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Sample records for annotation assessment project

  1. nGASP - the nematode genome annotation assessment project

    Energy Technology Data Exchange (ETDEWEB)

    Coghlan, A; Fiedler, T J; McKay, S J; Flicek, P; Harris, T W; Blasiar, D; Allen, J; Stein, L D

    2008-12-19

    While the C. elegans genome is extensively annotated, relatively little information is available for other Caenorhabditis species. The nematode genome annotation assessment project (nGASP) was launched to objectively assess the accuracy of protein-coding gene prediction software in C. elegans, and to apply this knowledge to the annotation of the genomes of four additional Caenorhabditis species and other nematodes. Seventeen groups worldwide participated in nGASP, and submitted 47 prediction sets for 10 Mb of the C. elegans genome. Predictions were compared to reference gene sets consisting of confirmed or manually curated gene models from WormBase. The most accurate gene-finders were 'combiner' algorithms, which made use of transcript- and protein-alignments and multi-genome alignments, as well as gene predictions from other gene-finders. Gene-finders that used alignments of ESTs, mRNAs and proteins came in second place. There was a tie for third place between gene-finders that used multi-genome alignments and ab initio gene-finders. The median gene level sensitivity of combiners was 78% and their specificity was 42%, which is nearly the same accuracy as reported for combiners in the human genome. C. elegans genes with exons of unusual hexamer content, as well as those with many exons, short exons, long introns, a weak translation start signal, weak splice sites, or poorly conserved orthologs were the most challenging for gene-finders. While the C. elegans genome is extensively annotated, relatively little information is available for other Caenorhabditis species. The nematode genome annotation assessment project (nGASP) was launched to objectively assess the accuracy of protein-coding gene prediction software in C. elegans, and to apply this knowledge to the annotation of the genomes of four additional Caenorhabditis species and other nematodes. Seventeen groups worldwide participated in nGASP, and submitted 47 prediction sets for 10 Mb of the C

  2. Meaningful Assessment: An Annotated Bibliography.

    Science.gov (United States)

    Thrond, Mary A.

    The annotated bibliography contains citations of nine references on alternative student assessment methods in second language programs, particularly at the secondary school level. The references include a critique of conventional reading comprehension assessment, a discussion of performance assessment, a proposal for a multi-trait, multi-method…

  3. Annotation Style Guide for the Blinker Project

    CERN Document Server

    Melamed, I D

    1998-01-01

    This annotation style guide was created by and for the Blinker project at the University of Pennsylvania. The Blinker project was so named after the ``bilingual linker'' GUI, which was created to enable bilingual annotators to ``link'' word tokens that are mutual translations in parallel texts. The parallel text chosen for this project was the Bible, because it is probably the easiest text to obtain in electronic form in multiple languages. The languages involved were English and French, because, of the languages with which the project co-ordinator was familiar, these were the two for which a sufficient number of annotators was likely to be found.

  4. Harnessing Collaborative Annotations on Online Formative Assessments

    Science.gov (United States)

    Lin, Jian-Wei; Lai, Yuan-Cheng

    2013-01-01

    This paper harnesses collaborative annotations by students as learning feedback on online formative assessments to improve the learning achievements of students. Through the developed Web platform, students can conduct formative assessments, collaboratively annotate, and review historical records in a convenient way, while teachers can generate…

  5. Critical Assessment of Function Annotation Meeting, 2011

    Energy Technology Data Exchange (ETDEWEB)

    Friedberg, Iddo

    2015-01-21

    The Critical Assessment of Function Annotation meeting was held July 14-15, 2011 at the Austria Conference Center in Vienna, Austria. There were 73 registered delegates at the meeting. We thank the DOE for this award. It helped us organize and support a scientific meeting AFP 2011 as a special interest group (SIG) meeting associated with the ISMB 2011 conference. The conference was held in Vienna, Austria, in July 2011. The AFP SIG was held on July 15-16, 2011 (immediately preceding the conference). The meeting consisted of two components, the first being a series of talks (invited and contributed) and discussion sections dedicated to protein function research, with an emphasis on the theory and practice of computational methods utilized in functional annotation. The second component provided a large-scale assessment of computational methods through participation in the Critical Assessment of Functional Annotation (CAFA).

  6. Annotated Bibliography for the DEWPOINT project

    Energy Technology Data Exchange (ETDEWEB)

    Oehmen, Christopher S.

    2009-04-21

    This bibliography covers aspects of the Detection and Early Warning of Proliferation from Online INdicators of Threat (DEWPOINT) project including 1) data management and querying, 2) baseline and advanced methods for classifying free text, and 3) algorithms to achieve the ultimate goal of inferring intent from free text sources. Metrics for assessing the quality and correctness of classification are addressed in the second group. Data management and querying include methods for efficiently storing, indexing, searching, and organizing the data we expect to operate on within the DEWPOINT project.

  7. Annotated Bibliography for the MATADOR Project

    Energy Technology Data Exchange (ETDEWEB)

    Janik, Tadeusz; White, Amanda M.; Pawley, Norma H.; Myers, Kary L.; Oehmen, Christopher S.

    2012-06-07

    The MATADOR project is focused on developing methods to infer the operational mode of facilities that have the potential to be used in weapons development programs. Our central hypothesis is that by persistent, non-intrusive monitoring of such facilities, differences between various use scenarios can be reliably discovered. The impact of success in this area is that new tools and techniques for monitoring and treaty verification would make it easier to reliably discover and document weapons development activities. This document captures the literature that will serve as a basis to approach this task. The relevant literature is divided into topical areas that relate to the various aspects of expected MATADOR project development. We have found that very little work that is directly applicable for our purposes has been published, which has motivated the development of novel methods under the project. Therefore, the manuscripts referenced in this document were selected based on their potential use as foundational blocks for the methods we anticipate developing, or so that we can understand the limitations of existing methods.

  8. Manual Annotation of Translational Equivalence The Blinker Project

    CERN Document Server

    Melamed, I D

    1998-01-01

    Bilingual annotators were paid to link roughly sixteen thousand corresponding words between on-line versions of the Bible in modern French and modern English. These annotations are freely available to the research community from http://www.cis.upenn.edu/~melamed . The annotations can be used for several purposes. First, they can be used as a standard data set for developing and testing translation lexicons and statistical translation models. Second, researchers in lexical semantics will be able to mine the annotations for insights about cross-linguistic lexicalization patterns. Third, the annotations can be used in research into certain recently proposed methods for monolingual word-sense disambiguation. This paper describes the annotated texts, the specially-designed annotation tool, and the strategies employed to increase the consistency of the annotations. The annotation process was repeated five times by different annotators. Inter-annotator agreement rates indicate that the annotations are reasonably rel...

  9. Assessment of protein set coherence using functional annotations

    Directory of Open Access Journals (Sweden)

    Carazo Jose M

    2008-10-01

    Full Text Available Abstract Background Analysis of large-scale experimental datasets frequently produces one or more sets of proteins that are subsequently mined for functional interpretation and validation. To this end, a number of computational methods have been devised that rely on the analysis of functional annotations. Although current methods provide valuable information (e.g. significantly enriched annotations, pairwise functional similarities, they do not specifically measure the degree of homogeneity of a protein set. Results In this work we present a method that scores the degree of functional homogeneity, or coherence, of a set of proteins on the basis of the global similarity of their functional annotations. The method uses statistical hypothesis testing to assess the significance of the set in the context of the functional space of a reference set. As such, it can be used as a first step in the validation of sets expected to be homogeneous prior to further functional interpretation. Conclusion We evaluate our method by analysing known biologically relevant sets as well as random ones. The known relevant sets comprise macromolecular complexes, cellular components and pathways described for Saccharomyces cerevisiae, which are mostly significantly coherent. Finally, we illustrate the usefulness of our approach for validating 'functional modules' obtained from computational analysis of protein-protein interaction networks. Matlab code and supplementary data are available at http://www.cnb.csic.es/~monica/coherence/

  10. Annotating abstract pronominal anaphora in the DAD project

    DEFF Research Database (Denmark)

    Navarretta, Costanza; Olsen, Sussi Anni

    2008-01-01

    n this paper we present an extension of the MATE/GNOME annotation scheme for anaphora (Poesio 2004) which accounts for abstract anaphora in Danish and Italian. By abstract anaphora it is here meant pronouns whose linguistic antecedents are verbal phrases, clauses and discourse segments. The exten...... by applying the DAD annotation scheme on texts and dialogues in the two languages are given and show that th information proposed in the scheme can be recognised in a reliable way....

  11. ProteomeCommons.org collaborative annotation and project management resource integrated with the Tranche repository.

    Science.gov (United States)

    Hill, James A; Smith, Bryan E; Papoulias, Panagiotis G; Andrews, Philip C

    2010-06-01

    ProteomeCommons.org has implemented a resource that incorporates concepts of Web 2.0 social networking for collaborative annotation of data sets placed in the Tranche repository. The annotation tools are part of a project management resource that is effective for individual laboratories or large distributed groups. The creation of the resource was motivated by the need for a way to encourage annotation of data sets with high accuracy and compliance rates. The system is designed to respond to the dynamic nature of research in an easy-to-use fashion through the use of a dynamic data model that does not inhibit the innovation that is important for basic research. Placing the annotation tool within a project manager allows annotation to occur over the life of the project and provides the security and monitoring capabilities needed for large or small collaborative projects. The resource effectively supports distributed groups of investigators working on common data sets and is available immediately at https://ProteomeCommons.org . In addition, a silver compliant data resource based on ProteomeCommons.org has been developed for cancer Biomedical Informatics Grid (caBIG) to allow much broader access to the annotations describing data sets in the Tranche repository.

  12. Cross-language projection of multilayer semantic annotation in the NewsReader Wikinews Italian Corpus (WItaC)

    OpenAIRE

    Speranza, Manuela; Minard, Anne-Lyse

    2016-01-01

    In this paper we present the annotation of events, entities, relations and coreference chains performed on Italian translations of English annotated texts. As manual annotation is a very expensive and time-consuming task, we devised a crosslingual projection procedure based on the manual alignment of annotated elements. In questo articolo descriviamo l’annotazione degli eventi, delle entità, delle relazioni e delle catene di coreferenza realizzata su traduzioni in italiano di testi inglesi...

  13. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

    Directory of Open Access Journals (Sweden)

    Holt Carson

    2011-12-01

    Full Text Available Abstract Background Second-generation sequencing technologies are precipitating major shifts with regards to what kinds of genomes are being sequenced and how they are annotated. While the first generation of genome projects focused on well-studied model organisms, many of today's projects involve exotic organisms whose genomes are largely terra incognita. This complicates their annotation, because unlike first-generation projects, there are no pre-existing 'gold-standard' gene-models with which to train gene-finders. Improvements in genome assembly and the wide availability of mRNA-seq data are also creating opportunities to update and re-annotate previously published genome annotations. Today's genome projects are thus in need of new genome annotation tools that can meet the challenges and opportunities presented by second-generation sequencing technologies. Results We present MAKER2, a genome annotation and data management tool designed for second-generation genome projects. MAKER2 is a multi-threaded, parallelized application that can process second-generation datasets of virtually any size. We show that MAKER2 can produce accurate annotations for novel genomes where training-data are limited, of low quality or even non-existent. MAKER2 also provides an easy means to use mRNA-seq data to improve annotation quality; and it can use these data to update legacy annotations, significantly improving their quality. We also show that MAKER2 can evaluate the quality of genome annotations, and identify and prioritize problematic annotations for manual review. Conclusions MAKER2 is the first annotation engine specifically designed for second-generation genome projects. MAKER2 scales to datasets of any size, requires little in the way of training data, and can use mRNA-seq data to improve annotation quality. It can also update and manage legacy genome annotation datasets.

  14. Assessment of Students Projects

    DEFF Research Database (Denmark)

    Kofoed, Lise B.; Stachowicz, Marian S.

    2012-01-01

    The evaluation and assessment of engineering programmes is a big issue, and there exist many concepts and methods. This paper deals with the assessment methods which can be used when assessing the knowledge, skills and competences developed in projects using PBL (problem based and project organized....... The conclusion is that process as well as product has to be assessed in a way which evaluates all aspects of students’ learning outcomes....

  15. A Pilot Study on Developing a Standardized and Sensitive School Violence Risk Assessment with Manual Annotation.

    Science.gov (United States)

    Barzman, Drew H; Ni, Yizhao; Griffey, Marcus; Patel, Bianca; Warren, Ashaki; Latessa, Edward; Sorter, Michael

    2016-08-16

    School violence has increased over the past decade and innovative, sensitive, and standardized approaches to assess school violence risk are needed. In our current feasibility study, we initialized a standardized, sensitive, and rapid school violence risk approach with manual annotation. Manual annotation is the process of analyzing a student's transcribed interview to extract relevant information (e.g., key words) to school violence risk levels that are associated with students' behaviors, attitudes, feelings, use of technology (social media and video games), and other activities. In this feasibility study, we first implemented school violence risk assessments to evaluate risk levels by interviewing the student and parent separately at the school or the hospital to complete our novel school safety scales. We completed 25 risk assessments, resulting in 25 transcribed interviews of 12-18 year olds from 15 schools in Ohio and Kentucky. We then analyzed structured professional judgments, language, and patterns associated with school violence risk levels by using manual annotation and statistical methodology. To analyze the student interviews, we initiated the development of an annotation guideline to extract key information that is associated with students' behaviors, attitudes, feelings, use of technology and other activities. Statistical analysis was applied to associate the significant categories with students' risk levels to identify key factors which will help with developing action steps to reduce risk. In a future study, we plan to recruit more subjects in order to fully develop the manual annotation which will result in a more standardized and sensitive approach to school violence assessments.

  16. Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome.

    Science.gov (United States)

    Wang, Jia; Chen, Dijun; Lei, Yang; Chang, Ji-Wei; Hao, Bao-Hai; Xing, Feng; Li, Sen; Xu, Qiang; Deng, Xiu-Xin; Chen, Ling-Ling

    2014-01-01

    Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia), and constructed the Citrus sinensis annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.

  17. Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology.

    Directory of Open Access Journals (Sweden)

    Paolo Fontana

    Full Text Available BACKGROUND: Large-scale sequencing projects have now become routine lab practice and this has led to the development of a new generation of tools involving function prediction methods, bringing the latter back to the fore. The advent of Gene Ontology, with its structured vocabulary and paradigm, has provided computational biologists with an appropriate means for this task. METHODOLOGY: We present here a novel method called ARGOT (Annotation Retrieval of Gene Ontology Terms that is able to process quickly thousands of sequences for functional inference. The tool exploits for the first time an integrated approach which combines clustering of GO terms, based on their semantic similarities, with a weighting scheme which assesses retrieved hits sharing a certain number of biological features with the sequence to be annotated. These hits may be obtained by different methods and in this work we have based ARGOT processing on BLAST results. CONCLUSIONS: The extensive benchmark involved 10,000 protein sequences, the complete S. cerevisiae genome and a small subset of proteins for purposes of comparison with other available tools. The algorithm was proven to outperform existing methods and to be suitable for function prediction of single proteins due to its high degree of sensitivity, specificity and coverage.

  18. Citrus sinensis annotation project (CAP: a comprehensive database for sweet orange genome.

    Directory of Open Access Journals (Sweden)

    Jia Wang

    Full Text Available Citrus is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the Citrus production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. Valencia, and constructed the Citrus sinensis annotation project (CAP to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates ab initio gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at http://citrus.hzau.edu.cn/.

  19. Report on the 2011 Critical Assessment of Function Annotation (CAFA) meeting

    Energy Technology Data Exchange (ETDEWEB)

    Friedberg, Iddo [Miami Univ., Oxford, OH (United States)

    2015-01-21

    The Critical Assessment of Function Annotation meeting was held July 14-15, 2011 at the Austria Conference Center in Vienna, Austria. There were 73 registered delegates at the meeting. We thank the DOE for this award. It helped us organize and support a scientific meeting AFP 2011 as a special interest group (SIG) meeting associated with the ISMB 2011 conference. The conference was held in Vienna, Austria, in July 2011. The AFP SIG was held on July 15-16, 2011 (immediately preceding the conference). The meeting consisted of two components, the first being a series of talks (invited and contributed) and discussion sections dedicated to protein function research, with an emphasis on the theory and practice of computational methods utilized in functional annotation. The second component provided a large-scale assessment of computational methods through participation in the Critical Assessment of Functional Annotation (CAFA). The meeting was exciting and, based on feedback, quite successful. There were 73 registered participants. The schedule was only slightly different from the one proposed, due to two cancellations. Dr. Olga Troyanskaya has canceled and we invited Dr. David Jones instead. Similarly, instead of Dr. Richard Roberts, Dr. Simon Kasif gave a closing keynote. The remaining invited speakers were Janet Thornton (EBI) and Amos Bairoch (University of Geneva).

  20. Assessment of disease named entity recognition on a corpus of annotated sentences

    Directory of Open Access Journals (Sweden)

    Berlanga Rafael

    2008-04-01

    Full Text Available Abstract Background In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs and gene ontology terms (GO terms. Other semantic types like diseases have not received the same level of attention. Different solutions have been proposed to identify disease named entities in the scientific literature. While matching the terminology with language patterns suffers from low recall (e.g., Whatizit other solutions make use of morpho-syntactic features to better cover the full scope of terminological variability (e.g., MetaMap. Currently, MetaMap that is provided from the National Library of Medicine (NLM is the state of the art solution for the annotation of concepts from UMLS (Unified Medical Language System in the literature. Nonetheless, its performance has not yet been assessed on an annotated corpus. In addition, little effort has been invested so far to generate an annotated dataset that links disease entities in text to disease entries in a database, thesaurus or ontology and that could serve as a gold standard to benchmark text mining solutions. Results As part of our research work, we have taken a corpus that has been delivered in the past for the identification of associations of genes to diseases based on the UMLS Metathesaurus and we have reprocessed and re-annotated the corpus. We have gathered annotations for disease entities from two curators, analyzed their disagreement (0.51 in the kappa-statistic and composed a single annotated corpus for public use. Thereafter, three solutions for disease named entity recognition including MetaMap have been applied to the corpus to automatically annotate it with UMLS Metathesaurus concepts. The resulting annotations have been benchmarked to compare their performance. Conclusions The annotated corpus is publicly available at ftp://ftp.ebi.ac.uk/pub/software/textmining/corpora/diseases and can serve as

  1. Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction.

    Science.gov (United States)

    Névéol, Aurélie; Islamaj Doğan, Rezarta; Lu, Zhiyong

    2011-04-01

    Information processing algorithms require significant amounts of annotated data for training and testing. The availability of such data is often hindered by the complexity and high cost of production. In this paper, we investigate the benefits of a state-of-the-art tool to help with the semantic annotation of a large set of biomedical queries. Seven annotators were recruited to annotate a set of 10,000 PubMed® queries with 16 biomedical and bibliographic categories. About half of the queries were annotated from scratch, while the other half were automatically pre-annotated and manually corrected. The impact of the automatic pre-annotations was assessed on several aspects of the task: time, number of actions, annotator satisfaction, inter-annotator agreement, quality and number of the resulting annotations. The analysis of annotation results showed that the number of required hand annotations is 28.9% less when using pre-annotated results from automatic tools. As a result, the overall annotation time was substantially lower when pre-annotations were used, while inter-annotator agreement was significantly higher. In addition, there was no statistically significant difference in the semantic distribution or number of annotations produced when pre-annotations were used. The annotated query corpus is freely available to the research community. This study shows that automatic pre-annotations are found helpful by most annotators. Our experience suggests using an automatic tool to assist large-scale manual annotation projects. This helps speed-up the annotation time and improve annotation consistency while maintaining high quality of the final annotations.

  2. Quality assessment of digital annotated ECG data from clinical trials by the FDA ECG Warehouse.

    Science.gov (United States)

    Sarapa, Nenad

    2007-09-01

    The FDA mandates that digital electrocardiograms (ECGs) from 'thorough' QTc trials be submitted into the ECG Warehouse in Health Level 7 extended markup language format with annotated onset and offset points of waveforms. The FDA did not disclose the exact Warehouse metrics and minimal acceptable quality standards. The author describes the Warehouse scoring algorithms and metrics used by FDA, points out ways to improve FDA review and suggests Warehouse benefits for pharmaceutical sponsors. The Warehouse ranks individual ECGs according to their score for each quality metric and produces histogram distributions with Warehouse-specific thresholds that identify ECGs of questionable quality. Automatic Warehouse algorithms assess the quality of QT annotation and duration of manual QT measurement by the central ECG laboratory.

  3. Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

    Directory of Open Access Journals (Sweden)

    Doran Anthony G

    2013-02-01

    Full Text Available Abstract Background Single nucleotide polymorphisms (SNPs are the most abundant genetic variant found in vertebrates and invertebrates. SNP discovery has become a highly automated, robust and relatively inexpensive process allowing the identification of many thousands of mutations for model and non-model organisms. Annotating large numbers of SNPs can be a difficult and complex process. Many tools available are optimised for use with organisms densely sampled for SNPs, such as humans. There are currently few tools available that are species non-specific or support non-model organism data. Results Here we present SNPdat, a high throughput analysis tool that can provide a comprehensive annotation of both novel and known SNPs for any organism with a draft sequence and annotation. Using a dataset of 4,566 SNPs identified in cattle using high-throughput DNA sequencing we demonstrate the annotations performed and the statistics that can be generated by SNPdat. Conclusions SNPdat provides users with a simple tool for annotation of genomes that are either not supported by other tools or have a small number of annotated SNPs available. SNPdat can also be used to analyse datasets from organisms which are densely sampled for SNPs. As a command line tool it can easily be incorporated into existing SNP discovery pipelines and fills a niche for analyses involving non-model organisms that are not supported by many available SNP annotation tools. SNPdat will be of great interest to scientists involved in SNP discovery and analysis projects, particularly those with limited bioinformatics experience.

  4. Rapid Building Assessment Project

    Science.gov (United States)

    2014-05-01

    U.S. Department of Energy DPW OMD Directorate of Public Works Operations Maintenance Division ECM energy conservation measure EEB Hub Energy... EEB Hub). 5 For this project, FirstFuel worked with 11 DoD installations across the country to identify buildings for remote audit

  5. An Introduction to Genome Annotation.

    Science.gov (United States)

    Campbell, Michael S; Yandell, Mark

    2015-12-17

    Genome projects have evolved from large international undertakings to tractable endeavors for a single lab. Accurate genome annotation is critical for successful genomic, genetic, and molecular biology experiments. These annotations can be generated using a number of approaches and available software tools. This unit describes methods for genome annotation and a number of software tools commonly used in gene annotation.

  6. Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.

    Science.gov (United States)

    Shameer, Khader; Tripathi, Lokesh P; Kalari, Krishna R; Dudley, Joel T; Sowdhamini, Ramanathan

    2016-09-01

    Accurate assessment of genetic variation in human DNA sequencing studies remains a nontrivial challenge in clinical genomics and genome informatics. Ascribing functional roles and/or clinical significances to single nucleotide variants identified from a next-generation sequencing study is an important step in genome interpretation. Experimental characterization of all the observed functional variants is yet impractical; thus, the prediction of functional and/or regulatory impacts of the various mutations using in silico approaches is an important step toward the identification of functionally significant or clinically actionable variants. The relationships between genotypes and the expressed phenotypes are multilayered and biologically complex; such relationships present numerous challenges and at the same time offer various opportunities for the design of in silico variant assessment strategies. Over the past decade, many bioinformatics algorithms have been developed to predict functional consequences of single nucleotide variants in the protein coding regions. In this review, we provide an overview of the bioinformatics resources for the prediction, annotation and visualization of coding single nucleotide variants. We discuss the currently available approaches and major challenges from the perspective of protein sequence, structure, function and interactions that require consideration when interpreting the impact of putatively functional variants. We also discuss the relevance of incorporating integrated workflows for predicting the biomedical impact of the functionally important variations encoded in a genome, exome or transcriptome. Finally, we propose a framework to classify variant assessment approaches and strategies for incorporation of variant assessment within electronic health records.

