benthic invertebrates including indirect developers (Nacella, Yoldia, Sterechinus, and Parbolasia) and brooders (Xymenopsis and Trophonella). Considering the levels of genetic differentiation between relatives from both regions and assuming the molecular clock hypothesis, we estimated the onset of their respective divergence. On one hand, similar levels of genetic distance in broadcast-spawners (7%-8.3%) support the hypothesis that the development of an effective barrier between Antarctica and South America occurred almost simultaneously for these groups. Divergence time estimations based on specific substitution rates indicate that the separation occurred near the Mio-Pliocene transition, long after the physical separation of both continents. Genetic distance and divergence time estimation in direct developers indicate an older separation time, close to the mid-Miocene. Even when the analyzed groups included both broadcast-spawners and brooder organisms, the divergence between Antarctic and South America lineages rather than being related to

  3. Impact of gastrointestinal parasitic nematodes of sheep, and the role of advanced molecular tools for exploring epidemiology and drug resistance - an Australian perspective.

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    Roeber, Florian; Jex, Aaron R; Gasser, Robin B

    2013-05-27

    Parasitic nematodes (roundworms) of small ruminants and other livestock have major economic impacts worldwide. Despite the impact of the diseases caused by these nematodes and the discovery of new therapeutic agents (anthelmintics), there has been relatively limited progress in the development of practical molecular tools to study the epidemiology of these nematodes. Specific diagnosis underpins parasite control, and the detection and monitoring of anthelmintic resistance in livestock parasites, presently a major concern around the world. The purpose of the present article is to provide a concise account of the biology and knowledge of the epidemiology of the gastrointestinal nematodes (order Strongylida), from an Australian perspective, and to emphasize the importance of utilizing advanced molecular tools for the specific diagnosis of nematode infections for refined investigations of parasite epidemiology and drug resistance detection in combination with conventional methods. It also gives a perspective on the possibility of harnessing genetic, genomic and bioinformatic technologies to better understand parasites and control parasitic diseases.

  4. Molecular characterization of the beet cyst nematode (Heterodera schachtii) resistance locus Hs1.

    NARCIS (Netherlands)

    Salentijn, E.M.J.

    1995-01-01

    The white beet cyst nematode (BCN), Heterodera schachtii Schm. is a serious pest in sugar beet ( B. vulgaris L.) cultivation and is widely distributed throughout most of the beet-growing areas in the world (Cooke 1987). The economical losses due to infestation with the nematode are considerable (app

  5. Applications of single-strand conformation polymorphism (SSCP) to taxonomy, diagnosis, population genetics and molecular evolution of parasitic nematodes.

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    Gasser, R B; Chilton, N B

    2001-11-22

    The analysis of genetic variation in parasitic nematodes has important implications for studying aspects of taxonomy, diagnosis, population genetics, drug resistance and molecular evolution. This article highlights some applications of PCR-based single-strand conformation polymorphism (SSCP) for the analysis of sequence variation in individual parasites (and their populations) to address some of these areas. It also describes the principles and advantages of SSCP, and provides some examples for future applications in parasitology.

  6. Physiological and molecular mechanisms of salt and water homeostasis in the nematode Caenorhabditis elegans.

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    Choe, Keith P

    2013-08-01

    Intracellular salt and water homeostasis is essential for all cellular life. Extracellular salt and water homeostasis is also important for multicellular organisms. Many fundamental mechanisms of compensation for osmotic perturbations are well defined and conserved. Alternatively, molecular mechanisms of detecting salt and water imbalances and regulating compensatory responses are generally poorly defined for animals. Throughout the last century, researchers studying vertebrates and vertebrate cells made critical contributions to our understanding of osmoregulation, especially mechanisms of salt and water transport and organic osmolyte accumulation. Researchers have more recently started using invertebrate model organisms with defined genomes and well-established methods of genetic manipulation to begin defining the genes and integrated regulatory networks that respond to osmotic stress. The nematode Caenorhabditis elegans is well suited to these studies. Here, I introduce osmoregulatory mechanisms in this model, discuss experimental advantages and limitations, and review important findings. Key discoveries include defining genetic mechanisms of osmolarity sensing in neurons, identifying protein damage as a sensor and principle determinant of hypertonic stress resistance, and identification of a putative sensor for hypertonic stress associated with the extracellular matrix. Many of these processes and pathways are conserved and, therefore, provide new insights into salt and water homeostasis in other animals, including mammals.

  7. Molecular systematics, phylogeny and ecology of anisakid nematodes of the genus Anisakis Dujardin, 1845: an update

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    Mattiucci S.

    2006-06-01

    Full Text Available Advances in the taxonomy and ecological aspects concerning geographical distribution and hosts of the so far genetically recognised nine taxa of the nematodes belonging to genus Anisakis (i.e. A. pegreffii, A. simplex s.s., A. simplex C, A. typica, A. ziphidarum, Anisakis sp., A. physeteris, A. brevispiculata and A. paggiae are here summarized. Genetic differentiation and phylogenetic relationships inferred from allozyme (20 enzyme-loci and mitochondrial (sequences of cox-2 gene markers, are revised and compared. The two genetic analyses are congruent in depicting their phylogenetic relationships. Two main clusters are showed to exist in the obtained trees, one encompassing the species A. pegreffii, A. simplex s.s., A. simplex C, A. typica, A. ziphidarum and Anisakis sp.; while, the second including A. physeteris, A. brevispiculata and A. paggiae. The existence of two clades is also supported by their morphological differentiation in adult and larval morphology. Comparison of phylogenetic relationships among Anisakis spp. with those currently available for their cetacean definitive hosts suggests parallelism between host and parasite phylogenetic tree topologies. Preliminary data for reconstruction of a possible co-evolutionary scenario between cetacean hosts and their Anisakis endoparasites suggests that cospeciation and host-switching events may have accompanied the evolution of this group of parasites. Finally, genetic/molecular markers for the identification of the so far genetically recognized taxa of Anisakis at any life-stage and both sexes were given also in relation to human anisakiosis is discussed.

  8. Molecular and morphological characterization of heterorhabditid entomopathogenic nematodes from the tropical rainforest in Brazil

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    Claudia Dolinski

    2008-03-01

    Full Text Available Despite massive losses of primary forest, the Amazonian rainforest remains an extremely rich source of biodiversity. In recent years, entomopathogenic nematodes (EPNs have been isolated from soil in various parts of the world and used successfully as biological control agents against numerous insect pests. Therefore, a sampling in the rainforest of Monte Negro, Rondônia, Brazil was conducted with the aim of discovering new strains and/or species of EPNs for future development as biological control agents. From 156 soil samples taken at nine collecting sites, 19 isolates were obtained, all of them belonging to the genus Heterorhabditis. Four strains were subjected to detailed morphological and molecular evaluation. Based on morphometrics and internal transcribed spacer (ITS sequence data, the strains LPP1, LPP2 and LPP4 were identified as Heterorhabditis indica, whereas LPP7 was considered Heterorhabditis baujardi. Comparative analysis of the ITS1 sequence of H. indica and H. baujardi isolates showed a polymorphic site for the restriction enzyme Tth 111 that could be used to distinguish the two species. Consequently, strains LPP1, LPP2, LPP3, LPP4, and LPP9 were identified as H. indica, whereas LPP5, LPP7, LPP8 and LPP10 were identified as H. baujardi.

  9. Copromicroscopic and molecular assays for the detection of cancer-causing parasitic nematode Spirocerca lupi.

    Science.gov (United States)

    Traversa, Donato; Avolio, Stefania; Modrý, David; Otranto, Domenico; Iorio, Raffaella; Aroch, Itamar; Cringoli, Giuseppe; Milillo, Piermarino; Albrechtová, Katka; Mihalca, Andrei D; Lavy, Eran

    2008-10-20

    Spirocerca lupi (Nematoda, Spirurida) is a life-threatening parasitic nematode of dogs that is presently emerging in several countries. Nonetheless, canine spirocercosis is neglected and underestimated, mainly due to diagnostic limitations inherent to clinico-pathologic, diagnostic imaging and laboratory methodologies. Given the significant benefit of improved diagnosis, the present work evaluated the reliability of a recently described copromicroscopic approach, the FLOTAC technique, as well as a PCR-based assay with that of traditional coproscopic techniques to diagnose S. lupi infection. Ninety-four faecal field samples were collected from two endemic areas (i.e. 29 and 65 from Kenya and Israel, respectively) and processed using different coproscopic examination techniques. In particular, set I (Kenyan samples) comprised the modified flotation with Sheather's sugar solution and merthiolate-iodine-formalin technique, while set II (Israeli samples) comprised a flotation technique with zinc sulphate solution, a modified sugar flotation procedure and the FLOTAC method. All samples were also subjected to a semi-nested PCR protocol specific for a region internal to the mitochondrial cytochrome c oxidase subunit 1 gene of S. lupi. The coproscopic examinations showed low sensitivity and high variability, demonstrating the unreliability of the conventional methods for detecting S. lupi eggs. Nonetheless, the FLOTAC technique scored the highest number of positives and significantly higher number of S. lupi eggs per microscopic field compared to the other coproscopic methods. Additionally, of the coproscopically negative samples, 9 (45%) Kenyan and 21 (38.2%) Israeli samples scored molecularly positive using the PCR-based approach. The potential implications and perspectives for canine spirocercosis of these coproscopic and molecular diagnostic methodologies evaluated herein are discussed.

  10. Molecular networks associated with host resistance to gastrointestional nematodes in cattle

    Science.gov (United States)

    Parasitism by gastrointestinal nematodes is a disease severely affecting productivity in ruminants. To unravel mechanisms of host resistance to parasitic infection, we characterized the jejunal transcriptome of the cattle populations displaying resistance phenotypes in response to experimental Coope...

  11. Molecular phylogenetics and the evolution of host plant associations in the nematode genus Fergusobia (Tylenchida: Fergusobiinae)

    Science.gov (United States)

    Fergusobia nematodes (Tylenchida: Fergusobiinae) and Fergusonina flies (Diptera: Fergusoninidae) are mutualists that develop together in galls formed in meristematic tissues of many species of the plant family Myrtaceae in Australasia. Evolutionary relationships of Fergusobia species were inferred f...

  12. A combined parasitological molecular approach for noninvasive characterization of parasitic nematode communities in wild hosts

    Science.gov (United States)

    Most hosts are concurrently or sequentially infected with multiple parasites, thus fully understanding interactions between individual parasite species and their hosts depends on accurate characterization of the parasite community. For parasitic nematodes, non-invasive methods for obtaining quantita...

  13. Metazoan Parasites of Antarctic Fishes.

    Science.gov (United States)

    Oğuz, Mehmet Cemal; Tepe, Yahya; Belk, Mark C; Heckmann, Richard A; Aslan, Burçak; Gürgen, Meryem; Bray, Rodney A; Akgül, Ülker

    2015-06-01

    To date, there have been nearly 100 papers published on metazoan parasites of Antarctic fishes, but there has not yet been any compilation of a species list of fish parasites for this large geographic area. Herein, we provide a list of all documented occurrences of monogenean, cestode, digenean, acanthocephalan, nematode, and hirudinean parasites of Antarctic fishes. The list includes nearly 250 parasite species found in 142 species of host fishes. It is likely that there are more species of fish parasites, which are yet to be documented from Antarctic waters.

  14. Molecular diagnostics of potato cyst nematodes (PCN) from the national survey

    Science.gov (United States)

    The potato cyst nematodes (PCN) Globodera rostochiensis and G. pallida are regulated pathogens of potato, a crop worth nearly $3.9 billion in the United States. Since the initial discovery of G. pallida in Idaho in 2006, extensive surveys of the major potato growing acreage have been carried out, to...

  15. Molecular Taxonomy, Phylogeny and Biogeography of nematodes belonging to the Trichinella genus

    Science.gov (United States)

    Studying parasites of the genus Trichinella provides scientists of today many advantages. This is a group of zoonotic nematodes that circulate freely among wildlife hosts with one in particular, Trichinella spiralis that is particularly well adapted to domestic swine. Indeed, recent reports suggest ...

  16. Phylogenetic relationships within major nematode clades based on multiple molecular markers

    NARCIS (Netherlands)

    Rybarczyk-Mydlowska, K.

    2013-01-01

    Nematodes are probably the most abundant Metazoans on our planet. They are present in densities of millions of individuals per square meter in soil and sediments. However, these inconspicuous animals are hardly known to the general public as most individuals are colorless and smaller than 1 mm. If p

  17. Effects of climatic changes on anisakid nematodes in polar regions

    Science.gov (United States)

    Rokicki, Jerzy

    2009-11-01

    Anisakid nematodes are common in Antarctic, sub-Antarctic, and Arctic areas. Current distributional knowledge of anisakids in the polar regions is reviewed. Climatic variables influence the occurrence and abundance of anisakids, directly influencing their free-living larval stages and also indirectly influencing their predominantly invertebrate (but also vertebrate) hosts. As these parasites can also be pathogenic for humans, the paucity of information available is a source of additional hazard. As fish are a major human dietary component in Arctic and Antarctic areas, and are often eaten without heat processing, a high risk of infection by anisakid larvae might be expected. The present level of knowledge, particularly relating to anisakid larval stages present in fishes, is far from satisfactory. Preliminary molecular studies have revealed the presence of species complexes. Contemporary climate warming is modifying the marine environment and may result in an extension of time during which anisakid eggs can persist and hatch, and of the time period during which newly hatched larvae remain viable. As a result there may be an increase in the extent of anisakid distribution. Continued warming will modify the composition of the parasitic nematode fauna of marine animals, due to changes in feeding habits, as the warming of the sea and any localised reduction in salinity (from freshwater runoff) can be expected to bring about changes in the species composition of pelagic and benthic invertebrates.

  18. Comparison of cryoconite organic matter composition from Arctic and Antarctic glaciers at the molecular-level

    Science.gov (United States)

    Pautler, Brent G.; Dubnick, Ashley; Sharp, Martin J.; Simpson, André J.; Simpson, Myrna J.

    2013-03-01

    Glacier surfaces are reservoirs that contain organic and inorganic debris referred to as cryoconite. Solar heating of this material results in the formation of water-filled depressions that are colonized by a variety of microbes and are hypothesized to play a role in carbon cycling in glacier ecosystems. Recent studies on cryoconite deposits have focused on their contribution to carbon fluxes to determine whether they are a net source or sink for atmospheric CO2. To better understand carbon cycling in these unique ecosystems, the molecular constituents of cryoconite organic matter (COM) require further elucidation. COM samples from four glaciers were analyzed by targeted extraction of plant- and microbial-derived biomarkers in conjunction with non-targeted NMR experiments to determine the COM composition and potential sources. Several molecular proxies were applied to assess COM degradation and microbial activity using samples from Greenland, the Canadian Arctic, and Antarctica. COM from Canadian (John Evans glacier) and Greenlandic (Leverett glacier) locations was more chemically heterogeneous than that from the Antarctic likely due to inputs from higher plants, mosses and Sphagnum as suggested by the solvent-extractable alkyl lipids and sterols and the detection of lignin- and Sphagnum-derived phenols after cupric oxide chemolysis. Solid-state 13C nuclear magnetic resonance (NMR) experiments highlighted the bulk chemical functional groups of COM allowing for a general assessment of its degradation stage from the alkyl/O-alkyl proxy whereas solution-state 1H NMR highlighted both microbial and plant contributions to base-soluble extracts from these COM samples. The dominance of 1H NMR signals from microbial protein/peptides in base-soluble extracts of COM from Antarctica (Joyce glacier and Garwood glacier), phospholipid fatty acid (PLFA) biomarker detection and the absence of plant-derived biomarkers in both the solvent and cupric oxide extracts suggests that this

  19. Screening and molecular classification of low-temperature protease from Antarctic microorganism and its characterization

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    107 strains producing protease were screened from 260 strains of Antarctic psychrophilic bacteria, among which proteolytic activity of five strains was more than 45 U ml-1. The 16S rRNA gene sequences homology and phylogenetic analysis of five Antarctic psychrophilic bacteria showed that NJ276、 NJ5-9、NJ16-70、NJ345 belonged to the described genus Pseudoalteromonas and NJ341belonged to the genus Colwellia. The growth and the protease characteristic of four Antarctic psychrophilic bacteria had been studied, and the result showed that the optimal temperature for growth and protease-producing of four strains was about 10 ℃. Their growth and protease-producing were still high during incubating 2-5 days. The maximum proteolytic activity occurred at pH 9 for four Antarctic psychrophilic bacteria. The optimal temperature of protease action of both strains NJ276 and NJ5-9 was about 50 ℃, however, the optimal temperature of protease action of both strains NJ341 and NJ345 was about 40 ℃, and their proteolytic activity under 0 ℃ exhibited nearly 30% of the maximum activity,but their thermal stabilities were weaker. These results indicated that proteases from NJ341 and NJ345 were low-temperature proteases.

  20. A molecular characterization of the agonist binding site of a nematode cys-loop GABA receptor

    Science.gov (United States)

    Kaji, Mark D; Kwaka, Ariel; Callanan, Micah K; Nusrat, Humza; Desaulniers, Jean-Paul; Forrester, Sean G

    2015-01-01

    Background and Purpose Cys-loop GABA receptors represent important targets for human chemotherapeutics and insecticides and are potential targets for novel anthelmintics (nematicides). However, compared with insect and mammalian receptors, little is known regarding the pharmacological characteristics of nematode Cys-loop GABA receptors. Here we have investigated the agonist binding site of the Cys-loop GABA receptor UNC-49 (Hco-UNC-49) from the parasitic nematode Haemonchus contortus. Experimental Approach We used two-electrode voltage-clamp electrophysiology to measure channel activation by classical GABA receptor agonists on Hco-UNC-49 expressed in Xenopus laevis oocytes, along with site-directed mutagenesis and in silico homology modelling. Key Results The sulphonated molecules P4S and taurine had no effect on Hco-UNC-49. Other classical Cys-loop GABAA receptor agonists tested on the Hco-UNC-49B/C heteromeric channel had a rank order efficacy of GABA > trans-4-aminocrotonic acid > isoguvacine > imidazole-4-acetic acid (IMA) > (R)-(−)-4-amino-3-hydroxybutyric acid [R(−)-GABOB] > (S)-(+)-4-amino-3-hydroxybutyric acid [S(+)-GABOB] > guanidinoacetic acid > isonipecotic acid > 5-aminovaleric acid (DAVA) (partial agonist) > β-alanine (partial agonist). In silico ligand docking revealed some variation in binding between agonists. Mutagenesis of a key serine residue in binding loop C to threonine had minimal effects on GABA and IMA but significantly increased the maximal response to DAVA and decreased twofold the EC50 for R(−)- and S(+)-GABOB. Conclusions and Implications The pharmacological profile of Hco-UNC-49 differed from that of vertebrate Cys-loop GABA receptors and insect resistance to dieldrin receptors, suggesting differences in the agonist binding pocket. These findings could be exploited to develop new drugs that specifically target GABA receptors of parasitic nematodes. PMID:25850584

  1. Morphology and molecular phylogeny of an Antarctic population of Paraholosticha muscicola (Kahl, 1932) Wenzel, 1953 (Ciliophora, Hypotricha)

    Science.gov (United States)

    Jung, Jae-Ho; Park, Kyung-Min; Min, Gi-Sik; Berger, Helmut; Kim, Sanghee

    2015-12-01

    The morphology of an Antarctic soil population of Paraholosticha muscicola, type species of Paraholosticha, is described from life and after protargol preparation. The data agree rather well with that of relevant descriptions, but the total variability of several features is relatively high in this species. Paraholosticha ovata and P. lichenicola are very likely junior synonyms. In addition, we sequenced the SSU rRNA gene of P. muscicola and thus we can estimate for the first time the phylogenetic position of a member of the Keronopsidae, the sole hypotrichs that divide in cysts. The molecular data basically support the position derived from morphological concepts, that is, P. muscicola branches off outside the Dorsomarginalia because kinety fragmentation and dorsomarginal rows are lacking. However, as in many other molecular analyses, discrepancies with morphology-based hypothesis are present. The misclassification of Paraholosticha and its sister-group Keronopsis in the Keronidae, with Kerona pediculus as type species, is discussed.

  2. Genetic and Molecular Epidemiological Characterization of a Novel Adenovirus in Antarctic Penguins Collected between 2008 and 2013.

    Directory of Open Access Journals (Sweden)

    Sook-Young Lee

    Full Text Available Antarctica is considered a relatively uncontaminated region with regard to the infectious diseases because of its extreme environment, and isolated geography. For the genetic characterization and molecular epidemiology of the newly found penguin adenovirus in Antarctica, entire genome sequencing and annual survey of penguin adenovirus were conducted. The entire genome sequences of penguin adenoviruses were completed for two Chinstrap penguins (Pygoscelis antarctica and two Gentoo penguins (Pygoscelis papua. The whole genome lengths and G+C content of penguin adenoviruses were found to be 24,630-24,662 bp and 35.5-35.6%, respectively. Notably, the presence of putative sialidase gene was not identified in penguin adenoviruses by Rapid Amplification of cDNA Ends (RACE-PCR as well as consensus specific PCR. The penguin adenoviruses were demonstrated to be a new species within the genus Siadenovirus, with a distance of 29.9-39.3% (amino acid, 32.1-47.9% in DNA polymerase gene, and showed the closest relationship with turkey adenovirus 3 (TAdV-3 in phylogenetic analysis. During the 2008-2013 study period, the penguin adenoviruses were annually detected in 22 of 78 penguins (28.2%, and the molecular epidemiological study of the penguin adenovirus indicates a predominant infection in Chinstrap penguin population (12/30, 40%. Interestingly, the genome of penguin adenovirus could be detected in several internal samples, except the lymph node and brain. In conclusion, an analysis of the entire adenoviral genomes from Antarctic penguins was conducted, and the penguin adenoviruses, containing unique genetic character, were identified as a new species within the genus Siadenovirus. Moreover, it was annually detected in Antarctic penguins, suggesting its circulation within the penguin population.

  3. Genetic and Molecular Epidemiological Characterization of a Novel Adenovirus in Antarctic Penguins Collected between 2008 and 2013

    Science.gov (United States)

    Lee, Sook-Young; Kim, Jeong-Hoon; Seo, Tae-Kun; No, Jin Sun; Kim, Hankyeom; Kim, Won-keun; Choi, Han-Gu; Kang, Sung-Ho; Song, Jin-Won

    2016-01-01

    Antarctica is considered a relatively uncontaminated region with regard to the infectious diseases because of its extreme environment, and isolated geography. For the genetic characterization and molecular epidemiology of the newly found penguin adenovirus in Antarctica, entire genome sequencing and annual survey of penguin adenovirus were conducted. The entire genome sequences of penguin adenoviruses were completed for two Chinstrap penguins (Pygoscelis antarctica) and two Gentoo penguins (Pygoscelis papua). The whole genome lengths and G+C content of penguin adenoviruses were found to be 24,630–24,662 bp and 35.5–35.6%, respectively. Notably, the presence of putative sialidase gene was not identified in penguin adenoviruses by Rapid Amplification of cDNA Ends (RACE-PCR) as well as consensus specific PCR. The penguin adenoviruses were demonstrated to be a new species within the genus Siadenovirus, with a distance of 29.9–39.3% (amino acid, 32.1–47.9%) in DNA polymerase gene, and showed the closest relationship with turkey adenovirus 3 (TAdV-3) in phylogenetic analysis. During the 2008–2013 study period, the penguin adenoviruses were annually detected in 22 of 78 penguins (28.2%), and the molecular epidemiological study of the penguin adenovirus indicates a predominant infection in Chinstrap penguin population (12/30, 40%). Interestingly, the genome of penguin adenovirus could be detected in several internal samples, except the lymph node and brain. In conclusion, an analysis of the entire adenoviral genomes from Antarctic penguins was conducted, and the penguin adenoviruses, containing unique genetic character, were identified as a new species within the genus Siadenovirus. Moreover, it was annually detected in Antarctic penguins, suggesting its circulation within the penguin population. PMID:27309961

  4. Molecular diversity of fungal phylotypes co-amplified alongside nematodes from coastal and deep-sea marine environments.

    Directory of Open Access Journals (Sweden)

    Punyasloke Bhadury

    Full Text Available Nematodes and fungi are both ubiquitous in marine environments, yet few studies have investigated relationships between these two groups. Microbial species share many well-documented interactions with both free-living and parasitic nematode species, and limited data from previous studies have suggested ecological associations between fungi and nematodes in benthic marine habitats. This study aimed to further document the taxonomy and distribution of fungal taxa often co-amplified from nematode specimens. A total of 15 fungal 18S rRNA phylotypes were isolated from nematode specimens representing both deep-sea and shallow water habitats; all fungal isolates displayed high pairwise sequence identities with published data in Genbank (99-100% and unpublished high-throughput 454 environmental datasets (>95%. BLAST matches indicate marine fungal sequences amplified in this study broadly represent taxa within the phyla Ascomycota and Basidiomycota, and several phylotypes showed robust groupings with known taxa in phylogenetic topologies. In addition, some fungal phylotypes appeared to be present in disparate geographic habitats, suggesting cosmopolitan distributions or closely related species complexes in at least some marine fungi. The present study was only able to isolate fungal DNA from a restricted set of nematode taxa; further work is needed to fully investigate the taxonomic scope and function of nematode-fungal interactions.

  5. Antarctic clouds

    OpenAIRE

    Lachlan-Cope, Tom

    2010-01-01

    Sensitivity studies with global climate models show that, by their influence on the radiation balance, Antarctic clouds play a major role in the climate system, both directly at high southern latitudes and indirectly globally, as the local circulation changes lead to global teleconnections. Unfortunately, observations of cloud distribution in the Antarctic are limited and often of low quality because of the practical difficulty in observing clouds in the harsh Antarctic environment. The best ...

  6. Molecular basis for identification of species/isolates of gastrointestinal nematode parasites

    Institute of Scientific and Technical Information of China (English)

    Ahmed M; Singh MN; Bera AK; Bandyopadhyay S; Bhattacharya D

    2011-01-01

    Gastrointestinal(GI)parasitism is the most serious constraint throughout the world in small ruminants which causes significant production loss in animals.GI parasites are major contributor to reduce productivity in terms of meat, milk and wool in animals. Control ofGI parasite is done primarily by anthelmintic treatment where choice and schedule of treatment is done after identification and quantitation of individual parasite. Identification ofGI parasites is done through microscopic method by identifying specific morphological characteristics of egg and larva (L3). Since most of parasite eggs are having similar morphological characteristics, identification up to species level through microscopy is not possible in most of cases. To address this issue, molecular techniques are the viable alternative for identification of species as well as molecular level differences within a species (isolates) of parasites. DifferentDNA based molecular techniquesviz.PCR, AFLP, RAPD, RFLP, PCR-SSCP, real timePCR, DNAmicroarrayetc. have been used for identification and to assess the genetic diversity among parasite population. For identification of species, the characteristic sequence of genomicDNAof different species should differ to allow the delineation of species, but at the same time, no/minor variation within the species should exist. In contrast, for purpose of identifying population variants (strains/isolates), a considerable degree of variation in the sequence should exist within a species. Various target regions, including nuclear ribosomal DNA (rDNA), mitochondrial DNA(mtDNA) or repetitiveDNA elements (microsatellite loci), which show considerable variation in the number of repeats within individuals have been employed to achieve the identification of parasites species or strain.

  7. [Research Progress on Genetic Diversity in Animal Parasitic Nematodes].

    Science.gov (United States)

    YIN, Fang-yuan; LI, Fa-cai; ZHAO, Jun-long; HU, Min

    2015-10-01

    The development of molecular genetic markers for parasitic nematodes has significant implications in fundamental and applied research in Veterinary Parasitology. Knowledge on genetic diversity of nematodes would not only provide a theoretical basis for understanding the spread of drug-resistance alleles, but also have implications in the development of nematode control strategies. This review discusses the applications of molecular genetic markers (RFLP, RAPD, PCR-SSCP, AFLP, SSR and mitochondrial DNA) in research on the genetic diversity of parasitic nematodes.

  8. Acid phosphatase-1 1, a molecular marker tightly linked to root-knot nematode resistance in tomato.

    NARCIS (Netherlands)

    Aarts, J.M.M.J.G.

    1993-01-01

    Root knot nematode resistance in tomato is a genetic trait which is determined by a single dominant gene ( Mi ) on chromosome 6 of tomato. Information about the mRNA or protein product is completely lacking, which precludes the cloning of Mi by conventional strategies based on gene expression. Howev

  9. Morphological and molecular observations on the cereal cyst nematode Heterodera filipjevi from the Volga and South Ural regions of Russia

    Science.gov (United States)

    During 2010-2012, a survey was conducted to determine the distribution and species diversity of the cereal cyst nematode Heterodera filipjevi within the Volga and South Ural regions of the Russian Federation. A total of 270 soil samples were collected. Seven populations of CCN were found in the rhiz...

  10. Molecular characteristics and efficacy of 16D10 siRNAs in inhibiting root-knot nematode infection in transgenic grape hairy roots.

    Directory of Open Access Journals (Sweden)

    Yingzhen Yang

    Full Text Available Root-knot nematodes (RKNs infect many annual and perennial crops and are the most devastating soil-born pests in vineyards. To develop a biotech-based solution for controlling RKNs in grapes, we evaluated the efficacy of plant-derived RNA interference (RNAi silencing of a conserved RKN effector gene, 16D10, for nematode resistance in transgenic grape hairy roots. Two hairpin-based silencing constructs, containing a stem sequence of 42 bp (pART27-42 or 271 bp (pART27-271 of the 16D10 gene, were transformed into grape hairy roots and compared for their small interfering RNA (siRNA production and efficacy on suppression of nematode infection. Transgenic hairy root lines carrying either of the two RNAi constructs showed less susceptibility to nematode infection compared with control. Small RNA libraries from four pART27-42 and two pART27-271 hairy root lines were sequenced using an Illumina sequencing technology. The pART27-42 lines produced hundred times more 16D10-specific siRNAs than the pART27-271 lines. On average the 16D10 siRNA population had higher GC content than the 16D10 stem sequences in the RNAi constructs, supporting previous observation that plant dicer-like enzymes prefer GC-rich sequences as substrates for siRNA production. The stems of the 16D10 RNAi constructs were not equally processed into siRNAs. Several hot spots for siRNA production were found in similar positions of the hairpin stems in pART27-42 and pART27-271. Interestingly, stem sequences at the loop terminus produced more siRNAs than those at the stem base. Furthermore, the relative abundance of guide and passenger single-stranded RNAs from putative siRNA duplexes was largely correlated with their 5' end thermodynamic strength. This study demonstrated the feasibility of using a plant-derived RNAi approach for generation of novel nematode resistance in grapes and revealed several interesting molecular characteristics of transgene siRNAs important for optimizing plant RNAi

  11. Antarctic Entomology.

    Science.gov (United States)

    Chown, Steven L; Convey, Peter

    2016-01-01

    The Antarctic region comprises the continent, the Maritime Antarctic, the sub-Antarctic islands, and the southern cold temperate islands. Continental Antarctica is devoid of insects, but elsewhere diversity varies from 2 to more than 200 species, of which flies and beetles constitute the majority. Much is known about the drivers of this diversity at local and regional scales; current climate and glacial history play important roles. Investigations of responses to low temperatures, dry conditions, and varying salinity have spanned the ecological to the genomic, revealing new insights into how insects respond to stressful conditions. Biological invasions are common across much of the region and are expected to increase as climates become warmer. The drivers of invasion are reasonably well understood, although less is known about the impacts of invasion. Antarctic entomology has advanced considerably over the past 50 years, but key areas, such as interspecific interactions, remain underexplored.

  12. Antarctic Fishes.

    Science.gov (United States)

    Eastman, Joseph T.; DeVries, Arthur L.

    1986-01-01

    Explains the adaptations to Antarctic waters that Notothenioidei, a group of advanced bony fishes, have exhibited. Discusses the fishes' mechanisms of production of antifreeze properties and their capacities for neutral buoyancy in water. (ML)

  13. Nematode-trapping fungi eavesdrop on nematode pheromones.

    Science.gov (United States)

    Hsueh, Yen-Ping; Mahanti, Parag; Schroeder, Frank C; Sternberg, Paul W

    2013-01-07

    The recognition of molecular patterns associated with specific pathogens or food sources is fundamental to ecology and plays a major role in the evolution of predator-prey relationships. Recent studies showed that nematodes produce an evolutionarily highly conserved family of small molecules, the ascarosides, which serve essential functions in regulating nematode development and behavior. Here, we show that nematophagous fungi, natural predators of soil-dwelling nematodes, can detect and respond to ascarosides. Nematophagous fungi use specialized trapping devices to catch and consume nematodes, and previous studies demonstrated that most fungal species do not produce traps constitutively but rather initiate trap formation in response to their prey. We found that ascarosides, which are constitutively secreted by many species of soil-dwelling nematodes, represent a conserved molecular pattern used by nematophagous fungi to detect prey and trigger trap formation. Ascaroside-induced morphogenesis is conserved in several closely related species of nematophagous fungi and occurs only under nutrient-deprived conditions. Our results demonstrate that microbial predators eavesdrop on chemical communication among their metazoan prey to regulate morphogenesis, providing a striking example of predator-prey coevolution. We anticipate that these findings will have broader implications for understanding other interkingdom interactions involving nematodes, which are found in almost any ecological niche on Earth.

  14. Molecular variation of antarctic grass Deschampsia antarctica Desv. from King George Island (Antarctica

    Directory of Open Access Journals (Sweden)

    Katarzyna J. Chwedorzewska

    2011-01-01

    Full Text Available Deschampsia antarctica Desv. plants collected on King George Islands (Antarctica at two localities that differ in topographic and nutrition conditions exhibited morphological variation that differentiated plants of both locations. The molecular variation characteristic to individuals of both sites was tested using AFLP approach in order to verify whether morphological variation characteristic to the plants resulted from environmental factors or possibly from differences at the DNA level. Four primer pair combinations were used to generate 339 AFLP fragments, 132 of which were polymorphic and allowed evaluation of genetic relationships among D. antarctica individuals. Chi-square test revealed that only 12 signals were discriminative for the plants from both locations. Cluster analysis conducted on these AFLP fragments demonstrated that plants from the location rich in biogenes were more polymorphic than those from poor one. Our data suggest that the phenotypic variation specific to plants of both locations seem to be the result of adaptation to the environmental conditions like soil and moisture rather than reflect genetic differences.

  15. Preferred use of bacteria over phytoplankton by deep-sea nematodes in polar regions

    NARCIS (Netherlands)

    Ingels, J.; Driessche, Van den P.; Mesel, de I.G.; Vanhove, S.; Moens, T.; Vanreusel, A.

    2010-01-01

    The present study explored the selective feeding properties of Antarctic and Arctic deep-sea nematodes within an experimental setup. Nematodes are assumed to play an important role in the carbon flux within the polar bathyal food webs, but knowledge about their natural diets is limited. For the firs

  16. Biodiversity and community structure of freeliving marine nematodes from the Larsemann Ice Shelf, East Antarctica

    Digital Repository Service at National Institute of Oceanography (India)

    Ingole, B.S.; Singh, R.

    be their part of survival strategy in the harsh Antarctic environment. Keywords: East Antarctica, Larsemann Ice Shelf, nematodes, Paralinhomoeus sp., Sabatieria sp., subtidal meiofauna. Introduction STUDIES on Antarctic benthos have largely described... Sphaerolaimus sp. + + + Diplopeltis sp. + – – Sabatieria sp. + + + Cervonema sp. + – – Chromadorella sp. + – + Southerniella sp. + – – Metalinhomoeus sp. + + + Tricoma sp. + – – Unidentified sp. + + + Synonchium sp. + + – Terschellingia sp...

  17. Cyst nematode-induced changes in plant development

    NARCIS (Netherlands)

    Goverse, A.

    1999-01-01

    This thesis describes a first attempt to investigate the biological activity of cyst nematode secretions on plant cell proliferation and the molecular mechanisms underlying feeding cell development in plant roots upon cyst nematode infection.To investigate the role of nematode secretions in feeding

  18. Root-knot nematodes

    NARCIS (Netherlands)

    Karssen, G.; Wesemael, W.M.L.; Moens, M.

    2013-01-01

    Plant-parasitic nematodes devastate crops worldwide, in turn impacting international trade, social and economic development. Effective control of nematodes is essential for crop protection, and requires an understanding of nematode biology, taxonomy, population dynamics and sampling methods. Providi

  19. Developing sustainable systems for nematode management.

    Science.gov (United States)

    Barker, K R; Koenning, S R

    1998-01-01

    Early researchers identified key concepts and developed tactics for multiple-option management of nematodes. Although the emphasis on integrated pest management over the past three decades has promoted strategies and tactics for nematode management, comprehensive studies on the related soil biology-ecology are relatively recent. Traditional management tactics include host resistance (where available), cultural tactics such as rotation with nonhosts, sanitation and avoidance, and destruction of residual crop roots, and the judicious use of nematicides. There have been advances in biological control of nematodes, but field-scale exploitation of this tactic remains to be realized. New technologies and resources are currently becoming central to the development of sustainable systems for nematode-pest-crop management: molecular diagnostics for nematode identification, genetic engineering for host resistance, and the elucidation and application of soil biology for general integrated cropping systems. The latter strategy includes the use of nematode-pest antagonistic cover crops, animal wastes, and limited tillage practices that favor growth-promoting rhizobacteria, earthworms, predatory mites, and other beneficial organisms while suppressing parasitic nematodes and other plant pathogens. Certain rhizobacteria may induce systemic host resistance to nematodes and, in some instances, to foliage pathogens. The systems focusing on soil biology hold great promise for sustainable crop-nematode management, but only a few research programs are currently involved in this labor-intensive endeavor.

  20. First Report of the Spiral Nematode Rotylenchus incultus (Nematoda: Hoplolaimidae) from Cultivated Olive in Tunisia, with Additional Molecular Data on Rotylenchus eximius

    Science.gov (United States)

    Guesmi-Mzoughi, Ilhem; Archidona-Yuste, Antonio; Cantalapiedra-Navarrete, Carolina; Regaieg, Hajer; Horrigue-Raouani, Najet; Palomares-Rius, Juan E.; Castillo, Pablo

    2016-01-01

    Spiral nematode species of the genus Rotylenchus have been reported on olive (Olea europaea L.) in several Mediterranean countries (Castillo et al., 2010; Ali et al., 2014). Nematological surveys for plant-parasitic nematodes on olive trees were carried out in Tunisia between 2013 and 2014, and two nematode species of Rotylenchus were collected from the rhizosphere of olive cv. Chemlali in several localities of Tunisia (Tables 1,2Table 1Rotylenchus eximius Siddiqi, 1964 and R. incultus Sher, 1965 sampled in olive cv. Chemlali in Tunisia and sequences used in this study.Table 2Morphometrics of Rotylenchus incultus Sher, 1965 from olive cv. Chemlali in Tunisia.a). Twenty-two soil samples of 3 to 4 kg were collected with a shovel from the upper 50 cm of soil from arbitrarily chosen olive trees. Nematodes were extracted from 500 cm3 of soil by centrifugal flotation method (Coolen, 1979). Specimens were heat killed by adding hot 4% formaldehyde solution and processed to pure glycerin using the De Grisse’s (1969) method. Measurements were done using a drawing tube attached to a Zeiss III compound microscope. Nematode DNA was extracted from single individuals and PCR assays were conducted as described by Castillo et al. (2003). Moderate-to-low soil populations of these spiral nematodes were detected (5.5–11.5, 1.5–5.0 individuals/500 cm3 of soil, respectively). This prompted us to undertake a detailed morphological and molecular comparative study with previous reported data. Morphological and molecular analyses of females identified these species as Rotylenchus eximius Siddiqi, 1964, and Rotylenchus incultus Sher, 1965. The morphology of R. eximius females (five specimens studied) was characterized by having a hemispherical lip region clearly off set, with four to five annuli, body without longitudinal striations, lateral fields areolated in the pharyngeal region only, stylet 32 to 36 μm long, and broadly rounded tail. The morphology of R. incultus females (51

  1. Conserved nematode signalling molecules elicit plant defenses and pathogen resistance

    OpenAIRE

    Manosalva, P; Manohar, M; von Reuss, S.; Chen, S.; Koch, A; Kaplan, F; Choe, A.; Micikas, R.; X. Wang; Kogel, K.; Sternberg, P.; Williamson, V; Schroeder, D; Klessig, F.

    2015-01-01

    Plant-defense responses are triggered by perception of conserved microbe-associated molecular patterns (MAMPs), for example, flagellin or peptidoglycan. However, it remained unknown whether plants can detect conserved molecular patterns derived from plant-parasitic animals, including nematodes. Here we show that several genera of plant-parasitic nematodes produce small molecules called ascarosides, an evolutionarily conserved family of nematode pheromones. Picomolar to micromolar concentratio...

  2. Morphological and molecular analyses of the spiruroid nematode, Falcaustra araxiana Massino, 1924 (= Spironoura araxiana) from the European pond turtle (Emys orbicularis).

    Science.gov (United States)

    Rajabloo, M; Sharifiyazdi, H; Namazi, F; Shayegh, H; Rakhshandehroo, E; Farjanikish, G

    2016-04-01

    There is little information on the phylogenetic position and life cycle of family Kathlaniidae. Falcaustra araxiana is a member of this family which infects the large intestine of the European pond turtle (Emys orbicularis). In the present study, morphological data and molecular analyses based on the 18S rDNA were performed on different types of F. araxiana originating from the large intestine and gastric nodules in the turtle. Morphological data revealed both larvae and adult stages in the gastric nodules. In addition, all nematodes recovered in the large intestine were adult worms. GenBank accession numbers KM200715 and KM200716 were provided for adult F. araxiana located in the intestine and stomach, respectively, of E. orbicularis. The results of sequencing proved that these two types are completely similar. Accordingly, it can be hypothesized that nodule formation is a part of the life cycle of the parasite or a survival strategy. Furthermore, F. araxiana develops to the adult stage in the gastric mucosa prior to migrating to the large intestine. Phylogenetic analysis revealed that F. araxiana unexpectedly branched away from other members of the superfamily Seuratoidea (Truttaedacnitis truttae, Cucullanus robustus and C. baylisi) and showed a closer relationship with Paraquimperia africana, a member of the Ascaridoidea. It seems that phylogenetic reconstruction for the present parasite needs more detailed morphology, life cycle and molecular studies.

  3. Integrative taxonomy of the stunt nematodes of the genera Bitylenchus and Tylenchorhynchus (Nematoda, Telotylenchidae) with description of two new species and a molecular phylogeny

    Science.gov (United States)

    The genera Tylenchorhynchus Cobb, 1913 and Bitylenchus Filipjev, 1934 contain 104 and 29 valid species, respectively, of plant-parasitic nematodes collectively known as "stunt nematodes”. Stunt nematodes have a broad geographical distribution in several continents and some species damage agricultur...

  4. Molecular characterization and phylogeny of whipworm nematodes inferred from DNA sequences of cox1 mtDNA and 18S rDNA.

    Science.gov (United States)

    Callejón, Rocío; Nadler, Steven; De Rojas, Manuel; Zurita, Antonio; Petrášová, Jana; Cutillas, Cristina

    2013-11-01

    A molecular phylogenetic hypothesis is presented for the genus Trichuris based on sequence data from the mitochondrial cytochrome c oxidase 1 (cox1) and ribosomal 18S genes. The taxa consisted of different described species and several host-associated isolates (undescribed taxa) of Trichuris collected from hosts from Spain. Sequence data from mitochondrial cox1 (partial gene) and nuclear 18S near-complete gene were analyzed by maximum likelihood and Bayesian inference methods, as separate and combined datasets, to evaluate phylogenetic relationships among taxa. Phylogenetic results based on 18S ribosomal DNA (rDNA) were robust for relationships among species; cox1 sequences delimited species and revealed phylogeographic variation, but most relationships among Trichuris species were poorly resolved by mitochondrial sequences. The phylogenetic hypotheses for both genes strongly supported monophyly of Trichuris, and distinct genetic lineages corresponding to described species or nematodes associated with certain hosts were recognized based on cox1 sequences. Phylogenetic reconstructions based on concatenated sequences of the two loci, cox1 (mitochondrial DNA (mtDNA)) and 18S rDNA, were congruent with the overall topology inferred from 18S and previously published results based on internal transcribed spacer sequences. Our results demonstrate that the 18S rDNA and cox1 mtDNA genes provide resolution at different levels, but together resolve relationships among geographic populations and species in the genus Trichuris.

  5. Nematode taxonomy: from morphology to metabarcoding

    Science.gov (United States)

    Ahmed, M.; Sapp, M.; Prior, T.; Karssen, G.; Back, M.

    2015-11-01

    Nematodes represent a species rich and morphologically diverse group of metazoans inhabiting both aquatic and terrestrial environments. Their role as biological indicators and as key players in nutrient cycling has been well documented. Some groups of nematodes are also known to cause significant losses to crop production. In spite of this, knowledge of their diversity is still limited due to the difficulty in achieving species identification using morphological characters. Molecular methodology has provided very useful means of circumventing the numerous limitations associated with classical morphology based identification. We discuss herein the history and the progress made within the field of nematode systematics, the limitations of classical taxonomy and how the advent of high throughput sequencing is facilitating advanced ecological and molecular studies.

  6. Molecular characteristics and efficacy of 16D10 siRNAs in inhibiting root-knot nematode infection in transgenic grape hairy roots

    Science.gov (United States)

    Root-knot nematodes (RKNs) infect many annual and perennial crops and are the most devastating soil-born pests in vineyards. To develop a biotech-based solution for controlling RKNs in grapes, we evaluated the efficacy of plant-derived RNA interference (RNAi) silencing of a conserved RKN effector ge...

  7. The Nematode Caenorhabditis Elegans.

    Science.gov (United States)

    Kenyon, Cynthia

    1988-01-01

    Discusses advantages of nematode use for studying patterns of cell division, differentiation, and morphogenesis. Describes nematode development. Cites experimental approaches available for genetic studies. Reviews the topics of control of cell division and differentiation, the nervous system, and muscle assembly and function of the organism. (RT)

  8. [Allelic state of the molecular marker for the golden nematode (Globodera rostochiensis) resistance gene H1 among Ukrainian and world cultivars of potato (Solanum tuberosum ssp. tuberosum)].

    Science.gov (United States)

    Karelov, A V; Pilipenko, L A; Kozub, N A; Bondus, R A; Borzykh, A U; Sozinov, I A; Blium, Ia B; Sozinov, A A

    2013-01-01

    The purpose of our investigation was determination of allelic state of the H1 resistance gene against the pathotypes Ro1 and Ro4 of golden potato cyst nematode (Globodera rostochiensis) among Ukrainian and world potato (Solanum tuberosum ssp. tuberosum) cultivars. The allelic condition of the TG689 marker was determined by PCR with DNA samples isolated from tubers of potato and primers, one pair of which flanks the allele-specific region and the other one was used for the control of DNA quality. Among analyzed 77 potato cultivars the allele of marker associated with the H1-type resistance was found in 74% of Ukrainian and 90% foreign ones although some of those cultivars proved to be susceptible to the golden potato nematode in field. The obtained data confirm the presence of H1-resistance against golden nematode pathotypes Ro1 and Ro4 among the Ukrainian potato cultivars and efficiency of the used marker within the accuracy that has been declared by its authors.

  9. Antarctic teleost immunoglobulins: more extreme, more interesting.

    Science.gov (United States)

    Coscia, Maria Rosaria; Varriale, Sonia; Giacomelli, Stefano; Oreste, Umberto

    2011-11-01

    We have investigated the immunoglobulin molecule and the genes encoding it in teleosts living in the Antarctic seas at the constant temperature of -1.86 °C. The majority of Antarctic teleosts belong to the suborder Notothenioidei (Perciformes), which includes only a few non-Antarctic species. Twenty-one Antarctic and two non-Antarctic Notothenioid species were included in our studies. We sequenced immunoglobulin light chains in two species and μ heavy chains, partially or totally, in twenty species. In the case of heavy chain, genomic DNA and the cDNA encoding the secreted and the membrane form were analyzed. From one species, Trematomus bernacchii, a spleen cDNA library was constructed to evaluate the diversity of VH gene segments. T. bernacchii IgM, purified from the serum and bile, was characterized. Homology Modelling and Molecular Dynamics were used to determine the molecular structure of T. bernacchii and Chionodraco hamatus immunoglobulin domains. This paper sums up the previous results and broadens them with the addition of unpublished data.

  10. Advance of entomopathogenic nematodes

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    This paper summarized the history and present condition of studying and utilizing entomopathogenic nematodes at home and abroad, expounded its taxonomy, life cycle and the mechanism with symbiotic bacteria killing host insect. Taxonomy, mycelial form, pathogenic function and anti-bacteria function of symbiotic bacteria were introduced. Production and utilization of entomopathogenic nematodes, the characteristic genetic improvement by use of biological engineering technology, as well as the existing problem and applying foreground were also discussed.

  11. Ecological Biogeography of the Terrestrial Nematodes of Victoria Land, Antarctica

    Directory of Open Access Journals (Sweden)

    Byron Adams

    2014-06-01

    Full Text Available The terrestrial ecosystems of Victoria Land, Antarctica are characteristically simple in terms of biological diversity and ecological functioning. Nematodes are the most commonly encountered and abundant metazoans of Victoria Land soils, yet little is known of their diversity and distribution. Herein we present a summary of the geographic distribution, habitats and ecology of the terrestrial nematodes of Victoria Land from published and unpublished sources. All Victoria Land nematodes are endemic to Antarctica, and many are common and widely distributed at landscape scales. However, at smaller spatial scales, populations can have patchy distributions, with the presence or absence of each species strongly influenced by specific habitat requirements. As the frequency of nematode introductions to Antarctica increases, and soil habitats are altered in response to climate change, our current understanding of the environmental parameters associated with the biogeography of Antarctic nematofauna will be crucial to monitoring and possibly mitigating changes to these unique soil ecosystems.

  12. 基于SCAR标记的小麦禾谷孢囊线虫快速分子检测技术%Rapid Molecular Diagnosis Based on SCAR Marker System for Cereal Cyst Nematode

    Institute of Scientific and Technical Information of China (English)

    亓晓莉; 彭德良; 彭焕; 龙海波; 黄文坤; 贺文婷

    2012-01-01

    [Objective] The objective of this study is to build a SCAR marker system for rapid molecular detection of cereal cyst nematode (Heterodera avenae) from mixtures of different nematodes. [Method] With the method of RAPD and SCAR, a single-step PCR was used to specially detect H. avenae. [Result] Using the SCAR marker system established in this study, the target fragment was amplified from the DNA templates of H. avenae only, from other 8 species including 32 populations. The SCAR marker system could detect cysts and the J2 of H, avenae, and the specific fragment could be clearly identified when the dilution was 1/2000 of a cyst or 1/80 of a J2 for all replicates. [Conclusion] The establishment of the SCAR marker system for rapid molecular detection of H. avenae can be used to detect the H. avenae from the mixed nematode samples rapidly, and the detection is accurate and highly sensitive.%[目的]建立从禾谷孢囊线虫及其近缘种的混合群体中检测禾谷孢囊线虫的快速分子检测方法.[方法]使用随机扩增多态性DNA(RAPD)和特征序列扩增区域(SCAR)标记的方法,运用PCR技术进行特异性检测.[结果]用本研究建立的SCAR标记快速分子检测体系对9种32个线虫种群进行检测,能够直接从混合线虫样品中检测出禾谷孢囊线虫.该检测方法对禾谷孢囊线虫的孢囊、2龄幼虫具有扩增能力,最低检出阈值为1/2000个孢囊,1/80头2龄幼虫.[结论]本研究设计的SCAR标记快速分子检测体系能够从禾谷孢囊线虫及其近缘种的混合种群中快速检测出禾谷孢囊线虫,且检测准确、灵敏度高.

  13. Roles of Steroids in Nematodes

    Science.gov (United States)

    The inability of nematodes to biosynthesize steroids de novo and the resulting dependence of parasitic nematodes upon their hosts have enhanced the importance of elucidating the metabolism of sterols and the hormonal and other functions of steroids in nematodes. Biochemical research has revealed th...

  14. Conserved nematode signalling molecules elicit plant defenses and pathogen resistance.

    Science.gov (United States)

    Manosalva, Patricia; Manohar, Murli; von Reuss, Stephan H; Chen, Shiyan; Koch, Aline; Kaplan, Fatma; Choe, Andrea; Micikas, Robert J; Wang, Xiaohong; Kogel, Karl-Heinz; Sternberg, Paul W; Williamson, Valerie M; Schroeder, Frank C; Klessig, Daniel F

    2015-07-23

    Plant-defense responses are triggered by perception of conserved microbe-associated molecular patterns (MAMPs), for example, flagellin or peptidoglycan. However, it remained unknown whether plants can detect conserved molecular patterns derived from plant-parasitic animals, including nematodes. Here we show that several genera of plant-parasitic nematodes produce small molecules called ascarosides, an evolutionarily conserved family of nematode pheromones. Picomolar to micromolar concentrations of ascr#18, the major ascaroside in plant-parasitic nematodes, induce hallmark defense responses including the expression of genes associated with MAMP-triggered immunity, activation of mitogen-activated protein kinases, as well as salicylic acid- and jasmonic acid-mediated defense signalling pathways. Ascr#18 perception increases resistance in Arabidopsis, tomato, potato and barley to viral, bacterial, oomycete, fungal and nematode infections. These results indicate that plants recognize ascarosides as a conserved molecular signature of nematodes. Using small-molecule signals such as ascarosides to activate plant immune responses has potential utility to improve economic and environmental sustainability of agriculture.

  15. Nematode cholinergic pharmacology

    Energy Technology Data Exchange (ETDEWEB)

    Segerberg, M.A.

    1989-01-01

    Nematode acetylcholine (ACh) receptors were characterized using both biochemical and electrophysiological techniques, including: (1) receptor binding studies in crude homogenates of the free-living nematode Caenorhabditis elegans and the parasitic nematode Ascaris lumbricoides with the high-affinity probe ({sup 3}H)N-methylscopolamine (({sup 3}H)NMS) which binds to muscarinic receptors in many vertebrate and invertebrate tissues (2) measurement of depolarization and contraction induced by a variety of cholinergic agents, including N-methylscopolamine (NMS), in an innervated dorsal muscle strip preparation of Ascaris; (3) examination of the antagonistic actions of d-tubocurarine (dTC) and NMS at dorsal neuromuscular junction; (4) measurement of input resistance changes in Ascaris commissural motorneurons induced by ACh, dTC, NMS, pilocarpine and other cholinergic drugs.

  16. Molecular identification and functional characterization of the fatty acid- and retinoid-binding protein gene Rs-far-1 in the burrowing nematode Radopholus similis (Tylenchida: Pratylenchidae.

    Directory of Open Access Journals (Sweden)

    Chao Zhang

    Full Text Available Fatty acid- and retinoid-binding protein (FAR is a nematode-specific protein expressed in the nematode hypodermis. It is involved in nematode development, reproduction, and infection and can disrupt the plant defense reaction. In this study, we obtained the full-length sequence of the far gene from Radopholus similis (Rs-far-1, which is 828 bp long and includes a 558 bp ORF encoding 186 amino acids. A protein homology analysis revealed that Rs-FAR-1 is 75% similar to Mj-FAR-1 from Meloidogyne javanica. A neighbor-joining phylogenetic tree was inferred and showed that Rs-FAR-1 is most similar to Pv-FAR-1 from Pratylenchus vulnus. A fluorescence-based ligand-binding analysis confirmed that Rs-FAR-1 can combine with fatty acids and retinol. qPCR was used to assess Rs-far-1 expression levels at different developmental stages in different R. similis populations, and its expression was 2.5 times greater in the highly pathogenic Rs-C population than in the less pathogenic Rs-P population. The highest expression was found in females, followed by eggs, juveniles and males. When R. similis was treated with Rs-far-1 dsRNA for 36 h, the reproduction and pathogenicity decreased significantly. In situ hybridization revealed Rs-far-1 transcripts in the R. similis hypodermis. Additionally, R. similis treated with Rs-far-1 dsRNA or water were inoculated into Arabidopsis thaliana. Allene oxide synthase (AOS expression in A. thaliana was upregulated during early infection in both treatments and then returned to the expression levels of the control plant. Compared with the control plant, AOS expression significantly decreased in A. thaliana inoculated with water-treated R. similis but significantly increased in A. thaliana inoculated with Rs-far-1 dsRNA-treated R. similis. This finding indicates that Rs-far-1 regulates AOS expression in A. thaliana. Rs-FAR-1 plays a critical role in R. similis development, reproduction, and infection and can disturb the plant

  17. Pack hunting by a common soil amoeba on nematodes.

    Science.gov (United States)

    Geisen, Stefan; Rosengarten, Jamila; Koller, Robert; Mulder, Christian; Urich, Tim; Bonkowski, Michael

    2015-11-01

    Soils host the most complex communities on Earth, including the most diverse and abundant eukaryotes, i.e. heterotrophic protists. Protists are generally considered as bacterivores, but evidence for negative interactions with nematodes both from laboratory and field studies exist. However, direct impacts of protists on nematodes remain unknown. We isolated the soil-borne testate amoeba Cryptodifflugia operculata and found a highly specialized and effective pack-hunting strategy to prey on bacterivorous nematodes. Enhanced reproduction in presence of prey nematodes suggests a beneficial predatory life history of these omnivorous soil amoebae. Cryptodifflugia operculata appears to selectively impact the nematode community composition as reductions of nematode numbers were species specific. Furthermore, we investigated 12 soil metatranscriptomes from five distinct locations throughout Europe for 18S ribosomal RNA transcripts of C. operculata. The presence of C. operculata transcripts in all samples, representing up to 4% of the active protist community, indicates a potential ecological importance of nematophagy performed by C. operculata in soil food webs. The unique pack-hunting strategy on nematodes that was previously unknown from protists, together with molecular evidence that these pack hunters are likely to be abundant and widespread in soils, imply a considerable importance of the hitherto neglected trophic link 'nematophagous protists' in soil food webs.

  18. Towards the molecular characterisation of parasitic nematode assemblages: an evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis.

    Science.gov (United States)

    Lott, M J; Hose, G C; Power, M L

    2014-09-01

    Identifying factors which regulate temporal and regional structuring within parasite assemblages requires the development of non-invasive techniques which facilitate both the rapid discrimination of individual parasites and the capacity to monitor entire parasite communities across time and space. To this end, we have developed and evaluated a rapid fluorescence-based method, terminal restriction fragment length polymorphism (T-RFLP) analysis, for the characterisation of parasitic nematode assemblages in macropodid marsupials. The accuracy with which T-RFLP was capable of distinguishing between the constituent taxa of a parasite community was assessed by comparing sequence data from two loci (the ITS+ region of nuclear ribosomal DNA and the mitochondrial CO1) across ∼20 species of nematodes (suborder Strongylida). Our results demonstrate that with fluorescent labelling of the forward and reverse terminal restriction fragments (T-RFs) of the ITS+ region, the restriction enzyme Hinf1 was capable of generating species specific T-RFLP profiles. A notable exception was within the genus Cloacina, in which closely related species often shared identical T-RFs. This may be a consequence of the group's comparatively recent evolutionary radiation. While the CO1 displayed higher sequence diversity than the ITS+, the subsequent T-RFLP profiles were taxonomically inconsistent and could not be used to further differentiate species within Cloacina. Additionally, several of the ITS+ derived T-RFLP profiles exhibited unexpected secondary peaks, possibly as a consequence of the restriction enzymes inability to cleave partially single stranded amplicons. These data suggest that the question of T-RFLPs utility in monitoring parasite communities cannot be addressed without considering the ecology and unique evolutionary history of the constituent taxa.

  19. Transcriptome Analysis of Resistant and Susceptible Alfalfa Cultivars Infected With Root-Knot Nematode Meloidogyne incognita

    OpenAIRE

    Postnikova, Olga A.; Maria Hult; Jonathan Shao; Andrea Skantar; Nemchinov, Lev G.

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute...

  20. Biodiversity and adaptive evolution of Antarctic notothenioid fishes

    Directory of Open Access Journals (Sweden)

    Qianghua Xu

    2014-01-01

    Full Text Available The sea surrounding the Antarctic continent is one of the coldest regions in the world. It provides an environmentally unique and isolated “hotbed” for evolution to take place. In the past 30 million years, species of Perciform suborder Notothenioidei evolved and diversified from a benthic and temperate-water ancestor, and now dominate the fish fauna of the coldest ocean. Because of their distribution across temperature zones both inside and outside the Antarctic Polar Front, notothenioid fishes are regarded as excellent model organisms for exploring mechanisms of adaptive evolution, particularly cold adaptation. We first summarize research progress on the biodiversity of Antarctic fish and then review current findings on the peculiar biological characteristics of Antarctic notothenioids that evolved in response to a freezing environment. Research has revealed that extensive gene duplication and transcriptomic changes occurred during the adaptive radiation of notothenioid fish. Examples of highly duplicated genes in the Antarctic lineages include genes encoding hepcidin, and zona pellucida proteins, in addition to various retrotransposable elements. A few genes from Antarctic notothenioid fishes have been used as transgenes and demonstrated to be effective in making transgenic plants cold-hardy. In the coming years, the genomes of some Antarctic notothenioid species will be fully sequenced and the adaptive functions of duplicated genes will be further elucidated. Such studies will deepen our understanding of how genomes evolve in freezing environments, and provide an improved knowledge of molecular mechanisms of cold adaptation.

  1. Integrated signaling networks in plant responses to sedentary endoparasitic nematodes: a perspective.

    Science.gov (United States)

    Li, Ruijuan; Rashotte, Aaron M; Singh, Narendra K; Weaver, David B; Lawrence, Kathy S; Locy, Robert D

    2015-01-01

    Sedentary plant endoparasitic nematodes can cause detrimental yield losses in crop plants making the study of detailed cellular, molecular, and whole plant responses to them a subject of importance. In response to invading nematodes and nematode-secreted effectors, plant susceptibility/resistance is mainly determined by the coordination of different signaling pathways including specific plant resistance genes or proteins, plant hormone synthesis and signaling pathways, as well as reactive oxygen signals that are generated in response to nematode attack. Crosstalk between various nematode resistance-related elements can be seen as an integrated signaling network regulated by transcription factors and small RNAs at the transcriptional, posttranscriptional, and/or translational levels. Ultimately, the outcome of this highly controlled signaling network determines the host plant susceptibility/resistance to nematodes.

  2. Intestinal nematodes: biology and control.

    Science.gov (United States)

    Epe, Christian

    2009-11-01

    A variety of nematodes occur in dogs and cats. Several nematode species inhabit the small and large intestines. Important species that live in the small intestine are roundworms of the genus Toxocara (T canis, T cati) and Toxascaris (ie, T leonina), and hookworms of the genus Ancylostoma (A caninum, A braziliense, A tubaeforme) or Uncinaria (U stenocephala). Parasites of the large intestine are nematodes of the genus Trichuris (ie, whipworms, T vulpis). After a comprehensive description of their life cycle and biology, which are indispensable for understanding and justifying their control, current recommendations for nematode control are presented and discussed thereafter.

  3. Transcriptomics and comparative analysis of three antarctic notothenioid fishes.

    Directory of Open Access Journals (Sweden)

    Seung Chul Shin

    Full Text Available For the past 10 to 13 million years, Antarctic notothenioid fish have undergone extraordinary periods of evolution and have adapted to a cold and highly oxygenated Antarctic marine environment. While these species are considered an attractive model with which to study physiology and evolutionary adaptation, they are poorly characterized at the molecular level, and sequence information is lacking. The transcriptomes of the Antarctic fishes Notothenia coriiceps, Chaenocephalus aceratus, and Pleuragramma antarcticum were obtained by 454 FLX Titanium sequencing of a normalized cDNA library. More than 1,900,000 reads were assembled in a total of 71,539 contigs. Overall, 40% of the contigs were annotated based on similarity to known protein or nucleotide sequences, and more than 50% of the predicted transcripts were validated as full-length or putative full-length cDNAs. These three Antarctic fishes shared 663 genes expressed in the brain and 1,557 genes expressed in the liver. In addition, these cold-adapted fish expressed more Ub-conjugated proteins compared to temperate fish; Ub-conjugated proteins are involved in maintaining proteins in their native state in the cold and thermally stable Antarctic environments. Our transcriptome analysis of Antarctic notothenioid fish provides an archive for future studies in molecular mechanisms of fundamental genetic questions, and can be used in evolution studies comparing other fish.

  4. New data on two remarkable Antarctic species Amblydorylaimusisokaryon (Loof, 1975) Andrássy, 1998 and Pararhyssocolpusparadoxus (Loof, 1975), gen. n., comb. n. (Nematoda, Dorylaimida).

    Science.gov (United States)

    Elshishka, Milka; Lazarova, Stela; Radoslavov, Georgi; Hristov, Petar; Peneva, Vlada K

    2015-01-01

    The taxonomic position of two antarctic dorylaimid species Amblydorylaimusisokaryon (Loof, 1975) Andrássy, 1998 and Pararhyssocolpusparadoxus (Loof, 1975), gen. n., comb. n. are discussed on the basis of morphological, including SEM study, morphometric, postembryonic and sequence data of 18S rDNA and the D2-D3 expansion fragments of large subunit rDNA. The evolutionary trees inferred from 18S sequences show insufficient resolution to determine the assignment of the two species to particular families, moreover Pararhyssocolpusparadoxus gen. n., comb. n. (=Rhyssocolpusparadoxus) previously regarded as a member of Nordiidae or Qudsianematidae, showed distant relationship both to Rhyssocolpusvinciguerrae and Eudorylaimus spp. The phylogram inferred from 28S sequences revealed that Amblydorylaimusisokaryon is a member of a well-supported group comprised of several Aporcelaimellus spp., while, no close relationships could be revealed for the Pararhyssocolpusparadoxus gen. n., comb. n. to any nematode genus. On the basis of molecular data and morphological characteristics, some taxonomic changes are proposed. Amblydorylaimusisokaryon is transferred from family Qudsianematidae to family Aporcelaimidae, and a new monotypic genus Pararhyssocolpus gen. n. is proposed, attributed to Pararhyssocolpidaefam. n. The diagnosis of the new family is provided together with emended diagnosis of the genera Amblydorylaimus and Pararhyssocolpus gen. n. Data concerning distribution of these endemic genera in the Antarctic region are also given.