  7. Annotated English

    CERN Document Server

    Hernandez-Orallo, Jose

    2010-01-01

    This document presents Annotated English, a system of diacritical symbols which turns English pronunciation into a precise and unambiguous process. The annotations are defined and located in such a way that the original English text is not altered (not even a letter), thus allowing for a consistent reading and learning of the English language with and without annotations. The annotations are based on a set of general rules that make the frequency of annotations not dramatically high. This makes the reader easily associate annotations with exceptions, and makes it possible to shape, internalise and consolidate some rules for the English language which otherwise are weakened by the enormous amount of exceptions in English pronunciation. The advantages of this annotation system are manifold. Any existing text can be annotated without a significant increase in size. This means that we can get an annotated version of any document or book with the same number of pages and fontsize. Since no letter is affected, the ...

  8. Multi-annotation discursive de corpus écrit

    OpenAIRE

    Péry-Woodley, Marie-Paule

    2011-01-01

    National audience; On the basis of the experience acquired in the course of the ANNODIS project, the following questions are discussed: - what is the annotation campaign for? building an annotated " reference corpus" vs. annotation as an experiment; - defining annotation tasks. Naïve vs. expert annotation; - the annotation manual : from linguistic model to annotation protocol; - automatic pre-processing vs. manual annotation. Segmentation, tagging and mark-ups: steps in corpus preparation; - ...

  9. Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches.

    Directory of Open Access Journals (Sweden)

    Fumio Matsuda

    Full Text Available BACKGROUND: In metabolomics researches using mass spectrometry (MS, systematic searching of high-resolution mass data against compound databases is often the first step of metabolite annotation to determine elemental compositions possessing similar theoretical mass numbers. However, incorrect hits derived from errors in mass analyses will be included in the results of elemental composition searches. To assess the quality of peak annotation information, a novel methodology for false discovery rates (FDR evaluation is presented in this study. Based on the FDR analyses, several aspects of an elemental composition search, including setting a threshold, estimating FDR, and the types of elemental composition databases most reliable for searching are discussed. METHODOLOGY/PRINCIPAL FINDINGS: The FDR can be determined from one measured value (i.e., the hit rate for search queries and four parameters determined by Monte Carlo simulation. The results indicate that relatively high FDR values (30-50% were obtained when searching time-of-flight (TOF/MS data using the KNApSAcK and KEGG databases. In addition, searches against large all-in-one databases (e.g., PubChem always produced unacceptable results (FDR >70%. The estimated FDRs suggest that the quality of search results can be improved not only by performing more accurate mass analysis but also by modifying the properties of the compound database. A theoretical analysis indicates that FDR could be improved by using compound database with smaller but higher completeness entries. CONCLUSIONS/SIGNIFICANCE: High accuracy mass analysis, such as Fourier transform (FT-MS, is needed for reliable annotation (FDR <10%. In addition, a small, customized compound database is preferable for high-quality annotation of metabolome data.

  10. Annotated bibliography traceability

    NARCIS (Netherlands)

    Narain, G.

    2006-01-01

    This annotated bibliography contains summaries of articles and chapters of books, which are relevant to traceability. After each summary there is a part about the relevancy of the paper for the LEI project. The aim of the LEI-project is to gain insight in several aspects of traceability in order to

  11. Environmental assessment: The Eden project

    Science.gov (United States)

    Roza, Christodoulaki

    Non domestic buildings account for about one-sixth of the U.K.'s entire C02 emissions and one-third of the building related ones 2 . Their proportion of energy consumption, particularly electricity, has also been growing 2 . New buildings are not necessarily better, with energy use often proving to be much higher than their designers anticipated 2 . Annual C02 emissions of two- and sometimes three- times design expectations are far from unusual, leaving a massive credibility gap 2 . These and other global environmental and human health related concerns have motivated an increasing number of designers, developers and building users to pursue more environmentally sustainable designs and construction strategies 5 . However, these buildings can be difficult to evaluate, since they are large in scale, complex in materials and function and temporally dynamic due to limited service life of building components and changing user requirements 5 . All of these factors make environmental assessment of the buildings challenging. Previous Post Occupancy Review of Buildings and their Engineering (PROBE) building investigations have uncovered serious shortcomings in facilities management, or at least mismatches between a building's management needs and the ability of the occupiers to provide the right level of management 1 . Consequently, large differences between energy performance expectations and outcomes can occur virtually unnoticed, while designers continue to repeat flawed descriptions 2 . This investigation attempts to evaluate the building's operation and to help achieving demonstrable improvements in terms of energy efficiency and occupant satisfaction. The scope of this study is to evaluate the actual environmental performance of a building notable for its advanced design. The Education Resource Centre at the Eden Project was selected to compare design expectations with post occupancy performance. This report contains a small-scale survey of user satisfaction with the

  12. Environmental Assessment Lakeview Geothermal Project

    Energy Technology Data Exchange (ETDEWEB)

    Treis, Tania [Southern Oregon Economic Development Department, Medford, OR (United States)

    2012-04-30

    The Town of Lakeview is proposing to construct and operate a geothermal direct use district heating system in Lakeview, Oregon. The proposed project would be in Lake County, Oregon, within the Lakeview Known Geothermal Resources Area (KGRA). The proposed project includes the following elements: Drilling, testing, and completion of a new production well and geothermal water injection well; construction and operation of a geothermal production fluid pipeline from the well pad to various Town buildings (i.e., local schools, hospital, and Lake County Industrial Park) and back to a geothermal water injection well. This EA describes the proposed project, the alternatives considered, and presents the environmental analysis pursuant to the National Environmental Policy Act. The project would not result in adverse effects to the environment with the implementation of environmental protection measures.

  13. Projects. Assessment Resource Kit(ARK).

    Science.gov (United States)

    Forster, Margaret; Masters, Geoff

    Projects are extended pieces of work completed over a period of time. They provide contexts for the assessment of general skills, as well as the ability to apply subject-specific knowledge and skills. Some of the general skills that projects demonstrate are collecting and organizing information, solving problems, working in a group, and…

  14. Automated Autonomy Assessment System Project

    Data.gov (United States)

    National Aeronautics and Space Administration — NASA has expressed the need to assess crew autonomy relative to performance and evaluate an optimal level of autonomy that maximizes individual and team performance....

  15. Mexico Wind Resource Assessment Project

    Energy Technology Data Exchange (ETDEWEB)

    Schwartz, M.N.; Elliott, D.L.

    1995-05-01

    A preliminary wind energy resource assessment of Mexico that produced wind resource maps for both utility-scale and rural applications was undertaken as part of the Mexico-U.S. Renewable Energy Cooperation Program. This activity has provided valuable information needed to facilitate the commercialization of small wind turbines and windfarms in Mexico and to lay the groundwork for subsequent wind resource activities. A surface meteorological data set of hourly data in digital form was utilized to prepare a more detailed and accurate wind resource assessment of Mexico than otherwise would have been possible. Software was developed to perform the first ever detailed analysis of the wind characteristics data for over 150 stations in Mexico. The hourly data set was augmented with information from weather balloons (upper-air data), ship wind data from coastal areas, and summarized wind data from sources in Mexico. The various data were carefully evaluated for their usefulness in preparing the wind resource assessment. The preliminary assessment has identified many areas of good-to-excellent wind resource potential and shows that the wind resource in Mexico is considerably greater than shown in previous surveys.

  16. Human Genome Annotation

    Science.gov (United States)

    Gerstein, Mark

    A central problem for 21st century science is annotating the human genome and making this annotation useful for the interpretation of personal genomes. My talk will focus on annotating the 99% of the genome that does not code for canonical genes, concentrating on intergenic features such as structural variants (SVs), pseudogenes (protein fossils), binding sites, and novel transcribed RNAs (ncRNAs). In particular, I will describe how we identify regulatory sites and variable blocks (SVs) based on processing next-generation sequencing experiments. I will further explain how we cluster together groups of sites to create larger annotations. Next, I will discuss a comprehensive pseudogene identification pipeline, which has enabled us to identify >10K pseudogenes in the genome and analyze their distribution with respect to age, protein family, and chromosomal location. Throughout, I will try to introduce some of the computational algorithms and approaches that are required for genome annotation. Much of this work has been carried out in the framework of the ENCODE, modENCODE, and 1000 genomes projects.

  17. River Protection Project information systems assessment

    Energy Technology Data Exchange (ETDEWEB)

    JOHNSON, A.L.

    1999-07-28

    The Information Systems Assessment Report documents the results from assessing the Project Hanford Management Contract (PHMC) Hanford Data Integrator 2000 (HANDI 2000) system, Business Management System (BMS) and Work Management System phases (WMS), with respect to the System Engineering Capability Assessment Model (CAM). The assessment was performed in accordance with the expectations stated in the fiscal year (FY) 1999 Performance Agreement 7.1.1, item (2) which reads, ''Provide an assessment report on the selected Integrated Information System by July 31, 1999.'' This report assesses the BMS and WMS as implemented and planned for the River Protection Project (RPP). The systems implementation is being performed under the PHMC HANDI 2000 information system project. The project began in FY 1998 with the BMS, proceeded in FY 1999 with the Master Equipment List portion of the WMS, and will continue the WMS implementation as funding provides. This report constitutes an interim quality assessment providing information necessary for planning RPP's information systems activities. To avoid confusion, HANDI 2000 will be used when referring to the entire system, encompassing both the BMS and WMS. A graphical depiction of the system is shown in Figure 2-1 of this report.

  18. Project Assessment Skills Web Application

    Science.gov (United States)

    Goff, Samuel J.

    2013-01-01

    The purpose of this project is to utilize Ruby on Rails to create a web application that will replace a spreadsheet keeping track of training courses and tasks. The goal is to create a fast and easy to use web application that will allow users to track progress on training courses. This application will allow users to update and keep track of all of the training required of them. The training courses will be organized by group and by user, making readability easier. This will also allow group leads and administrators to get a sense of how everyone is progressing in training. Currently, updating and finding information from this spreadsheet is a long and tedious task. By upgrading to a web application, finding and updating information will be easier than ever as well as adding new training courses and tasks. Accessing this data will be much easier in that users just have to go to a website and log in with NDC credentials rather than request the relevant spreadsheet from the holder. In addition to Ruby on Rails, I will be using JavaScript, CSS, and jQuery to help add functionality and ease of use to my web application. This web application will include a number of features that will help update and track progress on training. For example, one feature will be to track progress of a whole group of users to be able to see how the group as a whole is progressing. Another feature will be to assign tasks to either a user or a group of users. All of these together will create a user friendly and functional web application.

  19. Radiological impact assessment within the IAEA Arctic Assessment Project (IASAP)

    DEFF Research Database (Denmark)

    Scott, E.M.; Gurbutt, P.; Harmes, I.;

    1998-01-01

    As part of the International Arctic Seas Assessment Project (IASAP) of IAEA, a working group was created to model the dispersal and transfer of radionuclides released from radioactive waste disposed of in the Kara Sea and bays of Novaya Zemlya and to assess the radiological impact. Existing models...

  20. Assessing and Evaluating Department of Defense Efforts to Inform, Influence, and Persuade: An Annotated Reading List

    Science.gov (United States)

    2015-01-01

    10 Assessment in Advertising , Marketing, and Public Relations...implementation of diverse efforts. Assessment in Advertising , Marketing, and Public Relations Frankly, much of the instructional material on measurement...of content analysis: clip count- ing, circulation and readership analysis, advertising value equivalence, simple content analysis, message analysis

  1. National Assessment of Oil and Gas Project - Yukon Flats Assessment Area (002) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  2. UN-aided Project Passing Final Assessment

    Institute of Scientific and Technical Information of China (English)

    Wang Anfang

    1995-01-01

    @@ A number of projects funded by the United Nations Development Program passed final examination and assessment in April 1994.They are the well-completion technical center project of the Southwest Petroleum Institute with a fund of 1.27 million US dollars and the acidizing and fracturing technical service center of Wanzhuang Branch Research Institute of Petroleum Exploration and Development (RIPED) with a fund of 1.41 million US dollars.

  3. Tidd PFBC Demonstration Project, A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2001-08-31

    The Clean Coal Technology (CCT) Demonstration Program is a government and industry co-funded technology development effort to demonstrate a new generation of innovative coal utilization processes. One goal of the program is to furnish the energy marketplace with a variety of energy efficient, environmentally superior coal-based technologies. Demonstration projects seek to establish the commercial feasibility of the most promising coal technologies that have proceeded beyond the proof-of-concept stage. This report is a post-project assessment of the DOE CCT Demonstration Program, the Tidd PFBC Demonstration Project. A major objective of the CCT Program is to provide the technical data necessary for the private sector to proceed confidently with the commercial replication of the demonstrated technologies. An essential element of meeting this goal is the dissemination of results from the demonstration projects. This post-project assessment (PPA) report is an independent DOE appraisal of the successes that the completed project had in achieving its objectives and aiding in the commercialization of the demonstrated technology. The report also provides an assessment of the expected technical, environmental, and economic performance of the commercial version of the technology, as well as an analysis of the commercial market.

  4. Subjective risk assessment for planning conservation projects

    Science.gov (United States)

    Game, Edward T.; Fitzsimons, James A.; Lipsett-Moore, Geoff; McDonald-Madden, Eve

    2013-12-01

    Conservation projects occur under many types of uncertainty. Where this uncertainty can affect achievement of a project’s objectives, there is risk. Understanding risks to project success should influence a range of strategic and tactical decisions in conservation, and yet, formal risk assessment rarely features in the guidance or practice of conservation planning. We describe how subjective risk analysis tools can be framed to facilitate the rapid identification and assessment of risks to conservation projects, and how this information should influence conservation planning. Our approach is illustrated with an assessment of risks to conservation success as part of a conservation plan for the work of The Nature Conservancy in northern Australia. Risks can be both internal and external to a project, and occur across environmental, social, economic and political systems. Based on the relative importance of a risk and the level of certainty in its assessment we propose a series of appropriate, project level responses including research, monitoring, and active amelioration. Explicit identification, prioritization, and where possible, management of risks are important elements of using conservation resources in an informed and accountable manner.

  5. Peer Assessment in Engineering Group Projects

    DEFF Research Database (Denmark)

    Triantafyllou, Eva; Timcenko, Olga

    2014-01-01

    Peer review has proved to be beneficial in project-based environments by involving students in the process and encouraging them to take ownership of their learning. This article reviews how peer assessment has been employed within group work for different engineering programs. Since the administr......Peer review has proved to be beneficial in project-based environments by involving students in the process and encouraging them to take ownership of their learning. This article reviews how peer assessment has been employed within group work for different engineering programs. Since...

  6. Annotated bibliography: hazard assessments for the geologic isolation of nuclear wastes. Final report. Center for Resource and Environmental Systems Studies report No. 41

    Energy Technology Data Exchange (ETDEWEB)

    Suta, B.E.; Mara, S.J.; Radding, S.B.; Weisbecker, L.W.

    1977-11-01

    This report presents an annotated bibliography of risk assessments that are pertinent to constructing, operating, and decommissioning a federal repository for the underground storage of radioactive waste. This might be considered as a first phase in an assessment of the risks associated with radioactive waste storage. Only those documents judged to be the more pertinent are abstracted. The abstracts are grouped under 13 classifications. A subject and author index is provided.

  7. Project Assessment Framework through Design (PAFTD) - A Project Assessment Framework in Support of Strategic Decision Making

    Science.gov (United States)

    Depenbrock, Brett T.; Balint, Tibor S.; Sheehy, Jeffrey A.

    2014-01-01

    Research and development organizations that push the innovation edge of technology frequently encounter challenges when attempting to identify an investment strategy and to accurately forecast the cost and schedule performance of selected projects. Fast moving and complex environments require managers to quickly analyze and diagnose the value of returns on investment versus allocated resources. Our Project Assessment Framework through Design (PAFTD) tool facilitates decision making for NASA senior leadership to enable more strategic and consistent technology development investment analysis, beginning at implementation and continuing through the project life cycle. The framework takes an integrated approach by leveraging design principles of useability, feasibility, and viability and aligns them with methods employed by NASA's Independent Program Assessment Office for project performance assessment. The need exists to periodically revisit the justification and prioritization of technology development investments as changes occur over project life cycles. The framework informs management rapidly and comprehensively about diagnosed internal and external root causes of project performance.

  8. ParsEval: parallel comparison and analysis of gene structure annotations

    Directory of Open Access Journals (Sweden)

    Standage Daniel S

    2012-08-01

    Full Text Available Abstract Background Accurate gene structure annotation is a fundamental but somewhat elusive goal of genome projects, as witnessed by the fact that (model genomes typically undergo several cycles of re-annotation. In many cases, it is not only different versions of annotations that need to be compared but also different sources of annotation of the same genome, derived from distinct gene prediction workflows. Such comparisons are of interest to annotation providers, prediction software developers, and end-users, who all need to assess what is common and what is different among distinct annotation sources. We developed ParsEval, a software application for pairwise comparison of sets of gene structure annotations. ParsEval calculates several statistics that highlight the similarities and differences between the two sets of annotations provided. These statistics are presented in an aggregate summary report, with additional details provided as individual reports specific to non-overlapping, gene-model-centric genomic loci. Genome browser styled graphics embedded in these reports help visualize the genomic context of the annotations. Output from ParsEval is both easily read and parsed, enabling systematic identification of problematic gene models for subsequent focused analysis. Results ParsEval is capable of analyzing annotations for large eukaryotic genomes on typical desktop or laptop hardware. In comparison to existing methods, ParsEval exhibits a considerable performance improvement, both in terms of runtime and memory consumption. Reports from ParsEval can provide relevant biological insights into the gene structure annotations being compared. Conclusions Implemented in C, ParsEval provides the quickest and most feature-rich solution for genome annotation comparison to date. The source code is freely available (under an ISC license at http://parseval.sourceforge.net/.

  9. JISC funded Kaptur project environmental assessment report

    OpenAIRE

    Garrett, Leigh; Gramstadt, Marie-Therese; Burgess, Robin; Murtagh, John; Spalding, Mary-Anne; Nadim, Tahani

    2012-01-01

    The overall objective of the JISC funded Kaptur project (October 2011 - March 2013) is to discover, create and pilot a sectoral model of best practice in the management of research data in the visual arts. This report outlines findings from the first workpackage, environmental assessment, based on the following research question: What is the nature of visual arts research data? Appendix A provides detail on the methodology; data was gathered from a literature review and 16 face-to-face interv...

  10. Assessment and self-assessment of project manager

    Directory of Open Access Journals (Sweden)

    Ion VASILESCU

    2009-12-01

    Full Text Available The activities for projects preparation and progress are run within a hard and hostile environment, requiring the project management to perform an assessment/selfassessment before getting involved in activities specific to investment and production processes. The paper presents a series of criteria that must be taken into account, such as: the health degree and the efficiency, social obligations towards family (parents, children, relatives, etc., the training degree within business, efficiency within run activities, past incisiveness and initiatives, capacity to plan an action, to lead and make decisions: flexibility degree, accommodation to new situations, perseverance degree and complex approach of the business, capacity to observe the principles of business ethics.

  11. Healy Clean Coal Project: A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2003-09-01

    The goal of the U.S. Department of Energy's (DOE) Clean Coal Technology (CCT) Program is to provide the energy marketplace with advanced, more efficient, and environmentally responsible coal utilization options by conducting demonstrations of new technologies. These demonstration projects are intended to establish the commercial feasibility of promising advanced coal technologies that have been developed to a level at which they are ready for demonstration testing under commercial conditions. This document serves as a DOE post-project assessment (PPA) of the Healy Clean Coal Project (HCCP), selected under Round III of the CCT Program, and described in a Report to Congress (U.S. Department of Energy, 1991). The desire to demonstrate an innovative power plant that integrates an advanced slagging combustor, a heat recovery system, and both high- and low-temperature emissions control processes prompted the Alaska Industrial Development and Export Authority (AIDEA) to submit a proposal for this project. In April 1991, AIDEA entered into a cooperative agreement with DOE to conduct this project. Other team members included Golden Valley Electric Association (GVEA), host and operator; Usibelli Coal Mine, Inc., coal supplier; TRW, Inc., Space & Technology Division, combustor technology provider; Stone & Webster Engineering Corp. (S&W), engineer; Babcock & Wilcox Company (which acquired the assets of Joy Environmental Technologies, Inc.), supplier of the spray dryer absorber technology; and Steigers Corporation, provider of environmental and permitting support. Foster Wheeler Energy Corporation supplied the boiler. GVEA provided oversight of the design and provided operators during demonstration testing. The project was sited adjacent to GVEA's Healy Unit No. 1 in Healy, Alaska. The objective of this CCT project was to demonstrate the ability of the TRW Clean Coal Combustion System to operate on a blend of run-of-mine (ROM) coal and waste coal, while meeting strict

  12. Solmap: Project In India's Solar Resource Assessment

    Directory of Open Access Journals (Sweden)

    Indradip Mitra

    2014-12-01

    Full Text Available India launched Jawaharlal Nehru National Solar Mission in 2009, which aims to set up 20 000 MW of grid connected solar power, besides 2 000 MW equivalent of off-grid applications and cumulative growth of solar thermal collector area to 20 million m2 by 2022. Availability of reliable and accurate solar radiation data is crucial to achieve the targets. As a result of this initiative, Ministry of New and Renewable Energy (MNRE of Government of India (GoI has awarded a project to Centre for Wind Energy Technology (C-WET, Chennai in the year 2011 to set up 51 Solar Radiation Resource Assessment (SRRA stations using the state-of-the-art equipment in various parts of the country, especially the sites with high potential for solar power. The GoI project has synergy with SolMap project, which is implemented by the Deutsche GesellschaftfürInternationaleZusammenarbeit (GIZ in cooperation with the MNRE. SolMap project is contributing to SRRA project in establishing quality checks on the data obtained as per International protocols and helping data processing to generate investment grade data. The paper highlights the details of SRRA stations and an attempt has been made to present some of the important results of quality control and data analysis with respect to GHI and DNI. While our analysis of the data over one year finds that intensity and profile of the insolation are not uniform across the geographic regions, the variability in DNI is particularly high. Strong influence of monsoon is also identified. SRRA infrastructure aims to develop investment grade solar radiation resource information to assist project activities under the National Solar Mission of India.

  13. Klickitat Cogeneration Project : Final Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration; Klickitat Energy Partners

    1994-09-01

    To meet BPA`s contractual obligation to supply electrical power to its customers, BPA proposes to acquire power generated by Klickitat Cogeneration Project. BPA has prepared an environmental assessment evaluating the proposed project. Based on the EA analysis, BPA`s proposed action is not a major Federal action significantly affecting the quality of the human environment within the meaning of the National Environmental Policy Act of 1969 for the following reasons: (1)it will not have a significant impact land use, upland vegetation, wetlands, water quality, geology, soils, public health and safety, visual quality, historical and cultural resources, recreation and socioeconomics, and (2) impacts to fisheries, wildlife resources, air quality, and noise will be temporary, minor, or sufficiently offset by mitigation. Therefore, the preparation of an environmental impact statement is not required and BPA is issuing this FONSI (Finding of No Significant Impact).

  14. What a catch! traits that define good annotators.

    Science.gov (United States)

    Forbush, Tyler B; Shen, Shuying; South, Brett R; Duvalla, Scott L

    2013-01-01

    Human annotation and chart review is an important process in biomedical informatics research, but which humans are best suited for the job? Domain expertise, such as medical or linguistic knowledge is desirable, but other factors may be equally important. The University of Utah has a group of 20+ reviewers with backgrounds in medicine and linguistics, and 10 key traits have surfaced in those best able to annotate quickly and with high quality. To identify reviewers with these key traits, we created a hiring process that includes interviewing candidates, testing their medical and linguistic knowledge, and having them complete an annotation exercise on realistic medical text. Each step is designed to assess the key traits and allow the investigator to choose the skill set required for each project.

  15. An annotation based approach to support design communication

    CERN Document Server

    Hisarciklilar, Onur

    2007-01-01

    The aim of this paper is to propose an approach based on the concept of annotation for supporting design communication. In this paper, we describe a co-operative design case study where we analyse some annotation practices, mainly focused on design minutes recorded during project reviews. We point out specific requirements concerning annotation needs. Based on these requirements, we propose an annotation model, inspired from the Speech Act Theory (SAT) to support communication in a 3D digital environment. We define two types of annotations in the engineering design context, locutionary and illocutionary annotations. The annotations we describe in this paper are materialised by a set of digital artefacts, which have a semantic dimension allowing express/record elements of technical justifications, traces of contradictory debates, etc. In this paper, we first clarify the semantic annotation concept, and we define general properties of annotations in the engineering design context, and the role of annotations in...

  16. Regional Assessment of Supplementation Project. Status report

    Energy Technology Data Exchange (ETDEWEB)

    1991-10-01

    The Fish and Wildlife Program of the Northwest Power Planning Council (NPPC) prescribes several approaches to achieve its goal of doubling the salmon and steelhead runs of the Columbia River. Among those approaches are habitat restoration, improvements in adult and juvenile passage at dams and artificial propagation. Supplementation will be a major part of the new hatchery programs. The purpose of the Regional Assessment of Supplementation Project (RASP) is to provide an overview of ongoing and planned supplementation activities, to construct a conceptual framework and model for evaluating the potential benefits and risks of supplementation and to develop a plan for better regional coordination of research and monitoring and evaluation of supplementation. RASP has completed its first year of work. Progress toward meeting the first year`s objectives and recommendations for future tasks are contained in this report.

  17. Improvement treatments and criteria assessing banks the energy efficiency projects

    Directory of Open Access Journals (Sweden)

    Ryzhkova Anna Vladimirovna

    2013-05-01

    Full Text Available Stimulate bank lending to businesses for energy efficiency projects is possible by increasing the accuracy of the valuation the project and the effect of its implementation. The paper presents a sequence of procedures and appropriate assessment criteria for energy efficiency projects, which will increase the chances of success of the investment project and to ensure the financial stability of the bank.

  18. Fuzzy Assessment Method and Its Application to Selecting Project Managers

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Open competition is a new form of the assessment of candidates and selection of project managers. This has many merits compared to the traditional administrative method of appointment. This article introduces a method of fuzzy assessment of project manager candidates. Fuzzy assessment unifies objective qualitative and quantitative appraisal and can be used for improving decision-making in the selection process.

  19. National Assessment of Oil and Gas Project - Denver Basin Province (039) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  20. USGS National Assessment of Oil and Gas Project - Cherokee Platform Province Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  1. USGS National Assessment of Oil and Gas Project - Uinta-Piceance Province, Mancos Formation Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  2. USGS National Assessment of Oil and Gas Project - Uteland Butte Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  3. National Assessment of Oil and Gas Project - Uinta-Piceance Province (020) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  4. USGS National Assessment of Oil and Gas Project - Unconventional Assessment Units from 2000 to 2011

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  5. National Assessment of Oil and Gas Project - Paradox Basin (021) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  6. National Assessment of Oil and Gas Project - Black Warrior Province (065) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  7. National Assessment of Oil and Gas Project - Williston Basin Province (031) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  8. National Assessment of Oil and Gas Project - Utica Shale Unconventional Assessment

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  9. National Assessment of Oil and Gas Project - Florida Peninsula Province (050) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  10. National Assessment of Oil and Gas Project - Montana Thrust Belt Province (027) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  11. National Assessment of Oil and Gas Project - Michigan Basin Province (063) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  12. National Assessment of Oil and Gas Project - Illinois Basin Province (064) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  13. National Assessment of Oil and Gas Project - Powder River Basin Province (033) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  14. National Assessment of Oil and Gas Project - Southwestern Wyoming Province (037) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  15. National Assessment of Oil and Gas Project - Wyoming Thrust Belt Province (036) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  16. National Assessment of Oil and Gas Project - Western Oregon-Washington Province (004) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  17. National Assessment of Oil and Gas Project - San Joaquin Basin Province (010) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  18. National Assessment of Oil and Gas Project - San Juan Basin Province (022) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  19. National Assessment of Oil and Gas Project Anadarko Basin Province (058) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  20. National Assessment of Oil and Gas Project - Hanna, Laramie, Shirley Basins Province (030) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  1. National Assessment of Oil and Gas Project - Eastern Great Basin (019) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  2. National Assessment of Oil and Gas Project - Cotton Valley Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  3. Assessing the Relationship between Ethical Project Management and Information Technology Project Success

    Science.gov (United States)

    Howell, Byron Winter

    2010-01-01

    The purpose of this quantitative study was to assess the relationship between ethical project management and information technology (IT) project success. The success of IT projects is important for organizational success, but the rate of IT projects is historically low, costing billions of dollars annually. Using four key ethical variables…

  4. Direct functional assessment of the composite phenotype through multivariate projection strategies.

    Science.gov (United States)

    Conesa, Ana; Bro, Rasmus; García-García, Francisco; Prats, José Manuel; Götz, Stefan; Kjeldahl, Karin; Montaner, David; Dopazo, Joaquín

    2008-12-01

    We present a novel approach for the analysis of transcriptomics data that integrates functional annotation of gene sets with expression values in a multivariate fashion, and directly assesses the relation of functional features to a multivariate space of response phenotypical variables. Multivariate projection methods are used to obtain new correlated variables for a set of genes that share a given function. These new functional variables are then related to the response variables of interest. The analysis of the principal directions of the multivariate regression allows for the identification of gene function features correlated with the phenotype. Two different transcriptomics studies are used to illustrate the statistical and interpretative aspects of the methodology. We demonstrate the superiority of the proposed method over equivalent approaches.

  5. Maize microarray annotation database

    Directory of Open Access Journals (Sweden)

    Berger Dave K

    2011-10-01

    Full Text Available Abstract Background Microarray technology has matured over the past fifteen years into a cost-effective solution with established data analysis protocols for global gene expression profiling. The Agilent-016047 maize 44 K microarray was custom-designed from EST sequences, but only reporter sequences with EST accession numbers are publicly available. The following information is lacking: (a reporter - gene model match, (b number of reporters per gene model, (c potential for cross hybridization, (d sense/antisense orientation of reporters, (e position of reporter on B73 genome sequence (for eQTL studies, and (f functional annotations of genes represented by reporters. To address this, we developed a strategy to annotate the Agilent-016047 maize microarray, and built a publicly accessible annotation database. Description Genomic annotation of the 42,034 reporters on the Agilent-016047 maize microarray was based on BLASTN results of the 60-mer reporter sequences and their corresponding ESTs against the maize B73 RefGen v2 "Working Gene Set" (WGS predicted transcripts and the genome sequence. The agreement between the EST, WGS transcript and gDNA BLASTN results were used to assign the reporters into six genomic annotation groups. These annotation groups were: (i "annotation by sense gene model" (23,668 reporters, (ii "annotation by antisense gene model" (4,330; (iii "annotation by gDNA" without a WGS transcript hit (1,549; (iv "annotation by EST", in which case the EST from which the reporter was designed, but not the reporter itself, has a WGS transcript hit (3,390; (v "ambiguous annotation" (2,608; and (vi "inconclusive annotation" (6,489. Functional annotations of reporters were obtained by BLASTX and Blast2GO analysis of corresponding WGS transcripts against GenBank. The annotations are available in the Maize Microarray Annotation Database http://MaizeArrayAnnot.bi.up.ac.za/, as well as through a GBrowse annotation file that can be uploaded to

  6. Multiple Intelligences: Curriculum and Assessment Project. Final Report

    Science.gov (United States)

    Hyland, Aine, Ed.

    2011-01-01

    The "Multiple Intelligences, Curriculum and Assessment Project" at University College Cork was a collaborative project carried out between 1995 and 1999. The key research question focused on whether Howard Gardner's theory of Multiple Intelligences could be applied to, and enhance, aspects of curriculum and assessment at primary and second level…

  7. An Outcomes Assessment Project: Basic Writing and Essay Structure

    Science.gov (United States)

    Caldwell, David; DeRusha, Jeanine; Stanton-Hammond, Gail; Straight, Steve; Sullivan, Patrick

    2011-01-01

    In this article, the authors report on an assessment project they recently conducted at their open admissions community college to assess student work at the end of the basic writing sequence. The authors' focus for this project was on the way students used essay structure. They gathered artifacts from students who were deemed "ready" by…

  8. Portfolio Assessment of an Undergraduate Group Project

    Science.gov (United States)

    Kuisma, Raija

    2007-01-01

    Students in the Physiotherapy Programme carried out a group project in their final year of studies. The objectives of the project were that the students learn and appreciate the process and activities involved in research, acquire deeper understanding of a topic in their professional interest, learn to work as a team, manage their own time,…

  9. Spiral and Project-Based Learning with Peer Assessment in a Computer Science Project Management Course

    Science.gov (United States)

    Jaime, Arturo; Blanco, José Miguel; Domínguez, César; Sánchez, Ana; Heras, Jónathan; Usandizaga, Imanol

    2016-01-01

    Different learning methods such as project-based learning, spiral learning and peer assessment have been implemented in science disciplines with different outcomes. This paper presents a proposal for a project management course in the context of a computer science degree. Our proposal combines three well-known methods: project-based learning,…

  10. Semantic annotation of Web data applied to risk in food.

    Science.gov (United States)

    Hignette, Gaëlle; Buche, Patrice; Couvert, Olivier; Dibie-Barthélemy, Juliette; Doussot, David; Haemmerlé, Ollivier; Mettler, Eric; Soler, Lydie

    2008-11-30

    A preliminary step to risk in food assessment is the gathering of experimental data. In the framework of the Sym'Previus project (http://www.symprevius.org), a complete data integration system has been designed, grouping data provided by industrial partners and data extracted from papers published in the main scientific journals of the domain. Those data have been classified by means of a predefined vocabulary, called ontology. Our aim is to complement the database with data extracted from the Web. In the framework of the WebContent project (www.webcontent.fr), we have designed a semi-automatic acquisition tool, called @WEB, which retrieves scientific documents from the Web. During the @WEB process, data tables are extracted from the documents and then annotated with the ontology. We focus on the data tables as they contain, in general, a synthesis of data published in the documents. In this paper, we explain how the columns of the data tables are automatically annotated with data types of the ontology and how the relations represented by the table are recognised. We also give the results of our experimentation to assess the quality of such an annotation.

  11. The Contribution of Project Environmental Assessment to Assessing and Managing Cumulative Effects: Individually and Collectively Insignificant?

    Science.gov (United States)

    Noble, Bram; Liu, Jialang; Hackett, Paul

    2017-04-01

    This paper explores the opportunities and constraints to project-based environmental assessment as a means to support the assessment and management of cumulative environmental effects. A case study of the hydroelectric sector is used to determine whether sufficient information is available over time through project-by-project assessments to support an adequate understanding of cumulative change. Results show inconsistency from one project to the next in terms of the components and indicators assessed, limited transfer of baseline information between project assessments over time, and the same issues and concerns being raised by review panels-even though the projects reviewed are operating in the same watershed and operated by the same proponent. Project environmental assessments must be managed, and coordinated, as part of a larger system of impact assessment, if project-by-project assessments are to provide a meaningful forum for learning and understanding cumulative change. The paper concludes with recommendations for improved project-based assessment practice in support of cumulative effects assessment and management.

  12. Spiral and Project-Based Learning with Peer Assessment in a Computer Science Project Management Course

    Science.gov (United States)

    Jaime, Arturo; Blanco, José Miguel; Domínguez, César; Sánchez, Ana; Heras, Jónathan; Usandizaga, Imanol

    2016-06-01

    Different learning methods such as project-based learning, spiral learning and peer assessment have been implemented in science disciplines with different outcomes. This paper presents a proposal for a project management course in the context of a computer science degree. Our proposal combines three well-known methods: project-based learning, spiral learning and peer assessment. Namely, the course is articulated during a semester through the structured (progressive and incremental) development of a sequence of four projects, whose duration, scope and difficulty of management increase as the student gains theoretical and instrumental knowledge related to planning, monitoring and controlling projects. Moreover, the proposal is complemented using peer assessment. The proposal has already been implemented and validated for the last 3 years in two different universities. In the first year, project-based learning and spiral learning methods were combined. Such a combination was also employed in the other 2 years; but additionally, students had the opportunity to assess projects developed by university partners and by students of the other university. A total of 154 students have participated in the study. We obtain a gain in the quality of the subsequently projects derived from the spiral project-based learning. Moreover, this gain is significantly bigger when peer assessment is introduced. In addition, high-performance students take advantage of peer assessment from the first moment, whereas the improvement in poor-performance students is delayed.

  13. Preliminary assessment of potential CDM early start projects in Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Meyers, S.; Sathaye, J.; Lehman, B.; Schumacher, K.; van Vliet, O.; Moreira, J.R.

    2000-11-01

    The Brazil/US Aspen Global Forum on Climate Change Policies and Programs has facilitated a dialogue between key Brazil and US public and private sector leaders on the subject of the Clean Development Mechanism (CDM). With support from the US government, a cooperative effort between Lawrence Berkeley National Laboratory and the University of Sao Paulo conducted an assessment of a number of projects put forth by Brazilian sponsors. Initially, we gathered information and conducted a screening assessment for ten projects in the energy sector and six projects in the forestry sector. Some of the projects appeared to offer greater potential to be attractive for CDM, or had better information available. We then conducted a more detailed assessment of 12 of these projects, and two other projects that were submitted after the initial screening. An important goal was to assess the potential impact of Certified Emission Reductions (CERs) on the financial performance of projects. With the exception of the two forestry-based fuel displacement projects, the impact of CERs on the internal rate of return (IRR) is fairly small. This is true for both the projects that displace grid electricity and those that displace local (diesel-based) electricity production. The relative effect of CERs is greater for projects whose IRR without CERs is low. CERs have a substantial effect on the IRR of the two short-rotation forestry energy substitution projects. One reason is that the biofuel displaces coke and oil, both of which are carbon-intensive. Another factor is that the product of these projects (charcoal and woodfuel, respectively) is relatively low value, so the revenue from carbon credits has a strong relative impact. CERs also have a substantial effect on the NPV of the carbon sequestration projects. Financial and other barriers pose a challenge for implementation of most of the projects. In most cases, the sponsor lacks sufficient capital, and loans are available only at high interest

  14. Revolutionary Wake Hazard Assessment Tool Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Continuum Dynamics, Inc. (CDI) has developed a Multiple Aircraft Simulation Tool (MAST) that revolutionizes the ability to predict and assess wake interactions...

  15. Using the CAS Standards in Assessment Projects

    Science.gov (United States)

    Dean, Laura A.

    2013-01-01

    This chapter provides an overview of the use of professional standards of practice in assessment and of the Council for the Advancement of Standards in Higher Education (CAS). It outlines a model for conducting program self-studies and discusses the importance of implementing change based on assessment results.

  16. Assessing Projection Bias in Consumers' Food Preferences.

    Directory of Open Access Journals (Sweden)

    Tiziana de-Magistris

    Full Text Available The aim of this study is to test whether projection bias exists in consumers' purchasing decisions for food products. To achieve our aim, we used a non-hypothetical experiment (i.e., experimental auction, where hungry and non-hungry participants were incentivized to reveal their willingness to pay (WTP. The results confirm the existence of projection bias when consumers made their decisions on food products. In particular, projection bias existed because currently hungry participants were willing to pay a higher price premium for cheeses than satiated ones, both in hungry and satiated future states. Moreover, participants overvalued the food product more when they were delivered in the future hungry condition than in the satiated one. Our study provides clear, quantitative and meaningful evidence of projection bias because our findings are based on economic valuation of food preferences. Indeed, the strength of this study is that findings are expressed in terms of willingness to pay which is an interpretable amount of money.

  17. Involving Assessment Buddies in the Assessment of Design Project Work

    Science.gov (United States)

    Osmond, Jane; Clough, Brian

    2012-01-01

    This paper discusses the impact of a specially developed assessment and feedback system implemented within a second year industrial design module at Coventry University, UK. The "Assessment Buddy" system was developed in response to the need for a successful assessment and feedback method that could cope with the complexities of a creative…

  18. Ubiquitous Annotation Systems

    DEFF Research Database (Denmark)

    Hansen, Frank Allan

    2006-01-01

    Ubiquitous annotation systems allow users to annotate physical places, objects, and persons with digital information. Especially in the field of location based information systems much work has been done to implement adaptive and context-aware systems, but few efforts have focused on the general...... requirements for linking information to objects in both physical and digital space. This paper surveys annotation techniques from open hypermedia systems, Web based annotation systems, and mobile and augmented reality systems to illustrate different approaches to four central challenges ubiquitous annotation...... systems have to deal with: anchoring, structuring, presentation, and authoring. Through a number of examples each challenge is discussed and HyCon, a context-aware hypermedia framework developed at the University of Aarhus, Denmark, is used to illustrate an integrated approach to ubiquitous annotations...

  19. Reference Scenario Forecasting: A New Approach to Transport Project Assessment

    DEFF Research Database (Denmark)

    Salling, Kim Bang; Leleur, Steen; Skougaard, Britt Zoëga

    2010-01-01

    forecasting (RSF) frame. The RSF is anchored in the cost-benefit analysis (CBA), thus, it provides decision-makers with a quantitative mean of assessing the transport infrastructure project. First, the RSF method introduces uncertainties within the CBA by applying Optimism Bias uplifts on the preliminary......This paper presents a new approach to transport project assessment in terms of feasibility risk assessment and reference class forecasting. Normally, transport project assessment is based upon a cost-benefit approach where evaluation criteria such as net present values are obtained. Recent research...... distribution functions. The latter have been placed and ultimately simulated on the inaccuracies of determining demand forecasts, i.e. leading to the travel time savings and ticket revenues of the project. Finally, RSF makes use of scenario forecasting where trend scenarios such as economic growth and level...

  20. Accuracy Assessment Points for Dinosaur National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This point file displays the 1543 accuracy assessment (AA) points visited in the summer of 2005 as part of the vegetation mapping project. The points were randomly...

  1. Accuracy Assessment Points for Colorado National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This point file displays the 500 accuracy assessment (AA) points visited in July and August of 2004 as part of the vegetation mapping project. Five hundred and one...

  2. GIS Technology: Resource and Habitability Assessment Tool Project

    Data.gov (United States)

    National Aeronautics and Space Administration — This is a one-year project to apply a GIS analysis tool to new orbital data for lunar resource assessment and martian habitability identification.  We used...

  3. Air Traffic Management Cost Assessment Tool Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Robust Analytics air traffic management cost assessment tool provides the comprehensive capability to analyze the impacts of NASA Airspace Systems Program (ASP)...

  4. Solmap: Project In India's Solar Resource Assessment

    OpenAIRE

    Indradip Mitra; Kaushal Chhatbar; Ashvini Kumar; Godugunur Giridhar; Ramdhan Vashistha; Richard Meyer; Marko Schwandt

    2014-01-01

    India launched Jawaharlal Nehru National Solar Mission in 2009, which aims to set up 20 000 MW of grid connected solar power, besides 2 000 MW equivalent of off-grid applications and cumulative growth of solar thermal collector area to 20 million m2 by 2022. Availability of reliable and accurate solar radiation data is crucial to achieve the targets. As a result of this initiative, Ministry of New and Renewable Energy (MNRE) of Government of India (GoI) has awarded a project to Centre for Win...

  5. Pioneer CESA Guidance Project; Counselor Performance Assessment.

    Science.gov (United States)

    Bryant, Brenda; Andrews, Theodore

    This document contains the performance assessment instruments and criteria which will be applied as part of the certification process for beginning school counselors in Georgia. The purpose of the process is to provide the candidate with an opportunity to demonstrate the essential competencies on the job. While the candidate bears the ultimate…

  6. State Assessment and Testing Programs: An Annotated ERIC Bibliography. Volume I: General References. Volume II: Individual State Programs.

    Science.gov (United States)

    Porter, Deborah Elena; Wildemuth, Barbara

    There is a growing body of literature in the ERIC data base pertaining to state educational assessment and testing programs. Volume I of this bibliography includes abstracts of 39 documents and journal articles describing the design and implementation of programs, as well as the technical and political issues which have been addressed by the…

  7. Climate Change in Environmental Impact Assessment of Renewable Energy Projects

    DEFF Research Database (Denmark)

    Larsen, Sanne Vammen

    2012-01-01

    Many renewable energy projects are subject to EIA. However a question that surfaces is what use an impact assessment is when the project is ‘good for the environment’? One of the current topics receiving much attention in impact assessment is climate change and how this factor is integrated...... in impact assessments. This warrants the question: How do we assess the climate change related impacts of a project that inherently has a positive effect on climate? This paper is based on a document study of EIA reports from Denmark. The results show that climate change is included in most of the EIA...... reports reviewed, and that only climate change mitigation is in focus while adaptation is absent. Also the results point to focus on positive impacts, while the indirect negative impacts are less apparent. This leads to a discussion of the results in the light of the purpose of EIA....

  8. Transport project evaluation: feasibility risk assessment and scenario forecasting

    DEFF Research Database (Denmark)

    Salling, Kim Bang; Leleur, Steen

    2015-01-01

    This paper presents a new approach to transport project assessment in terms of feasibility risk assessment and reference class forecasting. Conventionally, transport project assessment is based upon a Cost-Benefit Analysis (CBA) where evaluation criteria such as Benefit Cost Ratios (BCR...... Scenario Forecasting (RSF) frame. The RSF is anchored in the cost-benefit analysis; thus, it provides decision-makers with a quantitative mean of assessing the transport infrastructure project. First, the RSF method introduces uncertainties within the CBA by applying Optimism Bias uplifts...... on the preliminary construction cost estimates. Hereafter, a quantitative risk analysis is provided making use of Monte Carlo simulation. This approach facilitates random input parameters based upon reference class forecasting, hence, a parameter data fit has been performed in order to obtain validated probability...

  9. Annotating Coloured Petri Nets

    DEFF Research Database (Denmark)

    Lindstrøm, Bo; Wells, Lisa Marie

    2002-01-01

    Coloured Petri nets (CP-nets) can be used for several fundamentally different purposes like functional analysis, performance analysis, and visualisation. To be able to use the corresponding tool extensions and libraries it is sometimes necessary to include extra auxiliary information in the CP-ne...... a certain use of the CP-net. We define the semantics of annotations by describing a translation from a CP-net and the corresponding annotation layers to another CP-net where the annotations are an integrated part of the CP-net....... a method which makes it possible to associate auxiliary information, called annotations, with tokens without modifying the colour sets of the CP-net. Annotations are pieces of information that are not essential for determining the behaviour of the system being modelled, but are rather added to support...

  10. Omics data management and annotation.

    Science.gov (United States)

    Harel, Arye; Dalah, Irina; Pietrokovski, Shmuel; Safran, Marilyn; Lancet, Doron

    2011-01-01

    Technological Omics breakthroughs, including next generation sequencing, bring avalanches of data which need to undergo effective data management to ensure integrity, security, and maximal knowledge-gleaning. Data management system requirements include flexible input formats, diverse data entry mechanisms and views, user friendliness, attention to standards, hardware and software platform definition, as well as robustness. Relevant solutions elaborated by the scientific community include Laboratory Information Management Systems (LIMS) and standardization protocols facilitating data sharing and managing. In project planning, special consideration has to be made when choosing relevant Omics annotation sources, since many of them overlap and require sophisticated integration heuristics. The data modeling step defines and categorizes the data into objects (e.g., genes, articles, disorders) and creates an application flow. A data storage/warehouse mechanism must be selected, such as file-based systems and relational databases, the latter typically used for larger projects. Omics project life cycle considerations must include the definition and deployment of new versions, incorporating either full or partial updates. Finally, quality assurance (QA) procedures must validate data and feature integrity, as well as system performance expectations. We illustrate these data management principles with examples from the life cycle of the GeneCards Omics project (http://www.genecards.org), a comprehensive, widely used compendium of annotative information about human genes. For example, the GeneCards infrastructure has recently been changed from text files to a relational database, enabling better organization and views of the growing data. Omics data handling benefits from the wealth of Web-based information, the vast amount of public domain software, increasingly affordable hardware, and effective use of data management and annotation principles as outlined in this chapter.

  11. "Triple-bottom-line" assessment of urban stormwater projects.