  5. Bacteria can mobilize nematode-trapping fungi to kill nematodes.

    Science.gov (United States)

    Wang, Xin; Li, Guo-Hong; Zou, Cheng-Gang; Ji, Xing-Lai; Liu, Tong; Zhao, Pei-Ji; Liang, Lian-Ming; Xu, Jian-Ping; An, Zhi-Qiang; Zheng, Xi; Qin, Yue-Ke; Tian, Meng-Qing; Xu, You-Yao; Ma, Yi-Cheng; Yu, Ze-Fen; Huang, Xiao-Wei; Liu, Shu-Qun; Niu, Xue-Mei; Yang, Jin-Kui; Huang, Ying; Zhang, Ke-Qin

    2014-12-16

    In their natural habitat, bacteria are consumed by bacterivorous nematodes; however, they are not simply passive preys. Here we report a defensive mechanism used by certain bacteria to mobilize nematode-trapping fungi to kill nematodes. These bacteria release urea, which triggers a lifestyle switch in the fungus Arthrobotrys oligospora from saprophytic to nematode-predatory form; this predacious form is characterized by formation of specialized cellular structures or 'traps'. The bacteria significantly promote the elimination of nematodes by A. oligospora. Disruption of genes involved in urea transport and metabolism in A. oligospora abolishes the urea-induced trap formation. Furthermore, the urea metabolite ammonia functions as a signal molecule in the fungus to initiate the lifestyle switch to form trap structures. Our findings highlight the importance of multiple predator-prey interactions in prey defense mechanisms.

  6. Molecular cloning and functional identification of resistant candidate gene Rhg1 to soybean cyst nematode%大豆胞囊线虫抗性候选基因Rhg1的克隆及其功能验证

    Institute of Scientific and Technical Information of China (English)

    高慕娟; 宋雯雯; 韩雪; 王继安

    2012-01-01

    Soybean cyst nematode (SCN) is a serious and destructive pest in soybean production worldwide and causes great loss on its yield and quality. It has been an economical and effective method to breed resistant soybean cultivars for decreasing or avoiding its damage. Clone the Rhg1 gene through the RT-PCR method and constructed the overexpression vector pCAMBIA3301/Rhg1 that was transformed into soybean Dongnong50 via Agrobacterium-mediated transformation of cotyledonary node. Glufosinate-resistant plants were detected to be positive by PCR. Furthermore, the Rhg1 gene in transgenic plants were identified to be a high expression level through Real-time quantify PCR. The SOD content of transgenic plant was significantly higher than that of wild types, while the MDA content of transgenic plant was lower than that of wild types. The results confirmed that the Rhg1 gene was crucial resistant gene and provided the basis on molecular resistant breeding of soybean cyst nematode.%大豆胞囊线虫(Soybean cyst nematode,SCN)是大豆生产上一种危害严重的世界性害虫,给大豆的产量和品质造成极大的损失.大豆抗性品种选育是其防治措施中最经济、有效的方法.文章拟利用RT-PCR方法克隆得到大豆胞囊线虫抗性候选基因Rhg1,通过构建植物过量表达栽体pCAMBIA3301/Rhg1,并采用根癌农杆菌介导的大豆子叶节方法转化大豆东农50.PCR检测草丁膦抗性植株,表明目的基因已经整合到了大豆基因组中;实时荧光定量PCR结果也进一步证实,目的基因在转基因植株中有较高水平的表达丰度.在胞囊线虫的侵蚀下,转基因植株体内的超氧化物歧化酶含量显著高于野生型植株,而丙二醛含量低于野生型植株.研究证实了Rhg1为大豆胞囊线虫的主抗基因,同时为大豆胞囊线虫的分子抗性育种提供理论基础.

  7. Social networks of educated nematodes

    Science.gov (United States)

    Entomopathogenic nematodes are obligate lethal parasitoids of insect larvae that navigate a chemically complex belowground environment while interacting with their insect hosts, plants, and each other. In this environment, prior exposure to volatile compounds appears to prime nematodes in a compound...

  8. Modelling the Antarctic Ice Sheet

    DEFF Research Database (Denmark)

    Pedersen, Jens Olaf Pepke; Holm, A.

    2015-01-01

    The Antarctic ice sheet is a major player in the Earth’s climate system and is by far the largest depository of fresh water on the planet. Ice stored in the Antarctic ice sheet (AIS) contains enough water to raise sea level by about 58 m, and ice loss from Antarctica contributed significantly...... Science) Antarctic Ice Sheet (DAIS) model (Shaffer 2014) is forced by reconstructed time series of Antarctic temperature, global sea level and ocean subsurface temperature over the last two glacial cycles. In this talk a modelling work of the Antarctic ice sheet over most of the Cenozoic era using...... the DAIS model will be presented. G. Shaffer (2014) Formulation, calibration and validation of the DAIS model (version 1), a simple Antarctic ice sheet model sensitive to variations of sea level and ocean subsurface temperature, Geosci. Model Dev., 7, 1803‐1818...

  9. Antarctic science preserve polluted

    Science.gov (United States)

    Simarski, Lynn Teo

    Geophysicists are alarmed at the electromagnetic pollution of a research site in the Antarctic specifically set aside to study the ionosphere and magnetosphere. A private New Zealand communications company called Telecom recently constructed a satellite ground station within the boundaries of this Site of Special Scientific Interest (SSSI), protected since the mid-1970s. The placement of a commercial facility within this site sets an ominous precedent not only for the sanctity of other SSSIs, but also for Specially Protected Areas—preserves not even open to scientific research, such as certain penguin rookeries.The roughly rectangular, one-by-one-half mile site, located at Arrival Heights not far from McMurdo Station, is one of a number of areas protected under the Antarctic treaty for designated scientific activities. Many sites are set aside for geological or biological research, but this is the only one specifically for physical science.

  10. Viruses in Antarctic lakes

    Science.gov (United States)

    Kepner, R. L. Jr; Wharton, R. A. Jr; Suttle, C. A.; Wharton RA, J. r. (Principal Investigator)

    1998-01-01

    Water samples collected from four perennially ice-covered Antarctic lakes during the austral summer of 1996-1997 contained high densities of extracellular viruses. Many of these viruses were found to be morphologically similar to double-stranded DNA viruses that are known to infect algae and protozoa. These constitute the first observations of viruses in perennially ice-covered polar lakes. The abundance of planktonic viruses and data suggesting substantial production potential (relative to bacteria] secondary and photosynthetic primary production) indicate that viral lysis may be a major factor in the regulation of microbial populations in these extreme environments. Furthermore, we suggest that Antarctic lakes may be a reservoir of previously undescribed viruses that possess novel biological and biochemical characteristics.

  11. Pan-phylum Comparison of Nematode Metabolic Potential.

    Directory of Open Access Journals (Sweden)

    Rahul Tyagi

    2015-05-01

    Full Text Available Nematodes are among the most important causative pathogens of neglected tropical diseases. The increased availability of genomic and transcriptomic data for many understudied nematode species provides a great opportunity to investigate different aspects of their biology. Increasingly, metabolic potential of pathogens is recognized as a critical determinant governing their development, growth and pathogenicity. Comparing metabolic potential among species with distinct trophic ecologies can provide insights on overall biology or molecular adaptations. Furthermore, ascertaining gene expression at pathway level can help in understanding metabolic dynamics over development. Comparison of biochemical pathways (or subpathways, i.e. pathway modules among related species can also retrospectively indicate potential mistakes in gene-calling and functional annotation. We show with numerous illustrative case studies that comparisons at the level of pathway modules have the potential to uncover biological insights while remaining computationally tractable. Here, we reconstruct and compare metabolic modules found in the deduced proteomes of 13 nematodes and 10 non-nematode species (including hosts of the parasitic nematode species. We observed that the metabolic potential is, in general, concomitant with phylogenetic and/or ecological similarity. Varied metabolic strategies are required among the nematodes, with only 8 out of 51 pathway modules being completely conserved. Enzyme comparison based on topology of metabolic modules uncovered diversification between parasite and host that can potentially guide therapeutic intervention. Gene expression data from 4 nematode species were used to study metabolic dynamics over their life cycles. We report unexpected differential metabolism between immature and mature microfilariae of the human filarial parasite Brugia malayi. A set of genes potentially important for parasitism is also reported, based on an analysis of

  12. Pan-phylum Comparison of Nematode Metabolic Potential.

    Science.gov (United States)

    Tyagi, Rahul; Rosa, Bruce A; Lewis, Warren G; Mitreva, Makedonka

    2015-05-01

    Nematodes are among the most important causative pathogens of neglected tropical diseases. The increased availability of genomic and transcriptomic data for many understudied nematode species provides a great opportunity to investigate different aspects of their biology. Increasingly, metabolic potential of pathogens is recognized as a critical determinant governing their development, growth and pathogenicity. Comparing metabolic potential among species with distinct trophic ecologies can provide insights on overall biology or molecular adaptations. Furthermore, ascertaining gene expression at pathway level can help in understanding metabolic dynamics over development. Comparison of biochemical pathways (or subpathways, i.e. pathway modules) among related species can also retrospectively indicate potential mistakes in gene-calling and functional annotation. We show with numerous illustrative case studies that comparisons at the level of pathway modules have the potential to uncover biological insights while remaining computationally tractable. Here, we reconstruct and compare metabolic modules found in the deduced proteomes of 13 nematodes and 10 non-nematode species (including hosts of the parasitic nematode species). We observed that the metabolic potential is, in general, concomitant with phylogenetic and/or ecological similarity. Varied metabolic strategies are required among the nematodes, with only 8 out of 51 pathway modules being completely conserved. Enzyme comparison based on topology of metabolic modules uncovered diversification between parasite and host that can potentially guide therapeutic intervention. Gene expression data from 4 nematode species were used to study metabolic dynamics over their life cycles. We report unexpected differential metabolism between immature and mature microfilariae of the human filarial parasite Brugia malayi. A set of genes potentially important for parasitism is also reported, based on an analysis of gene expression in

  13. Molecular identification, morphological characterization and new insights into the ecology of larval Pseudoterranova cattani in fishes from the Argentine coast with its differentiation from the Antarctic species, P. decipiens sp. E (Nematoda: Anisakidae).

    Science.gov (United States)

    Timi, Juan T; Paoletti, Michela; Cimmaruta, Roberta; Lanfranchi, Ana L; Alarcos, Ana J; Garbin, Lucas; George-Nascimento, Mario; Rodríguez, Diego H; Giardino, Gisela V; Mattiucci, Simonetta

    2014-01-17

    Larvae of the genus Pseudoterranova constitute a risk for human health when ingested through raw or undercooked fish. They can provoke pseudoterranovosis in humans, a fish-borne zoonotic disease whose pathogenicity varies with the species involved, making their correct specific identification a necessary step in the knowledge of this zoonosis. Larvae of Pseudoterranova decipiens s.l. have been reported in several fish species from off the Argentine coasts; however, there are no studies dealing with their specific identification in this region. Here, a genetic identification and morphological characterization of larval Pseudoterranova spp. from three fish species sampled from Argentine waters and from Notothenia coriiceps from Antarctic waters was carried out. Larvae were sequenced for their genetic/molecular identification, including the mitochondrial cytochrome c oxidase subunit II (mtDNA cox2), the first (ITS-1) and the second (ITS-2) internal transcribed spacers of the nuclear ribosomal DNA, and compared with all species of the P. decipiens (sensu lato) species complex (sequences available in GenBank). Further, adults of Pseudoterranova spp. from the definitive host, the southern sea lion, Otaria flavescens, from Argentine and Chilean coasts were sequenced at the same genes. The sequences obtained at the ITS-1 and ITS-2 genes from all the larvae examined from fish of Argentine waters, as well as the adult worms, matched 100% the sequences for the species P. cattani. The sequences obtained at mtDNA cox2 gene for Antarctic larvae matched 99% those available in GenBank for the sibling P. decipiens sp. E. Both MP and BI phylogenetic trees strongly supported P. cattani and P. decipiens sp. E as two distinct phylogenetic lineages and depicted the species P. decipiens sp. E as sister taxon to the remaining taxa of the P. decipiens complex. Larval morphometry was similar between specimens of P. cattani from Argentina, but significantly different from those of P

  14. Unravelling the Biodiversity and Molecular Phylogeny of Needle Nematodes of the Genus Longidorus (Nematoda: Longidoridae) in Olive and a Description of Six New Species

    Science.gov (United States)

    Archidona-Yuste, Antonio; Navas-Cortés, Juan A.; Cantalapiedra-Navarrete, Carolina; Palomares-Rius, Juan E.; Castillo, Pablo

    2016-01-01

    The genus Longidorus includes a remarkable group of invertebrate animals of the phylum Nematoda comprising polyphagous root-ectoparasites of numerous plants including several agricultural crops and trees. Damage is caused by direct feeding on root cells as well as by transmitting nepoviruses that cause disease on those crops. Thus, correct identification of Longidorus species is essential to establish appropriate control measures. We provide the first detailed information on the diversity and distribution of Longidorus species infesting wild and cultivated olive soils in a wide-region in southern Spain that included 159 locations from which 449 sampling sites were analyzed. The present study doubles the known biodiversity of Longidorus species identified in olives by including six new species (Longidorus indalus sp. nov., Longidorus macrodorus sp. nov., Longidorus onubensis sp. nov., Longidorus silvestris sp. nov., Longidorus vallensis sp. nov., and Longidorus wicuolea sp. nov.), two new records for wild and cultivate olives (L. alvegus and L. vineacola), and two additional new records for wild olive (L. intermedius and L. lusitanicus). We also found evidence of some geographic species associations to western (viz. L. alvegus, L. intermedius, L. lusitanicus, L. onubensis sp. nov., L. vineacola, L. vinearum, L. wicuolea sp. nov.) and eastern distributions (viz. L. indalus sp. nov.), while only L. magnus was detected in both areas. We developed a comparative study by considering morphological and morphometrical features together with molecular data from nuclear ribosomal RNA genes (D2–D3 expansion segments of 28S, ITS1, and partial 18S). Results of molecular and phylogenetic analyses confirmed the morphological hypotheses and allowed the delimitation and discrimination of six new species of the genus described herein and four known species. Phylogenetic analyses of Longidorus spp. based on three molecular markers resulted in a general consensus of these species

  15. Unravelling the Biodiversity and Molecular Phylogeny of Needle Nematodes of the Genus Longidorus (Nematoda: Longidoridae) in Olive and a Description of Six New Species.

    Science.gov (United States)

    Archidona-Yuste, Antonio; Navas-Cortés, Juan A; Cantalapiedra-Navarrete, Carolina; Palomares-Rius, Juan E; Castillo, Pablo

    2016-01-01

    The genus Longidorus includes a remarkable group of invertebrate animals of the phylum Nematoda comprising polyphagous root-ectoparasites of numerous plants including several agricultural crops and trees. Damage is caused by direct feeding on root cells as well as by transmitting nepoviruses that cause disease on those crops. Thus, correct identification of Longidorus species is essential to establish appropriate control measures. We provide the first detailed information on the diversity and distribution of Longidorus species infesting wild and cultivated olive soils in a wide-region in southern Spain that included 159 locations from which 449 sampling sites were analyzed. The present study doubles the known biodiversity of Longidorus species identified in olives by including six new species (Longidorus indalus sp. nov., Longidorus macrodorus sp. nov., Longidorus onubensis sp. nov., Longidorus silvestris sp. nov., Longidorus vallensis sp. nov., and Longidorus wicuolea sp. nov.), two new records for wild and cultivate olives (L. alvegus and L. vineacola), and two additional new records for wild olive (L. intermedius and L. lusitanicus). We also found evidence of some geographic species associations to western (viz. L. alvegus, L. intermedius, L. lusitanicus, L. onubensis sp. nov., L. vineacola, L. vinearum, L. wicuolea sp. nov.) and eastern distributions (viz. L. indalus sp. nov.), while only L. magnus was detected in both areas. We developed a comparative study by considering morphological and morphometrical features together with molecular data from nuclear ribosomal RNA genes (D2-D3 expansion segments of 28S, ITS1, and partial 18S). Results of molecular and phylogenetic analyses confirmed the morphological hypotheses and allowed the delimitation and discrimination of six new species of the genus described herein and four known species. Phylogenetic analyses of Longidorus spp. based on three molecular markers resulted in a general consensus of these species

  16. Unravelling the Biodiversity and Molecular Phylogeny of Needle Nematodes of the Genus Longidorus (Nematoda: Longidoridae in Olive and a Description of Six New Species.

    Directory of Open Access Journals (Sweden)

    Antonio Archidona-Yuste

    Full Text Available The genus Longidorus includes a remarkable group of invertebrate animals of the phylum Nematoda comprising polyphagous root-ectoparasites of numerous plants including several agricultural crops and trees. Damage is caused by direct feeding on root cells as well as by transmitting nepoviruses that cause disease on those crops. Thus, correct identification of Longidorus species is essential to establish appropriate control measures. We provide the first detailed information on the diversity and distribution of Longidorus species infesting wild and cultivated olive soils in a wide-region in southern Spain that included 159 locations from which 449 sampling sites were analyzed. The present study doubles the known biodiversity of Longidorus species identified in olives by including six new species (Longidorus indalus sp. nov., Longidorus macrodorus sp. nov., Longidorus onubensis sp. nov., Longidorus silvestris sp. nov., Longidorus vallensis sp. nov., and Longidorus wicuolea sp. nov., two new records for wild and cultivate olives (L. alvegus and L. vineacola, and two additional new records for wild olive (L. intermedius and L. lusitanicus. We also found evidence of some geographic species associations to western (viz. L. alvegus, L. intermedius, L. lusitanicus, L. onubensis sp. nov., L. vineacola, L. vinearum, L. wicuolea sp. nov. and eastern distributions (viz. L. indalus sp. nov., while only L. magnus was detected in both areas. We developed a comparative study by considering morphological and morphometrical features together with molecular data from nuclear ribosomal RNA genes (D2-D3 expansion segments of 28S, ITS1, and partial 18S. Results of molecular and phylogenetic analyses confirmed the morphological hypotheses and allowed the delimitation and discrimination of six new species of the genus described herein and four known species. Phylogenetic analyses of Longidorus spp. based on three molecular markers resulted in a general consensus of these

  17. Antarctic, Sub-Antarctic and cold temperate echinoid database

    Directory of Open Access Journals (Sweden)

    Benjamin Pierrat

    2012-06-01

    Full Text Available This database includes spatial data of Antarctic, Sub-Antarctic and cold temperate echinoid distribution (Echinodermata: Echinoidea collected during many oceanographic campaigns led in the Southern Hemisphere from 1872 to 2010. The dataset lists occurrence data of echinoid distribution south of 35°S latitude, together with information on taxonomy (from species to genus level, sampling sources (cruise ID, sampling dates, ship names and sampling sites (geographic coordinates and depth. Echinoid occurrence data were compiled from the Antarctic Echinoid Database (David et al., 2005a, which integrates records from oceanographic cruises led in the Southern Ocean until 2003. This database has been upgraded to take into account data from oceanographic cruises led after 2003. The dataset now reaches a total of 6160 occurrence data that have been checked for systematics reliability and consistency. It constitutes today the most complete database on Antarctic and Sub-Antarctic echinoids.

  18. Morphological and molecular identification of the burrowing nematode Radopholus similis from Anthurium andraeanum%危害红掌的穿孔线虫形态和分子鉴定

    Institute of Scientific and Technical Information of China (English)

    高月荣; 陈昌龙; 杨光穗; 简恒; 牛俊海

    2013-01-01

    对一批引进后隔离培养中患病的红掌种苗,进行了根系线虫检测,通过病症分析、线虫形态测量、rDNA-ITS区序列分析等鉴定,结果表明:检测的线虫形态和香蕉穿孔线虫基本一致,rDNA-ITS区测序结果序列一致性为98%~100%.本报道再次证明香蕉穿孔线虫在红掌上的分布和危害,应该对种苗的跨区引进和种植过程进行严格的检疫.%Diagnosis of root parasitic nematodes was carried out on a group of imported and isolated growing Anthurium andraeanum seedlings with nematode-suspected disease symptoms by symptom diagnosis,morphological measure and rDNA-ITS sequence analysis.The isolated nematode was identified to be burrowing nematode Radopholus similis.The results revealed that the burrowing nematode could exist and damage on A.andraeanum.Take into account its wide host range and gigantic harmfulness,a strict inspection and quarantine should be applied in the importation and cultivation of A.andraeanum.

  19. Social Networks of Educated Nematodes.

    Science.gov (United States)

    Willett, Denis S; Alborn, Hans T; Duncan, Larry W; Stelinski, Lukasz L

    2015-09-25

    Entomopathogenic nematodes are obligate lethal parasitoids of insect larvae that navigate a chemically complex belowground environment while interacting with their insect hosts, plants, and each other. In this environment, prior exposure to volatile compounds appears to prime nematodes in a compound specific manner, increasing preference for volatiles they previously were exposed to and decreasing attraction to other volatiles. In addition, persistence of volatile exposure influences this response. Longer exposure not only increases preference, but also results in longer retention of that preference. These entomopathogenic nematodes display interspecific social behavioral plasticity; experienced nematodes influence the behavior of different species. This interspecific social behavioral plasticity suggests a mechanism for rapid adaptation of belowground communities to dynamic environments.

  20. Research on plant-parasitic nematode biology conducted by the United States Department of Agriculture-Agricultural Research Service.

    Science.gov (United States)

    Chitwood, David J

    2003-01-01

    The recent de-registration of several chemical nematicides and the impending loss of methyl bromide from the pest-control market necessitate the development of new methods for controlling nematode-induced crop damage. One approach for developing novel target-specific controls is by exploiting fundamental differences between the biological processes of nematodes and their host plants. Researchers of the Agricultural Research Service (ARS) of the US Department of Agriculture are actively exploring these differences. Research accomplishments include the discovery of heat shock protein genes possibly involved in developmental arrest of the soybean cyst nematode, the identification of neuropeptides and female-specific proteins in the soybean cyst nematode, the disruption of nematode reproduction with inhibitors of nematode sterol metabolism, the development of novel morphological and molecular (heat shock protein genes and the D3 segment of large subunit ribosomal DNA) features useful for nematode identification and classification, and the elucidation of the population genetics of potato cyst nematode pathotypes. In addition, several ARS researchers are investigating biological determinants of nematode response to management strategies utilized in agricultural fields. These collective efforts should lead to new chemical and non-chemical alternatives to conventional nematode control strategies.

  1. Screening of microorganisms from Antarctic surface water and cytotoxicity metabolites from Antarctic microorganisms.

    Science.gov (United States)

    Zheng, Lanhong; Yang, Kangli; Liu, Jia; Sun, Mi; Zhu, Jiancheng; Lv, Mei; Kang, Daole; Wang, Wei; Xing, Mengxin; Li, Zhao

    2016-03-01

    The Antarctic is a potentially important library of microbial resources and new bioactive substances. In this study, microorganisms were isolated from surface water samples collected from different sites of the Antarctic. 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) assay-based cytotoxicity-tracking method was used to identify Antarctic marine microorganism resources for antitumor lead compounds. The results showed that a total of 129 Antarctic microorganism strains were isolated. Twelve strains showed potent cytotoxic activities, among which a Gram-negative, rod-shaped bacterium, designated as N11-8 was further studied. Phylogenetic analysis based on 16S rRNA gene sequence showed that N11-8 belongs to the genus Bacillus. Fermented active products of N11-8 with molecular weights of 1-30 kDa had higher inhibitory effects on different cancaer cells, such as BEL-7402 human hepatocellular carcinoma cells, U251 human glioma cells, RKO human colon carcinoma cells, A549 human lung carcinoma cells, and MCF-7 human breast carcinoma cells. However, they displayed lower cytotoxicity against HFL1 human normal fibroblast lung cells. However, they displayed lower cytotoxicity against HFL1 human normal fibroblast lung cells. Microscopic observations showed that the fermented active products have inhibitory activity on BEL-7402 cells similar to that of mitomycin C. Further studies indicated that the fermented active products have high pH and high thermal stability. In conclusion, most strains isolated in this study may be developed as promising sources for the discovery of antitumor bioactive substances. The fermented active products of Antarctic marine Bacillus sp. N11- 8 are expected to be applied in the prevention and treatment of cancer.

  2. Using nematodes in soil ecotoxicology.

    Science.gov (United States)

    Sochová, Ivana; Hofman, Jakub; Holoubek, Ivan

    2006-04-01

    Nematodes represent a very abundant group of soil organisms and non-parasitic species are important for soil quality and in the soil food web. In recent years, it has been shown that nematodes are appropriate bioindicators of soil condition and they are also suitable organisms for laboratory toxicity testing. The aims of this paper are to overview and critically assess methods and approaches for researching soil nematode ecotoxicology. In natural ecosystems, nematode abundance and community structure analyses were proved to be sensitive indicators of stress caused by soil pollutants and ecological disturbance. Community structure analyses may be approached from a functional or ecological point of view; species are divided into groups according to their feeding habits or alternatively the maturity index is calculated according to their ecological strategy. Many environmental factors have the potential to affect nematode community, which consequently results in high space and time variability. This variance is major handicap in field ecotoxicological studies because pollutant-nematode relationships are obscured. For prospective risk assessment of chemicals, several toxicity tests with nematodes were developed and are increasingly used. Sensitivity of these tests is comparable to tests with other soil species (e.g. enchytraeids, earthworms and springtails) while tests are less demanding to space and time. Most studies have focused on metal toxicity but organic compounds are almost overlooked. Endpoints used in tests were often mortality, reproduction or movement, but more sublethal endpoints such as feeding or biomarkers have been used recently too. Although there is an increasing amount of knowledge in soil nematode ecotoxicology, there is still a lot of various issues in this topic to research.

  3. High infectivity of an endoparasitic fungus strain, Esteya vermicola, against nematodes.

    Science.gov (United States)

    Wang, Chun Yan; Fang, Zhe Ming; Sun, Bai Shen; Gu, Li Juan; Zhang, Ke Qin; Sung, Chang-Keun

    2008-08-01

    Esteya vermicola, as the first recorded endoparasitic fungus of pinewood nematodes, exhibits great potential as a biological agent against nematodes. However, only two strains of this species have been described so far. In this study, we identified a novel endoparasitic fungal strain, CNU 120806, isolated from infected nematodes in forest soil samples during a survey of nematophagous fungi in Korea. This strain showed similar morphological characteristics and infection mode with the two previously described strains of E. vermicola. All strains are characterized by the ability to produce two types of conidiogenous cells and conidia, and to parasitize nematodes with lunate adhesive conidia. Moreover, the CNU 120806 strain showed 100% identity with E. vermicola CBS 115803 when their partial sequences of 28S rRNA gene were compared. Molecular phylogenetic analysis further identified CNU 120806 as a strain of E. vermicola, by clustering CNU 120806 and E. vermicola CBS 115803 into a single subclade. Culture medium influenced the proportion of dimorphic CNU 120806 conidia, and further changed the adhesive and mortality rates of nematodes. The CNU 120806 strain exhibits high infection activity against nematodes on nutrient-rich PDA medium. Almost all tested nematodes were killed within 8 approximately 10 days after inoculation. This study provides justification for further research of E. vermicola, and the application and formulation of this fungus as a bio-control agent against nematodes.

  4. Shackleton: His Antarctic Writings

    Science.gov (United States)

    Dalrymple, Paul C.

    Two books entitled “Shackleton” were published in the United Kingdom in recent years. The one entitled Shackleton: His Antarctic Writings, Selected and Introduced by Christopher Ralling was published by the British Broadcasting Corporation (BBC) in 1983; the other, by Roland Huntford and simply entitled Shackleton, was published by Hodder and Stoughton (London) in November 1985. The only two things that these books have in common are their title and home publication base: The BBC book is essentially excerpts from two well-known books written by Shackleton, with a strong assist from a New Zealand reporter, Edward Saunders (who served as Shackleton's amanuensis), whereas Huntford's book is an outstanding polar biography.

  5. Biodiversity and biogeography of Antarctic and sub-Antarctic mollusca

    Science.gov (United States)

    Linse, Katrin; Griffiths, Huw J.; Barnes, David K. A.; Clarke, Andrew

    2006-04-01

    For many decades molluscan data have been critical to the establishment of the concept of a global-scale increase in species richness from the poles to the equator. Low polar diversity is key to this latitudinal cline in diversity. Here we investigate richness patterns in the two largest classes of molluscs at both local and regional scales throughout the Southern Ocean. We show that biodiversity is very patchy in the Southern Ocean (at the 1000-km scale) and test the validity of historical biogeographic sub-regions and provinces. We used multivariate analysis of biodiversity patterns at species, genus and family levels to define richness hotspots within the Southern Ocean and transition areas. This process identified the following distinct sub-regions in the Southern Ocean: Antarctic Peninsula, Weddell Sea, East Antarctic—Dronning Maud Land, East Antarctic—Enderby Land, East Antarctic—Wilkes Land, Ross Sea, and the independent Scotia arc and sub Antarctic islands. Patterns of endemism were very different between the bivalves and gastropods. On the basis of distributional ranges and radiation centres of evolutionarily successful families and genera we define three biogeographic provinces in the Southern Ocean: (1) the continental high Antarctic province excluding the Antarctic Peninsula, (2) the Scotia Sea province including the Antarctic Peninsula, and (3) the sub Antarctic province comprising the islands in the vicinity of the Antarctic Circumpolar Current.

  6. 秀丽线虫记忆的分子调控机制%Molecular control of memory in nematode Caenorhabditis elegans

    Institute of Scientific and Technical Information of China (English)

    叶华跃; 叶波平; 王大勇

    2008-01-01

    Model invertebrate organism Caenorhabditis elegans has become an ideal model to unravel the complex processes of memory. C. elegans has three simple forms of memory: memory for thermosensation, memory for chemosensation, and memory for mechanosensation. In the form of memory for mechanosensation, short-term memory, intermediate-term memory,and long-term memory have been extensively studied. The short-term memory and intermediate-term memory may occur in the presynaptic sensory neurons, whereas the long-term memory may occur in the postsynaptic interneurons. This review will discuss the recent progress on genetic and molecular regulation of memory in C. elegans.%模式无脊椎动物秀丽线虫已经成为揭示记忆复杂行为的理想研究模型之一.线虫具有三种简单的记忆形式:对温度感知的记忆、对化学物质感知的记忆以及对于机械刺激感知的记忆.在对机械刺激感知的记忆研究中,短时程、中时程与长时程记忆均得到了系统的分析.其中短时程与中时程记忆可能定位于感觉神经元的前突触,而长时程记忆可能定位于中间神经元的后突触.本文针对线虫中记忆的遗传与分子调控机制近些年的研究进展进行了总结与讨论.

  7. Screening, Molecular Identification and Adaptability Exploration of Antarctic Microbial Flocculant-Producing Bacteria%南极微生物絮凝剂产生菌的筛选、分子鉴定及适应性研究

    Institute of Scientific and Technical Information of China (English)

    杜宁

    2012-01-01

    Seven microbial flocculant-producing bacteria were separated from antarctic seawater,sea ice and marine sediment. The molecular identification of these bacteria was by the way of 16S rRNA gene sequence amplification. Phylogenetic analysis showed that they belonged to Acinetobacter,Arthrobacter,Psychrobacter,Ser-ratia,Pseudomonas and Pseudoalteromonas, respectively. Different carbon sources and nitrogen sources were used to culture the bacteria in order to observe the change of flocculation activity. The bacteria, 1-2 and P2-13-1, were of universal adaptability to different carbon sources and nitrogen sources and had higher flocculation activity in economic culture medium.%从南极海水、海冰、底泥中分离得到7株产絮凝剂的菌株,通过16S rRNA基因序列扩增方法进行分子鉴定,分别隶属于不动杆菌属(Acinetobacter)、节杆菌属(Arthrobacter)、嗜冷杆菌属(Psychrobacter)、沙雷菌属(Serratia)、假单胞菌属(Pseudomonas)和假交替单胞菌属(Pseudoa lteromonas).改变培养基中碳源和氮源的组成并观察絮凝率的变化,筛选出在经济培养基条件下具有较高絮凝活性、同时对碳源和氮源具有普适性的菌株I-2和P2-13-1.

  8. Molecular and morphological characterisation of Xiphinema americanum group species (Nematoda:Dorylaimida)from California and other regions and co-evolution of bacteria from the genus Candidata Xiphinemobacter with nematodes.

    Science.gov (United States)

    The Xiphinema americanum group is a large species complex containing more than two dozen nematode species. They are economically important because they are vectors of nepoviruses. The species differentiation of X. americanum group is problematic because the species share similar morphological charac...

  9. Application and commercialization of nematodes.

    Science.gov (United States)

    Peters, Arne

    2013-07-01

    While nematodes are most commonly known for their negative impact on plants, animals, and humans, there are a number of species which are commercially explored. This review highlights some of the most important success stories for the application of nematodes. They are used as bioindicators in ecological and toxicity studies, as model organisms for elucidating fundamental biological questions and for high throughput screening of drugs. Besides these indirect uses, direct applications include the use of Beddingia siricidicola against a major forest pest and the commercialization of Steinernema, Heterorhabditis, and Phasmarhabditis as biological pest control products. New directions for the commercialization of nematodes are the use as living food, specifically loaded with essential nutrients for various fish and shrimp larvae. Even human parasites or closely related species have been successfully used for curing autoimmune disorders and are currently in the process of being developed as drugs. With the striving development of life sciences, we are likely to see more applications for nematodes in the future. A prerequisite is that we continue to explore the vast number of yet undiscovered nematode species.

  10. Nematode neuropeptides as transgenic nematicides.

    Science.gov (United States)

    Warnock, Neil D; Wilson, Leonie; Patten, Cheryl; Fleming, Colin C; Maule, Aaron G; Dalzell, Johnathan J

    2017-02-01

    Plant parasitic nematodes (PPNs) seriously threaten global food security. Conventionally an integrated approach to PPN management has relied heavily on carbamate, organophosphate and fumigant nematicides which are now being withdrawn over environmental health and safety concerns. This progressive withdrawal has left a significant shortcoming in our ability to manage these economically important parasites, and highlights the need for novel and robust control methods. Nematodes can assimilate exogenous peptides through retrograde transport along the chemosensory amphid neurons. Peptides can accumulate within cells of the central nerve ring and can elicit physiological effects when released to interact with receptors on adjoining cells. We have profiled bioactive neuropeptides from the neuropeptide-like protein (NLP) family of PPNs as novel nematicides, and have identified numerous discrete NLPs that negatively impact chemosensation, host invasion and stylet thrusting of the root knot nematode Meloidogyne incognita and the potato cyst nematode Globodera pallida. Transgenic secretion of these peptides from the rhizobacterium, Bacillus subtilis, and the terrestrial microalgae Chlamydomonas reinhardtii reduce tomato infection levels by up to 90% when compared with controls. These data pave the way for the exploitation of nematode neuropeptides as a novel class of plant protective nematicide, using novel non-food transgenic delivery systems which could be deployed on farmer-preferred cultivars.

  11. Molecular Cloning and Optimization for High Level Expression of Cold-Adapted Serine Protease from Antarctic Yeast Glaciozyma antarctica PI12

    Directory of Open Access Journals (Sweden)

    Norsyuhada Alias

    2014-01-01

    Full Text Available Psychrophilic basidiomycete yeast, Glaciozyma antarctica strain PI12, was shown to be a protease-producer. Isolation of the PI12 protease gene from genomic and mRNA sequences allowed determination of 19 exons and 18 introns. Full-length cDNA of PI12 protease gene was amplified by rapid amplification of cDNA ends (RACE strategy with an open reading frame (ORF of 2892 bp, coded for 963 amino acids. PI12 protease showed low homology with the subtilisin-like protease from fungus Rhodosporidium toruloides (42% identity and no homology to other psychrophilic proteases. The gene encoding mature PI12 protease was cloned into Pichia pastoris expression vector, pPIC9, and positioned under the induction of methanol-alcohol oxidase (AOX promoter. The recombinant PI12 protease was efficiently secreted into the culture medium driven by the Saccharomyces cerevisiae α-factor signal sequence. The highest protease production (28.3 U/ml was obtained from P. pastoris GS115 host (GpPro2 at 20°C after 72 hours of postinduction time with 0.5% (v/v of methanol inducer. The expressed protein was detected by SDS-PAGE and activity staining with a molecular weight of 99 kDa.

  12. Antarctic crabs: invasion or endurance?

    Science.gov (United States)

    Griffiths, Huw J; Whittle, Rowan J; Roberts, Stephen J; Belchier, Mark; Linse, Katrin

    2013-01-01

    Recent scientific interest following the "discovery" of lithodid crabs around Antarctica has centred on a hypothesis that these crabs might be poised to invade the Antarctic shelf if the recent warming trend continues, potentially decimating its native fauna. This "invasion hypothesis" suggests that decapod crabs were driven out of Antarctica 40-15 million years ago and are only now returning as "warm" enough habitats become available. The hypothesis is based on a geographically and spatially poor fossil record of a different group of crabs (Brachyura), and examination of relatively few Recent lithodid samples from the Antarctic slope. In this paper, we examine the existing lithodid fossil record and present the distribution and biogeographic patterns derived from over 16,000 records of Recent Southern Hemisphere crabs and lobsters. Globally, the lithodid fossil record consists of only two known specimens, neither of which comes from the Antarctic. Recent records show that 22 species of crabs and lobsters have been reported from the Southern Ocean, with 12 species found south of 60 °S. All are restricted to waters warmer than 0 °C, with their Antarctic distribution limited to the areas of seafloor dominated by Circumpolar Deep Water (CDW). Currently, CDW extends further and shallower onto the West Antarctic shelf than the known distribution ranges of most lithodid species examined. Geological evidence suggests that West Antarctic shelf could have been available for colonisation during the last 9,000 years. Distribution patterns, species richness, and levels of endemism all suggest that, rather than becoming extinct and recently re-invading from outside Antarctica, the lithodid crabs have likely persisted, and even radiated, on or near to Antarctic slope. We conclude there is no evidence for a modern-day "crab invasion". We recommend a repeated targeted lithodid sampling program along the West Antarctic shelf to fully test the validity of the "invasion hypothesis".

  13. Anhydrobiosis and freezing-tolerance: adaptations that facilitate the establishment of Panagrolaimus nematodes in polar habitats.

    Directory of Open Access Journals (Sweden)

    Lorraine M McGill

    Full Text Available Anhydrobiotic animals can survive the loss of both free and bound water from their cells. While in this state they are also resistant to freezing. This physiology adapts anhydrobiotes to harsh environments and it aids their dispersal. Panagrolaimus davidi, a bacterial feeding anhydrobiotic nematode isolated from Ross Island Antarctica, can survive intracellular ice formation when fully hydrated. A capacity to survive freezing while fully hydrated has also been observed in some other Antarctic nematodes. We experimentally determined the anhydrobiotic and freezing-tolerance phenotypes of 24 Panagrolaimus strains from tropical, temperate, continental and polar habitats and we analysed their phylogenetic relationships. We found that several other Panagrolaimus isolates can also survive freezing when fully hydrated and that tissue extracts from these freezing-tolerant nematodes can inhibit the growth of ice crystals. We show that P. davidi belongs to a clade of anhydrobiotic and freezing-tolerant panagrolaimids containing strains from temperate and continental regions and that P. superbus, an early colonizer at Surtsey island, Iceland after its volcanic formation, is closely related to a species from Pennsylvania, USA. Ancestral state reconstructions show that anhydrobiosis evolved deep in the phylogeny of Panagrolaimus. The early-diverging Panagrolaimus lineages are strongly anhydrobiotic but weakly freezing-tolerant, suggesting that freezing tolerance is most likely a derived trait. The common ancestors of the davidi and the superbus clades were anhydrobiotic and also possessed robust freezing tolerance, along with a capacity to inhibit the growth and recrystallization of ice crystals. Unlike other endemic Antarctic nematodes, the life history traits of P. davidi do not show evidence of an evolved response to polar conditions. Thus we suggest that the colonization of Antarctica by P. davidi and of Surtsey by P. superbus may be examples of recent

  14. Anhydrobiosis and freezing-tolerance: adaptations that facilitate the establishment of Panagrolaimus nematodes in polar habitats.

    Science.gov (United States)

    McGill, Lorraine M; Shannon, Adam J; Pisani, Davide; Félix, Marie-Anne; Ramløv, Hans; Dix, Ilona; Wharton, David A; Burnell, Ann M

    2015-01-01

    Anhydrobiotic animals can survive the loss of both free and bound water from their cells. While in this state they are also resistant to freezing. This physiology adapts anhydrobiotes to harsh environments and it aids their dispersal. Panagrolaimus davidi, a bacterial feeding anhydrobiotic nematode isolated from Ross Island Antarctica, can survive intracellular ice formation when fully hydrated. A capacity to survive freezing while fully hydrated has also been observed in some other Antarctic nematodes. We experimentally determined the anhydrobiotic and freezing-tolerance phenotypes of 24 Panagrolaimus strains from tropical, temperate, continental and polar habitats and we analysed their phylogenetic relationships. We found that several other Panagrolaimus isolates can also survive freezing when fully hydrated and that tissue extracts from these freezing-tolerant nematodes can inhibit the growth of ice crystals. We show that P. davidi belongs to a clade of anhydrobiotic and freezing-tolerant panagrolaimids containing strains from temperate and continental regions and that P. superbus, an early colonizer at Surtsey island, Iceland after its volcanic formation, is closely related to a species from Pennsylvania, USA. Ancestral state reconstructions show that anhydrobiosis evolved deep in the phylogeny of Panagrolaimus. The early-diverging Panagrolaimus lineages are strongly anhydrobiotic but weakly freezing-tolerant, suggesting that freezing tolerance is most likely a derived trait. The common ancestors of the davidi and the superbus clades were anhydrobiotic and also possessed robust freezing tolerance, along with a capacity to inhibit the growth and recrystallization of ice crystals. Unlike other endemic Antarctic nematodes, the life history traits of P. davidi do not show evidence of an evolved response to polar conditions. Thus we suggest that the colonization of Antarctica by P. davidi and of Surtsey by P. superbus may be examples of recent "ecological fitting

  15. Burrowing nematodes from Colombia and their relationship with Radopholus similis populations,R. arabocoffeae and R. duriophilus

    NARCIS (Netherlands)

    Múnera Uribe, G.E.; Bert, W.; Vierstraete, A.R.; Peña, de la E.; Moens, M.; Decraemer, W.

    2010-01-01

    Two burrowing nematode populations from Colombia were characterised using morphological, morphometric and molecular criteria. The morphological and morphometric characters of the two populations did not differ from those of Radopholus similis. The phylogenetic analysis based on sequence comparison o

  16. Functional Characterization of a Novel Class of Morantel-Sensitive Acetylcholine Receptors in Nematodes.

    Directory of Open Access Journals (Sweden)

    Elise Courtot

    2015-12-01

    Full Text Available Acetylcholine receptors are pentameric ligand-gated channels involved in excitatory neuro-transmission in both vertebrates and invertebrates. In nematodes, they represent major targets for cholinergic agonist or antagonist anthelmintic drugs. Despite the large diversity of acetylcholine-receptor subunit genes present in nematodes, only a few receptor subtypes have been characterized so far. Interestingly, parasitic nematodes affecting human or animal health possess two closely related members of this gene family, acr-26 and acr-27 that are essentially absent in free-living or plant parasitic species. Using the pathogenic parasitic nematode of ruminants, Haemonchus contortus, as a model, we found that Hco-ACR-26 and Hco-ACR-27 are co-expressed in body muscle cells. We demonstrated that co-expression of Hco-ACR-26 and Hco-ACR-27 in Xenopus laevis oocytes led to the functional expression of an acetylcholine-receptor highly sensitive to the anthelmintics morantel and pyrantel. Importantly we also reported that ACR-26 and ACR-27, from the distantly related parasitic nematode of horses, Parascaris equorum, also formed a functional acetylcholine-receptor highly sensitive to these two drugs. In Caenorhabditis elegans, a free-living model nematode, we demonstrated that heterologous expression of the H. contortus and P. equorum receptors drastically increased its sensitivity to morantel and pyrantel, mirroring the pharmacological properties observed in Xenopus oocytes. Our results are the first to describe significant molecular determinants of a novel class of nematode body wall muscle AChR.

  17. Functional Characterization of a Novel Class of Morantel-Sensitive Acetylcholine Receptors in Nematodes.

    Science.gov (United States)

    Courtot, Elise; Charvet, Claude L; Beech, Robin N; Harmache, Abdallah; Wolstenholme, Adrian J; Holden-Dye, Lindy; O'Connor, Vincent; Peineau, Nicolas; Woods, Debra J; Neveu, Cedric

    2015-12-01

    Acetylcholine receptors are pentameric ligand-gated channels involved in excitatory neuro-transmission in both vertebrates and invertebrates. In nematodes, they represent major targets for cholinergic agonist or antagonist anthelmintic drugs. Despite the large diversity of acetylcholine-receptor subunit genes present in nematodes, only a few receptor subtypes have been characterized so far. Interestingly, parasitic nematodes affecting human or animal health possess two closely related members of this gene family, acr-26 and acr-27 that are essentially absent in free-living or plant parasitic species. Using the pathogenic parasitic nematode of ruminants, Haemonchus contortus, as a model, we found that Hco-ACR-26 and Hco-ACR-27 are co-expressed in body muscle cells. We demonstrated that co-expression of Hco-ACR-26 and Hco-ACR-27 in Xenopus laevis oocytes led to the functional expression of an acetylcholine-receptor highly sensitive to the anthelmintics morantel and pyrantel. Importantly we also reported that ACR-26 and ACR-27, from the distantly related parasitic nematode of horses, Parascaris equorum, also formed a functional acetylcholine-receptor highly sensitive to these two drugs. In Caenorhabditis elegans, a free-living model nematode, we demonstrated that heterologous expression of the H. contortus and P. equorum receptors drastically increased its sensitivity to morantel and pyrantel, mirroring the pharmacological properties observed in Xenopus oocytes. Our results are the first to describe significant molecular determinants of a novel class of nematode body wall muscle AChR.

  18. Emerging spatial patterns in Antarctic prokaryotes

    Directory of Open Access Journals (Sweden)

    Chun Wie eChong

    2015-09-01

    Full Text Available Recent advances in knowledge of patterns of biogeography in terrestrial eukaryotic organisms have led to a fundamental paradigm shift in understanding of the controls and history of life on land in Antarctica, and its interactions over the long term with the glaciological and geological processes that have shaped the continent. However, while it has long been recognized that the terrestrial ecosystems of Antarctica are dominated by microbes and their processes, knowledge of microbial diversity and distributions has lagged far behind that of the macroscopic eukaryote organisms. Increasing human contact with and activity in the continent is leading to risks of biological contamination and change in a region whose isolation has protected it for millions of years at least; these risks may be particularly acute for microbial communities which have, as yet, received scant recognition and attention. Even a matter apparently as straightforward as Protected Area designation in Antarctica requires robust biodiversity data which, in most parts of the continent, remain almost completely unavailable. A range of important contributing factors mean that it is now timely to reconsider the state of knowledge of Antarctic terrestrial prokaryotes. Rapid advances in molecular biological approaches are increasingly demonstrating that bacterial diversity in Antarctica may be far greater than previously thought, and that there is overlap in the environmental controls affecting both Antarctic prokaryotic and eukaryotic communities. Bacterial dispersal mechanisms and colonization patterns remain largely unaddressed, although evidence for regional evolutionary differentiation is rapidly accruing and, with this, there is increasing appreciation of patterns in regional bacterial biogeography in this large part of the globe. In this review, we set out to describe the state of knowledge of Antarctic prokaryote diversity patterns, drawing analogy with those of eukaryote

  19. Environmental contamination in Antarctic ecosystems.

    Science.gov (United States)

    Bargagli, R

    2008-08-01

    Although the remote continent of Antarctica is perceived as the symbol of the last great wilderness, the human presence in the Southern Ocean and the continent began in the early 1900s for hunting, fishing and exploration, and many invasive plant and animal species have been deliberately introduced in several sub-Antarctic islands. Over the last 50 years, the development of research and tourism have locally affected terrestrial and marine coastal ecosystems through fuel combustion (for transportation and energy production), accidental oil spills, waste incineration and sewage. Although natural "barriers" such as oceanic and atmospheric circulation protect Antarctica from lower latitude water and air masses, available data on concentrations of metals, pesticides and other persistent pollutants in air, snow, mosses, lichens and marine organisms show that most persistent contaminants in the Antarctic environment are transported from other continents in the Southern Hemisphere. At present, levels of most contaminants in Antarctic organisms are lower than those in related species from other remote regions, except for the natural accumulation of Cd and Hg in several marine organisms and especially in albatrosses and petrels. The concentrations of organic pollutants in the eggs of an opportunistic top predator such as the south polar skua are close to those that may cause adverse health effects. Population growth and industrial development in several countries of the Southern Hemisphere are changing the global pattern of persistent anthropogenic contaminants and new classes of chemicals have already been detected in the Antarctic environment. Although the Protocol on Environmental Protection to the Antarctic Treaty provides strict guidelines for the protection of the Antarctic environment and establishes obligations for all human activity in the continent and the Southern Ocean, global warming, population growth and industrial development in countries of the Southern

  20. Plant Nematodes Occurring in Arkansas

    OpenAIRE

    Wehunt, E. J.; Golden, A. M.; Robbins, R. T.

    1989-01-01

    A total of 110 species of plant nematodes were found in various habitats in Arkansas. Thirty species from 19 genera are reported here for the first time. Included in the new reports are the known plant pathogens Criconemella onoense, Hirshmanniella oryzae, Longidorus elongatus, and Pratylenchus pratensis.

  1. Moessbauer study of thermal metamorphosed Antarctic meteorites

    Energy Technology Data Exchange (ETDEWEB)

    Scorzelli, R.B. (Centro Brasileiro de Pesquisas Fisicas, Rio de Janeiro, RJ (Brazil)); Galvao da Silva, E. (Centro Brasileiro de Pesquisas Fisicas, Rio de Janeiro, RJ (Brazil) Dept. de Fisica, Univ. Federal de Minas Gerais, Belo Horizonte (Brazil)); Souza Azevedo, I. (Centro Brasileiro de Pesquisas Fisicas, Rio de Janeiro, RJ (Brazil))

    1994-02-01

    In this paper we report on variable temperature Moessbauer spectroscopy measurements on Yamato-82162 and Yamato-86720. These Antarctic carbonaceous chondrites contrast with other non-Antarctic carbonaceous chondrites in which no evidences of thermal metamorphism have been found. (orig.)

  2. Species specific molecular diagnosis of burrowing nematode (Radopholus similis)%香蕉穿孔线虫(Radopholus similis)特异性分子检测技术研究

    Institute of Scientific and Technical Information of China (English)

    王琼; 耿丽凤; 张东升; 彭德良

    2011-01-01

    香蕉穿孔线虫(Radopholus similis)是一种国际公认的极具毁灭性的有害线虫,也是我国重要的进境检疫性有害生物.利用线虫通用引物对香蕉穿孔线虫7个不同群体的ITS进行PCR扩增、克隆及测序,获得ITS片段序列长度为7060bp.经与国外香蕉穿孔线虫种群及近缘种的ITS序列进行比对及同源性分析,构建设计了1对香蕉穿孔线虫的特异性引物RsFl/RsRl,特异性扩增片段长度为271bp;同时引入D2A/D3B作内标,研究出特异性检测香蕉穿孔线虫的一步双重PCR分子技术和方法,该项检测技术特异性好,耗时较短、操作简便、可靠.%The burrowing nematode, Radopholus similis is a quarantine nematode pest in the world. Using the universal primer pairs, the ITS region were amplified and sequenced, the ITS length were 706 bp, after analysis and alignment with known ITS sequences of R. similis. One species specific primer pairs, named RsFl/RsRl, was designed to diagnosis of burrowing nematode, the specific fragment was 271 bp. Combined the primer pairs D2A/D3B, the duplex PCR diagnosis for R. similis were developed to distinguish populations of R. similis from other plant parasitic nematode species, only R. similis populations could yield specie specific 271 bp fragment, the other plant parasitic nematodes could not yield species specific fragment.

  3. Anthelmintic resistance in equine nematodes

    Science.gov (United States)

    Matthews, Jacqueline B.

    2014-01-01

    Anthelmintics have been applied indiscriminately to control horse nematodes for over 40 years. Three broad-spectrum anthelmintic classes are currently registered for nematode control in horses: benzimidazoles (fenbendazole, oxibendazole), tetrahydropyrimidines (pyrantel) and macrocyclic lactones (ivermectin, moxidectin). Generally, control strategies have focused on nematode egg suppression regimens that involve the frequent application of anthelmintics to all horses at intervals based on strongyle egg reappearance periods after treatment. The widespread use of such programmes has substantially reduced clinical disease, especially that associated with large strongyle species; however, high treatment frequency has led to considerable selection pressure for anthelmintic resistance, particularly in cyathostomin species. Field studies published over the last decade indicate that benzimidazole resistance is widespread globally in cyathostomins and there are also many reports of resistance to pyrantel in these worms. Cyathostomin resistance to macrocyclic lactone compounds is emerging, principally measured as a reduction in strongyle egg reappearance time observed after treatment. Ivermectin resistance is a further concern in the small intestinal nematode, Parascaris equorum, an important pathogen of foals. These issues indicate that horse nematodes must now be controlled using methods less dependent on anthelmintic use and more reliant on management practices designed to reduce the force of infection in the environment. Such strategies include improved grazing management integrated with targeted anthelmintic administration involving faecal egg count (FEC)-directed treatments. The latter require that the supporting diagnostic tests available are robust and practically applicable. Recent research has focused on maximising the value of FEC analysis in horses and on optimizing protocols for anthelmintic efficacy testing. Other studies have sought to develop diagnostics

  4. Anthelmintic resistance in equine nematodes

    Directory of Open Access Journals (Sweden)

    Jacqueline B. Matthews

    2014-12-01

    Full Text Available Anthelmintics have been applied indiscriminately to control horse nematodes for over 40 years. Three broad-spectrum anthelmintic classes are currently registered for nematode control in horses: benzimidazoles (fenbendazole, oxibendazole, tetrahydropyrimidines (pyrantel and macrocyclic lactones (ivermectin, moxidectin. Generally, control strategies have focused on nematode egg suppression regimens that involve the frequent application of anthelmintics to all horses at intervals based on strongyle egg reappearance periods after treatment. The widespread use of such programmes has substantially reduced clinical disease, especially that associated with large strongyle species; however, high treatment frequency has led to considerable selection pressure for anthelmintic resistance, particularly in cyathostomin species. Field studies published over the last decade indicate that benzimidazole resistance is widespread globally in cyathostomins and there are also many reports of resistance to pyrantel in these worms. Cyathostomin resistance to macrocyclic lactone compounds is emerging, principally measured as a reduction in strongyle egg reappearance time observed after treatment. Ivermectin resistance is a further concern in the small intestinal nematode, Parascaris equorum, an important pathogen of foals. These issues indicate that horse nematodes must now be controlled using methods less dependent on anthelmintic use and more reliant on management practices designed to reduce the force of infection in the environment. Such strategies include improved grazing management integrated with targeted anthelmintic administration involving faecal egg count (FEC-directed treatments. The latter require that the supporting diagnostic tests available are robust and practically applicable. Recent research has focused on maximising the value of FEC analysis in horses and on optimizing protocols for anthelmintic efficacy testing. Other studies have sought to develop

  5. Regulating Antarctic Tourism and the Precautionary Principle

    NARCIS (Netherlands)

    Bastmeijer, C.J.; Roura, R.

    2004-01-01

    On the basis of an overview of the developments in Antarctic tourism since 1956, this current development note examines the issue of international regulation of Antarctic tourism. After discussing one of the main management issues in respect of Antarctic tourism ¿ the assessment and prevention of cu

  6. Bacteria used in the biological control of plant-parasitic nematodes: populations, mechanisms of action, and future prospects.

    Science.gov (United States)

    Tian, Baoyu; Yang, Jinkui; Zhang, Ke-Qin

    2007-08-01

    As a group of important natural enemies of nematode pests, nematophagous bacteria exhibit diverse modes of action: these include parasitizing; producing toxins, antibiotics, or enzymes; competing for nutrients; inducing systemic resistance of plants; and promoting plant health. They act synergistically on nematodes through the direct suppression of nematodes, promoting plant growth, and facilitating the rhizosphere colonization and activity of microbial antagonists. This review details the nematophagous bacteria known to date, including parasitic bacteria, opportunistic parasitic bacteria, rhizobacteria, Cry protein-forming bacteria, endophytic bacteria and symbiotic bacteria. We focus on recent research developments concerning their pathogenic mechanisms at the biochemical and molecular levels. Increased understanding of the molecular basis of the various pathogenic mechanisms of the nematophagous bacteria could potentially enhance their value as effective biological control agents. We also review a number of molecular biological approaches currently used in the study of bacterial pathogenesis in nematodes. We discuss their merits, limitations and potential uses.

  7. Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward Crown Clades

    NARCIS (Netherlands)

    Holterman, M.H.M.; Wurff, van der A.W.G.; Elsen, van den S.J.J.; Megen, van H.H.B.; Bongers, A.M.T.; Holovachov, O.V.; Bakker, J.; Helder, J.

    2006-01-01

    Inference of evolutionary relationships between nematodes is severely hampered by their conserved morphology, the high frequency of homoplasy, and the scarcity of phylum-wide molecular data. To study the origin of nematode radiation and to unravel the phylogenetic relationships between distantly rel

  8. Draft genome of the filarial nematode parasite Brugia malayi.

    Science.gov (United States)

    Ghedin, Elodie; Wang, Shiliang; Spiro, David; Caler, Elisabet; Zhao, Qi; Crabtree, Jonathan; Allen, Jonathan E; Delcher, Arthur L; Guiliano, David B; Miranda-Saavedra, Diego; Angiuoli, Samuel V; Creasy, Todd; Amedeo, Paolo; Haas, Brian; El-Sayed, Najib M; Wortman, Jennifer R; Feldblyum, Tamara; Tallon, Luke; Schatz, Michael; Shumway, Martin; Koo, Hean; Salzberg, Steven L; Schobel, Seth; Pertea, Mihaela; Pop, Mihai; White, Owen; Barton, Geoffrey J; Carlow, Clotilde K S; Crawford, Michael J; Daub, Jennifer; Dimmic, Matthew W; Estes, Chris F; Foster, Jeremy M; Ganatra, Mehul; Gregory, William F; Johnson, Nicholas M; Jin, Jinming; Komuniecki, Richard; Korf, Ian; Kumar, Sanjay; Laney, Sandra; Li, Ben-Wen; Li, Wen; Lindblom, Tim H; Lustigman, Sara; Ma, Dong; Maina, Claude V; Martin, David M A; McCarter, James P; McReynolds, Larry; Mitreva, Makedonka; Nutman, Thomas B; Parkinson, John; Peregrín-Alvarez, José M; Poole, Catherine; Ren, Qinghu; Saunders, Lori; Sluder, Ann E; Smith, Katherine; Stanke, Mario; Unnasch, Thomas R; Ware, Jenna; Wei, Aguan D; Weil, Gary; Williams, Deryck J; Zhang, Yinhua; Williams, Steven A; Fraser-Liggett, Claire; Slatko, Barton; Blaxter, Mark L; Scott, Alan L

    2007-09-21

    Parasitic nematodes that cause elephantiasis and river blindness threaten hundreds of millions of people in the developing world. We have sequenced the approximately 90 megabase (Mb) genome of the human filarial parasite Brugia malayi and predict approximately 11,500 protein coding genes in 71 Mb of robustly assembled sequence. Comparative analysis with the free-living, model nematode Caenorhabditis elegans revealed that, despite these genes having maintained little conservation of local synteny during approximately 350 million years of evolution, they largely remain in linkage on chromosomal units. More than 100 conserved operons were identified. Analysis of the predicted proteome provides evidence for adaptations of B. malayi to niches in its human and vector hosts and insights into the molecular basis of a mutualistic relationship with its Wolbachia endosymbiont. These findings offer a foundation for rational drug design.

  9. Survey of Nematodes on Coffee in Hawaii

    OpenAIRE

    Schenck, S; Schmitt, D. P.

    1992-01-01

    Surveys of coffee fields in Hawaii during 1989-1991 indicated the presence of 10 nematode species in 8 genera. After coffee was planted in fields previously in sugarcane, populations of Criconemella sp. and Pratylenchus zeae gradually decreased, while Rotylenchulus reniformis and, in one field, Meloidogyne incognita, increased in numbers. Coffee is a poor host of R. reniformis, but weeds in coffee plantations may support this nematode. At present, nematodes pose no serious threat to Hawaii's ...

  10. Special Stamps:Antarctic Scenery

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    In July 2002, the State Postal Bureau issued a set of three stamps, whose theme is Antarctic scenery.The first stamp depicts an iceberg. Antarctica is where 90 percent of the world’s ice exists. Each year countless icebergs float majestically through the sea, and are a magnificent scenic feature of Antarctica.

  11. Principles of the Antarctic Treaty

    Science.gov (United States)

    Candidi, M.

    The operation of any base or expedition to Antarctica is regulated by the mutual agreement among nations in the “Antarctic Treaty”. This treaty deals with the major aspects of life in Antarctica and its main principles and provisions are described in what follows.

  12. Evidence for widespread endemism among Antarctic micro-organisms

    Science.gov (United States)

    Vyverman, Wim; Verleyen, Elie; Wilmotte, Annick; Hodgson, Dominic A.; Willems, Anne; Peeters, Karolien; Van de Vijver, Bart; De Wever, Aaike; Leliaert, Frederik; Sabbe, Koen

    2010-08-01

    Understanding the enormous diversity of microbes, their multiple roles in the functioning of ecosystems, and their response to large-scale environmental and climatic changes, are at the forefront of the international research agenda. In Antarctica, where terrestrial and lacustrine environments are predominantly microbial realms, an active and growing community of microbial ecologists is probing this diversity and its role in ecosystem processes. In a broader context, this work has the potential to make a significant contribution to the long-standing debate as to whether microbes are fundamentally different from macroorganisms in their biogeography. According to the ubiquity hypothesis, microbial community composition is not constrained by dispersal limitation and is solely the result of species sorting along environmental gradients. However, recent work on several groups of microalgae is challenging this view. Global analyses using morphology-based diatom inventories have demonstrated that, in addition to environmental harshness, geographical isolation underlies the strong latitudinal gradients in local and regional diversity in the Southern hemisphere. Increasing evidence points to a strong regionalization of diatom floras in the Antarctic and sub-Antarctic regions, mirroring the biogeographical regions that have been recognized for macroorganisms. Likewise, the application of molecular-phylogenetic techniques to cultured and uncultured diversity revealed a high number of Antarctic endemics among cyanobacteria and green algae. Calibration of these phylogenies suggests that several clades have an ancient evolutionary history within the Antarctic continent, possibly dating back to 330 Ma. These findings are in line with the current view on the origin of Antarctic terrestrial metazoa, including springtails, chironomids and mites, with most evidence suggesting a long history of geographic isolation on a multi-million year, even pre-Gondwana break-up timescale.

  13. Mechanisms of host seeking by parasitic nematodes.

    Science.gov (United States)

    Gang, Spencer S; Hallem, Elissa A

    2016-07-01

    The phylum Nematoda comprises a diverse group of roundworms that includes parasites of vertebrates, invertebrates, and plants. Human-parasitic nematodes infect more than one billion people worldwide and cause some of the most common neglected tropical diseases, particularly in low-resource countries [1]. Parasitic nematodes of livestock and crops result in billions of dollars in losses each year [1]. Many nematode infections are treatable with low-cost anthelmintic drugs, but repeated infections are common in endemic areas and drug resistance is a growing concern with increasing therapeutic and agricultural administration [1]. Many parasitic nematodes have an environmental infective larval stage that engages in host seeking, a process whereby the infective larvae use sensory cues to search for hosts. Host seeking is a complex behavior that involves multiple sensory modalities, including olfaction, gustation, thermosensation, and humidity sensation. As the initial step of the parasite-host interaction, host seeking could be a powerful target for preventative intervention. However, host-seeking behavior remains poorly understood. Here we review what is currently known about the host-seeking behaviors of different parasitic nematodes, including insect-parasitic nematodes, mammalian-parasitic nematodes, and plant-parasitic nematodes. We also discuss the neural bases of these behaviors.

  14. Isolation of pristionchus nematodes from beetles.

    Science.gov (United States)

    Rae, Robbie; Schlager, Benjamin; Sommer, Ralf J

    2008-10-01

    INTRODUCTIONIn this procedure, nematodes disembark from a beetle carcass and feed on Escherichia coli OP50. The nematodes are then monitored for a few days and identified using simple morphological characteristics. This method is rapid, easy, and biased for Pristionchus species.

  15. Nematode survival in relation to soil moisture

    NARCIS (Netherlands)

    Simons, W.R.