    Science.gov (United States)

    Taylor, A C; Fletcher, T D

    2006-01-01

    New guidelines have been developed and trialled in Australia to assist urban stormwater managers to assess options for projects that aim to improve urban waterway health. These guidelines help users to examine the financial, ecological and social dimensions of projects (i.e., the so-called "triple-bottom-line"). Features of the assessment process described in the guidelines include use of multi criteria analysis, input from technical experts as well as non-technical stakeholders, and provision of three alternative levels of assessment to suit stormwater managers with differing needs and resources. This paper firstly provides a background to the new guidelines and triple-bottom-line assessment. The assessment methodology promoted in the new guidelines is then briefly summarised. This methodology is compared and contrasted with European guidelines from the "SWARD" project that have been primarily developed for assessing the relative sustainability of options involving urban water supply and sewerage assets. Finally, the paper discusses how assessment methodologies that evaluate the financial, ecological and social dimensions of projects can, under some circumstances, be used to evaluate the relative progress of options for urban water management on a journey towards the widely pursued, but vaguely defined goal of "sustainable development".

  12. Fluid annotations through open hypermedia: Using and extending emerging Web standards

    DEFF Research Database (Denmark)

    Bouvin, Niels Olof; Zellweger, Polle Trescott; Grønbæk, Kaj

    2002-01-01

    The Fluid Documents project has developed various research prototypes that show that powerful annotation techniques based on animated typographical changes can help readers utilize annotations more effectively. Our recently-developed Fluid Open Hypermedia prototype supports the authoring and brow...

  13. Adaptive Peircean decision aid project summary assessments.

    Energy Technology Data Exchange (ETDEWEB)

    Senglaub, Michael E.

    2007-01-01

    This efforts objective was to identify and hybridize a suite of technologies enabling the development of predictive decision aids for use principally in combat environments but also in any complex information terrain. The technologies required included formal concept analysis for knowledge representation and information operations, Peircean reasoning to support hypothesis generation, Mill's's canons to begin defining information operators that support the first two technologies and co-evolutionary game theory to provide the environment/domain to assess predictions from the reasoning engines. The intended application domain is the IED problem because of its inherent evolutionary nature. While a fully functioning integrated algorithm was not achieved the hybridization and demonstration of the technologies was accomplished and demonstration of utility provided for a number of ancillary queries.

  14. Wabash River Coal Gasification Repowering Project: A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2002-01-15

    The goal of the U.S. Department of Energy (DOE) Clean Coal Technology Program (CCT) is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept stage. This document serves as a DOE post-project assessment (PPA) of a project selected in CCT Round IV, the Wabash River Coal Gasification Repowering (WRCGR) Project, as described in a Report to Congress (U.S. Department of Energy 1992). Repowering consists of replacing an existing coal-fired boiler with one or more clean coal technologies to achieve significantly improved environmental performance. The desire to demonstrate utility repowering with a two-stage, pressurized, oxygen-blown, entrained-flow, integrated gasification combined-cycle (IGCC) system prompted Destec Energy, Inc., and PSI Energy, Inc., to form a joint venture and submit a proposal for this project. In July 1992, the Wabash River Coal Gasification Repowering Project Joint Venture (WRCGRPJV, the Participant) entered into a cooperative agreement with DOE to conduct this project. The project was sited at PSI Energy's Wabash River Generating Station, located in West Terre Haute, Indiana. The purpose of this CCT project was to demonstrate IGCC repowering using a Destec gasifier and to assess long-term reliability, availability, and maintainability of the system at a fully commercial scale. DOE provided 50 percent of the total project funding (for capital and operating costs during the demonstration period) of $438 million.

  15. Project W-420 Ventilation Stack Monitoring System Year 2000 Compliance Assessment Project Plan

    Energy Technology Data Exchange (ETDEWEB)

    BUSSELL, J.H.

    1999-08-25

    This assessment describes the potential Year 2000 (Y2K) problems and describes the methods for achieving Y2K Compliance for Project W-420, Ventilation Stack Monitoring Systems Upgrades. The purpose of this assessment is to give an overview of the project. This document will not be updated and any dates contained in this document are estimates and may change. The project work scope includes upgrades to ventilation stacks and generic effluent monitoring systems (GEMS) at the 244-A Double Contained Receiver Tank (DCRT), the 244-BX DCRT, the 244-CR Vault, tanks 241-C-105 and 241-C-106, the 244-S DCRT, and the 244-TX DCRT. A detailed description of system dates, functions, interfaces, potential Y2K problems, and date resolutions can not be described since the project is in the definitive design phase, This assessment will describe the methods, protocols, and practices to ensure that equipment and systems do not have Y2K problems.

  16. [Health impact assessment of building and investment projects].

    Science.gov (United States)

    Thriene, B

    2003-02-01

    For regional planning and approval procedures for building projects of a certain order of magnitude and power rating according to the German Federal Act on the Prevention of Emissions with Integrated Environmental Impact Assessment (EIA), the German public health departments, acting as public authorities, increasingly perform health impact assessments (HIA). The amended Act on Environmental Impact Assessment, the Decree on industrial plants which require approval (4th Federal Decree on Emission Prevention) and the Health Service Acts of the Federal States of Germany form the legal basis for the assessment of health issues with regard to approval procedures for building and investment projects. In the framework of the "Action Programme for the Environment and Health", the present article aims at making this process binding and to ensure responsibility and general involvement of the Public Health departments in all German Federal States. Future criteria, basic principles and procedures for single-case testing as well as assessment standards should meet these requirements. The Federal Ministry for the Environment and the Federal Ministry for Health should agree on Health Impact Assessment (HIA ) as well as on the relaxant stipulations in their procedures and general administrative regulations for implementing the Environmental Impact Assessment Act (EIA). Current EIA procedures focus on urban development and road construction, industrial investment projects, intensive animal husbandry plants, waste incineration plants, and wind energy farms. This paper illustrates examples meeting with varying degrees of public acceptance. However, being involved in the regional planning procedure for the project "Extension of the federal motorway A 14 from Magdeburg to Schwerin", the Public Health Service also shares global responsibility for health and climate protection. Demands for shortest routing conflict with objectives of environmental protection which should be given long

  17. Hellsgate Winter Range : Wildlife Mitigation Project. Preliminary Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1995-01-01

    The Bonneville Power Administration proposes funding the Hellsgate Winter Range Wildlife Mitigation Project in cooperation with the Colville Convederated Tribes and Bureau of Indian Affairs. This Preliminary Environmental Assessment examines the potential environmental effects of acquiring and managing property for wildlife and wildlife habitat within a large project area. The Propose action is intended to meet the need for mitigation of wildlife and wild life habitat that was adversely affected by the construction of Grand Coulee and Chief Joseph Dams and their reservoirs.

  18. Image quality assessment metrics by using directional projection

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Objective image quality mcasure, which is a fundamental and challenging job in image processing, evaluates the image quality consistently with human perception automatically. On the assumption that any image distortion could be modeled as the difference between the directional projection-based maps of reference and distortion images, wc propose a new objective quality assessment method based on directional projection for full reference model. Experimental results show that the proposed metrics are well consistent with the subjective quality score.

  19. Assessment of Transport Projects: Risk Analysis and Decision Support

    DEFF Research Database (Denmark)

    Salling, Kim Bang

    2008-01-01

    The subject of this thesis is risk analysis and decision support in the context of transport infrastructure assessment. During my research I have observed a tendency in studies of assessing transport projects of overlooking the substantial amount of uncertainties within the decision making process....... Even though vast amounts of money are spent upon preliminary models, environmental investigations, public hearings, etc., the resulting outcome is given by point estimates, i.e. in terms of net present values or benefit-cost rates. This thesis highlights the perspective of risks when assessing...... transport projects, namely by moving from point estimates to interval results. The main focus of this Ph.D. study has been to develop a valid, flexible and functional decision support tool in which risk oriented aspects of project evaluation is implemented. Throughout the study six papers have been produced...

  20. Students’ Self-Assessment in Project-Based Work

    Directory of Open Access Journals (Sweden)

    Alvyda Liuolienė

    2014-12-01

    Full Text Available The article aims at exploring the benefits of self-assessment as it is an important skill for lifelong learning and for critical reflection on one’s own performance. The authors of the article focus on students’ self-assessment of their language proficiency skills and achievements in working on projects. Students’ reflection on their learning has numerous benefits, such as motivation, self-direction, greater responsibility, decreased intimidation and fear of the audience, development of critical thinking, etc. The paper presents the analysis of a questionnaire based on the research of respondents’ self-evaluation of working on the project. The study has aimed at finding out the students’ attitude towards project-based learning and their assessment of their personal progress in respect of the development of their language proficiency skills.

  1. Towards e-Government project assessment: European approach

    Directory of Open Access Journals (Sweden)

    Pavel Mates

    2013-06-01

    Full Text Available The objective of the paper is to analyse current approaches to the assessment of e-Government projects as the specifi c public projects and to suggest how to improve these approaches in order to eliminate their shortcomings. The nonnormative theoretical methods are used to analyse empirical results of previous researches; particularly the deduction method is used to prove that current approaches to the evaluation of e-Government projects have some inequalities, the analogy and comparison methods are used to create general typology of e-Government projects and the induction method is used to seek examples of the indicators and metrics. The results are based on analysis of extensive amount of e-Government projects, which have been realized in different European countries in the past twenty years. The basic result of the research is creation of the ten most common types of e-Government projects typology. The fundamental conclusion obtained from the results of this research is that this typology can be used as the core of new E-Government General Assessment Framework, which eliminates problems of previous approaches, allows adjusting metrics and indicators to each type of projects, keeps comparability of results and thus making possible the use of benchmarking methods.

  2. Personnalisation de Syst\\`emes OLAP Annot\\'es

    CERN Document Server

    Jerbi, Houssem; Ravat, Franck; Teste, Olivier

    2010-01-01

    This paper deals with personalization of annotated OLAP systems. Data constellation is extended to support annotations and user preferences. Annotations reflect the decision-maker experience whereas user preferences enable users to focus on the most interesting data. User preferences allow annotated contextual recommendations helping the decision-maker during his/her multidimensional navigations.

  3. Uncertainties of Assessing Projected Changes in Precipitation Extremes

    Science.gov (United States)

    Brekke, L. D.; Barsugli, J. J.

    2011-12-01

    Water resource managers share a common challenge in understanding what climate change could mean for future hydroclimate extremes. Understanding the uncertainty of projected changes in extremes is critical to making decisions about whether to invest in adaptation measures today or delay until more credible information becomes available. Uncertainties arise from several methodological choices including, including criteria that drive selection of global climate projection information to frame the assessment, whether and how to bias-correct global projection information, and how to represent local controls on how to spatially downscale translations of these projections. This presentation highlights such uncertainties, focusing on projected changes in precipitation indicated by two metrics: annual total and annual maximum daily amount. Attention is given to metric conditions varying from typical (i.e. metrics having 0.50 cumulative probability) to extreme (i.e. annual totals having 0.01 and 0.05 cumulative probabilities, which are relevant to drought, and annual maximum daily amounts having 0.95 and 0.99 cumulative probabilities, which are relevant to floods). The assessment is informed by an ensemble of 53 daily CMIP3 precipitation projections from the "Bias Corrected and Downscaled WCRP CMIP3 Climate Projections" web-archive (see URL), regridded over the contiguous United States from native climate model resolution to a common 2° grid and reported during 1961-2000, 2046-2065 and 2081-2100. Focusing on changes between 20-year periods, evaluations include (a) assessing changes in typical metric conditions and determining whether changes in metric distributions are statistically significant, (b) characterizing metric extremes using parametric techniques and assessing for changes in metric extremes, (c) assessing how uncertainties in projected typical and extreme metrics associate with three sources of global climate projection uncertainty (emissions scenario, global

  4. SKI SITE-94. Deep Repository Performance Assessment Project. Summary

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-02-01

    The function of SITE-94 is to provide the Swedish Nuclear Power Inspectorate (SKI) with the capacity and supporting knowledge needed for reviewing the Swedish nuclear industry`s R and D programs and for reviewing license applications, as stipulated in Swedish legislation. The report is structured as a Performance Assessment exercise needed for input to decisions regarding repository safety, but the SITE-94 is neither a safety assessment nor a model for future assessments to be undertaken by the prospective licensee. The specific project objectives of SITE-94 comprise site evaluation, performance assessment methodology, canister integrity and radionuclide release and transport calculations. The main report (SKI-R--96-36) gives a detailed description of the many inter-related studies undertaken as part of the research project, while the present report presents a condensed summary of the main report. 46 refs.

  5. JAFA: a protein function annotation meta-server

    DEFF Research Database (Denmark)

    Friedberg, Iddo; Harder, Tim; Godzik, Adam

    2006-01-01

    With the high number of sequences and structures streaming in from genomic projects, there is a need for more powerful and sophisticated annotation tools. Most problematic of the annotation efforts is predicting gene and protein function. Over the past few years there has been considerable progre...

  6. Bioinformatics Assisted Gene Discovery and Annotation of Human Genome

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    As the sequencing stage of human genome project is near the end, the work has begun for discovering novel genes from genome sequences and annotating their biological functions. Here are reviewed current major bioinformatics tools and technologies available for large scale gene discovery and annotation from human genome sequences. Some ideas about possible future development are also provided.

  7. Performance Assessment Framework for Private Finance Initiative Projects in Malaysia

    Directory of Open Access Journals (Sweden)

    Lop Nor Suzila

    2016-01-01

    Full Text Available Private Finance Initiative (PFI is viewed as restructuring the previous privatisation concept in delivering value for money for the Malaysian public infrastructure. Among the restructuring efforts in the privatisation is specifying the standard assessment of private concessionaires’ performance through the execution of key performance indicators (KPIs where the private concessionaires’ performance is benchmarked against the government’s standard. KPIs have served as useful tools in assessing performance of PFI projects. However, there is still lacking on determination methods performed to define and measure this KPIs and the absence of guidelines or a framework is also an issue in the implementation of the PFI procurement in Malaysia. Therefore, the objectives of this paper is to investigate the notion of performance assessment model approaches globally (i.e. UK, China, Australia, Serbia and Malaysia and to identify direction for PFI performance assessment tools (KPIs to be practiced in Malaysia. Based on the consideration of these models, this research paper propose an initial framework of performance assessment for PFI projects in Malaysia. The framework is deliberate to cover the performance of PFI at the operation and maintenance phase. The outcomes of this paper can serve as a theoretical base for the development of comprehensive and effective performance assessment for PFI projects in Malaysia.

  8. Assessing Embodied Energy and Greenhouse Gas Emissions in Infrastructure Projects

    Directory of Open Access Journals (Sweden)

    Jan Krantz

    2015-10-01

    Full Text Available Greenhouse gas (GHG emissions from construction processes are a serious concern globally. Of the several approaches taken to assess emissions, Life Cycle Assessment (LCA based methods do not just take into account the construction phase, but consider all phases of the life cycle of the construction. However, many current LCA approaches make general assumptions regarding location and effects, which do not do justice to the inherent dynamics of normal construction projects. This study presents a model to assess the embodied energy and associated GHG emissions, which is specifically adapted to address the dynamics of infrastructure construction projects. The use of the model is demonstrated on the superstructure of a prefabricated bridge. The findings indicate that Building Information Models/Modeling (BIM and Discrete Event Simulation (DES can be used to efficiently generate project-specific data, which is needed for estimating the embodied energy and associated GHG emissions in construction settings. This study has implications for the advancement of LCA-based methods (as well as project management as a way of assessing embodied energy and associated GHG emissions related to construction.

  9. Child Development Center Construction Project Final Environmental Assessment

    Science.gov (United States)

    2005-04-01

    3-9 3.5.1 Noise Sensitive Receptors...Project Page iii Environmental Assessment LIST OF ACRONYMS 96 ABW 96th Airbase Wing 96 ABW/SEU Range Safety 96 AMDS/ SGB Base Bioenvironmental...site is classified as landscaped/urban. Some longleaf pines would be removed as a result of the construction, but no sensitive species would be

  10. Environmental assessment, expanded Ponnequin wind energy project, Weld County, Colorado

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1999-02-01

    The US Department of Energy (DOE) has considered a proposal from the State of Colorado, Office of Energy Conservation (OEC), for funding construction of the Expanded Ponnequin Wind Project in Weld County, Colorado. OEC plans to enter into a contracting arrangement with Public Service Company of Colorado (PSCo) for the completion of these activities. PSCo, along with its subcontractors and business partners, are jointly developing the Expanded Ponnequin Wind Project. The purpose of this Final Environmental Assessment (EA) is to provide DOE and the public with information on potential environmental impacts associated with the Expanded Ponnequin Wind Energy Project. This EA, and public comments received on it, were used in DOE`s deliberations on whether to release funding for the expanded project under the Commercialization Ventures Program.

  11. Social Impact Assessment : Guidance for assessing and managing the social impacts of projects

    NARCIS (Netherlands)

    Vanclay, Francis; Esteves, Ana Maria; Aucamp, Ilse; Franks, Daniel

    2015-01-01

    The purpose of this Guidance Note is to provide advice to various stakeholders about what is expected in good practice social impact assessment (SIA) and social impact management processes, especially in relation to project development. Project development refers to dams, mines, oil and gas drilling

  12. Environmental Restoration Disposal Facility (Project W-296) Safety Assessment

    Energy Technology Data Exchange (ETDEWEB)

    Armstrong, D.L.

    1994-08-01

    This Safety Assessment is based on information derived from the Conceptual Design Report for the Environmental Restoration Disposal Facility (DOE/RL 1994) and ancillary documentation developed during the conceptual design phase of Project W-296. The Safety Assessment has been prepared to support the Solid Waste Burial Ground Interim Safety Basis document. The purpose of the Safety Assessment is to provide an evaluation of the design to determine if the process, as proposed, will comply with US Department of Energy (DOE) Limits for radioactive and hazardous material exposures and be acceptable from an overall health and safety standpoint. The evaluation considered affects on the worker, onsite personnel, the public, and the environment.

  13. Wabash River Coal Gasification Repowering Project: A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2002-01-15

    The goal of the U.S. Department of Energy (DOE) Clean Coal Technology Program (CCT) is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept stage. This document serves as a DOE post-project assessment (PPA) of a project selected in CCT Round IV, the Wabash River Coal Gasification Repowering (WRCGR) Project, as described in a Report to Congress (U.S. Department of Energy 1992). Repowering consists of replacing an existing coal-fired boiler with one or more clean coal technologies to achieve significantly improved environmental performance. The desire to demonstrate utility repowering with a two-stage, pressurized, oxygen-blown, entrained-flow, integrated gasification combined-cycle (IGCC) system prompted Destec Energy, Inc., and PSI Energy, Inc., to form a joint venture and submit a proposal for this project. In July 1992, the Wabash River Coal Gasification Repowering Project Joint Venture (WRCGRPJV, the Participant) entered into a cooperative agreement with DOE to conduct this project. The project was sited at PSI Energy's Wabash River Generating Station, located in West Terre Haute, Indiana. The purpose of this CCT project was to demonstrate IGCC repowering using a Destec gasifier and to assess long-term reliability, availability, and maintainability of the system at a fully commercial scale. DOE provided 50 percent of the total project funding (for capital and operating costs during the demonstration period) of $438 million. Construction for the demonstration project was started in July 1993. Pre-operational tests were initiated in August 1995, and construction was completed in November 1995. Commercial operation began in November 1995, and the demonstration period was completed in

  14. Collaborative annotation of 3D crystallographic models.

    Science.gov (United States)

    Hunter, J; Henderson, M; Khan, I

    2007-01-01

    This paper describes the AnnoCryst system-a tool that was designed to enable authenticated collaborators to share online discussions about 3D crystallographic structures through the asynchronous attachment, storage, and retrieval of annotations. Annotations are personal comments, interpretations, questions, assessments, or references that can be attached to files, data, digital objects, or Web pages. The AnnoCryst system enables annotations to be attached to 3D crystallographic models retrieved from either private local repositories (e.g., Fedora) or public online databases (e.g., Protein Data Bank or Inorganic Crystal Structure Database) via a Web browser. The system uses the Jmol plugin for viewing and manipulating the 3D crystal structures but extends Jmol by providing an additional interface through which annotations can be created, attached, stored, searched, browsed, and retrieved. The annotations are stored on a standardized Web annotation server (Annotea), which has been extended to support 3D macromolecular structures. Finally, the system is embedded within a security framework that is capable of authenticating users and restricting access only to trusted colleagues.

  15. Semantic annotation of mutable data.

    Science.gov (United States)

    Morris, Robert A; Dou, Lei; Hanken, James; Kelly, Maureen; Lowery, David B; Ludäscher, Bertram; Macklin, James A; Morris, Paul J

    2013-01-01

    Electronic annotation of scientific data is very similar to annotation of documents. Both types of annotation amplify the original object, add related knowledge to it, and dispute or support assertions in it. In each case, annotation is a framework for discourse about the original object, and, in each case, an annotation needs to clearly identify its scope and its own terminology. However, electronic annotation of data differs from annotation of documents: the content of the annotations, including expectations and supporting evidence, is more often shared among members of networks. Any consequent actions taken by the holders of the annotated data could be shared as well. But even those current annotation systems that admit data as their subject often make it difficult or impossible to annotate at fine-enough granularity to use the results in this way for data quality control. We address these kinds of issues by offering simple extensions to an existing annotation ontology and describe how the results support an interest-based distribution of annotations. We are using the result to design and deploy a platform that supports annotation services overlaid on networks of distributed data, with particular application to data quality control. Our initial instance supports a set of natural science collection metadata services. An important application is the support for data quality control and provision of missing data. A previous proof of concept demonstrated such use based on data annotations modeled with XML-Schema.

  16. Semantic annotation of mutable data.

    Directory of Open Access Journals (Sweden)

    Robert A Morris

    Full Text Available Electronic annotation of scientific data is very similar to annotation of documents. Both types of annotation amplify the original object, add related knowledge to it, and dispute or support assertions in it. In each case, annotation is a framework for discourse about the original object, and, in each case, an annotation needs to clearly identify its scope and its own terminology. However, electronic annotation of data differs from annotation of documents: the content of the annotations, including expectations and supporting evidence, is more often shared among members of networks. Any consequent actions taken by the holders of the annotated data could be shared as well. But even those current annotation systems that admit data as their subject often make it difficult or impossible to annotate at fine-enough granularity to use the results in this way for data quality control. We address these kinds of issues by offering simple extensions to an existing annotation ontology and describe how the results support an interest-based distribution of annotations. We are using the result to design and deploy a platform that supports annotation services overlaid on networks of distributed data, with particular application to data quality control. Our initial instance supports a set of natural science collection metadata services. An important application is the support for data quality control and provision of missing data. A previous proof of concept demonstrated such use based on data annotations modeled with XML-Schema.

  17. A Conceptual Framework for Post-Project Assessment Applied to the Provo River Restoration Project, Utah

    Science.gov (United States)

    Goetz, R. R.; Schmidt, J. C.; Erwin, S.; Gooseff, M. N.

    2007-12-01

    Comprehensive assessment of stream restoration projects necessitates evaluation of: 1) the actual pre-project condition in relation to the public perception of impairment, 2) the project concept, goals, and objectives, 3) the project design, 4) the project as actually built, and 5) the project performance. We applied this framework in assessing the recently completed Provo River Restoration Project (PRRP). Begun in 1999 and completed in 2007, the PRRP's budget was 10 million for construction of approximately 16 km of channel and adjacent floodplain wetlands. We analyzed project planning documents, design documents, and made field measurements of the Provo River channel before and after channel re-alignment. Although the impaired, pre-project channel was never explicitly measured by restoration designers, our measurements demonstrate that the bed material organization and floodplain inundation frequency was perturbed from those attributes typical of channels in similar physiographic settings. Project designers did not develop quantitative project goals, and there were no metrics by which performance success was to be measured. Design documents demonstrate that the realigned channel has the potential to re-establish channel and floodplain connection. Surprisingly, there were significant differences between design and as-built channel geometry. These discrepancies have the potential to adversely impact project performance in re-establishing the ecosystem benefits provided by a naturalized channel/floodplain connection. However, field construction of a channel whose capacity is larger than designed has been compensated by a hydrologic regime whose common floods have been larger than anticipated. In addition, the original channel design did not explicitly consider sediment supply, which has the potential to rearrange reconstructed channel elements in the downstream part of the project. Collectively, this analysis demonstrates the degree of uncertainty and ambiguity

  18. Environmental Assessment Expanded Ponnequin Wind Energy Project Weld County, Colorado

    Energy Technology Data Exchange (ETDEWEB)

    N/A

    1999-03-02

    The U.S.Department of Energy (DOE) has considered a proposal from the State of Colorado, Office of Energy Conservation (OEC), for funding construction of the Expanded Ponnequin Wind Project in Weld County, Colorado. OEC plans to enter into a contracting arrangement with Public Service Company of Colorado (PSCO) for the completion of these activities. PSCo, along with its subcontractors and business partners, are jointly developing the Expanded Ponnequin Wind Project. DOE completed an environmental assessment of the original proposed project in August 1997. Since then, the geographic scope and the design of the project changed, necessitating additional review of the project under the National Environmental Policy Act. The project now calls for the possible construction of up to 48 wind turbines on State and private lands. PSCo and its partners have initiated construction of the project on private land in Weld County, Colorado. A substation, access road and some wind turbines have been installed. However, to date, DOE has not provided any funding for these activities. DOE, through its Commercialization Ventures Program, has solicited applications for financial assistance from state energy offices, in a teaming arrangement with private-sector organizations, for projects that will accelerate the commercialization of emerging renewable energy technologies. The Commercialization Ventures Program was established by the Renewable Energy and Energy Efficiency Technology Competitiveness Act of 1989 (P.L. 101-218) as amended by the Energy Policy Act of 1992 (P.L. 102-486). The Program seeks to assist entry into the marketplace of newly emerging renewable energy technologies, or of innovative applications of existing technologies. In short, an emerging renewable energy technology is one which has already proven viable but which has had little or no operational experience. The Program is managed by the Department of Energy, Office of Energy Efficiency and Renewable Energy. The

  19. National Assessment of Oil and Gas Project - Raton Basin-Sierra Grande Uplift Province (041) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  20. USGS National and Global Oil and Gas Assessment Project-Permian Basin Province, Midland Basin, Wolfcamp Shale Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  1. USGS National and Global Oil and Gas Assessment Project-Permian Basin Province, Val Verde Basin, Canyon Sandstones Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  2. USGS National Assessment of Oil and Gas Project - Mississippian Barnett Shale, Bend Arch-Fort Worth Basin Province Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  3. National Assessment of Oil and Gas Project Devonian Marcellus Shale of the Appalachian Basin Province (067) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  4. National Assessment of Oil and Gas Project - Northern Alaska Gas Hydrate Total Petroleum System, Northern Alaska Province (001) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  5. National Assessment of Oil and Gas Project Bend Arch-Fort Worth Basin Province (045) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  6. National Assessment of Oil and Gas Project - Brookian Coalbed Gas Composite Total Petroleum System, Northern Alaska Province (001) Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  7. EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome

    Directory of Open Access Journals (Sweden)

    Hamilton John P

    2007-10-01

    Full Text Available Abstract Background Despite the improvements of tools for automated annotation of genome sequences, manual curation at the structural and functional level can provide an increased level of refinement to genome annotation. The Institute for Genomic Research Rice Genome Annotation (hereafter named the Osa1 Genome Annotation is the product of an automated pipeline and, for this reason, will benefit from the input of biologists with expertise in rice and/or particular gene families. Leveraging knowledge from a dispersed community of scientists is a demonstrated way of improving a genome annotation. This requires tools that facilitate 1 the submission of gene annotation to an annotation project, 2 the review of the submitted models by project annotators, and 3 the incorporation of the submitted models in the ongoing annotation effort. Results We have developed the Eukaryotic Community Annotation Package (EuCAP, an annotation tool, and have applied it to the rice genome. The primary level of curation by community annotators (CA has been the annotation of gene families. Annotation can be submitted by email or through the EuCAP Web Tool. The CA models are aligned to the rice pseudomolecules and the coordinates of these alignments, along with functional annotation, are stored in the MySQL EuCAP Gene Model database. Web pages displaying the alignments of the CA models to the Osa1 Genome models are automatically generated from the EuCAP Gene Model database. The alignments are reviewed by the project annotators (PAs in the context of experimental evidence. Upon approval by the PAs, the CA models, along with the corresponding functional annotations, are integrated into the Osa1 Genome Annotation. The CA annotations, grouped by family, are displayed on the Community Annotation pages of the project website http://rice.tigr.org, as well as in the Community Annotation track of the Genome Browser. Conclusion We have applied EuCAP to rice. As of July 2007, the

  8. Quantification for complex assessment: uncertainty estimation in final year project thesis assessment

    Science.gov (United States)

    Kim, Ho Sung

    2013-12-01

    A quantitative method for estimating an expected uncertainty (reliability and validity) in assessment results arising from the relativity between four variables, viz examiner's expertise, examinee's expertise achieved, assessment task difficulty and examinee's performance, was developed for the complex assessment applicable to final year project thesis assessment including peer assessment. A guide map can be generated by the method for finding expected uncertainties prior to the assessment implementation with a given set of variables. It employs a scale for visualisation of expertise levels, derivation of which is based on quantified clarities of mental images for levels of the examiner's expertise and the examinee's expertise achieved. To identify the relevant expertise areas that depend on the complexity in assessment format, a graphical continuum model was developed. The continuum model consists of assessment task, assessment standards and criterion for the transition towards the complex assessment owing to the relativity between implicitness and explicitness and is capable of identifying areas of expertise required for scale development.

  9. Algal functional annotation tool

    Energy Technology Data Exchange (ETDEWEB)

    Lopez, D. [UCLA; Casero, D. [UCLA; Cokus, S. J. [UCLA; Merchant, S. S. [UCLA; Pellegrini, M. [UCLA

    2012-07-01

    The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of genes on KEGG pathway maps and batch gene identifier conversion.

  10. Implementation of Relevant Methods in Assessing Traffic-Technological Projects

    Directory of Open Access Journals (Sweden)

    Danijela Barić

    2007-09-01

    Full Text Available The assessment of investment traffic-technological projectsmeans a set of activities whose basic aim is to determine the justificationand feasibility of the projects. The decision-makingprocess, including the decision-making on investments is an extremelycomplex process, and the decision-maker has to have avision of the future and make decisions accordingly in a modemand flexible manner. Therefore, the decisions need to be theresult of a planning and research process based on relevant scientificmethods. The work includes the selected, analysed andpresented methods of cost-benefit analysis, methods of multi-criteria decision-making and SWOT (Strengths, Weaknesses,Opportunities, and Threats analysis methods. Regarding thebasic characteristics, the mentioned methods have been compared,the order of their implementation has been determined,and then they have been implemented in assessing the traffic-technological projects of reconstmction with the aim of selectingthe optimal variant solution.

  11. Automated analysis and annotation of basketball video

    Science.gov (United States)

    Saur, Drew D.; Tan, Yap-Peng; Kulkarni, Sanjeev R.; Ramadge, Peter J.

    1997-01-01

    Automated analysis and annotation of video sequences are important for digital video libraries, content-based video browsing and data mining projects. A successful video annotation system should provide users with useful video content summary in a reasonable processing time. Given the wide variety of video genres available today, automatically extracting meaningful video content for annotation still remains hard by using current available techniques. However, a wide range video has inherent structure such that some prior knowledge about the video content can be exploited to improve our understanding of the high-level video semantic content. In this paper, we develop tools and techniques for analyzing structured video by using the low-level information available directly from MPEG compressed video. Being able to work directly in the video compressed domain can greatly reduce the processing time and enhance storage efficiency. As a testbed, we have developed a basketball annotation system which combines the low-level information extracted from MPEG stream with the prior knowledge of basketball video structure to provide high level content analysis, annotation and browsing for events such as wide- angle and close-up views, fast breaks, steals, potential shots, number of possessions and possession times. We expect our approach can also be extended to structured video in other domains.

  12. Risk assessment method of major unsafe hydroelectric project

    Institute of Scientific and Technical Information of China (English)

    WU ZhongRu; SU HuaiZhi; GUO HaiQing

    2008-01-01

    Based on the characteristics of major unsafe hydroelectric projects and the data from field detection, in situ monitoring, and regular safety inspection, the funda- menial principles of operation risk assessment are proposed in this paper. Mean- while, a three layer hierarchical system is constructed, and an improved analytical hierarchical process combining genetic algorithm and analytical hierarchical process is established, with corresponding program. The operation risk of some unsafe dam was assessed with the principles, method and program presented in this paper and the major factors which would affect the operation of the dam were pointed out.

  13. Risk assessment method of major unsafe hydroelectric project

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Based on the characteristics of major unsafe hydroelectric projects and the data from field detection, in situ monitoring, and regular safety inspection, the funda-mental principles of operation risk assessment are proposed in this paper. Mean-while, a three layer hierarchical system is constructed, and an improved analytical hierarchical process combining genetic algorithm and analytical hierarchical process is established, with corresponding program. The operation risk of some unsafe dam was assessed with the principles, method and program presented in this paper and the major factors which would affect the operation of the dam were pointed out.

  14. A Novel Approach to Semantic and Coreference Annotation at LLNL

    Energy Technology Data Exchange (ETDEWEB)

    Firpo, M

    2005-02-04

    A case is made for the importance of high quality semantic and coreference annotation. The challenges of providing such annotation are described. Asperger's Syndrome is introduced, and the connections are drawn between the needs of text annotation and the abilities of persons with Asperger's Syndrome to meet those needs. Finally, a pilot program is recommended wherein semantic annotation is performed by people with Asperger's Syndrome. The primary points embodied in this paper are as follows: (1) Document annotation is essential to the Natural Language Processing (NLP) projects at Lawrence Livermore National Laboratory (LLNL); (2) LLNL does not currently have a system in place to meet its need for text annotation; (3) Text annotation is challenging for a variety of reasons, many related to its very rote nature; (4) Persons with Asperger's Syndrome are particularly skilled at rote verbal tasks, and behavioral experts agree that they would excel at text annotation; and (6) A pilot study is recommend in which two to three people with Asperger's Syndrome annotate documents and then the quality and throughput of their work is evaluated relative to that of their neuro-typical peers.

  15. Integrative neural networks models for stream assessment in restoration projects

    Science.gov (United States)

    Gazendam, Ed; Gharabaghi, Bahram; Ackerman, Josef D.; Whiteley, Hugh

    2016-05-01

    Stream-habitat assessment for evaluation of restoration projects requires the examination of many parameters, both watershed-scale and reach-scale, to incorporate the complex non-linear effects of geomorphic, riparian, watershed and hydrologic factors on aquatic ecosystems. Rapid geomorphic assessment tools used by many jurisdictions to assess natural channel design projects seldom include watershed-level parameters, which have been shown to have a significant effect on benthic habitat in stream systems. In this study, Artificial Neural Network (ANN) models were developed to integrate complex non-linear relationships between the aquatic ecosystem health indices and key watershed-scale and reach-scale parameters. Physical stream parameters, based on QHEI parameters, and watershed characteristics data were collected at 112 sites on 62 stream systems located in Southern Ontario. Benthic data were collected separately and benthic invertebrate summary indices, specifically Hilsenhoff's Biotic Index (HBI) and Richness, were determined. The ANN models were trained on the randomly selected 3/4 of the dataset of 112 streams in Ontario, Canada and validated on the remaining 1/4. The R2 values for the developed ANN model predictions were 0.86 for HBI and 0.92 for Richness. Sensitivity analysis of the trained ANN models revealed that Richness was directly proportional to Erosion and Riparian Width and inversely proportional to Floodplain Quality and Substrate parameters. HBI was directly proportional to Velocity Types and Erosion and inversely proportional to Substrate, % Treed and 1:2 Year Flood Flow parameters. The ANN models can be useful tools for watershed managers in stream assessment and restoration projects by allowing consideration of watershed properties in the stream assessment.

  16. Environmental Management Assessment of the Fernald Environmental Management Project (FEMP)

    Energy Technology Data Exchange (ETDEWEB)

    1993-04-01

    This report documents the results of the Environmental Management Assessment performed at the Fernald Environmental Management Project (FEMP) in Fernald, Ohio. During this assessment, the activities conducted by the assessment team included review of internal documents and reports from previous audits and assessments; interviews with US Department of Energy (DOE) and FEMP contractor personnel; and inspection and observation of selected facilities and operations. The onsite portion of the assessment was conducted from March 15 through April 1, 1993, by DOE`s Office of Environmental Audit (EH-24) located within the Office of the Assistant Secretary for Environment, Safety, and Health (EH-1). EH-24 carries out independent assessments of DOE facilities and activities as part of the EH-1 Environment, Safety, and Health (ES&H) Oversight Audit Program. The EH-24 program is designed to evaluate the status of DOE facilities and activities with respect to compliance with Federal, state, and local environmental laws and regulations; compliance with DOE Orders, Guidance and Directives; conformance with accepted industry practices and standards of performance; and the status and adequacy of management systems developed to address environmental requirements. The Environmental Management Assessment of FEMP focused on the adequacy of environmental management systems. Further, in response to requests by the Office of Environmental Restoration and Waste Management (EM) and Fernald Field Office (FN), Quality Assurance and Environmental Radiation activities at FEMP were evaluated from a programmatic standpoint. The results of the evaluation of these areas are contained in the Environmental Protection Programs section in this report.

  17. Cheating. An Annotated Bibliography.

    Science.gov (United States)

    Wildemuth, Barbara M., Comp.

    This 89-item, annotated bibliography was compiled to provide access to research and discussions of cheating and, specifically, cheating on tests. It is not limited to any educational level, nor is it confined to any specific curriculum area. Two data bases were searched by computer, and a library search was conducted. A computer search of the…

  18. Annotation of Regular Polysemy

    DEFF Research Database (Denmark)

    Martinez Alonso, Hector

    Regular polysemy has received a lot of attention from the theory of lexical semantics and from computational linguistics. However, there is no consensus on how to represent the sense of underspecified examples at the token level, namely when annotating or disambiguating senses of metonymic words...

  19. Collaborative Movie Annotation

    Science.gov (United States)

    Zad, Damon Daylamani; Agius, Harry

    In this paper, we focus on metadata for self-created movies like those found on YouTube and Google Video, the duration of which are increasing in line with falling upload restrictions. While simple tags may have been sufficient for most purposes for traditionally very short video footage that contains a relatively small amount of semantic content, this is not the case for movies of longer duration which embody more intricate semantics. Creating metadata is a time-consuming process that takes a great deal of individual effort; however, this effort can be greatly reduced by harnessing the power of Web 2.0 communities to create, update and maintain it. Consequently, we consider the annotation of movies within Web 2.0 environments, such that users create and share that metadata collaboratively and propose an architecture for collaborative movie annotation. This architecture arises from the results of an empirical experiment where metadata creation tools, YouTube and an MPEG-7 modelling tool, were used by users to create movie metadata. The next section discusses related work in the areas of collaborative retrieval and tagging. Then, we describe the experiments that were undertaken on a sample of 50 users. Next, the results are presented which provide some insight into how users interact with existing tools and systems for annotating movies. Based on these results, the paper then develops an architecture for collaborative movie annotation.

  20. Annotated Bibliography. First Edition.

    Science.gov (United States)

    Haring, Norris G.

    An annotated bibliography which presents approximately 300 references from 1951 to 1973 on the education of severely/profoundly handicapped persons. Citations are grouped alphabetically by author's name within the following categories: characteristics and treatment, gross motor development, sensory and motor development, physical therapy for the…

  1. Annotation: The Savant Syndrome

    Science.gov (United States)

    Heaton, Pamela; Wallace, Gregory L.

    2004-01-01

    Background: Whilst interest has focused on the origin and nature of the savant syndrome for over a century, it is only within the past two decades that empirical group studies have been carried out. Methods: The following annotation briefly reviews relevant research and also attempts to address outstanding issues in this research area.…

  2. Annotation of Ehux ESTs

    Energy Technology Data Exchange (ETDEWEB)

    Kuo, Alan; Grigoriev, Igor

    2009-06-12

    22 percent ESTs do no align with scaffolds. EST Pipeleine assembles 17126 consensi from the noaligned ESTs. Annotation Pipeline predicts 8564 ORFS on the consensi. Domain analysis of ORFs reveals missing genes. Cluster analysis reveals missing genes. Expression analysis reveals potential strain specific genes.

  3. Assessment of Smolt Condition for Travel Time Analysis Project, 1987-1997 Project Review.

    Energy Technology Data Exchange (ETDEWEB)

    Schrock, Robin M.; Hans, Karen M.; Beeman, John W. [US Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA

    1997-12-01

    The assessment of Smolt Condition for Travel Time Analysis Project (Bonneville Power Administration Project 87-401) monitored attributes of salmonid smolt physiology in the Columbia and Snake River basins from 1987 to 1997, under the Northwest Power Planning Council Fish and Wildlife Program, in cooperation with the Smolt Monitoring Program of the Fish Passage Center. The primary goal of the project was to investigate the physiological development of juvenile salmonids related to migration rates. The assumption was made that the level of smolt development, interacting with environmental factos such as flow, would be reflected in travel times. The Fish Passage Center applied the physiological measurements of smolt condition to Water Budget management, to regulate flows so as to decrease travel time and increase survival.

  4. Wildlife Habitat Impact Assessment, Chief Joseph Dam Project, Washington : Project Report 1992.

    Energy Technology Data Exchange (ETDEWEB)

    Kuehn, Douglas; Berger, Matthew

    1992-01-01

    Under the Pacific Northwest Electric Power Planning and Conservation Act of 1980, and the subsequent Northwest Power Planning Council`s Columbia River Basin Fish and Wildlife Program, a wildlife habitat impact assessment and identification of mitigation objectives have been developed for the US Army Corps of Engineer`s Chief Joseph Dam Project in north-central Washington. This study will form the basis for future mitigation planning and implementation.

  5. Hellsgate Winter Range : Wildlife Mitigation Project. Final Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1995-03-01

    Bonneville Power Administration (BPA) proposes to fund the Hellsgate Winter Range Wildlife Mitigation Project (Project) in a cooperative effort with the Colville Confederated Tribes and the Bureau of Indian Affairs (BIA). The proposed action would allow the sponsors to secure property and conduct wildlife management activities within the boundaries of the Colville Indian Reservation. This Final Environmental Assessment (EA) examines the potential environmental effects of acquiring and managing property for wildlife and wildlife habitat within a large project area. This area consists of several separated land parcels, of which 2,000 hectares (4,943 acres) have been purchased by BPA and an additional 4,640 hectares (11,466 acres) have been identified by the Colville Confederated Tribes for inclusion in the Project. Four proposed activities (habitat protection, habitat enhancement, operation and maintenance, and monitoring and evaluation) are analyzed. The proposed action is intended to meet the need for mitigation of wildlife and wildlife habitat that was adversely affected by the construction of Grand Coulee and Chief Joseph Dams and their reservoirs.

  6. The CLEF corpus: semantic annotation of clinical text.

    Science.gov (United States)

    Roberts, Angus; Gaizauskas, Robert; Hepple, Mark; Davis, Neil; Demetriou, George; Guo, Yikun; Kola, Jay; Roberts, Ian; Setzer, Andrea; Tapuria, Archana; Wheeldin, Bill

    2007-10-11

    The Clinical E-Science Framework (CLEF) project is building a framework for the capture, integration and presentation of clinical information: for clinical research, evidence-based health care and genotype-meets-phenotype informatics. A significant portion of the information required by such a framework originates as text, even in EHR-savvy organizations. CLEF uses Information Extraction (IE) to make this unstructured information available. An important part of IE is the identification of semantic entities and relationships. Typical approaches require human annotated documents to provide both evaluation standards and material for system development. CLEF has a corpus of clinical narratives, histopathology reports and imaging reports from 20 thousand patients. We describe the selection of a subset of this corpus for manual annotation of clinical entities and relationships. We describe an annotation methodology and report encouraging initial results of inter-annotator agreement. Comparisons are made between different text sub-genres, and between annotators with different skills.

  7. Project W-151 Tank 101-AZ Waste Retrieval System Year 2000 Compliance Assessment Project Plan

    Energy Technology Data Exchange (ETDEWEB)

    BUSSELL, J.H.

    1999-08-02

    This assessment describes the potential Year 2000 (Y2K) problems and describes the methods for achieving Y2K compliance for Project W-151, Tank 101-AZ Waste Retrieval System. The purpose of this assessment is to give an overview of the project. This document will not be updated and any dates contained in this document are estimates and may change. Two mixer pumps and instrumentation have been or are planned to be installed in waste tank 101-AZ to demonstrate solids mobilization. The information and experience gained during this process test will provide data for comparison with sludge mobilization prediction models and provide indication of the effects of mixer pump operation on an Aging Waste Facility tank. A limited description of system dates, functions, interfaces, potential Y2K problems, and date resolutions is presented. The project is presently on hold, and definitive design and procurement have been completed. This assessment will describe the methods, protocols, and practices to ensure that equipment and systems do not have Y2K problems.

  8. Solar Tutorial and Annotation Resource (STAR)

    Science.gov (United States)

    Showalter, C.; Rex, R.; Hurlburt, N. E.; Zita, E. J.

    2009-12-01

    We have written a software suite designed to facilitate solar data analysis by scientists, students, and the public, anticipating enormous datasets from future instruments. Our “STAR" suite includes an interactive learning section explaining 15 classes of solar events. Users learn software tools that exploit humans’ superior ability (over computers) to identify many events. Annotation tools include time slice generation to quantify loop oscillations, the interpolation of event shapes using natural cubic splines (for loops, sigmoids, and filaments) and closed cubic splines (for coronal holes). Learning these tools in an environment where examples are provided prepares new users to comfortably utilize annotation software with new data. Upon completion of our tutorial, users are presented with media of various solar events and asked to identify and annotate the images, to test their mastery of the system. Goals of the project include public input into the data analysis of very large datasets from future solar satellites, and increased public interest and knowledge about the Sun. In 2010, the Solar Dynamics Observatory (SDO) will be launched into orbit. SDO’s advancements in solar telescope technology will generate a terabyte per day of high-quality data, requiring innovation in data management. While major projects develop automated feature recognition software, so that computers can complete much of the initial event tagging and analysis, still, that software cannot annotate features such as sigmoids, coronal magnetic loops, coronal dimming, etc., due to large amounts of data concentrated in relatively small areas. Previously, solar physicists manually annotated these features, but with the imminent influx of data it is unrealistic to expect specialized researchers to examine every image that computers cannot fully process. A new approach is needed to efficiently process these data. Providing analysis tools and data access to students and the public have proven

  9. Assessing human rights impacts in corporate development projects

    Energy Technology Data Exchange (ETDEWEB)

    Salcito, Kendyl, E-mail: kendyl.salcito@unibas.ch [Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, P.O. Box, CH-4002 Basel (Switzerland); University of Basel, P.O. Box, CH-4003 Basel (Switzerland); NomoGaia, 1900 Wazee Street, Suite 303, Denver, CO 80202 (United States); NewFields, LLC, Denver, CO 80202 (United States); Utzinger, Jürg, E-mail: juerg.utzinger@unibas.ch [Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, P.O. Box, CH-4002 Basel (Switzerland); University of Basel, P.O. Box, CH-4003 Basel (Switzerland); Weiss, Mitchell G., E-mail: Mitchell-g.Weiss@unibas.ch [Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, P.O. Box, CH-4002 Basel (Switzerland); University of Basel, P.O. Box, CH-4003 Basel (Switzerland); Münch, Anna K., E-mail: annak.muench@gmail.com [Emerging Pathogens Institute, University of Florida, Gainesville, FL 32610 (United States); Singer, Burton H., E-mail: bhsinger@epi.ufl.edu [Emerging Pathogens Institute, University of Florida, Gainesville, FL 32610 (United States); Krieger, Gary R., E-mail: gkrieger@newfields.com [NewFields, LLC, Denver, CO 80202 (United States); Wielga, Mark, E-mail: wielga@nomogaia.org [NomoGaia, 1900 Wazee Street, Suite 303, Denver, CO 80202 (United States); NewFields, LLC, Denver, CO 80202 (United States)

    2013-09-15

    Human rights impact assessment (HRIA) is a process for systematically identifying, predicting and responding to the potential impact on human rights of a business operation, capital project, government policy or trade agreement. Traditionally, it has been conducted as a desktop exercise to predict the effects of trade agreements and government policies on individuals and communities. In line with a growing call for multinational corporations to ensure they do not violate human rights in their activities, HRIA is increasingly incorporated into the standard suite of corporate development project impact assessments. In this context, the policy world's non-structured, desk-based approaches to HRIA are insufficient. Although a number of corporations have commissioned and conducted HRIA, no broadly accepted and validated assessment tool is currently available. The lack of standardisation has complicated efforts to evaluate the effectiveness of HRIA as a risk mitigation tool, and has caused confusion in the corporate world regarding company duties. Hence, clarification is needed. The objectives of this paper are (i) to describe an HRIA methodology, (ii) to provide a rationale for its components and design, and (iii) to illustrate implementation of HRIA using the methodology in two selected corporate development projects—a uranium mine in Malawi and a tree farm in Tanzania. We found that as a prognostic tool, HRIA could examine potential positive and negative human rights impacts and provide effective recommendations for mitigation. However, longer-term monitoring revealed that recommendations were unevenly implemented, dependent on market conditions and personnel movements. This instability in the approach to human rights suggests a need for on-going monitoring and surveillance. -- Highlights: • We developed a novel methodology for corporate human rights impact assessment. • We piloted the methodology on two corporate projects—a mine and a plantation.