    1973-01-01

    Established nematode populations are very persistent in the soil. It is known that they need sufficient soil moisture for movement, feeding and reproduction (fig. 5), and that there are adverse soil moisture conditions which they cannot survive. The influence of soil moisture on survival of nematode

  16. Biological Control of Nematodes with Bacteria

    Science.gov (United States)

    Biological control of nematodes is receiving increased attention as environmental considerations with the use of nematicides have increased in importance and their high cost prohibits use on many crops. In addition, nematode resistant cultivars are not available for many crops and resistance that i...

  17. Blends of ascarosides regulate dispersal in nematodes

    Science.gov (United States)

    Blends of ascarosides regulate dispersal in nematodes Presenter: Dr. Fatma Kaplan Dispersal is an important behavior for many organisms. It can easily be observed when infectious juveniles of entomopathogenic nematodes (Steinernema and Heterorhabditis) leave a consumed insect host. Dauer larvae of ...

  18. How do humans affect wildlife nematodes?

    Science.gov (United States)

    Weinstein, Sara B.; Lafferty, Kevin D.

    2015-01-01

    Human actions can affect wildlife and their nematode parasites. Species introductions and human-facilitated range expansions can create new host–parasite interactions. Novel hosts can introduce parasites and have the potential to both amplify and dilute nematode transmission. Furthermore, humans can alter existing nematode dynamics by changing host densities and the abiotic conditions that affect larval parasite survival. Human impacts on wildlife might impair parasites by reducing the abundance of their hosts; however, domestic animal production and complex life cycles can maintain transmission even when wildlife becomes rare. Although wildlife nematodes have many possible responses to human actions, understanding host and parasite natural history, and the mechanisms behind the changing disease dynamics might improve disease control in the few cases where nematode parasitism impacts wildlife.

  19. Multibranch Antarctic Seismic Data Library facilitates research

    Science.gov (United States)

    Cooper, Alan K.

    In 1991, investigators from 11 nations involved in Antarctic multichannel seismic (MCS) reflection research sought a way to keep the Antarctic Treaty's promise of open access to data, and in the process to encourage Earth-science research using seismic data. The Antarctic Seismic Data Library System for Cooperative Research (SDLS) was the solution, and is now a recommendation of the Antarctic Treaty Consultative Parties (ATCP). Today—at 12 branches spanning the world—researchers can access over 68,000 km of marine MCS data to use for cooperative research.More than 150,000 km of MCS data have been accumulated since 1976 by 13 countries on nearly 70 cruises. The majority of data now in the library cover the Ross Sea, Wilkes Land, and Prydz Bay sectors of the Antarctic margin, with smaller amounts from the Weddell Sea and the Antarctic Peninsula.

  20. Genetic analysis of root-knot nematode resistance in potato

    NARCIS (Netherlands)

    Draaistra, J.

    2006-01-01

    The development of potato varieties with resistance towards the potato cyst nematode, allowed a dramatic decrease of the use of nematicides. Subsequently the population of the free living nematodes and the root-knot nematodes ( Meloidogyne spp.) has increased. Among the root-knot nematodes, three Me

  1. Snow on Antarctic sea ice

    Science.gov (United States)

    Massom, Robert A.; Eicken, Hajo; Hass, Christian; Jeffries, Martin O.; Drinkwater, Mark R.; Sturm, Matthew; Worby, Anthony P.; Wu, Xingren; Lytle, Victoria I.; Ushio, Shuki; Morris, Kim; Reid, Phillip A.; Warren, Stephen G.; Allison, Ian

    2001-08-01

    Snow on Antarctic sea ice plays a complex and highly variable role in air-sea-ice interaction processes and the Earth's climate system. Using data collected mostly during the past 10 years, this paper reviews the following topics: snow thickness and snow type and their geographical and seasonal variations; snow grain size, density, and salinity; frequency of occurrence of slush; thermal conductivity, snow surface temperature, and temperature gradients within snow; and the effect of snow thickness on albedo. Major findings include large regional and seasonal differences in snow properties and thicknesses; the consequences of thicker snow and thinner ice in the Antarctic relative to the Arctic (e.g., the importance of flooding and snow-ice formation); the potential impact of increasing snowfall resulting from global climate change; lower observed values of snow thermal conductivity than those typically used in models; periodic large-scale melt in winter; and the contrast in summer melt processes between the Arctic and the Antarctic. Both climate modeling and remote sensing would benefit by taking account of the differences between the two polar regions.

  2. Geographic names of the Antarctic

    Science.gov (United States)

    ,; ,; ,; ,; Alberts, Fred G.

    1995-01-01

    This gazetteer contains 12,710 names approved by the United States Board on Geographic Names and the Secretary of the Interior for features in Antarctica and the area extending northward to the Antarctic Convergence. Included in this geographic area, the Antarctic region, are the off-lying South Shetland Islands, the South Orkney Islands, the South Sandwich Islands, South Georgia, Bouvetøya, Heard Island, and the Balleny Islands. These names have been approved for use by U.S. Government agencies. Their use by the Antarctic specialist and the public is highly recommended for the sake of accuracy and uniformity. This publication, which supersedes previous Board gazetteers or lists for the area, contains names approved as recently as December 1994. The basic name coverage of this gazetteer corresponds to that of maps at the scale of 1:250,000 or larger for coastal Antarctica, the off-lying islands, and isolated mountains and ranges of the continent. Much of the interior of Antarctica is a featureless ice plateau. That area has been mapped at a smaller scale and is nearly devoid of toponyms. All of the names are for natural features, such as mountains, glaciers, peninsulas, capes, bays, islands, and subglacial entities. The names of scientific stations have not been listed alphabetically, but they may appear in the texts of some decisions. For the names of submarine features, reference should be made to the Gazetteer of Undersea Features, 4th edition, U.S. Board on Geographic Names, 1990.

  3. Antarctic skuas recognize individual humans.

    Science.gov (United States)

    Lee, Won Young; Han, Yeong-Deok; Lee, Sang-Im; Jablonski, Piotr G; Jung, Jin-Woo; Kim, Jeong-Hoon

    2016-07-01

    Recent findings report that wild animals can recognize individual humans. To explain how the animals distinguish humans, two hypotheses are proposed. The high cognitive abilities hypothesis implies that pre-existing high intelligence enabled animals to acquire such abilities. The pre-exposure to stimuli hypothesis suggests that frequent encounters with humans promote the acquisition of discriminatory abilities in these species. Here, we examine individual human recognition abilities in a wild Antarctic species, the brown skua (Stercorarius antarcticus), which lives away from typical human settlements and was only recently exposed to humans due to activities at Antarctic stations. We found that, as nest visits were repeated, the skua parents responded at further distances and were more likely to attack the nest intruder. Also, we demonstrated that seven out of seven breeding pairs of skuas selectively responded to a human nest intruder with aggression and ignored a neutral human who had not previously approached the nest. The results indicate that Antarctic skuas, a species that typically inhabited in human-free areas, are able to recognize individual humans who disturbed their nests. Our findings generally support the high cognitive abilities hypothesis, but this ability can be acquired during a relatively short period in the life of an individual as a result of interactions between individual birds and humans.

  4. A checklist of nematode parasites from Indonesian murids.

    Science.gov (United States)

    Dewi, Kartika; Purwaningsih, Endang

    2013-01-24

    A checklist of nematode parasites from Indonesian murids with their geographic distribution is presented. This checklist is compiled from three sources: the catalogue of nematode parasites of Museum Zoologicum Bogoriense (unpublished specimens in the collection), data from our previous research and articles on nematodes of Indonesian murids. This checklist is presented as a list of nematode parasites with host information, and a host list with information on their nematodes. This paper reports 38 nominal species of nematodes and 13 species identified to the generic level only. The nematodes reported comprise 32 genera and 17 families parasitizing 32 species of Indonesian murids.

  5. Parasitic nematodes - from genomes to control.

    Science.gov (United States)

    Mitreva, Makedonka; Zarlenga, Dante S; McCarter, James P; Jasmer, Douglas P

    2007-08-19

    The diseases caused by parasitic nematodes in domestic and companion animals are major factors that decrease production and quality of the agricultural products. Methods available for the control of the parasitic nematode infections are mainly based on chemical treatment, non-chemical management practices, immune modulation and biological control. However, even with integrated pest management that frequently combines these approaches, the effective and long-lasting control strategies are hampered by the persistent exposure of host animals to environmental stages of parasites, the incomplete protective response of the host and acquisition of anthelmintic resistance by an increasing number of parasitic nematodes. Therefore, the challenges to improve control of parasitic nematode infections are multi-fold and no single category of information will meet them all. However, new information, such as nematode genomics, functional genomics and proteomics, can strengthen basic and applied biological research aimed to develop improvements. In this review we will, summarize existing control strategies of nematode infections and discuss ongoing developments in nematode genomics. Genomics approaches offer a growing and fundamental base of information, which when coupled with downstream functional genomics and proteomics can accelerate progress towards developing more efficient and sustainable control programs.

  6. The “potato road” and biogeographic history of potato cyst nematode populations from different continents

    Directory of Open Access Journals (Sweden)

    Or Violeta

    2014-01-01

    Full Text Available The general opinion about the introduction of potato in Europe is the one regarding the direction from South America to Spain and subsequent distribution to other continents. Some historical data point out an alternative road. The potato spread from its place of origin to other continents in the light of parasite-host relationship, relying on nematode molecular data, is discussed in the present work. Biogeographic history of potato cyst nematode populations from different continents is in congruence with historical records. [Projekat Ministarstva nauke Republike Srbije, br. TR 31018 i br. III 46007

  7. Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii.

    Directory of Open Access Journals (Sweden)

    John Fosu-Nyarko

    Full Text Available The beet cyst nematode, Heterodera schachtii, is a major root pest that significantly impacts the yield of sugar beet, brassicas and related species. There has been limited molecular characterisation of this important plant pathogen: to identify target genes for its control the transcriptome of the pre-parasitic J2 stage of H. schachtii was sequenced using Roche GS FLX. Ninety seven percent of reads (i.e., 387,668 with an average PHRED score > 22 were assembled with CAP3 and CLC Genomics Workbench into 37,345 and 47,263 contigs, respectively. The transcripts were annotated by comparing with gene and genomic sequences of other nematodes and annotated proteins on public databases. The annotated transcripts were much more similar to sequences of Heterodera glycines than to those of Globodera pallida and root knot nematodes (Meloidogyne spp.. Analysis of these transcripts showed that a subset of 2,918 transcripts was common to free-living and plant parasitic nematodes suggesting that this subset is involved in general nematode metabolism and development. A set of 148 contigs and 183 singletons encoding putative homologues of effectors previously characterised for plant parasitic nematodes were also identified: these are known to be important for parasitism of host plants during migration through tissues or feeding from cells or are thought to be involved in evasion or modulation of host defences. In addition, the presence of sequences from a nematode virus is suggested. The sequencing and annotation of this transcriptome significantly adds to the genetic data available for H. schachtii, and identifies genes primed to undertake required roles in the critical pre-parasitic and early post-parasitic J2 stages. These data provide new information for identifying potential gene targets for future protection of susceptible crops against H. schachtii.

  8. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Postnikova, Olga A; Hult, Maria; Shao, Jonathan; Skantar, Andrea; Nemchinov, Lev G

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69) and susceptible (cv. Lahontan) alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with respect to resistance

  9. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

    Directory of Open Access Journals (Sweden)

    Olga A Postnikova

    Full Text Available Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp. are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69 and susceptible (cv. Lahontan alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with

  10. Unveiling the Biodiversity of Deep-Sea Nematodes through Metabarcoding: Are We Ready to Bypass the Classical Taxonomy?

    Science.gov (United States)

    Dell'Anno, Antonio; Carugati, Laura; Corinaldesi, Cinzia; Riccioni, Giulia; Danovaro, Roberto

    2015-01-01

    Nematodes inhabiting benthic deep-sea ecosystems account for >90% of the total metazoan abundances and they have been hypothesised to be hyper-diverse, but their biodiversity is still largely unknown. Metabarcoding could facilitate the census of biodiversity, especially for those tiny metazoans for which morphological identification is difficult. We compared, for the first time, different DNA extraction procedures based on the use of two commercial kits and a previously published laboratory protocol and tested their suitability for sequencing analyses of 18S rDNA of marine nematodes. We also investigated the reliability of Roche 454 sequencing analyses for assessing the biodiversity of deep-sea nematode assemblages previously morphologically identified. Finally, intra-genomic variation in 18S rRNA gene repeats was investigated by Illumina MiSeq in different deep-sea nematode morphospecies to assess the influence of polymorphisms on nematode biodiversity estimates. Our results indicate that the two commercial kits should be preferred for the molecular analysis of biodiversity of deep-sea nematodes since they consistently provide amplifiable DNA suitable for sequencing. We report that the morphological identification of deep-sea nematodes matches the results obtained by metabarcoding analysis only at the order-family level and that a large portion of Operational Clustered Taxonomic Units (OCTUs) was not assigned. We also show that independently from the cut-off criteria and bioinformatic pipelines used, the number of OCTUs largely exceeds the number of individuals and that 18S rRNA gene of different morpho-species of nematodes displayed intra-genomic polymorphisms. Our results indicate that metabarcoding is an important tool to explore the diversity of deep-sea nematodes, but still fails in identifying most of the species due to limited number of sequences deposited in the public databases, and in providing quantitative data on the species encountered. These aspects

  11. The Power of Omics to Identify Plant Susceptibility Factors and to Study Resistance to Root-knot Nematodes.

    Science.gov (United States)

    Cabrera, Javier; Barcala, Marta; Fenoll, Carmen; Escobar, Carolina

    2016-01-01

    Technology has contributed to the advances on the genomic, transcriptomic, metabolomic and proteomic analyses of the plant-root-knot nematode (RKN) interaction. Holistic approaches to obtain expression profiles, such as cDNA libraries, differential display, q-PCR, microarray hybridization, massive sequencing, etc., have increased our knowledge on the molecular aspects of the interaction and have triggered the development of biotechnological tools to control this plague. An important limitation, however, has been the difficulty of cross-comparative analysis of these data. The construction of a database, NEMATIC, compiling microarray data available in Arabidopsis of the interaction with plant endoparasitic nematodes facilitated the in silico analysis, but is not sufficient for the handling of 'omic' information of different plant species. Omics combined with cell isolation techniques have shed some light on the heterogeneous expression signatures of nematode induced gall tissues, i.e., plant defences are specifically inhibited in giant cells within the gall aiding the nematode for a successful establishment. The natural resistance against RKNs varies from an early hypersensitive reaction before the establishment of the nematode, to the arrest of gall growth. The molecular bases of these mechanisms, not fully understood yet, could disclose powerful targets for the development of biotechnology based tools for nematode control.

  12. Condensed tannins act against cattle nematodes

    DEFF Research Database (Denmark)

    Novobilský, Adam; Mueller-Harvey, Irene; Thamsborg, Stig Milan

    2011-01-01

    The use of natural plant anthelmintics was suggested as a possible alternative control of gastrointestinal nematodes (GIN) in ruminants. Direct anthelmintic effects of tannin-containing plants have already been shown in sheep and goat GIN. These anthelmintic properties are mainly associated...... concentration for 50% inhibition), was the most effective against both nematodes, followed by O. viciifolia and L. corniculatus. The effect of CT extracts upon larval feeding behaviour correlates with CT content and procyanidin/prodelphidin ratio. Larval exsheathment of C. oncophora and O. ostertagi L3 larvae...... extracts. Our results, therefore, indicated that tannin-containing plants could act against cattle nematodes....

  13. [Nematodes of humans in the Primorye Territory].

    Science.gov (United States)

    Ermolenko, A V; Rumiantseva, E E; Bartkova, A D; Voronok, V M; Poliakova, L F

    2013-01-01

    Nematodes occupy the top in the general pattern of human parasitic diseases in the Primorye Territory. In the south of the Far East, there are a total of 28 nematode species that can parasitize man. However, the authors have identified only 8 nematode-induced diseases, such as ascariasis, enterobiasis, toxocariasis, trichocephaliasis, anisakiasis, trichinosis, dirofilariasis, dioctophymosis. The latter has been found only once in the 1920s. According to official statistical data, the proportion of ascariasis and enterobiasis accounted for 43.8 and 53.5% of the total number of helminthiases, respectively.

  14. IMPORTANT NEMATODE INFECTIONS IN INDONESIA

    Directory of Open Access Journals (Sweden)

    Sri Oemijati

    2012-09-01

    Full Text Available At least 13 species of intestinal nematodes and 4 species of blood and tissue nematodes have been reported infecting man in Indonesia. Five species of intestinal nematodes are very common and highly prevalent, especially in the rural areas and slums of the big cities. Those species are Ascaris lumbricoides, Necator americanus, Ancylostoma duodenale, Trichuris trichiura and Oxyuris vermicularis, while Strongyloides stercoralis is disappearing. The prevalence of the soil transmitted helminths differs from place to place, depending on many factors such as the type of soil, human behaviour etc. Three species of lymph dwelling filarial worms are known to be endemic, the urban Wuchereria bancrofti is low endemic in Jakarta and a few other cities along the north coast of Java, with Culex incriminated as vector, high endemicity is found in Irian Jaya, where Anopheline mosquitoes act as vectors. Brugia malayi is widely distributed and is still highly endemic in many areas. The zoonotic type is mainly endemic in swampy areas, and has many species of Mansonia mosquitoes as vectors. B.timori so far has been found only in the south eastern part of the archipelago and has Anopheles barbirostris as vector. Human infections with animal parasites have been diagnosed properly only when adult stages were found either in autopsies or removed tissues. Cases of infections with A. caninum, A.braziliense, A.ceylanicum, Trichostrongylus colubriformis, T.axei and Oesophagostomum apiostomum have been desribed from autopsies, while infections with Gnathostoma spiningerum have been reported from removed tissues. Infections with the larval stages such as VLM, eosinophylic meningitis, occult filanasis and other could only be suspected, since the diagnosis was extremely difficult and based on the finding and identification of the parasite. Many cases of creeping eruption which might be caused by the larval stages of A.caninum and A.braziliense and Strongyloides stercoralis

  15. Development of Anthelmintic Resistance Detection Methods of Gastrointestinal Nematodes on Livestock

    Directory of Open Access Journals (Sweden)

    Dyah Haryuningtyas

    2008-03-01

    Full Text Available The intensive usage of anthelmintic in most of farms led to resistances of livestock gastrointestinal nematodes against anthelmintic. Many reports of resistance that increased every year happen following the continuing helminth control programmes. The succesful implementation of helminth control programmes that designed to minimize the development of resistance in nematode populations depends on the availability of effective and sensitive method for its detection and monitoring. A variety of in vivo and in vitro tests have been developed for detecting nematode population resistance to the main anthelmintic groups. This paper will discuss the development of detection method of anthelmintic resistance based on conventional and molecular approach according to their strengths and weakness.

  16. Investigation of Nematode Diversity using Scanning Electron Microscopy and Fluorescent Microscopy

    Science.gov (United States)

    Seacor, Taylor; Howell, Carina

    2013-03-01

    Nematode worms account for the vast majority of the animals in the biosphere. They are colossally important to global public health as parasites, and to agriculture both as pests and as beneficial inhabitants of healthy soil. Amphid neurons are the anterior chemosensory neurons in nematodes, mediating critical behaviors including chemotaxis and mating. We are examining the cellular morphology and external anatomy of amphid neurons, using fluorescence microscopy and scanning electron microscopy, respectively, of a wide range of soil nematodes isolated in the wild. We use both classical systematics (e.g. diagnostic keys) and molecular markers (e.g. ribosomal RNA) to classify these wild isolates. Our ultimate aim is to build a detailed anatomical database in order to dissect genetic pathways of neuronal development and function across phylogeny and ecology. Research supported by NSF grants 092304, 0806660, 1058829 and Lock Haven University FPDC grants

  17. Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network

    Directory of Open Access Journals (Sweden)

    David A. Fitzpatrick

    2012-01-01

    Full Text Available The relationship between biological network architectures and evolution is unclear. Within the phylum nematoda olfaction represents a critical survival tool. For nematodes, olfaction contributes to multiple processes including the finding of food, hosts, and reproductive partners, making developmental decisions, and evading predators. Here we examine a dynamic nematode odor genetic network to investigate how divergence, diversity, and contribution are shaped by network topology. Our findings describe connectivity frameworks and characteristics that correlate with molecular evolution and contribution across the olfactory network. Our data helps guide the development of a robust evolutionary description of the nematode odor network that may eventually aid in the prediction of interactive and functional qualities of novel nodes.

  18. Findings of Entomopathogenic Nematodes (Rhabditida, Steinernematidae in Nature Reserves in Ukraine

    Directory of Open Access Journals (Sweden)

    Yakovlev Ye. B.

    2014-07-01

    Full Text Available Findings of Entomopathogenic Nematodes (Rhabditida, Steinernematidae in Nature Reserves in-Ukraine. Yakovlev, Ye. B., Kharchenko, V. A., Mráček, Z. — Five strains of Steinernema Travassos, 1927 were isolated by live baiting method with last instar larvae of Tenebrio molitor Linnaeus, 1758 from the reserves of some central and southern oblasts of Ukraine and the Crimean AR. Entomopathogenic nematodes were recovered from 5 of 196 (2.6 % soil samples collected in 2010. Isolated nematodes were identified using a combination of molecular (ITS1-5.8S-ITS2 rDNA gene sequencing and morphological techniques. Four of the isolated strains were recognized as S. feltiae (Filipjev, 1934, one as S. arenarium (Artyukhovsky, 1967.

  19. JCADM, new directions in Antarctic data management

    Science.gov (United States)

    Campbell, H.; de Bruin, T. F.

    2008-12-01

    The Joint Committee on Antarctic Data Management (JCADM) was established by the Scientific Committee on Antarctic Research (SCAR) and the Council of Managers of National Antarctic Programs (COMNAP), to assist in the fulfilment of the data management obligations imposed by the Antarctic Treaty (section III.1.c): "Scientific observations and results from Antarctica shall be exchanged and made freely available." JCADM comprises representatives of the National Antarctic Data Centres or national points of contact. Currently 31 nations around the world are represented in JCADM. So far, JCADM has been focussing on the coordination of the Antarctic Master Directory (AMD), the internationally accessible, web-based, searchable record of Antarctic and Southern Ocean data set descriptions. The AMD is directly integrated into the international Global Change Master Directory (GCMD) to help further merge Antarctic science into global science. The AMD is a resource for scientists to advertise the data they have collected and to search for data they may need. Currently, JCADM is in a transition phase, moving forward to provide data access. Existing systems and web services technology will be used as much as possible, to increase efficiency and prevent 're-inventing the wheel' This poster will give an overview of this process, the current status and the expected results.

  20. Impact of climate change on Antarctic krill

    NARCIS (Netherlands)

    Florentino De Souza Silva, A.P.; Atkinson, A.; Kawaguchi, S.; Bravo Rebolledo, E.; Franeker, van J.A.

    2012-01-01

    Antarctic krill Euphausia superba (hereafter ‘krill’) occur in regions undergoing rapid environmental change, particularly loss of winter sea ice. During recent years, harvesting of krill has increased, possibly enhancing stress on krill and Antarctic ecosystems. Here we review the overall impact of

  1. Sensitive and reliable detection of grapevine fanleaf virus in a single Xiphinema index nematode vector.

    Science.gov (United States)

    Demangeat, Gérard; Komar, Véronique; Cornuet, Pascal; Esmenjaud, Daniel; Fuchs, Marc

    2004-12-01

    Grapevine fanleaf virus (GFLV) is specifically transmitted from plant to plant by the ectoparasitic nematode Xiphinema index. A sensitive and reliable procedure was developed to readily detect GFLV in a single viruliferous X. index, regardless of the nematode origin, i.e. greenhouse rearings or vineyard soils. The assay is based on bead milling to disrupt nematodes extracted from soil samples, solid-phase extraction of total nematode RNAs, and amplification of a 555bp fragment of the coat protein (CP) gene by reverse transcription-polymerase chain reaction with two primers designed from conserved sequences. This procedure is sensitive since the CP gene fragment is amplified from an artificial sample consisting of one viruliferous nematode mixed with 3000 aviruliferous individuals. In addition, StyI RFLP analysis of the CP amplicon enables the GFLV isolate carried by a single viruliferous X. index to be characterized. This GFLV detection assay opens new avenues for epidemiological studies and for molecular investigations on the mechanism of X. index-mediated GFLV transmission.

  2. Serine/threonine phosphatases in socioeconomically important parasitic nematodes--prospects as novel drug targets?

    Science.gov (United States)

    Campbell, Bronwyn E; Hofmann, Andreas; McCluskey, Adam; Gasser, Robin B

    2011-01-01

    Little is known about the fundamental biology of parasitic nematodes (=roundworms) that cause serious diseases, affecting literally billions of animals and humans worldwide. Unlocking the biology of these neglected pathogens using modern technologies will yield crucial and profound knowledge of their molecular biology, and could lead to new treatment and control strategies. Supported by studies in the free-living nematode, Caenorhabditis elegans, some recent investigations have provided improved insights into selected protein phosphatases (PPs) of economically important parasitic nematodes (Strongylida). In the present article, we review this progress and assess the potential of serine/threonine phosphatase (STP) genes and/or their products as targets for new nematocidal drugs. Current information indicates that some small molecules, known to specifically inhibit PPs, might be developed as nematocides. For instance, some cantharidin analogues are known to display exquisite PP-inhibitor activity, which indicates that some of them could be designed and tailored to specifically inhibit selected STPs of nematodes. This information provides prospects for the discovery of an entirely novel class of nematocides, which is of paramount importance, given the serious problems linked to anthelmintic resistance in parasitic nematode populations of livestock, and has the potential to lead to significant biotechnological outcomes.

  3. Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans.

    Directory of Open Access Journals (Sweden)

    Yong Yin

    Full Text Available BACKGROUND: The nematode intestine is a major organ responsible for nutrient digestion and absorption; it is also involved in many other processes, such as reproduction, innate immunity, stress responses, and aging. The importance of the intestine as a target for the control of parasitic nematodes has been demonstrated. However, the lack of detailed knowledge on the molecular and cellular functions of the intestine and the level of its conservation across nematodes has impeded breakthroughs in this application. METHODS AND FINDINGS: As part of an extensive effort to investigate various transcribed genomes from Ascaris suum and Haemonchus contortus, we generated a large collection of intestinal sequences from parasitic nematodes by identifying 3,121 A. suum and 1,755 H. contortus genes expressed in the adult intestine through the generation of expressed sequence tags. Cross-species comparisons to the intestine of the free-living C. elegans revealed substantial diversification in the adult intestinal transcriptomes among these species, suggesting lineage- or species-specific adaptations during nematode evolution. In contrast, significant conservation of the intestinal gene repertories was also evident, despite the evolutionary distance of approximately 350 million years separating them. A group of 241 intestinal protein families (IntFam-241, each containing members from all three species, was identified based on sequence similarities. These conserved proteins accounted for approximately 20% of the sampled intestinal transcriptomes from the three nematodes and are proposed to represent conserved core functions in the nematode intestine. Functional characterizations of the IntFam-241 suggested important roles in molecular functions such as protein kinases and proteases, and biological pathways of carbohydrate metabolism, energy metabolism, and translation. Conservation in the core protein families was further explored by extrapolating observable RNA

  4. On the use of high-throughput sequencing for the study of cyanobacterial diversity in Antarctic aquatic mats.

    Science.gov (United States)

    Pessi, Igor Stelmach; Maalouf, Pedro De Carvalho; Laughinghouse, Haywood Dail; Baurain, Denis; Wilmotte, Annick

    2016-06-01

    The study of Antarctic cyanobacterial diversity has been mostly limited to morphological identification and traditional molecular techniques. High-throughput sequencing (HTS) allows a much better understanding of microbial distribution in the environment, but its application is hampered by several methodological and analytical challenges. In this work, we explored the use of HTS as a tool for the study of cyanobacterial diversity in Antarctic aquatic mats. Our results highlight the importance of using artificial communities to validate the parameters of the bioinformatics procedure used to analyze natural communities, since pipeline-dependent biases had a strong effect on the observed community structures. Analysis of microbial mats from five Antarctic lakes and an aquatic biofilm from the Sub-Antarctic showed that HTS is a valuable tool for the assessment of cyanobacterial diversity. The majority of the operational taxonomic units retrieved were related to filamentous taxa such as Leptolyngbya and Phormidium, which are common genera in Antarctic lacustrine microbial mats. However, other phylotypes related to different taxa such as Geitlerinema, Pseudanabaena, Synechococcus, Chamaesiphon, Calothrix, and Coleodesmium were also found. Results revealed a much higher diversity than what had been reported using traditional methods and also highlighted remarkable differences between the cyanobacterial communities of the studied lakes. The aquatic biofilm from the Sub-Antarctic had a distinct cyanobacterial community from the Antarctic lakes, which in turn displayed a salinity-dependent community structure at the phylotype level.

  5. Fungi associated with free-living soil nematodes in Turkey

    Directory of Open Access Journals (Sweden)

    Karabörklü Salih

    2015-01-01

    Full Text Available Free-living soil nematodes have successfully adapted world-wide to nearly all soil types from the highest to the lowest of elevations. In the current study, nematodes were isolated from soil samples and fungi associated with these free-living soil nematodes were determined. Large subunit (LSU rDNAs of nematode-associated fungi were amplified and sequenced to construct phylogenetic trees. Nematode-associated fungi were observed in six nematode strains belonging to Acrobeloides, Steinernema and Cephalobus genera in different habitats. Malassezia and Cladosporium fungal strains indicated an association with Acrobeloides and Cephalobus nematodes, while Alternaria strains demonstrated an association with the Steinernema strain. Interactions between fungi and free-living nematodes in soil are discussed. We suggest that nematodes act as vectors for fungi.

  6. Conserving and enhancing biological control of nematodes.

    Science.gov (United States)

    Timper, Patricia

    2014-06-01

    Conservation biological control is the modification of the environment or existing practices to protect and enhance antagonistic organisms to reduce damage from pests. This approach to biological control has received insufficient attention compared with inundative applications of microbial antagonists to control nematodes. This review provides examples of how production practices can enhance or diminish biological control of plant-parasitic nematodes and other soilborne pests. Antagonists of nematodes can be enhanced by providing supplementary food sources such as occurs when organic amendments are applied to soil. However, some organic amendments (e.g., manures and plants containing allelopathic compounds) can also be detrimental to nematode antagonists. Plant species and genotype can strongly influence the outcome of biological control. For instance, the susceptibility of the plant to the nematode can determine the effectiveness of control; good hosts will require greater levels of suppression than poor hosts. Plant genotype can also influence the degree of rhizosphere colonization and antibiotic production by antagonists, as well the expression of induced resistance by plants. Production practices such as crop rotation, fallow periods, tillage, and pesticide applications can directly disrupt populations of antagonistic organisms. These practices can also indirectly affect antagonists by reducing their primary nematode host. One of the challenges of conservation biological control is that practices intended to protect or enhance suppression of nematodes may not be effective in all field sites because they are dependent on indigenous antagonists. Ultimately, indicators will need to be identified, such as the presence of particular antagonists, which can guide decisions on where it is practical to use conservation biological control. Antagonists can also be applied to field sites in conjunction with conservation practices to improve the consistency, efficacy, and

  7. Ascaroside Signaling is Widely Conserved Among Nematodes

    OpenAIRE

    Choe, Andrea; von Reuss, Stephan H.; Kogan, Dima; Robin B Gasser; Platzer, Edward G.; Schroeder, Frank C.; Paul W. Sternberg

    2012-01-01

    Background: Nematodes are among the most successful animals on earth and include important human pathogens, yet little is known about nematode pheromone systems. A group of small molecules called ascarosides has been found to mediate mate finding, aggregation, and developmental diapause in Caenorhabditis elegans, but it is unknown whether ascaroside signaling exists outside of the genus Caenorhabditis. Results: To determine whether ascarosides are used as signaling molecules by other nemat...

  8. Nematode parasites of animals are more prone to develop xenobiotic resistance than nematode parasites of plants

    Directory of Open Access Journals (Sweden)

    Silvestre A.

    2004-06-01

    Full Text Available In this paper, we concentrate on a comparison of plant and animal-parasitic nematodes, to gain insight into the factors that influence the acquisition of the drug resistance by nematodes. Comparing nematode parasite of domestic animals and cultivated plants, it appears that drug resistance threatens only domestic animal production. Does the paucity of report on nematicide field resistance reflect reality or, is nematicide resistance bypassed by other management practices, specific to cultivated plants (i.e. agricultural control ? First, it seems that selection pressure by treatments in plants is not as efficient as selection pressure in ruminants. Agronomic practices (i.e. sanitation, early planting, usage of nematodes resistant cultivar and crop rotation are frequently used to control parasitic-plant nematodes. Although the efficiency of such measures is generally moderate to high, integrated approaches are developing successfully in parasitic-plant nematode models. Secondly, the majority of anthelmintic resistance cases recorded in animal-parasitic nematodes concern drug families that are not used in plant-parasitic nematodes control (i.e. benzimidazoles, avermectines and levamisole. Thirdly, particular life traits of parasitic-plant nematodes (low to moderate fecundity and reproductive strategy are expected to reduce probability of appearance and transmission of drug resistance genes. It has been demonstrated that, for a large number of nematodes such as Meloidogyne spp., the mode of reproduction by mitotic parthenogenesis reduced genetic diversity of populations which may prevent a rapid drug resistance development. In conclusion, anthelmintic resistance develops in nematode parasite of animals as a consequence of an efficient selection pressure. Early detection of anthelmintic resistance is then crucial : it is not possible to avoid it, but only to delay its development in farm animal industry.

  9. Caracterização molecular de populações do nematóide-de-cisto-da-soja com diferentes índices de parasitismo na cultivar Hartwig Molecular characterization of soybean cyst nematode populations with different parasitism index to the Hartwig cultivar

    Directory of Open Access Journals (Sweden)

    Ricardo Vilela Abdelnoor

    2001-02-01

    Full Text Available Recentemente, foi descoberta uma raça do nematóide-de-cisto-da-soja (NCS; Heterodera glycines que apresentou a capacidade de quebrar a resistência da cultivar Hartwig, até então considerada resistente a todas as raças conhecidas do nematóide. Essa população foi coletada no Município de Sorriso, Estado do Mato Grosso, e foi caracterizada como raça 4. Para verificar a diversidade genética entre esta e outras populações pertencentes às raças 4 e 9, foi feita uma caracterização molecular pela técnica de marcadores moleculares RAPD. Foram utilizadas nove populações do NCS, das quais quatro apresentavam a capacidade de parasitar 'Hartwig'. Foi verificado que as populações capazes de parasitar 'Hartwig' foram bastante diferentes das demais. Por meio de análise de agrupamento, com base nas distâncias genéticas encontradas, foram obtidos três grupos: o primeiro, constituído por indivíduos classificados como raça 4, mas que não parasitam 'Hartwig'; o segundo, constituído por quatro populações capazes de parasitar 'Hartwig', e o terceiro, por apenas uma população, classificado como raça 9, e que também não parasita 'Hartwig'. Este estudo confirmou que a população de NCS, encontrada em Sorriso, é geneticamente distinta das demais populações da raça 4 encontradas e constitui uma nova raça, denominada 4+.Recently, a new race of soybean cyst nematode (SCN (Heterodera glycines was discovered, which breaks the resistance of cultivar Hartwig, resistant to all known races of SCN. This population was obtained from soybean plants collected in the Sorriso county, state of Mato Grosso, Brazil, and is characterized as race 4. To verify if this isolate was different from others classified as races 4 and 9, their genetic diversity was analyzed by using the RAPD technique. Nine populations of SCN were analyzed, and only four populations were able to parasitize soybean plants cultivar Hartwig. Based on this study, it was

  10. Technological advancements and their importance for nematode identification

    Science.gov (United States)

    Ahmed, Mohammed; Sapp, Melanie; Prior, Thomas; Karssen, Gerrit; Back, Matthew Alan

    2016-06-01

    Nematodes represent a species-rich and morphologically diverse group of metazoans known to inhabit both aquatic and terrestrial environments. Their role as biological indicators and as key players in nutrient cycling has been well documented. Some plant-parasitic species are also known to cause significant losses to crop production. In spite of this, there still exists a huge gap in our knowledge of their diversity due to the enormity of time and expertise often involved in characterising species using phenotypic features. Molecular methodology provides useful means of complementing the limited number of reliable diagnostic characters available for morphology-based identification. We discuss herein some of the limitations of traditional taxonomy and how molecular methodologies, especially the use of high-throughput sequencing, have assisted in carrying out large-scale nematode community studies and characterisation of phytonematodes through rapid identification of multiple taxa. We also provide brief descriptions of some the current and almost-outdated high-throughput sequencing platforms and their applications in both plant nematology and soil ecology.

  11. 小麦孢囊线虫江苏群体的形态学与分子特征鉴定%Morphological and Molecular Identification of Cereal Cyst Nematodes on Wheat from Jiangsu Province of China

    Institute of Scientific and Technical Information of China (English)

    王暄; 乐秀虎; 宋志强; 向桂林; 林宇; 李红梅

    2013-01-01

    [Objective] The objective of this study is to understand the species of cereal cyst nematodes (CCN) from Jiangsu Province and their genetic relationships,and to provide valuable information for screening resistant wheat cultivars,plant breeding and integrated control of the disease.[Method] The morphology and morphometrics for cyst,vulval cone and second stage juvenile were characterized for 13 typical Jiangsu populations.The ITS regions of ribosomal DNA were amplified and the PCR products were sequenced.A phylogenetic tree was constructed based on the ITS sequences.[Result] The results demonstrated that 13 Jiangsu populations were similar with those described populations of Heterodera avenae by comparing the morphological characters and morphometric data.The phylogenetic tree revealed that the Jiangsu populations were grouped with domestic and abroad populations of H.avenae into a big branch,which could clearly separate Chinese populations from foreign populations.[Conclusion] All the studied CCN populations from Jiangsu Province were identified as H.avenae.The variations in morphological characters and ITS sequences among different Jiangsu populations were very small.The status ofH.filipjevi in Jiangsu Province is unknown.%[目的]明确小麦禾谷类作物孢囊线虫(cereal cyst nematodes,CCN)江苏群体的种类组成及群体间遗传变异情况,为抗病品种的选育、利用以及病害综合防治提供依据.[方法]对江苏省的13个代表性CCN群体进行孢囊、阴门锥和2龄幼虫的形态观察和形态测计并与相似种进行比较;PCR扩增上述群体的rDNA-ITS区并克隆测序,构建基于ITS序列的系统发育进化树.[结果]通过形态观察和形态测计值的比较,所测定的江苏群体均与已报道的禾谷孢囊线虫(Heterodera avenae)中国群体的测计值相接近;系统进化关系分析显示CCN江苏群体、国内其它地区以及国外禾谷孢囊线虫群体均处于同一大的进化分子簇,且

  12. An automated system for measuring parameters of nematode sinusoidal movement

    Directory of Open Access Journals (Sweden)

    Stirbl Robert C

    2005-02-01

    of the goa-1 gene, which encodes Go-alpha. We also demonstrate the use of this system for analyzing the effects of toxic agents. Concentration-response curves for the toxicants arsenite and aldicarb, both of which affect motility, were determined for wild-type and several mutant strains, identifying P-glycoprotein mutants as not significantly more sensitive to either compound, while cat-4 mutants are more sensitive to arsenite but not aldicarb. Conclusions Automated analysis of nematode movement facilitates a broad spectrum of experiments. Detailed genetic analysis of multiple alleles and of distinct genes in a regulatory network is now possible. These studies will facilitate quantitative modeling of C. elegans movement, as well as a comparison of gene function. Concentration-response curves will allow rigorous analysis of toxic agents as well as of pharmacological agents. This type of system thus represents a powerful analytical tool that can be readily coupled with the molecular genetics of nematodes.

  13. Hydrocarbon degradation by antarctic bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Cavanagh, J.A.E.; Nichols, P.D.; McMeekin, T.A.; Franzmann, P.D. [Univ. of Tasmania (Australia)] [and others

    1996-12-31

    Bacterial cultures obtained from sediment samples collected during a trial oil spill experiment conducted at Airport beach, Eastern Antarctica were selectively enriched for n-alkane-degrading and phenanthrenedegrading bacteria. Samples were collected from a control site and sites treated with different hydrocarbon mixtures - Special Antarctic blend (SAB), BP-Visco and orange roughy oils. One set of replicate sites was also treated with water from Organic Lake which had previously been shown to contain hydrocarbon-degrading bacteria. No viable bacteria were obtained from samples collected from sites treated with orange roughy oil. Extensive degradation of n-alkanes by enrichment cultures obtained from sites treated with SAB and BP-Visco occurred at both 25{degrees}C and 10{degrees}C. Extensive degradation of phenanthrene also occurred in enrichment cultures from these sites grown at 25{degrees}C. Concurrent increases of polar lipid in these cultures were also observed. The presence of 1,4-naphthaquinone and 1-naphthol during the growth of the cultures on phenanthrene is unusual and warrants further investigation of the mechanism of phenanthrene-degradation by these Antarctic bacteria.

  14. Wide interguild relationships among entomopathogenic and free-living nematodes in soil as measured by real time qPCR.

    Science.gov (United States)

    Campos-Herrera, Raquel; El-Borai, Fahiem E; Duncan, Larry W

    2012-10-01

    Entomopathogenic nematodes (EPNs) are promising biological control agents of soil-dwelling insect pests of many crops. These nematodes are ubiquitous in both natural and agricultural areas. Their efficacy against arthropods is affected directly and indirectly by food webs and edaphic conditions. It has long been suggested that a greater understanding of EPN ecology is needed to achieve consistent biological control by these nematodes and the development of molecular tools is helping to overcome obstacles to the study of cryptic organisms and complex interactions. Here we extend the repertoire of molecular tools to characterize soil food webs by describing primers/probe set to quantify certain free-living, bactivorous nematodes (FLBNs) that interact with EPNs in soil. Three FLBN isolates were recovered from soil baited with insect larvae. Morphological and molecular characterization confirmed their identities as Acrobeloides maximum (RT-1-R15C and RT-2-R25A) and Rhabditis rainai (PT-R14B). Laboratory experiments demonstrated the ability of these FLBNs to interfere with the development of Steinernema diaprepesi, Steinernema riobrave and Heterorhabditis indica parasitizing the weevil Diaprepes abbreviatus (Pfungi comprising Catenaria sp. and Monachrosporium gephyropagum that are natural enemies of EPNs. These relationships can be broadly interpreted as supporting Linford's hypothesis, i.e., decomposition of organic matter (here, insect cadavers) greatly increases bactivorous nematodes and their natural enemies.

  15. The complete mitochondrial genome of the Antarctic stalked jellyfish, Haliclystus antarcticus Pfeffer, 1889 (Staurozoa: Stauromedusae

    Directory of Open Access Journals (Sweden)

    Hsing-Hui Li

    2016-06-01

    Full Text Available In present study, the complete mitogenome sequence of the Antarctic stalked jellyfish, Haliclystus antarcticus Pfeffer (Staurozoa: Stauromedusae has been sequenced by next-generation sequencing method. The assembled mitogenome comprises of 15,766 bp including 13 protein coding genes, 7 transfer RNAs, and 2 ribosomal RNA genes. The overall base of Antarctic stalked jellyfish constitutes of 26.5% for A, 19.6% for C, 19.8% for G, 34.1% for T and show 90% identity to Sessile Jelly, Haliclystus sanjuanensis, in the northeastern Pacific Ocean. The complete mitogenome of the Antarctic stalked jellyfish, contributes fundamental and significant DNA molecular data for further phylogeography and evolutionary analysis for seahorse phylogeny. The complete sequence was deposited in DBBJ/EMBL/GenBank under accession number KU947038.

  16. The complete mitochondrial genome of the Antarctic stalked jellyfish, Haliclystus antarcticus Pfeffer, 1889 (Staurozoa: Stauromedusae).

    Science.gov (United States)

    Li, Hsing-Hui; Sung, Ping-Jyun; Ho, Hsuan-Ching

    2016-06-01

    In present study, the complete mitogenome sequence of the Antarctic stalked jellyfish, Haliclystus antarcticus Pfeffer (Staurozoa: Stauromedusae) has been sequenced by next-generation sequencing method. The assembled mitogenome comprises of 15,766 bp including 13 protein coding genes, 7 transfer RNAs, and 2 ribosomal RNA genes. The overall base of Antarctic stalked jellyfish constitutes of 26.5% for A, 19.6% for C, 19.8% for G, 34.1% for T and show 90% identity to Sessile Jelly, Haliclystus sanjuanensis, in the northeastern Pacific Ocean. The complete mitogenome of the Antarctic stalked jellyfish, contributes fundamental and significant DNA molecular data for further phylogeography and evolutionary analysis for seahorse phylogeny. The complete sequence was deposited in DBBJ/EMBL/GenBank under accession number KU947038.

  17. Underwater Optics in Sub-Antarctic and Antarctic Coastal Ecosystems.

    Science.gov (United States)

    Huovinen, Pirjo; Ramírez, Jaime; Gómez, Iván

    2016-01-01

    Understanding underwater optics in natural waters is essential in evaluating aquatic primary production and risk of UV exposure in aquatic habitats. Changing environmental conditions related with global climate change, which imply potential contrasting changes in underwater light climate further emphasize the need to gain insights into patterns related with underwater optics for more accurate future predictions. The present study evaluated penetration of solar radiation in six sub-Antarctic estuaries and fjords in Chilean North Patagonian region (39-44°S) and in an Antarctic bay (62°S). Based on vertical diffuse attenuation coefficients (Kd), derived from measurements with a submersible multichannel radiometer, average summer UV penetration depth (z1%) in these water bodies ranged 2-11 m for UV-B (313 nm), 4-27 m for UV-A (395 nm), and 7-30 m for PAR (euphotic zone). UV attenuation was strongest in the shallow Quempillén estuary, while Fildes Bay (Antarctica) exhibited the highest transparency. Optically non-homogeneous water layers and seasonal variation in transparency (lower in winter) characterized Comau Fjord and Puyuhuapi Channel. In general, multivariate analysis based on Kd values of UV and PAR wavelengths discriminated strongly Quempillén estuary and Puyuhuapi Channel from other study sites. Spatial (horizontal) variation within the estuary of Valdivia river reflected stronger attenuation in zones receiving river impact, while within Fildes Bay a lower spatial variation in water transparency could in general be related to closeness of glaciers, likely due to increased turbidity through ice-driven processes. Higher transparency and deeper UV-B penetration in proportion to UV-A/visible wavelengths observed in Fildes Bay suggests a higher risk for Antarctic ecosystems reflected by e.g. altered UV-B damage vs. photorepair under UV-A/PAR. Considering that damage repair processes often slow down under cool temperatures, adverse UV impact could be further

  18. Microbial ecology of Antarctic aquatic systems.

    Science.gov (United States)

    Cavicchioli, Ricardo

    2015-11-01

    The Earth's biosphere is dominated by cold environments, and the cold biosphere is dominated by microorganisms. Microorganisms in cold Southern Ocean waters are recognized for having crucial roles in global biogeochemical cycles, including carbon sequestration, whereas microorganisms in other Antarctic aquatic biomes are not as well understood. In this Review, I consider what has been learned about Antarctic aquatic microbial ecology from 'omic' studies. I assess the factors that shape the biogeography of Antarctic microorganisms, reflect on some of the unusual biogeochemical cycles that they are associated with and discuss the important roles that viruses have in controlling ecosystem function.

  19. The application of DNA sequence data for the identification of benthic nematodes from the North Sea

    Science.gov (United States)

    Vogt, Philipp; Miljutina, Maria; Raupach, Michael J.

    2014-12-01

    Nematodes or roundworms represent one of the most diverse and dominant taxon in marine benthic habitats. Whereas a morphological identification of many species is challenging, the application of molecular markers represents a promising approach for species discrimination and identification. In this study, we used an integrative taxonomic approach, combining both molecular and morphological methods, to characterize nematodes of distinct sex and ontogenetic stages from three sampling sites of the North Sea. Morphospecies were discriminated after first visual determination, followed by a molecular analysis of the nuclear 28S rDNA: D2-D3 marker. By linking each sequence to a morphological voucher, discordant morphological identification was subjected to a so-called reverse taxonomic approach. Molecular operational taxonomic units (MOTUs) and morphospecies were compared for all of the three sampling sites to assess concordance of methodology. In total, 32 MOTUs and 26 morphospecies were assigned, of which 12 taxa were identified as described species. Both approaches showed high concordance in taxon assignment (84.4 %) except for a cluster comprising various Sabatieria species. Our study revealed the high potential of the analyzed fragment as a useful molecular marker for the identification of the North Sea nematodes and highlighted the applicability of this combined taxonomic approach in general.

  20. Interspecific nematode signals regulate dispersal behavior.

    Directory of Open Access Journals (Sweden)

    Fatma Kaplan

    Full Text Available BACKGROUND: Dispersal is an important nematode behavior. Upon crowding or food depletion, the free living bacteriovorus nematode Caenorhabditis elegans produces stress resistant dispersal larvae, called dauer, which are analogous to second stage juveniles (J2 of plant parasitic Meloidogyne spp. and infective juveniles (IJs of entomopathogenic nematodes (EPN, e.g., Steinernema feltiae. Regulation of dispersal behavior has not been thoroughly investigated for C. elegans or any other nematode species. Based on the fact that ascarosides regulate entry in dauer stage as well as multiple behaviors in C. elegans adults including mating, avoidance and aggregation, we hypothesized that ascarosides might also be involved in regulation of dispersal behavior in C. elegans and for other nematodes such as IJ of phylogenetically related EPNs. METHODOLOGY/PRINCIPAL FINDINGS: Liquid chromatography-mass spectrometry analysis of C. elegans dauer conditioned media, which shows strong dispersing activity, revealed four known ascarosides (ascr#2, ascr#3, ascr#8, icas#9. A synthetic blend of these ascarosides at physiologically relevant concentrations dispersed C. elegans dauer in the presence of food and also caused dispersion of IJs of S. feltiae and J2s of plant parasitic Meloidogyne spp. Assay guided fractionation revealed structural analogs as major active components of the S. feltiae (ascr#9 and C. elegans (ascr#2 dispersal blends. Further analysis revealed ascr#9 in all Steinernema spp. and Heterorhabditis spp. infected insect host cadavers. CONCLUSIONS/SIGNIFICANCE: Ascaroside blends represent evolutionarily conserved, fundamentally important communication systems for nematodes from diverse habitats, and thus may provide sustainable means for control of parasitic nematodes.

  1. Combinatorial chemistry in nematodes: modular assembly of primary metabolism-derived building blocks.

    Science.gov (United States)

    von Reuss, Stephan H; Schroeder, Frank C

    2015-07-01

    The nematode Caenorhabditis elegans was the first animal to have its genome fully sequenced and has become an important model organism for biomedical research. However, like many other animal model systems, its metabolome remained largely uncharacterized, until recent investigations demonstrated the importance of small molecule-based signalling cascades for virtually every aspect of nematode biology. These studies have revealed that nematodes are amazingly skilled chemists: using simple building blocks from conserved primary metabolism and a strategy of modular assembly, C. elegans and other nematode species create complex molecular architectures to regulate their development and behaviour. These nematode-derived modular metabolites (NDMMs) are based on the dideoxysugars ascarylose or paratose, which serve as scaffolds for attachment of moieties from lipid, amino acid, carbohydrate, citrate, and nucleoside metabolism. Mutant screens and comparative metabolomics based on NMR spectroscopy and MS have so-far revealed several 100 different ascarylose ("ascarosides") and a few paratose ("paratosides") derivatives, many of which represent potent signalling molecules that can be active at femtomolar levels, regulating development, behaviour, body shape, and many other life history traits. NDMM biosynthesis appears to be carefully regulated as assembly of different modules proceeds with very high specificity. Preliminary biosynthetic studies have confirmed the primary metabolism origin of some NDMM building blocks, whereas the mechanisms that underlie their highly specific assembly are not understood. Considering their functions and biosynthetic origin, NDMMs represent a new class of natural products that cannot easily be classified as "primary" or "secondary". We believe that the identification of new variants of primary metabolism-derived structures that serve important signalling functions in C. elegans and other nematodes provides a strong incentive for a comprehensive

  2. Mechanisms of invasive population establishment and spread of pinewood nematodes in China

    Institute of Scientific and Technical Information of China (English)

    XIE BingYan; CHENG XinYue; SHI Juan; ZHANG QingWen; DAI ShuMing; CHENG Fei Xue; LUO YouQing

    2009-01-01

    This paper summarizes the results of our study of the pinewood nematode (Bursaphelenchus xylophi-lus). By population genetic analysis, it was determined that there was no genetic bottle caused by the founder effect and genetic drift in the Chinese invasive population. Multiple invasions with large amounts of nematodes from different sources led to rich genetic diversity in the invasive population. Keeping high genetic diversity in the invasive process may be one of the genetic mechanisms in its successful invasion. By testing interspecies competition, it was shown that, with high fecundity and a strong competitive ability, B. Xylophilus outcompeted the native species B. Mucronatus in the natural ecosystem during the invasion process. Competitive displacement may be one of the ecological mechanisms of B. Xylophilus's invasion. In addition, an unequal interspecific hybridization with intro-gress was in favor of the invasive species which also accelerated the replacement of B. Mucronatus by B. Xylophilus. The structures, functions and evolutions of a few important genes that are closely related to the ecological adaptation of pinewood nematodes were studied to explore the molecular mechanism of its ecological adaptations. Further, the resistance and resilience mechanism of the pine ecosystem invaded by pinewood nematodes was also investigated. The results of these studies uncovered a por-tion of the genetic and ecological mechanisms of PWN's successful invasion and laid a foundation for further study to obtain a comprehensive interpretation of the mechanisms of the nematode invasion. The results also provided a scientific basis for effectively controlling the occurrence and spread of pine wilt disease which is caused by nematodes. Various aspects requiring further investigation are considered.

  3. Mechanisms of invasive population establishment and spread of pinewood nematodes in China

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    This paper summarizes the results of our study of the pinewood nematode(Bursaphelenchus xylophi-lus).By population genetic analysis,it was determined that there was no genetic bottle caused by the founder effect and genetic drift in the Chinese invasive population.Multiple invasions with large amounts of nematodes from different sources led to rich genetic diversity in the invasive population.Keeping high genetic diversity in the invasive process may be one of the genetic mechanisms in its successful invasion.By testing interspecies competition,it was shown that,with high fecundity and a strong competitive ability,B.xylophilus outcompeted the native species B.mucronatus in the natural ecosystem during the invasion process.Competitive displacement may be one of the ecological mechanisms of B.xylophilus’s invasion.In addition,an unequal interspecific hybridization with intro-gress was in favor of the invasive species which also accelerated the replacement of B.mucronatus by B.xylophilus.The structures,functions and evolutions of a few important genes that are closely related to the ecological adaptation of pinewood nematodes were studied to explore the molecular mechanism of its ecological adaptations.Further,the resistance and resilience mechanism of the pine ecosystem invaded by pinewood nematodes was also investigated.The results of these studies uncovered a portion of the genetic and ecological mechanisms of PWN’s successful invasion and laid a foundation for further study to obtain a comprehensive interpretation of the mechanisms of the nematode invasion.The results also provided a scientific basis for effectively controlling the occurrence and spread of pine wilt disease which is caused by nematodes.Various aspects requiring further investigation are considered.

  4. Serine Protease-mediated Host Invasion by the Parasitic Nematode Steinernema carpocapsae*

    Science.gov (United States)

    Toubarro, Duarte; Lucena-Robles, Miguel; Nascimento, Gisela; Santos, Romana; Montiel, Rafael; Veríssimo, Paula; Pires, Euclides; Faro, Carlos; Coelho, Ana V.; Simões, Nelson

    2010-01-01

    Steinernema carpocapsae is an insect parasitic nematode used in biological control, which infects insects penetrating by mouth and anus and invading the hemocoelium through the midgut wall. Invasion has been described as a key factor in nematode virulence and suggested to be mediated by proteases. A serine protease cDNA from the parasitic stage was sequenced (sc-sp-1); the recombinant protein was produced in an Escherichia coli system, and a native protein was purified from the secreted products. Both proteins were confirmed by mass spectrometry to be encoded by the sc-sp-1 gene. Sc-SP-1 has a pI of 8.7, a molecular mass of 27.3 kDa, a catalytic efficiency of 22.2 × 104 s−1 m−1 against N-succinyl-Ala-Ala-Pro-Phe-pNA, and is inhibited by chymostatin (IC 0.07) and PMSF (IC 0.73). Sc-SP-1 belongs to the chymotrypsin family, based on sequence and biochemical analysis. Only the nematode parasitic stage expressed sc-sp-1. These nematodes in the midgut lumen, prepared to invade the insect hemocoelium, expressed higher levels than those already in the hemocoelium. Moreover, parasitic nematode sense insect peritrophic membrane and hemolymph more quickly than they do other tissues, which initiates sc-sp-1 expression. Ex vivo, Sc-SP-1 was able to bind to insect midgut epithelium and to cause cell detachment from basal lamina. In vitro, Sc-SP-1 formed holes in an artificial membrane model (Matrigel), whereas Sc-SP-1 treated with PMSF did not, very likely because it hydrolyzes matrix glycoproteins. These findings highlight the S. carpocapsae-invasive process that is a key step in the parasitism thus opening new perspectives for improving nematode virulence to use in biological control. PMID:20656686

  5. Combinatorial chemistry in nematodes: modular assembly of primary metabolism-derived building blocks

    Science.gov (United States)

    2016-01-01

    The nematode Caenorhabditis elegans was the first animal to have its genome fully sequenced and has become an important model organism for biomedical research. However, like many other animal model systems, its metabolome remained largely uncharacterized, until recent investigations demonstrated the importance of small molecule-based signalling cascades for virtually every aspect of nematode biology. These studies have revealed that nematodes are amazingly skilled chemists: using simple building blocks from conserved primary metabolism and a strategy of modular assembly, C. elegans and other nematode species create complex molecular architectures to regulate their development and behaviour. These nematode-derived modular metabolites (NDMMs) are based on the dideoxysugars ascarylose or paratose, which serve as scaffolds for attachment of moieties from lipid, amino acid, carbohydrate, citrate, and nucleoside metabolism. Mutant screens and comparative metabolomics based on NMR spectroscopy and MS have so-far revealed several 100 different ascarylose (“ascarosides”) and a few paratose (“paratosides”) derivatives, many of which represent potent signalling molecules that can be active at femtomolar levels, regulating development, behaviour, body shape, and many other life history traits. NDMM biosynthesis appears to be carefully regulated as assembly of different modules proceeds with very high specificity. Preliminary biosynthetic studies have confirmed the primary metabolism origin of some NDMM building blocks, whereas the mechanisms that underlie their highly specific assembly are not understood. Considering their functions and biosynthetic origin, NDMMs represent a new class of natural products that cannot easily be classified as “primary” or “secondary”. We believe that the identification of new variants of primary metabolism-derived structures that serve important signalling functions in C. elegans and other nematodes provides a strong incentive for

  6. Role of nematodes as bioindicators in marine and freshwater habitats

    Digital Repository Service at National Institute of Oceanography (India)

    Geetanjali; Malhotra, S.K.; Ansari, Z.A; Chatterji, A

    Nematodes as bioindicator of water quality and ecosystem function has been emphasized. The behaviour of a nematode parasite Rostellascaris sp. As a biological tag and useful discriminant of habitats and in fishery exploitation has been reported...

  7. Two new species of soil nematodes from Manipur, India.

    Science.gov (United States)

    Chanu, Loukrakpam Bina; Meitei, N Mohilal; Shah, M Manjur

    2016-09-01

    Survey for soil nematodes associated with mulberry plants in valley districts of Manipur revealed the presence of two new species of soil nematodes of the genus Tylenchus sp. and Telotylenchus sp. The two new species are described and illustrated here.

  8. Abundance, viability and culturability of Antarctic bacteria

    Digital Repository Service at National Institute of Oceanography (India)

    LokaBharathi, P.A.; DeSouza, M.J.B.D.; Nair, S.; Chandramohan, D.

    The viability of total number of bacteria decide the mineralisation rate in any ecosystem and ultimately the fertility of the region. This study aims at establishing the extent of viability in the standing stock of the Antarctic bacterial population...

  9. Unveiling the Antarctic subglacial landscape.

    Science.gov (United States)

    Warner, Roland; Roberts, Jason

    2010-05-01

    Better knowledge of the subglacial landscape of Antarctica is vital to reducing uncertainties regarding prediction of the evolution of the ice sheet. These uncertainties are associated with bedrock geometry for ice sheet dynamics, including possible marine ice sheet instabilities and subglacial hydrological pathways (e.g. Wright et al., 2008). Major collaborative aerogeophysics surveys motivated by the International Polar Year (e.g. ICECAP and AGAP), and continuing large scale radar echo sounding campaigns (ICECAP and NASA Ice Bridge) are significantly improving the coverage. However, the vast size of Antarctica and logistic difficulties mean that data gaps persist, and ice thickness data remains spatially inhomogeneous. The physics governing large scale ice sheet flow enables ice thickness, and hence bedrock topography, to be inferred from knowledge of ice sheet surface topography and considerations of ice sheet mass balance, even in areas with sparse ice thickness measurements (Warner and Budd, 2000). We have developed a robust physically motivated interpolation scheme, based on these methods, and used it to generate a comprehensive map of Antarctic bedrock topography, using along-track ice thickness data assembled for the BEDMAP project (Lythe et al., 2001). This approach reduces ice thickness biases, compared to traditional inverse distance interpolation schemes which ignore the information available from considerations of ice sheet flow. In addition, the use of improved balance fluxes, calculated using a Lagrangian scheme, eliminates the grid orientation biases in ice fluxes associated with finite difference methods (Budd and Warner, 1996, Le Brocq et al., 2006). The present map was generated using a recent surface DEM (Bamber et al., 2009, Griggs and Bamber, 2009) and accumulation distribution (van de Berg et al., 2006). Comparing our results with recent high resolution regional surveys gives confidence that all major subglacial topographic features are

  10. Extended phenotype: nematodes turn ants into bird-dispersed fruits

    DEFF Research Database (Denmark)

    Hughes, D P; Kronauer, D J C; Boomsma, J J

    2008-01-01

    A recent study has discovered a novel extended phenotype of a nematode which alters its ant host to resemble ripe fruit. The infected ants are in turn eaten by frugivorous birds that disperse the nematode's eggs.......A recent study has discovered a novel extended phenotype of a nematode which alters its ant host to resemble ripe fruit. The infected ants are in turn eaten by frugivorous birds that disperse the nematode's eggs....

  11. Biocontrol: The Potential of Entomophilic Nematodes in Insect Management

    OpenAIRE

    Webster, John M.

    1980-01-01

    A review of the development of entomophilic nematology and a commentary on the potential of entomophilic nematodes in controlling insect pests. The paper considers some of the major contributions to our knowledge of entomophilic nematology; factors involved in insect pest management and how they are applicable to the use of nematodes; nematodes which are most promising as biological control agents; and problems to be solved to facilitate the use of entomophilic nematodes in insect management.

  12. Ross Ice Shelf, Antarctic Ice and Clouds

    Science.gov (United States)

    1991-01-01

    In this view of Antarctic ice and clouds, (56.5S, 152.0W), the Ross Ice Shelf of Antarctica is almost totally clear, showing stress cracks in the ice surface caused by wind and tidal drift. Clouds on the eastern edge of the picture are associated with an Antarctic cyclone. Winds stirred up these storms have been known to reach hurricane force.

  13. Microbial ecology and nematode control in natural ecosystems

    NARCIS (Netherlands)

    Costa, S.R.; Van der Putten, W.H.; Kerry, B.R.

    2011-01-01

    Plant-parasitic nematodes have traditionally been studied in agricultural systems, where they can be pests of importance on a wide range of crops. Nevertheless, nematode ecology in natural ecosystems is receiving increasing interest because of the role of nematodes in soil food webs, nutrient cyclin

  14. Site-Specific Detection and Management of Nematodes

    Science.gov (United States)

    Nematode distribution varies significantly throughout a field and is highly correlated to soil texture and other edaphic factors. Field-wide application results in nematicides being applied to areas without nematodes and the application of sub-effective levels in areas with high nematode densities. ...

  15. ENDOPARASITIC NEMATODES OF THE GENUS PRATYLENCHUS ON SOYBEAN

    OpenAIRE

    Ivana Majić

    2010-01-01

    The aims of the study were to determine susceptibility of soybean cultivars to root lesion nematodes (genus Pratylenchus), effect of intensity of arbuscular mycorrhizal fungi (AMF) colonization on penetration of endoparasitic nematodes in soybean roots, and trophic biodiversity of nematode community in soybean. In the period 2005 - 2007, investigations were conducted at experimental sites of Agricultural Institute Osijek. Seven soybean cultivars were included (Korana, ...

  16. Hormone signaling and phenotypic plasticity in nematode development and evolution.

    Science.gov (United States)

    Sommer, Ralf J; Ogawa, Akira

    2011-09-27

    Phenotypic plasticity refers to the ability of an organism to adopt different phenotypes depending on environmental conditions. In animals and plants, the progression of juvenile development and the formation of dormant stages are often associated with phenotypic plasticity, indicating the importance of phenotypic plasticity for life-history theory. Phenotypic plasticity has long been emphasized as a crucial principle in ecology and as facilitator of phenotypic evolution. In nematodes, several examples of phenotypic plasticity have been studied at the genetic and developmental level. In addition, the influence of different environmental factors has been investigated under laboratory conditions. These studies have provided detailed insight into the molecular basis of phenotypic plasticity and its ecological and evolutionary implications. Here, we review recent studies on the formation of dauer larvae in Caenorhabditis elegans, the evolution of nematode parasitism and the generation of a novel feeding trait in Pristionchus pacificus. These examples reveal a conserved and co-opted role of an endocrine signaling module involving the steroid hormone dafachronic acid. We will discuss how hormone signaling might facilitate life-history and morphological evolution.