  10. The GATO gene annotation tool for research laboratories

    Directory of Open Access Journals (Sweden)

    A. Fujita

    2005-11-01

    Full Text Available Large-scale genome projects have generated a rapidly increasing number of DNA sequences. Therefore, development of computational methods to rapidly analyze these sequences is essential for progress in genomic research. Here we present an automatic annotation system for preliminary analysis of DNA sequences. The gene annotation tool (GATO is a Bioinformatics pipeline designed to facilitate routine functional annotation and easy access to annotated genes. It was designed in view of the frequent need of genomic researchers to access data pertaining to a common set of genes. In the GATO system, annotation is generated by querying some of the Web-accessible resources and the information is stored in a local database, which keeps a record of all previous annotation results. GATO may be accessed from everywhere through the internet or may be run locally if a large number of sequences are going to be annotated. It is implemented in PHP and Perl and may be run on any suitable Web server. Usually, installation and application of annotation systems require experience and are time consuming, but GATO is simple and practical, allowing anyone with basic skills in informatics to access it without any special training. GATO can be downloaded at [http://mariwork.iq.usp.br/gato/]. Minimum computer free space required is 2 MB.

  11. Quantitative Assessment of Implicit Environmental Impacts of Construction Projects

    Institute of Scientific and Technical Information of China (English)

    SHUAI Xiao-gen; LI Hui-qiang; TANG Li

    2009-01-01

    Assessment system of implicit environmental impacts was established including environmental impact indicator, resources consumption indicator and energy consumption indicator. The quantification of environmental impact indicators is based on the life cycle assessment system of the Society of Environmental Toxicology and Chemistry (SETAC) and the evaluation software BEES. Normalization reference values and weights of 12 categories of environmental impacts were identified, and the environmental impact indicators in the phases of raw material extraction, transportation, manufacturing, use and end of life were analyzed. By analyzing the environmental performance of a university refectory as a case study, it is demonstrated that human health, global warming and acidification are the first three environmental impacts in 12 categories. The total implicit environmental impact load per square meter of this project is 18.448×10~(-2) standard human equivalent weight. Moreover, 97.3% of total environmental impacts occur in the phase of raw material extraction.

  12. Indicators and beyond: Assessing the sustainability of transport projects

    DEFF Research Database (Denmark)

    Cornet, Yannick

    2016-01-01

    on the topic of sustainable transport indicator frameworks. Case study work draws upon extensive desktop-based analysis of impact assessment reports and other publically available material about real cases of large transport infrastructure appraisals. The HS2 high-speed rail (HSR) project appraisal in the UK...... of STIFs. The article identifies and describes a total of 21 ‘metacriteria’ that are grouped based on the framework function they are contributing to. Going beyond indicators, this article led to examining in more detail issues related to prioritising sustainability impacts, capturing trade...... toward a sustainable transport system will require strong support from decision-support processes and assessment tools that do not only adopt the language of sustainability, but fully integrate an explicit notion of sustainability in all of their conceptual, operational and procedural approaches...

  13. Willow Creek Wildlife Mitigation Project. Final Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-04-01

    Today`s notice announces BPA`s proposal to fund land acquisition or acquisition of a conservation easement and a wildlife management plan to protect and enhance wildlife habitat at the Willow Creek Natural Area in Eugene, Oregon. This action would provide partial mitigation for wildlife and wildlife habitat lost by the development of Federal hydroelectric projects in the Willamette River Basin. The project is consistent with BPA`s obligations under provisions of the Pacific Northwest Electric Power Planning and Conservation Act of 1980 as outlined by the Northwest Power Planning Council`s 1994 Columbia River Basin Fish and Wildlife Program. BPA has prepared an environmental assessment (DOE/EA-1023) evaluating the proposed project. Based on the analysis in the EA, BPA has determined that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an environmental impact statement (EIS) is not required and BPA is issuing this FONSI.

  14. Blue Creek Winter Range : Wildlife Mitigation Project : Final Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration; United States. Bureau of Indian Affairs; Spokane Tribe of the Spokane Reservation, Washington

    1994-11-01

    Bonneville Power Administration (BPA) proposes to fund that portion of the Washington Wildlife Agreement pertaining to the Blue Creek Winter Range Wildlife Mitigation Project (Project) in a cooperative effort with the Spokane Tribe, Upper Columbia United Tribes, and the Bureau of Indian Affairs (BIA). If fully implemented, the proposed action would allow the sponsors to protect and enhance 2,631 habitat units of big game winter range and riparian shrub habitat on 2,185 hectares (5,400 acres) of Spokane Tribal trust lands, and to conduct long term wildlife management activities within the Spokane Indian Reservation project area. This Final Environmental Assessment (EA) examines the potential environmental effects of securing land and conducting wildlife habitat enhancement and long term management activities within the boundaries of the Spokane Indian Reservation. Four proposed activities (habitat protection, habitat enhancement, operation and maintenance, and monitoring and evaluation) are analyzed. The proposed action is intended to meet the need for mitigation of wildlife and wildlife habitat adversely affected by the construction of Grand Coulee Dam and its reservoir.

  15. Geohazard assessment lifecycle for a natural gas pipeline project

    Science.gov (United States)

    Lekkakis, D.; Boone, M. D.; Strassburger, E.; Li, Z.; Duffy, W. P.

    2015-09-01

    the assessment, further exploration was proposed. In cases where rerouting was constrained, mitigation via structural measures was proposed. This paper further discusses the cost, schedule and resource challenges of planning and executing such a large-scale geotechnical investigation, the interfaces between the various disciplines involved during the assessment, the innovative tools employed for the field mapping, the classifications developed for mapping landslides, karst geology, and trench excavatability, determining liquefaction stretches and the process for the site localization of the Above Ground Installations (AGI). It finally discusses the objectives of the FEED study in terms of providing a route, a ± 20% project cost estimate and a schedule, and the additional engineering work foreseen to take place in the detailed engineering phase of the project.

  16. Health Impact Assessment of an oil drilling project in California

    Directory of Open Access Journals (Sweden)

    Lindsay C. McCallum

    2016-04-01

    Full Text Available Objectives: The Health Impact Assessment (HIA was conducted to evaluate the potential community health implications of a proposed oil drilling and production project in Hermosa Beach, California. The HIA considered 17 determinants of health that fell under 6 major categories (i.e., air quality, water and soil quality, upset conditions, noise and light emissions, traffic, and community livability. Material and Methods: This paper attempts to address some of the gaps within the HIA practice by presenting the methodological approach and results of this transparent, comprehensive HIA; specifically, the evaluation matrix and decision-making framework that have been developed for this HIA and form the basis of the evaluation and allow for a clear conclusion to be reached in respect of any given health determinant (i.e., positive, negative, neutral. Results: There is a number of aspects of the project that may positively influence health (e.g., increased education funding, ability to enhance green space, and at the same time there have been potential negative effects identified (e.g., odor, blowouts, property values. Except for upset conditions, the negative health outcomes have been largely nuisance-related (e.g., odor, aesthetics without irreversible health impacts. The majority of the health determinants, that had been examined, have revealed that the project would have no substantial effect on the health of the community. Conclusions: Using the newly developed methodology and based on established mitigation measures and additional recommendations provided in the HIA, the authors have concluded that the project will have no substantial effect on community health. This approach and methodology will assist practitioners, stakeholders and decision-makers in advancing the HIA as a useful, reproducible, and informative tool.

  17. The ENCOAL Mild Coal Gasification Project, A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2002-03-15

    This report is a post-project assessment of the ENCOAL{reg_sign} Mild Coal Gasification Project, which was selected under Round III of the U.S. Department of Energy (DOE) Clean Coal Technology (CCT) Demonstration Program. The CCT Demonstration Program is a government and industry cofunded technology development effort to demonstrate a new generation of innovative coal utilization processes in a series of commercial-scale facilities. The ENCOAL{reg_sign} Corporation, a wholly-owned subsidiary of Bluegrass Coal Development Company (formerly SMC Mining Company), which is a subsidiary of Ziegler Coal Holding Company, submitted an application to the DOE in August 1989, soliciting joint funding of the project in the third round of the CCT Program. The project was selected by DOE in December 1989, and the Cooperative Agreement (CA) was approved in September 1990. Construction, commissioning, and start-up of the ENCOAL{reg_sign} mild coal gasification facility was completed in June 1992. In October 1994, ENCOAL{reg_sign} was granted a two-year extension of the CA with the DOE, that carried through to September 17, 1996. ENCOAL{reg_sign} was then granted a six-month, no-cost extension through March 17, 1997. Overall, DOE provided 50 percent of the total project cost of $90,664,000. ENCOAL{reg_sign} operated the 1,000-ton-per-day mild gasification demonstration plant at Triton Coal Company's Buckskin Mine near Gillette, Wyoming, for over four years. The process, using Liquids From Coal (LFC{trademark}) technology originally developed by SMC Mining Company and SGI International, utilizes low-sulfur Powder River Basin (PRB) coal to produce two new fuels, Process-Derived Fuel (PDF{trademark}) and Coal-Derived Liquids (CDL{trademark}). The products, as alternative fuel sources, are capable of significantly lowering current sulfur emissions at industrial and utility boiler sites throughout the nation thus reducing pollutants causing acid rain. In support of this overall

  18. Semantic annotation of clinical events for generating a problem list.

    Science.gov (United States)

    Mowery, Danielle L; Jordan, Pamela; Wiebe, Janyce; Harkema, Henk; Dowling, John; Chapman, Wendy W

    2013-01-01

    We present a pilot study of an annotation schema representing problems and their attributes, along with their relationship to temporal modifiers. We evaluated the ability for humans to annotate clinical reports using the schema and assessed the contribution of semantic annotations in determining the status of a problem mention as active, inactive, proposed, resolved, negated, or other. Our hypothesis is that the schema captures semantic information useful for generating an accurate problem list. Clinical named entities such as reference events, time points, time durations, aspectual phase, ordering words and their relationships including modifications and ordering relations can be annotated by humans with low to moderate recall. Once identified, most attributes can be annotated with low to moderate agreement. Some attributes - Experiencer, Existence, and Certainty - are more informative than other attributes - Intermittency and Generalized/Conditional - for predicting a problem mention's status. Support vector machine outperformed Naïve Bayes and Decision Tree for predicting a problem's status.

  19. Improving microbial genome annotations in an integrated database context.

    Directory of Open Access Journals (Sweden)

    I-Min A Chen

    Full Text Available Effective comparative analysis of microbial genomes requires a consistent and complete view of biological data. Consistency regards the biological coherence of annotations, while completeness regards the extent and coverage of functional characterization for genomes. We have developed tools that allow scientists to assess and improve the consistency and completeness of microbial genome annotations in the context of the Integrated Microbial Genomes (IMG family of systems. All publicly available microbial genomes are characterized in IMG using different functional annotation and pathway resources, thus providing a comprehensive framework for identifying and resolving annotation discrepancies. A rule based system for predicting phenotypes in IMG provides a powerful mechanism for validating functional annotations, whereby the phenotypic traits of an organism are inferred based on the presence of certain metabolic reactions and pathways and compared to experimentally observed phenotypes. The IMG family of systems are available at http://img.jgi.doe.gov/.

  20. Life Cycle Assessment of Biochar - EuroChar Project

    Science.gov (United States)

    Rack, M.; Woods, J.

    2012-04-01

    One of the most significant challenges faced by modern-day society is that of global warming. An exclusive focus on reducing the greenhouse gas (GHG) emissions will not suffice and therefore technologies capable of removing CO2 directly from the atmosphere at low or minimal cost are gaining increased attention. The production and use of biochar is an example of such an emerging mitigation strategy. However, as with any novel product, process and technology it is vital to conduct an assessment of the entire life cycle in order to determine the environmental impacts of the new concept in addition to analysing the other sustainability criteria. Life Cycle Assessment (LCA), standardized by ISO (2006a), is an example of a tool used to calculate the environmental impacts of a product or process. Imperial College London will follow the guidelines and recommendations of the ISO 14040 series (ISO 2002, ISO 2006a-b) and the International Life Cycle Data System (ILCD) Handbook (EC JRC IES, 2010a-e), and will use the SimaPro software to conduct a LCA of the biochar supply chains for the EuroChar project. EuroChar ('biochar for Carbon sequestration and large-scale removal of GHG from the atmosphere') is a project funded by the European Commission under its Seventh Framework Programme (FP7). EuroChar aims to investigate and reduce uncertainties around the impacts of, and opportunities for, biochar and, in particular, explore a possible introduction into modern agricultural systems in Europe, thereby moving closer to the determination of the true potential of biochar. EuroChar will use various feedstocks, ranging from wheat straw to olive residues and poplar, as feedstocks for biochar production and will focus on two conversion technologies, Hydrothermal Carbonization (HTC) and Thermochemical Carbonization (TC), followed by the application of the biochar in crop-growth field trials in England, France and Italy. In April 2012, the EuroChar project will be at its halfway mark and

  1. Solving the Problem: Genome Annotation Standards before the Data Deluge

    Science.gov (United States)

    Klimke, William; O'Donovan, Claire; White, Owen; Brister, J. Rodney; Clark, Karen; Fedorov, Boris; Mizrachi, Ilene; Pruitt, Kim D.; Tatusova, Tatiana

    2011-01-01

    The promise of genome sequencing was that the vast undiscovered country would be mapped out by comparison of the multitude of sequences available and would aid researchers in deciphering the role of each gene in every organism. Researchers recognize that there is a need for high quality data. However, different annotation procedures, numerous databases, and a diminishing percentage of experimentally determined gene functions have resulted in a spectrum of annotation quality. NCBI in collaboration with sequencing centers, archival databases, and researchers, has developed the first international annotation standards, a fundamental step in ensuring that high quality complete prokaryotic genomes are available as gold standard references. Highlights include the development of annotation assessment tools, community acceptance of protein naming standards, comparison of annotation resources to provide consistent annotation, and improved tracking of the evidence used to generate a particular annotation. The development of a set of minimal standards, including the requirement for annotated complete prokaryotic genomes to contain a full set of ribosomal RNAs, transfer RNAs, and proteins encoding core conserved functions, is an historic milestone. The use of these standards in existing genomes and future submissions will increase the quality of databases, enabling researchers to make accurate biological discoveries. PMID:22180819

  2. Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

    Directory of Open Access Journals (Sweden)

    Childs Kevin L

    2010-11-01

    Full Text Available Abstract Background A goal of the Bovine Genome Database (BGD; http://BovineGenome.org has been to support the Bovine Genome Sequencing and Analysis Consortium (BGSAC in the annotation and analysis of the bovine genome. We were faced with several challenges, including the need to maintain consistent quality despite diversity in annotation expertise in the research community, the need to maintain consistent data formats, and the need to minimize the potential duplication of annotation effort. With new sequencing technologies allowing many more eukaryotic genomes to be sequenced, the demand for collaborative annotation is likely to increase. Here we present our approach, challenges and solutions facilitating a large distributed annotation project. Results and Discussion BGD has provided annotation tools that supported 147 members of the BGSAC in contributing 3,871 gene models over a fifteen-week period, and these annotations have been integrated into the bovine Official Gene Set. Our approach has been to provide an annotation system, which includes a BLAST site, multiple genome browsers, an annotation portal, and the Apollo Annotation Editor configured to connect directly to our Chado database. In addition to implementing and integrating components of the annotation system, we have performed computational analyses to create gene evidence tracks and a consensus gene set, which can be viewed on individual gene pages at BGD. Conclusions We have provided annotation tools that alleviate challenges associated with distributed annotation. Our system provides a consistent set of data to all annotators and eliminates the need for annotators to format data. Involving the bovine research community in genome annotation has allowed us to leverage expertise in various areas of bovine biology to provide biological insight into the genome sequence.

  3. Assessing soil and groundwater contamination in a metropolitan redevelopment project.

    Science.gov (United States)

    Yun, Junki; Lee, Ju Young; Khim, Jeehyeong; Ji, Won Hyun

    2013-08-01

    The purpose of this study was to assess contaminated soil and groundwater for the urban redevelopment of a rapid transit railway and a new mega-shopping area. Contaminated soil and groundwater may interfere with the progress of this project, and residents and shoppers may be exposed to human health risks. The study area has been remediated after application of first remediation technologies. Of the entire area, several sites were still contaminated by waste materials and petroleum. For zinc (Zn) contamination, high Zn concentrations were detected because waste materials were disposed in the entire area. For petroleum contamination, high total petroleum hydrocarbon (TPH) and hydrocarbon degrading microbe concentrations were observed at the depth of 7 m because the underground petroleum storage tank had previously been located at this site. Correlation results suggest that TPH (soil) concentration is still related with TPH (groundwater) concentration. The relationship is taken into account in the Spearman coefficient (α).

  4. Advanced Seismic Probabilistic Risk Assessment Demonstration Project Plan

    Energy Technology Data Exchange (ETDEWEB)

    Coleman, Justin [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2014-09-01

    Idaho National Laboratories (INL) has an ongoing research and development (R&D) project to remove excess conservatism from seismic probabilistic risk assessments (SPRA) calculations. These risk calculations should focus on providing best estimate results, and associated insights, for evaluation and decision-making. This report presents a plan for improving our current traditional SPRA process using a seismic event recorded at a nuclear power plant site, with known outcomes, to improve the decision making process. SPRAs are intended to provide best estimates of the various combinations of structural and equipment failures that can lead to a seismic induced core damage event. However, in general this approach has been conservative, and potentially masks other important events (for instance, it was not the seismic motions that caused the Fukushima core melt events, but the tsunami ingress into the facility).

  5. Sustainability assessment of renewable energy projects: research report

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2001-07-01

    This report describes the results of a study that examined the development of an appraisal framework for renewable energy projects in the UK. The aim was to develop a framework that reflected the quality of life capital approach and could take into account social, economic and environmental effects at a range of different scales. The report describes in some detail: the steps leading to the definition, refinement and testing of the appraisal framework; the assessment methodology; baseline characterisation and evaluation; and application. Three fictional case studies (wind farm in a remote upland rural area, energy recovery facility in an urban fringe location and wood fuelled renewable energy plant in less remote rural area) are used to test the approach.

  6. Environmental assessment of the projected uses for geopressured waters

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, J.S.; Manning, J.A.; Meriwether, J.

    1977-11-16

    An assessment of possible environmental effects of the use of geopressured water of the Texas and Louisiana Gulf Coast has been made. The uses considered include generation of electric power, production of low pressure steam for process heat and the direct use of the hot water for space heating. Based upon the projected uses, the direct and indirect emissions are estimated and the impact of these emissions upon the environment are discussed. The possible impacts of the production of large volumes of geopressured fluids are also considered in terms of possibility of subsidence and earthquakes. A summary of available analyses of Gulf Coast deep waters is listed as a guide for estimating expected emissions. Primary environmental problems are identified as waste brine disposal, accidental releases of brines, and subsidence. Minor problems such as cooling tower blowdown streams, noncondensable gas emissions, wind drift from exhaust plumes, noise levels, and construction activities are considered.

  7. Lithium Resources and Production: Critical Assessment and Global Projections

    Directory of Open Access Journals (Sweden)

    Steve H. Mohr

    2012-03-01

    Full Text Available This paper critically assesses if accessible lithium resources are sufficient for expanded demand due to lithium battery electric vehicles. The ultimately recoverable resources (URR of lithium globally were estimated at between 19.3 (Case 1 and 55.0 (Case 3 Mt Li; Best Estimate (BE was 23.6 Mt Li. The Mohr 2010 model was modified to project lithium supply. The Case 1 URR scenario indicates sufficient lithium for a 77% maximum penetration of lithium battery electric vehicles in 2080 whereas supply is adequate to beyond 2200 in the Case 3 URR scenario. Global lithium demand approached a maximum of 857 kt Li/y, with a 100% penetration of lithium vehicles, 3.5 people per car and 10 billion population.

  8. 75 FR 10500 - Environmental Assessment Prepared for Proposed Cape Wind Energy Project in Nantucket Sound, MA

    Science.gov (United States)

    2010-03-08

    ... Minerals Management Service Environmental Assessment Prepared for Proposed Cape Wind Energy Project in... review and comment of an EA and Draft FONNSI prepared by MMS for the Cape Wind Energy Project proposed... Environmental Impact Statement (FEIS) for the Cape Wind Energy Project. The FEIS assessed the...

  9. 75 FR 23798 - Environmental Assessment Prepared for Proposed Cape Wind Energy Project in Nantucket Sound...

    Science.gov (United States)

    2010-05-04

    ... Minerals Management Service Environmental Assessment Prepared for Proposed Cape Wind Energy Project in...), announces the availability of an EA and FONNSI for the Cape Wind Energy Project proposed for Nantucket Sound... Impact Statement (FEIS) for the Cape Wind Energy Project. The FEIS assessed the physical, biological,...

  10. Results of Needs Assessments Related to Citizen Science Projects

    Science.gov (United States)

    Buxner, Sanlyn; Bracey, Georgia; Glushko, Anna; Bakerman, Maya; Gay, Pamela L.; CosmoQuest Team

    2017-01-01

    The CosmoQuest Virtual Research Facility invites the public and classrooms to participate in NASA Science Mission Directorate related research that leads to publishable results and data catalogues. One of the main goals of the project is to support professional scientists in doing science and the general public--including parents, children, teachers, and students--in learning and doing science. Through the effort, the CosmoQuest team is developing a variety of supports and opportunities to support the doing and teaching of science. To inform our efforts, we have implemented a set of needs surveys to assess the needs of our different audiences. These surveys are being used to understand the interests, motivations, resources, challenges and demographics of our growing CosmoQuest community and others interested in engaging in citizen science projects. The surveys include those for teachers, parents, adult learners, planetarium professionals, subject matter experts (SMEs), and the general public. We will share the results of these surveys and discuss the implications of the results for broader education and outreach programs.

  11. Statistical mechanics of ontology based annotations

    CERN Document Server

    Hoyle, David C

    2016-01-01

    We present a statistical mechanical theory of the process of annotating an object with terms selected from an ontology. The term selection process is formulated as an ideal lattice gas model, but in a highly structured inhomogeneous field. The model enables us to explain patterns recently observed in real-world annotation data sets, in terms of the underlying graph structure of the ontology. By relating the external field strengths to the information content of each node in the ontology graph, the statistical mechanical model also allows us to propose a number of practical metrics for assessing the quality of both the ontology, and the annotations that arise from its use. Using the statistical mechanical formalism we also study an ensemble of ontologies of differing size and complexity; an analysis not readily performed using real data alone. Focusing on regular tree ontology graphs we uncover a rich set of scaling laws describing the growth in the optimal ontology size as the number of objects being annotate...