  17. Differential Toxicities of Nickel Salts to the Nematode Caenorhabditis elegans.

    Science.gov (United States)

    Meyer, Dean; Birdsey, Jennifer M; Wendolowski, Mark A; Dobbin, Kevin K; Williams, Phillip L

    2016-08-01

    This study focused on assessing whether nickel (Ni) toxicity to the nematode Caenorhabditis elegans was affected by the molecular structure of the Ni salt used. Nematodes were exposed to seven Ni salts [Ni sulfate hexahydrate (NiSO4·6H2O), Ni chloride hexahydrate (NiCl2·6H2O), Ni acetate tetrahydrate (Ni(OCOCH3)2·4H2O), Ni nitrate hexahydrate (N2NiO6·6H2O), anhydrous Ni iodide (NiI2), Ni sulfamate hydrate (Ni(SO3NH2)2·H2O), and Ni fluoride tetrahydrate (NiF2·4H2O)] in an aquatic medium for 24 h, and lethality curves were generated and analyzed. Ni fluoride, Ni iodide, and Ni chloride were most toxic to C. elegans, followed by Ni nitrate, Ni sulfamate, Ni acetate, and Ni sulfate. The LC50 values of the halogen-containing salts were statistically different from the corresponding value of the least toxic salt, Ni sulfate. This finding is consistent with the expected high bioavailability of free Ni ions in halide solutions. We recommend that the halide salts be used in future Ni testing involving aquatic invertebrates.

  18. Nematode problems affecting agriculture in the Philippines.

    Science.gov (United States)

    Davide, R G

    1988-04-01

    Nematodes are considered major pests on most economic crops in the Philippines, particularly on banana, pineapple, citrus, tomato, ramie, and sugarcane. Radopholus similis is the most destructive nematode on banana, while Meloidogyne spp. are more serious on various vegetable crops such as tomato, okra, and celery and on fiber crops such as ramie. Tylenchulus semipenetrans is a problem on citrus and Rotylenchulus reniformis on pineapple and some legume crops. Hirschmanniella oryzae and Aphelenchoides besseyi are becoming serious on rice, and Pratylenchus zeae is affecting corn in some areas. Lately, Globodera rostochiensis has been causing serious damage on potato in the highlands. Control measures such as crop rotation, planting resistant varieties, chemical nematicide application, and biological control have been recommended to control these nematodes.

  19. Remote Sensing of Parasitic Nematodes in Plants

    Science.gov (United States)

    Lawrence, Gary W.; King, Roger; Kelley, Amber T.; Vickery, John

    2007-01-01

    A method and apparatus for remote sensing of parasitic nematodes in plants, now undergoing development, is based on measurement of visible and infrared spectral reflectances of fields where the plants are growing. Initial development efforts have been concentrated on detecting reniform nematodes (Rotylenchulus reniformis) in cotton plants, because of the economic importance of cotton crops. The apparatus includes a hand-held spectroradiometer. The readings taken by the radiometer are processed to extract spectral reflectances at sixteen wavelengths between 451 and 949 nm that, taken together, have been found to be indicative of the presence of Rotylenchulus reniformis. The intensities of the spectral reflectances are used to estimate the population density of the nematodes in an area from which readings were taken.

  20. ENDOPARASITIC NEMATODES OF THE GENUS PRATYLENCHUS ON SOYBEAN

    Directory of Open Access Journals (Sweden)

    Ivana Majić

    2010-12-01

    Full Text Available The aims of the study were to determine susceptibility of soybean cultivars to root lesion nematodes (genus Pratylenchus, effect of intensity of arbuscular mycorrhizal fungi (AMF colonization on penetration of endoparasitic nematodes in soybean roots, and trophic biodiversity of nematode community in soybean. In the period 2005 - 2007, investigations were conducted at experimental sites of Agricultural Institute Osijek. Seven soybean cultivars were included (Korana, Kuna, Anica, Una, Ika, Podravka 95 i Tisa. Soil and roots were sampled during four soybean growth stages. Nematode populations from soil and root samples were determined as well as reproductive index (RI of root lesion nematode population, and intensity of AMF root colonization. Ten ecological indexes were calculated in order to determine trophic biodiversity of nematode community: H’, λ, N1, N2, E1, E2, PPI, NCR, F/B, B+F/BP. Two Pratylenchus species were determined from the soil samples: P. thornei Sher & Allen 1953 and P. scribneri Steiner 1943. The results indicate negative effect of Pratylenchus spp. (extracted from soil samples on soybean yields for all but one cultivar (Una. However, increase in root lesion nematode population did not lead to linear decrease in plant biomass. Cultivars Ika, Podravka 95, Tisa and Una proved to be the best hosts to root lesion nematodes since these cultivars statistically differed among cultivars for the highest density of root lesion nematodes. Cultivar Una showed the least susceptibility to root lesion nematodes since it had the lowest RI and negative effects on yields were not determined. Due to high RI values and negative effect on soybean yields. Population densities of root lesion nematodes from soil samples, (compared to nematodes detected in roots are more reliable indicator of root lesion nematodes damaging potential. Since values of RI for Pratylenchus spp. in soil samples were determined as very high and soybean yields were

  1. The SCAR Standing Committee on Antarctic Data Management - new directions in access to Antarctic research data

    Science.gov (United States)

    de Bruin, T.

    2009-04-01

    The SCAR Standing Committee on Antarctic Data Management (SC-ADM) was established by the Scientific Committee on Antarctic Research (SCAR) and the Council of Managers of National Antarctic Programs (COMNAP), to assist in the fulfillment of the data management obligations imposed by the Antarctic Treaty (section III.1.c): "Scientific observations and results from Antarctica shall be exchanged and made freely available." SC-ADM comprises representatives of the National Antarctic Data Centres or national points of contact. Currently 31 nations around the world are represented in SC-ADM. So far, SC-ADM has been focussing on the coordination of the Antarctic Master Directory (AMD), the internationally accessible, web-based, searchable record of Antarctic and Southern Ocean data set descriptions. The AMD is directly integrated into the international Global Change Master Directory (GCMD) to help further merge Antarctic science into global science. The AMD is a resource for scientists to advertise the data they have collected and to search for data they may need. Currently, SC-ADM is in a transition phase, moving forward to provide data access. Existing systems and web services technology will be used as much as possible, to increase efficiency and prevent 're-inventing the wheel' This poster will give an overview of this process, the current status and the expected results.

  2. Can parasites halt the invader? Mermithid nematodes parasitizing the yellow-legged Asian hornet in France

    Directory of Open Access Journals (Sweden)

    Claire Villemant

    2015-05-01

    Full Text Available Since its introduction in France 10 years ago, the yellow-legged Asian bee-hawking hornet Vespa velutina has rapidly spread to neighboring countries (Spain, Portugal, Belgium, Italy, and Germany, becoming a new threat to beekeeping activities. While introduced species often leave behind natural enemies from their original home, which benefits them in their new environment, they can also suffer local recruitment of natural enemies. Three mermithid parasitic subadults were obtained from V. velutina adults in 2012, from two French localities. However, these were the only parasitic nematodes reported up to now in Europe, in spite of the huge numbers of nests destroyed each year and the recent examination of 33,000 adult hornets. This suggests that the infection of V. velutina by these nematodes is exceptional. Morphological criteria assigned the specimens to the genus Pheromermis and molecular data (18S sequences to the Mermithidae, due to the lack of Pheromermis spp. sequences in GenBank. The species is probably Pheromermis vesparum, a parasite of social wasps in Europe. This nematode is the second native enemy of Vespa velutina recorded in France, after a conopid fly whose larvae develop as internal parasitoids of adult wasps and bumblebees. In this paper, we provide arguments for the local origin of the nematode parasite and its limited impact on hornet colony survival. We also clarify why these parasites (mermithids and conopids most likely could not hamper the hornet invasion nor be used in biological control programs against this invasive species.

  3. Disease transmission in an extreme environment: nematode parasites infect reindeer during the Arctic winter.

    Science.gov (United States)

    Carlsson, Anja M; Justin Irvine, R; Wilson, Kenneth; Piertney, Stuart B; Halvorsen, Odd; Coulson, Stephen J; Stien, Audun; Albon, Steve D

    2012-07-01

    Parasitic nematodes are found in almost all wild vertebrate populations but few studies have investigated these host-parasite relationships in the wild. For parasites with free-living stages, the external environment has a major influence on life-history traits, and development and survival is generally low at sub-zero temperatures. For reindeer that inhabit the high Arctic archipelago of Svalbard, parasite transmission is expected to occur in the summer, due to the extreme environmental conditions and the reduced food intake by the host in winter. Here we show experimentally that, contrary to most parasitic nematodes, Marshallagia marshalli of Svalbard reindeer is transmitted during the Arctic winter. Winter transmission was demonstrated by removing parasites in the autumn, using a novel delayed-release anthelmintic bolus, and estimating re-infection rates in reindeer sampled in October, February and April. Larval stages of nematodes were identified using molecular tools, whereas adult stages were identified using microscopy. The abundance of M. marshalli adult worms and L4s increased significantly from October to April, indicating that reindeer were being infected with L3s from the pasture throughout the winter. To our knowledge, this study is the first to experimentally demonstrate over-winter transmission of a gastro-intestinal nematode parasite in a wild animal. Potential mechanisms associated with this unusual transmission strategy are discussed in light of our knowledge of the life-history traits of this parasite.

  4. Mining nematode genome data for novel drug targets.

    Science.gov (United States)

    Foster, Jeremy M; Zhang, Yinhua; Kumar, Sanjay; Carlow, Clotilde K S

    2005-03-01

    Expressed sequence tag projects have currently produced over 400 000 partial gene sequences from more than 30 nematode species and the full genomic sequences of selected nematodes are being determined. In addition, functional analyses in the model nematode Caenorhabditis elegans have addressed the role of almost all genes predicted by the genome sequence. This recent explosion in the amount of available nematode DNA sequences, coupled with new gene function data, provides an unprecedented opportunity to identify pre-validated drug targets through efficient mining of nematode genomic databases. This article describes the various information sources available and strategies that can expedite this process.

  5. [Nematode parasites of birds of the fauna in Tunisia].

    Science.gov (United States)

    Bernard, J

    1989-01-01

    330 birds of Tunisia were necropsied; they belong to 73 species among 29 families and 13 orders. We so collect 36 species of nematodes from 9 families. The relative importance of these is variable. The best represented are: Capillariidae (6 species), Spiruridae (6 species), Acuariidae (9 species) and Filariidae (6 species). The parasitism by nematodes is not uniform. Among the 330 birds autopsied only 51 were parasited by nematodes (15.45%) among 25 of the examined birds species (34.2%). Among these 25, sixteen (64%) presented only one species of parasitic nematode, six (24%) arboured two, (8%) three and only one, (partridges) presents six species of nematodes.

  6. Bacillus thuringiensis (Bt) toxin susceptibility and isolation of resistance mutants in the nematode Caenorhabditis elegans.

    OpenAIRE

    2000-01-01

    The protein toxins produced by Bacillus thuringiensis (Bt) are the most widely used natural insecticides in agriculture. Despite successful and extensive use of these toxins in transgenic crops, little is known about toxicity and resistance pathways in target insects since these organisms are not ideal for molecular genetic studies. To address this limitation and to investigate the potential use of these toxins to control parasitic nematodes, we are studying Bt toxin action and resistance in ...

  7. Essential oils as anti-nematode agents and their influence on in vitro nematode

    OpenAIRE

    Faria, Jorge Miguel Silva, 1983-

    2015-01-01

    Tese de doutoramento, Biologia (Biotecnologia), Universidade de Lisboa, Faculdade de Ciências, 2015 Parasitic nematodes are among the most production-limiting plant pests. In Europe, the recent introduction of Bursaphelenchus xylophilus [the pinewood nematode (PWN)] and some species of Meloidogyne has proved damaging to forest ecosystems and crop production. Due to the very laborious and environment-dependent nature of greenhouse or field assays, in vitro host with parasite co-cultures can...

  8. Controls and variability of solute and sedimentary fluxes in Antarctic and sub-Antarctic Environments

    Science.gov (United States)

    Zwolinski, Zbigniew

    2015-04-01

    The currently prepared SEDIBUD Book on "Source-to-Sink Fluxes in Undisturbed Cold Environments" (edited by Achim A. Beylich, John C. Dixon and Zbigniew Zwolinski and published by Cambridge University Press) is summarizing and synthesizing the achievements of the International Association of Geomorphologists` (I.A.G./A.I.G.) Working Group SEDIBUD (Sediment Budgets in Cold Environments), which has been active since 2005 (http://www.geomorph.org/wg/wgsb.html). The book comprises five parts. One of them is part about sub-Antarctic and Antarctic Environments. This part "Sub-Antarctic and Antarctic Environments" describes two different environments, namely oceanic and continental ones. Each part contains results of research on environmental drivers and rates of contemporary solute and sedimentary fluxes in selected sites. Apart from describing the environmental conditions of the whole continent of Antarctica and sub-Antarctic islands (Zb.Zwolinski, M.Kejna, A.N.Lastochkin, A.Zhirov, S.Boltramovich) this part of the book characterizes terrestrial polar oases free from multi-year ice and snow covers (Zb.Zwolinski). The detailed results of geoecological and sedimentological research come from different parts of Antarctica. Antarctic continental shelf (E.Isla) is an example of sub-Antarctic oceanic environment. South Shetlands, especially King George Island (Zb.Zwolinski, M.Kejna, G.Rachlewicz, I.Sobota, J.Szpikowski), is an example of sub-Antarctic terrestrial environment. Antarctic Peninsula (G.Vieira, M.Francelino, J.C.Fernandes) and surroundings of McMurdo Dry Valleys (W.B.Lyons, K.A.Welch, J.Levy, A.Fountain, D.McKnight) are examples of Antarctic continental environments. The key goals of the Antarctic and sub-Antarctic book chapters are following: (i) identify the main environmental drivers and rates of contemporary solute and sedimentary fluxes, and (ii) model possible effects of projected climate change on solute and sedimentary fluxes in cold climate environments

  9. Cryopreservation of roe deer abomasal nematodes for morphological identification.

    Science.gov (United States)

    Beraldo, Paola; Pascotto, Ernesto

    2014-02-01

    Conventional methods to preserve adult nematodes for taxonomic purposes involve the use of fixative or clearing solutions (alcohol, formaldehyde, AFA and lactophenol), which cause morphological alterations and are toxic. The aim of this study is to propose an alternative method based on glycerol-cryopreservation of nematodes for their subsequent identification. Adults of trichostrongylid nematodes from the abomasum of roe deer (Capreolus capreolus Linnaeus) were glycerol-cryopreserved and compared with those fixed in formaldehyde, fresh and frozen without cryoprotectans. Morphology, transparency and elasticity of the anterior and posterior portion of male nematodes were compared, especially the caudal cuticular bursa and genital accessories. The method presented is quick and easy to use, and the quality of nematode specimens is better than that of nematodes fixed by previously used fixatives. Moreover, glycerol cryopreserved nematodes can be stored for a long time at -20 degrees C in perfect condition and they could be suitable for further analyses, such as histological or ultrastructural examinations.

  10. Anisakid nematodes as possible markers to trace fish products

    Directory of Open Access Journals (Sweden)

    Vincenzo Ferrantelli

    2015-03-01

    Full Text Available In this work a total of 949 fish samples were analysed for the identification of nematode larvae belonging to the Anisakidae family. Biomolecular application for the identification of Anisakidae larvae can be an optimal instrument for the traceability of fish products, described on the Reg. EC 178/2002. Results confirm a correlation between geographical distribution of fishes and presence of specific Anisakid larvae. FAO 37 zone (Mediterranean sea showed a prevailing distribution of Anisakis pegreffii and a minimal presence of A. simplex s.s. in hybrid form with Anisakis pegreffii. FAO 27 zone showed a prevailing distribution of A. simplex s.s. in fish like Brosme (Brosme brosme and infestation prevalence of Pseudoterranova krabbei and P. decipiens s.s. in Gadus morhua. Obtained results validate the hypothesis that molecular biology methods for identifying Anisakidae larvae are effective traceability markers of fish products.

  11. Nematodes: Model Organisms in High School Biology

    Science.gov (United States)

    Bliss, TJ; Anderson, Margery; Dillman, Adler; Yourick, Debra; Jett, Marti; Adams, Byron J.; Russell, RevaBeth

    2007-01-01

    In a collaborative effort between university researchers and high school science teachers, an inquiry-based laboratory module was designed using two species of insecticidal nematodes to help students apply scientific inquiry and elements of thoughtful experimental design. The learning experience and model are described in this article. (Contains 4…

  12. Mermithid Nematodes: In Vitro Culture Attempts

    OpenAIRE

    Finney, Jean R.

    1981-01-01

    Few attempts at in vitro culture of mermithids have been undertaken. The various methods used to initiate cultures are described. The capacity of a range of media to promote growth and development of the nematodes has been evaluated and current approaches to in vitro outlined.

  13. Potato cyst nematodes: pests of national importance

    Science.gov (United States)

    Potato cyst nematodes (PCN; G. rostochiensis and G. pallida) are internationally-recognized quarantine pests and considered the most devastating pests of potatoes due to annual worldwide yield losses estimated at 12.2%. PCNs continue to spread throughout North America and were recently detected in I...

  14. Cell cycle activation by plant parasitic nematodes

    NARCIS (Netherlands)

    Goverse, A.; Almeida Engler, de J.; Verhees, J.; Krol, van der S.; Helder, J.; Gheysen, G.

    2000-01-01

    Sedentary nematodes are important pests of crop plants. They are biotrophic parasites that can induce the (re)differentiation of either differentiated or undifferentiated plant cells into specialized feeding cells. This (re)differentiation includes the reactivation of the cell cycle in specific plan

  15. Infective Juveniles of the Entomopathogenic Nematode, Steinernema feltiae Produce Cryoprotectants in Response to Freezing and Cold Acclimation.

    Science.gov (United States)

    Ali, Farman; Wharton, David A

    2015-01-01

    Steinernema feltiae is a moderately freeze-tolerant entomopathogenic nematode which survives intracellular freezing. We have detected by gas chromatography that infective juveniles of S. feltiae produce cryoprotectants in response to cold acclimation and to freezing. Since the survival of this nematode varies with temperature, we analyzed their cryoprotectant profiles under different acclimation and freezing regimes. The principal cryoprotectants detected were trehalose and glycerol with glucose being the minor component. The amount of cryoprotectants varied with the temperature and duration of exposure. Trehalose was accumulated in higher concentrations when nematodes were acclimated at 5°C for two weeks whereas glycerol level decreased from that of the non-acclimated controls. Nematodes were seeded with a small ice crystal and held at -1°C, a regime that does not produce freezing of the nematodes but their bodies lose water to the surrounding ice (cryoprotective dehydration). This increased the levels of both trehalose and glycerol, with glycerol reaching a higher concentration than trehalose. Nematodes frozen at -3°C, a regime that produces freezing of the nematodes and results in intracellular ice formation, had elevated glycerol levels while trehalose levels did not change. Steinernema feltiae thus has two strategies of cryoprotectant accumulation: one is an acclimation response to low temperature when the body fluids are in a cooled or supercooled state and the infective juveniles produce trehalose before freezing. During this process a portion of the glycerol is converted to trehalose. The second strategy is a rapid response to freezing which induces the production of glycerol but trehalose levels do not change. These low molecular weight compounds are surmised to act as cryoprotectants for this species and to play an important role in its freezing tolerance.

  16. Evolution of embryonic development in nematodes

    Directory of Open Access Journals (Sweden)

    Schulze Jens

    2011-09-01

    Full Text Available Abstract Background Nematodes can be subdivided into basal Enoplea (clades 1 and 2 and more derived Chromadorea (clades 3 to 12. Embryogenesis of Caenorhabditis elegans (clade 9 has been analyzed in most detail. Their establishment of polarity and asymmetric cleavage requires the differential localization of PAR proteins. Earlier studies on selected other nematodes revealed that embryonic development of nematodes is more diverse than the essentially invariant development of C. elegans and the classic study object Ascaris had suggested. To obtain a more detailed picture of variations and evolutionary trends we compared embryonic cell lineages and pattern formation in embryos of all 12 nematode clades. Methods The study was conducted using 4-D microscopy and 3-D modeling of developing embryos. Results We found dramatic differences compared to C. elegans in Enoplea but also considerable variations among Chromadorea. We discovered 'Polarity Organizing Centers' (POCs that orient cleavage spindles along the anterior-posterior axis in distinct cells over consecutive cell generations. The resulting lineally arranged blastomeres represent a starting point for the establishment of bilateral symmetry within individual lineages. We can discern six different early cleavage types and suggest that these variations are due to modifications in the activity of the POCs in conjunction with changes in the distribution of PAR proteins. In addition, our studies indicate that lineage complexity advanced considerably during evolution, that is we observe trends towards an increase of somatic founder cells, from monoclonal to polyclonal lineages and from a variable (position-dependent to an invariable (lineage-dependent way of cell fate specification. In contrast to the early phase of embryogenesis, the second half ('morphogenesis' appears similar in all studied nematodes. Comparison of early cleavage between the basal nematode Tobrilus stefanskii and the tardigrade

  17. Antarctic station life: The first 15 years of mixed expeditions to the Antarctic

    Science.gov (United States)

    Sarris, Aspa

    2017-02-01

    This study examined the experiences of women who lived and worked on remote and isolated Antarctic stations for up to 15 months at a time. The study employed purposeful sampling and a longitudinal - processual approach to study women's experiences over the first 15 years of mixed gender Antarctic expeditions. The retrospective analysis was based on a semi-structured interview administered to 14 women upon their return to Australia. The results showed that women referred to the natural physical Antarctic environment as one of the best aspects of their experience and the reason they would recommend the Antarctic to their friends as a good place to work. In describing the worst aspect of their experience, women referred to aspects of Antarctic station life, including: (i) the male dominated nature of station culture; (ii) the impact of interpersonal conflict, including gender based conflict and friction between scientists and trades workers; and (iii) the lack of anonymity associated with living and working with the same group of individuals, mainly men, for up to 12 months or more. The results are discussed within the context of the evolution of Antarctic station culture and recommendations are made in terms of the demography of expeditions, expeditioner selection and recruitment and the ongoing monitoring of Antarctic station culture. The study presents a framework that can be applied to groups and teams living and working in analogous isolated, confined and extreme work environments, including outer space missions.

  18. 76 FR 9849 - Comprehensive Environmental Evaluations for Antarctic Activities

    Science.gov (United States)

    2011-02-22

    .... SUPPLEMENTARY INFORMATION: Article 3 of Annex I to the Protocol on Environmental Protection to the Antarctic Treaty requires the preparation of a CEE for any proposed Antarctic activity likely to have more than a... Comprehensive Environmental Evaluations for Antarctic Activities SUMMARY: The Department of State gives...

  19. Antarctic “quiet” site stirs debate

    Science.gov (United States)

    Simarski, Lynn Teo

    Geophysicists from the United States and New Zealand plan to meet in the coming months to assess the electromagnetic pollution of an Antarctic site especially designated for research. U.S. scientists charge that a satellite Earth station erected apparently inside the preserve by New Zealand's Telecom company could interfere with experiments on the ionosphere and magnetosphere (Eos, April 28, 1992). The Site of Special Scientific Interest at Arrival Heights, the only Antarctic preserve specifically for physical science, is located near the U.S. McMurdo and New Zealand Scott bases.Debate over the Telecom facility inter-twines diplomatic and scientific issues. One question is whether the station violates the Antarctic treaty. Secondly, does it actually impair research at the site—or could it harm future experiments? To deepen the imbroglio, those involved from both nations say that transmissions from sources off-site also interfere with research—raising doubts about how pristine the site really is.

  20. NSF's role in Antarctic environment scrutinized

    Science.gov (United States)

    Bush, Susan

    In the last few years, the National Science Foundation has come under criticism by environmental groups for inadequate stewardship in the U.S. Antarctic Program's environmental issues. Since 1978, NSF was given full responsibility, by Executive Order, for budgeting and managing the entire U.S. national program in Antarctica, including logistics support. NSF has also been responsible for the compliance of the U.S. Antarctic Program with environmental protection measures agreed to by the Antarctic Treaty nations. Specifically under fire by environmentalists have been NSF's maintenance of a land-fill, open-air burning of solid waste, and the removal of toxic substances. According to Peter E. Wilkniss, director of the Division of Polar Programs at NSF, open burning is no longer taking place and will not be allowed in the future.

  1. Parasitic Nematode Immunomodulatory Strategies: Recent Advances and Perspectives

    Science.gov (United States)

    Cooper, Dustin; Eleftherianos, Ioannis

    2016-01-01

    More than half of the described species of the phylum Nematoda are considered parasitic, making them one of the most successful groups of parasites. Nematodes are capable of inhabiting a wide variety of niches. A vast array of vertebrate animals, insects, and plants are all identified as potential hosts for nematode parasitization. To invade these hosts successfully, parasitic nematodes must be able to protect themselves from the efficiency and potency of the host immune system. Innate immunity comprises the first wave of the host immune response, and in vertebrate animals it leads to the induction of the adaptive immune response. Nematodes have evolved elegant strategies that allow them to evade, suppress, or modulate host immune responses in order to persist and spread in the host. Nematode immunomodulation involves the secretion of molecules that are capable of suppressing various aspects of the host immune response in order to promote nematode invasion. Immunomodulatory mechanisms can be identified in parasitic nematodes infecting insects, plants, and mammals and vary greatly in the specific tactics by which the parasites modify the host immune response. Nematode-derived immunomodulatory effects have also been shown to affect, negatively or positively, the outcome of some concurrent diseases suffered by the host. Understanding nematode immunomodulatory actions will potentially reveal novel targets that will in turn lead to the development of effective means for the control of destructive nematode parasites. PMID:27649248

  2. Parasitic Nematode Immunomodulatory Strategies: Recent Advances and Perspectives

    Directory of Open Access Journals (Sweden)

    Dustin Cooper

    2016-09-01

    Full Text Available More than half of the described species of the phylum Nematoda are considered parasitic, making them one of the most successful groups of parasites. Nematodes are capable of inhabiting a wide variety of niches. A vast array of vertebrate animals, insects, and plants are all identified as potential hosts for nematode parasitization. To invade these hosts successfully, parasitic nematodes must be able to protect themselves from the efficiency and potency of the host immune system. Innate immunity comprises the first wave of the host immune response, and in vertebrate animals it leads to the induction of the adaptive immune response. Nematodes have evolved elegant strategies that allow them to evade, suppress, or modulate host immune responses in order to persist and spread in the host. Nematode immunomodulation involves the secretion of molecules that are capable of suppressing various aspects of the host immune response in order to promote nematode invasion. Immunomodulatory mechanisms can be identified in parasitic nematodes infecting insects, plants, and mammals and vary greatly in the specific tactics by which the parasites modify the host immune response. Nematode-derived immunomodulatory effects have also been shown to affect, negatively or positively, the outcome of some concurrent diseases suffered by the host. Understanding nematode immunomodulatory actions will potentially reveal novel targets that will in turn lead to the development of effective means for the control of destructive nematode parasites.

  3. Phylogenetic analysis and in vitro culture of mosses from the Antarctic Fildes Peninsula

    Institute of Scientific and Technical Information of China (English)

    LIU Shenghao; ZHANG Zhaohui; WANG Nengfei; CONG Bailin; ZHANG Pengying; LIN Xuezheng; HUANG Xiaohang

    2014-01-01

    Molecular genetic techniques have proven very useful for initial analysis of the extent of genetic variation and dispersal in several Antarctic moss species. In the present study, the small subunit ribosomal RNA (SSU rDNA) and internal transcribed spacers of the nuclear ribosomal DNA (ITS rDNA) were sequenced in nine individuals of different mosses from the Fildes Peninsula of Antarctica. Sequence alignment showed that the extreme environment tended to increase the genetic diversity of Antarctic mosses. In addition, in our phylogenetic analysis, one previously unidentiifed Antarctic moss species was characterized by comparison with SSU and ITS rDNA sequences of known moss species. Moreover, the optimal culture medium and conditions for surface explant sterilization and protonemata induction in tissue culture of Pohlia nutans were investigated. The successful establishment of a tissue culture protocol together with the phylogenetic analysis of Antarctic mosses will provide technological support to establish an effective resource regeneration method for discovering new functional genes and gaining novel insights into the mechanisms of stress acclimation.

  4. Loss of the insulator protein CTCF during nematode evolution

    Directory of Open Access Journals (Sweden)

    Schierenberg Einhard

    2009-08-01

    Full Text Available Abstract Background The zinc finger (ZF protein CTCF (CCCTC-binding factor is highly conserved in Drosophila and vertebrates where it has been shown to mediate chromatin insulation at a genomewide level. A mode of genetic regulation that involves insulators and insulator binding proteins to establish independent transcriptional units is currently not known in nematodes including Caenorhabditis elegans. We therefore searched in nematodes for orthologs of proteins that are involved in chromatin insulation. Results While orthologs for other insulator proteins were absent in all 35 analysed nematode species, we find orthologs of CTCF in a subset of nematodes. As an example for these we cloned the Trichinella spiralis CTCF-like gene and revealed a genomic structure very similar to the Drosophila counterpart. To investigate the pattern of CTCF occurrence in nematodes, we performed phylogenetic analysis with the ZF protein sets of completely sequenced nematodes. We show that three ZF proteins from three basal nematodes cluster together with known CTCF proteins whereas no zinc finger protein of C. elegans and other derived nematodes does so. Conclusion Our findings show that CTCF and possibly chromatin insulation are present in basal nematodes. We suggest that the insulator protein CTCF has been secondarily lost in derived nematodes like C. elegans. We propose a switch in the regulation of gene expression during nematode evolution, from the common vertebrate and insect type involving distantly acting regulatory elements and chromatin insulation to a so far poorly characterised mode present in more derived nematodes. Here, all or some of these components are missing. Instead operons, polycistronic transcriptional units common in derived nematodes, seemingly adopted their function.

  5. The bacterial community of entomophilic nematodes and host beetles.

    Science.gov (United States)

    Koneru, Sneha L; Salinas, Heilly; Flores, Gilberto E; Hong, Ray L

    2016-05-01

    Insects form the most species-rich lineage of Eukaryotes and each is a potential host for organisms from multiple phyla, including fungi, protozoa, mites, bacteria and nematodes. In particular, beetles are known to be associated with distinct bacterial communities and entomophilic nematodes. While entomopathogenic nematodes require symbiotic bacteria to kill and reproduce inside their insect hosts, the microbial ecology that facilitates other types of nematode-insect associations is largely unknown. To illuminate detailed patterns of the tritrophic beetle-nematode-bacteria relationship, we surveyed the nematode infestation profiles of scarab beetles in the greater Los Angeles area over a five-year period and found distinct nematode infestation patterns for certain beetle hosts. Over a single season, we characterized the bacterial communities of beetles and their associated nematodes using high-throughput sequencing of the 16S rRNA gene. We found significant differences in bacterial community composition among the five prevalent beetle host species, independent of geographical origin. Anaerobes Synergistaceae and sulphate-reducing Desulfovibrionaceae were most abundant in Amblonoxia beetles, while Enterobacteriaceae and Lachnospiraceae were common in Cyclocephala beetles. Unlike entomopathogenic nematodes that carry bacterial symbionts, insect-associated nematodes do not alter the beetles' native bacterial communities, nor do their microbiomes differ according to nematode or beetle host species. The conservation of Diplogastrid nematodes associations with Melolonthinae beetles and sulphate-reducing bacteria suggests a possible link between beetle-bacterial communities and their associated nematodes. Our results establish a starting point towards understanding the dynamic interactions between soil macroinvertebrates and their microbiota in a highly accessible urban environment.

  6. Mysterious iodine-overabundance in Antarctic meteorites

    Science.gov (United States)

    Dreibus, G.; Waenke, H.; Schultz, L.

    1986-01-01

    Halogen as well as other trace element concentrations in meteorite finds can be influenced by alteration processes on the Earth's surface. The discovery of Antarctic meteorites offered the opportunity to study meteorites which were kept in one of the most sterile environment of the Earth. Halogen determination in Antartic meteorites was compared with non-Antarctic meteorites. No correlation was found between iodine concentration and the weathering index, or terrestrial age. The halogen measurements indicate a contaminating phase rich in iodine and also containing chlorine. Possible sources for this contamination are discussed.

  7. Terrestrial and submarine evidence for the extent and timing of the Last Glacial Maximum and the onset of deglaciation on the maritime-Antarctic and sub-Antarctic islands

    Science.gov (United States)

    Hodgson, Dominic A.; Graham, Alastair G. C.; Roberts, Stephen J.; Bentley, Michael J.; Cofaigh, Colm Ó.; Verleyen, Elie; Vyverman, Wim; Jomelli, Vincent; Favier, Vincent; Brunstein, Daniel; Verfaillie, Deborah; Colhoun, Eric A.; Saunders, Krystyna M.; Selkirk, Patricia M.; Mackintosh, Andrew; Hedding, David W.; Nel, Werner; Hall, Kevin; McGlone, Matt S.; Van der Putten, Nathalie; Dickens, William A.; Smith, James A.

    2014-09-01

    This paper is the maritime and sub-Antarctic contribution to the Scientific Committee for Antarctic Research (SCAR) Past Antarctic Ice Sheet Dynamics (PAIS) community Antarctic Ice Sheet reconstruction. The overarching aim for all sectors of Antarctica was to reconstruct the Last Glacial Maximum (LGM) ice sheet extent and thickness, and map the subsequent deglaciation in a series of 5000 year time slices. However, our review of the literature found surprisingly few high quality chronological constraints on changing glacier extents on these timescales in the maritime and sub-Antarctic sector. Therefore, in this paper we focus on an assessment of the terrestrial and offshore evidence for the LGM ice extent, establishing minimum ages for the onset of deglaciation, and separating evidence of deglaciation from LGM limits from those associated with later Holocene glacier fluctuations. Evidence included geomorphological descriptions of glacial landscapes, radiocarbon dated basal peat and lake sediment deposits, cosmogenic isotope ages of glacial features and molecular biological data. We propose a classification of the glacial history of the maritime and sub-Antarctic islands based on this assembled evidence. These include: (Type I) islands which accumulated little or no LGM ice; (Type II) islands with a limited LGM ice extent but evidence of extensive earlier continental shelf glaciations; (Type III) seamounts and volcanoes unlikely to have accumulated significant LGM ice cover; (Type IV) islands on shallow shelves with both terrestrial and submarine evidence of LGM (and/or earlier) ice expansion; (Type V) Islands north of the Antarctic Polar Front with terrestrial evidence of LGM ice expansion; and (Type VI) islands with no data. Finally, we review the climatological and geomorphological settings that separate the glaciological history of the islands within this classification scheme.

  8. Antarctic epilithic lichens as niches for black meristematic fungi.

    Science.gov (United States)

    Selbmann, Laura; Grube, Martin; Onofri, Silvano; Isola, Daniela; Zucconi, Laura

    2013-05-17

    Sixteen epilithic lichen samples (13 species), collected from seven locations in Northern and Southern Victoria Land in Antarctica, were investigated for the presence of black fungi. Thirteen fungal strains isolated were studied by both morphological and molecular methods. Nuclear ribosomal 18S gene sequences were used together with the most similar published and unpublished sequences of fungi from other sources, to reconstruct an ML tree. Most of the studied fungi could be grouped together with described or still unnamed rock-inhabiting species in lichen dominated Antarctic cryptoendolithic communities. At the edge of life, epilithic lichens withdraw inside the airspaces of rocks to find conditions still compatible with life; this study provides evidence, for the first time, that the same microbes associated to epilithic thalli also have the same fate and chose endolithic life. These results support the concept of lichens being complex symbiotic systems, which offer attractive and sheltered habitats for other microbes.

  9. Antarctic Epilithic Lichens as Niches for Black Meristematic Fungi

    Directory of Open Access Journals (Sweden)

    Laura Zucconi

    2013-05-01

    Full Text Available Sixteen epilithic lichen samples (13 species, collected from seven locations in Northern and Southern Victoria Land in Antarctica, were investigated for the presence of black fungi. Thirteen fungal strains isolated were studied by both morphological and molecular methods. Nuclear ribosomal 18S gene sequences were used together with the most similar published and unpublished sequences of fungi from other sources, to reconstruct an ML tree. Most of the studied fungi could be grouped together with described or still unnamed rock-inhabiting species in lichen dominated Antarctic cryptoendolithic communities. At the edge of life, epilithic lichens withdraw inside the airspaces of rocks to find conditions still compatible with life; this study provides evidence, for the first time, that the same microbes associated to epilithic thalli also have the same fate and chose endolithic life. These results support the concept of lichens being complex symbiotic systems, which offer attractive and sheltered habitats for other microbes.

  10. Key strongylid nematodes of animals - Impact of next-generation transcriptomics on systems biology and biotechnology.

    Science.gov (United States)

    Cantacessi, Cinzia; Campbell, Bronwyn E; Gasser, Robin B

    2012-01-01

    The advent and integration of high-throughput 'omic technologies (e.g., genomics, transcriptomics, proteomics and metabolomics) are becoming instrumental to assist fundamental explorations of the systems biology of organisms. In particular, these technologies now provide unique opportunities for global, molecular investigations of parasites. For example, studies of the transcriptomes (all transcripts in an organism, tissue or cell) of different species and/or developmental stages of parasitic nematodes provide insights into aspects of gene expression, regulation and function, which is a major step to understanding their biology. The purpose of this article was to review salient aspects of the systematics and biology of selected species of parasitic nematodes (particularly key species of the order Strongylida) of socio-economic importance, to describe conventional and advanced sequencing technologies and bioinformatic tools for large-scale investigations of the transcriptomes of these parasites and to highlight the prospects and implications of these explorations for developing novel methods of parasite intervention.

  11. The nuclear receptor DAF-12 regulates nutrient metabolism and reproductive growth in nematodes.

    Directory of Open Access Journals (Sweden)

    Zhu Wang

    2015-03-01

    Full Text Available Appropriate nutrient response is essential for growth and reproduction. Under favorable nutrient conditions, the C. elegans nuclear receptor DAF-12 is activated by dafachronic acids, hormones that commit larvae to reproductive growth. Here, we report that in addition to its well-studied role in controlling developmental gene expression, the DAF-12 endocrine system governs expression of a gene network that stimulates the aerobic catabolism of fatty acids. Thus, activation of the DAF-12 transcriptome coordinately mobilizes energy stores to permit reproductive growth. DAF-12 regulation of this metabolic gene network is conserved in the human parasite, Strongyloides stercoralis, and inhibition of specific steps in this network blocks reproductive growth in both of the nematodes. Our study provides a molecular understanding for metabolic adaptation of nematodes to their environment, and suggests a new therapeutic strategy for treating parasitic diseases.

  12. Mucocutaneous manifestations of helminth infections: Nematodes.

    Science.gov (United States)

    Lupi, Omar; Downing, Christopher; Lee, Michael; Pino, Livia; Bravo, Francisco; Giglio, Patricia; Sethi, Aisha; Klaus, Sidney; Sangueza, Omar P; Fuller, Claire; Mendoza, Natalia; Ladizinski, Barry; Woc-Colburn, Laila; Tyring, Stephen K

    2015-12-01

    In the 21st century, despite increased globalization through international travel for business, medical volunteerism, pleasure, and immigration/refugees into the United States, there is little published in the dermatology literature regarding the cutaneous manifestations of helminth infections. Approximately 17% of travelers seek medical care because of cutaneous disorders, many related to infectious etiologies. This review will focus on the cutaneous manifestations of helminth infections and is divided into 2 parts: part I focuses on nematode infections, and part II focuses on trematode and cestode infections. This review highlights the clinical manifestations, transmission, diagnosis, and treatment of helminth infections. Nematodes are roundworms that cause diseases with cutaneous manifestations, such as cutaneous larval migrans, onchocerciasis, filariasis, gnathostomiasis, loiasis, dracunculiasis, strongyloidiasis, ascariasis, streptocerciasis, dirofilariasis, and trichinosis. Tremadotes, also known as flukes, cause schistosomiasis, paragonimiasis, and fascioliasis. Cestodes (tapeworms) are flat, hermaphroditic parasites that cause diseases such as sparganosis, cysticercosis, and echinococcus.

  13. Immunity to gastrointestinal nematodes: mechanisms and myths.

    Science.gov (United States)

    Grencis, Richard K; Humphreys, Neil E; Bancroft, Allison J

    2014-07-01

    Immune responses to gastrointestinal nematodes have been studied extensively for over 80 years and intensively investigated over the last 30-40 years. The use of laboratory models has led to the discovery of new mechanisms of protective immunity and made major contributions to our fundamental understanding of both innate and adaptive responses. In addition to host protection, it is clear that immunoregulatory processes are common in infected individuals and resistance often operates alongside modulation of immunity. This review aims to discuss the recent discoveries in both host protection and immunoregulation against gastrointestinal nematodes, placing the data in context of the specific life cycles imposed by the different parasites studied and the future challenges of considering the mucosal/immune axis to encompass host, parasite, and microbiome in its widest sense.

  14. Antarctic Data Management as Part of the IPY Legacy

    Science.gov (United States)

    de Bruin, T.

    2006-12-01

    The Antarctic Treaty states that "scientific observations and results from Antarctica shall be exchanged and made freely available". Antarctica includes the Southern Ocean. In support of this, National Antarctic Data Centres (NADC) are being established to catalogue data sets and to provide information on data sets to scientists and others with interest in Antarctic science. The Joint Committee on Antarctic Data Management (JCADM) was established by the Scientific Committee on Antarctic Research (SCAR) and the Council of Managers of National Antarctic Programs (COMNAP). JCADM comprises representatives of the National Antarctic Data Centres. Currently 30 nations around the world are represented in JCADM. JCADM is responsible for the Antarctic Master Directory (AMD), the internationally accessible, web-based, searchable record of Antarctic and Southern Ocean data set descriptions. The AMD is directly integrated into the international Global Change Master Directory (GCMD) to help further merge Antarctic science into global science. The AMD is a resource for scientists to advertise the data they have collected and to search for data they may need. JCADM is the Antarctic component of the IPY Data Infrastructure, which is presently being developed. This presentation will give an overview of the organization of Antarctic and Southern Ocean data management with sections on the organizational structure of JCADM, contents of the Antarctic Master Directory, relationships to the SCAR Scientific Research Programmes (SRP) and IPY, international embedding and connections with discipline-based peer organizations like the International Oceanographic Data and Information Exchange Committee (IODE). It will focus primarily on the role that an existing infrastructure as JCADM, may play in the development of the IPY Data Infrastructure and will provide considerations for IPY data management, based on the experiences in Antarctic and oceanographic data management.

  15. Computational and phylogenetic validation of nematode horizontal gene transfer

    OpenAIRE

    Bird David; Scholl Elizabeth H

    2011-01-01

    Abstract Sequencing of expressed genes has shown that nematodes, particularly the plant-parasitic nematodes, have genes purportedly acquired from other kingdoms by horizontal gene transfer. The prevailing orthodoxy is that such transfer has been a driving force in the evolution of niche specificity, and a recent paper in BMC Evolutionary Biology that presents a detailed phylogenetic analysis of cellulase genes in the free-living nematode Pristionchus pacificus at the species, genus and family...

  16. Intraocular nematode with diffuse unilateral subacute neuroretinitis: case report

    OpenAIRE

    Zakariah Sakinah; Said Mariyani; Alwi Azma-Azalina; Yusoff Munira,; Ghani Zulkifli; Zunaina Embong

    2011-01-01

    Abstract Background Live intraocular nematode is a rare occurrence. Nematode can migrate actively within the eye, creating visual symptoms and damaging ocular tissue. Case presentation A 26-year old man presented with painless reduced vision of the left eye for one week duration. It was associated with floaters. Visual acuity on the left eye was hand movement. Anterior segment examination was normal with normal intra-ocular pressure. Fundus examination showed a live nematode lying subretinall...

  17. Bacillus thuringiensis crystal proteins that target nematodes

    OpenAIRE

    Wei, Jun-Zhi; Hale, Kristina; Carta, Lynn; Platzer, Edward; Wong, Cynthie; Fang, Su-Chiung; Aroian, Raffi V.

    2003-01-01

    Bacillus thuringiensis (Bt) crystal proteins are pore-forming toxins used as insecticides around the world. Previously, the extent to which these proteins might also target the invertebrate phylum Nematoda has been mostly ignored. We have expressed seven different crystal toxin proteins from two largely unstudied Bt crystal protein subfamilies. By assaying their toxicity on diverse free-living nematode species, we demonstrate that four of these crystal proteins are active against multiple nem...

  18. Metal stress in free-living nematodes

    OpenAIRE

    Hamelijnck-Arts, M.S.J.

    2001-01-01

    Terrestrial invertebrates offer meaningful targets for assessing the potential adverse effects of chemicals on soil ecosystems. Invertebrates play a major role in the functioning of the soil ecosystem by enhancing the soil structure, mineralization and the decomposition of organic material, and because of their role in the foodweb. The most dominant group of terrestrial invertebrates, in fact of all multicellular organisms on earth, are nematodes, also called threadworms or roundworms. Nemato...

  19. Global dynamics of the Antarctic ice sheet

    NARCIS (Netherlands)

    Oerlemans, J.

    2002-01-01

    The total mass budget of the Antarctic ice sheet is studied with a simple axi-symmetrical model. The ice-sheet has a parabolic profile resting on a bed that slopes linearly downwards from the centre of the ice sheet into the ocean. The mean ice velocity at the grounding line is assumed to be proport

  20. Contrasts between Antarctic and Arctic ozone depletion.

    Science.gov (United States)

    Solomon, Susan; Portmann, Robert W; Thompson, David W J

    2007-01-09

    This work surveys the depth and character of ozone depletion in the Antarctic and Arctic using available long balloon-borne and ground-based records that cover multiple decades from ground-based sites. Such data reveal changes in the range of ozone values including the extremes observed as polar air passes over the stations. Antarctic ozone observations reveal widespread and massive local depletion in the heart of the ozone "hole" region near 18 km, frequently exceeding 90%. Although some ozone losses are apparent in the Arctic during particular years, the depth of the ozone losses in the Arctic are considerably smaller, and their occurrence is far less frequent. Many Antarctic total integrated column ozone observations in spring since approximately the 1980s show values considerably below those ever observed in earlier decades. For the Arctic, there is evidence of some spring season depletion of total ozone at particular stations, but the changes are much less pronounced compared with the range of past data. Thus, the observations demonstrate that the widespread and deep ozone depletion that characterizes the Antarctic ozone hole is a unique feature on the planet.

  1. Assaying environmental nickel toxicity using model nematodes.

    Directory of Open Access Journals (Sweden)

    David Rudel

    Full Text Available Although nickel exposure results in allergic reactions, respiratory conditions, and cancer in humans and rodents, the ramifications of excess nickel in the environment for animal and human health remain largely undescribed. Nickel and other cationic metals travel through waterways and bind to soils and sediments. To evaluate the potential toxic effects of nickel at environmental contaminant levels (8.9-7,600 µg Ni/g dry weight of sediment and 50-800 µg NiCl2/L of water, we conducted assays using two cosmopolitan nematodes, Caenorhabditis elegans and Pristionchus pacificus. We assayed the effects of both sediment-bound and aqueous nickel upon animal growth, developmental survival, lifespan, and fecundity. Uncontaminated sediments were collected from sites in the Midwestern United States and spiked with a range of nickel concentrations. We found that nickel-spiked sediment substantially impairs both survival from larval to adult stages and adult longevity in a concentration-dependent manner. Further, while aqueous nickel showed no adverse effects on either survivorship or longevity, we observed a significant decrease in fecundity, indicating that aqueous nickel could have a negative impact on nematode physiology. Intriguingly, C. elegans and P. pacificus exhibit similar, but not identical, responses to nickel exposure. Moreover, P. pacificus could be tested successfully in sediments inhospitable to C. elegans. Our results add to a growing body of literature documenting the impact of nickel on animal physiology, and suggest that environmental toxicological studies could gain an advantage by widening their repertoire of nematode species.

  2. Prevalence of intestinal nematodes in alcoholic patients

    Directory of Open Access Journals (Sweden)

    Zago-Gomes Maria P.

    2002-01-01

    Full Text Available We report the results of a retrospective study on the frequency of intestinal nematodes among 198 alcoholic and 440 nonalcoholic patients at the University Hospital Cassiano Antonio Moraes in Vitória, ES, Brazil. The control sample included 194 nonalcoholic patients matched according to age, sex and neighborhood and a random sample of 296 adults admitted at the same hospital. Stool examination by sedimentation method (three samples was performed in all patients. There was a significantly higher frequency of intestinal nematodes in alcoholics than in controls (35.3% and 19.2%, respectively, due to a higher frequency of Strongyloides stercoralis (21.7% and 4.1%, respectively. Disregarding this parasite, the frequency of the other nematodes was similar in both groups. The higher frequency of S. stercoralis infection in alcoholics could be explained by immune modulation and/or by some alteration in corticosteroid metabolism induced by chronic ethanol ingestion. Corticosteroid metabolites would mimic the worm ecdisteroids, that would in turn increase the fecundity of females in duodenum and survival of larvae. Consequently, the higher frequency of Strongyloides larvae in stool of alcoholics does not necessarily reflect an increased frequency of infection rate, but only an increased chance to present a positive stool examination using sedimentation methods.

  3. Assaying environmental nickel toxicity using model nematodes

    Science.gov (United States)

    Rudel, David; Douglas, Chandler; Huffnagle, Ian; Besser, John M.; Ingersoll, Christopher G.

    2013-01-01

    Although nickel exposure results in allergic reactions, respiratory conditions, and cancer in humans and rodents, the ramifications of excess nickel in the environment for animal and human health remain largely undescribed. Nickel and other cationic metals travel through waterways and bind to soils and sediments. To evaluate the potential toxic effects of nickel at environmental contaminant levels (8.9-7,600 µg Ni/g dry weight of sediment and 50-800 µg NiCl2/L of water), we conducted assays using two cosmopolitan nematodes, Caenorhabditis elegans and Pristionchus pacificus. We assayed the effects of both sediment-bound and aqueous nickel upon animal growth, developmental survival, lifespan, and fecundity. Uncontaminated sediments were collected from sites in the Midwestern United States and spiked with a range of nickel concentrations. We found that nickel-spiked sediment substantially impairs both survival from larval to adult stages and adult longevity in a concentration-dependent manner. Further, while aqueous nickel showed no adverse effects on either survivorship or longevity, we observed a significant decrease in fecundity, indicating that aqueous nickel could have a negative impact on nematode physiology. Intriguingly, C. elegansand P. pacificus exhibit similar, but not identical, responses to nickel exposure. Moreover, P. pacificus could be tested successfully in sediments inhospitable to C. elegans. Our results add to a growing body of literature documenting the impact of nickel on animal physiology, and suggest that environmental toxicological studies could gain an advantage by widening their repertoire of nematode species.

  4. Nematode locomotion in unconfined and confined fluids

    Science.gov (United States)

    Bilbao, Alejandro; Wajnryb, Eligiusz; Vanapalli, Siva A.; Blawzdziewicz, Jerzy

    2013-08-01

    The millimeter-long soil-dwelling nematode Caenorhabditis elegans propels itself by producing undulations that propagate along its body and turns by assuming highly curved shapes. According to our recent study [V. Padmanabhan et al., PLoS ONE 7, e40121 (2012), 10.1371/journal.pone.0040121] all these postures can be accurately described by a piecewise-harmonic-curvature model. We combine this curvature-based description with highly accurate hydrodynamic bead models to evaluate the normalized velocity and turning angles for a worm swimming in an unconfined fluid and in a parallel-wall cell. We find that the worm moves twice as fast and navigates more effectively under a strong confinement, due to the large transverse-to-longitudinal resistance-coefficient ratio resulting from the wall-mediated far-field hydrodynamic coupling between body segments. We also note that the optimal swimming gait is similar to the gait observed for nematodes swimming in high-viscosity fluids. Our bead models allow us to determine the effects of confinement and finite thickness of the body of the nematode on its locomotion. These effects are not accounted for by the classical resistive-force and slender-body theories.

  5. Extracting DNA of nematodes communities from Argentine Pampas agricultural soils

    Directory of Open Access Journals (Sweden)

    Eduardo A. Mondino

    2015-06-01

    Full Text Available We examined four strategies (Tris/EDTA, sodium dodecyl sulfate, Chelex 100 resin and cetyltrimethylammonium bromide -CTAB- for extracting nucleic acid (DNA from communities of nematodes. Nematodes were isolated from an agricultural area under different management of long-term crop rotation experiment from Argentina during three seasons. After DNA extraction, Polymerase Chain Reaction-amplifications were performed and considered as indicators of successful DNA extraction. The CTAB combined with proteinase K and phenol-chloroform-isoamyl alcohol was the unique successful method because positive amplifications were obtained by using both eukaryotic and nematode specific primers. This work could contribute to biodiversity studies of nematodes on agroecosystems.

  6. Extracting DNA of nematodes communities from Argentine Pampas agricultural soils.

    Science.gov (United States)

    Mondino, Eduardo A; Covacevich, Fernanda; Studdert, Guillermo A; Pimentel, João P; Berbara, Ricardo L L

    2015-01-01

    We examined four strategies (Tris/EDTA, sodium dodecyl sulfate, Chelex 100 resin and cetyltrimethylammonium bromide -CTAB-) for extracting nucleic acid (DNA) from communities of nematodes. Nematodes were isolated from an agricultural area under different management of long-term crop rotation experiment from Argentina during three seasons. After DNA extraction, Polymerase Chain Reaction-amplifications were performed and considered as indicators of successful DNA extraction. The CTAB combined with proteinase K and phenol-chloroform-isoamyl alcohol was the unique successful method because positive amplifications were obtained by using both eukaryotic and nematode specific primers. This work could contribute to biodiversity studies of nematodes on agroecosystems.

  7. Long-term in vitro system for maintenance and amplification of root-knot nematodes in Cucumis sativus roots

    Directory of Open Access Journals (Sweden)

    Fernando E. eDíaz-Manzano

    2016-02-01

    Full Text Available Root-knot nematodes (RKN are polyphagous plant-parasitic roundworms that produce large crop losses, representing a relevant agricultural pest worldwide. After infection, they induce swollen root structures called galls containing giant cells (GCs indispensable for nematode development. Among efficient control methods are biotechnology-based strategies that require a deep knowledge of underlying molecular processes during the plant-nematode interaction. Methods of achieving this knowledge include the application of molecular biology techniques such as transcriptomics (massive sequencing or microarray hybridization, proteomics or metabolomics. These require aseptic experimental conditions, as undetected contamination with other microorganisms could compromise the interpretation of the results. Herein, we present a simple, efficient and long-term method for nematode amplification on cucumber roots grown in vitro. Amplification of juveniles (J2 from the starting inoculum is around 40-fold. The method was validated for three Meloidogyne species (M. javanica, M. incognita and M. arenaria, producing viable and robust freshly hatched J2s. These can be used for further in vitro infection of different plant species such as Arabidopsis, tobacco and tomato, as well as enough J2s to maintain the population. The method allowed maintenance of around 90 Meloidogyne spp. generations (one every two months from a single initial female over 15 years.

  8. Occurrence and distribution of nematodes in rice fields in Guilan province, Iran and the first record of Mylonchulus polonicus (Stefanski, 1915 Cobb, 1917 (Nematoda: Mononchina

    Directory of Open Access Journals (Sweden)

    Shahabi Soheila

    2016-12-01

    Full Text Available The distribution of nematodes was studied in rice fields in Guilan province, Iran, from 2014 to 2016. Nematode biodiversity of 250 soil and root samples was examined. Thirty nematode species were identified morphologically, including plant parasites, microbivores and mycetophagous and predator species. Molecular techniques were also used for further identification of three plant parasitic species. Indicators of population were also estimated. Spiral nematodes (Helicotylenchus crenacauda Sher, 1966 and H. digitiformis Ivanova, 1967 and stunt nematode (Tylenchorhynchus agri were the predominant parasitic species identified. Among other species, three mononchid species were identified namely Mononchus aquaticus, Mylonchulus sigmaturus and M. polonicus. The species M. polonicus was found and reported in Iran for the first time. The two plant parasitic species T. agri and Xiphinema index were reported in association with rice in Iran for the first time. To evaluate the distribution and incidence of Aphelenchoides besseyi (rice white-tip nematode in different regions of Guilan province, a total of 255 fresh seed samples were collected/inspected, of which, about 40% of them were infested with A. besseyi. Of the 16 studied counties, the highest percentage of infected seeds came from fields around the city of Astara (69.2% and the second highest infection was observed near the city of Anzali (60%.

  9. Neogene kinematic history of Nazca-Antarctic-Phoenix slab windows beneath Patagonia and the Antarctic Peninsula

    Science.gov (United States)

    Breitsprecher, Katrin; Thorkelson, Derek J.

    2009-01-01

    The Patagonian slab window is a subsurface tectonic feature resulting from subduction of the Nazca-Antarctic spreading-ridge system (Chile Rise) beneath southern South America. The geometry of the slab window had not been rigorously defined, in part because of the complex nature of the history of ridge subduction in the southeast Pacific region, which includes four interrelated spreading-ridge systems since 20 Ma: first, the Nazca-Phoenix ridge beneath South America, then simultaneous subduction of the Nazca-Antarctic and the northern Phoenix-Antarctic spreading-ridge systems beneath South America, and the southern Phoenix-Antarctic spreading-ridge system beneath Antarctica. Spreading-ridge paleo-geographies and rotation poles for all relevant plate pairs (Nazca, Phoenix, Antarctic, South America) are available from 20 Ma onward, and form the mathematical basis of our kinematic reconstruction of the geometry of the Patagonia and Antarctic slab windows through Neogene time. At approximately 18 Ma, the Nazca-Phoenix-Antarctic oceanic (ridge-ridge-ridge) triple junction enters the South American trench; we recognize this condition as an unstable quadruple junction. Heat flow at this junction and for some distance beneath the forearc would be considerably higher than is generally recognized in cases of ridge subduction. From 16 Ma onward, the geometry of the Patagonia slab window developed from the subduction of the trailing arms of the former oceanic triple junction. The majority of the slab window's areal extent and geometry is controlled by the highly oblique (near-parallel) subduction angle of the Nazca-Antarctic ridge system, and by the high contrast in relative convergence rates between these two plates relative to South America. The very slow convergence rate of the Antarctic slab is manifested by the shallow levels achieved by the slab edge (< 45 km); thus no point on the Antarctic slab is sufficiently deep to generate "normal" mantle-derived arc-type magmas

  10. A snapshot at the microbial ecology of petroleum contaminated sub-Antarctic soils

    Energy Technology Data Exchange (ETDEWEB)

    Ferrari, B.; Vandorst, J. [New South Wales Univ., Randwick, NSW (Australia). School of Biotechnology and Biomolecular Sciences; Snape, I.; Ferguson, S. [Australian Antarctic Div., Kingston, Tasmania (Australia)

    2010-07-01

    This study investigated the microbial diversity of the viable soil bacterial community in sub-Antarctic soils contaminated with hydrocarbons. The aim of the study was to develop a remediation strategy for petroleum contamination at a research station located on Macquarie Island. A soil substrate membrane system (SSMS) was used along with flow cytometry and molecular analysis techniques to characterize bacterial diversity following contamination with special Antarctic blend diesel. Independent analyses of both aerobic and anaerobic fractions within the soil were conducted. The study showed that the aerobic fraction of the community was more susceptible to hydrocarbon contamination, with a significant decline in total bacterial numbers. The addition of petroleum significantly altered the dominance of microbial families within the community. Results supported previous reports that the SSMS is capable of providing a more accurate snapshot of environmental diversity than traditional culturing techniques.

  11. Searching for eukaryotic life preserved in Antarctic permafrost

    Science.gov (United States)

    Onofri, Silvano; Zucconi, Laura; Selbmann, Laura; Ripa, Caterina; Frisvad, Jens Christian; Guglielmin, Mauro; Turchetti, Benedetta; Buzzini, Pietro

    Permafrost is defined as a soil remaining at 0 C or below throughout two or more consecutive years. Mainly present in polar areas, it occurs in all ice-free areas of Continental Antarc-tica. With the evidences of the possible presence of water ice below the surface of Mars and Moon, permafrost is now considered a possible reservoir of prokaryotic and eukaryotic spores outside the Earth. Cultivable fungi and yeasts have been isolated from Antarctic permafrost collected at different depths (233, 316 and 335 cm) in the McMurdo Dry Valleys, the largest ice-free area in Antarctica, and identified with cultural, physiological and molecular methods. Filamentous fungi belonged to the genera Penicillium, Eurotium, Cladosporium, Alternaria, Engyodonthium, Cordiceps, Rhizopus, Aureobasidium, whereas yeasts belonged to the genera Cryptococcus and Sporidiobolus. Penicillia were the most represented, and the most frequently recorded species were Penicillium palitans and P. chrysogenum. Most of the species found have been already recorded in Antarctic ecosystems as well as in other cold habitats (Onofri et al., 2007); for Eurotium amstelodami and Cryptococcus stepposus these are the first isolations in Antarctica. All the filamentous fungal isolates can be defined as mesophilic having optimal growth temperatures at 20-25 C and poor growth at 0 C after prolonged incubation. All the yeast isolates grew within a wide range of temperature (from 4 to 25 C). The molecular anal-yses based on the ITS rDNA sequences, for filamentous fungi, and on D1/D2 domain of LSU rRNA gene and ITS sequences for yeasts, revealed that these genotypes do not deviate from the global gene pool of microorganisms commonly spreading worldwide at present. Annual mean permafrost temperature (MAPT) in the sampling area was -18.8 C in 2008, with daily fluctuations lower than 1 C/day at 1 m of depth, but less 0.5 C/year at the depth of 17 m (Guglielmin pers. com.), and maximum thaw depth not exceeding 1 m

  12. Control of the peachtree borer using beneficial nematodes

    Science.gov (United States)

    The peachtree borer, Synanthedon exitiosa, is a major pest of peaches and other stone fruits. Our research indicates that entomopathogenic nematodes, also known as beneficial nematodes, can be used effectively to control the insect. We conducted replicated experiments in randomized block designs ov...

  13. Systematics, ecology and feeding biology of estuarine nematodes

    NARCIS (Netherlands)

    Bouwman, L.A.

    1983-01-01

    As part of extensive biological and chemical investigations in the Ems estuary, the nematode fauna of this area (mainly located in the sediments of tidal flats) was studied.First, a new method of isolating nematodes was developed, as none of the existing methods appeared to be quantitatively reliabl

  14. Sex-specific mating pheromones in the nematode Panagrellus redivivus

    Science.gov (United States)

    Despite advances in medicine and crop genetics, nematodes remain significant human pathogens and agricultural pests. This warrants investigation of alternative strategies for pest control, such as interference with pheromone-mediated reproduction. Because only two nematode species have had their phe...

  15. Transgenesis in parasitic nematodes: building a better array

    OpenAIRE

    Lok, James B.

    2009-01-01

    In spite of recent progress in the development of transgenesis in parasitic nematodes, several impediments remain before this methodology can become a practical and widely employed tool in parasitology. Recently published studies on transgenesis in the necromenic nematode Pristionchus pacificus from the laboratory of Ralf Sommer highlight several leads that might be valuable as efforts to refine current systems in obligate parasites go forward.

  16. Soybean lines evaluated for resistance to reniform nematode

    Science.gov (United States)

    Seventy-four wild and domestic soybean (Glycine max and G. soja) lines were evaluated for resistance to reniform nematode (Rotylenchulus reniformis) in growth chamber tests with a day length of 16 hours and temperature held constant at 28 C. Several entries for which reactions to reniform nematode w...

  17. [Resistance to anthelmintics in nematodes in sheep and goats].

    Science.gov (United States)

    Praslicka, J; Corba, J

    1995-08-01

    The article offers a brief view on the most important theoretical knowledge of resistance of gastrointestinal nematodes to anthelmintic drugs in sheep and goats. Besides the definition and basic terms, factors of development and occurrence of resistance on farm are analyzed. Furthermore, methods for detection of resistant nematodes as well as complex of recommended preventive measures are given.

  18. 76 FR 60357 - Golden Nematode; Removal of Regulated Areas

    Science.gov (United States)

    2011-09-29

    ... Animal and Plant Health Inspection Service 7 CFR Part 301 Golden Nematode; Removal of Regulated Areas... Genesee County, NY, from the list of generally infested areas. Surveys have shown that the fields in these two townships are free of golden nematode, and we have determined that regulation of these areas is...

  19. A satellite explosion in the genome of holocentric nematodes.

    Directory of Open Access Journals (Sweden)

    Juan A Subirana

    Full Text Available Centromere sequences in the genome are associated with the formation of kinetochores, where spindle microtubules grow in mitosis. Centromere sequences usually have long tandem repeats (satellites. In holocentric nematodes it is not clear how kinetochores are formed during mitosis; they are distributed throughout the chromosomes. For this reason it appeared of interest to study the satellites in nematodes in order to determine if they offer any clue on how kinetochores are assembled in these species. We have studied the satellites in the genome of six nematode species. We found that the presence of satellites depends on whether the nematode chromosomes are holocentric or monocentric. It turns out that holocentric nematodes are unique because they have a large number of satellites scattered throughout their genome. Their number, length and composition are different in each species: they apparently have very little evolutionary conservation. In contrast, no scattered satellites are found in the monocentric nematode Trichinella spiralis. It appears that the absence/presence of scattered satellites in the genome distinguishes monocentric from holocentric nematodes. We conclude that the presence of satellites is related to the holocentric nature of the chromosomes of most nematodes. Satellites may stabilize a higher order structure of chromatin and facilitate the formation of kinetochores. We also present a new program, SATFIND, which is suited to find satellite sequences.

  20. Mapping genetic factors controlling potato/cyst nematode interactions.

    NARCIS (Netherlands)

    Rouppe van der Voort, J.N.A.M.

    1998-01-01

    The thesis describes strategies for genetic mapping of the genomes of the potato cyst nematode and potato. Mapping in cyst nematodes was achieved by AFLP genotyping of single cysts and subsequent segregation analysis in a family of sibling populations. The genetic map of Globodera rostochiensis comp

  1. Conserved nematode signaling molecules elicit plant defenses and pathogen resistance

    Science.gov (United States)

    Nematodes, which are ubiquitous in soil and are estimated to cause $100 B of agricultural damage annually, produce novel, highly conserved small sugar-based molecules call ascarosides. Ascarosides play critical roles in nematode development and behavior. We report here that plants recognize these un...

  2. Plant ectoparasitic nematodes prefer roots without their microbial enemies

    NARCIS (Netherlands)

    Piskiewicz, A.M.; Milliano, de M.J.K.; Duyts, H.; Putten, van der W.H.

    2009-01-01

    Root-feeding nematodes are major soil-borne pests in agriculture. In natural ecosystems, their abundance can be strongly controlled by natural enemies. In coastal foredune soil, the abundance of the ectoparasitic nematode Tylenchorhynchus ventralis is controlled by local interactions with soil micro

  3. Rendering the Intractable More Tractable: Tools from Caenorhabditis elegans Ripe for Import into Parasitic Nematodes.

    Science.gov (United States)

    Ward, Jordan D

    2015-12-01

    Recent and rapid advances in genetic and molecular tools have brought spectacular tractability to Caenorhabditis elegans, a model that was initially prized because of its simple design and ease of imaging. C. elegans has long been a powerful model in biomedical research, and tools such as RNAi and the CRISPR/Cas9 system allow facile knockdown of genes and genome editing, respectively. These developments have created an additional opportunity to tackle one of the most debilitating burdens on global health and food security: parasitic nematodes. I review how development of nonparasitic nematodes as genetic models informs efforts to import tools into parasitic nematodes. Current tools in three commonly studied parasites (Strongyloides spp., Brugia malayi, and Ascaris suum) are described, as are tools from C. elegans that are ripe for adaptation and the benefits and barriers to doing so. These tools will enable dissection of a huge array of questions that have been all but completely impenetrable to date, allowing investigation into host-parasite and parasite-vector interactions, and the genetic basis of parasitism.

  4. Steinernema balochiense n. sp. (Rhabditida: Steinernematidae) a new entomopathogenic nematode from Pakistan.

    Science.gov (United States)

    Fayyaz, Shahina; Khanum, Tabassum Ara; Ali, Shaukat; Solangi, Ghulam Sarwar; Gulsher, Mehreen; Javed, Salma

    2015-01-07

    A new species of entomopathogenic nematode (EPN) named Steinernema balochiense n. sp. belonging to the family Steinernematidae was isolated from Psidium guajava L., rhizophere soil samples of Balochistan, Pakistan. This new species belongs to the carpocapsae group. The new species can be separated from other described species by morphological and morphometrics characteristics as well as DNA sequence polymorphisms. This new nematode species is morphologically characterized by features of infective juveniles (IJ) and males. For the IJ average body length was (455; 415-528) µm, distance from anterior end to excretory pore (35; 32-38) µm, pharynx length (90; 85-98) µm, tail length (44.3; 40-51) µm, D% and E% values (39; 36-44) and (80; 70-92), respectively. For male specimens, the diagnostic characters included total body length (1330; 1135-1632) µm, gubernaculum length (44.4; 40-47) µm, D% (43.8; 40-51) and ratio of GS (63.8; 53-75). Morphological diagnostic traits for new species include the presence of a funnel shaped gubernaculum at the proximal end. S. balochiense n. sp. differs from infective stage juveniles of closest species S. nepalense by having 6 ridges vs 7 ridges in the lateral field. Molecular phylogenetic trees based on sequence of ITS-rDNA, D2D3 regions and the mitochondrial 12S rRNA gene supports the description of this nematode isolate as a new species.

  5. A host beetle pheromone regulates development and behavior in the nematode Pristionchus pacificus.

    Science.gov (United States)

    Cinkornpumin, Jessica K; Wisidagama, Dona R; Rapoport, Veronika; Go, James L; Dieterich, Christoph; Wang, Xiaoyue; Sommer, Ralf J; Hong, Ray L

    2014-10-15

    Nematodes and insects are the two most speciose animal phyla and nematode-insect associations encompass widespread biological interactions. To dissect the chemical signals and the genes mediating this association, we investigated the effect of an oriental beetle sex pheromone on the development and behavior of the nematode Pristionchus pacificus. We found that while the beetle pheromone is attractive to P. pacificus adults, the pheromone arrests embryo development, paralyzes J2 larva, and inhibits exit of dauer larvae. To uncover the mechanism that regulates insect pheromone sensitivity, a newly identified mutant, Ppa-obi-1, is used to reveal the molecular links between altered attraction towards the beetle pheromone, as well as hypersensitivity to its paralyzing effects. Ppa-obi-1 encodes lipid-binding domains and reaches its highest expression in various cell types, including the amphid neuron sheath and excretory cells. Our data suggest that the beetle host pheromone may be a species-specific volatile synomone that co-evolved with necromeny.

  6. Additional records of metazoan parasites from Caribbean marine mammals, including genetically identified anisakid nematodes.

    Science.gov (United States)

    Colón-Llavina, Marlene M; Mignucci-Giannoni, Antonio A; Mattiucci, Simonetta; Paoletti, Michela; Nascetti, Giuseppe; Williams, Ernest H

    2009-10-01

    Studies of marine mammal parasites in the Caribbean are scarce. An assessment for marine mammal endo- and ectoparasites from Puerto Rico and the Virgin Islands, but extending to other areas of the Caribbean, was conducted between 1989 and 1994. The present study complements the latter and enhances identification of anisakid nematodes using molecular markers. Parasites were collected from 59 carcasses of stranded cetaceans and manatees from 1994 to 2006, including Globicephala macrorhynchus, Kogia breviceps, Kogia sima, Lagenodelphis hosei, Mesoplodon densirostris, Peponocephala electra, Stenella longirostris, Steno bredanensis, Trichechus manatus. Tursiops truncatus, and Ziphius cavirostris. Sixteen species of endoparasitic helminthes were morphologically identified, including two species of acanthocephalans (Bolbosoma capitatum, Bolbosoma vasculosum), nine species of nematodes (Anisakis sp., Anisakis brevispiculata, Anisakis paggiae, Anisakis simplex, Anisakis typica, Anisakis ziphidarium, Crassicauda anthonyi, Heterocheilus tunicatus, Pseudoterranova ceticola), two species of cestodes (Monorygma grimaldi, Phyllobothrium delphini), and three species of trematodes (Chiorchis groschafti, Pulmonicola cochleotrema, Monoligerum blairi). The nematodes belonging to the genus Anisakis recovered in some stranded animals were genetically identified to species level based on their sequence analysis of mitochondrial DNA (629 bp of mtDNA cox 2). A total of five new host records and six new geographic records are presented.

  7. A mir-231-Regulated Protection Mechanism against the Toxicity of Graphene Oxide in Nematode Caenorhabditis elegans

    Science.gov (United States)

    Yang, Ruilong; Ren, Mingxia; Rui, Qi; Wang, Dayong

    2016-08-01

    Recently, several dysregulated microRNAs (miRNAs) have been identified in organisms exposed to graphene oxide (GO). However, their biological functions and mechanisms of the action are still largely unknown. Here, we investigated the molecular mechanism of mir-231 in the regulation of GO toxicity using in vivo assay system of Caenorhabditis elegans. We found that GO exposure inhibited the expression of mir-231::GFP in multiple tissues, in particular in the intestine. mir-231 acted in intestine to regulate the GO toxicity, and overexpression of mir-231 in intestine caused a susceptible property of nematodes to GO toxicity. smk-1 encoding a homologue to mammalian SMEK functioned as a targeted gene for mir-231, and was also involved in the intestinal regulation of GO toxicity. Mutation of smk-1 gene induced a susceptible property to GO toxicity, whereas the intestinal overexpression of smk-1 resulted in a resistant property to GO toxicity. Moreover, mutation of smk-1 gene suppressed the resistant property of mir-231 mutant to GO toxicity. In nematodes, SMK-1 further acted upstream of the transcriptional factor DAF-16/FOXO in insulin signaling pathway to regulate GO toxicity. Therefore, mir-231 may encode a GO-responsive protection mechanism against the GO toxicity by suppressing the function of the SMK-1 - DAF-16 signaling cascade in nematodes.

  8. Evaluation of soil bioremediation techniques in an aged diesel spill at the Antarctic Peninsula.

    Science.gov (United States)

    de Jesus, Hugo E; Peixoto, Raquel S; Cury, Juliano C; van Elsas, Jan D; Rosado, Alexandre S

    2015-12-01

    Many areas on the Antarctic continent already suffer from the direct and indirect influences of human activities. The main cause of contamination is petroleum hydrocarbons because this compound is used as a source of energy at the many research stations around the continent. Thus, the current study aims to evaluate treatments for bioremediation (biostimulation, bioaugmentation, and bioaugmentation + biostimulation) using soils from around the Brazilian Antarctic Station "Comandante Ferraz" (EACF), King George Island, Antarctic Peninsula. The experiment lasted for 45 days, and at the end of this period, chemical and molecular analyses were performed. Those analyses included the quantification of carbon and nitrogen, denaturing gradient gel electrophoresis (DGGE) analysis (with gradient denaturation), real-time PCR, and quantification of total hydrocarbons and polyaromatics. Molecular tests evaluated changes in the profile and quantity of the rrs genes of archaea and bacteria and also the alkB gene. The influence of the treatments tested was directly related to the type of soil used. The work confirmed that despite the extreme conditions found in Antarctic soils, the bacterial strains degraded hydrocarbons and bioremediation treatments directly influenced the microbial communities present in these soils even in short periods. Although the majority of the previous studies demonstrate that the addition of fertilizer seems to be most effective at promoting bioremediation, our results show that for some conditions, autochthonous bioaugmentation (ABA) treatment is indicated. This work highlights the importance of understanding the processes of recovery of contaminated environments in polar regions because time is crucial to the soil recovery and to choosing the appropriate treatment.

  9. Encouraging Advances Made by Chinese Scientists in Antarctic Research

    Institute of Scientific and Technical Information of China (English)

    Zhang Qingsong

    2003-01-01

    @@ Chinese scientists began involving in the Antarctic research in 1980. As the first step, some 40 Chinese scientists were sent to Antarctic stations of Australia and other countries during the period from 1980 to 1984. Then,China established two Antarctic stations of its own, and purchased an icebreaker, enabling China to carry on its own independent research program both on land and at sea.

  10. Creolina effect on the parasitic nematodes on tobacco crop

    Directory of Open Access Journals (Sweden)

    Ricardo Bemfica Steffen

    2010-06-01

    Full Text Available Tobacco is a culture with great economic importance in the Rio Grande do Sul State, It is usually cultivated in small areas using family work force. The nematodes are organisms that cause damages to the tobacco and limit the development and production. The aim of this work was to evaluate the use of the creolina as measure alternative of nematofauna control. In controlled conditions, the creolina applications solutions at 10 and 20% presented efficiency of 74 and 85% in the nematodes inactivation, respectively. In field conditions, the application of the creolina solution at 10% in revolved soil provided decrease of 50% in the total number of nematodes in the soil and it presented efficiency of 45% in the present nematodes inactivation, showed a great potential in the integrated handling of nematodes in small cultivated areas with tabacum.

  11. Antarctic microfungi as models for exobiology

    Science.gov (United States)

    Onofri, S.; Selbmann, L.; Zucconi, L.; Pagano, S.

    2004-01-01

    Microfungi living in different Antarctic environments are generally well adapted to high stress conditions such as low temperatures, wide thermal fluctuations, high UV irradiance, and low water and nutrients availability; for this reason they could be investigated in order to explore limits of microbial life. Microfungi living in simple cryptoendolithic microbial communities inside the porosity of rocks in the Antarctic Dry Valleys, the closest terrestrial analogue of Mars, are particularly suitable for exobiological studies. Until now studies on exobiology focused mainly on prokaryotes; since cryptoendolithic black meristematic fungi are able to tolerate hard desiccation, high UV exposure, extremely low temperatures and wide thermal fluctuations, they are proposed as the best eukaryotic models for the biological exploration of Mars. Indeed, their adaptive strategies could be crucial as predictive tools in investigating the limits of life.

  12. A simulated Antarctic fast ice ecosystem

    Science.gov (United States)

    Arrigo, Kevin R.; Kremer, James N.; Sullivan, Cornelius W.

    1993-01-01

    A 2D numerical ecosystem model of Antarctic land fast ice is developed to elucidate the primary production with the Antarctic sea ice zone. The physical component employs atmospheric data to simulate congelation ice growth, initial brine entrapment, desalination, and nutrient flux. The biological component is based on the concept of a maximum temperature-dependent algal growth rate which is reduced by limitations imposed from insufficient light or nutrients, as well as suboptimal salinity. Preliminary simulations indicate that, during a bloom, microalgae are able to maintain their vertical position relative to the lower congelation ice margin and are not incorporated into the crystal matrix as the ice sheet thickens. It is inferred that land fast sea ice contains numerous microhabitats that are functionally distinct based upon the unique set of processes that control microalgal growth and accumulation within each.

  13. Total Mercury in Six Antarctic Notothenioid Fishes.

    Science.gov (United States)

    Wintle, Nathan J P; Sleadd, Isaac M; Gundersen, Deke T; Kohl, Kristina; Buckley, Bradley A

    2015-11-01

    We analyzed white muscle samples from six species of Antarctic fish (suborder Notothenioidei) collected in 2011 from McMurdo Sound, Ross Sea, Antarctica, to assess levels of total mercury (THg). Gymnodraco acuticeps and Trematomus bernacchii exhibited the highest concentrations of THg followed by Trematomus pennellii, Trematomus nicolai, Trematomus newnesi and Pagothenia borchgrevinki, (71.3, 53.9±32.1, 45.8±27.3, 37.2±18.6, 35.7±23.6, and 21.9±2.8 ng/g wet weight, respectively). The results from this study suggest that THg has the potential to bioaccumulate from various marine Antarctic ecosystems into biota.

  14. Antarctic Meteorite Classification and Petrographic Database

    Science.gov (United States)

    Todd, Nancy S.; Satterwhite, C. E.; Righter, Kevin

    2011-01-01

    The Antarctic Meteorite collection, which is comprised of over 18,700 meteorites, is one of the largest collections of meteorites in the world. These meteorites have been collected since the late 1970's as part of a three-agency agreement between NASA, the National Science Foundation, and the Smithsonian Institution [1]. Samples collected each season are analyzed at NASA s Meteorite Lab and the Smithsonian Institution and results are published twice a year in the Antarctic Meteorite Newsletter, which has been in publication since 1978. Each newsletter lists the samples collected and processed and provides more in-depth details on selected samples of importance to the scientific community. Data about these meteorites is also published on the NASA Curation website [2] and made available through the Meteorite Classification Database allowing scientists to search by a variety of parameters

  15. Optical Turbulence above the Internal Antarctic Plateau

    CERN Document Server

    Masciadri, E; Hagelin, S; Moigne, P Le; Noilhan, J

    2010-01-01

    The internal antarctic plateau revealed in the last years to be a site with interesting potentialities for the astronomical applications due to the extreme dryness and low temperatures, the typical high altitude of the plateau, the weak level of turbulence in the free atmosphere down to a just few tens of meters from the ground and the thin optical turbulence layer developed at the ground. The main goal of a site testing assessment above the internal antarctic plateau is to characterize the site (optical turbulence and classical meteorological parameters) and to quantify which is the gain we might obtain with respect to equivalent astronomical observations done above mid-latitude sites to support plans for future astronomical facilities. Our group is involved, since a few years, in studies related to the assessment of this site for astronomical applications that include the characterization of the meteorological parameters and optical turbulence provided by general circulation models as well as mesoscale atmo...

  16. Identification of virus and nematode resistance genes in the Chilota Potato Genebank of the Universidad Austral de Chile

    Directory of Open Access Journals (Sweden)

    Marlon López

    2015-09-01

    Full Text Available Potato Genebank of the Universidad Austral de Chile (UACh is an important gene bank in Chile. The accessions collected all over the country possess high genetic diversity, present interesting agronomic and cooking traits, and show resistance to biotic and abiotic stress. A particularly interesting subgroup of the gene bank includes the accessions collected in the South of Chile, the Chilota Potato Genebank. The focus of this study is the identification of virus and nematode resistant genes in potatoes (Solatium tuberosum L., using the RYSC3 and YES3-3B molecular markers. The Potato virus Y(PVY resistance genes Ry adg and Ry sto were identified. Furthermore, the CP60 marker was used to assess the Rx resistance gene that confers resistance to Potato virus X (PVX. In addition, the HC and GRO1-4 markers were utilized to identify the GpaVvrn_QTL and Gro1-4, resistance genes of Globodera pallida and Globodera rostochiensis, respectively. Both G. pallida and G. rostochiensis are Potato Cyst Nematodes (PCN. The plant material used in this study included leaves from 271 accessions of the gene bank. These samples were collected in the field where natural pathogen pressure of potential viruses and diseases exists. ELISA assays were run for field detection of PVY and PVX. However, there have been no previous reports of nematode presence in the plant material. The results herein presented indicate presence of virus and nematode resistance genes in accessions of the Chilota Potato Genebank. In terms of virus resistance, 99 accessions out of the 271 tested possess the Ry adg resistance gene and 17 accessions of these 271 tested have the Ry sto resistance gene. Also, 10 accessions showed positive amplification of the Rxl resistant gene marker. As to nematode resistance, 99 accessions have possible resistance to G. pallida and 54 accessions show potential resistance to G. rostochiensis as detected using the available molecular markers.

  17. Transcriptomic analysis of the rice white tip nematode, Aphelenchoides besseyi (Nematoda: Aphelenchoididae.

    Directory of Open Access Journals (Sweden)

    Feng Wang

    Full Text Available BACKGROUND: The rice white tip nematode Aphelenchoides besseyi, a devastating nematode whose genome has not been sequenced, is distributed widely throughout almost all the rice-growing regions of the world. The aims of the present study were to define the transcriptome of A. besseyi and to identify parasite-related, mortality-related or host resistance-overcoming genes in this nematode. METHODOLOGY AND PRINCIPAL FINDINGS: Using Solexa/Illumina sequencing, we profiled the transcriptome of mixed-stage populations of A. besseyi. A total of 51,270 transcripts without gaps were produced based on high-quality clean reads. Of all the A. besseyi transcripts, 9,132 KEGG Orthology assignments were annotated. Carbohydrate-active enzymes of glycoside hydrolases (GHs, glycosyltransferases (GTs, carbohydrate esterases (CEs and carbohydrate-binding modules (CBMs were identified. The presence of the A. besseyi GH45 cellulase gene was verified by in situ hybridization. Given that 13 unique A. besseyi potential effector genes were identified from 41 candidate effector homologs, further studies of these homologs are merited. Finally, comparative analyses were conducted between A. besseyi contigs and Caenorhabditis elegans genes to look for orthologs of RNAi phenotypes, neuropeptides and peptidases. CONCLUSIONS AND SIGNIFICANCE: The present results provide comprehensive insight into the genetic makeup of A. besseyi. Many of this species' genes are parasite related, nematode mortality-related or necessary to overcome host resistance. The generated transcriptome dataset of A. besseyi reported here lays the foundation for further studies of the molecular mechanisms related to parasitism and facilitates the development of new control strategies for this species.

  18. Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora

    Directory of Open Access Journals (Sweden)

    Shapiro-Ilan David I

    2009-12-01

    Full Text Available Abstract Background The success of a biological control agent depends on key traits, particularly reproductive potential, environmental tolerance, and ability to be cultured. These traits can deteriorate rapidly when the biological control agent is reared in culture. Trait deterioration under laboratory conditions has been widely documented in the entomopathogenic nematode (EPN Heterorhabditis bacteriophora (Hb but the specific mechanisms behind these genetic processes remain unclear. This research investigates the molecular mechanisms of trait deterioration of two experimental lines of Hb, an inbred line (L5M and its original parental line (OHB. We generated transcriptional profiles of two experimental lines of Hb, identified the differentially expressed genes (DEGs and validated their differential expression in the deteriorated line. Results An expression profiling study was performed between experimental lines L5M and OHB of Hb with probes for 15,220 ESTs from the Hb transcriptome. Microarray analysis showed 1,185 DEGs comprising of 469 down- and 716 up-regulated genes in trait deteriorated nematodes. Analysis of the DEGs showed that trait deterioration involves massive changes of the transcripts encoding enzymes involved in metabolism, signal transduction, virulence and longevity. We observed a pattern of reduced expression of enzymes related to primary metabolic processes and induced secondary metabolism. Expression of sixteen DEGs in trait deteriorated nematodes was validated by quantitative reverse transcription-PCR (qRT-PCR which revealed similar expression kinetics for all the genes tested as shown by microarray. Conclusion As the most closely related major entomopathogen to C. elegans, Hb provides an attractive near-term application for using a model organism to better understand interspecies interactions and to enhance our understanding of the mechanisms underlying trait deterioration in biological control agents. This information

  19. Gas chromatography-mass spectrometry analysis of fatty acid profiles of Antarctic and non-Antarctic yeasts.

    Science.gov (United States)

    Bhuiyan, Mohammad; Tucker, David; Watson, Kenneth

    2014-08-01

    The fatty acid profiles of Antarctic (n = 7) and non-Antarctic yeasts (n = 7) grown at different temperatures were analysed by gas chromatography-mass spectrometry. The Antarctic yeasts were enriched in oleic 18:1 (20-60 %), linoleic 18:2 (20-50 %) and linolenic 18:3 (5-40 %) acids with lesser amounts of palmitic 16:0 (Antarctic yeasts (n = 4) were enriched in 18:1 (20-55 %, with R. mucilaginosa at 75-80 %) and 18:2 (10-40 %) with lesser amounts of 16:0 (Antarctic yeasts (enriched in 18:1 and 18:2) and the third to the Antarctic yeasts (enriched in 18:2 and 18:3).

  20. Magnetic anisotropy and porosity of Antarctic chondrites

    OpenAIRE

    Hamano,Yozo/Yomogida,Kiyoshi

    1982-01-01

    Magnetic susceptibility anisotropy and porosity were measured in eleven Antarctic meteorites. These meteorites are ordinary chondrites (H and L type) in various metamorphic stages. Large magnetic anisotropy has been observed in most of the chondrites. The foliation type of the anisotropy, inferred from the shape of the susceptibility ellipsoid indicates that a uniaxial compressional type deformation is responsible for the anisotropy. The degree of the anisotropy and the porosity do not correl...

  1. Soil microorganisms control plant ectoparasitic nematodes in natural coastal foredunes.

    Science.gov (United States)

    Piśkiewicz, Anna M; Duyts, Henk; Berg, Matty P; Costa, Sofia R; van der Putten, Wim H

    2007-06-01

    Belowground herbivores can exert important controls on the composition of natural plant communities. Until now, relatively few studies have investigated which factors may control the abundance of belowground herbivores. In Dutch coastal foredunes, the root-feeding nematode Tylenchorhynchus ventralis is capable of reducing the performance of the dominant grass Ammophila arenaria (Marram grass). However, field surveys show that populations of this nematode usually are controlled to nondamaging densities, but the control mechanism is unknown. In the present study, we first established that T. ventralis populations are top-down controlled by soil biota. Then, selective removal of soil fauna suggested that soil microorganisms play an important role in controlling T. ventralis. This result was confirmed by an experiment where selective inoculation of microarthropods, nematodes and microbes together with T. ventralis into sterilized dune soil resulted in nematode control when microbes were present. Adding nematodes had some effect, whereas microarthropods did not have a significant effect on T. ventralis. Our results have important implications for the appreciation of herbivore controls in natural soils. Soil food web models assume that herbivorous nematodes are controlled by predaceous invertebrates, whereas many biological control studies focus on managing nematode abundance by soil microorganisms. We propose that soil microorganisms play a more important role than do carnivorous soil invertebrates in the top-down control of herbivorous ectoparasitic nematodes in natural ecosystems. This is opposite to many studies on factors controlling root-feeding insects, which are supposed to be controlled by carnivorous invertebrates, parasitoids, or entomopathogenic nematodes. Our conclusion is that the ectoparasitic nematode T. ventralis is potentially able to limit productivity of the dune grass A. arenaria but that soil organisms, mostly microorganisms, usually prevent the

  2. Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil

    NARCIS (Netherlands)

    Foucher, A.L.J.L.; Bongers, A.M.T.; Noble, L.R.; Wilson, M.J.

    2004-01-01

    Soil nematodes are both taxonomically and functionally diverse, respond quickly to soil perturbation and have much potential as indicators of soil health. However, because of the perceived difficulty of identifying nematodes to species level morphologically, they are frequently neglected in soil eco

  3. A Comparison of Three Molecular Markers for the Identification of Populations of Globodera pallida

    OpenAIRE

    Hoolahan, Angelique H.; Blok, Vivian C.; Gibson, Tracey; Dowton, Mark

    2012-01-01

    Potato cyst nematodes cost the potato industry substantial financial losses annually. Through the use of molecular markers, the distribution and infestation routes of these nematodes can be better elucidated, permitting the development of more effective preventative methods. Here we assess the ability of three molecular markers to resolve multiple representatives of five Globodera pallida populations as monophyletic groups. Molecular markers included a region of the rbp-1 gene (an effector), ...

  4. A paleomagnetic study of the Antarctic Peninsula

    Science.gov (United States)

    Poblete, F.; Arriagada, C.; Roperch, P.

    2009-05-01

    In the Paleozoic, South America, South Africa and Antarctica were part of Gondwana. The Weddell Sea began to form at about 146 Ma, after rifting between the Antarctic Peninsula and southernmost South America. Much uncertainty still exists about the geometrical fit and subsequent drift history between Patagonia and Antarctica. Geophysical and geological data which describe the tectonic history are sparsely distributed and often of poor quality. During the last two years we have collected more than 1000 paleomagnetic samples from 70 sites at several localities (King George Island, Robert Island, Yankee Bay, Half Moon Island, Byers Peninsula and Snow Island) from the South Shetland Islands and Anderson Island in the northern tip of Antarctic Peninsula. Our main objective was to provide first-order constraints on latitudinal displacements and the amount of tectonic rotations as an essential test of published tectonic models. Paleomagnetic results were obtained from 50 sites. All samples from sites in volcanic and intrusive rocks have well-defined univectorial magnetizations. Unfortunately, all sites in late Paleozoic sediments have been remagnetized and the magnetizations are often unstable upon thermal demagnetization. Cretaceous and Cenozoic units display very little apparent polar wander. Results from intrusive rocks of expected Jurassic age do not confirm the expected relative rotation betwen the Antarctic Peninsula and East Antarctica. Further radiometric dating are needed to confirm the age of these units.

  5. Antarctic Treaty Summit: Washington, DC (2009)

    Science.gov (United States)

    Berkman, P. A.; Young, O. R.

    2005-12-01

    Advancement in Earth system science and international cooperation have been intertwined with the International Polar Years since 1882. In particular, the 3rd International Polar Year (which was convened as the International Geophysical Year from 1 July 1957 through 31 December 1958) specifically demonstrates the role of science in international policy: Acknowledging the substantial contributions to scientific knowledge resulting from international cooperation in scientific investigation in Antarctica; Convinced that the establishment of a firm foundation for the continuation and development of such cooperation on the basis of freedom of scientific investigation in Antarctica as applied during the International Geophysical Year accords with the interests of science and the progress of all mankind; Preamble, 1959 Antarctic Treaty To commemorate the 50th anniversary of the 1959 Antarctic Treaty and to explore the complexities of the science-policy relationship through the lens of a well-constrained case study, an international and interdisciplinary Antarctic Treaty Summit is being planned for 2009 in Washington, DC in conjunction with the International Polar Year 2007-08 (http://www.ipy.org).

  6. Antarctic Meteorite Classification and Petrographic Database Enhancements

    Science.gov (United States)

    Todd, N. S.; Satterwhite, C. E.; Righter, K.

    2012-01-01

    The Antarctic Meteorite collection, which is comprised of over 18,700 meteorites, is one of the largest collections of meteorites in the world. These meteorites have been collected since the late 1970 s as part of a three-agency agreement between NASA, the National Science Foundation, and the Smithsonian Institution [1]. Samples collected each season are analyzed at NASA s Meteorite Lab and the Smithsonian Institution and results are published twice a year in the Antarctic Meteorite Newsletter, which has been in publication since 1978. Each newsletter lists the samples collected and processed and provides more in-depth details on selected samples of importance to the scientific community. Data about these meteorites is also published on the NASA Curation website [2] and made available through the Meteorite Classification Database allowing scientists to search by a variety of parameters. This paper describes enhancements that have been made to the database and to the data and photo acquisition process to provide the meteorite community with faster access to meteorite data concurrent with the publication of the Antarctic Meteorite Newsletter twice a year.

  7. Antarctic isolation: immune and viral studies

    Science.gov (United States)

    Tingate, T. R.; Lugg, D. J.; Muller, H. K.; Stowe, R. P.; Pierson, D. L.

    1997-01-01

    Stressful environmental conditions are a major determinant of immune reactivity. This effect is pronounced in Australian National Antarctic Research Expedition populations exposed to prolonged periods of isolation in the Antarctic. Alterations of T cell function, including depression of cutaneous delayed-type hypersensitivity responses and a peak 48.9% reduction of T cell proliferation to the mitogen phytohaemagglutinin, were documented during a 9-month period of isolation. T cell dysfunction was mediated by changes within the peripheral blood mononuclear cell compartment, including a paradoxical atypical monocytosis associated with altered production of inflammatory cytokines. There was a striking reduction in the production by peripheral blood mononuclear cells of the predominant pro-inflammatory monokine TNF-alpha and changes were also detected in the production of IL-1, IL-2, IL-6, IL-1ra and IL-10. Prolonged Antarctic isolation is also associated with altered latent herpesvirus homeostasis, including increased herpesvirus shedding and expansion of the polyclonal latent Epstein-Barr virus-infected B cell population. These findings have important long-term health implications.

  8. Mirror seeing of the Antarctic survey telescope

    Institute of Scientific and Technical Information of China (English)

    ZHANG Kaiyuan; LI Zhengyang; YUAN Xiangyan; PEI Chong

    2014-01-01

    Site testing results indicate that Antarctic Dome A is an excellent ground-based astronomical site suitable for observations ranging from visible to infrared wavelengths. However, the harsh environment in Antarctica, especially the very low temperature and atmospheric pressure, always produces frost on the telescopes’ mirrors, which are exposed to the air. Since the Dome A site is still unattended, the Antarctic telescope tubes are always designed to be filled with dry nitrogen, and the outer surfaces of the optical system are heated by an indium-tin oxide thin film. These precautions can prevent the optical surfaces from frosting over, but they degrade the image quality by introducing additional mirror seeing. Based on testing observations of the second Antarctic Survey Telescope (AST3-2) in the Mohe site in China, mirror seeing resulting from the heated aspheric plate has been measured using micro-thermal sensors. Results comparing the real-time atmospheric seeing monitored by the Differential Image Motion Monitor and real-time examinations of image quality agree well.

  9. Update on terrestrial ages of Antarctic meteorites

    Energy Technology Data Exchange (ETDEWEB)

    Welten, K C; Nishiizumi, K; Caffee, M W

    2000-01-14

    Terrestrial ages of Antarctic meteorites are one of the few parameters that will help us to understand the meteorite concentration mechanism on blue-ice fields. Traditionally, terrestrial ages were determined on the basis of {sup 36}Cl in the metal phase, which has an uncertainty of about 70 ky. For young meteorites (< 40 ky), the terrestrial age is usually and most accurately determined using {sup 14}C in the stone phase. In recent years two methods have been developed which are independent of shielding effects, the {sup 10}Be-{sup 36}Cl/{sup 10}Be method and the {sup 41}Ca/{sup 36}Cl method. These methods have reduced the typical uncertainties in terrestrial ages by a factor of 2, to about 30 ky. The {sup 10}Be-{sup 36}Cl/{sup 10}Be method is quite dependent on the exposure age, which is unknown for most Antarctic meteorites. The authors therefore also attempt to use the relation between {sup 26}Al and {sup 36}Cl/{sup 26}Al to derive a terrestrial age less dependent on the exposure age. The authors have measured the concentrations of cosmogenic {sup 10}Be, {sup 26}Al and {sup 36}Cl in the metal phase of {approximately} 70 Antarctic meteorites, from more than 10 different ice-fields, including many new ones. They then discuss the trends in terrestrial ages of meteorites from different ice-fields.

  10. Unraveling the intraguild competition between Oscheius spp. nematodes and entomopathogenic nematodes: Implications for their natural distribution in Swiss agricultural soils.

    Science.gov (United States)

    Campos-Herrera, Raquel; Půža, Vladimir; Jaffuel, Geoffrey; Blanco-Pérez, Rubén; Čepulytė-Rakauskienė, Rasa; Turlings, Ted C J

    2015-11-01

    Entomopathogenic nematodes (EPN) are excellent biological control agents to fight soil-dwelling insect pests. In a previous survey of agricultural soils of Switzerland, we found mixtures of free-living nematodes (FLN) in the genus Oscheius, which appeared to be in intense competition with EPN. As this may have important implications for the long-term persistence of EPN, we studied this intraguild competition in detail. We hypothesized that (i) Oscheius spp. isolates act as scavengers rather than entomopathogens, and (ii) cadavers with relatively small numbers of EPN are highly suitable resources for Oscheius spp. reproduction. To study this, we identified Oscheius spp. isolated from Swiss soils, quantified the outcome of EPN/Oscheius competition in laboratory experiments, developed species-specific primers and probe for quantitative real-time PCR, and evaluated their relative occurrence in the field in the context of the soil food web. Molecular analysis (ITS/D2D3) identified MG-67/MG-69 as Oscheius onirici and MG-68 as O. tipulae (Dolichura-group). Oscheius spp. indeed behaved as scavengers, reproducing in ∼64% of frozen-killed cadavers from controlled experiments. Mixed infection in the laboratory by Oscheius spp. with low (3 IJs) or high (20 IJs) initial EPN numbers revealed simultaneous reproduction in double-exposed cadavers which resulted in a substantial reduction in the number of EPN progeny from the cadaver. This effect depended on the number of EPN in the initial inoculum and differed by EPN species; Heterorhabditis megidis was better at overcoming competition. This study reveals Oscheius spp. as facultative kleptoparasites that compete with EPN for insect cadavers. Using real-time qPCR, we were able to accurately quantify this strong competition between FLN and EPN in cadavers that were recovered after soil baiting (∼86% cadavers with >50% FLN production). The severe competition within the host cadavers and the intense management of the soils in

  11. Mining the secretome of root-knot nematodes for cell wall modifying proteins

    NARCIS (Netherlands)

    Roze, E.H.A.

    2008-01-01

    The products of parasitism genes in nematodes must be secreted to reach their targets at the nematode-plant interface. These nematode secretory proteins are therefore recognised to play an important role in the nematode-plant interaction and as a result have been subject of intense study for years.

  12. The ARM West Antarctic Radiation Experiment (AWARE)

    Science.gov (United States)

    Lubin, Dan; Bromwich, David; Vogelmann, Andrew; Verlinde, Johannes; Russell, Lynn

    2016-04-01

    West Antarctica is one of the most rapidly warming regions on Earth, and its changing climate in both atmosphere and ocean is linked to loss of Antarctic ice mass and global sea level rise. The specific mechanisms for West Antarctic Ice Sheet (WAIS) warming are not fully understood, but are hypothesized to involve linkage between moisture from Southern Ocean storm tracks and the surface energy balance over the WAIS, and related teleconnections with subtropical and tropical meteorology. This present lack of understanding has motivated a climate science and cloud physics campaign jointly supported by the US National Science Foundation (NSF) and Department of Energy (DOE), called the Atmospheric Radiation Measurement Program (ARM) West Antarctic Radiation Experiment (AWARE). The DOE's second ARM Mobile Facility (AMF2) was deployed to McMurdo Station on Ross Island in November 2015 and will operate through December 2016. The AMF2 includes (1) cloud research radars, both scanning and zenith, operating in the Ka- and X-bands, (2) high spectral resolution and polarized micropulse lidars, and (3) a suite of shortwave and longwave broadband and spectral radiometers. A second suite of instruments is deployed at the WAIS Divide Ice Camp on the West Antarctic plateau during December 2015 and January 2016. The WAIS instrument suite provides (1) measurement of all surface energy balance components, (2) a polarized micropulse lidar and shortwave spectroradiometer, (3) microwave total water column measurement, and (4) four times daily rawinsonde launches which are the first from West Antarctica since 1967. There is a direct linkage between the WAIS instrument suite and the AMF2 at McMurdo, in that air masses originating in Southern Ocean storm tracks that are driven up over the WAIS often subsequently descend over the Ross Ice Shelf and arrive at Ross Island. Preliminary data are already illustrating the prevalence of mixed-phase clouds and their role in the surface energy balance

  13. Nematode Locomotion in Unconfined and Confined Fluids

    CERN Document Server

    Bilbao, Alejandro; Vanapalli, Siva; Blawzdziewicz, Jerzy

    2013-01-01

    The millimeter-long soil-dwelling nematode {\\it C. elegans} propels itself by producing undulations that propagate along its body and turns by assuming highly curved shapes. According to our recent study [PLoS ONE \\textbf{7}, e40121 (2012)] all these postures can be accurately described by a piecewise-harmonic-curvature (PHC) model. We combine this curvature-based description with highly accurate hydrodynamic bead models to evaluate the normalized velocity and turning angles for a worm swimming in an unconfined fluid and in a parallel-wall cell. We find that the worm moves twice as fast and navigates more effectively under a strong confinement, due to the large transverse-to-longitudinal resistance-coefficient ratio resulting from the wall-mediated far-field hydrodynamic coupling between body segments. We also note that the optimal swimming gait is similar to the gait observed for nematodes swimming in high-viscosity fluids. Our bead models allow us to determine the effects of confinement and finite thickness...

  14. Geoethical Approach to Antarctic Subglacial Lakes Exploration

    Science.gov (United States)

    Talalay, Pavel; Markov, Alexey; Sysoev, Mikhail

    2014-05-01

    Antarctic subglacial aquatic environment have become of great interest to the science community because they may provide unique information about microbial evolution, the past climate of the Earth, and the formation of the Antarctic ice sheet. Nowadays it is generally recognized that a vast network of lakes, rivers, and streams exists thousands of meters beneath Antarctic Ice Sheets. Up to date only four boreholes accessed subglacial aquatic system but three of them were filled with high-toxic drilling fluid, and the subglacial water was contaminated. Two recent exploration programs proposed by UK and USA science communities anticipated direct access down to the lakes Ellsworth and Whillans, respectively, in the 2012/2013 Antarctic season. A team of British scientists and engineers engaged in the first attempt to drill into Lake Ellsworth but failed. US research team has successfully drilled through 800 m of Antarctic ice to reach a subglacial lake Whillans and retrieve water and sediment samples. Both activities used hot-water drilling technology to access lakes. Hot water is considered by the world science community as the most clean drilling fluid medium from the present point of view but it cannot solve environmental problems in total because hot-water even when heated to 90 °C, filtered to 0.2 μm, and UV treated at the surface could pick up microorganisms from near-surface snow and circulate them in great volume through the borehole. Another negative impact of hot-water circulation medium is thermal pollution of subglacial water. The new approach to Antarctic subglacial lakes exploration is presented by sampling technology with recoverable autonomous sonde which is equipped by two hot-points with heating elements located on the bottom and top sides of the sonde. All down-hole sonde components will be sterilized by combination of chemical wash, HPV and UV sterilization prior using. At the beginning of the summer season sonde is installed on the surface of the

  15. Methane isotope records from Antarctic firn air

    Science.gov (United States)

    Sowers, T. A.; Battle, M.

    2007-12-01

    The earth's climate is directly influenced by changes in the atmospheric loading of trace "greenhouse" gases. Methane is an important greenhouse gas whose atmospheric concentration has doubled over the last century as a result of various anthropogenic activities. Understanding the methane cycle in the recent past is a compelling scientific problem because increasing methane levels in the modern atmosphere will contribute to predicted future warming. The only source of air that allows us to study the long-term cycles of these gases is found in the trapped gases in ice cores and the interstitial pore spaces in firn from the central portions of Greenland and Antarctica. Firn air samples, retrieved from the South Pole in 1995 and 2001, were analyzed for δ13CH4. In December of 2005, another suite of firn air samples was recovered from the new US deep coring site located along the west Antarctic divide (WAIS D) which were analyzed for both δ13C and δ D of CH4. In general, replicate flasks were sampled from each depth from two separate drillings each year. The precision of the δ13C and δ D analyses is generally better than ± 0.2‰ and 2‰, respectively, with surface values in good agreement with NOAA (INSTAAR) biweekly flask measurements from South Pole. In all cases, δ13C and δD values decrease gradually with depth below the convective zone. However, these isotopes and CH4 mixing ratios decline sharply below the "lock-in" depth. The measured firn air profiles are primarily the result of three factors. First, tropospheric changes drive compositional changes in the near-surface convective layer that are subsequently mixed downward due to bulk air-movement within the shallow firn. Secondly, gases are mixed below the convective zone solely by molecular diffusion, leading to the gradual downward propagation of the compositional changes in the convective layer. Finally, differential gravitational settling causes the heavier atmospheric constituents (both elemental

  16. 植物抗线虫基因与抗性机理研究进展%Advances in genes and mechanisms resistance to nematodes in plants

    Institute of Scientific and Technical Information of China (English)

    叶德友; 陈劲枫

    2012-01-01

    植物寄生线虫是严重危害农业生产的一类重要病原生物,对全球作物产量造成重大损失.抗线虫基因在植物抗线虫反应中发挥重要作用,发掘抗线虫基因并培育抗线虫品种是防治线虫病害的一条有效途径.抗线虫基因的定位与克隆对解析植物抗线虫性的分子机理做出了巨大贡献,明确线虫与寄主植物之间的互作关系及抗线虫机制,可以为制定和采取更加有效的防控策略提供借鉴.%Plant parasitic nematodes are important pathogens causing significant economic losses to crops all over the world. Nematode-resistant genes in plants play an important role against nematodes. The effective measure to control the pests is to investigate genes and screen varieties resistant to nematodes. Mapping and cloning of nema-tode-resistant genes have made a great contribution to clarifying molecular mechanisms involved in plant resistance to nematodes. Underlying interaction between nematodes and plants and its resistance mechanisms are of great interest, which can be helpful for making a more effective strategy for nematode management.

  17. DISTRIBUTION OF ENTOMOPATHOGENIC NEMATODES IN LOWER NORTHERN THAILAND.

    Science.gov (United States)

    Vitta, Apichat; Yimthin, Thatcha; Fukruksa, Chamaiporn; Wongpeera, Wichuda; Yotpanya, Waranan; Polseela, Raxsina; Thanwisai, Aunchalee

    2015-07-01

    Entomopathogenic nematodes (EPNs) are used successfully for biological control of subterranean larval pests leading to reduced environmental contamination if chemical control measures are employed. Their diversity and distribution in Thailand are unclear, so the present study sought to obtain a better understanding these EPN populations in the lower northern region of Thailand. We collected 930 soil samples from 186 sites of Kamphaeng Phet, Nakhon Sawan, Phetchabun, Phichit, Phitsanulok, Sukhothai, Tak, Uthai Thani, and Uttaradit Provinces, Thailand from December 2011 to November 2012. Galleria mellonella was used as host for isolating and propagating EPNs. Seventy soil samples (7.5%) yielded EPNs of two genera, Steinernema (3.0%) and Heterorhabditis (4.5%). The majority of the isolated EPNs were found in loam at 26°C-33°C and pH values of 5.0-7.0. Molecular identification from partial 28S rDNA sequences revealed S. websteri, isolated from soil samples from Nakhon Sawan and Uthai Thani. Phylogenetic analysis of these EPNs showed they are closely related to S. websteri JC1032. The identification that S. websteri was the predominant EPN should enable its application for biological control in the local prevailing soil conditions.

  18. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes.

    Science.gov (United States)

    Near, Thomas J; Dornburg, Alex; Kuhn, Kristen L; Eastman, Joseph T; Pennington, Jillian N; Patarnello, Tomaso; Zane, Lorenzo; Fernández, Daniel A; Jones, Christopher D

    2012-02-28

    The Southern Ocean around Antarctica is among the most rapidly warming regions on Earth, but has experienced episodic climate change during the past 40 million years. It remains unclear how ancient periods of climate change have shaped Antarctic biodiversity. The origin of antifreeze glycoproteins (AFGPs) in Antarctic notothenioid fishes has become a classic example of how the evolution of a key innovation in response to climate change can drive adaptive radiation. By using a time-calibrated molecular phylogeny of notothenioids and reconstructed paleoclimate, we demonstrate that the origin of AFGP occurred between 42 and 22 Ma, which includes a period of global cooling approximately 35 Ma. However, the most species-rich lineages diversified and evolved significant ecological differences at least 10 million years after the origin of AFGPs, during a second cooling event in the Late Miocene (11.6-5.3 Ma). This pattern indicates that AFGP was not the sole trigger of the notothenioid adaptive radiation. Instead, the bulk of the species richness and ecological diversity originated during the Late Miocene and into the Early Pliocene, a time coincident with the origin of polar conditions and increased ice activity in the Southern Ocean. Our results challenge the current understanding of the evolution of Antarctic notothenioids suggesting that the ecological opportunity that underlies this adaptive radiation is not linked to a single trait, but rather to a combination of freeze avoidance offered by AFGPs and subsequent exploitation of new habitats and open niches created by increased glacial and ice sheet activity.

  19. Purification and characterization of cold-adapted beta-agarase from an Antarctic psychrophilic strain

    Directory of Open Access Journals (Sweden)

    Jiang Li

    2015-09-01

    Full Text Available An extracellular β-agarase was purified from Pseudoalteromonas sp. NJ21, a Psychrophilic agar-degrading bacterium isolated from Antarctic Prydz Bay sediments. The purified agarase (Aga21 revealed a single band on sodium dodecyl sulfate-polyacrylamide gel electrophoresis, with an apparent molecular weight of 80 kDa. The optimum pH and temperature of the agarase were 8.0 and 30 °C, respectively. However, it maintained as much as 85% of the maximum activities at 10 °C. Significant activation of the agarase was observed in the presence of Mg2+, Mn2+, K+; Ca2+, Na+, Ba2+, Zn2+, Cu2+, Co2+, Fe2+, Sr2+ and EDTA inhibited the enzyme activity. The enzymatic hydrolyzed product of agar was characterized as neoagarobiose. Furthermore, this work is the first evidence of cold-adapted agarase in Antarctic psychrophilic bacteria and these results indicate the potential for the Antarctic agarase as a catalyst in medicine, food and cosmetic industries.

  20. Effects of capability for dispersal on the evolution of diversity in Antarctic benthos.

    Science.gov (United States)

    Thatje, Sven

    2012-10-01

    The likelihood of marine invertebrates to maintain large geographic ranges is widely dependent on the ability of their early ontogenetic stages to disperse over long distances. Marine benthic invertebrates inhabiting the cold-stenothermal environment of the Southern Ocean are known for their overall reduced number of pelagic larvae, or drifting stages of any kind, when compared with organisms elsewhere in the sea. The diversity of organisms thriving in Antarctic waters is the result of evolution in situ and of the intrusion of species from surrounding seas. The reasons for a high level of endemism and a stunning diversity of benthic invertebrates found today are frequently discussed in the literature, but the mechanisms whereby diversity has been controlled over time remain largely theoretical. Here, I suggest that, indeed, early life-history patterns play a key role in defining the radiation and the speciation potential of Antarctic benthic invertebrates. In arguing this case, I synthesize the growing body of molecular studies on population connectivity in Antarctic benthic invertebrates, and compare this information with knowledge of their life histories and biogeography. I conclude that differences in early life-history patterns are key to the resilience potential of species in response to late Cenozoic glacial periods and propose that there is a direct relationship between rate of speciation and the ability of taxa to disperse.

  1. Proteomic Alterations of Antarctic Ice Microalga Chlamydomonas sp. Under Low-Temperature Stress

    Institute of Scientific and Technical Information of China (English)

    Guang-Feng Kan; Jin-Lai Miao; Cui-Juan Shi; Guang-You Li

    2006-01-01

    Antarctic ice microalga can survive and thrive in cold channels or pores in the Antarctic ice layer. In order to understand the adaptive mechanisms to low temperature, in the present study we compared two-dimensional polyacrylamide gel electrophoresis (2-DE) profiles of normal and low temperature-stressed Antarctic ice microalga Chlamydomonas sp. cells. In addition, new protein spots induced by low temperature were identified with peptide mass fingerprinting based on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and database searching. Well-resolved and reproducible 2-DE patterns of both normal and low temperature-stressed cells were acquired. A total of 626 spots was detected in control cells and 652 spots were detected in the corresponding low temperature-stressed cells. A total of 598 spots was matched between normal and stressed cells. Two newly synthesized proteins (a and b) in low temperature-stressed cells were characterized. Protein spot A (53 kDa, pI 6.0) was similar to isopropylmalate/homocitrate/citramalate synthases, which act in the transport and metabolism of amino acids. Protein spot b (25 kDa, pI 8.0) was related to glutathione S-transferase, which functions as a scavenger of active oxygen, free radicals, and noxious metabolites. The present study is valuable for the application of ice microalgae, establishing an ice microalga Chlamydomonas sp. proteome database, and screening molecular biomarkers for further studies.

  2. A reversal of fortunes: climate change 'winners' and 'losers' in Antarctic Peninsula penguins.

    Science.gov (United States)

    Clucas, Gemma V; Dunn, Michael J; Dyke, Gareth; Emslie, Steven D; Naveen, Ron; Polito, Michael J; Pybus, Oliver G; Rogers, Alex D; Hart, Tom

    2014-06-12

    Climate change is a major threat to global biodiversity. Antarctic ecosystems are no exception. Investigating past species responses to climatic events can distinguish natural from anthropogenic impacts. Climate change produces 'winners', species that benefit from these events and 'losers', species that decline or become extinct. Using molecular techniques, we assess the demographic history and population structure of Pygoscelis penguins in the Scotia Arc related to climate warming after the Last Glacial Maximum (LGM). All three pygoscelid penguins responded positively to post-LGM warming by expanding from glacial refugia, with those breeding at higher latitudes expanding most. Northern (Pygoscelis papua papua) and Southern (Pygoscelis papua ellsworthii) gentoo sub-species likely diverged during the LGM. Comparing historical responses with the literature on current trends, we see Southern gentoo penguins are responding to current warming as they did during post-LGM warming, expanding their range southwards. Conversely, Adélie and chinstrap penguins are experiencing a 'reversal of fortunes' as they are now declining in the Antarctic Peninsula, the opposite of their response to post-LGM warming. This suggests current climate warming has decoupled historic population responses in the Antarctic Peninsula, favoring generalist gentoo penguins as climate change 'winners', while Adélie and chinstrap penguins have become climate change 'losers'.

  3. Reaching for the Horizon: Enabling 21st Century Antarctic Science

    Science.gov (United States)

    Rogan-Finnemore, M.; Kennicutt, M. C., II; Kim, Y.

    2015-12-01

    The Council of Managers of National Antarctic Programs' (COMNAP) Antarctic Roadmap Challenges(ARC) project translated the 80 highest priority Antarctic and Southern Ocean scientific questionsidentified by the community via the SCAR Antarctic Science Horizon Scan into the highest prioritytechnological, access, infrastructure and logistics needs to enable the necessary research to answer thequestions. A workshop assembled expert and experienced Antarctic scientists and National AntarcticProgram operators from around the globe to discern the highest priority technological needs includingthe current status of development and availability, where the technologies will be utilized in the Antarctic area, at what temporal scales and frequencies the technologies will be employed,and how broadly applicable the technologies are for answering the highest priority scientific questions.Secondly the logistics, access, and infrastructure requirements were defined that are necessary todeliver the science in terms of feasibility including cost and benefit as determined by expected scientific return on investment. Finally, based on consideration of the science objectives and the mix oftechnologies implications for configuring National Antarctic Program logistics capabilities andinfrastructure architecture over the next 20 years were determined. In particular those elements thatwere either of a complexity, requiring long term investments to achieve and/or having an associated cost that realistically can only (or best) be achieved by international coordination, planning and partnerships were identified. Major trends (changes) in logistics, access, and infrastructure requirements were identified that allow for long-term strategic alignment of international capabilities, resources and capacity. The outcomes of this project will be reported.

  4. Antarctic bacteria inhibit growth of foodborne microorganisms at low temperatures.

    NARCIS (Netherlands)

    A.C. O'Brien; R. Sharp; N.J. Russell; S. Roller

    2004-01-01

    The aim of this study was to identify Antarctic microorganisms with the ability to produce cold-active antimicrobial compounds with potential for use in chilled food preservation. Colonies (4496) were isolated from 12 Antarctic soil samples and tested against Listeria innocua, Pseudomonas fragi and

  5. The distribution of Fe in the Antarctic Circumpolar Current

    NARCIS (Netherlands)

    Löscher, B.M.; Baar, H.J.W. de; Jong, J.T.M. de; Veth, C.; Dehairs, F.

    1997-01-01

    The large-scale distributions of dissolved and total Fe in surface and deep waters of the Antarctic Circumpolar Current exhibit strong relationships with hydrography and biological processes. The mean dissolved Fe concentrations are low in surface waters of the Antarctic Circumpolar Current (0.31–0.

  6. Biological studies in the Antarctic waters: A review

    Digital Repository Service at National Institute of Oceanography (India)

    Dhargalkar, V.K.

    stream_size 12 stream_content_type text/plain stream_name Proc_Workshop_Antarct_Stud_1990_407.pdf.txt stream_source_info Proc_Workshop_Antarct_Stud_1990_407.pdf.txt Content-Encoding ISO-8859-1 Content-Type text/plain; charset...

  7. Ice core reconstruction of Antarctic climate change and implications

    OpenAIRE

    Mayewski,Paul Andrew

    2012-01-01

    Antarctica is the Earth’s largest environmental library for ice cores. Examples of the scientific fin-dings of the 21-nation consortium called the International Trans Antarctic Scientific Expedition (ITASE) under the auspices of the Scientific Committee for Antarctic Research (SCAR) are presented with special emphasis on the value of these records in reconstructing atmospheric circulation over Antarctica and the Southern Ocean.

  8. Challenges to the Future - Conservation of the Antarctic

    NARCIS (Netherlands)

    Chown, S.L.; Lee, J.E.; Hughes, K.A.; Barnes, J.; Bergstrom, D.M.; Convey, P.; Cowan, D.A.; Crosbie, K.; Dyer, G.; Frenot, Y.; Grant, S.M.; Herr, D.; Kennicutt, M.C.; Lamers, M.A.J.; Murray, A.; Possingham, H.P.; Reid, K.; Riddle, M.J.; Ryan, P.G.; Sanson, L.; Shaw, J.D.; Sparrow, M.D.; Summerhayes, C.; Terauds, A.; Wall, D.H.

    2012-01-01

    The Antarctic Treaty System, acknowledged as a successful model of cooperative regulation of one of the globe's largest commons (1), is under substantial pressure. Concerns have been raised about increased stress on Antarctic systems from global environmental change and growing interest in the regio

  9. 77 FR 31044 - Permits Issued Under the Antarctic Conservation Act

    Science.gov (United States)

    2012-05-24

    ... No: 2012-12616] NATIONAL SCIENCE FOUNDATION Permits Issued Under the Antarctic Conservation Act AGENCY: National Science Foundation. ACTION: Notice of permits issued under the Antarctic Conservation of 1978, Public Law 95-541. SUMMARY: The National Science Foundation (NSF) is required to publish...

  10. Transcriptome of the Antarctic brooding gastropod mollusc Margarella antarctica.

    Science.gov (United States)

    Clark, Melody S; Thorne, Michael A S

    2015-12-01

    454 RNA-Seq transcriptome data were generated from foot tissue of the Antarctic brooding gastropod mollusc Margarella antarctica. A total of 6195 contigs were assembled de novo, providing a useful resource for researchers with an interest in Antarctic marine species, phylogenetics and mollusc biology, especially shell production.

  11. Suppression of plant parasitic nematodes in the chinampa agricultural soils.

    Science.gov (United States)

    Zuckerman, B M; Dicklow, M B; Coles, G C; Garcia-E, R; Marban-Mendoza, N

    1989-06-01

    Soil from the chinampa agricultural system in the Valley of Mexico suppressed damage by plant-parasitic nematodes to tomatoes and beans in greenhouse and growth chamber trials. Sterilization of the chinampa soil resulted in a loss of the suppressive effect, thereby indicating that one or more biotic factors were responsible for the low incidence of nematode damage. Nine organisms were isolated from chinampa soil, which showed antinematodal properties in culture. Naturally occurring populations of plant-parasitic nematodes were of lower incidence in chinampa soil than in Chapingo soil.

  12. Plant nematodes in South Africa. 11. Checklist of plant nematodes of the protected areas of KwaZulu-Natal

    Directory of Open Access Journals (Sweden)

    Mariette Marais

    2013-03-01

    Full Text Available Nematodes are some of the most abundant soil organisms and are an essential part of soil ecology. These organisms are used as indicator organisms and can be linked to soil health. Biological collections contain vast amounts of data, with the National Collection of Nematodes housed at the Plant Protection Research Institute, Agricultural Research Council being no different. During the digitising of the collection a number of unpublished records of plant nematodes reported from protected areas in KwaZulu-Natal were found in the South African Plant-Parasitic Nematode Survey database. A total of 222 plant nematode species belonging to 39 genera were reported from the province, with only 94 of these species reported from the protected areas and 172 and 159 species reported from uncultivated (outside the protected areas and cultivated areas, respectively. Only nine species, Criconema silvum, Criconema talanum, Helicotylenchus marethae, Ogma dracomontanum, Ogma louisi, Ogma ueckermanni, Paralongidorus deborae, Trichodorus rinae and Xiphinemella marindae were described from protected areas, whilst O. dracomontanum, P. deborae and T. rinae were subsequently also reported from other provinces.Conservation implications: A higher degree of diversity of nematodes was observed in the unprotected areas of the province. The observation suggests that nematode fauna, and by implication also other invertebrates, are not adequately protected.

  13. Detection and quantification of root-knot nematode (Meloidogyne javanica), lesion nematode (Pratylenchus zeae) and dagger nematode (Xiphinema elongatum) parasites of sugarcane using real-time PCR.

    Science.gov (United States)

    Berry, Shaun D; Fargette, Mireille; Spaull, Vaughan W; Morand, Serge; Cadet, Patrice

    2008-06-01

    A number of different plant parasitic nematode species are found associated with sugarcane in South Africa. Of these, the root-knot nematode (Meloidogyne javanica), the lesion nematode (Pratylenchus zeae) and the dagger nematode (Xiphinema elongatum) are potentially the most damaging pests. Identification and enumeration of the number of these nematodes are necessary for providing advice to farmers as well as studying the effects of various treatments in field and glasshouse trials. We report on the development, use, and extent of specificity of three sets of primers, for M. javanica, P. zeae and X. elongatum, and on tests to detect and quantify the number of these nematodes in soil samples using SYBR Green I dye and real-time PCR technology. Amplicons from the three target species (obtained with their respective primer sets) are discernible in size by gel electrophoresis (380bp for M. javanica, 250bp for P. zeae and 500bp for X. elongatum). Also, these amplicons have characteristic melting temperatures of 83.8 degrees C (M. javanica), 86.6 degrees C (P. zeae) and 86.1 degrees C (X. elongatum). Investigations into multiplex reactions found competition between species with M. javanica competing with P. zeae and X. elongatum. Subsequent single tube (simplex) assays, enabled the construction of calibration curves for each of the three species. These were then used for quantification of the numbers of each of these species in nematode samples extracted from the field, with a high (R2=0.83) and significant positive correlation between real-time PCR and counts performed with microscopy.

  14. Exploring the use of cytochrome oxidase c subunit 1 (COI for DNA barcoding of free-living marine nematodes.

    Directory of Open Access Journals (Sweden)

    Sofie Derycke

    Full Text Available BACKGROUND: The identification of free-living marine nematodes is difficult because of the paucity of easily scorable diagnostic morphological characters. Consequently, molecular identification tools could solve this problem. Unfortunately, hitherto most of these tools relied on 18S rDNA and 28S rDNA sequences, which often lack sufficient resolution at the species level. In contrast, only a few mitochondrial COI data are available for free-living marine nematodes. Therefore, we investigate the amplification and sequencing success of two partitions of the COI gene, the M1-M6 barcoding region and the I3-M11 partition. METHODOLOGY: Both partitions were analysed in 41 nematode species from a wide phylogenetic range. The taxon specific primers for the I3-M11 partition outperformed the universal M1-M6 primers in terms of amplification success (87.8% vs. 65.8%, respectively and produced a higher number of bidirectional COI sequences (65.8% vs 39.0%, respectively. A threshold value of 5% K2P genetic divergence marked a clear DNA barcoding gap separating intra- and interspecific distances: 99.3% of all interspecific comparisons were >0.05, while 99.5% of all intraspecific comparisons were <0.05 K2P distance. CONCLUSION: The I3-M11 partition reliably identifies a wide range of marine nematodes, and our data show the need for a strict scrutiny of the obtained sequences, since contamination, nuclear pseudogenes and endosymbionts may confuse nematode species identification by COI sequences.

  15. Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes.

    Directory of Open Access Journals (Sweden)

    Kevin Lebrigand

    2016-05-01

    Full Text Available Drechmeria coniospora is an obligate fungal pathogen that infects nematodes via the adhesion of specialized spores to the host cuticle. D. coniospora is frequently found associated with Caenorhabditis elegans in environmental samples. It is used in the study of the nematode's response to fungal infection. Full understanding of this bi-partite interaction requires knowledge of the pathogen's genome, analysis of its gene expression program and a capacity for genetic engineering. The acquisition of all three is reported here. A phylogenetic analysis placed D. coniospora close to the truffle parasite Tolypocladium ophioglossoides, and Hirsutella minnesotensis, another nematophagous fungus. Ascomycete nematopathogenicity is polyphyletic; D. coniospora represents a branch that has not been molecularly characterized. A detailed in silico functional analysis, comparing D. coniospora to 11 fungal species, revealed genes and gene families potentially involved in virulence and showed it to be a highly specialized pathogen. A targeted comparison with nematophagous fungi highlighted D. coniospora-specific genes and a core set of genes associated with nematode parasitism. A comparative gene expression analysis of samples from fungal spores and mycelia, and infected C. elegans, gave a molecular view of the different stages of the D. coniospora lifecycle. Transformation of D. coniospora allowed targeted gene knock-out and the production of fungus that expresses fluorescent reporter genes. It also permitted the initial characterisation of a potential fungal counter-defensive strategy, involving interference with a host antimicrobial mechanism. This high-quality annotated genome for D. coniospora gives insights into the evolution and virulence of nematode-destroying fungi. Coupled with genetic transformation, it opens the way for molecular dissection of D. coniospora physiology, and will allow both sides of the interaction between D. coniospora and C. elegans, as

  16. Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes.