  12. MEETING: Chlamydomonas Annotation Jamboree - October 2003

    Energy Technology Data Exchange (ETDEWEB)

    Grossman, Arthur R

    2007-04-13

    Shotgun sequencing of the nuclear genome of Chlamydomonas reinhardtii (Chlamydomonas throughout) was performed at an approximate 10X coverage by JGI. Roughly half of the genome is now contained on 26 scaffolds, all of which are at least 1.6 Mb, and the coverage of the genome is ~95%. There are now over 200,000 cDNA sequence reads that we have generated as part of the Chlamydomonas genome project (Grossman, 2003; Shrager et al., 2003; Grossman et al. 2007; Merchant et al., 2007); other sequences have also been generated by the Kasuza sequence group (Asamizu et al., 1999; Asamizu et al., 2000) or individual laboratories that have focused on specific genes. Shrager et al. (2003) placed the reads into distinct contigs (an assemblage of reads with overlapping nucleotide sequences), and contigs that group together as part of the same genes have been designated ACEs (assembly of contigs generated from EST information). All of the reads have also been mapped to the Chlamydomonas nuclear genome and the cDNAs and their corresponding genomic sequences have been reassembled, and the resulting assemblage is called an ACEG (an Assembly of contiguous EST sequences supported by genomic sequence) (Jain et al., 2007). Most of the unique genes or ACEGs are also represented by gene models that have been generated by the Joint Genome Institute (JGI, Walnut Creek, CA). These gene models have been placed onto the DNA scaffolds and are presented as a track on the Chlamydomonas genome browser associated with the genome portal (http://genome.jgi-psf.org/Chlre3/Chlre3.home.html). Ultimately, the meeting grant awarded by DOE has helped enormously in the development of an annotation pipeline (a set of guidelines used in the annotation of genes) and resulted in high quality annotation of over 4,000 genes; the annotators were from both Europe and the USA. Some of the people who led the annotation initiative were Arthur Grossman, Olivier Vallon, and Sabeeha Merchant (with many individual

  13. Global assessment of nitrogen fertilizer: The SCOPE/IGBP Nitrogen Fertilizer Rapid Assessment Project

    Institute of Scientific and Technical Information of China (English)

    Arvin R. Mosier; J. Keith Syers; John R. Freney

    2005-01-01

    Nitrogen (N) availability is a key role in food and fiber production. Providing plant-available N through synthetic fertilizer in the 20th and early 21st century has been a major contributor to the increased production required to feed and clothe the growing human population.To continue to meet the global demands and to minimize environmental problems, significant improvements are needed in the efficiency with which fertilizer N is utilized within production systems. There are still major uncertainties regarding the fate of fertilizer N added to agricultural soils and the potential for reducing losses to the environment. Enhancing the technical and economic efficiency of fertilizer N is seen to promote a favorable situation for both agricultural production and the environment, and this has provided much of the impetus for a new N fertilizer project.To address this important issue, a rapid assessment project on N fertilizer (NFRAP) was conducted by SCOPE (the Scientific Committee on Problems of the Environment) during late 2003 and early 2004. This was the first formal project of the International Nitrogen Initiative (INI). As part of this assessment, a successful international workshop was held in Kampala, Uganda on 12 -16 January, 2004. This workshop brought together scientists from around the world to assess the fate of synthetic fertilizer N in the context of overall N inputs to agricultural systems, with a view to enhancing the efficiency of N use and reducing negative impacts on the environment.Regionalization of the assessment highlighted the problems of too little N for crop production to meet the nutrient requirements of sub-Saharan Africa and the oversupply of N in the major rice-growing areas of China. The results of the assessment are presented in a book (SCOPE 65)which is now available to provide a basis for further discussions on N fertilizer.

  14. Environmental assessment: Kotzebue Wind Installation Project, Kotzebue, Alaska

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-05-01

    The DOE is proposing to provide financial assistance to the Kotzebue Electric Association to expand its existing wind installation near Kotzebue, Alaska. Like many rural Alaska towns, Kotzebue uses diesel-powered generators to produce its electricity, the high cost of which is currently subsidized by the Alaska State government. In an effort to provide a cost effective and clean source of electricity, reduce dependence on diesel fuel, and reduce air pollutants, the DOE is proposing to fund an experimental wind installation to test commercially available wind turbines under Arctic conditions. The results would provide valuable information to other Alaska communities experiencing similar dependence on diesel-powered generators. The environmental assessment for the proposed wind installation assessed impacts to biological resources, land use, electromagnetic interference, coastal zone, air quality, cultural resources, and noise. It was determined that the project does not constitute a major Federal action significantly affecting the quality of the human environment. Therefore, the preparation of an environmental impact statement is not required, and DOE has issued a Finding of No Significant Impact.

  15. Bulgarian sense-annotated corpus – between the tradition and novelty

    Directory of Open Access Journals (Sweden)

    Svetla Koeva

    2015-11-01

    Full Text Available Bulgarian sense-annotated corpus – between the tradition and novelty The Bulgarian Sense-annotated Corpus (BulSemCor is compiled according to the general methodology established by the SemCor project. It is a subset of the Brown Corpus of Bulgarian semantically annotated with a corresponding synonym set (synset in the Bulgarian wordnet. Unlike the bulk of sense-annotated corpora where only (sets of content words are annotated, in BulSemCor each lexical unit has been assigned a sense. The main contributions achieved in the work on BulSemCor are briefly decides in the presented paper: definition of an annotation schema, compilation of an input corpus, development of a sense-annotated corpus, Bulgarian wordnet enlargement.

  16. California Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project--shallow aquifer assessment

    Science.gov (United States)

    ,

    2013-01-01

    The California State Water Resources Control Board’s (SWRCB) GAMA Program is a comprehensive assessment of statewide groundwater quality in California. From 2004 to 2012, the GAMA Program’s Priority Basin Project focused on assessing groundwater resources used for public drinking-water supplies. More than 2,000 public-supply wells were sampled by U.S. Geological Survey (USGS) for this effort. Starting in 2012, the GAMA Priority Basin Project began an assessment of water resources in shallow aquifers in California. These shallow aquifers provide water for domestic and small community-supply wells, which are often drilled to shallower depths in the groundwater system than public-supply wells. Shallow aquifers are of interest because shallow groundwater may respond more quickly and be more susceptible to contamination from human activities at the land surface, than the deeper aquifers. The SWRCB’s GAMA Program was developed in response to the Groundwater Quality Monitoring Act of 2001 (Water Code sections 10780-10782.3): a public mandate to assess and monitor the quality of groundwater resources used for drinking-water supplies, and to increase the availability of information about groundwater quality to the public. The U.S. Geological Survey is the technical lead of the Priority Basin Project. Stewardship of California’s groundwater resources is a responsibility shared between well owners, communities, and the State. Participants and collaborators in the GAMA Program include Regional Water Quality Control Boards, Department of Water Resources, Department of Public Health, local and regional groundwater management entities, county and local water agencies, community groups, and private citizens. Well-owner participation in the GAMA Program is entirely voluntary.

  17. Mesotext. Framing and exploring annotations

    NARCIS (Netherlands)

    Boot, P.; Boot, P.; Stronks, E.

    2007-01-01

    From the introduction: Annotation is an important item on the wish list for digital scholarly tools. It is one of John Unsworth’s primitives of scholarship (Unsworth 2000). Especially in linguistics,a number of tools have been developed that facilitate the creation of annotations to source material

  18. How to scientifically assess a restoration project: a case study

    Science.gov (United States)

    Alvarez de Buergo, M.; Fort, R.; Freire, D. M.; Lopez-Arce, P.; Vazquez-Calvo, C.

    2012-04-01

    Commonly, it is said that there is lack of communication among scientists, conservators, restorers, project managers and architects. But sometimes this communication flows, and we can find enormous benefits from and for all the participating agents. This is the case we present in this work, in which technical agents in charge of the restoration of a building, asked for some scientific advice to perform the restoration of a heritage building. The results were successful and fantastic for both of them, in terms of one part asking for consultation and the other answering to the demands and resolving real problems. This is the case of a marvellous Renaissance building (Medinaceli Dukes palace, 15th-16th centuries) in the central area of Spain (Cogolludo, Guadalajara). Focused on the restoration project, we were asked for consultancy on how to solve matters like the assessment of the already fixed in project cleaning method for the stone façades, the efficacy and durability methods for some conservation products to be applied, the presence or not of a patina on the stone; the viability of using some restoration mortars, and the origin of some efflorescences that came out just after placed in the building a restoration rendering mortar. Responses to these matters were answered by performing tests both in the lab and on site in the building. The efficiency and effects on stone of the blasting cleaning method was assessed by first analysing the nature and thickness of the surface deposits to be removed (SEM-EDS analyses); secondly, roughness and colour measurements were performed, and thirdly, SEM-EDS analyses were carried out again to determine whether the cleaning method was able to remove part of the surface deposits, completely, or even part of the stone substrate. Some conservation products were tested on stone specimens, both their efficacy and their durability, concluding that it was better not to apply any of them. A patina was found on the stone façade under SEM

  19. Collective dynamics of social annotation

    CERN Document Server

    Cattuto, Ciro; Baldassarri, Andrea; Schehr, G; Loreto, Vittorio

    2009-01-01

    The enormous increase of popularity and use of the WWW has led in the recent years to important changes in the ways people communicate. An interesting example of this fact is provided by the now very popular social annotation systems, through which users annotate resources (such as web pages or digital photographs) with text keywords dubbed tags. Understanding the rich emerging structures resulting from the uncoordinated actions of users calls for an interdisciplinary effort. In particular concepts borrowed from statistical physics, such as random walks, and the complex networks framework, can effectively contribute to the mathematical modeling of social annotation systems. Here we show that the process of social annotation can be seen as a collective but uncoordinated exploration of an underlying semantic space, pictured as a graph, through a series of random walks. This modeling framework reproduces several aspects, so far unexplained, of social annotation, among which the peculiar growth of the size of the...

  20. Social impact assessment of the proposed Dodds-RoundHill coal gasification project : project report : executive summary

    Energy Technology Data Exchange (ETDEWEB)

    Parkins, J.R. (ed.)

    2009-07-01

    A public disclosure document was released for a proposed Dodds-RoundHill coal gasification project in January 2007, and the project was placed on hold in 2008 given some uncertainty around its future. However, there was a general sense that a project of this nature would be proposed for this coal-rich region at some point in the future. This report presented the results of a project completed by 14 graduate and undergraduate students in a social impact assessment course in 2009 at the University of Alberta. The purpose of the project was to learn specific concepts and methods for social impact assessment by undertaking such an assessment for the proposed Dodds-RoundHill coal gasification project, located southeast of Edmonton, Alberta. The 4 major components of a social impact assessment include scoping of relevant social indicators; social impacts within municipalities; social impacts within the farming region; and a comparative case study of social impacts. All of the research participants indicated that the project would have an impact on their community.

  1. PECULIARITIES OF ASSESSMENT AND RISK MANAGEMENT IN INNOVATIVE PROJECTS

    Directory of Open Access Journals (Sweden)

    Victor V. Guzhov

    2014-01-01

    Full Text Available The methodological and methodicalbases of risk management in innovativeprojects. Classification of risks. Types of risks depending on the stage of realizationof the innovative project. Investigated thefactors contributing to the emergence ofrisk situations. The basic techniques of risk management of innovation projects.Proposed criteria for the choice of the innovative project to implement in the realsector of the economy.

  2. Assessing corporate project impacts in changeable contexts: A human rights perspective

    Energy Technology Data Exchange (ETDEWEB)

    Salcito, Kendyl, E-mail: kendyl.salcito@unibas.ch [Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, P.O. Box, CH-4002 Basel (Switzerland); University of Basel, P.O. Box, CH-4003 Basel (Switzerland); NomoGaia, 1900 Wazee Street, Suite 303, Denver, CO 80202 (United States); NewFields, LLC, Denver, CO 80202 (United States); Singer, Burton H., E-mail: bhsinger@epi.ufl.edu [Emerging Pathogens Institute, University of Florida, Gainesville, FL 32610 (United States); Krieger, Gary R., E-mail: gkrieger@newfields.com [NewFields, LLC, Denver, CO 80202 (United States); Weiss, Mitchell G., E-mail: mitchell-g.weiss@unibas.ch [Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, P.O. Box, CH-4002 Basel (Switzerland); University of Basel, P.O. Box, CH-4003 Basel (Switzerland); Wielga, Mark, E-mail: wielga@nomogaia.org [NomoGaia, 1900 Wazee Street, Suite 303, Denver, CO 80202 (United States); NewFields, LLC, Denver, CO 80202 (United States); Utzinger, Jürg, E-mail: juerg.utzinger@unibas.ch [Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, P.O. Box, CH-4002 Basel (Switzerland); University of Basel, P.O. Box, CH-4003 Basel (Switzerland)

    2014-07-01

    Project-level impact assessment was originally conceived as a snapshot taken in advance of project implementation, contrasting current conditions with a likely future scenario involving a variety of predicted impacts. Current best practice guidance has encouraged a shift towards longitudinal assessments from the pre-project stage through the implementation and operating phases. Experience and study show, however, that assessment of infrastructure-intensive projects rarely endures past the project's construction phase. Negative consequences for environmental, social and health outcomes have been documented. Such consequences clarify the pressing need for longitudinal assessment in each of these domains, with human rights impact assessment (HRIA) as an umbrella over, and critical augmentation of, environmental, social and health assessments. Project impacts on human rights are more closely linked to political, economic and other factors beyond immediate effects of a company's policy and action throughout the project lifecycle. Delineating these processes requires an adequate framework, with strategies for collecting longitudinal data, protocols that provide core information for impact assessment and guidance for adaptive mitigation strategies as project-related effects change over time. This article presents general principles for the design and implementation of sustained, longitudinal HRIA, based on experience assessing and responding to human rights impact in a uranium mining project in Malawi. The case study demonstrates the value of longitudinal assessment both for limiting corporate risk and improving human welfare. - Graphical abstract: Assessing changes in human rights condition as affected by both project and context, over time. - Highlights: • Corporate capital projects affect human rights in myriad ways. • Ongoing, longitudinal impact assessment techniques are needed. • We present an approach for conducting longitudinal human rights impact

  3. DOE Hydropower Program biennial report 1990--1991 (with updated annotated bibliography)

    Energy Technology Data Exchange (ETDEWEB)

    Chappell, J.R.; Rinehart, B.N.; Sommers, G.L. (Idaho National Engineering Lab., Idaho Falls, ID (United States)); Sale, M.J. (Oak Ridge National Lab., TN (United States))

    1991-07-01

    This report summarizes the activities of the US Department of Energy's (DOE) Hydropower Program for fiscal years 1990 and 1991, and provides an annotated bibliography of research, engineering, operations, regulations, and costs of projects pertinent to hydropower development. The Hydropower Program is organized as follows: background (including Technology Development and Engineering Research and Development); Resource Assessment; National Energy Strategy; Technology Transfer; Environmental Research; and, the bibliography discusses reports written by both private and non-Federal Government sectors. Most reports are available from the National Technical Information Service. 5 figs., 2 tabs.

  4. National Assessment of Oil and Gas Project - San Juan Basin Province (022) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  5. National Assessment of Oil and Gas Project - Hanna, Laramie, Shirley Basins Province (030) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  6. National Assessment of Oil and Gas Project Bighorn Basin (5034) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  7. National Assessment of Oil and Gas Project - Florida Peninsula Province (050) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  8. National Assessment of Oil and Gas Project - San Joaquin Basin Province (010) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  9. National Assessment of Oil and Gas Project - Wind River Basin Province (035) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  10. National Assessment of Oil and Gas Project - Eastern Oregon-Washington Province (005) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  11. National Assessment of Oil and Gas Project - Sacramento Basin Province (009) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  12. National Assessment of Oil and Gas Project Anadarko Basin Province (058) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  13. National Assessment of Oil and Gas Project - Black Warrior Basin Province (065) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  14. National Assessment of Oil and Gas Project - Williston Basin Province (031) Total Petroleum System

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  15. National Assessment of Oil and Gas Project - Southwestern Wyoming Province (037) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  16. National Assessment of Oil and Gas Project - Denver Basin Province (039) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  17. National Assessment of Oil and Gas Project - Yukon Flats Tertiary Composite (002) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  18. National Assessment of Oil and Gas Project - Uinta-Piceance Province (020) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  19. National Assessment of Oil and Gas Project - Eastern Great Basin Province (019) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  20. National Assessment of Oil and Gas Project - Powder River Basin Province (033) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  1. National Assessment of Oil and Gas Project - Western Oregon-Washington Province (004) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  2. National Assessment of Oil and Gas Project - Michigan Basin Province (063) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  3. National Assessment of Oil and Gas Project - Wyoming Thrust Belt Province (036) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  4. National Assessment of Oil and Gas Project - Appalachian Basin Province (067) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  5. National Assessment of Oil and Gas Project - Illinois Basin Province (064) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  6. Water Resource Inventory and Assessment (WRIA) - Iowa Corridor Project Area (Port Louisa NWR)

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This Water Resource Inventory and Assessment (WRIA) Summary Report for Iowa Corridor Project Area describes current hydrologic information, provides an assessment of...

  7. Sentiment Analysis of Document Based on Annotation

    CERN Document Server

    Shukla, Archana

    2011-01-01

    I present a tool which tells the quality of document or its usefulness based on annotations. Annotation may include comments, notes, observation, highlights, underline, explanation, question or help etc. comments are used for evaluative purpose while others are used for summarization or for expansion also. Further these comments may be on another annotation. Such annotations are referred as meta-annotation. All annotation may not get equal weightage. My tool considered highlights, underline as well as comments to infer the collective sentiment of annotators. Collective sentiments of annotators are classified as positive, negative, objectivity. My tool computes collective sentiment of annotations in two manners. It counts all the annotation present on the documents as well as it also computes sentiment scores of all annotation which includes comments to obtain the collective sentiments about the document or to judge the quality of document. I demonstrate the use of tool on research paper.

  8. Meta-Assessment in a Project-Based Systems Engineering Course

    Science.gov (United States)

    Wengrowicz, Niva; Dori, Yehudit Judy; Dori, Dov

    2017-01-01

    Project-based learning (PBL) facilitates significant learning, but it poses a major assessment challenge for assessing individual content knowledge. We developed and implemented an assessment approach and tool for a mandatory undergraduate systems engineering PBL-based course. We call this type of assessment "student-oriented"…

  9. Metagenomic gene annotation by a homology-independent approach

    Energy Technology Data Exchange (ETDEWEB)

    Froula, Jeff; Zhang, Tao; Salmeen, Annette; Hess, Matthias; Kerfeld, Cheryl A.; Wang, Zhong; Du, Changbin

    2011-06-02

    Fully understanding the genetic potential of a microbial community requires functional annotation of all the genes it encodes. The recently developed deep metagenome sequencing approach has enabled rapid identification of millions of genes from a complex microbial community without cultivation. Current homology-based gene annotation fails to detect distantly-related or structural homologs. Furthermore, homology searches with millions of genes are very computational intensive. To overcome these limitations, we developed rhModeller, a homology-independent software pipeline to efficiently annotate genes from metagenomic sequencing projects. Using cellulases and carbonic anhydrases as two independent test cases, we demonstrated that rhModeller is much faster than HMMER but with comparable accuracy, at 94.5percent and 99.9percent accuracy, respectively. More importantly, rhModeller has the ability to detect novel proteins that do not share significant homology to any known protein families. As {approx}50percent of the 2 million genes derived from the cow rumen metagenome failed to be annotated based on sequence homology, we tested whether rhModeller could be used to annotate these genes. Preliminary results suggest that rhModeller is robust in the presence of missense and frameshift mutations, two common errors in metagenomic genes. Applying the pipeline to the cow rumen genes identified 4,990 novel cellulases candidates and 8,196 novel carbonic anhydrase candidates.In summary, we expect rhModeller to dramatically increase the speed and quality of metagnomic gene annotation.

  10. AutoFACT: An Automatic Functional Annotation and Classification Tool

    Directory of Open Access Journals (Sweden)

    Lang B Franz

    2005-06-01

    Full Text Available Abstract Background Assignment of function to new molecular sequence data is an essential step in genomics projects. The usual process involves similarity searches of a given sequence against one or more databases, an arduous process for large datasets. Results We present AutoFACT, a fully automated and customizable annotation tool that assigns biologically informative functions to a sequence. Key features of this tool are that it (1 analyzes nucleotide and protein sequence data; (2 determines the most informative functional description by combining multiple BLAST reports from several user-selected databases; (3 assigns putative metabolic pathways, functional classes, enzyme classes, GeneOntology terms and locus names; and (4 generates output in HTML, text and GFF formats for the user's convenience. We have compared AutoFACT to four well-established annotation pipelines. The error rate of functional annotation is estimated to be only between 1–2%. Comparison of AutoFACT to the traditional top-BLAST-hit annotation method shows that our procedure increases the number of functionally informative annotations by approximately 50%. Conclusion AutoFACT will serve as a useful annotation tool for smaller sequencing groups lacking dedicated bioinformatics staff. It is implemented in PERL and runs on LINUX/UNIX platforms. AutoFACT is available at http://megasun.bch.umontreal.ca/Software/AutoFACT.htm.

  11. MIPS: analysis and annotation of genome information in 2007.

    Science.gov (United States)

    Mewes, H W; Dietmann, S; Frishman, D; Gregory, R; Mannhaupt, G; Mayer, K F X; Münsterkötter, M; Ruepp, A; Spannagl, M; Stümpflen, V; Rattei, T

    2008-01-01

    The Munich Information Center for Protein Sequences (MIPS-GSF, Neuherberg, Germany) combines automatic processing of large amounts of sequences with manual annotation of selected model genomes. Due to the massive growth of the available data, the depth of annotation varies widely between independent databases. Also, the criteria for the transfer of information from known to orthologous sequences are diverse. To cope with the task of global in-depth genome annotation has become unfeasible. Therefore, our efforts are dedicated to three levels of annotation: (i) the curation of selected genomes, in particular from fungal and plant taxa (e.g. CYGD, MNCDB, MatDB), (ii) the comprehensive, consistent, automatic annotation employing exhaustive methods for the computation of sequence similarities and sequence-related attributes as well as the classification of individual sequences (SIMAP, PEDANT and FunCat) and (iii) the compilation of manually curated databases for protein interactions based on scrutinized information from the literature to serve as an accepted set of reliable annotated interaction data (MPACT, MPPI, CORUM). All databases and tools described as well as the detailed descriptions of our projects can be accessed through the MIPS web server (http://mips.gsf.de).

  12. Lessons Learned from Net Zero Energy Assessments and Renewable Energy Projects at Military Installations

    Energy Technology Data Exchange (ETDEWEB)

    Callahan, M.; Anderson, K.; Booth, S.; Katz, J.; Tetreault, T.

    2011-09-01

    Report highlights the increase in resources, project speed, and scale that is required to achieve the U.S. Department of Defense (DoD) energy efficiency and renewable energy goals and summarizes the net zero energy installation assessment (NZEI) process and the lessons learned from NZEI assessments and large-scale renewable energy projects implementations at DoD installations.

  13. Environmental assessment -- Proposed neutrino beams at the Main Injector project

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-12-01

    The US Department of Energy (DOE) proposes to build a beamline on the Fermi National Accelerator Laboratory (Fermilab) site to accommodate an experimental research program in neutrino physics. The proposed action, called Neutrino Beams at the Main Injector (NuMI), is to design, construct, operate and decommission a facility for producing and studying a high flux beam of neutrinos in the energy range of 1 to 40 GeV (1 GeV is one billion or 10{sup 9} electron volts). The proposed facility would initially be dedicated to two experiments, COSMOS (Cosmologically Significant Mass Oscillations) and MINOS (Main Injector Neutrino Oscillation Search). The neutrino beam would pass underground from Fermilab to northern Minnesota. A tunnel would not be built in this intervening region because the neutrinos easily pass through the earth, not interacting, similar to the way that light passes through a pane of glass. The beam is pointed towards the MINOS detector in the Soudan Underground Laboratory in Minnesota. Thus, the proposed project also includes construction, operation and decommissioning of the facility located in the Soudan Underground Laboratory in Minnesota that houses this MINOS detector. This environmental assessment (EA) has been prepared by the US Department of Energy (DOE) in accordance with the DOE`s National Environmental Policy Act (NEPA) Implementing Procedures (10 CFR 1021). This EA documents DOE`s evaluation of potential environmental impacts associated with the proposed construction and operation of NuMI at Fermilab and its far detector facility located in the Soudan Underground Laboratory in Minnesota. Any future use of the facilities on the Fermilab site would require the administrative approval of the Director of Fermilab and would undergo a separate NEPA review. Fermilab is a Federal high-energy physics research laboratory in Batavia, Illinois operated on behalf of the DOE by Universities Research Association, Inc.