    Science.gov (United States)

    Lebrigand, Kevin; He, Le D; Thakur, Nishant; Arguel, Marie-Jeanne; Polanowska, Jolanta; Henrissat, Bernard; Record, Eric; Magdelenat, Ghislaine; Barbe, Valérie; Raffaele, Sylvain; Barbry, Pascal; Ewbank, Jonathan J

    2016-05-01

    Drechmeria coniospora is an obligate fungal pathogen that infects nematodes via the adhesion of specialized spores to the host cuticle. D. coniospora is frequently found associated with Caenorhabditis elegans in environmental samples. It is used in the study of the nematode's response to fungal infection. Full understanding of this bi-partite interaction requires knowledge of the pathogen's genome, analysis of its gene expression program and a capacity for genetic engineering. The acquisition of all three is reported here. A phylogenetic analysis placed D. coniospora close to the truffle parasite Tolypocladium ophioglossoides, and Hirsutella minnesotensis, another nematophagous fungus. Ascomycete nematopathogenicity is polyphyletic; D. coniospora represents a branch that has not been molecularly characterized. A detailed in silico functional analysis, comparing D. coniospora to 11 fungal species, revealed genes and gene families potentially involved in virulence and showed it to be a highly specialized pathogen. A targeted comparison with nematophagous fungi highlighted D. coniospora-specific genes and a core set of genes associated with nematode parasitism. A comparative gene expression analysis of samples from fungal spores and mycelia, and infected C. elegans, gave a molecular view of the different stages of the D. coniospora lifecycle. Transformation of D. coniospora allowed targeted gene knock-out and the production of fungus that expresses fluorescent reporter genes. It also permitted the initial characterisation of a potential fungal counter-defensive strategy, involving interference with a host antimicrobial mechanism. This high-quality annotated genome for D. coniospora gives insights into the evolution and virulence of nematode-destroying fungi. Coupled with genetic transformation, it opens the way for molecular dissection of D. coniospora physiology, and will allow both sides of the interaction between D. coniospora and C. elegans, as well as the

  17. Molecular cloning and bioinformatics analysis of the S-adenosyl homocysteine hydrolase(SAHH)gene in the Antarctic ice alga Chlamydomonas sp.ICE-L(Chlamydomonadales, Chlamydomonas)%南极冰藻Chlamydomonas sp.ICE-L S-腺苷同型半胱氨酸水解酶基因的克隆及其生物信息学分析

    Institute of Scientific and Technical Information of China (English)

    王金慧; 丁燏; 简纪常; 吴灶和

    2011-01-01

    S-Adenosyl-L-methionine(SAM)is the most common methyl donor in a multitude of cellular methyla-tion reactions. Numerous methyltransferases transfer the methyl group from SAM to their respective biological acceptors, forming S-adenosyl-L-homocysteine(SAH). SAH is hydrolyzed to adenosine and L-homocysteine by S-adenosyl-L-homocysteine hydrolase(SAHH, EC 3.3.1.1). SAHH is an essential enzyme in all living cells, and has been explored as a potential drug target for many bacteria and parasites. The inhibition of SAHH activity can result in the accumulation of SAH and reduce the S-adenosylmethionine(SAM):SAH ratio in cells. In that case, SAHH can act as a potent feedback inhibitor, blocking the SAM-dependent methylation that is required for the metabolism of a wide variety of biological compounds such as nucleic acids, proteins, phospholipids, and other small molecules. SAHH is found in animals, plants, fungi, and other microorganisms. Antarctic ice microalgae with special characteristics to withstand the extreme environment characterized by low temperatures and ice, high levels of dissolved oxygen, and strong seasonal changes in light intensity have been investigated in recent years. To further understand the intrinsic mechanisms by which the Antarctic sea ice alga Chlamydomonas sp. ICE-L responds to ecological and environmental factors, we cloned and analyzed its SAHH. A cDNA encoding S-adenosyl homocysteine hydrolase(designated as ICE-LSAHH)was cloned from this alga by RT-PCR and RACE-PCR methods. The ICE-LSAHH full-length cDNA sequence was 1844 bp, including a 5'-terminal untranslated region(UTR)of 36 bp, a 3'-terminal UTR of 344 bp with a poly(A)tail, and an open reading frame(ORF)of 1461 bp encoding a polypeptide of 487 amino acids. The predicted molecular weight(MW)of ICE-LSAHH was 53 kD with an estimated pi of 5.16. Using SignalP 3.0 and TMHMM Server v. 2.0 software, it was predicted that the ICE-LSAHH protein did not contain a signal peptide or a transmembranous

  18. Ocean processes at the Antarctic continental slope.

    Science.gov (United States)

    Heywood, Karen J; Schmidtko, Sunke; Heuzé, Céline; Kaiser, Jan; Jickells, Timothy D; Queste, Bastien Y; Stevens, David P; Wadley, Martin; Thompson, Andrew F; Fielding, Sophie; Guihen, Damien; Creed, Elizabeth; Ridley, Jeff K; Smith, Walker

    2014-07-13

    The Antarctic continental shelves and slopes occupy relatively small areas, but, nevertheless, are important for global climate, biogeochemical cycling and ecosystem functioning. Processes of water mass transformation through sea ice formation/melting and ocean-atmosphere interaction are key to the formation of deep and bottom waters as well as determining the heat flux beneath ice shelves. Climate models, however, struggle to capture these physical processes and are unable to reproduce water mass properties of the region. Dynamics at the continental slope are key for correctly modelling climate, yet their small spatial scale presents challenges both for ocean modelling and for observational studies. Cross-slope exchange processes are also vital for the flux of nutrients such as iron from the continental shelf into the mixed layer of the Southern Ocean. An iron-cycling model embedded in an eddy-permitting ocean model reveals the importance of sedimentary iron in fertilizing parts of the Southern Ocean. Ocean gliders play a key role in improving our ability to observe and understand these small-scale processes at the continental shelf break. The Gliders: Excellent New Tools for Observing the Ocean (GENTOO) project deployed three Seagliders for up to two months in early 2012 to sample the water to the east of the Antarctic Peninsula in unprecedented temporal and spatial detail. The glider data resolve small-scale exchange processes across the shelf-break front (the Antarctic Slope Front) and the front's biogeochemical signature. GENTOO demonstrated the capability of ocean gliders to play a key role in a future multi-disciplinary Southern Ocean observing system.

  19. Nematode parasite genes: what's in a name?

    Science.gov (United States)

    Beech, Robin N; Wolstenholme, Adrian J; Neveu, Cédric; Dent, Joseph A

    2010-07-01

    The central theme of Shakespeare's Romeo and Juliet is that names are meaningless, artificial constructs, detached from any underlying reality. By contrast, we argue that a well chosen gene name can concisely convey a wealth of relevant biological information. A consistent nomenclature adds transparency that can have a real impact on our understanding of gene function. Currently, genes in parasitic nematodes are often named ad hoc, leading to confusion that can be resolved by adherence to a nomenclature standard adapted from Caenorhabditis elegans. We demonstrate this with ligand-gated ion-channels and propose that the flood of genome data and differences between parasites and the free living C. elegans will require modification of the standard.

  20. Terrestrial and exposure histories of Antarctic meteorites

    Science.gov (United States)

    Nishiizumi, K.

    1986-01-01

    Records of cosmogenic effects were studied in a large suite of Antarctic meteorites. The cosmogenic nuclide measurements together with cosmic ray track measurements on Antartic meteorites provide information such as exposure age, terrestrial age, size and depth in meteoroid or parent body, influx rate in the past, and pairing. The terrestrail age is the time period between the fall of the meteorite on the Earth and the present. To define terrestrial age, two or more nuclides with different half-lives and possibly noble gases are required. The cosmogenic radionuclides used are C-14, Kr-81, Cl-36, Al-26, Be-10, Mn-53, and K-40.

  1. Ultraviolet radiation levels during the Antarctic spring

    Science.gov (United States)

    Frederick, John E.; Snell, Hilary E.

    1988-01-01

    The decrease in atmospheric ozone over Antarctica during spring implies enhanced levels of ultraviolet (UV) radiation received at the earth's surface. Model calculations show that UV irradiances encountered during the occurrence of an Antarctic 'ozone hole' remain less than those typical of a summer solstice at low to middle latitudes. However, the low ozone amounts observed in October 1987 imply biologically effective irradiances for McMurdo Station, Antarctica, that are comparable to or greater than those for the same location at December solstice. Life indigenous to Antarctica thereby experiences a greatly extended period of summerlike UV radiation levels.

  2. Automatic focusing system of BSST in Antarctic

    Science.gov (United States)

    Tang, Peng-Yi; Liu, Jia-Jing; Zhang, Guang-yu; Wang, Jian

    2015-10-01

    Automatic focusing (AF) technology plays an important role in modern astronomical telescopes. Based on the focusing requirement of BSST (Bright Star Survey Telescope) in Antarctic, an AF system is set up. In this design, functions in OpenCV is used to find stars, the algorithm of area, HFD or FWHM are used to degree the focus metric by choosing. Curve fitting method is used to find focus position as the method of camera moving. All these design are suitable for unattended small telescope.

  3. The Antarctic Ozone Hole: An Update

    Science.gov (United States)

    Douglass, Anne R.; Newman, Paul A.; Solomon, Susan

    2014-01-01

    The stratospheric ozone hole, an annual occurrence during austral spring, is caused by heterogeneous conversion of hydrogen chloride and chlorine nitrate to chlorine radicals. These reactions take place of polar stratospheric cloud particles in the cold, isolate Antarctic winter vortex. The chlorine radicals participate in chemical reactions that rapidly deplete ozone when sunlight returns at the end of polar night. International agreements eliminated production of the culprit anthropogenic chlorofluorocarbons in the late 1990s, but due to their long stratospheric lifetime (50-100 years), the ozone hole will continue its annual appearance for years to come.

  4. Nematode Faunal Response to Grassland Degradation in Horqin Sandy Land

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The responses of soil nematode communities to grassland degradation were studied under undegraded grassland (UG),degraded grassland (DG), and improved grassland (IG), in Horqin Sandy Land, Inner Mongolia, Northeast China. Soil samples were collected at depths of 0-10, 10-20, and 20-30 cm. Total organic carbon (TOC) and total nitrogen (TN)exhibited positive effects on the total number of nematodes and trophic groups. Significant treatment effects were found in the total number of nematodes, plant parasites, and omnivores-predators. Measures taken in the improved grassland could improve the number of omnivore-predators, especially in the deeper soil layers. Nematode richness was lower in the DG treatment than in the IG and UG treatments. The food web structure index (SI) was significantly higher in the UG and IG treatments than in the DG treatment. A higher SI suggested a food web with more trophic linkages and relatively healthy ecosystems.

  5. Soil microorganisms control plant ectoparasitic nematodes in natural coastal foredunes

    NARCIS (Netherlands)

    Piskiewicz, A.M.; Duyts, H.; Berg, M.P.; Costa, S.R.; Putten, van der W.H.

    2007-01-01

    Belowground herbivores can exert important controls on the composition of natural plant communities. Until now, relatively few studies have investigated which factors may control the abundance of belowground herbivores. In Dutch coastal foredunes, the root-feeding nematode Tylenchorhynchus ventralis

  6. Survey of fresh vegetables for nematodes, amoebae, and Salmonella.

    Science.gov (United States)

    Rude, R A; Jackson, G J; Bier, J W; Sawyer, T K; Risty, N G

    1984-01-01

    Contamination by nematodes, amoebae, and bacteria of the genus Salmonella was estimated in a 2-year survey of salad vegetables obtained from wholesale and retail sources. The vegetables examined were cucumbers, cabbage, lettuce, celery, carrots, radishes, tomatoes, mushrooms, cauliflower, and spinach. Nematode eggs and larvae were recovered by the Nacconol-ether centrifugation method. Some nematode eggs were identified as parasitic Ascaris sp.; the majority of larval nematodes were thought to be soil-dwelling species. Amoebae were recovered by rinsing the vegetables with distilled water, centrifuging the rinse water, and transferring the sediment to agar plates on which a bacterial lawn had previously been grown; trophozoites identified as the potentially pathogenic species--Acanthamoeba polyphaga, A. rhysodes, and A. castellanii--were the most common amoebae recovered on the plates. Salmonella spp. were grown from 4 of 50 samples.

  7. [Effects of phytase transgenic corn planting on soil nematode community].

    Science.gov (United States)

    Zhao, Zong-Chao; Su, Ying; Mou, Wen-Ya; Liu, Man-Qiang; Chen, Xiao-Yun; Chen, Fa-Jun

    2014-04-01

    A healthy soil ecosystem is essential for nutrient cycling and energy conversion, and the impact of exogenous genes from genetically modified crops had aroused wide concerns. Phytase transgenic corn (i. e., the inbred line BVLA430101) was issued a bio-safety certificate on 27 September 2009 in China, which could improve the efficiency of feed utilization, reduce environmental pollution caused by animal manure. In this study, the abundance of trophic groups, community structure and ecological indices of soil nematodes were studied over the growing cycle of phytase transgenic corn (ab. transgenic corn) and control conventional parental corn (ab. control corn) in the field. Totally 29 and 26 nematode genera were isolated from transgenic corn and control corn fields, respectively. The abundances of bacterivores and omnivores-predators, the total number of soil nematodes, and the Shannon index (H) were significantly greater under transgenic corn than under control corn, while the opposite trend was found for the relative abundance of herbivores and the maturity index (Sigma MI) of soil nematodes. Repeated-measures analysis of variance (ANOVA) did not detect any significant effects of transgenic corn on the composition and abundance of nematode trophic groups and ecological indices of soil nematodes. Furthermore, the Student-T test showed that the abundances of bacterivores and omnivores-predators and the total number of soil nematodes during the milk-ripe stage were significant higher in the transgenic corn field than in the control corn field. The effects of transgenic corn planting on soil nematodes might be related to the increase in the nitrogen content of field soil under transgenic corn compared to control corn.

  8. Sex-specific mating pheromones in the nematode Panagrellus redivivus

    OpenAIRE

    Choe, Andrea; Chuman, Tatsuji; von Reuss, Stephan H.; Dossey, Aaron T.; Yim, Joshua J.; Ajredini, Ramadan; Kolawa, Adam A.; Kaplan, Fatma; Alborn, Hans T.; Teal, Peter E. A.; Schroeder, Frank C.; Paul W. Sternberg; EDISON, ARTHUR S.

    2012-01-01

    Nematodes use an extensive chemical language based on glycosides of the dideoxysugar ascarylose for developmental regulation (dauer formation), male sex attraction, aggregation, and dispersal. However, no examples of a female- or hermaphrodite-specific sex attractant have been identified to date. In this study, we investigated the pheromone system of the gonochoristic sour paste nematode Panagrellus redivivus, which produces sex-specific attractants of the opposite sex. Activity-guided fracti...

  9. Entomopathogenic Nematodes for the Biological Control of Pest Insects

    OpenAIRE

    Ljerka Oštrec

    2001-01-01

    Entomopathogenic nematodes are part of 9 families, but only some species of these families: Heterorhabditidae, Mermithidae and Steinernematidae kill insects. Infective juveniles enter the insect host through the cuticle, or through the mouth, anus, etc., to reach the haemocel. The infective juveniles also enter the insect by the foot. After that the nematodes leave the insect who usually dies. The infective juveniles are associated with symbiotic bacterium (Xenorhabdus, Photorhabdus) which h...

  10. Solution structure of CEH-37 homeodomain of the nematode Caenorhabditis elegans

    Energy Technology Data Exchange (ETDEWEB)

    Moon, Sunjin [Structural Biochemistry and Molecular Biophysics Lab, Department of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul 120-749 (Korea, Republic of); Lee, Yong Woo; Kim, Woo Taek [Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul 120-749 (Korea, Republic of); Lee, Weontae, E-mail: wlee@spin.yonsei.ac.kr [Structural Biochemistry and Molecular Biophysics Lab, Department of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul 120-749 (Korea, Republic of)

    2014-01-10

    Highlights: •We have determined solution structures of CEH-37 homedomain. •CEH-37 HD has a compact α-helical structure with HTH DNA binding motif. •Solution structure of CEH-37 HD shares its molecular topology with that of the homeodomain proteins. •Residues in the N-terminal region and HTH motif are important in binding to Caenorhabditis elegans telomeric DNA. •CEH-37 could play an important role in telomere function via DNA binding. -- Abstract: The nematode Caenorhabditis elegans protein CEH-37 belongs to the paired OTD/OTX family of homeobox-containing homeodomain proteins. CEH-37 shares sequence similarity with homeodomain proteins, although it specifically binds to double-stranded C. elegans telomeric DNA, which is unusual to homeodomain proteins. Here, we report the solution structure of CEH-37 homeodomain and molecular interaction with double-stranded C. elegans telomeric DNA using nuclear magnetic resonance (NMR) spectroscopy. NMR structure shows that CEH-37 homeodomain is composed of a flexible N-terminal region and three α-helices with a helix-turn-helix (HTH) DNA binding motif. Data from size-exclusion chromatography and fluorescence spectroscopy reveal that CEH-37 homeodomain interacts strongly with double-stranded C. elegans telomeric DNA. NMR titration experiments identified residues responsible for specific binding to nematode double-stranded telomeric DNA. These results suggest that C. elegans homeodomain protein, CEH-37 could play an important role in telomere function via DNA binding.

  11. Communities of terrestrial nematodes after different approaches to heathland restoration

    Science.gov (United States)

    Radochova, Petra; Frouz, Jan

    2016-04-01

    Since the 20th century, the distribution of European heathlands rapidly decreased due to agricultural intensification, heavy use of artificial fertilizers or acidification (Aerts & Heil, 1993). Therefore, various attempts of heathland restoration are under way in these days. Analysis of nematode community composition can be one of the tools suitable for succession evaluation (Ferris et al., 2001). In 2011, 2013 and 2014, soil samples were collected from heathland restoration experiment (launched in 2011) where different restoration methods were applied in a 3 × 3 factorial experiment; existing heathlands were also sampled to identify the target community both in dry and wet heathland. A total of 60 samples of extracted nematodes were analysed for absolute abundance, trophic groups, and genera dominance. Various indices were calculated to describe the nematode community. We were able to prove faster development of wet heathlands towards the target community. However, because of large data variability, there was no significant difference between treatments. Development of wet and dry heathlands differed also in increased proportion of omniphagous nematodes in 2013 and predators in 2014 in dry heathlands. After three years of heathland restoration, nematode community has not yet reached parameters of the target community. References Aerts, R., Heil, G. W., 1993. Heathlands: patterns and processes in a changing environment, 1st ed, Geobotany: 20. Springer Netherlands, Dordrecht, p. 229. Ferris, H., Bongers, T., De Goede, R. G. M., 2001. A framework for soil food web diagnostics: Extension of the nematode faunal analysis oncept. Appl. Soil Ecol. 18, 13-29.

  12. Intraocular nematode with diffuse unilateral subacute neuroretinitis: case report

    Directory of Open Access Journals (Sweden)

    Zakariah Sakinah

    2011-06-01

    Full Text Available Abstract Background Live intraocular nematode is a rare occurrence. Nematode can migrate actively within the eye, creating visual symptoms and damaging ocular tissue. Case presentation A 26-year old man presented with painless reduced vision of the left eye for one week duration. It was associated with floaters. Visual acuity on the left eye was hand movement. Anterior segment examination was normal with normal intra-ocular pressure. Fundus examination showed a live nematode lying subretinally at the macular area with macular oedema and multifocal chorioretinal lesions at peripheral retina. There was no vitritis, vasculitis or any retinal hemorrhage. Systemic examination revealed normal findings and laboratory studies only showed leucocytosis with normal eosinophil count and negative serum toxocara antibody. The diagnosis of introcular nematode with diffuse unilateral subacute neuroretinitis was made. He was treated with oral anti-helminths and a course of oral steroid at a reducing dose. The nematode had died evidenced by its immobility during the treatment and finally disintegrated, leaving macular oedema with mottling appearance and mild hyperpigmentation. Multifocal chorioretinal lesions had also resolved. However despite treatment his visual acuity during follow-up had remained poor. Conclusions Cases of intraocular nematode, though not commonly encountered, continue to present the ophthalmologist with the problem of diagnosis and management and hence poorer prognosis to the patient.

  13. Temperature-based bioclimatic parameters can predict nematode metabolic footprints.

    Science.gov (United States)

    Bhusal, Daya Ram; Tsiafouli, Maria A; Sgardelis, Stefanos P

    2015-09-01

    Nematode metabolic footprints (MFs) refer to the lifetime amount of metabolized carbon per individual, indicating a connection to soil food web functions and eventually to processes supporting ecosystem services. Estimating and managing these at a convenient scale requires information upscaling from the soil sample to the landscape level. We explore the feasibility of predicting nematode MFs from temperature-based bioclimatic parameters across a landscape. We assume that temperature effects are reflected in MFs, since temperature variations determine life processes ranging from enzyme activities to community structure. We use microclimate data recorded for 1 year from sites differing by orientation, altitude and vegetation cover. At the same sites we estimate MFs for each nematode trophic group. Our models show that bioclimatic parameters, specifically those accounting for temporal variations in temperature and extremities, predict most of the variation in nematode MFs. Higher fungivorous and lower bacterivorous nematode MFs are predicted for sites with high seasonality and low isothermality (sites of low vegetation, mostly at low altitudes), indicating differences in the relative contribution of the corresponding food web channels to the metabolism of carbon across the landscape. Higher plant-parasitic MFs were predicted for sites with high seasonality. The fitted models provide realistic predictions of unknown cases within the range of the predictor's values, allowing for the interpolation of MFs within the sampled region. We conclude that upscaling of the bioindication potential of nematode communities is feasible and can provide new perspectives not only in the field of soil ecology but other research areas as well.

  14. A Device to Measure the Propulsive Power of Nematodes

    CERN Document Server

    Yuan, J; Gnatt, M; Raizen, D M; Bau, H H

    2011-01-01

    In the fluid dynamics video, we present a microfluidic device to measure the propulsive power of nematodes. The device consists of a tapered conduit filled with aqueous solution. The conduit is subjected to a DC electric field with the negative pole at the narrow end and to pressure-driven flow directed from the narrow end. The nematode is inserted at the conduit's wide end. Directed by the electric field (through electrotaxis), the nematode swims deliberately upstream toward the negative pole of the DC field. As the conduit narrows, the average fluid velocity and the drag force on the nematode increase. Eventually, the nematode arrives at an equilibrium position, at which its propulsive force balances the viscous drag force induced by the adverse flow. The equilibrium position of different animals, with similar body lengths, was measured as a function of the flow rate. The flow field around the nematode was obtained by direct numerical simulations with the experimentally imaged gait and the tapered geometry ...

  15. Alternatives to anthelmintics for the control of nematodes in livestock.

    Science.gov (United States)

    Stear, M J; Doligalska, M; Donskow-Schmelter, K

    2007-02-01

    Efficient and welfare-friendly livestock production demands the control of nematode infection. Current control measures rely upon anthelmintic treatment but are threatened by the widespread evolution of drug-resistance in parasite populations. Several methods have been advocated to control nematodes without relying on effective anthelmintics. These include grazing management, biological control, nutritional supplementation, vaccination, and genetic approaches. Each method has its advantages and disadvantages. There are several grazing management schemes that can reduce the severity of infection but they are insufficient on their own to control infection. Biological control includes the use of predatory fungi to control nematode populations and the use of pasture species that can reduce the intensity of infection. Fungi can control nematodes but the current requirement for daily feeding means that this approach will be most useful for animals that are handled daily. Feeding supplementary protein can control nematode infection. The method is simple but can be expensive and may not be cost-effective for some marginal enterprises. Genetic approaches include the use of resistant breeds and selective breeding. Some breeds will thrive in conditions that kill animals from other breeds but substitution of resistant breeds is not always feasible. Selective breeding is effective and inexpensive but requires a high level of expertise. The most appropriate method or set of methods to minimize the adverse consequences of nematode infection may vary among farms.

  16. Purification and identification of an antibacterial protein from the symbiotic bacteria associated with novel entomopathogenic nematode, Rhabditis (Oscheius) sp.

    Science.gov (United States)

    Anju, K M; Archana, M M; Mohandas, C; Nambisan, Bala

    2015-04-01

    Entomopathogenic nematodes (EPN) belonging to the families steinernematidae and heterorhabditidae and their symbiotic bacteria Xenorhabdus and Photorhabdus are well-known as biological control agents and are found to produce a wide range of bioactive secondary metabolites. Studies carried out at the Central Tuber Crops Research Institute (CTCRI) on entomopathogenic nematodes resulted in the identification of novel EPN belonging to the family Rhabditidae. This study reports the purification of a high molecular weight antibacterial protein from culture filtrates of a bacterium (Bacillus cereus) symbiotically associated with a novel entomopathogenic nematode Rhabditis (Oscheius) species, maintained at CTCRI laboratory. Fermentation conditions were standardized and optimum antibacterial activity was observed in tryptic soy broth after 48 h incubation at 30 °C. The aqueous extracts yielded antibacterial proteins which were purified by ammonium sulfate precipitation followed by ion exchange chromatography and size exclusion chromatography. Native gel electrophoresis indicated an active protein of molecular mass 220KDa which resolved into a major band of 90 kDa and a minor band of about 40 kDa on SDS-PAGE. The 90 kDa protein showed antibacterial activity and was further analysed by MALDI TOF-MS/MS. The protein was identified as a TQXA (Threonine-glutamine dipeptide) domain containing protein from Bacillus cereus. The protein was found to be active against Bacillus subtilis MTCC2756, Staphylococus aureus MTCC902 and Escherichia coli MTCC 2622 and was thermally stable.

  17. When will the Antarctic Ozone Hole Recover?

    Science.gov (United States)

    Newman, Paul A.; Nash, Eric R.; Kawa, S. Randolph; Montzka, Steve

    2006-01-01

    The Antarctic ozone hole develops each year and culminates by early Spring. Antarctic ozone values have been monitored since 1979 using satellite observations from the .TOMS instrument. The severity of the hole has been assessed from TOMS using the minimum total ozone value from the October monthly mean (depth of the hole) and by calculating the average size during the September-October period. Ozone is mainly destroyed by halogen catalytic cycles, and these losses are modulated by temperature variations in the collar of the polar lower stratospheric vortex. In this presentation, we show the relationships of halogens and temperature to, both the size and depth of the hole. Because atmospheric halogen levels are responding to international agreements that limit or phase out production, the amount of halogens in the stratosphere should decrease over the next few decades. Using projections of halogen levels combined with age-of-air estimates, we find that the ozone hole is recovering at an extremely slow rate and that large ozone holes will regularly recur over the next 2 decades. The ozone hole will begin to show first signs of recovery in about 2023, and the hole will fully recover to pre-1980 levels in approximately 2070. This 2070 recovery is 20 years later than recent projections.

  18. Recovery of the Antarctic Ozone Hole

    Science.gov (United States)

    Newman, Paul A.; Nash, Eric R.; Kawa, S. Randolph; Montzka, Steve; Schauffler, Sue; Stolarski, Richard S.; Douglass, Anne R.; Pawson, Steven; Nielsen, J. Eric

    2006-01-01

    The Antarctic ozone hole develops each year and culminates by early Spring. Antarctic ozone values have been monitored since 1979 using satellite observations from the TOMS and OMI instruments. The severity of the hole has been assessed using the minimum total ozone value from the October monthly mean (depth of the hole), the average size during the September-October period, and the ozone mass deficit. Ozone is mainly destroyed by halogen catalytic cycles, and these losses are modulated by temperature variations in the collar of the polar lower stratospheric vortex. In this presentation, we show the relationships of halogens and temperature to both the size and depth of the hole. Because atmospheric halogen levels are responding to international agreements that limit or phase out production, the amount of halogens in the stratosphere should decrease over the next few decades. We use two methods to estimate ozone hole recovery. First, we use projections of halogen levels combined with age-of-air estimates in a parametric model. Second, we use a coupled chemistry climate model to assess recovery. We find that the ozone hole is recovering at an extremely slow rate and that large ozone holes will regularly recur over the next 2 decades. Furthermore, full recovery to 1980 levels will not occur until approximately 2068. We will also show some error estimates of these dates and the impact of climate change on the recovery.

  19. Longitudinal surface structures (flowstripes on Antarctic glaciers

    Directory of Open Access Journals (Sweden)

    N. F. Glasser

    2011-11-01

    Full Text Available Longitudinal surface structures (''flowstripes'' are common on many glaciers but their origin and significance are poorly understood. In this paper we present observations of the development of these longitudinal structures from four different Antarctic glacier systems (the Lambert Glacier/Amery Ice Shelf area, outlet glaciers in the Ross Sea sector, ice-shelf tributary glaciers on the Antarctic Peninsula, and the onset zone of a tributary to the Recovery Glacier Ice Stream in the Filchner Ice Shelf area. Mapping from optical satellite images demonstrates that longitudinal surface structures develop in two main situations: (1 as relatively wide flow stripes within glacier flow units and (2 as relatively narrow flow stripes where there is convergent flow around nunataks or at glacier confluence zones. Our observations indicate that the confluence features are narrower, sharper, and more clearly defined features. They are characterised by linear troughs or depressions on the ice surface and are much more common than the former type. Longitudinal surface structures within glacier flow units have previously been explained as the surface expression of localised bed perturbations but a universal explanation for those forming at glacier confluences is lacking. Here we propose that these features are formed at zones of ice acceleration and extensional flow at glacier confluences. We provide a schematic model for the development of longitudinal surface structures based on extensional flow that can explain their ridge and trough morphology as well as their down-ice persistence.

  20. Hydrocarbon degradation by Antarctic coastal bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Cavanagh, J.E. [University of Tasmania, Hobart (Australia). Antarctic Cooperative Research Centre; CSIRO Div of Marine Research, Hobart (Australia); University of Tasmania, Hobart (Australia). Dept. of Agricultural Science; Nichols, P.D. [University of Tasmania, Hobart (Australia). Antarctic Cooperative Research Centre; CSIRO Div. of Marine Research, Hobart (Australia); Franzmann, P.D. [CSIRO Land and Water, Wembley (Australia); McMeekin, T.A. [University of Tasmania, Hobart (Australia). Antarctic Cooperative Research Centre

    1999-07-01

    Bacterial cultures obtained through selective enrichment of beach sand collected 60 days and one year after treatment of sites in a pilot oil spill trial conducted at Airport Beach, Vestfold Hills, East Antarctica, were examined for the ability to degrade n-alkanes and phenanthrene. The effects of different hydrocarbon mixtures (Special Antarctic Blend [SAB] and BP-Visco), (fish oil [orange roughy]) and inoculation of replicate sites with water from Organic Lake, (previously shown to contain hydrocarbon-degrading bacteria) on the indigenous microbial population, were examined. Of the cultures obtained, those from sites treated with SAB and BP-Visco degraded n-alkanes most consistently and typically to the greatest extent. Two mixed cultures obtained from samples collected at 60 days and two isolates obtained from these cultures extensively degraded phenanthrene. 1-Hydroxy-naphthoic acid formed the major phenanthrene metabolite. Lower levels of salicyclic acid, 1-naphthol, 1,4-naphthaquinone and phenanthrene 9-10 dihydrodiol were detected in extracts of phenanthrene grown cultures. This study shows that under laboratory conditions indigenous Antarctica bacteria can degrade n-alkanes and the more recalcitrant polycyclic aromatic hydrocarbon, phenanthrene. The enrichment of hydrocarbon degrading microorganisms in Antarctic ecosystems exposed to hydrocarbons, is relevant for the long term fate of hydrocarbon spills in this environment. (author)

  1. Interhemispheric coupling and warm Antarctic interglacials

    Directory of Open Access Journals (Sweden)

    P. B. Holden

    2009-12-01

    Full Text Available Ice core evidence indicates that even though atmospheric CO2 concentrations did not exceed ~300 ppm at any point during the last 800 000 years, East Antarctica was at least ~3–4 °C warmer than pre-industrial (CO2 ~280 ppm in each of the last four interglacials. During the previous three interglacials, this anomalous warming was short lived (~3 000 years and apparently occurred before the completion of Northern Hemisphere deglaciation. Hereafter, we refer to these periods as "Warmer than Present Transients" (WPTs. We here present transient 800 kyr simulations using the intermediate complexity model GENIE-1 which suggest that WPTs could be explained as a consequence of the meltwater-forced slowdown of the Atlantic Meridional Overturning Circulation (AMOC during glacial terminations. It is well known that a slowed AMOC would increase southern Sea Surface Temperature (SST through the bipolar seesaw. Observational data supports this hypothesis, suggesting that the AMOC remained weak throughout the terminations preceding WPTs, strengthening rapidly at a time which coincides closely with peak Antarctic temperature. In order to investigate model and boundary condition uncertainty, we additionally present three ensembles of transient GENIE-1 simulations across Termination II (135 000 to 124 000 BP and three snapshot HadCM3 simulations at 130 000 Before Present (BP. These simulations together reproduce both the timing and magnitude of WPTs, and point to the potential importance of an albedo feedback associated with West Antarctic Ice Sheet (WAIS retreat.

  2. Chlorine Monoxide in the Antarctic Spring Stratosphere.

    Science.gov (United States)

    Jaramillo-Ayerbe, Mauricio

    1988-06-01

    A series of observations of stratospheric chlorine monoxide (ClO) were carried out during the austral springs of 1986 and 1987 in McMurdo Station, Antarctica, as part of two experimental campaigns sent to investigate the seasonal decrease in ozone over the antarctic continent (the ozone "hole"). Measurements of the vertical distribution of ClO were obtained by high resolution ground-based emission spectroscopy at 278 GHz, using the Stony Brook mm-wave receiver. They show the presence of an anomalous layer of lower stratospheric ClO which is not observed at other latitudes. This anomalous layer is centered at ~20 km altitude and exhibits a pronounced diurnal variation, reaching a maximum at midday and disappearing at night. During the period of Sep. 20-24, 1987, the lower-stratospheric ClO had a maximum volume mixing ratio of 1.8_sp{+0cdot5}{ -0cdot9} ppbv. A normal ClO layer centered at ~36 km was also observed, with concentrations and diurnal behavior similar to those seen in tropical latitudes. These findings are evidence of anomalous chlorine chemistry taking place in the lower stratosphere during the antarctic spring, and indicate that increasing anthropogenic chlorine is a prime causative agent in the formation of the ozone hole.

  3. Widespread Antarctic glaciation during the Late Eocene

    Science.gov (United States)

    Carter, Andrew; Riley, Teal R.; Hillenbrand, Claus-Dieter; Rittner, Martin

    2017-01-01

    Marine sedimentary rocks drilled on the southeastern margin of the South Orkney microcontinent in Antarctica (Ocean Drilling Program Leg 113 Site 696) were deposited between ∼36.5 Ma to 33.6 Ma, across the Eocene-Oligocene climate transition. The recovered rocks contain abundant grains exhibiting mechanical features diagnostic of iceberg-rafted debris. Sand provenance based on a multi-proxy approach that included petrographic analysis of over 275,000 grains, detrital zircon geochronology and apatite thermochronometry rule out local sources (Antarctic Peninsula or the South Orkney Islands) for the material. Instead the ice-transported grains show a clear provenance from the southern Weddell Sea region, extending from the Ellsworth-Whitmore Mountains of West Antarctica to the coastal region of Dronning Maud Land in East Antarctica. This study provides the first evidence for a continuity of widespread glacier calving along the coastline of the southern Weddell Sea embayment at least 2.5 million yrs before the prominent oxygen isotope event at 34-33.5 Ma that is considered to mark the onset of widespread glaciation of the Antarctic continent.

  4. Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida

    Directory of Open Access Journals (Sweden)

    Thomas W Kelley

    2010-12-01

    Full Text Available Abstract Background Nematodes represent the most abundant benthic metazoa in one of the largest habitats on earth, the deep sea. Characterizing major patterns of biodiversity within this dominant group is a critical step towards understanding evolutionary patterns across this vast ecosystem. The present study has aimed to place deep-sea nematode species into a phylogenetic framework, investigate relationships between shallow water and deep-sea taxa, and elucidate phylogeographic patterns amongst the deep-sea fauna. Results Molecular data (18 S and 28 S rRNA confirms a high diversity amongst deep-sea Enoplids. There is no evidence for endemic deep-sea lineages in Maximum Likelihood or Bayesian phylogenies, and Enoplids do not cluster according to depth or geographic location. Tree topologies suggest frequent interchanges between deep-sea and shallow water habitats, as well as a mixture of early radiations and more recently derived lineages amongst deep-sea taxa. This study also provides convincing evidence of cosmopolitan marine species, recovering a subset of Oncholaimid nematodes with identical gene sequences (18 S, 28 S and cox1 at trans-Atlantic sample sites. Conclusions The complex clade structures recovered within the Enoplida support a high global species richness for marine nematodes, with phylogeographic patterns suggesting the existence of closely related, globally distributed species complexes in the deep sea. True cosmopolitan species may additionally exist within this group, potentially driven by specific life history traits of Enoplids. Although this investigation aimed to intensively sample nematodes from the order Enoplida, specimens were only identified down to genus (at best and our sampling regime focused on an infinitesimal small fraction of the deep-sea floor. Future nematode studies should incorporate an extended sample set covering a wide depth range (shelf, bathyal, and abyssal sites, utilize additional genetic loci (e

  5. Antarctic Crustal Thickness from Gravity Inversion

    Science.gov (United States)

    Vaughan, A. P.; Kusznir, N. J.; Ferraccioli, F.; Jordan, T. A.

    2013-12-01

    Using gravity anomaly inversion, we have produced the first comprehensive regional maps of crustal thickness and oceanic lithosphere distribution for Antarctica and the Southern Ocean. We determine Moho depth, crustal basement thickness, continental lithosphere thinning (1-1/β) and ocean-continent transition location using a 3D spectral domain gravity inversion method, which incorporates a lithosphere thermal gravity anomaly correction. The continental lithosphere thinning distribution, used to define the initial thermal model temperature perturbation is derived from the gravity inversion and uses no a priori isochron information; as a consequence the gravity inversion method provides a prediction of ocean-continent transition location, which is independent of ocean isochron information. The gravity anomaly contribution from ice thickness is included in the gravity inversion, as is the contribution from sediments which assumes a compaction controlled sediment density increase with depth. Data used in the gravity inversion are elevation and bathymetry, free-air gravity anomaly, the most recent Bedmap2 ice thickness and bedrock topography compilation south of 60 degrees south (Fretwell et al., 2013) and relatively sparse constraints on sediment thickness. Our gravity inversion study predicts thick crust (> 45 km) under interior East Antarctica penetrated by narrow continental rifts that feature relatively thinner crust. The East Antarctic Rift System (EARS) is a major Permian to Cretaceous age rift system that appears to extend from the continental margin at the Lambert Rift to the South Pole region, a distance of 2500 km. This is comparable in scale to the well-studied East African rift system. Intermediate crustal thickness with an inferred linear rift fabric is predicted under Coates Land. An extensive region of either thick oceanic crust or highly thinned continental crust is predicted offshore Oates Land and north Victoria Land, and also off West Antarctica

  6. Directional movement of entomopathogenic nematodes in response to electrical fields: Effects of species, magnitude of voltage, and infective juvenile age

    Science.gov (United States)

    Entomopathogenic nematodes respond to a variety of stimuli when foraging. Previously, we reported a directional response to electrical fields for two entomopathogenic nematode species; specifically, when electrical fields were generated on agar plates Steinernema glaseri (a nematode that utilizes a...

  7. Microbial biomass and basal respiration in Sub-Antarctic and Antarctic soils in the areas of some Russian polar stations

    Directory of Open Access Journals (Sweden)

    E. Abakumov

    2014-03-01

    Full Text Available Antarctica is the unique place for pedological investigations. Soils of Antarctica have been studied intensively during the last century. Antarctic logistic provides the possibility to scientists access the terrestrial landscapes mainly in the places of polar stations. That is why the main and most detailed pedological investigations were conducted in Mc Murdo Valleys, Transantarctic Mountains, South Shetland Islands, Larsemann hills and Schirmacher Oasis. Investigations were conducted during the 53rd and 55th Russian Antarctic expeditions on the base of soil pits and samples collected in Sub-Antarctic and Antarctic regions. Soils of diverse Antarctic landscapes were studied with aim to assess the microbial biomass level, basal respiration rates and metabolic activity of microbial communities. The investigation conducted shows that soils of Antarctic are quite different in profile organization and carbon content. In general, Sub-Antarctic soils are characterized by more developed humus (sod organo-mineral horizons as well as the upper organic layer. The most developed organic layers were revealed in peat soils of King-George Island, where its thickness reach even 80 cm. These soils as well as soils under guano are characterized by the highest amount of total organic carbon (TOC 7.22–33.70%. Coastal and continental soils of Antarctic are presented by less developed Leptosols, Gleysols, Regolith and rare Ornhitosol with TOC levels about 0.37–4.67%. The metabolic ratios and basal respiration were higher in Sub-Antarctic soils than in Antarctic ones which can be interpreted as result of higher amounts of fresh organic remnants in organic and organo-mineral horizons. Also the soils of King-George island have higher portion of microbial biomass (max 1.54 mg g−1 than coastal (max 0.26 mg g−1 and continental (max 0.22 mg g−1 Antarctic soils. Sub-Antarctic soils mainly differ from Antarctic ones in increased organic layers thickness and total

  8. Plant nematodes in South Africa. 12. Checklist of plant nematodes of the protected areas of the Eastern Cape Province

    Directory of Open Access Journals (Sweden)

    Mariette Marais

    2014-02-01

    Full Text Available Soil-inhabiting nematodes, including plant-parasitic nematodes, are considered to be the most abundant multicellular organisms in the soil, and of particular interest since they are an integral part of the interlocking chain of nutrient conversions. Because of their abundance and relative susceptibility to both physical and chemical changes, these organisms are used as indicator organisms. The National Collection of Nematodes (NCN consists of a core collection, the Meloidogyne Collection and the Juan Heyns Collection, which are housed at the Plant Protection Research Institute of the Agricultural Research Council in Pretoria. Vast amounts of biodiversity data are contained in NCN, and the digitising of the collection from 2007 to 2014 yielded unpublished locality information, especially datasets of plant nematodes reported from protected areas of the Eastern Cape. Two hundred and thirty plant nematode species belonging to 36 genera were reported from the Eastern Cape. Of these, only 80 were from protected areas, whilst 163 were from uncultivated areas (outside protected areas and 148 from cultivated areas. Ten species were described from protected areas, namely Criconemoides silvicola, Meloinema silvicola, Ogma tuberculatum, Paralongidorus cebensis, Paralongidorus hanliae, Scutellonema tsitsikamense, Trichodorus vandenbergae, Xiphinema erriae, Xiphinema ornatizulu and Xiphinema simplex. Only M. silvicola, O. tuberculatum, P. cebensis and S. tsitsikamense were not reported from other provinces, suggesting endemism.Conservation implications: The diversity of nematode fauna is not adequately protected as most nematode biodiversity in the Eastern Cape lies outside protected areas, with only 80 of the 230 plant-feeding nematode species in the province being reported from protected areas.

  9. Plant-parasitic Nematode Acetylcholinesterase Inhibition by Carbamate and Organophosphate Nematicides.

    Science.gov (United States)

    Opperman, C H; Chang, S

    1990-10-01

    The sensitivity of acetylcholinesterases (ACHE) isolated from the plant-parasitic nematodes Meloidogyne arenaria, M. incognita, and Heterodera glycines and the free-living nematode Caenorhabditis elegans to carbamate and organophosphate nematicides was examined. The AChE from plant-parasitic nematode species were more sensitive to carbamate inhibitors than was AChE from C. elegans, but response to the organophosphates was approximately equivalent. The sulfur-containing phosphate nematicides were poor inhibitors of nematode acetylcholinesterase, but treatment with an oxidizing agent greatly improved inhibition. Behavioral bioassays with living nematodes revealed a poor relationship between enzyme inhibition and expression of symptoms in live nematodes.

  10. The impacts of local human activities on the Antarctic environment

    Science.gov (United States)

    Tin, T.; Fleming, Z. L.; Hughes, K. A.; Ainley, D. G.; Convey, P.; Moreno, C. A.; Pfeiffer, S.; Scott, J.; Snape, I.

    2009-04-01

    An overview of a recently published review of the scientific literature from the past decade on the impacts of human activities on the Antarctic environment is presented. An assessment of the cumulative effects of scientists and accompanying base construction, tourists and fishery activities in Antarctica is timely given a decade since the Protocol on Environmental Protection to the Antarctic Treaty came into force in 1998 and the increasing attention given to and human presence in Antarctica during this 2007-2009 IPY. A range of impacts has been identified at a variety of spatial and temporal scales. Chemical contamination and sewage disposal on the continent have been found to be long-lived, with contemporary sewage management practices at many coastal stations insufficient to prevent local contamination. Human activities, particularly construction and transport, have affected Antarctic flora and fauna and a small number of non-indigenous plant and animal species has become established on some of the Antarctic Peninsula and sub Antarctic islands. There is little indication of recovery of overexploited fish stocks, and ramifications of fishing activity on bycatch species and the ecosystem could also be far-reaching. The Antarctic Treaty System and its instruments, in particular the Convention for the Conservation of Antarctic Marine Living Resources (CCAMLR) and the Environmental Protocol, provide a framework within which management of human activities take place. In order to ensure comprehensive protection of the Antarctic environment, including its intrinsic, wilderness and scientific values in the face of the continuing expansion of human activities in Antarctica, a more effective implementation of a wide range of measures is essential. These include effective environmental impact assessments, long-term monitoring, mitigation measures for non-indigenous species, ecosystem-based management of living resources, and increased regulation of National Antarctic

  11. Tomato transgenic plants expressing hairpin construct of a nematode protease gene conferred enhanced resistance to root-knot nematodes

    Science.gov (United States)

    Dutta, Tushar K.; Papolu, Pradeep K.; Banakar, Prakash; Choudhary, Divya; Sirohi, Anil; Rao, Uma

    2015-01-01

    Root-knot nematodes (Meloidogyne incognita) cause substantial yield losses in vegetables worldwide, and are difficult to manage. Continuous withdrawal of environmentally-harmful nematicides from the global market warrants the need for novel nematode management strategies. Utility of host-delivered RNAi has been demonstrated in several plants (Arabidopsis, tobacco, and soybean) that exhibited resistance against root-knot and cyst nematodes. Herein, a M. incognita-specific protease gene, cathepsin L cysteine proteinase (Mi-cpl-1), was targeted to generate tomato transgenic lines to evaluate the genetically modified nematode resistance. In vitro knockdown of Mi-cpl-1 gene led to the reduced attraction and penetration of M. incognita in tomato, suggesting the involvement of Mi-cpl-1 in nematode parasitism. Transgenic expression of the RNAi construct of Mi-cpl-1 gene resulted in 60–80% reduction in infection and multiplication of M. incognita in tomato. Evidence for in vitro and in vivo silencing of Mi-cpl-1 was confirmed by expression analysis using quantitative PCR. Our study demonstrates that Mi-cpl-1 plays crucial role during plant-nematode interaction and plant-mediated downregulation of this gene elicits detrimental effect on M. incognita development, reinforcing the potential of RNAi technology for management of phytonematodes in crop plants. PMID:25883594

  12. Tomato transgenic plants expressing hairpin construct of a nematode protease gene conferred enhanced resistance to root-knot nematodes

    Directory of Open Access Journals (Sweden)

    Tushar Kanti Dutta

    2015-04-01

    Full Text Available Root-knot nematodes (Meloidogyne incognita cause substantial yield losses in vegetables worldwide, and are difficult to manage. Continuous withdrawal of environmentally-harmful nematicides from the global market warrants the need for novel nematode management strategies. Utility of host-delivered RNAi has been demonstrated in several plants (Arabidopsis, tobacco and soybean that exhibited resistance against root-knot and cyst nematodes. Herein, a M. incognita-specific protease gene, cathepsin L cysteine proteinase (Mi-cpl-1, was targeted to generate tomato transgenic lines to evaluate the genetically modified nematode resistance. In vitro knockdown of Mi-cpl-1 gene led to the reduced attraction and penetration of M. incognita in tomato, suggesting the involvement of Mi-cpl-1 in nematode parasitism. Transgenic expression of the RNAi construct of Mi-cpl-1 gene resulted in 60-80% reduction in infection and multiplication of M. incognita in tomato. Evidence for in vitro and in vivo silencing of Mi-cpl-1 was confirmed by expression analysis using quantitative PCR. Our study demonstrates that Mi-cpl-1 plays crucial role during plant-nematode interaction and plant-mediated downregulation of this gene elicits detrimental effect on M. incognita development, reinforcing the potential of RNAi technology for management of phytonematodes in crop plants.

  13. Bacterial diversity of autotrophic enriched cultures from remote, glacial Antarctic, Alpine and Andean aerosol, snow and soil samples

    Directory of Open Access Journals (Sweden)

    E. González-Toril

    2009-01-01

    Full Text Available Four different communities and one culture of autotrophic microbial assemblages were obtained by incubation of samples collected from high elevation snow in the Alps (Mt. Blanc area and the Andes (Nevado Illimani summit, Bolivia, from Antarctic aerosol (French station Dumont d'Urville and a maritime Antarctic soil (King George Island, South Shetlands, Uruguay Station Artigas, in a minimal mineral (oligotrophic media. Molecular analysis of more than 200 16S rRNA gene sequences showed that all cultured cells belong to the Bacteria domain. Phylogenetic comparison with the currently available rDNA database allowed sequences belonging to Proteobacteria Alpha-, Beta- and Gamma-proteobacteria, Actinobacteria and Bacteroidetes phyla to be identified. The Andes snow culture was the richest in bacterial diversity (eight microorganisms identified and the marine Antarctic soil the poorest (only one. Snow samples from Col du Midi (Alps and the Andes shared the highest number of identified microorganisms (Agrobacterium, Limnobacter, Aquiflexus and two uncultured Alphaproteobacteria clones. These two sampling sites also shared four sequences with the Antarctic aerosol sample (Limnobacter, Pseudonocardia and an uncultured Alphaproteobacteriaclone. The only microorganism identified in the Antarctica soil (Brevundimonas sp. was also detected in the Antarctic aerosol. Most of the identified microorganisms had been detected previously in cold environments, marine sediments soils and rocks. Air current dispersal is the best model to explain the presence of very specific microorganisms, like those identified in this work, in environments very distant and very different from each other.

  14. 78 FR 48201 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978 (Pub. L. 95-541)

    Science.gov (United States)

    2013-08-07

    ... sites at various sub-Antarctic (within geographic coverage area of the Antarctic Treaty) and Antarctic... Antarctic Conservation Act of 1978 (Pub. L. 95-541) AGENCY: National Science Foundation. ACTION: Notice of Permit Applications Received under the Antarctic Conservation Act of 1978, Public Law 95-541....

  15. Antarctic Treaty Summit to Focus on Global Science Policy Lessons

    Science.gov (United States)

    Berkman, Paul Arthur; Walton, David W. H.; Weiler, C. Susan

    2008-10-01

    The Antarctic Treaty Summit, which will coincide with the fiftieth anniversary of the treaty's signing, will be held at the Smithsonian Institution's National Museum of Natural History, in Washington, D. C., from 30 November to 3 December 2009. The summit will provide an open international forum for scientists, legislators, lawyers, administrators, educators, students, corporate executives, historians, and other members of global civil society to explore science policy achievements from the first 50 years of the Antarctic Treaty. In addition, the summit will complement official government celebrations of the Antarctic Treaty anniversary that do not include public participation.

  16. Adjustment of pigment composition in Desmarestia (Desmarestiaceae species along a sub-Antarctic to Antarctic latitudinal gradient

    Directory of Open Access Journals (Sweden)

    Andrés Mansilla

    2016-08-01

    Full Text Available Photosynthesis at high latitudes demands efficient strategies of light utilization to maintain algal fitness and performance. The fitness, and physiological adaptation, of a plant or algae species depends in part on the abundance and efficiency of the pigments it can produce to utilize the light resource from its environment. We quantified pigment composition and concentration in six species of the brown macroalgal genus Desmarestia, collected from sub-Antarctic sites (Strait of Magellan, Beagle Channel–Cape Horn Province and sites on the Antarctic Peninsula and adjacent islands. Sub-Antarctic Desmarestia species exhibited lower concentrations of chlorophyll a, chlorophyll c and fucoxanthin than endemic Antarctic species. Antarctic samples of D. menziesii and D. antarctica collected along a decreasing latitudinal gradient showed spatial and interspecific differences in light-harvesting pigment composition. Our results suggest distinct physiological adjustments in Desmarestia species in response to heterogeneous abiotic environmental conditions. The marine sub-Antarctic and Antarctic ecosystems are characterized by harsh environments (e.g., extreme irradiance, photoperiod, temperature, salinity to which the physiology of macroalgal species must adapt.

  17. 动物寄生线虫遗传多样性的研究进展%Research Progress on Genetic Diversity in Animal Parasitic Nematodes

    Institute of Scientific and Technical Information of China (English)

    殷方媛; 李法财; 赵俊龙; 胡敏

    2015-01-01

    The development of molecular genetic markers for parasitic nematodes has significant implications in fundamental and applied research in Veterinary Parasitology. Knowledge on genetic diversity of nematodes would not only provide a theoretical basis for understanding the spread of drug-resistance alleles, but also have implications in the development of nematode control strategies. This review discusses the applications of molecular genetic markers (RFLP, RAPD, PCR-SSCP, AFLP, SSR and mitochondrial DNA) in research on the genetic diversity of parasitic nematodes.%动物寄生线虫分子遗传标记的发展对兽医寄生虫学中的基础和应用研究领域有着重要意义。通过对线虫种群遗传多样性的研究,不仅能够为抗药性等位基因的扩散提供理论依据,而且对线虫病防治策略的制定具有指导作用。因此,本文就分子遗传标记( RFLP、 RAPD、 PCR-SSCP、 AFLP、 SSR 和线粒体 DNA )在寄生线虫遗传多样性研究中的应用进行综述。

  18. Different adaptations of Chinese winter-over expeditioners during prolonged Antarctic and sub-Antarctic residence.

    Science.gov (United States)

    Chen, Nan; Wu, Quan; Li, Hao; Zhang, Tao; Xu, Chengli

    2016-05-01

    Prolonged residence in Antarctica is characterized by exposure to isolated, confined, and extreme (ICE) environment. Winter-over expeditioners at research stations often exhibit a complex of psychophysiological symptoms, which varied by stations and sociocultural backgrounds. To understand the different patterns of psychophysiological responses provoked by environmental stress, we conducted a longitudinal assessment of mood and endocrine function in two groups of Chinese expeditioners who were deployed to sub-Antarctic (Great Wall Station, 62°S, N = 12) and Antarctic (Zhongshan Station, 66°S, N = 16) from December 2003 to 2005. Measures of mood, thyroid function, the levels of plasma catecholamine, and circulating interleukins were obtained at departure from China, mid-winter (Antarctica), end of winter (Antarctica), and return to China, respectively. The Zhongshan Station crew experienced significant increases in fatigue, anger, tension, confusion, and decrease in free thyroxine (FT4), norepinephrine (NE), and epinephrine (E) during the winter, increase in thyrotropin (TSH) and total triiodothyronine (TT3) when returning, whereas their counterparts at Great Wall Station only experienced increased TT3 after deployment. Moreover, compared with the Great Wall Station crew, the Zhongshan Station crew exhibited greater increase in anger, greater decrease in FT4, total thyroxine (TT4), NE and E over the winter, and greater increase in TSH when returning. Chinese expeditioners who lived and worked at the Antarctic station and the sub-Antarctic station for over a year showed different change patterns in mood and endocrine hormones. Negative mood and endocrine dysfunction were positively associated with the severity of environment. The study is a supplement to scientific knowledge on psychophysiological variation under ICE environment, which has certain applied value for the development of preventive countermeasures or interventions.

  19. Different adaptations of Chinese winter-over expeditioners during prolonged Antarctic and sub-Antarctic residence

    Science.gov (United States)

    Chen, Nan; Wu, Quan; Li, Hao; Zhang, Tao; Xu, Chengli

    2016-05-01

    Prolonged residence in Antarctica is characterized by exposure to isolated, confined, and extreme (ICE) environment. Winter-over expeditioners at research stations often exhibit a complex of psychophysiological symptoms, which varied by stations and sociocultural backgrounds. To understand the different patterns of psychophysiological responses provoked by environmental stress, we conducted a longitudinal assessment of mood and endocrine function in two groups of Chinese expeditioners who were deployed to sub-Antarctic (Great Wall Station, 62°S, N = 12) and Antarctic (Zhongshan Station, 66°S, N = 16) from December 2003 to 2005. Measures of mood, thyroid function, the levels of plasma catecholamine, and circulating interleukins were obtained at departure from China, mid-winter (Antarctica), end of winter (Antarctica), and return to China, respectively. The Zhongshan Station crew experienced significant increases in fatigue, anger, tension, confusion, and decrease in free thyroxine (FT4), norepinephrine (NE), and epinephrine (E) during the winter, increase in thyrotropin (TSH) and total triiodothyronine (TT3) when returning, whereas their counterparts at Great Wall Station only experienced increased TT3 after deployment. Moreover, compared with the Great Wall Station crew, the Zhongshan Station crew exhibited greater increase in anger, greater decrease in FT4, total thyroxine (TT4), NE and E over the winter, and greater increase in TSH when returning. Chinese expeditioners who lived and worked at the Antarctic station and the sub-Antarctic station for over a year showed different change patterns in mood and endocrine hormones. Negative mood and endocrine dysfunction were positively associated with the severity of environment. The study is a supplement to scientific knowledge on psychophysiological variation under ICE environment, which has certain applied value for the development of preventive countermeasures or interventions.

  20. Mutation and evolutionary rates in adelie penguins from the antarctic.

    Directory of Open Access Journals (Sweden)

    Craig D Millar

    Full Text Available Precise estimations of molecular rates are fundamental to our understanding of the processes of evolution. In principle, mutation and evolutionary rates for neutral regions of the same species are expected to be equal. However, a number of recent studies have shown that mutation rates estimated from pedigree material are much faster than evolutionary rates measured over longer time periods. To resolve this apparent contradiction, we have examined the hypervariable region (HVR I of the mitochondrial genome using families of Adélie penguins (Pygoscelis adeliae from the Antarctic. We sequenced 344 bps of the HVR I from penguins comprising 508 families with 915 chicks, together with both their parents. All of the 62 germline heteroplasmies that we detected in mothers were also detected in their offspring, consistent with maternal inheritance. These data give an estimated mutation rate (micro of 0.55 mutations/site/Myrs (HPD 95% confidence interval of 0.29-0.88 mutations/site/Myrs after accounting for the persistence of these heteroplasmies and the sensitivity of current detection methods. In comparison, the rate of evolution (k of the same HVR I region, determined using DNA sequences from 162 known age sub-fossil bones spanning a 37,000-year period, was 0.86 substitutions/site/Myrs (HPD 95% confidence interval of 0.53 and 1.17. Importantly, the latter rate is not statistically different from our estimate of the mutation rate. These results are in contrast to the view that molecular rates are time dependent.

  1. Current Status of Soil-transmitted Nematode Infection in China

    Institute of Scientific and Technical Information of China (English)

    YING-DAN CHEN; LIN-HUA TANG; LONG-QI XU

    2008-01-01

    Objective To Carry out national surveys for ascertaining the current status and trends of soil-transmitted nematode infections in China,providing scientific basis for forther developing control strategies.Methods In 1988-1992(hereinafter abbreriated as "survey in 1990"),a stratified cluster random sampling method was used in the survey.In 2001-2004(hereinafter abbreriated as "survey in 2003"),in order to compare with the survey in 1990,two-characteristic stratified cluster random sampling method was used and 687 investigation spots were sampled from the 2848 spots selected in the survey in 1990.Kato-Katz thick smear method was used to examine the eggs of soil-transmitted nematodes in fecal samples. Results The prevalence rates were 53.6% and 19.6% for soil-transmitted nematodes,14.6%and 6.120% for hookworms,44.6% and 12.7% for Ascaris lumbricoides,17.4% and 4.630% for Trichuris trichiura in survey 1990 and survey 2003,respectively.The prevalence rates of soil-transmitted nematodes were higher in 13 provinces than the average level in China in the survey in 1990.and higher in 8 provinces than the average level in the survey in 2003.The prevalence of hookworms,Ascaris lumbricoides,Trichurls trichiura and the overall prevalence of soft-transmitted nematodes were higher in females than in males.It is estimated from the results of survey in 2003 that the number of persons with soil-transmitted nematode infections in the country is about 129 million,less than that in the survey in 1990. Conclusion The prevalence of soil-transmitted nematodes has declined considerably but is still relatively high in some provinces and autonomous regions.Control activities and socioeconomic development may have contributed to the decreased prevalence.

  2. Photosynthesis in a sub-Antarctic shore-zone lichen

    NARCIS (Netherlands)

    Smith, V.; Gremmen, N.J.M.

    2001-01-01

    Photosynthetic responses to moisture, light, temperature, salinity and inorganic nitrogen fertilization are reported for a shore-zone lichen Turgidiusculum complicatulum (formerly Mastodia tesselata), a possible recent introduction to sub-Antarctic Marion Island. Optimum moisture contents for net ph

  3. A Comparative Study of Antarctic Arctic and Himalayan Ice

    Directory of Open Access Journals (Sweden)

    R. C. Pathak

    1989-07-01

    Full Text Available Arctic, Antarctic and inaccessible lofty regions of Himalayas,which are geographically diverse areas and have been a constant source of inspiration, envisages a challenging field of study 'by early adventurers and scientists of the world. Characteristics of ice obtained at Arctic and Antarctic do not possess similar properties. Even thesalient properties of snow and ice of western and central Himalayas vary due to its differing free water content. A study has been carriedout based on recent Antarctic Expedition by Indian scientists and the data gathered along litha-tectonic regions of Himalayas and their characteristics have been compared, wkich brings out stratigraphic and metamorphic characteristics of the ice and snow. In the present paper,an analysis of the ice and snow properties of Arctic, Antarctic and Himalayan regions has been presented.

  4. German Antarctic Receiving Station (GARS) O'Higgins

    Science.gov (United States)

    Neidhardt, Alexander; Ploetz, Christian; Kluegel, Thomas

    2013-01-01

    In 2012, the German Antarctic Receiving Station (GARS) O'Higgins contributed to the IVS observing program with four observation sessions. Maintenance and upgrades were made, and a new replacement dewar is under construction in the observatory at Yebes, Spain.

  5. Climate Prediction Center (CPC) Daily Antarctic Oscillation Index

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Antarctic Oscillation (AAO) is a leading teleconnection pattern in the Southern Hemisphere circulation. It is calculated as the first Empirical Orthogonal...

  6. Climate Prediction Center(CPC)Monthly Antarctic Oscillation Index

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Antarctic Oscillation (AAO) is a leading teleconnection pattern in the Southern Hemisphere circulation. It is calculated as the first Empirical Orthogonal...

  7. Biodiversity of entomopathogenic nematodes in Italy.

    Science.gov (United States)

    Tarasco, E; Clausi, M; Rappazzo, G; Panzavolta, T; Curto, G; Sorino, R; Oreste, M; Longo, A; Leone, D; Tiberi, R; Vinciguerra, M T; Triggiani, O

    2015-05-01

    An investigation was carried out on the distribution and biodiversity of steinernematid and heterorhabdtid entomopathogenic nematodes (EPN) in nine regions of Italy in the period 1990-2010. More than 2000 samples were collected from 580 localities and 133 of them yielded EPN specimens. A mapping of EPN distribution in Italy showed 133 indigenous EPN strains belonging to 12 species: 43 isolates of Heterorhabditis bacteriophora, 1 of H. downesi, 1 of H. megidis, 51 of Steinernema feltiae, 12 of S. affine, 4 of S. kraussei, 8 of S. apuliae, 5 of S. ichnusae, 3 of S. carpocapsae, 1 of S. vulcanicum, 3 of Steinernema 'isolate S.sp.MY7' of 'S. intermedium group' and 1 of S. arenarium. Steinernematids are more widespread than heterorhabditids and S. feltiae and H. bacteriophora are the most commonly encountered species. Sampling sites were grouped into 11 habitats: uncultivated land, orchard, field, sea coast, pinewood, broadleaf wood, grasslands, river and lake borders, caves, salt pan and moist zones; the soil texture of each site was defined and the preferences of habitat and soil texture of each species was assessed. Except for the two dominant species, S. feltiae and H. bacteriophora, EPN occurrence tends to be correlated with a specific vegetation habitat. Steinernema kraussei, H. downesi and H. megidis were collected only in Sicily and three of the species recently described - S. apuliae, S. ichnusae and S. vulcanicum - are known only from Italy and seem to be endemic.

  8. GABA localization in the nematode Ascaris

    Energy Technology Data Exchange (ETDEWEB)

    Guastella, J.

    1988-01-01

    A histochemical approach was used to examine the distribution of GABA-associated neurons in the nematode Ascaris, an organism whose small number of morphologically simple neurons make it an excellent preparation for analyzing neuronal phenotypes. Two GABAergic markers were examined: GABA-like immunoreactivity (GLIR), a marker for endogenous stores of GABA; and ({sup 3}H)-GABA uptake, a marker for GABA uptake sites. Strong GLIR was present in the cell bodies, neurites and commissures of dorsal and ventral inhibitory motorneurons present in this region. Strong GLIR was also present in the cell bodies and processes of the four RME neurons in the nerve ring and in several other ganglionic neurons. Staining was absent in excitatory motorneurons, in ventral cord interneurons and in muscle cells and hypodermis. GABA uptake sites were found in single neural processes in both the ventral and dorsal nerve cords. ({sup 3}H)-GABA labeling was also observed in the other two RME cells and several other cephalic neurons. Four putative cholinergic excitatory motorneurons in the retrovesicular ganglion (RVG) were heavily labeled. Ventral and dorsal nerve cord inhibitory motorneurons did not take up ({sup 3}H)-GABA. Labeling of the ventral cord excitatory motorneuron somata and cell bodies was at or slightly above background. Heavy labeling of muscle cells was also observed.

  9. Organic analysis of the Antarctic carbonaceous chondrites

    Science.gov (United States)

    Kotra, R. K.; Shimoyama, A.; Ponnamperuma, C.; Hare, P. E.; Yanai, K.

    1981-01-01

    Thus far, organic analysis of carbonaceous chondrites has proven the only fruitful means of examining complex organic matter of extraterrestrial origin. The present paper presents the results of organic analysis of two Antarctic meteorites, Allan Hills (77306) and Yamato (74662), which may be considered free from terrestrial contamination. Ion-exchange chromatography, gas chromatography and mass spectrometery of meteorite samples reveal the presence in Yamato of 15 and in Allan Hills of 20 protein and nonprotein amino acids, the most abundant of which are glycine and alanine. Abundances of the D and L enantiomers of each amino acid are also found to be nearly equal. Data thus indicate an abiotic extraterrestrial origin for the matter, and confirm a lack of terrestrial contamination.

  10. An Antarctic molluscan biomineralisation tool-kit

    Science.gov (United States)

    Sleight, Victoria A.; Marie, Benjamin; Jackson, Daniel J.; Dyrynda, Elisabeth A.; Marie, Arul; Clark, Melody S.

    2016-11-01

    The Antarctic clam Laternula elliptica lives almost permanently below 0 °C and therefore is a valuable and tractable model to study the mechanisms of biomineralisation in cold water. The present study employed a multidisciplinary approach using histology, immunohistochemistry, electron microscopy, proteomics and gene expression to investigate this process. Thirty seven proteins were identified via proteomic extraction of the nacreous shell layer, including two not previously found in nacre; a novel T-rich Mucin-like protein and a Zinc-dependent metalloprotease. In situ hybridisation of seven candidate biomineralisation genes revealed discrete spatial expression patterns within the mantle tissue, hinting at modular organisation, which is also observed in the mantle tissues of other molluscs. All seven of these biomineralisation candidates displayed evidence of multifunctionality and strong association with vesicles, which are potentially involved in shell secretion in this species.

  11. Joint Antarctic School Expedition - An International Collaboration for High School Students and Teachers on Antarctic Science

    Science.gov (United States)

    Botella, J.; Warburton, J.; Bartholow, S.; Reed, L. F.

    2014-12-01

    The Joint Antarctic School Expedition (JASE) is an international collaboration program between high school students and teachers from the United States and Chile aimed at providing the skills required for establishing the scientific international collaborations that our globalized world demands, and to develop a new approach for science education. The National Antarctic Programs of Chile and the United States worked together on a pilot program that brought high school students and teachers from both countries to Punta Arenas, Chile, in February 2014. The goals of this project included strengthening the partnership between the two countries, and building relationships between future generations of scientists, while developing the students' awareness of global scientific issues and expanding their knowledge and interest in Antarctica and polar science. A big component of the project involved the sharing by students of the acquired knowledge and experiences with the general public. JASE is based on the successful Chilean Antarctic Science Fair developed by Chile´s Antarctic Research Institute. For 10 years, small groups of Chilean students, each mentored by a teacher, perform experimental or bibliographical Antarctic research. Winning teams are awarded an expedition to the Chilean research station on King George Island. In 2014, the Chileans invited US participation in this program in order to strengthen science ties for upcoming generations. On King George Island, students have hands-on experiences conducting experiments and learning about field research. While the total number of students directly involved in the program is relatively small, the sharing of the experience by students with the general public is a novel approach to science education. Research experiences for students, like JASE, are important as they influence new direction for students in science learning, science interest, and help increase science knowledge. We will share experiences with the

  12. Origin and sources of dissolved organic matter in snow on the East Antarctic ice sheet.

    Science.gov (United States)

    Antony, Runa; Grannas, Amanda M; Willoughby, Amanda S; Sleighter, Rachel L; Thamban, Meloth; Hatcher, Patrick G

    2014-06-03

    Polar ice sheets hold a significant pool of the world's carbon reserve and are an integral component of the global carbon cycle. Yet, organic carbon composition and cycling in these systems is least understood. Here, we use ultrahigh resolution mass spectrometry to elucidate, at an unprecedented level, molecular details of dissolved organic matter (DOM) in Antarctic snow. Tens of thousands of distinct molecular species are identified, providing clues to the nature and sources of organic carbon in Antarctica. We show that many of the identified supraglacial organic matter formulas are consistent with material from microbial sources, and terrestrial inputs of vascular plant-derived materials are likely more important sources of organic carbon to Antarctica than previously thought. Black carbon-like material apparently originating from biomass burning in South America is also present, while a smaller fraction originated from soil humics and appears to be photochemically or microbially modified. In addition to remote continental sources, we document signals of oceanic emissions of primary aerosols and secondary organic aerosol precursors. The new insights on the diversity of organic species in Antarctic snowpack reinforce the importance of studying organic carbon associated with the Earth's polar regions in the face of changing climate.

  13. Taxonomy, morphology and phylogenetics of coffee-associated root-lesion nematodes, Pratylenchus spp

    Science.gov (United States)

    Technical Abstract: Although lesion nematodes (Pratylenchus species) can reduce coffee yield worldwide, methods for their identification are often difficult to implement. This review summarizes the diagnostic morphological features for distinguishing the eight previously described lesion nematode sp...

  14. Plant and soil nematodes from Lokchao Yangoupokpi Wildlife Sanctuary, Manipur, India

    Directory of Open Access Journals (Sweden)

    N. Mohilal

    2009-03-01

    Full Text Available In the present study soil samples were collected from Lokchao Yangoupokpi Wildlife Sanctuary to investigate about what nematode species are associated with different plant hosts. This study shows rich nematode diversity in the sanctuary.

  15. Arctic and Antarctic sea ice and climate

    Science.gov (United States)

    Barreira, S.

    2014-12-01

    Principal Components Analysis in T-Mode Varimax rotated was performed on Antarctic and Arctic monthly sea ice concentration anomalies (SICA) fields for the period 1979-2014, in order to investigate which are the main spatial characteristics of sea ice and its relationship with atmospheric circulation. This analysis provides 5 patterns of sea ice for inter-spring period and 3 patterns for summer-autumn for Antarctica (69,2% of the total variance) and 3 different patterns for summer-autumn and 3 for winter-spring season for the Arctic Ocean (67,8% of the total variance).Each of these patterns has a positive and negative phase. We used the Monthly Polar Gridded Sea Ice Concentrations database derived from satellite information generated by NASA Team algorithm. To understand the links between the SICA and climate trends, we extracted the mean pressure and, temperature field patterns for the months with high loadings (positive or negative) of the sea ice patterns that gave distinct atmospheric structures associated with each one. For Antarctica, the first SICA spatial winter-spring pattern in positive phase shows a negative SICA centre over the Drake Passage and north region of Bellingshausen and Weddell Seas together with another negative SICA centre over the East Indian Ocean. Strong positive centres over the rest of the Atlantic and Indian Oceans basins and the Amundsen Sea are also presented. A strong negative pressure anomaly covers most of the Antarctic Continent centered over the Bellingshausen Sea accompanied by three positive pressure anomalies in middle-latitudes. During recent years, the Arctic showed persistent associations of sea-ice and climate patterns principally during summer. Our strongest summer-autumn pattern in negative phase showed a marked reduction on SICA over western Arctic, primarily linked to an overall increase in Arctic atmospheric temperature most pronounced over the Beaufort, Chukchi and East Siberian Seas, and a positive anomaly of

  16. Morphogenesis of Antarctic Paleosols: Martian Analogue

    Science.gov (United States)

    Mahaney, W. C.; Dohm, J. M.; Baker, V. R.; Newsom, Horton E.; Malloch, D.; Hancock, R. G. V.; Campbell, Iain; Sheppard, D.; Milner, M. W.

    2001-11-01

    Samples of horizons in paleosols from the Quartermain Mountains of the Antarctic Dry Valleys (Aztec and New Mountain areas) were analyzed for their physical characteristics, mineralogy, chemical composition, and microbiology to determine the accumulation and movement of salts and other soluble constituents and the presence/absence of microbial populations. Salt concentrations are of special interest because they are considered to be a function of age, derived over time, in part from nearby oceanic and high-altitude atmospheric sources. The chemical composition of ancient Miocene-age paleosols in these areas is the direct result of the deposition and weathering of airborne-influxed salts and other materials, as well as the weathering of till derived principally from local dolerite and sandstone outcrops. Paleosols nearer the coast have greater contents of Cl, whereas near the inland ice sheet, nitrogen tends to increase on a relative basis. The accumulation and vertical distribution of salts and other soluble chemical elements indicate relative amounts of movement in the profile over long periods of time, in the order of several million years. Four of the six selected subsamples from paleosol horizons in two ancient soil profiles contained nil concentrations of bacteria and fungi. However, two horizons at depths of between 3 and 8 cm, in two profiles, yielded several colonies of the fungi Beauveria bassiana and Penicillium brevicompactum, indicating very minor input of organic carbon. Beauveria bassiana is often reported in association with insects and is used commercially for the biological control of some insect pests. Penicillium species are commonly isolated from Arctic, temperate, and tropical soils and are known to utilize a wide variety of organic carbon and nitrogen compounds. The cold, dry soils of the Antarctic bear a close resemblance to various present and past martian environments where similar weathering could occur and possible microbial populations

  17. Depth and density of the Antarctic firn layer

    OpenAIRE

    2008-01-01

    The depth and density of the Antarctic firn layer is modeled, using a combination of regional climate model output and a steady-state firn densification model. The modeled near-surface climate (temperature, wind speed, and accumulation) and the depth of two critical density levels (550 kg m−3 and 830 kg m−3) agree well with climate and firn density observations selected from >50 Antarctic coring sites (r = 0.90–0.99, p

  18. The present and future state of the Antarctic firn layer

    OpenAIRE

    2014-01-01

    Firn is the transitional product between fresh snow and glacier ice and acts as a boundary between the atmosphere and the glacier ice of the Antarctic Ice Sheet (AIS). Spatiotemporal variations in firn layer characteristics are therefore important to consider when assessing the mass balance of the AIS. In this thesis, a firn densification model, forced with a realistic climate, is used to examine contemporary (1979-2012) and future (2000-2200) variations in the Antarctic firn layer. Currently...

  19. The dual effects of root-cap exudates on nematodes: from quiescence in plant-parasitic nematodes to frenzy in entomopathogenic nematodes.

    Science.gov (United States)

    Hiltpold, Ivan; Jaffuel, Geoffrey; Turlings, Ted C J

    2015-02-01

    To defend themselves against herbivores and pathogens, plants produce numerous secondary metabolites, either constitutively or de novo in response to attacks. An intriguing constitutive example is the exudate produced by certain root-cap cells that can induce a state of reversible quiescence in plant-parasitic nematodes, thereby providing protection against these antagonists. The effect of such root exudates on beneficial entomopathogenic nematodes (EPNs) remains unclear, but could potentially impair their use in pest management programmes. We therefore tested how the exudates secreted by green pea (Pisum sativum) root caps affect four commercial EPN species. The exudates induced reversible quiescence in all EPN species tested. Quiescence levels varied with the green pea cultivars tested. Notably, after storage in root exudate, EPN performance traits were maintained over time, whereas performances of EPNs stored in water rapidly declined. In sharp contrast to high concentrations, lower concentrations of the exudate resulted in a significant increase in EPN activity and infectiousness, but still reduced the activity of two plant-parasitic nematode species. Our study suggests a finely tuned dual bioactivity of the exudate from green pea root caps. Appropriately formulated, it can favour long-term storage of EPNs and boost their infectiousness, while it may also be used to protect plants from plant-parasitic nematodes.

  20. Variation in the susceptibility of Drosophila to different entomopathogenic nematodes.

    Science.gov (United States)

    Peña, Jennifer M; Carrillo, Mayra A; Hallem, Elissa A

    2015-03-01

    Entomopathogenic nematodes (EPNs) in the genera Heterorhabditis and Steinernema are lethal parasites of insects that are of interest as models for understanding parasite-host interactions and as biocontrol agents for insect pests. EPNs harbor a bacterial endosymbiont in their gut that assists in insect killing. EPNs are capable of infecting and killing a wide range of insects, yet how the nematodes and their bacterial endosymbionts interact with the insect immune system is poorly understood. Here, we develop a versatile model system for understanding the insect immune response to parasitic nematode infection that consists of seven species of EPNs as model parasites and five species of Drosophila fruit flies as model hosts. We show that the EPN Steinernema carpocapsae, which is widely used for insect control, is capable of infecting and killing D. melanogaster larvae. S. carpocapsae is associated with the bacterium Xenorhabdus nematophila, and we show that X. nematophila induces expression of a subset of antimicrobial peptide genes and suppresses the melanization response to the nematode. We further show that EPNs vary in their virulence toward D. melanogaster and that Drosophila species vary in their susceptibilities to EPN infection. Differences in virulence among different EPN-host combinations result from differences in both rates of infection and rates of postinfection survival. Our results establish a powerful model system for understanding mechanisms of host-parasite interactions and the insect immune response to parasitic nematode infection.

  1. The collective motion of nematodes in a thin liquid layer

    CERN Document Server

    Gart, Sean; Jung, Sunghwan

    2010-01-01

    Many organisms live in confined fluidic environments such as the thin liquid layers on the skin of host organisms or in partially- saturated soil. We investigate the collective behaviour of nematodes in a thin liquid layer, which was first observed by Gray and Lissmann, [J. Exp. Biol. 41, 135 (1964)]. We show experimentally that nematodes confined by a thin liquid film come into contact and only separate again after some intervention. We attribute this collective motion to an attractive force between them arising from the surface tension of the layer and show that for nearby nematodes this force is typically stronger than the force that may be exerted by the nematodes' muscles. We believe this to be the first demonstration of the "Cheerios effect" acting on a living organism. However, we find that being grouped together does not significantly alter the body stroke and kinematic performance of the nematode: there are no statistically significant changes of the Strouhal number and the ratio of amplitude to wave...

  2. Nematode Chemotaxis: Gradual Turns, Sharp Turns, and Modulated Turn Angles

    Science.gov (United States)

    Patel, Amar; Padmanabhan, Venkat; Rumbaugh, Kendra; Vanapalli, Siva; Blawzdziewicz, Jerzy

    2013-03-01

    We examine strategies used by the soil-dwelling nematode Caenorhabditis Elegans for chemotaxis in complex environments. The proposed description is based on our recently developed piecewise-harmonic-curvature model of nematode locomotion [PLoS ONE, 7(7) e40121 (2012)], where random harmonic-curvature modes represent elementary locomotory movements. We show that the previously described gradual-turn and sharp-turn chemotaxis strategies can be unified in our model. The gradual-turn mechanism relies on crawling amplitude changes commensurate with the undulation frequency. The sharp-turn mechanism consists in modulation of the frequency of jumps to large-amplitude modes. We hypothesize that there exists a third strategy, where the nematode adjusts the variance of the amplitude distribution. Such adjustments result in a modulation of the magnitude of random turns, with smaller turns performed when the nematode moves toward the increasing chemoatractant concentration. Experiments are proposed to determine if the third strategy is present in the nematode behavior. This work was supported by NSF grant No. CBET 1059745.

  3. Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes.

    Science.gov (United States)

    Damiani, Isabelle; Baldacci-Cresp, Fabien; Hopkins, Julie; Andrio, Emilie; Balzergue, Sandrine; Lecomte, Philippe; Puppo, Alain; Abad, Pierre; Favery, Bruno; Hérouart, Didier

    2012-04-01

    The establishment and development of plant-microorganism interactions involve impressive transcriptomic reprogramming of target plant genes. The symbiont (Sinorhizobium meliloti) and the root knot-nematode pathogen (Meloidogyne incognita) induce the formation of new root organs, the nodule and the gall, respectively. Using laser-assisted microdissection, we specifically monitored, at the cell level, Medicago gene expression in nodule zone II cells, which are preparing to receive rhizobia, and in gall giant and surrounding cells, which play an essential role in nematode feeding and constitute the typical root swollen structure, respectively. We revealed an important reprogramming of hormone pathways and C1 metabolism in both interactions, which may play key roles in nodule and gall neoformation, rhizobia endocytosis and nematode feeding. Common functions targeted by rhizobia and nematodes were mainly down-regulated, whereas the specificity of the interaction appeared to involve up-regulated genes. Our transcriptomic results provide powerful datasets to unravel the mechanisms involved in the accommodation of rhizobia and root-knot nematodes. Moreover, they raise the question of host specificity and the evolution of plant infection mechanisms by a symbiont and a pathogen.

  4. On the cultivation of free-living marine and estuarine nematodes

    OpenAIRE

    T. Moens; Vincx, M.

    1998-01-01

    Although a large body of literature exists on the systematics and ecology of free-living marine and brackish-water nematodes, key questions on the nature and magnitude of interactions between nematodes and other organisms in the benthos remain unanswered. Relatively few authors have investigated live nematodes in food web studies or in experiments dealing with the nematodes' response to a varying environment. It is mainly for the latter purpose that attempts have been made to maintain, rear a...

  5. Antarctic marine biodiversity and deep-sea hydrothermal vents.

    Science.gov (United States)

    Chown, Steven L

    2012-01-01

    The diversity of many marine benthic groups is unlike that of most other taxa. Rather than declining from the tropics to the poles, much of the benthos shows high diversity in the Southern Ocean. Moreover, many species are unique to the Antarctic region. Recent work has shown that this is also true of the communities of Antarctic deep-sea hydrothermal vents. Vent ecosystems have been documented from many sites across the globe, associated with the thermally and chemically variable habitats found around these, typically high temperature, streams that are rich in reduced compounds and polymetallic sulphides. The animal communities of the East Scotia Ridge vent ecosystems are very different to those elsewhere, though the microbiota, which form the basis of vent food webs, show less differentiation. Much of the biological significance of deep-sea hydrothermal vents lies in their biodiversity, the diverse biochemistry of their bacteria, the remarkable symbioses among many of the marine animals and these bacteria, and the prospects that investigations of these systems hold for understanding the conditions that may have led to the first appearance of life. The discovery of diverse and unusual Antarctic hydrothermal vent ecosystems provides opportunities for new understanding in these fields. Moreover, the Antarctic vents south of 60°S benefit from automatic conservation under the Convention on the Conservation of Antarctic Marine Living Resources and the Antarctic Treaty. Other deep-sea hydrothermal vents located in international waters are not protected and may be threatened by growing interests in deep-sea mining.

  6. Parasites of the Antarctic toothfish (Dissostichus mawsoni Norman, 1937 (Perciformes, Nototheniidae in the Pacific sector of the Antarctic

    Directory of Open Access Journals (Sweden)

    Ilya I. Gordeev

    2016-06-01

    Full Text Available The Antarctic toothfish (Dissostichus mawsoni Norman, 1937 is one of the main target species of commercial fisheries in the Antarctic. It is an endemic and is found along the shelf of Antarctica, as well as on the slopes of seamounts, underwater elevations and islands in the sub-Antarctic. It feeds on a variety of fish and cephalopods and can be an intermediate/paratenic host of some helminthes, whose final hosts are whales, seals, large rays and sharks. This article presents new data on toothfish infection in the Pacific sector of the Antarctic. Specimens were examined during commercial longline fishing in the Ross Sea and the Amundsen Sea in January–February 2013. Fourteen species of parasites were found using standard parasitological methods and genetic analysis.

  7. 7 CFR 301.85-9 - Movement of live golden nematodes.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Movement of live golden nematodes. 301.85-9 Section... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Golden Nematode Quarantine and Regulations § 301.85-9 Movement of live golden nematodes. Regulations requiring a permit for and...

  8. High-throughput sequencing of nematode communities from total soil DNA extractions

    DEFF Research Database (Denmark)

    Sapkota, Rumakanta; Nicolaisen, Mogens

    2015-01-01

    nematodes without the need for enrichment was developed. Using this strategy on DNA templates from a set of 22 agricultural soils, we obtained 64.4% sequences of nematode origin in total, whereas the remaining sequences were almost entirely from other metazoans. The nematode sequences were derived from...

  9. A SNARE-like protein and biotin are implicated in soybean cyst nematode virulence

    Science.gov (United States)

    Some phytoparasitic nematodes have the ability to infect and reproduce on plants that are normally considered resistant to nematode infection. Such nematodes are referred to as virulent and the mechanisms they use to evade or suppress host plant defenses are not well understood. Here, we report the ...

  10. Microsatellites of the parasitic nematode Haemonchus contortus: polymorphism and linkage with a direct repeat

    NARCIS (Netherlands)

    Hoekstra, R.; Criado-Fornelio, A.; Fakkeldij, J.; Bergman, J.; Roos, M.H.

    1997-01-01

    To develop tools to analyse parasitic nematode population structures and the effects of selection pressure on the nematode population, we isolated and characterised 13 microsatellite markers of the nematode Haemonchus contortus. The density of CA/GT microsatellites, once in 575 kb, is lower than in

  11. Trapping of root-knot nematodes by the adhesive hyphae-forming fungus Arthrobotrys oligospora.

    NARCIS (Netherlands)

    den Belder, E.

    1994-01-01

    The present study addresses the ecology of a particular isolate of Arthrobotrys oligospora (CBS 289.82) in relation to its efficacy in controlling the root-knot nematode, Meloidogyne hapla.This isolate was selected because it differs from most nematode-trapping fungi in that it captures nematodes wi

  12. Towards isolation of the tomato root-knot nematode resistance gene Mi via positional cloning.

    NARCIS (Netherlands)

    Daelen, van R.A.J.J.

    1995-01-01

    Root-knot nematodes of the genus Meloidogyne are severe pathogens of plants and worldwide they cause damage to many economically important crops like potato, rice, cotton, and tomato. So the control of nematodes and the protection of plants against nematode damage are matters of major concern. Some

  13. Diversity, Host Specialization, and Geographic Structure of Filarial Nematodes Infecting Malagasy Bats.

    Science.gov (United States)

    Ramasindrazana, Beza; Dellagi, Koussay; Lagadec, Erwan; Randrianarivelojosia, Milijaona; Goodman, Steven M; Tortosa, Pablo

    2016-01-01

    We investigated filarial infection in Malagasy bats to gain insights into the diversity of these parasites and explore the factors shaping their distribution. Samples were obtained from 947 individual bats collected from 52 sites on Madagascar and representing 31 of the 44 species currently recognized on the island. Samples were screened for the presence of micro- and macro-parasites through both molecular and morphological approaches. Phylogenetic analyses showed that filarial diversity in Malagasy bats formed three main groups, the most common represented by Litomosa spp. infecting Miniopterus spp. (Miniopteridae); a second group infecting Pipistrellus cf. hesperidus (Vespertilionidae) embedded within the Litomosoides cluster, which is recognized herein for the first time from Madagascar; and a third group composed of lineages with no clear genetic relationship to both previously described filarial nematodes and found in M. griveaudi, Myotis goudoti, Neoromicia matroka (Vespertilionidae), Otomops madagascariensis (Molossidae), and Paratriaenops furculus (Hipposideridae). We further analyzed the infection rates and distribution pattern of Litomosa spp., which was the most diverse and prevalent filarial taxon in our sample. Filarial infection was disproportionally more common in males than females in Miniopterus spp., which might be explained by some aspect of roosting behavior of these cave-dwelling bats. We also found marked geographic structure in the three Litomosa clades, mainly linked to bioclimatic conditions rather than host-parasite associations. While this study demonstrates distinct patterns of filarial nematode infection in Malagasy bats and highlights potential drivers of associated geographic distributions, future work should focus on their alpha taxonomy and characterize arthropod vectors.

  14. Steinernema goweni n. sp. (Rhabditida: Steinernematidae), a new entomopathogenic nematode from Zulia State, Venezuela.

    Science.gov (United States)

    San-Blas, Ernesto; Morales-Montero, Patricia; Portillo, Edgar; Nermuť, Jiří; Puza, Vladimir

    2016-01-21

    A nematode from the genus Steinernema was isolated in Zulia state (North-western, Venezuela). Morphological, morphometric and molecular studies indicated that this nematode belongs to the "bicornutum" group and is described herein as Steinernema goweni n. sp. Steinernema goweni n. sp. is characterised by morphometrics of its infective juveniles, with body length 640 (531-719) µm, pharynx length of 119 (109-126) µm, tail of 67 (59-89) µm, c ratio = 9 (6-11) and E% = 77 (48-94). First generation male specimens can be recognised by the shape and size of spicules (55 (50-57) µm long) and gubernaculum (35 (30-40) µm long), and %D value 42 (28-59), which is at the lower limit within the "bicornutum" group. The number of genital papillae in males is also distinctive for S. goweni n. sp. presenting up to 27 (13 pairs + 1) papillae in 15% of specimens. The phasmids can be seen in scanning electron microscopy in all stages, characters not previously reported within the "bicornutum" group. Phylogenetic analyses of the "bicornutum" group based on both ITS and D2D3 regions showed a clear separation of S. goweni n. sp. from the other species. In both analyses S. goweni n. sp. formed a strongly supported group of American species.

  15. Phylogenetics and evolution of nematode-trapping fungi (Orbiliales) estimated from nuclear and protein coding genes.

    Science.gov (United States)

    Li, Yan; Hyde, Kevin D; Jeewon, Rajesh; Cai, Lei; Vijaykrishna, Dhanasekaran; Zhang, Keqin

    2005-01-01

    The systematic classification of nematode-trapping fungi is redefined based on phylogenies inferred from sequence analyses of 28S rDNA, 5.8S rDNA and beta-tubulin genes. Molecular data were analyzed with maximum parsimony, maximum likelihood and Bayesian analysis. An emended generic concept of nematode-trapping fungi is provided. Arthrobotrys is characterized by adhesive networks, Dactylellina by adhesive knobs, and Drechslerella by constricting-rings. Phylogenetic placement of taxa characterized by stalked adhesive knobs and non-constricting rings also is confirmed in Dactylellina. Species that produce unstalked adhesive knobs that grow out to form loops are transferred from Gamsylella to Dactylellina, and those that produce unstalked adhesive knobs that grow out to form networks are transferred from Gamsylella to Arthrobotrys. Gamsylella as currently circumscribed cannot be treated as a valid genus. A hypothesis for the evolution of trapping-devices is presented based on multiple gene data and morphological studies. Predatory and nonpredatory fungi appear to have been derived from nonpredatory members of Orbilia. The adhesive knob is considered to be the ancestral type of trapping device from which constricting rings and networks were derived via two pathways. In the first pathway adhesive knobs retained their adhesive material forming simple two-dimension networks, eventually forming complex three-dimension networks. In the second pathway adhesive knobs lost their adhesive materials, with their ends meeting to form nonconstricting rings and they in turn formed constricting rings with three inflated-cells.

  16. Confirmation of root-knot nematode resistant gene Rmi1 using SSR markers

    Directory of Open Access Journals (Sweden)

    Musarrat Ramzan

    2017-02-01

    Full Text Available Background: The Root Knot Nematode (RKN is a serious economic threat to various cultivated crops worldwide. It is a devastating pest of soybean and responsible to cause severe yield loss in Pakistan. The cultivation of resistant soybean varieties against this pest is the sustainable strategy to manage the heavy loss and increase yield. There is an utmost need to identify RKN resistant varieties of soybean against cultivated in Pakistan. The presented study is an attempt to identify and confirm the presence of resistant gene Rmi1 in soybean. Method: Molecular studies have been done using Simple Sequence Repeat (SSR marker system to identify resistant soybean varieties against Root Knot Nematode (RKN using fifteen (15 indigenous cultivars and four (4 US cultivars. DNA was isolated, purified, quantified and then used to employ various SSR markers. The amplified product is observed using gel documentation system after electrophoresis. Results: Diagnostic SSR markers Satt-358 and Satt-492 have shown the presence of Rmi1 gene in all resistance carrying genotypes. Satt-358 amplified the fragment of 200 bp and Satt-492 generated 232 bp bands in all resistant genotypes. This study confirmed the Rmi gene locus (G248A-1 in all internationally confirmed resistant including six (6 native varieties. Conclusion: These investigations have identified six (6 resistant cultivars revealing the effective and informative sources that can be utilized in breeding programs for the selection of RKN resistance soybean genotypes in Pakistan.

  17. The development of RNA interference (RNAi) in gastrointestinal nematodes.

    Science.gov (United States)

    Selkirk, Murray E; Huang, Stanley C; Knox, David P; Britton, Collette

    2012-04-01

    Despite the utility of RNAi for defining gene function in Caenorhabditis elegans and early successes reported in parasitic nematodes, RNAi has proven to be stubbornly inconsistent or ineffective in the animal parasitic nematodes examined to date. Here, we summarise some of our experiences with RNAi in parasitic nematodes affecting animals and discuss the available data in the context of our own unpublished work, taking account of mode of delivery, larval activation, site of gene transcription and the presence/absence of essential RNAi pathway genes as defined by comparisons to C. elegans. We discuss future directions briefly including the evaluation of nanoparticles as a means to enhance delivery of interfering RNA to the target worm tissue.

  18. Extraintestinal nematode infections of red foxes (Vulpes vulpes) in Hungary.

    Science.gov (United States)

    Sréter, T; Széll, Z; Marucci, G; Pozio, E; Varga, I

    2003-08-14

    A survey was carried out to investigate the prevalence and worm burden of extraintestinal nematodes in 100 red foxes (Vulpes vulpes) of Hungary. The overall prevalence of nematode infections of the respiratory tract was 76%. Eucoleus aerophilus (Capillaria aerophila) was the predominant species (66%), followed by Crenosoma vulpis (24%), Eucoleus (Capillaria) böhmi (8%) and Angiostrongylus vasorum (5%). Pearsonema (Capillaria) plica was found in 52% of the urinary bladders. In 3% of the foxes, Trichinella britovi was present in muscle samples. The high prevalence of lungworms and P. plica and the fox colonisation in urban areas may enhance the prevalence of these nematode infections in domestic dogs and cats, and the flow of T. britovi from the sylvatic cycle to the domestic cycle, enhancing the risk of infections in humans.

  19. Nematodes of elasmobranch fishes from the southern coast of Brazil

    Directory of Open Access Journals (Sweden)

    Marcelo Knoff

    2001-01-01

    Full Text Available New records for nematode species recovered from elasmobranch fishes in Brazil are established and new systematical arrangements proposed. Parascarophis sphyrnae Campana-Rouget, 1955 from the spiral valve of Sphyrna zygaena is referred for the first time in South America as a new host record. Procamallanus (S. pereirai Annereaux, 1946, from the spiral valve of Raja castelnaui is reported parasitizing an elasmobranch host. Nematode larvae of the genera Anisakis, Contracaecum, Pseudoterranova and Raphidascaris are listed from the stomach and spiral valves of several hosts. Anisakidae larvae previously referred in Brazil in the genus Phocanema should be reallocated in Pseudoterranova. Nematodes of the genera Anisakis, Contracaecum, Pseudoterranova and Raphidascaris are reported for the first time parasitizing elasmobranchs in Brazil.

  20. Viability and Virulence of Entomopathogenic Nematodes Exposed to Ultraviolet Radiation.

    Science.gov (United States)

    Shapiro-Ilan, David I; Hazir, Selcuk; Lete, Luis

    2015-09-01

    Entomopathogenic nematodes (EPNs) can be highly effective biocontrol agents, but their efficacy can be reduced due to exposure to environmental stress such as from ultraviolet (UV) radiation. Our objectives were to 1) compare UV tolerance among a broad array of EPN species, and 2) investigate the relationship between reduced nematode viability (after exposure to UV) and virulence. Nematodes exposed to a UV radiation (254 nm) for 10 or 20 min were assessed separately for viability (survival) and virulence to Galleria mellonella. We compared 9 different EPN species and 15 strains: Heterorhabditis bacteriophora (Baine, fl11, Oswego, and Vs strains), H. floridensis (332), H. georgiana (Kesha), H. indica (HOM1), H. megidis (UK211), Steinernema carpocapsae (All, Cxrd, DD136, and Sal strains), S. feltiae (SN), S. rarum (17C&E), and S. riobrave (355). In viability assessments, steinernematids, particularly strains of S. carpocapsae, generally exhibited superior UV tolerance compared with the heterorhabditids. However, some heterorhabditids tended to be more tolerant than others, e.g., H. megidis and H. bacteriophora (Baine) were most susceptible and H. bacteriophora (Vs) was the only heterorhabditid that did not exhibit a significant effect after 10 min of exposure. All heterorhabditids experienced reduced viability after 20 min exposure though several S. carpocapsae strains did not. In total, after 10 or 20 min exposure, the viability of seven nematode strains did not differ from their non-UV exposed controls. In virulence assays, steinernematids (particularly S. carpocapsae strains) also tended to exhibit higher UV tolerance. However, in contrast to the viability measurements, all nematodes experienced a reduction in virulence relative to their controls. Correlation analysis revealed that viability among nematode strains is not necessarily related to virulence. In conclusion, our results indicate that the impact of UV varies substantially among EPNs, and viability alone

  1. The circum-Antarctic sedimentary record; a dowsing rod for Antarctic ice in the Eocene

    Science.gov (United States)

    Scher, H.

    2012-12-01

    Arguments for short-lived Antarctic glacial events during the Eocene (55-34 Ma) are compelling, however the paleoceanographic proxy records upon which these arguments are based (e.g., benthic δ18O, eustatic sea level, deep sea carbonate deposition) are global signals in which the role of Antarctic ice volume variability is ambiguous. That is to say, the proxy response to ice volume may be masked other processes. As a result broad correlations between proxies for ice volume are lacking during suspected Eocene glacial events. I will present a more direct approach for detecting Antarctic ice sheets in the Eocene; utilizing provenance information derived from the radiogenic isotopic composition of the terrigenous component of marine sediments near Antarctica. The method relies on knowledge that marine sediments represent a mixture derived from different basement terrains with different isotopic fingerprints. A key issue when using sedimentary deposits to characterize continental sediment sources is to deconvolve different sources from the mixed signal of the bulk sample. The pioneering work of Roy et al. (2007) and van de Flierdt et al. (2007) represents a major advance in Antarctic provenance studies. It is now known that the isotopic composition of neodymium (Nd) and hafnium (Hf) in modern circum-Antarctic sediments are distributed in a pattern that mimics the basement age of sediment sources around Antarctica. For this study I selected two Ocean Drilling Program (ODP) sites on southern Kerguelen Plateau (ODP Sites 738 and 748) because of their proximity to Prydz Bay, where Precambrian sediment sources contribute to extremely nonradiogenic isotopic signatures in modern sediments in the Prydz Bay region. New detrital Nd isotope records from these sediment cores reveal an Nd isotope excursion at the Bartonian/Priabonian boundary (ca. 37 Ma) that coincides with a 0.5 ‰ increase in benthic foram δ18O values. Detrital sediment ɛNd values are around -12 in intervals

  2. An evolutionary perspective on gastrointestinal nematodes of sheep.

    Science.gov (United States)

    Stear, M J; Singleton, D; Matthews, L

    2011-06-01

    The purpose of this paper was to discuss from an evolutionary perspective the interaction between domestic sheep (Ovis aries) and their gastrointestinal nematodes. Although evolution is the central theme of biology, there has been little attempt to consider how evolutionary forces have shaped and continue to shape the relationships between domestic animals and their parasite community. Mathematical modelling of the host-parasite relationship indicated that the system is remarkably robust to perturbations in its parameters. This robustness may be a consequence of the long coevolution of host and parasites. Although nematodes can potentially evolve faster than the host, coevolution is not dominated by the parasite and there are several examples where breeds of cattle or sheep have evolved high levels of resistance to disease. Coevolution is a more equal partnership between host and nematode than is commonly assumed. Coevolution between parasites and the host immune system is often described as an arms race where both host immune response genes and parasite proteins evolve rapidly in response to each other. However, initial results indicate that nematode antigens are not evolving rapidly; the arms race between the immune system and nematodes, if it exists, is happening very slowly. Fisher's fundamental theorem of natural selection states that genes with positive effects on fitness will be fixed by natural selection. Consequently, heritable variation in fitness traits is expected to be low. Contrary to this argument, there is considerable genetic variation in resistance to nematode infection. In particular, the heritabilities of nematode-specific IgA and IgE activity are moderate to high. The reasons for this apparent violation of the fundamental theorem of natural selection are not clear but several possible explanations are explored. Faecal nematode egg counts increase at the beginning of the grazing season - a phenomenon known as the periparturient rise. This

  3. Studies onPaecilomyces marquandii from nematode suppressive chinampa soils.

    Science.gov (United States)

    Marban-Mendoza, N; Garcia-E, R; Dicklow, M B; Zuckerman, B M

    1992-05-01

    Two applications of isolates ofPaecilomyces marquandii from suppressive chinampa soils or P. lilacinus from Peru, fungi that parasitize nematode eggs, generally gave better control of tomato root-knot due toMeloidogyne incognita than did a single application. The effects on root galling by each of thePaecilomyces isolates varied between experiments; however, the ovicidal potential of the three isolates did not differ significantly. Proteins specific for each of the isolates were demonstrated by SDS gel electrophoresis. The results indicate thatP. marquandii is one of the natural soil organisms that contribute to nematode suppression in the chinampa agricultural soils.

  4. Root - knot nematodes on summer vegetables in North Tunisia

    Directory of Open Access Journals (Sweden)

    Moens, M.

    1985-01-01

    Full Text Available The influence of different factors on the root-knot nematode infestation and on the yield of tomato have been examined : date of planting, cultivar choice, rotation scheme and soil disinfestation. It was found that the earliest planting date gave the highest yield but also the most severe root galling on susceptible tomato cultivars. A cropping sequence where wheat is alternated with tomatoes was not sufficient for reducing root-knot nematode population to a level permitting the cropping of a susceptible tomato cultivar. Long rotations with non host crops should be used. Soil treatment with certain nematicides significantly reduced the root galling and improved the yield.

  5. Statistical and Economic Techniques for Site-specific Nematode Management.

    Science.gov (United States)

    Liu, Zheng; Griffin, Terry; Kirkpatrick, Terrence L

    2014-03-01

    Recent advances in precision agriculture technologies and spatial statistics allow realistic, site-specific estimation of nematode damage to field crops and provide a platform for the site-specific delivery of nematicides within individual fields. This paper reviews the spatial statistical techniques that model correlations among neighboring observations and develop a spatial economic analysis to determine the potential of site-specific nematicide application. The spatial econometric methodology applied in the context of site-specific crop yield response contributes to closing the gap between data analysis and realistic site-specific nematicide recommendations and helps to provide a practical method of site-specifically controlling nematodes.

  6. ORGANIC VS CONVENTIONAL: SOIL NEMATODE COMMUNITY STRUCTURE AND FUNCTION.

    Science.gov (United States)

    Kapp, C; Storey, S G; Malan, A P

    2014-01-01

    Global increases in human population are creating an ever-greater need for food production. Poor soil management practices have degraded soil to such an extent that rapidly improved management practices is the only way to ensure future food demands. In South Africa, deciduous fruit producers are realising the need for soil health, and for an increased understanding of the benefits of soil ecology, to ensure sustainable fruit production. This depends heavily on improved orchard management. Conventional farming relies on the addition of artificial fertilizers, and the application of chemicals, to prevent or minimise, the effects of the soil stages of pest insects, and of plant-parasitic nematodes. Currently, there is resistance toward conventional farming practices, which, it is believed, diminishes biodiversity within the soil. The study aimed to establish the soil nematode community structure and function in organically, and conventionally, managed deciduous fruit orchards. This was done by determining the abundance, the diversity, and the functionality of the naturally occurring free-living, and plant-parasitic, nematodes in deciduous fruit orchards in the Western Cape province of South Africa. The objective of the study was to form the basis for the use of nematodes as future indicators of soil health in deciduous fruit orchards. Orchards from neighbouring organic, and conventional, apricot farms, and from an organic apple orchard, were studied. All the nematodes were quantified, and identified, to family level. The five nematode-classified trophic groups were found at each site, while 14 families were identified in each orchard, respectively. Herbivores were dominant in all the orchards surveyed. Organic apples had the fewest herbivores and fungivores, with the highest number of carnivores. When comparing organic with conventional apricot orchards, higher numbers of plant-parasitic nematodes were found in the organic apricot orchards. The Maturity Index (MI

  7. KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)

    Science.gov (United States)

    Sales, Gabriele; Deagle, Bruce E.; Calura, Enrica; Martini, Paolo; Biscontin, Alberto; De Pittà, Cristiano; Kawaguchi, So; Romualdi, Chiara; Meyer, Bettina; Costa, Rodolfo; Jarman, Simon

    2017-01-01

    Antarctic krill (Euphausia superba) is a key species in the Southern Ocean with an estimated biomass between 100 and 500 million tonnes. Changes in krill population viability would have catastrophic effect on the Antarctic ecosystem. One looming threat due to elevated levels of anthropogenic atmospheric carbon dioxide (CO2) is ocean acidification (lowering of sea water pH by CO2 dissolving into the oceans). The genetics of Antarctic krill has long been of scientific interest for both for the analysis of population structure and analysis of functional genetics. However, the genetic resources available for the species are relatively modest. We have developed the most advanced genetic database on Euphausia superba, KrillDB, which includes comprehensive data sets of former and present transcriptome projects. In particular, we have built a de novo transcriptome assembly using more than 360 million Illumina sequence reads generated from larval krill including individuals subjected to different CO2 levels. The database gives access to: 1) the full list of assembled genes and transcripts; 2) their level of similarity to transcripts and proteins from other species; 3) the predicted protein domains contained within each transcript; 4) their predicted GO terms; 5) the level of expression of each transcript in the different larval stages and CO2 treatments. All references to external entities (sequences, domains, GO terms) are equipped with a link to the appropriate source database. Moreover, the software implements a full-text search engine that makes it possible to submit free-form queries. KrillDB represents the first large-scale attempt at classifying and annotating the full krill transcriptome. For this reason, we believe it will constitute a cornerstone of future approaches devoted to physiological and molecular study of this key species in the Southern Ocean food web. PMID:28187156

  8. Transcriptome Sequencing Analysis and Functional Identification of Sex Differentiation Genes from the Mosquito Parasitic Nematode, Romanomermis wuchangensis.

    Science.gov (United States)

    Duan, Mingyue; Xiong, Jinfeng; Lu, Dandan; Wang, Guoxiu; Ai, Hui

    Mosquito-transmitted diseases like malaria and dengue fever are global problem and an estimated 50-100 million of dengue or dengue hemorrhagic fever cases are reported worldwide every year. The mermithid nematode Romanomermis wuchangensis has been successfully used as an ecosystem-friendly biocontrol agent for mosquito prevention in laboratory studies. However, this nematode can not undergo sex differentiation in vitro culture, which has seriously affected their application of biocontrol in the field. In this study, based on transcriptome sequencing analysis of R. wuchangensis, Rwucmab-3, Rwuclaf-1 and Rwuctra-2 were cloned and used to investigate molecular regulatory function of sex differentiation. qRT-PCR results demonstrated that the expression level of Rwucmab-3 between male and female displayed obvious difference on the 3rd day of parasitic stage, which was earlier than Rwuclaf-1 and Rwuctra-2, highlighting sex differentiation process may start on the 3rd day of parasitic stage. Besides, FITC was used as a marker to test dsRNA uptake efficiency of R. wuchangensis, which fluorescence intensity increased with FITC concentration after 16 h incubation, indicating this nematode can successfully ingest soaking solution via its cuticle. RNAi results revealed the sex ratio of R. wuchangensis from RNAi treated groups soaked in dsRNA of Rwucmab-3 was significantly higher than gfp dsRNA treated groups and control groups, highlighting RNAi of Rwumab-3 may hinder the development of male nematodes. These results suggest that Rwucmab-3 mainly involves in the initiation of sex differentiation and the development of male sexual dimorphism. Rwuclaf-1 and Rwuctra-2 may play vital role in nematode reproductive and developmental system. In conclusion, transcript sequences presented in this study could provide more bioinformatics resources for future studies on gene cloning and other molecular regulatory mechanism in R. wuchangensis. Moreover, identification and functional

  9. Transcriptome Sequencing Analysis and Functional Identification of Sex Differentiation Genes from the Mosquito Parasitic Nematode, Romanomermis wuchangensis

    Science.gov (United States)

    Duan, Mingyue; Xiong, Jinfeng; Lu, Dandan; Wang, Guoxiu; Ai, Hui

    2016-01-01

    Mosquito-transmitted diseases like malaria and dengue fever are global problem and an estimated 50–100 million of dengue or dengue hemorrhagic fever cases are reported worldwide every year. The mermithid nematode Romanomermis wuchangensis has been successfully used as an ecosystem-friendly biocontrol agent for mosquito prevention in laboratory studies. However, this nematode can not undergo sex differentiation in vitro culture, which has seriously affected their application of biocontrol in the field. In this study, based on transcriptome sequencing analysis of R. wuchangensis, Rwucmab-3, Rwuclaf-1 and Rwuctra-2 were cloned and used to investigate molecular regulatory function of sex differentiation. qRT-PCR results demonstrated that the expression level of Rwucmab-3 between male and female displayed obvious difference on the 3rd day of parasitic stage, which was earlier than Rwuclaf-1 and Rwuctra-2, highlighting sex differentiation process may start on the 3rd day of parasitic stage. Besides, FITC was used as a marker to test dsRNA uptake efficiency of R. wuchangensis, which fluorescence intensity increased with FITC concentration after 16 h incubation, indicating this nematode can successfully ingest soaking solution via its cuticle. RNAi results revealed the sex ratio of R. wuchangensis from RNAi treated groups soaked in dsRNA of Rwucmab-3 was significantly higher than gfp dsRNA treated groups and control groups, highlighting RNAi of Rwumab-3 may hinder the development of male nematodes. These results suggest that Rwucmab-3 mainly involves in the initiation of sex differentiation and the development of male sexual dimorphism. Rwuclaf-1 and Rwuctra-2 may play vital role in nematode reproductive and developmental system. In conclusion, transcript sequences presented in this study could provide more bioinformatics resources for future studies on gene cloning and other molecular regulatory mechanism in R. wuchangensis. Moreover, identification and functional

  10. Interhemispheric coupling, the West Antarctic Ice Sheet and warm Antarctic interglacials

    Directory of Open Access Journals (Sweden)

    P. B. Holden

    2010-07-01

    Full Text Available Ice core evidence indicates that even though atmospheric CO2 concentrations did not exceed ~300 ppm at any point during the last 800 000 years, East Antarctica was at least ~3–4 °C warmer than preindustrial (CO2~280 ppm in each of the last four interglacials. During the previous three interglacials, this anomalous warming was short lived (~3000 years and apparently occurred before the completion of Northern Hemisphere deglaciation. Hereafter, we refer to these periods as "Warmer than Present Transients" (WPTs. We present a series of experiments to investigate the impact of deglacial meltwater on the Atlantic Meridional Overturning Circulation (AMOC and Antarctic temperature. It is well known that a slowed AMOC would increase southern sea surface temperature (SST through the bipolar seesaw and observational data suggests that the AMOC remained weak throughout the terminations preceding WPTs, strengthening rapidly at a time which coincides closely with peak Antarctic temperature. We present two 800 kyr transient simulations using the Intermediate Complexity model GENIE-1 which demonstrate that meltwater forcing generates transient southern warming that is consistent with the timing of WPTs, but is not sufficient (in this single parameterisation to reproduce the magnitude of observed warmth. In order to investigate model and boundary condition uncertainty, we present three ensembles of transient GENIE-1 simulations across Termination II (135 000 to 124 000 BP and three snapshot HadCM3 simulations at 130 000 BP. Only with consideration of the possible feedback of West Antarctic Ice Sheet (WAIS retreat does it become possible to simulate the magnitude of observed warming.

  11. A Simple Method to Measure Nematodes' Propulsive Thrust and the Nematode Ratchet.

    Science.gov (United States)

    Bau, Haim; Yuan, Jinzhou; Raizen, David

    2015-11-01

    Since the propulsive thrust of micro organisms provides a more sensitive indicator of the animal's health and response to drugs than motility, a simple, high throughput, direct measurement of the thrust is desired. Taking advantage of the nematode C. elegans being heavier than water, we devised a simple method to determine the propulsive thrust of the animals by monitoring their velocity when swimming along an inclined plane. We find that the swimming velocity is a linear function of the sin of the inclination angle. This method allows us to determine, among other things, the animas' propulsive thrust as a function of genotype, drugs, and age. Furthermore, taking advantage of the animals' inability to swim over a stiff incline, we constructed a sawteeth ratchet-like track that restricts the animals to swim in a predetermined direction. This research was supported, in part, by NIH NIA Grant 5R03AG042690-02.

  12. Pteropods and climate off the Antarctic Peninsula

    Science.gov (United States)

    Loeb, Valerie J.; Santora, Jarrod A.

    2013-09-01

    Shelled (thecosome) and naked (gymnosome) pteropods are regular, at times abundant, members of Southern Ocean zooplankton assemblages. Regionally, shelled species can play a major role in food webs and carbon cycling. Because of their aragonite shells thecosome pteropods may be vulnerable to the impacts of ocean acidification; without shells they cannot survive and their demise would have major implications for food webs and carbon cycling in the Southern Ocean. Additionally, pteropod species in the southwest Atlantic sector of the Southern Ocean inhabit a region of rapid warming and climate change, the impacts of which are predicted to be observed as poleward distribution shifts. Here we provide baseline information on intraseasonal, interannual and longer scale variability of pteropod populations off the Antarctic Peninsula between 1994 and 2009. Concentrations of the 4 dominant taxa, Limacina helicina antarctica f. antarctica, Clio pyramidata f. sulcata, Spongiobranchaea australis and Clione limacina antarctica, are similar to those monitored during the 1928-1935 Discovery Investigations and reflect generally low values but with episodic interannual abundance peaks that, except for C. pyr. sulcata, are related to basin-scale climate forcing associated with the El Niño-Southern Oscillation (ENSO) climate mode. Significant abundance increases of L. helicina and S. australis after 1998 were associated with a climate regime shift that initiated a period dominated by cool La Niña conditions and increased nearshore influence of the Antarctic Circumpolar Current (ACC). This background information is essential to assess potential future changes in pteropod species distribution and abundance associated with ocean warming and acidification. construct maps of pteropod spatial frequency and mean abundance to assess their oceanographic associations; quantify pteropod abundance anomalies for comparing intraseasonal and interannual variability relative to m-3 environmental

  13. Antarctic Single Frames = Frame Level Records of Antarctica Photos: 1946 - 2000

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Aerial photographs of Antarctica from the United States Antarctic Resource Center (USARC) and the British Antarctic Survey (BAS) are maintained in this collection....

  14. Stem nematode counteracts plant resistance of aphids in alfalfa, Medicago sativa.

    Science.gov (United States)

    Ramirez, Ricardo A; Spears, Lori R

    2014-10-01

    Plants are exploited by a diverse community of insect herbivores and phytopathogens that interact indirectly through plant-mediated interactions. Generally, plants are thought to respond to insects and pathogens through different defensive signaling pathways. As plants are selected for resistance to one phytophagous organism type (insect vs. pathogen) in managed systems, it is not clear how this selection may affect community interactions. This study examined the effect of nematode-resistant varieties on aphid (Acyrthosiphon pisum) suppression, and then determined how infection by the stem nematode, Ditylenchus dipsaci, mediated ecological effects on aphids and on plant defense proteins. Four alfalfa (Medicago sativa) varieties were selected with resistance to nematodes only (+,-), aphids only (-,+), nematodes and aphids (+,+), and susceptibility to nematodes and aphids (-,-). Field and greenhouse experiments were conducted to isolate the effect of nematode infection and aphid abundance on each variety. We found that varieties resistant to nematode, regardless of aphid resistance, had the lowest aphid counts, suggesting possible cross-resistance. Aphid abundance, however, increased when plants were exposed to nematodes. Resistant varieties were associated with elevated saponins but these compounds were not affected by insect or pathogen feeding. Concentrations of peroxidases and trypsin inhibitors, however, were increased in nematode resistant varieties when exposed to nematodes and aphids, respectively. The patterns of plant defense were variable, and a combination of resistance traits and changes in nutrient availability may drive positive interactions between nematodes and aphids aboveground.

  15. The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes.

    Science.gov (United States)

    Zheng, Jinshui; Peng, Donghai; Chen, Ling; Liu, Hualin; Chen, Feng; Xu, Mengci; Ju, Shouyong; Ruan, Lifang; Sun, Ming

    2016-07-27

    Plant-parasitic nematodes were found in 4 of the 12 clades of phylum Nematoda. These nematodes in different clades may have originated independently from their free-living fungivorous ancestors. However, the exact evolutionary process of these parasites is unclear. Here, we sequenced the genome sequence of a migratory plant nematode, Ditylenchus destructor We performed comparative genomics among the free-living nematode, Caenorhabditis elegans and all the plant nematodes with genome sequences available. We found that, compared with C. elegans, the core developmental control processes underwent heavy reduction, though most signal transduction pathways were conserved. We also found D. destructor contained more homologies of the key genes in the above processes than the other plant nematodes. We suggest that Ditylenchus spp. may be an intermediate evolutionary history stage from free-living nematodes that feed on fungi to obligate plant-parasitic nematodes. Based on the facts that D. destructor can feed on fungi and has a relatively short life cycle, and that it has similar features to both C. elegans and sedentary plant-parasitic nematodes from clade 12, we propose it as a new model to study the biology, biocontrol of plant nematodes and the interaction between nematodes and plants.

  16. Breeding Soybeans for Resistance to Physiological Race 4 of Cyst Nematode

    Institute of Scientific and Technical Information of China (English)

    WANG Lian-zheng; WANG Lan; YAN Qing-shang; ZHAO Rong-juan; CHEN Pin-san; LI Qiang

    2002-01-01

    Soybean cyst nematode causes serious damage to soybean production. In 1991, we started breeding studies on the resistance of soybeans to the cyst nematode. We found that near the Beijing area the dominant race of the cyst nematode was race 4. We made more than 50 combinations of cross. The best combination was Dan 8 × PI 437654 which resulted in marked segregation in plant height, pod habit, resistance to cyst nematode and maturity. We obtained many new soybean lines highly resistant to the cyst nematode through the pedigree method of selection, enlarging the number of plants of good combinations, alternative breeding in the North and in the South, and identification at an early generation. We now have released three soybean cultivars, Zhonghuang 12, Zhonghuang 13 and Zhonghuang 17 with moderate resistance to the cyst nematode in Beijing, Anhui, Tianjin and Northern China. In addition, we obtained many lines which were highly resistant to the cyst nematode.

  17. Complex Geodetic Research in Ukrainian Antarctic Station "Academician Vernadsky" (Years 2002 - 2005, 2013-2014)

    Science.gov (United States)

    Tretyak, Kornyliy; Hlotov, Volodymyr; Holubinka, Yuriy; Marusazh, Khrystyna

    2016-06-01

    In this paper is given an information about complex geodetic research in Ukrainian Antarctic station "Academician Vernadsky". Research were carried by Lviv polytechnic scientists, during Antarctic expeditions in years 2002 - 2005, 2013, 2014. Main objectives of the studies were: (a) study of the islands glaciers surface volumes changes in Antarctic archipelago and Antarctic Peninsula using terestrial laser scaning and digital terrestrial stereophotogrammetry survey; (b) investigation of Penola strain tectonic fault, using the results of precise GNSS observations.

  18. Choanoflagellates in the Antarctic Ocean, with special reference to Parvicorbicula socialis (Meunier) Deflandre

    OpenAIRE

    Hara,Shigemitsu/Tanoue,Eiichiro/Zenimoto,Michio/Komaki,Yuzo/Takahashi,Eiji

    1984-01-01

    Distribution and morphology of choanoflagellates, collared heterotrophic flagellates bearing an extracellular siliceous lorica, were reviewed. Eleven species were reported from the Antarctic Ocean. Three of the eleven species were originally described from the Antarctic and are known to be endemic to the Antarctic. The other eight were found in various oceanic areas. Choanoflagellates had been found in both ice and water, which suggested their wide and abundant distribution in the Antarctic. ...

  19. Skip spawning as a reproductive strategy in Antarctic fish species: the Antarctic silverfish (Pleuragramma antarctica case study

    Directory of Open Access Journals (Sweden)

    Eva Pisano

    2015-11-01

    Full Text Available The Antarctic silverfish Pleuragramma antarctica (Notothenioidei, Nototheniidae is the most abundant pelagic fish inhabiting the frigid Antarctic coastal waters. It plays relevant roles in the local ecosystems, where it is often considered a keystone species connecting lower and upper trophic levels within the coastal marine food web. Despite its ecological relevance, and although many aspects of the Antarctic silverfish biology have already been elucidated, knowledge on important components of its life cycle, including the reproductive features, is still poor. The available data on the reproduction of the Antarctic silverfish remains fragmentary and, in particular, information on the silverfish from the Ross Sea is lacking, in spite of the intensive ecological studies on this unique region and the fact that the only known nursery ground for this species is located in Terra Nova Bay (Ross Sea where hatching occurs under the sea-ice. We present the here first description of the reproductive features of Antarctic silverfish from fish sampled in late Summer (mid February 2008 in the Ross Sea. The gross reproductive traits are consistent with those reported from other Antarctic sectors but, interestingly, widespread follicular atresia has been detected in the fish examined. The intensity and prevalence of such a follicular degenerative process suggest that skip spawning (not all adults spawn every year could be a reproductive strategy of this Antarctic species. Such an hypothesis is discussed both on the short-term and on the evolutionary time-scale. Overall, the data presented also contribute to support the acknowledgment that skip-spawning is a diffuse phenomenon in fishes.

  20. Antarctic Yeasts: Biodiversity and Potential Applications

    Science.gov (United States)

    Shivaji, S.; Prasad, G. S.

    This review is an attempt in cataloguing the diversity of yeasts in Antarctica, highlight their biotechnological potential and understand the basis of adaptation to low temperature. As of now several psychrophilic and psychrotolerant yeasts from Antarctic soils and marine waters have been characterized with respect to their growth characteristics, ecological distribution and taxonomic significance. Interestingly most of these species belonged to basidiomycetous yeasts which as a group are known for their ability to circumvent and survive under stress conditions. Simultaneously their possible role as work horses in the biotechnological industry was recognized due to their ability to produce novel enzymes and biomolecules such as agents for the breakdown of xenobiotics, and novel pharmaceutical chemi cals. The high activity of psychrophilic enzymes at low and moderate temperatures offers potential economic benefits. As of now lipases from Pseudozyma antarctica have been extensively studied to understand their unique thermal stability at 90°C and also because of its use in the pharmaceutical, agriculture, food, cosmetics and chemical industry. A few of the other enzymes which have been studied include extracellular alpha-amylase and glucoamylase from the yeast Pseudozyma antarctica (Candida antarctica), an extra-cellular protease from Cryptococcus humicola, an aspartyl proteinase from Cryptococcus humicola, a novel extracellular subtilase from Leucosporidium antarcticum, and a xylanase from Cryptococcus adeliensis

  1. Biogeography of circum-Antarctic springtails.

    Science.gov (United States)

    McGaughran, Angela; Stevens, Mark I; Holland, Barbara R

    2010-10-01

    We examine the effects of isolation over both ancient and contemporary timescales on evolutionary diversification and speciation patterns of springtail species in circum-Antarctica, with special focus on members of the genus Cryptopygus (Collembola, Isotomidae). We employ phylogenetic analysis of mitochondrial DNA (cox1), and ribosomal DNA (18S and 28S) genes in the programmes MrBayes and RAxML. Our aims are twofold: (1) we evaluate existing taxonomy in light of previous work which found dubious taxonomic classification in several taxa based on cox1 analysis; (2) we evaluate the biogeographic origin of our chosen suite of springtail species based on dispersal/vicariance scenarios, the magnitude of genetic divergence among lineages and the age and accessibility of potential habitat. The dubious taxonomic characterisation of Cryptopygus species highlighted previously is confirmed by our multi-gene phylogenetic analyses. Specifically, according to the current taxonomy, Cryptopygus antarcticus subspecies are not completely monophyletic and neither are Cryptopygus species in general. We show that distribution patterns among species/lineages are both dispersal- and vicariance-driven. Episodes of colonisation appear to have occurred frequently, the routes of which may have followed currents in the Southern Ocean. In several cases, the estimated divergence dates among species correspond well with the timing of terrestrial habitat availability. We conclude that these isotomid springtails have a varied and diverse evolutionary history in the circum-Antarctic that consists of both ancient and recent elements and is reflected in a dynamic contemporary fauna.

  2. Quantification of ikaite in Antarctic sea ice

    Directory of Open Access Journals (Sweden)

    M. Fischer

    2012-02-01

    Full Text Available Calcium carbonate precipitation in sea ice can increase pCO2 during precipitation in winter and decrease pCO2 during dissolution in spring. CaCO3 precipitation in sea ice is thought to potentially drive significant CO2 uptake by the ocean. However, little is known about the quantitative spatial and temporal distribution of CaCO3 within sea ice. This is the first quantitative study of hydrous calcium carbonate, as ikaite, in sea ice and discusses its potential significance for the carbon cycle in polar oceans. Ice cores and brine samples were collected from pack and land fast sea ice between September and December 2007 during an expedition in the East Antarctic and another off Terre Adélie, Antarctica. Samples were analysed for CaCO3, Salinity, DOC, DON, Phosphate, and total alkalinity. A relationship between the measured parameters and CaCO3 precipitation could not be observed. We found calcium carbonate, as ikaite, mostly in the top layer of sea ice with values up to 126 mg ikaite per liter melted sea ice. This potentially represents a contribution between 0.12 and 9 Tg C to the annual carbon flux in polar oceans. The horizontal distribution of ikaite in sea ice was heterogenous. We also found the precipitate in the snow on top of the sea ice.

  3. Ionospheric irregularities at Antarctic using GPS measurements

    Indian Academy of Sciences (India)

    Sunita Tiwari; Amit Jain; Shivalika Sarkar; Sudhir Jain; A K Gwal

    2012-04-01

    The purpose of this work is to study the behaviour of the ionospheric scintillation at high latitude during geomagnetically quiet and disturbed conditions which is one of the most relevant themes in the space weather studies. Scintillation is a major problem in navigation application using GPS and in satellite communication at high latitudes. Severe amplitude fading and strong scintillation affect the reliability of GPS navigational system and satellite communication. To study the effects of the ionospheric scintillations, GPS receiver installed at Antarctic station Maitri (Geog. 70.76°S; 11.74°E) was used. The data is collected by using GISTM 4004A, NOVATEL’S GPS receiver during March 2008. Studies show that percentage occurrence of phase scintillation is well correlated with geomagnetic activity during the observation period. The result also shows that very intense scintillations can degrade GPS based location determination due to loss of lock of satellites. These findings indicate that the dependence of scintillations and irregularity occurrence on geomagnetic activity is associated with the magnetic local time (MLT). Large number of patches are reported and their activity depends on the magnetic activity index.

  4. 单条线虫DNA提取方法%Method of extract DNA from a single nematode

    Institute of Scientific and Technical Information of China (English)

    王江岭; 张建成; 顾建锋

    2011-01-01

    added solutes. (2) All the process is finished in one PCR tube, no liquid transported and less solutes added. So the pollution and bad effect to the later PCR process are greatly reduced. (3) Manual disruption of nematode is replaced by poikilothermic treatment; pollution is avoided and no experiment technique is required. Compared with two other proteinase K methods of nematode DNA extraction, this method was proved effective and stabile, and could be used in rapid test; nematode proteins were dissolved completely and more DNA released, the PCR result is good even when the extracted DNA were diluted for 32 time, which procides more molecular experiments chances.

  5. Evidence for warmer interglacials in East Antarctic ice cores.

    Science.gov (United States)

    Sime, L C; Wolff, E W; Oliver, K I C; Tindall, J C

    2009-11-19

    Stable isotope ratios of oxygen and hydrogen in the Antarctic ice core record have revolutionized our understanding of Pleistocene climate variations and have allowed reconstructions of Antarctic temperature over the past 800,000 years (800 kyr; refs 1, 2). The relationship between the D/H ratio of mean annual precipitation and mean annual surface air temperature is said to be uniform +/-10% over East Antarctica and constant with time +/-20% (refs 3-5). In the absence of strong independent temperature proxy evidence allowing us to calibrate individual ice cores, prior general circulation model (GCM) studies have supported the assumption of constant uniform conversion for climates cooler than that of the present day. Here we analyse the three available 340 kyr East Antarctic ice core records alongside input from GCM modelling. We show that for warmer interglacial periods the relationship between temperature and the isotopic signature varies among ice core sites, and that therefore the conversions must be nonlinear for at least some sites. Model results indicate that the isotopic composition of East Antarctic ice is less sensitive to temperature changes during warmer climates. We conclude that previous temperature estimates from interglacial climates are likely to be too low. The available evidence is consistent with a peak Antarctic interglacial temperature that was at least 6 K higher than that of the present day -approximately double the widely quoted 3 +/- 1.5 K (refs 5, 6).

  6. Levoglucosan and phenols in Antarctic marine, coastal and plateau aerosols.

    Science.gov (United States)

    Zangrando, Roberta; Barbaro, Elena; Vecchiato, Marco; Kehrwald, Natalie M; Barbante, Carlo; Gambaro, Andrea

    2016-02-15

    Due to its isolated location, Antarctica is a natural laboratory for studying atmospheric aerosols and pollution in remote areas. Here, we determined levoglucosan and phenolic compounds (PCs) at diverse Antarctic sites: on the plateau, a coastal station and during an oceanographic cruise. Levoglucosan and PCs reached the Antarctic plateau where they were observed in accumulation mode aerosols (with median levoglucosan concentrations of 6.4 pg m(-3) and 4.1 pg m(-3), and median PC concentrations of 15.0 pg m(-3) and 7.3 pg m(-3)). Aged aerosols arrived at the coastal site through katabatic circulation with the majority of the levoglucosan mass distributed on larger particulates (24.8 pg m(-3)), while PCs were present in fine particles (34.0 pg m(-3)). The low levoglucosan/PC ratios in Antarctic aerosols suggest that biomass burning aerosols only had regional, rather than local, sources. General acid/aldehyde ratios were lower at the coastal site than on the plateau. Levoglucosan and PCs determined during the oceanographic cruise were 37.6 pg m(-3) and 58.5 pg m(-3) respectively. Unlike levoglucosan, which can only be produced by biomass burning, PCs have both biomass burning and other sources. Our comparisons of these two types of compounds across a range of Antarctic marine, coastal, and plateau sites demonstrate that local marine sources dominate Antarctic PC concentrations.

  7. Identification of tropomyosins as major allergens in antarctic krill and mantis shrimp and their amino acid sequence characteristics.

    Science.gov (United States)

    Motoyama, Kanna; Suma, Yota; Ishizaki, Shoichiro; Nagashima, Yuji; Lu, Ying; Ushio, Hideki; Shiomi, Kazuo

    2008-01-01

    Tropomyosin represents a major allergen of decapod crustaceans such as shrimps and crabs, and its highly conserved amino acid sequence (>90% identity) is a molecular basis of the immunoglobulin E (IgE) cross-reactivity among decapods. At present, however, little information is available about allergens in edible crustaceans other than decapods. In this study, the major allergen in two species of edible crustaceans, Antarctic krill Euphausia superba and mantis shrimp Oratosquilla oratoria that are taxonomically distinct from decapods, was demonstrated to be tropomyosin by IgE-immunoblotting using patient sera. The cross-reactivity of the tropomyosins from both species with decapod tropomyosins was also confirmed by inhibition IgE immunoblotting. Sequences of the tropomyosins from both species were determined by complementary deoxyribonucleic acid cloning. The mantis shrimp tropomyosin has high sequence identity (>90% identity) with decapod tropomyosins, especially with fast-type tropomyosins. On the other hand, the Antarctic krill tropomyosin is characterized by diverse alterations in region 13-42, the amino acid sequence of which is highly conserved for decapod tropomyosins, and hence, it shares somewhat lower sequence identity (82.4-89.8% identity) with decapod tropomyosins than the mantis shrimp tropomyosin. Quantification by enzyme-linked immunosorbent assay revealed that Antarctic krill contains tropomyosin at almost the same level as decapods, suggesting that its allergenicity is equivalent to decapods. However, mantis shrimp was assumed to be substantially not allergenic because of the extremely low content of tropomyosin.

  8. A serological approach to the identification of potato cyst nematodes.

    NARCIS (Netherlands)

    Schots, A.

    1988-01-01

    The potato cyst nematode species G.rostochiensis and G.pallida are a threat to the cultivation of potatoes. Their presence in the soil embodies a potential financial loss to the farmer either because of harvest reduction, or because of rejection of seed potatoes, and othe

  9. Managing Plant-Parasitic Nematodes in Established Red Raspberry Fields

    Science.gov (United States)

    The efficacy and phytotoxicity of post-plant treatments to control root lesion [Pratylenchus penetrans (Cobb), Chitwood & Otiefa] and dagger (Xiphinema bakeri Williams) nematodes in red raspberry (Rubus idaeus L.) were evaluated in four field studies conducted over three years. Spring spray applicat...

  10. Mechanisms Involved in Nematode Control by Endophytic Fungi

    NARCIS (Netherlands)

    Schouten, Sander

    2016-01-01

    Colonization of plants by particular endophytic fungi can provide plants with improved defenses toward nematodes. Evidently, such endophytes can be important in developing more sustainable agricultural practices. The mechanisms playing a role in this quantitative antagonism are poorly understood

  11. Grazing sericea lespedeza for control of gastrointestinal nematodes in lambs

    Science.gov (United States)

    Alternatives to chemical dewormers are needed to counter anthelmintic resistance and improve organic management systems. The objective was to examine the effectiveness of grazing sericea lespedeza (SL) compared with grass pastures for control of gastrointestinal nematodes (GIN) in lambs. In Experi...

  12. Dietary copper sulfate for control of gastrointestinal nematodes in goats

    Science.gov (United States)

    Prevalence of anthelmintic resistance in goats has necessitated studies for alternative means of gastrointestinal nematode (GIN) control. The objective was to determine the effectiveness of dietary copper sulfate for control of GIN in meat goats. Naturally infected buck kids received 0 (LC), 78 (M...

  13. Herbal dewormer fails to control gastrointestinal nematodes in goats

    Science.gov (United States)

    Gastrointestinal nematode (GIN) parasitism is the most important disease of small ruminants. Control is usually based on the use of chemical anthelmintics (dewormers); but these are prohibited from use in organic livestock, and the effectiveness of chemical anthelmintics in conventional operations ...

  14. Field study on nematode resistance in Nelore-breed cattle

    NARCIS (Netherlands)

    Bricarello, P A; Zaros, L G; Coutinho, L L; Rocha, R A; Kooyman, F N J; De Vries, E; Gonçalves, J R S; Lima, L G; Pires, A V; Amarante, A F T

    2007-01-01

    The present study evaluated Nelore cattle with different degrees of resistance to natural infections by gastrointestinal nematodes. One hundred weaned male cattle, 11-12 months of age, were kept on the same pasture and evaluated from October 2003 to February 2004. Faecal and blood samples were colle

  15. Garlic exhibits lack of control over gastrointestinal nematodes in goats

    Science.gov (United States)

    Gastrointestinal nematodes (GIN) continue to hinder small ruminant production because of anthelmintic resistance and lack of effective products for GIN control in organic production. The objective of this study was to examine the effectiveness of a commercially available certified organic garlic pr...

  16. Mitochondrial genome diversity in dagger and needle nematodes (Nematoda: Longidoridae)

    Science.gov (United States)

    Palomares-Rius, J. E.; Cantalapiedra-Navarrete, C.; Archidona-Yuste, A.; Blok, V. C.; Castillo, P.

    2017-01-01

    Dagger and needle nematodes included in the family Longidoridae (viz. Longidorus, Paralongidorus, and Xiphinema) are highly polyphagous plant-parasitic nematodes in wild and cultivated plants and some of them are plant-virus vectors (nepovirus). The mitochondrial (mt) genomes of the dagger and needle nematodes, Xiphinema rivesi, Xiphinema pachtaicum, Longidorus vineacola and Paralongidorus litoralis were sequenced in this study. The four circular mt genomes have an estimated size of 12.6, 12.5, 13.5 and 12.7 kb, respectively. Up to date, the mt genome of X. pachtaicum is the smallest genome found in Nematoda. The four mt genomes contain 12 protein-coding genes (viz. cox1-3, nad1-6, nad4L, atp6 and cob) and two ribosomal RNA genes (rrnL and rrnS), but the atp8 gene was not detected. These mt genomes showed a gene arrangement very different within the Longidoridae species sequenced, with the exception of very closely related species (X. americanum and X. rivesi). The sizes of non-coding regions in the Longidoridae nematodes were very small and were present in a few places in the mt genome. Phylogenetic analysis of all coding genes showed a closer relationship between Longidorus and Paralongidorus and different phylogenetic possibilities for the three Xiphinema species. PMID:28150734

  17. IN VITRO CULTURING OF THE PREDATORY SOIL NEMATODE CLARKUS PAPILLATUS

    Science.gov (United States)

    Clarkus papillatus is a widely distributed predatory soil nematode and is of interest in the study of soil ecology, yet very little information exists on its in vitro culturing. In this investigation, an artificial environment was created to maintain C. papillatus for multi-gener...

  18. 75 FR 54592 - Pale Cyst Nematode; Update of Quarantined Areas

    Science.gov (United States)

    2010-09-08

    ... INFORMATION: Background The pale cyst nematode (PCN, Globodera pallida) is a major pest of potato crops in... some weeds. The PCN is thought to have originated in Peru and is now widely distributed in many potato-growing regions of the world. PCN infestations may be expressed as patches of poor growth. Affected...

  19. Putatively novel sources of resistance to soybean cyst nematode

    Science.gov (United States)

    Soybean cyst nematode (SCN) remains to be the most economically devastating endo-root parasite of soybean [Glycine max L. (Merrill)], in the USA and worldwide. Currently, two resistance loci, rhg1 and Rhg4 have been the main sources of resistance to SCN. Over 95% of soybean cultivars with SCN resist...

  20. Transposon associated markers for the parasitic nematode Haemonchus contortus

    NARCIS (Netherlands)

    Hoekstra, R.; Otsen, M.; Tibben, J.; Lenstra, J.A.; Roos, M.H.

    2000-01-01

    We have previously characterized a Tc1-like transposable element Hctc1, from the parasitic nematode Haemonchus contortus. Here we describe the genetic variation of Hctc1 insertion sites in H. contortus populations differing in geographical origin, resistance to chemotherapeutics and level of inbreed

  1. Anthelmintic effects of forage chicory against parasitic nematodes in cattle

    DEFF Research Database (Denmark)

    Pena-Espinoza, Miguel Angel; Williams, Andrew; Thamsborg, Stig Milan;

    BACKGROUND: Chicory (Cichorium intybus) has potential as a natural anthelmintic in livestock, however evidence of efficacy against cattle nematodes is lacking. Here, we investigated anthelmintic effects of chicory in stabled calves. METHODS: Jersey male calves (2-4 months) were stratified by live...

  2. Maintenance of genetic variation in automictic root-knot nematodes

    NARCIS (Netherlands)

    Van Der Beek, J. G. ( Hans); Punacker, Laas P.

    2008-01-01

    Differences in amplified fragment length polymorphisms (AFLP) between isolates and between mono-female lines of facultative automictic Meloidogyne hapla race A and obligate apomictic M incognita were determined to test the hypothesis that inverted meiosis occurs. DNA of the parthenogenetic nematode

  3. IMMUNE REGULATING ES-PRODUCTS IN PARASITIC NEMATODES

    DEFF Research Database (Denmark)

    Bahlool, Qusay Zuhair Mohammad; Buchmann, Kurt; Kania, Per Walter;

    arylamidases, naphthol-AS-BI-phosphohydrolase and a-galactosidase activities were present in the ES solution. This type of hydrolytic enzyme activity may play a role in nematode penetration of host tissue. Based on the notion that A. simplex ES-proteins may have an immune-depressive effect, it could also...

  4. IMMUNE REGULATING ES-PRODUCTS IN PARASITIC NEMATODES

    DEFF Research Database (Denmark)

    Bahlool, Qusay Zuhair Mohammad; Buchmann, Kurt; Kania, Per Walter;

    Excretory/secretory (ES) products are molecules including various proteins produced by parasitic nematodes including larval A. simplex which is occurring in numerous marine fish hosts. The function of these substances and their effect on host physiology has not been fully described. The present...

  5. 75 FR 11111 - Pale Cyst Nematode; Update of Quarantined Areas

    Science.gov (United States)

    2010-03-10

    ... Animal and Plant Health Inspection Service Pale Cyst Nematode; Update of Quarantined Areas AGENCY: Animal and Plant Health Inspection Service, USDA. ACTION: Notice of changes to quarantined area. SUMMARY: We are advising the public that we have made changes to the area in the State of Idaho that...

  6. 77 FR 22185 - Golden Nematode; Removal of Regulated Areas

    Science.gov (United States)

    2012-04-13

    ... Inspection Service 7 CFR Part 301 Golden Nematode; Removal of Regulated Areas AGENCY: Animal and Plant Health... townships of Elba and Byron in Genesee County, NY, from the list of generally infested areas. Surveys have... regulation of these areas was no longer necessary. As a result of that action, all the areas in...

  7. Nematode Infections Are Risk Factors for Staphylococcal Infection in Children

    Directory of Open Access Journals (Sweden)

    Sandra F Moreira-Silva

    2002-04-01

    Full Text Available Nematode infection may be a risk factor for pyogenic liver abscess in children and we hypothesized that the immunomodulation induced by those parasites would be a risk factor for any staphylococcal infection in children. The present study was designed to compare, within the same hospital, the frequency of intestinal nematodes and Toxocara infection in children with and without staphylococcal infections. From October 1997 to February 1998, 80 children with staphylococcal infection and 110 children with other diseases were submitted to fecal examination, serology for Toxocara sp., evaluation of plasma immunoglobulin levels, and eosinophil counts. Mean age, gender distribution, birthplace, and socioeconomic conditions did not differ significantly between the two groups. Frequency of intestinal nematodes and positive serology for Toxocara, were remarkably higher in children with staphylococcal infections than in the non-staphylococcal group. There was a significant correlation between intestinal nematodes or Toxocara infection and staphylococcal infection in children, reinforced by higher eosinophil counts and higher IgE levels in these children than in the control group. One possible explanation for this association would be the enhancement of bacterial infection by the immunomodulation induced by helminth infections, due to strong activation of the Th2 subset of lymphocytes by antigens from larvae and adult worms.

  8. Profiling nematode communities in unmanaged flowerbed and agricultural field soils in Japan by DNA barcode sequencing.

    Directory of Open Access Journals (Sweden)

    Hisashi Morise

    Full Text Available Soil nematodes play crucial roles in the soil food web and are a suitable indicator for assessing soil environments and ecosystems. Previous nematode community analyses based on nematode morphology classification have been shown to be useful for assessing various soil environments. Here we have conducted DNA barcode analysis for soil nematode community analyses in Japanese soils. We isolated nematodes from two different environmental soils of an unmanaged flowerbed and an agricultural field using the improved flotation-sieving method. Small subunit (SSU rDNA fragments were directly amplified from each of 68 (flowerbed samples and 48 (field samples isolated nematodes to determine the nucleotide sequence. Sixteen and thirteen operational taxonomic units (OTUs were obtained by multiple sequence alignment from the flowerbed and agricultural field nematodes, respectively. All 29 SSU rDNA-derived OTUs (rOTUs were further mapped onto a phylogenetic tree with 107 known nematode species. Interestingly, the two nematode communities examined were clearly distinct from each other in terms of trophic groups: Animal predators and plant feeders were markedly abundant in the flowerbed soils, in contrast, bacterial feeders were dominantly observed in the agricultural field soils. The data from the flowerbed nematodes suggests a possible food web among two different trophic nematode groups and plants (weeds in the closed soil environment. Finally, DNA sequences derived from the mitochondrial cytochrome oxidase c subunit 1 (COI gene were determined as a DNA barcode from 43 agricultural field soil nematodes. These nematodes were assigned to 13 rDNA-derived OTUs, but in the COI gene analysis were assigned to 23 COI gene-derived OTUs (cOTUs, indicating that COI gene-based barcoding may provide higher taxonomic resolution than conventional SSU rDNA-barcoding in soil nematode community analysis.

  9. Protection of Antarctic microbial communities – ‘out of sight, out of mind’

    Directory of Open Access Journals (Sweden)

    Kevin Andrew Hughes

    2015-02-01

    Full Text Available Recent advances in molecular biology techniques have shown the presence of diverse microbial communities and endemic species in Antarctica. Endemic microbes may be a potential source of novel biotechnologically important compounds, including, for example, new antibiotics. Thus, the scientific and biotechnological value of Antarctic terrestrial microbial habitats can be compromised by human visitation to a greater extent than previously realized. The ever-increasing human footprint in Antarctica makes consideration of this topic more pressing, as the number of locations known to be pristine habitats, where increasingly sophisticated cutting-edge research techniques may be used to their full potential, declines. Examination of the Protected Areas system of the Antarctic Treaty shows that microbial habitats are generally poorly protected. No other continent on Earth is dominated to the same degree by microbial species, and real opportunities exist to develop new ways of conceptualising and implementing conservation of microbial biogeography on a continental scale. Here we highlight potential threats both to the conservation of terrestrial microbial ecosystems, and to future scientific research requiring their study.

  10. Structure and dynamics of Antarctic fish neuroglobin assessed by computer simulations.

    Science.gov (United States)

    Boron, Ignacio; Russo, Roberta; Boechi, Leonardo; Cheng, C-H Christina; di Prisco, Guido; Estrin, Darío A; Verde, Cinzia; Nadra, Alejandro D

    2011-03-01

    Neuroglobin (Ngb) is a heme protein, highly conserved along evolution, predominantly found in the nervous system. It is upregulated by hypoxia and ischemia and may have a neuroprotective role under hypoxic stress. Although many other roles have been proposed, the physiological function is still unclear. Antarctic icefishes lack hemoglobin and some species also lack myoglobin, but all have Ngb and thus may help the elucidation of Ngb function. We present the first theoretically derived structure of fish Ngb and describe its behavior using molecular dynamics simulations. Specifically, we sequenced and analyzed Ngbs from a colorless-blooded Antarctic icefish species Chaenocephalus aceratus and a related red-blooded species (Dissostichus mawsoni). Both fish Ngbs are 6-coordinated but have some peculiarities that differentiate them from mammalian counterparts: they have extensions in the N and C termini that can interact with the EF loop, and a gap in the alignment that changes the CD-region structure/dynamics that has been found to play a key role in human neuroglobin. Our results suggest that a single mutation between both fish Ngbs is responsible for significant difference in the behavior of the proteins. The functional role of these characteristics is discussed.

  11. Persistent organic pollutants in the Antarctic coastal environment and their bioaccumulation in penguins.

    Science.gov (United States)

    Mwangi, John Kennedy; Lee, Wen-Jhy; Wang, Lin-Chi; Sung, Ping-Jyun; Fang, Lee-Shing; Lee, Yen-Yi; Chang-Chien, Guo-Ping

    2016-09-01

    Persistent organic pollutants (POPs), including polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs), polychlorinated biphenyls (PCBs), polybrominated dibenzo-p-dioxins and dibenzofurans (PBDD/Fs), polybrominated biphenyls (PBBs), and polybrominated diphenyl ethers (PBDEs), have been identified in penguins, lichens, soils, and ornithogenic soils in the Antarctic coastal environment in this study. To the best of our knowledge, no previous study has reported PBDD/F and PBB data from Antarctica. The POP mass contents in penguins were in the following order: PCBs > PBDEs > PCDD/Fs; PCBs were the dominant pollutants (6310-144,000 pg/g-lipid), with World Health Organization toxic equivalency values being 2-14 times higher than those of PCDD/Fs. Long-range atmospheric transport is the most primary route by which POPs travel to Antarctica; however, local sources, such as research activities and penguin colonies, also influence POP distribution in the local Antarctic environment. In penguins, the biomagnification factor (BMF) of PCBs was 61.3-3760, considerably higher than that for other POPs. According to BMF data in Adélie penguins, hydrophobic PBDE congeners were more biomagnified at log Kow > 6, and levels decreased at log Kow > 7.5 because larger molecular sizes inhibited transfer across cell membranes.

  12. Divergent trajectories of Antarctic surface melt under two 21st century climate scenarios

    NARCIS (Netherlands)

    Trusel, L.D.; Frey, Karen; Das, Sarah; Karnauskas, Kristopher; Kuipers Munneke, P.; van Meijgaard, E.; van den Broeke, M.R.

    2015-01-01

    Ice shelves modulate Antarctic contributions to sea-level rise and thereby represent a critical, climate-sensitive interface between the Antarctic ice sheet and the global ocean. Following rapid atmospheric warming over the past decades, Antarctic Peninsula ice shelves have progressively retreated,

  13. Isolation and characterization of Campylobacter spp. from Antarctic fur seals (Arctocephalus gazella) at Deception Island, Antarctica.

    Science.gov (United States)

    García-Peña, F J; Pérez-Boto, D; Jiménez, C; San Miguel, E; Echeita, A; Rengifo-Herrera, C; García-Párraga, D; Ortega-Mora, L M; Pedraza-Díaz, S

    2010-09-01

    The presence of Campylobacter spp. was investigated in 41 Antarctic fur seals (Arctocephalus gazella) and 9 Weddell seals (Leptonychotes weddellii) at Deception Island, Antarctica. Infections were encountered in six Antarctic fur seals. The isolates, the first reported from marine mammals in the Antarctic region, were identified as Campylobacter insulaenigrae and Campylobacter lari.

  14. 78 FR 41960 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2013-07-12

    ... Environmental Protocol to the Antarctic Treaty. All other wastes would be packaged and removed to the yacht for... Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978 AGENCY: National Science Foundation. ACTION: Notice of Permit Applications Received under the Antarctic Conservation Act...

  15. 77 FR 9707 - U.S. Antarctic Program Blue Ribbon Panel Review; Notice of Meeting

    Science.gov (United States)

    2012-02-17

    ..., innovative, affordable, sustainable, and consistent with the Antarctic Treaty. Agenda: Present the Panel with... U.S. Antarctic Program Blue Ribbon Panel Review; Notice of Meeting In accordance with Federal... following meeting: Name: U.S. Antarctic Program Blue Ribbon Panel Review, 76826. Date/Time: March 5, 2012,...

  16. 78 FR 41959 - Notice of Permit Modification Received Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2013-07-12

    ... Modification Requested: The Foundation must report to the Antarctic Treaty annually, no later than June 1 on... Notice of Permit Modification Received Under the Antarctic Conservation Act of 1978 AGENCY: National Science Foundation. ACTION: Notice of permit modification under the Antarctic Conservation Act of...

  17. 76 FR 63329 - U.S. Antarctic Program Blue Ribbon Panel Review; Notice of Meeting

    Science.gov (United States)

    2011-10-12

    ..., affordable, sustainable, and consistent with the Antarctic Treaty. Agenda: First meeting of the Panel to... Doc No: 2011-26281] NATIONAL SCIENCE FOUNDATION U.S. Antarctic Program Blue Ribbon Panel Review... National Science Foundation announces the following meeting: Name: U.S. Antarctic Program Blue Ribbon...

  18. 77 FR 1743 - U.S. Antarctic Program Blue Ribbon Panel; Notice of Meeting

    Science.gov (United States)

    2012-01-11

    ... sound, safe, innovative, affordable, sustainable, and consistent with the Antarctic Treaty. Agenda... U.S. Antarctic Program Blue Ribbon Panel; Notice of Meeting In accordance with Federal Advisory...: Name: U.S. Antarctic Program Blue Ribbon Panel Review, 76826. Date/Time: January 24, 2012, 8 a.m. to...

  19. 78 FR 51213 - Notice of Permits Issued Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2013-08-20

    ... Protocol on Environmental Protection to the Antarctic Treaty done at Madrid on October 4, 1991. The NSF is... Notice of Permits Issued Under the Antarctic Conservation Act of 1978 AGENCY: National Science Foundation. ACTION: Notice of document availability under the Antarctic Conservation of 1978, as amended by...

  20. 77 FR 20852 - U.S. Antarctic Program Blue Ribbon Panel Review; Notice of Meeting

    Science.gov (United States)

    2012-04-06

    ... the Antarctic Treaty. Agenda: Present the Panel with additional programmatic information related to... U.S. Antarctic Program Blue Ribbon Panel Review; Notice of Meeting In accordance with Federal... following meeting: Name: U.S. Antarctic Program Blue Ribbon Panel Review, 76826. Date/Time: April 20,...

  1. 77 FR 38834 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2012-06-29

    ... Science Foundation. ACTION: Notice of permit applications received under the Antarctic Conservation Act of.... SUPPLEMENTARY INFORMATION: The National Science Foundation, as directed by the Antarctic Conservation Act of 1978 (Pub. L. 95-541), as amended by the Antarctic Science, Tourism and Conservation Act of 1996,...

  2. 78 FR 28000 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2013-05-13

    ... Science Foundation. ACTION: Notice of Permit Applications Received under the Antarctic Conservation Act of... National Science Foundation, as directed by the Antarctic Conservation Act of 1978 (Pub. L. 95-541), as amended by the Antarctic Science, Tourism and Conservation Act of 1996, has developed regulations for...

  3. 77 FR 67407 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2012-11-09

    ... Science Foundation. ACTION: Notice of Permit Applications Received under the Antarctic Conservation Act of... National Science Foundation, as directed by the Antarctic Conservation Act of 1978 (Pub. L. 95-541), as amended by the Antarctic Science, Tourism and Conservation Act of 1996, has developed regulations for...

  4. 78 FR 59728 - Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978

    Science.gov (United States)

    2013-09-27

    ... the Antarctic Conservation Act of 1978 (Pub. L. 95-541), as amended by the Antarctic Science, Tourism... From the Federal Register Online via the Government Publishing Office NATIONAL SCIENCE FOUNDATION Notice of Permit Applications Received Under the Antarctic Conservation Act of 1978 AGENCY:...

  5. Characterization of resistance to pine wood nematode infection in Pinus thunbergii using suppression subtractive hybridization

    Directory of Open Access Journals (Sweden)

    Hirao Tomonori

    2012-01-01

    Full Text Available Abstract Background Pine wilt disease is caused by the pine wood nematode, Bursaphelenchus xylophilus, which threatens pine forests and forest ecosystems worldwide and causes serious economic losses. In the 40 years since the pathogen was identified, the physiological changes occurring as the disease progresses have been characterized using anatomical and biochemical methods, and resistant trees have been selected via breeding programs. However, no studies have assessed the molecular genetics, e.g. transcriptional changes, associated with infection-induced physiological changes in resistant or susceptible trees. Results We constructed seven subtractive suppression hybridization (SSH cDNA libraries using time-course sampling of trees inoculated with pine wood nematode at 1, 3, or 7 days post-inoculation (dpi in susceptible trees and at 1, 3, 7, or 14 dpi in resistant trees. A total of 3,299 sequences was obtained from these cDNA libraries, including from 138 to 315 non-redundant sequences in susceptible SSH libraries and from 351 to 435 in resistant SSH libraries. Using Gene Ontology hierarchy, those non-redundant sequences were classified into 15 subcategories of the biological process Gene Ontology category and 17 subcategories of the molecular function category. The transcriptional components revealed by the Gene Ontology classification clearly differed between resistant and susceptible libraries. Some transcripts were discriminative: expression of antimicrobial peptide and putative pathogenesis-related genes (e.g., PR-1b, 2, 3, 4, 5, 6 was much higher in susceptible trees than in resistant trees at every time point, whereas expression of PR-9, PR-10, and cell wall-related genes (e.g., for hydroxyproline-rich glycoprotein precursor and extensin was higher in resistant trees than in susceptible trees at 7 and 14 dpi. Conclusions Following inoculation with pine wood nematode, there were marked differences between resistant and susceptible trees

  6. Diversity in a Cold Hot-Spot: DNA-Barcoding Reveals Patterns of Evolution among Antarctic Demosponges (Class Demospongiae, Phylum Porifera.

    Directory of Open Access Journals (Sweden)

    Sergio Vargas

    Full Text Available The approximately 350 demosponge species that have been described from Antarctica represent a faunistic component distinct from that of neighboring regions. Sponges provide structure to the Antarctic benthos and refuge to other invertebrates, and can be dominant in some communities. Despite the importance of sponges in the Antarctic subtidal environment, sponge DNA barcodes are scarce but can provide insight into the evolutionary relationships of this unique biogeographic province.We sequenced the standard barcoding COI region for a comprehensive selection of sponges collected during expeditions to the Ross Sea region in 2004 and 2008, and produced DNA-barcodes for 53 demosponge species covering about 60% of the species collected. The Antarctic sponge communities are phylogenetically diverse, matching the diversity of well-sampled sponge communities in the Lusitanic and Mediterranean marine provinces in the Temperate Northern Atlantic for which molecular data are readily available. Additionally, DNA-barcoding revealed levels of in situ molecular evolution comparable to those present among Caribbean sponges. DNA-barcoding using the Segregating Sites Algorithm correctly assigned approximately 54% of the barcoded species to the morphologically determined species.A barcode library for Antarctic sponges was assembled and used to advance the systematic and evolutionary research of Antarctic sponges. We provide insights on the evolutionary forces shaping Antarctica's diverse sponge communities, and a barcode library against which future sequence data from other regions or depth strata of Antarctica can be compared. The opportunity for rapid taxonomic identification of sponge collections for ecological research is now at the horizon.

  7. A neuropeptide modulates sensory perception in the entomopathogenic nematode Steinernema carpocapsae

    Science.gov (United States)

    Morris, Robert; Wilson, Leonie; Warnock, Neil D.; Maule, Aaron G.

    2017-01-01

    Entomopathogenic nematodes (EPNs) employ a sophisticated chemosensory apparatus to detect potential hosts. Understanding the molecular basis of relevant host-finding behaviours could facilitate improved EPN biocontrol approaches, and could lend insight to similar behaviours in economically important mammalian parasites. FMRFamide-like peptides are enriched and conserved across the Phylum Nematoda, and have been linked with motor and sensory function, including dispersal and aggregating behaviours in the free living nematode Caenorhabditis elegans. The RNA interference (RNAi) pathway of Steinernema carpocapsae was characterised in silico, and employed to knockdown the expression of the FMRFamide-like peptide 21 (GLGPRPLRFamide) gene (flp-21) in S. carpocapsae infective juveniles; a first instance of RNAi in this genus, and a first in an infective juvenile of any EPN species. Our data show that 5 mg/ml dsRNA and 50 mM serotonin triggers statistically significant flp-21 knockdown (-84%***) over a 48 h timecourse, which inhibits host-finding (chemosensory), dispersal, hyperactive nictation and jumping behaviours. However, whilst 1 mg/ml dsRNA and 50 mM serotonin also triggers statistically significant flp-21 knockdown (-51%**) over a 48 h timecourse, it does not trigger the null sensory phenotypes; statistically significant target knockdown can still lead to false negative results, necessitating appropriate experimental design. SPME GC-MS volatile profiles of two EPN hosts, Galleria mellonella and Tenebrio molitor reveal an array of shared and unique compounds; these differences had no impact on null flp-21 RNAi phenotypes for the behaviours assayed. Localisation of flp-21 / FLP-21 to paired anterior neurons by whole mount in situ hybridisation and immunocytochemistry corroborates the RNAi data, further suggesting a role in sensory modulation. These data can underpin efforts to study these behaviours in other economically important parasites, and could facilitate

  8. Detrended-Fluctuation Analysis of Nematode Movement in Heterogeneous Environment

    Science.gov (United States)

    Hapca, S. M.; Gonzalez-Nieto, P.; Tarquis, A. M.

    2009-04-01

    We consider multifractal analysis in time scale to analyse the effect of structural heterogeneity on the movement of the slug-parasitic nematode, Phasmarhabditis hermaphrodita. The study involves image recording and analysis of nematode movement on a homogeneous layer of technical agar compared to movement of nematodes in a structurally heterogeneous environment that was created by adding sand particles to the plates of agar. The temporal scaling properties of the recorded trails were studied using a detrended fluctuation based method to capture the complex dynamic of movement data by comparing the multiscaling characteristics of nematode step lengths as affected by the different environments. A systematic analysis of the exponent of the structure function and the generalized Hurst exponent revealed that, while in homogeneous environment the movement was characterized by a long-range correlation with a Hurst exponent H(q) close to 1, varying little with respect to the order q of the fluctuation function, the impact of sand particle was to reduce the degree of persistence in the movement, the step lenghts being characterized by a smaller Hurst exponent, yet more variable. The results suggest that the presence of structural heterogeneity introduces a new bias into the movement, which plays an important role in complex environments where the nematode movement may be obstructed by soil particles. References Tarquis, A.M., Morato, M. C., Castellanos M.T., Perdigones A. 2009. Comparison of Structure Function and Detrended Fluctuation Analysis of Wind Time Series, Riv. Nuevo Cimento, in press. Gao, J., Cao, Y., Tung, W.-W., Hu J., 2007. Multiscale Analysis of Complex Times Series. Eds. John Wiley & Sons.

  9. Mermithid nematodes found in adult Anopheles from southeastern Senegal

    Directory of Open Access Journals (Sweden)

    Kobylinski Kevin C

    2012-06-01

    Full Text Available Abstract Background Over two dozen mermithid nematodes have been described parasitizing mosquitoes worldwide, however, only two species were found in Africa. Mermithid nematodes kill their mosquito host upon emergence, which suggests that they could be developed as biological control agents of mosquitoes. Both Romanomermis culicivorax and Romanomermis iyengari have been reared for mass release to control numerous Anopheles species vector populations, and in one instance this may have led to reduced malaria prevalence in a human population. Methods Anopheles mosquitoes were collected during a malaria study in southeastern Senegal. Two different adult blood fed mosquitoes had a single mermithid nematode emerge from their anus while they were being held post-capture. Primers from the 18 S rDNA were developed to sequence nematode DNA and screen mosquitoes for mermithid DNA. 18 S rDNA from the Senegalese mermithid and other mermithid entries in GenBank were used to create a Maximum Parsimony tree of the Mermithidae family. Results The mermithid was present in 1.8% (10/551 of the sampled adult Anopheles species in our study area. The mermithid was found in An. gambiae s.s., An. funestus, and An. rufipes from the villages of Ndebou, Boundoucondi, and Damboucoye. Maximum parsimony analysis confirmed that the nematode parasites found in Anopheles were indeed mermithid parasites, and of the mermithid sequences available in GenBank, they are most closely related to Strelkovimermis spiculatus. Conclusions To our knowledge, this is the first report of mermithids from adult Anopheles mosquitoes in Senegal. The mermithid appears to infect Anopheles mosquitoes that develop in diverse larval habitats. Although maximum parsimony analysis determined the mermithid was closely related to Strelkovimermis spiculatus, several characteristics of the mermithid were more similar to the Empidomermis genus. Future mermithid isolations will hopefully allow: formal

  10. ABOUT THE INTERNATIONAL GIS WORKSHOPON ANTARCTIC KING GEORGE ISLAND

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@With rapid scientific development and further exploration towards the nature, the human kind hopes to serve themselves by mastering the natural law. Countries all over the world set much value on the study of Antarctica and have obtained plenty and substantial achievements. So as to strengthen mutual understanding among the countries in Antarctic surveying and mapping and share the achievements, the "International GIS Workshop on Antarctic King George Island", Wuhan, July 6th~7th, 2000 was successfully held in the Lecture Hall of the National Laboratory for Information Engineering in Surveying, Mapping and Remote Sensing (LIESMARS). It was jointly held by the National Research Center on Antarctic Surveying and Mapping and LIESMARS, and sponsored by the National Polar Region Inspection Office, National Natural Scientific Foundation Committee, the State Bureau of Surveying and Mapping, the former Wuhan Technical University of Surveying and Mapping.

  11. Genetics differentiation between Arctic and Antarctic monothalamous foraminiferans

    DEFF Research Database (Denmark)

    Pawlowski, Jan; Majewski, Wojciech; Longet, David;

    2008-01-01

    Monothalamous (single-chambered) foraminifers are a major component of the benthic meiofauna in high latitude regions. Several morphologically similar species are common in the Arctic and Antarctic. However, it is uncertain whether these morphospecies are genetically identical, or whether...... their accurate identification is compromised by a lack of distinctive morphological features. To determine the relationship between Arctic and Antarctic species, we have compared SSU rDNA sequences of specimens belonging to four morphotaxa: Micrometula, Psammophaga, Gloiogullmia, and one morphospecies...... Hippocrepinella hirudinea from western Svalbard (Arctic) and McMurdo Sound (Antarctic). Wherever possible, we include in our analyses representatives of these taxa from the deep Arctic and Southern Oceans, as well as from Northern European fjords. We found that in all cases, the bipolar populations were clearly...

  12. (Environmental impact statement on the US Antarctic program)

    Energy Technology Data Exchange (ETDEWEB)

    Reed, R.M.; Railsback, S.F.; McLean, R.B.

    1989-12-22

    Three staff members from Oak Ridge National Laboratory (ORNL) participated in a site visit to US Antarctic Program (USAP) facilities at McMurdo Station, Amundsen-Scott South Pole Station, and remote field and support sites. Interviews were conducted with National Science Foundation, Navy, and ITT/Antarctic Services staff responsible for environmental management functions. The ORNL team visited all facilities at McMurdo Station, three remote field camps, a Navy refueling facility, South Pole Station, and Scott Base (a New Zealand installation). In general, the team found that environmental impacts of the USAP are minor for the Antarctic continent as a whole. Improvements for the handling and disposal of solid wastes and the discharge of wastewaters that have been initiated should help minimize environmental impacts of USAP activities. The information collected during the site visit will be used in a draft supplemental environmental impact statement on the USAP to be published for public review in June 1990.

  13. Organic amendments and their influences on plant-parasitic and free-living nematodes: a promising method for nematode management?

    NARCIS (Netherlands)

    Thoden, T.C.; Korthals, G.W.; Termorshuizen, A.J.

    2011-01-01

    The use of organic soil amendments, such as green manures, animal manures, composts or slurries, certainly has many advantageous aspects for soil quality and is suggested as a promising tool for the management of plant-parasitic nematodes. However, during a recent literature survey we also found num

  14. Recovery and reproduction of an Antarctic tardigrade retrieved from a moss sample frozen for over 30 years.

    Science.gov (United States)

    Tsujimoto, Megumu; Imura, Satoshi; Kanda, Hiroshi

    2016-02-01

    Long-term survival has been one of the most studied of the extraordinary physiological characteristics of cryptobiosis in micrometazoans such as nematodes, tardigrades and rotifers. In the available studies of long-term survival of micrometazoans, instances of survival have been the primary observation, and recovery conditions of animals or subsequent reproduction are generally not reported. We therefore documented recovery conditions and reproduction immediately following revival of tardigrades retrieved from a frozen moss sample collected in Antarctica in 1983 and stored at -20 °C for 30.5 years. We recorded recovery of two individuals and development of a separate egg of the Antarctic tardigrade, Acutuncus antarcticus, providing the longest records of survival for tardigrades as animals or eggs. One of the two resuscitated individuals and the hatchling successfully reproduced repeatedly after their recovery from long-term cryptobiosis. This considerable extension of the known length of long-term survival of tardigrades recorded in our study is interpreted as being associated with the minimum oxidative damage likely to have resulted from storage under stable frozen conditions. The long recovery times of the revived tardigrades observed is suggestive of the requirement for repair of damage accrued over 30 years of cryptobiosis. Further more detailed studies will improve understanding of mechanisms and conditions underlying the long-term survival of cryptobiotic organisms.

  15. Mitochondrial function in Antarctic nototheniids with ND6 translocation.

    Directory of Open Access Journals (Sweden)

    Felix C Mark

    Full Text Available Fish of the suborder Notothenioidei have successfully radiated into the Southern Ocean and today comprise the dominant fish sub-order in Antarctic waters in terms of biomass and species abundance. During evolution in the cold and stable Antarctic climate, the Antarctic lineage of notothenioids developed several unique physiological adaptations, which make them extremely vulnerable to the rapid warming of Antarctic waters currently observed. Only recently, a further phenomenon exclusive to notothenioid fish was reported: the translocation of the mitochondrial gene encoding the NADH Dehydrogenase subunit 6 (ND6, an indispensable part of complex I in the mitochondrial electron transport system.This study investigated the potential physiological consequences of ND6 translocation for the function and thermal sensitivity of the electron transport system in isolated liver mitochondria of the two nototheniid species Notothenia coriiceps and Notothenia rossii, with special attention to the contributions of complex I (NADH DH and complex II (Succinate DH to oxidative phosphorylation. Furthermore, enzymatic activities of NADH:Cytochrome c Oxidoreductase and Cytochrome C Oxidase were measured in membrane-enriched tissue extracts.During acute thermal challenge (0-15°C, capacities of mitochondrial respiration and enzymatic function in the liver could only be increased until 9°C. Mitochondrial complex I (NADH Dehydrogenase was fully functional but displayed a higher thermal sensitivity than the other complexes of the electron transport system, which may specifically result from its unique amino acid composition, revealing a lower degree of stability in notothenioids in general. We interpret the translocation of ND6 as functionally neutral but the change in amino acid sequence as adaptive and supportive of cold stenothermy in Antarctic nototheniids. From these findings, an enhanced sensitivity to ocean warming can be deduced for Antarctic notothenioid fish.

  16. Mitochondrial function in Antarctic nototheniids with ND6 translocation.

    Science.gov (United States)

    Mark, Felix C; Lucassen, Magnus; Strobel, Anneli; Barrera-Oro, Esteban; Koschnick, Nils; Zane, Lorenzo; Patarnello, Tomaso; Pörtner, Hans O; Papetti, Chiara

    2012-01-01

    Fish of the suborder Notothenioidei have successfully radiated into the Southern Ocean and today comprise the dominant fish sub-order in Antarctic waters in terms of biomass and species abundance. During evolution in the cold and stable Antarctic climate, the Antarctic lineage of notothenioids developed several unique physiological adaptations, which make them extremely vulnerable to the rapid warming of Antarctic waters currently observed. Only recently, a further phenomenon exclusive to notothenioid fish was reported: the translocation of the mitochondrial gene encoding the NADH Dehydrogenase subunit 6 (ND6), an indispensable part of complex I in the mitochondrial electron transport system.This study investigated the potential physiological consequences of ND6 translocation for the function and thermal sensitivity of the electron transport system in isolated liver mitochondria of the two nototheniid species Notothenia coriiceps and Notothenia rossii, with special attention to the contributions of complex I (NADH DH) and complex II (Succinate DH) to oxidative phosphorylation. Furthermore, enzymatic activities of NADH:Cytochrome c Oxidoreductase and Cytochrome C Oxidase were measured in membrane-enriched tissue extracts.During acute thermal challenge (0-15°C), capacities of mitochondrial respiration and enzymatic function in the liver could only be increased until 9°C. Mitochondrial complex I (NADH Dehydrogenase) was fully functional but displayed a higher thermal sensitivity than the other complexes of the electron transport system, which may specifically result from its unique amino acid composition, revealing a lower degree of stability in notothenioids in general. We interpret the translocation of ND6 as functionally neutral but the change in amino acid sequence as adaptive and supportive of cold stenothermy in Antarctic nototheniids. From these findings, an enhanced sensitivity to ocean warming can be deduced for Antarctic notothenioid fish.

  17. Antarctic marine biodiversity and deep-sea hydrothermal vents.

    Directory of Open Access Journals (Sweden)

    Steven L Chown

    2012-01-01

    Full Text Available The diversity of many marine benthic groups is unlike that of most other taxa. Rather than declining from the tropics to the poles, much of the benthos shows high diversity in the Southern Ocean. Moreover, many species are unique to the Antarctic region. Recent work has shown that this is also true of the communities of Antarctic deep-sea hydrothermal vents. Vent ecosystems have been documented from many sites across the globe, associated with the thermally and chemically variable habitats found around these, typically high temperature, streams that are rich in reduced compounds and polymetallic sulphides. The animal communities of the East Scotia Ridge vent ecosystems are very different to those elsewhere, though the microbiota, which form the basis of vent food webs, show less differentiation. Much of the biological significance of deep-sea hydrothermal vents lies in their biodiversity, the diverse biochemistry of their bacteria, the remarkable symbioses among many of the marine animals and these bacteria, and the prospects that investigations of these systems hold for understanding the conditions that may have led to the first appearance of life. The discovery of diverse and unusual Antarctic hydrothermal vent ecosystems provides opportunities for new understanding in these fields. Moreover, the Antarctic vents south of 60°S benefit from automatic conservation under the Convention on the Conservation of Antarctic Marine Living Resources and the Antarctic Treaty. Other deep-sea hydrothermal vents located in international waters are not protected and may be threatened by growing interests in deep-sea mining.

  18. Antarctic Porifera database from the Spanish benthic expeditions

    Directory of Open Access Journals (Sweden)

    Pilar Rios

    2014-04-01

    Full Text Available The information about the sponges in this dataset is derived from the samples collected during five Spanish Antarctic expeditions: Bentart 94, Bentart 95, Gebrap 96, Ciemar 99/00 and Bentart 2003. Samples were collected in the Antarctic Peninsula and Bellingshausen Sea at depths ranging from 4 to 2044 m using va­rious sampling gears.The Antarctic Porifera database from the Spanish benthic expeditions is unique as it provides in­formation for an under-explored region of the Southern Ocean (Bellingshausen Sea. It fills an information gap on Antarctic deep-sea sponges, for which there were previously very few data.This phylum is an important part of the Antarctic biota and plays a key role in the structure of the Antarctic marine benthic community due to its considerable diversity and predominance in different areas. It is often a dominant component of Southern Ocean benthic communities.The quality of the data was controlled very thoroughly with GPS systems onboard the R/V Hesperides and by checking the data against the World Porifera Database (which is part of the World Register of Marine Species, WoRMS. The data are therefore fit for completing checklists, inclusion in biodivers­ity pattern analysis and niche modelling. The authors can be contacted if any additional information is needed before carrying out detailed biodiversity or biogeographic studies.The dataset currently contains 767 occurrence data items that have been checked for systematic reliability. This database is not yet complete and the collection is growing. Specimens are stored in the author’s collection at the Spanish Institute of Oceanography (IEO in the city of Gijón (Spain. The data are available in GBIF.

  19. 食线虫微生物防控病原线虫的研究%Research on Nematophagous Microorganisms for Biological Control of Pathogenic Nematodes

    Institute of Scientific and Technical Information of China (English)

    李娟; 张克勤

    2013-01-01

    植物寄生线虫是世界范围内普遍发生的植物病害,其中尤以根结线虫、胞囊线虫最为严重。利用食线虫微生物资源开发生物杀线虫剂来防治植物病原线虫日益受到各国科研人员的重视。本文对近年来国内外食线虫微生物资源挖掘、食线虫微生物侵染线虫的机制和具杀线虫活性的次生代谢产物分离、纯化等的研究结果进行了综述,并总结分析了食线虫微生物防控植物病原线虫的成功实例。期盼为研发高效环保的植物线虫生防菌剂提供文献参考。%Plant-parasitic nematodes, including root-knot nematodes and cyst nematodes, are the most difficult to control in crop and wood pests. There is a great interest in using nematophagous microorganisms as nematocides to control plant parasitic nematodes. Here we reviewed molecular mechanisms, resources and secondary metabolites of the abundant nematophagous microorganisms. These informations provided theoretical foundations for the development and application of high efficiency and environmental friendly nematode biocontrol agents.

  20. Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions.

    Science.gov (United States)

    Powers, T O; Bernard, E C; Harris, T; Higgins, R; Olson, M; Olson, S; Lodema, M; Matczyszyn, J; Mullin, P; Sutton, L; Powers, K S

    2016-03-03

    There are many nematode species that, following formal description, are seldom mentioned again in the scientific literature. Lobocriconema thornei and L. incrassatum are two such species, described from North American forests, respectively 37 and 49 years ago. In the course of a 3-year nematode biodiversity survey of North American ecoregions, specimens resembling Lobocriconema species appeared in soil samples from both grassland and forested sites. Using a combination of molecular and morphological analyses, together with a set of species delimitation approaches, we have expanded the known range of these species, added to the species descriptions, and discovered a related group of species that form a monophyletic group with the two described species. In this study, 148 specimens potentially belonging to the genus Lobocriconema were isolated from soil, individually measured, digitally imaged, and DNA barcoded using a 721 bp region of cytochrome oxidase subunit 1 (COI). One-third of the specimens were also analyzed using amplified DNA from the 3' region of the small subunit ribosomal RNA gene (18SrDNA) and the adjacent first internal transcribed spacer (ITS1). Eighteen mitochondrial haplotype groups, falling into four major clades, were identified by well-supported nodes in Bayesian and maximum likelihood trees and recognized as distinct lineages by species delimitation metrics. Discriminant function analysis of a set of morphological characters indicated that the major clades in the dataset possessed a strong morphological signal that decreased in comparisons of haplotype groups within clades. Evidence of biogeographic and phylogeographic patterns was apparent in the dataset. COI haplotype diversity was high in the southern Appalachian Mountains and Gulf Coast states and lessened in northern temperate forests. Lobocriconema distribution suggests the existence of phylogeographic patterns associated with recolonization of formerly glaciated regions by eastern

  1. 45 CFR 670.29 - Designation of Antarctic Specially Protected Areas, Specially Managed Areas and Historic Sites...

    Science.gov (United States)

    2010-10-01

    ... the Antarctic Treaty Parties for special protection and are hereby designated as Antarctic Specially... Elizabeth Land, East Antarctica (b) The following areas have been designated by the Antarctic Treaty Parties... Antarctica (c) The following areas have been designated by the Antarctic Treaty Parties as historic sites...

  2. Discrimination of gastrointestinal nematode eggs from crude fecal egg preparations by inhibitor-resistant conventional and real-time PCR.

    Science.gov (United States)

    Demeler, Janina; Ramünke, Sabrina; Wolken, Sonja; Ianiello, Davide; Rinaldi, Laura; Gahutu, Jean Bosco; Cringoli, Giuseppe; von Samson-Himmelstjerna, Georg; Krücken, Jürgen

    2013-01-01

    Diagnosis of gastrointestinal nematodes relies predominantly on coproscopic methods such as flotation, Kato-Katz, McMaster or FLOTAC. Although FLOTAC allows accurate quantification, many nematode eggs can only be differentiated to genus or family level. Several molecular diagnostic tools discriminating closely related species suffer from high costs for DNA isolation from feces and limited sensitivity since most kits use only small amounts of feces (PCR from crude egg preparations was designed for full compatibility with FLOTAC to accurately quantify eggs per gram feces (epg) and determine species composition. Eggs were recovered from the flotation solution and concentrated by sieving. Lysis was achieved by repeated boiling and freezing cycles - only Trichuris eggs required additional mechanic disruption. Egg lysates were directly used as template for PCR with Phusion DNA polymerase which is particularly resistant to PCR inhibitors. Qualitative results were obtained with feces of goats, cattle, horses, swine, cats, dogs and mice. The finally established protocol was also compatible with quantitative real-time PCR in the presence of EvaGreen and no PCR inhibition was detectable when extracts were diluted at least fourfold. Sensitivity was comparable to DNA isolation protocols and spiked samples with five epg were reliably detected. For Toxocara cati a detection limit below one epg was demonstrated. It was possible to distinguish T. cati and Toxocara canis using high resolution melt (HRM) analysis, a rapid tool for species identification. In human samples, restriction fragment length polymorphism (RFLP) and HRM analysis were used to discriminate Necator americanus and Ancylostoma duodenale. The method is able to significantly improve molecular diagnosis of gastrointestinal nematodes by increasing speed and sensitivity while decreasing overall costs. For identification of species or resistance alleles, analysis of PCR products with many different post PCR methods can

  3. Discrimination of gastrointestinal nematode eggs from crude fecal egg preparations by inhibitor-resistant conventional and real-time PCR.

    Directory of Open Access Journals (Sweden)

    Janina Demeler

    Full Text Available Diagnosis of gastrointestinal nematodes relies predominantly on coproscopic methods such as flotation, Kato-Katz, McMaster or FLOTAC. Although FLOTAC allows accurate quantification, many nematode eggs can only be differentiated to genus or family level. Several molecular diagnostic tools discriminating closely related species suffer from high costs for DNA isolation from feces and limited sensitivity since most kits use only small amounts of feces (<1 g. A direct PCR from crude egg preparations was designed for full compatibility with FLOTAC to accurately quantify eggs per gram feces (epg and determine species composition. Eggs were recovered from the flotation solution and concentrated by sieving. Lysis was achieved by repeated boiling and freezing cycles - only Trichuris eggs required additional mechanic disruption. Egg lysates were directly used as template for PCR with Phusion DNA polymerase which is particularly resistant to PCR inhibitors. Qualitative results were obtained with feces of goats, cattle, horses, swine, cats, dogs and mice. The finally established protocol was also compatible with quantitative real-time PCR in the presence of EvaGreen and no PCR inhibition was detectable when extracts were diluted at least fourfold. Sensitivity was comparable to DNA isolation protocols and spiked samples with five epg were reliably detected. For Toxocara cati a detection limit below one epg was demonstrated. It was possible to distinguish T. cati and Toxocara canis using high resolution melt (HRM analysis, a rapid tool for species identification. In human samples, restriction fragment length polymorphism (RFLP and HRM analysis were used to discriminate Necator americanus and Ancylostoma duodenale. The method is able to significantly improve molecular diagnosis of gastrointestinal nematodes by increasing speed and sensitivity while decreasing overall costs. For identification of species or resistance alleles, analysis of PCR products with many

  4. DECADAL VARIABILITY OF THE ANTARCTIC OSCILLATION

    Institute of Scientific and Technical Information of China (English)

    龚道溢; 王绍武

    2001-01-01

    This paper summarizes the long-term and decadal time-scale fluctuations of atmospheric circulation in the Southern (Hemisphere) middle and high latitudes. The long time series of Antarctic Oscillation Indices (AOIs) were established for January, April, July and October based on the historical sea level pressure maps and NCEP/NCAR reanalysis surface pressure data set. It was found that the AOI of January had upward trend at a rate of 1.17 hPa/100 a, and July had downward trend at a rate of -1.49 hPa/100 a since 1871. The method of wavelet analysis was applied to detect the low frequency characteristics of AOIs, and it is clear that there are decadal variations in the time scale of about 20-30 years in all 4 indices. Since the averaged value of 4 months could explain most variance of annual AOI thus it is reasonable using the mean AOI of January, April, July and October to represent the annual AOI. The value of annual AOI was much lower in periods of about 1894-1901. 1910-1935, and was much higher in periods of about 1880 -1893, 1936-1945. The positive anomalies were remarkable since 1980s. Power spectra of modeled AOIs from Hadley Center Control Integration (HCCI) were compared with the observations, it is found that the interannual time scale frequencies were more significant than decadal frequencies. But, there also had the possibility for generating weak decadal fluctuations in some special months and years by Hasselmann mechanism.

  5. Microbiology and Geochemistry of Antarctic Paleosols

    Science.gov (United States)

    Mahaney, W. C.; Malloch, D.; Hancock, R. G. V.; Campbell, I. B.; Sheppard, D.

    2000-08-01

    Samples of ancient soils from horizons in paleosols from the Quartermain Mountains (Aztec and New Mountain areas of the Antarctic Dry Valleys) were analyzed for their chemical composition and microbiology to determine the accumulation and movement of salts and other soluble constituents. The salt concentrations are of special interest because they are considered to be a function of age, derived in part from nearby oceanic and high altitude atmospheric sources. The geochemistry of ancient Miocene-age paleosols in these areas is the direct result of the deposition and weathering of till, derived principally from dolerite and sandstone source rock, in association with airborne-influxed salts. Paleosols nearer the coast have greater contents of chlorine, and farther inland near the Inland Ice Sheet, nitrogen tends to increase on a relative basis. The accumulation and vertical distribution of salts and other soluble chemical elements indicate relative amounts of movement in the profile over long periods of time, to the order of several million years. Iron, both in total concentration and in the form of various extracts, indicates it can be used as a geochronometer to assess the buildup of goethite plus hematite over time in the paleosols. Trends for ferrihydrite, a partially soluble Fe-hydroxide, shows limited profile translocation that might be related to the movement of salt. Six of the eight selected subsamples from paleosol horizons in three soil profiles contained nil concentrations of bacteria and fungi. However, two horizons at depths of between three to eight centimeters yielded several colonies of the fungi Beauveria bassiana and Penicillium spp., indicating some input of organic carbon. Beauveria bassiana is often reported in association with insects and is used commercially for the biological control of some insect pests. Penicillium species are commonly isolated from Arctic, temperate and tropical soils and are known to utilize a wide variety of organic

  6. Running PILOT: operational challenges and plans for an Antarctic Observatory

    Science.gov (United States)

    McGrath, Andrew; Saunders, Will; Gillingham, Peter; Ward, David; Storey, John; Lawrence, Jon; Haynes, Roger

    2008-07-01

    We highlight the operational challenges and planned solutions faced by an optical observatory taking advantage of the superior astronomical observing potential of the Antarctic plateau. Unique operational aspects of an Antarctic optical observatory arise from its remoteness, the polar environment and the unusual observing cycle afforded by long continuous periods of darkness and daylight. PILOT is planned to be run with remote observing via satellite communications, and must overcome both limited physical access and data transfer. Commissioning and lifetime operations must deal with extended logistics chains, continual wintertime darkness, extremely low temperatures and frost accumulation amidst other challenging issues considered in the PILOT operational plan, and discussed in this presentation.

  7. Antarctic marine gravity field from high-density satellite altimetry

    Science.gov (United States)

    Sandwell, David T.

    1992-01-01

    High-density (about 2-km profile spacing) Geosat/GM altimetry profiles were obtained for Antarctic waters (6-deg S to 72 deg S) and converted to vertical gravity gradient, using Laplace's equation to directly calculate gravity gradient from vertical deflection grids and Fourier analysis to construct gravity anomalies from two vertical deflection grids. The resultant gravity grids have resolution and accuracy comparable to shipboard gravity profiles. The obtained gravity maps display many interesting and previously uncharted features, such as a propagating rift wake and a large 'leaky transform' along the Pacific-Antarctic Rise.

  8. 柞蚕寄生线虫及其防治技术的研究概况%Research Progress on Parasitic Nematode of Tussah Silkworm and Its Control Technology

    Institute of Scientific and Technical Information of China (English)

    宋策

    2012-01-01

    classification and identification of nematodes with molecular marker technology to find out the genetic relationship between different tussah silkworm parasitic nematodes, and on artificial propagation of parasitic nematodes and its application in biological pest control.

  9. Differential in vitro pathogenicity of predatory fungi of the genus Monacrosporium for phytonematodes, free-living nematodes and parasitic nematodes of cattle

    Directory of Open Access Journals (Sweden)

    A.P.S. Gomes

    1999-01-01

    Full Text Available In vitro tests were carried out on the pathogenicity of nine isolates of the predatory fungi of the genus Monacrosporium (5 M. sinense isolates, 3 M. appendiculatum and 1 M. thaumasium isolate for a phytonematode (second stage juveniles from Meloidogyne incognita, race 3, a free-living nematode (Panagrellus spp, and two gastrointestinal parasitic nematodes of cattle (infective larvae of Cooperia punctata and Haemonchus placei. A suspension containing 2,000 nematodes from each species was added to Petri dishes containing fungi and grown on 2% water-agar medium at 25oC in the dark for up to 7 days. The dishes were examined every other day for 7 days and predation-free nematodes were counted. The results showed that the free-living nematodes, Panagrellus spp, were the most susceptible (P³98.5% viable. However, a variable susceptibility of the nematodes to different fungi was observed. This indicates that the use of predatory fungi for the environmental control of nematodes will be limited by the multiplicity of nematodes in the environment and their differential susceptibility to fungal isolates of the same genus.

  10. Contrasting time trends of organic contaminants in Antarctic pelagic and benthic food webs.

    Science.gov (United States)

    van den Brink, Nico W; Riddle, Martin J; van den Heuvel-Greve, Martine; van Franeker, Jan Andries

    2011-01-01

    We demonstrate that pelagic Antarctic seabirds show significant decreases in concentrations of some persistent organic pollutants. Trends in Adélie penguins and Southern fulmars fit in a general pattern revealed by a broad literature review. Downward trends are also visible in pelagic fish, contrasting sharply with steady or increasing concentrations in Antarctic benthic organisms. Transfer of contaminants between Antarctic pelagic and benthic food webs is associated with seasonal sea-ice dynamics which may influence the balance between the final receptors of contaminants under different climatic conditions. This complicates the predictability of future trends of emerging compounds in the Antarctic ecosystem, such as of the brominated compounds that we detected in Antarctic petrels. The discrepancy in trends between pelagic and benthic organisms shows that Antarctic biota are still final receptors of globally released organic contaminants and it remains questionable whether the total environmental burden of contaminants in the Antarctic ecosystem is declining.

  11. Assessment of nematode community structure as a bioindicator in river monitoring

    Energy Technology Data Exchange (ETDEWEB)

    Wu, H.C.; Chen, P.C. [Department of Plant Pathology, National Chung Hsing University, 250 Kuo Kuan Rd, Taichung 402, Taiwan (China); Tsay, T.T., E-mail: tttsay@nchu.edu.t [Department of Plant Pathology, National Chung Hsing University, 250 Kuo Kuan Rd, Taichung 402, Taiwan (China)

    2010-05-15

    Nematode communities from river water and sediments were assessed for the abundance, feeding types, maturity indices and nematode channel ratio (NCR). The sampling sites studied included different levels of pollution and contamination from agricultural, industrial and sewage sources. The nematode abundance found in the sediment samples was more than that in the water samples. The lowest nematode abundance in sediment samples and the lowest NCR in water samples were both found at the industrial pollution site. Water samples showed positive correlation between the NCR and river pollution index (RPI). Mean maturity indices in sediment samples were inversely correlated with RPI. The pollutant source determined the relationship between NCR and pollution level, while maturity index always showed negative correlation with pollutant level regardless of the pollutant sources. The nematode abundance and its community structure were both reliable bioindicators for monitoring long-term river pollution in both qualitative and quantitative aspects. - Nematode community structure in rivers is related to the contamination source and level.

  12. A novel ascaroside controls the parasitic life cycle of the entomopathogenic nematode Heterorhabditis bacteriophora.

    Science.gov (United States)

    Noguez, Jaime H; Conner, Elizabeth S; Zhou, Yue; Ciche, Todd A; Ragains, Justin R; Butcher, Rebecca A

    2012-06-15

    Entomopathogenic nematodes survive in the soil as stress-resistant infective juveniles that seek out and infect insect hosts. Upon sensing internal host cues, the infective juveniles regurgitate bacterial pathogens from their gut that ultimately kill the host. Inside the host, the nematode develops into a reproductive adult and multiplies until unknown cues trigger the accumulation of infective juveniles. Here, we show that the entomopathogenic nematode Heterorhabditis bacteriophora uses a small-molecule pheromone to control infective juvenile development. The pheromone is structurally related to the dauer pheromone ascarosides that the free-living nematode Caenorhabditis elegans uses to control its development. However, none of the C. elegans ascarosides are effective in H. bacteriophora, suggesting that there is a high degree of species specificity. Our report is the first to show that ascarosides are important regulators of development in a parasitic nematode species. An understanding of chemical signaling in parasitic nematodes may enable the development of chemical tools to control these species.

  13. Emplacement of Antarctic ice sheet mass affects circumpolar ocean flow

    NARCIS (Netherlands)

    Rugenstein, M.; Stocchi, P.; van der Heydt, A.; Brinkhuis, H.

    2014-01-01

    During the Cenozoic the Antarctic continent experienced large fluctuations in ice-sheet volume. We investigate the effects of Glacial Isostatic Adjustment (GIA) on Southern Ocean circulation for the first continental scale glaciation of Antarctica (~ 34 Myr) by combining solid Earth and ocean dynami

  14. Pioneering work of CAS researchers in Antarctic expedition

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    @@ The first observatory at Dome A On 12 January, China scientific expedition to Antarctica succeeded for a second time in climbing up to Dome A, the highest Antarctic icecap peak. A similar feat was made by Chinese scientists about three years ago in January 2005, leaving first human footprints there.

  15. Spatial-temporal characters of Antarctic sea ice variation

    Institute of Scientific and Technical Information of China (English)

    Ma Lijuan; Lu Longhua; Bian Lingen

    2004-01-01

    Using sea ice concentration dataset covering the period of 1968-2002 obtained from the Hadley Center of UK, this paper investigates characters of Antarctic sea ice variations .The finding demonstrates that the change of mean sea-ice extent is almost consistent with that of sea-ice area, so sea-ice extent can be chosen to go on this research. The maximum and the minimum of Antarctic sea ice appear in September and February respectively. The maximum and the maximal variation of sea ice appear in Weddell Sea and Ross Sea, while the minimum and the minimal variation of sea-ice appear in Antarctic Peninsula. In recent 35 years, as a whole, Antarctic sea ice decreased distinctly. Moreover, there are 5 subdivision characteristic regions considering their different variations. Hereinto, the sea-ice extent of Weddell Sea and Ross Sea regions extends and area increases, while the sea-ice extent of the other three regions contracts and area decreases. They are all of obvious 2-4 years and 5-7 years significant oscillation periods. It is of significance for further understanding the sea-ice-air interaction in Antarctica region and discussing the relationship between sea-ice variation and atmospheric circulation.

  16. Occurrence of a taurine derivative in an antarctic glass sponge.

    Science.gov (United States)

    Carbone, Marianna; Núñez-Pons, Laura; Ciavatta, M Letizia; Castelluccio, Francesco; Avila, Conxita; Gavagnin, Margherita

    2014-04-01

    The n-butanol extract of an Antarctic hexactinellid sponge, Anoxycalyx (Scolymastra) joubini, was found to contain a taurine-conjugated anthranilic acid, never reported so far either as a natural product or by synthesis. The compound was inactive against human cancer cells in an in vitro growth inhibitory test, and also showed no antibacterial activity.

  17. Mass Gains of the Antarctic Ice Sheet Exceed Losses

    Science.gov (United States)

    Zwally, H. Jay; Li, Jun; Robbins, John; Saba, Jack L.; Yi, Donghui; Brenner, Anita; Bromwich, David

    2012-01-01

    During 2003 to 2008, the mass gain of the Antarctic ice sheet from snow accumulation exceeded the mass loss from ice discharge by 49 Gt/yr (2.5% of input), as derived from ICESat laser measurements of elevation change. The net gain (86 Gt/yr) over the West Antarctic (WA) and East Antarctic ice sheets (WA and EA) is essentially unchanged from revised results for 1992 to 2001 from ERS radar altimetry. Imbalances in individual drainage systems (DS) are large (-68% to +103% of input), as are temporal changes (-39% to +44%). The recent 90 Gt/yr loss from three DS (Pine Island, Thwaites-Smith, and Marie-Bryd Coast) of WA exceeds the earlier 61 Gt/yr loss, consistent with reports of accelerating ice flow and dynamic thinning. Similarly, the recent 24 Gt/yr loss from three DS in the Antarctic Peninsula (AP) is consistent with glacier accelerations following breakup of the Larsen B and other ice shelves. In contrast, net increases in the five other DS of WA and AP and three of the 16 DS in East Antarctica (EA) exceed the increased losses. Alternate interpretations of the mass changes driven by accumulation variations are given using results from atmospheric-model re-analysis and a parameterization based on 5% change in accumulation per degree of observed surface temperature change. A slow increase in snowfall with climate waRMing, consistent with model predictions, may be offsetting increased dynamic losses.

  18. Conclusions: Multiple dimensions of human engagement with the Antarctic environment

    NARCIS (Netherlands)

    Liggett, D.; Lamers, M.A.J.; Tin, T.; Maher, P.T.

    2014-01-01

    The future scenarios developed by the contributors to this volume communicate a strong message. They concur that existing environmental management practices and the current system of governance are insufficient to meet the obligations set out under the Madrid Protocol to protect the Antarctic enviro

  19. TEMPERATURE REQUIREMENTS AND BIOGEOGRAPHY OF ANTARCTIC, ARCTIC AND AMPHIEQUATORIAL SEAWEEDS

    NARCIS (Netherlands)

    WIENCKE, C; BARTSCH, [No Value; BISCHOFF, B; PETERS, AF; BREEMAN, AM

    1994-01-01

    The temperature requirements for growth and survival of cold water seaweeds from both Hemispheres are compared and discussed in relation to the climatic history of the various regions and in relation to the origin of amphiequatorial distribution patterns. Endemic Antarctic species are most strongly

  20. Local scaling characteristics of Antarctic surface layer turbulence

    Directory of Open Access Journals (Sweden)

    S. Basu

    2010-03-01

    Full Text Available Over the past years, several studies have validated Nieuwstadt's local scaling hypothesis by utilizing turbulence observations from the mid-latitude, nocturnal stable boundary layers. In this work, we probe into the local scaling characteristics of polar, long-lived stable boundary layers by analyzing turbulence data from the South Pole region of the Antarctic Plateau.