  14. Water assessment report: Section 13 (c); Great Plains gasification project, Mercer County, ND

    Energy Technology Data Exchange (ETDEWEB)

    None

    1980-12-01

    The Water Resources Council is completing a water assessment of synfuels development in the Upper Missouri River Basin. This is being done under Section 13(a) of the Federal Nonnuclear Energy Research and Development Act. The assessment area includes the coal deposits in the Mercer County project site. Levels of North Dakota coal gasification development that are several times the production level of the Great Plains gasification project are being examined. This report assesses: (1) the availability of adequate water supplies to meet the water requirements of the project, supporting activities, and other development induced by the project; and (2) the changes in the water resources that will result from the project. Findings of the 13(a) assessment show that water supplies are physically available within the mainstem of the Missouri River in North Dakota to supply the requirements of the gasification facilities and the supporting activities - mining and reclamation, electricity, and project-induced population increases.

  15. An Assessment of risk response strategies practiced in software projects

    Directory of Open Access Journals (Sweden)

    Vanita Bhoola

    2014-11-01

    Full Text Available Risk management and success in projects are highly intertwined – better approaches to project risk management tend to increase chances of project success in terms of achieving scope & quality, schedule and cost targets. The process of responding to risk factors during a project’s life cycle is a crucial aspect of risk management referred to as risk response strategies, in this paper. The current research explores the status of risk response strategies applied in the software development projects in India. India provides a young IT-savvy English-speaking population, which is also cost effective. Other than the workforce, the environment for implementation of software projects in India is different from the matured economies. Risk management process is a commonly discussed theme, though its implementation in practice has a huge scope for improvement in India. The paper talks about four fundamental treatments to risk response – Avoidance, Transference, Mitigation and Acceptance (ATMA. From a primary data of 302 project managers, the paper attempts to address the risk response factors that lead to successful achievement of project scope & quality, schedule and cost targets, by using a series of regressions followed with Seemingly Unrelated Regression Equations (SURE modelling. Mitigation emerged as the most significant risk response strategy to achieve project targets. Acceptance, transference, and avoidance of risk were mostly manifested in the forms of transparency in communication across stakeholders, careful study of the nature of risks and close coordination between project team, customers/end-users and top management.

  16. Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation

    Directory of Open Access Journals (Sweden)

    Mayer Klaus FX

    2007-08-01

    Full Text Available Abstract Background Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using Apollo for annotation, database updates are carried out by uploading intermediate annotation files into the respective database. This non-direct database upload is laborious and evokes problems of data synchronicity. Results To overcome these limitations we extended the Apollo data adapter with a generic, configurable web service client that is able to retrieve annotation data in a GAME-XML-formatted string and pass it on to Apollo's internal input routine. Conclusion This Apollo web service adapter, Apollo2Go, simplifies the data exchange in distributed projects and aims to render the annotation process more comfortable. The Apollo2Go software is freely available from ftp://ftpmips.gsf.de/plants/apollo_webservice.

  17. Semantic annotation of medical images

    Science.gov (United States)

    Seifert, Sascha; Kelm, Michael; Moeller, Manuel; Mukherjee, Saikat; Cavallaro, Alexander; Huber, Martin; Comaniciu, Dorin

    2010-03-01

    Diagnosis and treatment planning for patients can be significantly improved by comparing with clinical images of other patients with similar anatomical and pathological characteristics. This requires the images to be annotated using common vocabulary from clinical ontologies. Current approaches to such annotation are typically manual, consuming extensive clinician time, and cannot be scaled to large amounts of imaging data in hospitals. On the other hand, automated image analysis while being very scalable do not leverage standardized semantics and thus cannot be used across specific applications. In our work, we describe an automated and context-sensitive workflow based on an image parsing system complemented by an ontology-based context-sensitive annotation tool. An unique characteristic of our framework is that it brings together the diverse paradigms of machine learning based image analysis and ontology based modeling for accurate and scalable semantic image annotation.

  18. Publication Production: An Annotated Bibliography.

    Science.gov (United States)

    Firman, Anthony H.

    1994-01-01

    Offers brief annotations of 52 articles and papers on document production (from the Society for Technical Communication's journal and proceedings) on 9 topics: information processing, document design, using color, typography, tables, illustrations, photography, printing and binding, and production management. (SR)

  19. How is it going? Peformance assessment in major projects

    DEFF Research Database (Denmark)

    Maylor, Harvey; Johnson, Mark; Turner, Neil

    2017-01-01

    Determining the performance of a major project is a challenge for both practitioners and scholars. In the context of operational change projects the challenge is exacerbated by the service-intensive nature of the transformation, temporal disconnects between contracting and delivery and lack of ap...

  20. Lower Columbia River Terminal Fisheries Research Project : Final Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1995-04-01

    This notice announces BPA`S`s decision to fund the Oregon Department of Fish and Wildlife (ODFW), the Washington Department of Fish and Wildlife (WDFW), and the Clatsop Economic Development Committee for the Lower Columbia River Terminal Fisheries Research Project (Project). The Project will continue the testing of various species/stocks, rearing regimes, and harvest options for terminal fisheries, as a means to increase lower river sport and commercial harvest of hatchery fish, while providing both greater protection of weaker wild stocks and increasing the return of upriver salmon runs to potential Zone 6 Treaty fisheries. The Project involves relocating hatchery smolts to new, additional pen locations in three bays/sloughs in the lower Columbia River along both the Oregon and Washington sides. The sites are Blind Slough and Tongue Point in Clatsop County, Oregon, and Grays Bay/Deep River, Wahkiakum County, Washington. The smolts will be acclimated for various lengths of time in the net pens and released from these sites. The Project will expand upon an existing terminal fisheries project in Youngs Bay, Oregon. The Project may be expanded to other sites in the future, depending on the results of this initial expansion. BPA`S has determined the project is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an environmental impact statement is not required, and BPA`S is issuing this FONSI.

  1. THE ASSESSMENT OF RISKS THAT THREATEN A PROJECT

    Directory of Open Access Journals (Sweden)

    CRISTINA MARIA STOICA

    2012-05-01

    Full Text Available A project consists of a number of interrelated tasks whose aim is to produce a specific result. A project risk analysis consists of analyzing schedule, cost risk, quality of the final product etc. A cost risk analysis consists oflooking at the various costs associated with a project, their uncertainties and any risks or opportunities that may affect these costs. The distributions of cost are added up in a risk analysis to determine the uncertainty in thetotal cost of the project. A schedule risk analysis looks at the time required to complete the various tasks associated with a project, and the interrelationship between these tasks. In this paper we want to study the various risks associated with the project. We start this study with the assumption that a project’s cost and duration are linked together and also cost elements and schedule durations are correlated. The normal uncertainties in the cost items are modeled by continuous distributions like the Pert or triangular distribution. For project schedule modeling the most flexible environment is spreadsheet. We are interested in building blocks that typically make up a schedule risk analysis (also a cost risk analysis and then show how these elements are combined to produce a realistic model. In the same time we want implement software tools for run Monte Carlo simulations on standard project planning applications.

  2. THE ASSESSMENT OF RISKS THAT THREATEN A PROJECT

    Directory of Open Access Journals (Sweden)

    Cristina Maria STOICA

    2012-11-01

    Full Text Available A project consists of a number of interrelated tasks whose aim is to produce a specific result. A project risk analysis consists of analyzing schedule, cost risk, quality of the final product etc. A cost risk analysis consists of looking at the various costs associated with a project, their uncertainties and any risks or opportunities that may affect these costs. The distributions of cost are added up in a risk analysis to determine the uncertainty in the total cost of the project. A schedule risk analysis looks at the time required to complete the various tasks associated with a project, and the interrelationship between these tasks. In this paper we want to study the various risks associated with the project. We start this study with the assumption that a project’s cost and duration are linked together and also cost elements and schedule durations are correlated. The normal uncertainties in the cost items are modeled by continuous distributions like the Pert or triangular distribution. For project schedule modeling the most flexible environment is spreadsheet. We are interested in building blocks that typically make up a schedule risk analysis (also a cost risk analysis and then show how these elements are combined to produce a realistic model. In the same time we want implement software tools for run Monte Carlo simulations on standard project planning applications.

  3. Assessment of Project-Based Learning in a MECHATRONICS Context

    Science.gov (United States)

    Doppelt, Yaron

    2005-01-01

    Project-based learning (PBL) that has authenticity in the pupils' world enables the teaching of science and technology to pupils from a variety of backgrounds. PBL has the potential to enable pupils to research, plan, design, and reflect on the creation of technological projects (Doppelt, 2000). Engineering education, which is common in Israel,…

  4. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

    Science.gov (United States)

    Huntemann, Marcel; Ivanova, Natalia N; Mavromatis, Konstantinos; Tripp, H James; Paez-Espino, David; Palaniappan, Krishnaveni; Szeto, Ernest; Pillay, Manoj; Chen, I-Min A; Pati, Amrita; Nielsen, Torben; Markowitz, Victor M; Kyrpides, Nikos C

    2015-01-01

    The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata description in GOLD. The MGAP sequence data processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNA features, as well as CRISPR elements. Structural annotation is followed by assignment of protein product names and functions.

  5. NCBI prokaryotic genome annotation pipeline.

    Science.gov (United States)

    Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat; Chetvernin, Vyacheslav; Nawrocki, Eric P; Zaslavsky, Leonid; Lomsadze, Alexandre; Pruitt, Kim D; Borodovsky, Mark; Ostell, James

    2016-08-19

    Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed. In collaboration with Georgia Tech, NCBI has developed a new approach to genome annotation that combines alignment based methods with methods of predicting protein-coding and RNA genes and other functional elements directly from sequence. A new gene finding tool, GeneMarkS+, uses the combined evidence of protein and RNA placement by homology as an initial map of annotation to generate and modify ab initio gene predictions across the whole genome. Thus, the new NCBI's Prokaryotic Genome Annotation Pipeline (PGAP) relies more on sequence similarity when confident comparative data are available, while it relies more on statistical predictions in the absence of external evidence. The pipeline provides a framework for generation and analysis of annotation on the full breadth of prokaryotic taxonomy. For additional information on PGAP see https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ and the NCBI Handbook, https://www.ncbi.nlm.nih.gov/books/NBK174280/.

  6. Program Evaluation in the Arts. An Annotated Bibliography.

    Science.gov (United States)

    Wildemuth, Barbara M., Comp.; Eichinger, Debra S., Comp.

    This 56-item annotated bibliography gives teachers and administrators access to information on the evaluation of school fine arts programs. Based upon a computer search of the Educational Resources Information Center (ERIC) data base, it cites project reports, journal articles, and dissertations published from 1963 to 1976. Citations of elementary…

  7. Genome Annotation in a Community College Cell Biology Lab

    Science.gov (United States)

    Beagley, C. Timothy

    2013-01-01

    The Biology Department at Salt Lake Community College has used the IMG-ACT toolbox to introduce a genome mapping and annotation exercise into the laboratory portion of its Cell Biology course. This project provides students with an authentic inquiry-based learning experience while introducing them to computational biology and contemporary learning…

  8. Kinder Lernen Deutsch. Materials Project Part I. Revised.

    Science.gov (United States)

    American Association of Teachers of German.

    The Kinder Lernen Deutsch (LKD) materials evaluation project identifies materials appropriate for the elementary school German classrooms in grades K-8. This guide consists of an annotated bibliography, with ratings, of these materials. The guiding principles by which the materials were assessed were: use of the communicative approach; integration…

  9. Short Mountain Landfill Gas Recovery Project : Stage 1 Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1992-05-01

    The Bonneville Power Administration (BPA), a Federal power marketing agency, has statutory responsibilities to supply electrical power to its utility, industrial, and other customers in the Pacific Northwest. BPA`s latest load/resource balance forecast, projects the capability of existing resources to satisfy projected Federal system loads. The forecast indicates a potential resource deficit. The underlying need for action is to satisfy BPA customers` demand for electrical power.

  10. Milliken Clean Coal Demonstration Project: A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2001-08-15

    The goal of the U.S. Department of Energy's (DOE) Clean Coal Technology (CCT) program is to furnish the energy marketplace with a number of advanced, more efficient, and environmentally responsible coal-utilization technologies through demonstration projects. These projects seek to establish the commercial feasibility of the most promising advanced coal technologies that have developed beyond the proof-of-concept stage.

  11. National Assessment of Oil and Gas Project - East Coast Mesozoic Basins of the Piedmont, Blue Ridge Thrust Belt, Atlantic Coastal Plain, and New England Provinces Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is...

  12. Objective-guided image annotation.

    Science.gov (United States)

    Mao, Qi; Tsang, Ivor Wai-Hung; Gao, Shenghua

    2013-04-01

    Automatic image annotation, which is usually formulated as a multi-label classification problem, is one of the major tools used to enhance the semantic understanding of web images. Many multimedia applications (e.g., tag-based image retrieval) can greatly benefit from image annotation. However, the insufficient performance of image annotation methods prevents these applications from being practical. On the other hand, specific measures are usually designed to evaluate how well one annotation method performs for a specific objective or application, but most image annotation methods do not consider optimization of these measures, so that they are inevitably trapped into suboptimal performance of these objective-specific measures. To address this issue, we first summarize a variety of objective-guided performance measures under a unified representation. Our analysis reveals that macro-averaging measures are very sensitive to infrequent keywords, and hamming measure is easily affected by skewed distributions. We then propose a unified multi-label learning framework, which directly optimizes a variety of objective-specific measures of multi-label learning tasks. Specifically, we first present a multilayer hierarchical structure of learning hypotheses for multi-label problems based on which a variety of loss functions with respect to objective-guided measures are defined. And then, we formulate these loss functions as relaxed surrogate functions and optimize them by structural SVMs. According to the analysis of various measures and the high time complexity of optimizing micro-averaging measures, in this paper, we focus on example-based measures that are tailor-made for image annotation tasks but are seldom explored in the literature. Experiments show consistency with the formal analysis on two widely used multi-label datasets, and demonstrate the superior performance of our proposed method over state-of-the-art baseline methods in terms of example-based measures on four

  13. GIFtS: annotation landscape analysis with GeneCards

    Directory of Open Access Journals (Sweden)

    Dalah Irina

    2009-10-01

    Full Text Available Abstract Background Gene annotation is a pivotal component in computational genomics, encompassing prediction of gene function, expression analysis, and sequence scrutiny. Hence, quantitative measures of the annotation landscape constitute a pertinent bioinformatics tool. GeneCards® is a gene-centric compendium of rich annotative information for over 50,000 human gene entries, building upon 68 data sources, including Gene Ontology (GO, pathways, interactions, phenotypes, publications and many more. Results We present the GeneCards Inferred Functionality Score (GIFtS which allows a quantitative assessment of a gene's annotation status, by exploiting the unique wealth and diversity of GeneCards information. The GIFtS tool, linked from the GeneCards home page, facilitates browsing the human genome by searching for the annotation level of a specified gene, retrieving a list of genes within a specified range of GIFtS value, obtaining random genes with a specific GIFtS value, and experimenting with the GIFtS weighting algorithm for a variety of annotation categories. The bimodal shape of the GIFtS distribution suggests a division of the human gene repertoire into two main groups: the high-GIFtS peak consists almost entirely of protein-coding genes; the low-GIFtS peak consists of genes from all of the categories. Cluster analysis of GIFtS annotation vectors provides the classification of gene groups by detailed positioning in the annotation arena. GIFtS also provide measures which enable the evaluation of the databases that serve as GeneCards sources. An inverse correlation is found (for GIFtS>25 between the number of genes annotated by each source, and the average GIFtS value of genes associated with that source. Three typical source prototypes are revealed by their GIFtS distribution: genome-wide sources, sources comprising mainly highly annotated genes, and sources comprising mainly poorly annotated genes. The degree of accumulated knowledge for a

  14. Post-project geomorphic assessment of a large process-based river restoration project

    Science.gov (United States)

    Erwin, Susannah O.; Schmidt, John C.; Allred, Tyler M.

    2016-10-01

    This study describes channel changes following completion of the Provo River Restoration Project (PRRP), the largest stream restoration project in Utah and one of the largest projects in the United States in which a gravel-bed river was fully reconstructed. We summarize project objectives and the design process, and we analyze monitoring data collected during the first 7 years after project completion. Post-project channel adjustment during the study period included two phases: (i) an initial phase of rapid, but small-scale, adjustment during the first years after stream flow was introduced to the newly constructed channel and (ii) a subsequent period of more gradual topographic adjustment and channel migration. Analysis of aerial imagery and ground-survey data demonstrate that the channel has been more dynamic in the downstream 4 km where a local source contributes a significant annual supply of bed material. Here, the channel migrates and exhibits channel adjustments that are more consistent with project objectives. The upstream 12 km of the PRRP are sediment starved, the channel has been laterally stable, and this condition may not be consistent with large-scale project objectives.

  15. Project RAILS: Lessons Learned about Rubric Assessment of Information Literacy Skills

    Science.gov (United States)

    Belanger, Jackie; Zou, Ning; Mills, Jenny Rushing; Holmes, Claire; Oakleaf, Megan

    2015-01-01

    Rubric assessment of information literacy is an important tool for librarians seeking to show evidence of student learning. The authors, who collaborated on the Rubric Assessment of Informational Literacy Skills (RAILS) research project, draw from their shared experience to present practical recommendations for implementing rubric assessment in a…

  16. cDNA2Genome: A tool for mapping and annotating cDNAs

    Directory of Open Access Journals (Sweden)

    Suhai Sandor

    2003-09-01

    Full Text Available Abstract Background In the last years several high-throughput cDNA sequencing projects have been funded worldwide with the aim of identifying and characterizing the structure of complete novel human transcripts. However some of these cDNAs are error prone due to frameshifts and stop codon errors caused by low sequence quality, or to cloning of truncated inserts, among other reasons. Therefore, accurate CDS prediction from these sequences first require the identification of potentially problematic cDNAs in order to speed up the posterior annotation process. Results cDNA2Genome is an application for the automatic high-throughput mapping and characterization of cDNAs. It utilizes current annotation data and the most up to date databases, especially in the case of ESTs and mRNAs in conjunction with a vast number of approaches to gene prediction in order to perform a comprehensive assessment of the cDNA exon-intron structure. The final result of cDNA2Genome is an XML file containing all relevant information obtained in the process. This XML output can easily be used for further analysis such us program pipelines, or the integration of results into databases. The web interface to cDNA2Genome also presents this data in HTML, where the annotation is additionally shown in a graphical form. cDNA2Genome has been implemented under the W3H task framework which allows the combination of bioinformatics tools in tailor-made analysis task flows as well as the sequential or parallel computation of many sequences for large-scale analysis. Conclusions cDNA2Genome represents a new versatile and easily extensible approach to the automated mapping and annotation of human cDNAs. The underlying approach allows sequential or parallel computation of sequences for high-throughput analysis of cDNAs.

  17. Wind resource assessment a practical guide to developing a wind project

    CERN Document Server

    Brower, Michael

    2012-01-01

    A practical, authoritative guide to the assessment of wind resources for utility-scale wind projects-authored by a team of experts from a leading renewable energy consultancy The successful development of wind energy projects depends on an accurate assessment of where, how often, and how strongly the wind blows. A mistake in this stage of evaluation can cause severe financial losses and missed opportunities for developers, lenders, and investors. Wind Resource Assessment: A Practical Guide to Developing a Wind Project shows readers how to achieve a high standard of resource a

  18. Empirical Assessment of Lanius et al.s’ ’Functional MRI of EMDR in Peacekeepers’, a Review of the EMDR Literature and an annotated bibliography

    Science.gov (United States)

    2002-07-01

    and reprocessing in eating disorders: Caution against premature acceptance. International Journal of Eating Disorders , 23, 1-5. MacCulloch, M.J...Caution against premature acceptance. International Journal of Eating Disorders , 23, 1-5. Reviews the literature to assess the benefits and risks of

  19. NRC assessment of the Department of Energy annealing demonstration project

    Energy Technology Data Exchange (ETDEWEB)

    Jackson, D.A.; Malik, S.N. [Nuclear Regulatory Commission, Washington, DC (United States)

    1997-02-01

    Thermal annealing is the only known method for mitigating the effects of neutron irradiation embrittlement in reactor pressure vessel (RPV) steels. In May 1996, the US Department of Energy (DOE) in conjunction with the American Society of Mechanical Engineers, Westinghouse, Cooperheat, Electric Power Research Institute (with participating utilities), Westinghouse Owner`s Group, Consumers Power, Electricite` de France, Duquesne Light and the Central Research Institute of the Electric Power Industry (Japan) sponsored an annealing demonstration project (ADP) at Marble Hill. The Marble Hill Plant, located in Madison, Indiana, is a Westinghouse 4 loop design. The plant was nearly 70% completed when the project was canceled. Hence, the RPV was never irradiated. The paper will present highlights from the NRCs independent evaluation of the Marble Hill Annealing Demonstration Project.

  20. Collective dynamics of social annotation.

    Science.gov (United States)

    Cattuto, Ciro; Barrat, Alain; Baldassarri, Andrea; Schehr, Gregory; Loreto, Vittorio

    2009-06-30

    The enormous increase of popularity and use of the worldwide web has led in the recent years to important changes in the ways people communicate. An interesting example of this fact is provided by the now very popular social annotation systems, through which users annotate resources (such as web pages or digital photographs) with keywords known as "tags." Understanding the rich emergent structures resulting from the uncoordinated actions of users calls for an interdisciplinary effort. In particular concepts borrowed from statistical physics, such as random walks (RWs), and complex networks theory, can effectively contribute to the mathematical modeling of social annotation systems. Here, we show that the process of social annotation can be seen as a collective but uncoordinated exploration of an underlying semantic space, pictured as a graph, through a series of RWs. This modeling framework reproduces several aspects, thus far unexplained, of social annotation, among which are the peculiar growth of the size of the vocabulary used by the community and its complex network structure that represents an externalization of semantic structures grounded in cognition and that are typically hard to access.

  1. A Novel Method for Assessing and Optimizing Software Project Process Based Risk Control

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A new approach for assessing and optimizing software project process based on software risk control pre-sented, which evaluates and optimizes software project process from the view of controlling the software project risks. A model for optimizing software risk control is given, a discrete optimization algorithm based on dynamic programming is proposed and an example of using above method to solve a problem is also included in this paper. By improving the old passive post-project control into an active effective pre-action, this new method can greatly promote the possibility of success of software projects.

  2. FEBEX II Project Post-mortem analysis EDZ assessment

    Energy Technology Data Exchange (ETDEWEB)

    Bazargan Sabet, B.; Shao, H.; Autio, J.; Elorza, F. J.

    2004-07-01

    Within the framework of the FEBEX II project a multidisciplinary team studied the mechanisms of creation of the potential damaged zone around the test drift. The research program includes laboratory and in situ investigations as well as the numerical modelling of the observed phenomena. Where laboratory investigations are concerned, the 14C-PMMA technique was applied to study the spatial distribution of porosity in the samples taken from the test drift wall. In addition complementary microscopy and scanning electron microscopy (SEM) studies were performed to make qualitative investigations on the pore apertures and minerals in porous regions. The results obtained with the PMMA method have not shown any clear increased porosity zone adjacent to the tunnel wall. The total porosity of the samples varied between 0.6-1.2%. The samples of unplugged region did not differ from the samples of plugged region. A clear increase in porosity to depths of 10-15 mm from the tunnel wall was detected in lamprophyre samples. According to the SEM/EDX analyses the excavation-disturbed zone in the granite matrix extended to depths of 1-3 mm from the wall surface. A few quartz grains were crushed and some micro fractures were found. Gas permeability tests were carried out on two hollow cylinder samples of about 1m long each taken on the granite wall perpendicular to the drift axis. The first sample was cored in the service area far from the heated zone and the second one at the level of the heater. The tests were performed at constant gas pressure by setting a steady state radial flow through a section of 1cm wide isolated by means of four mini-packers. The profile of the gas permeability according to the core length has been established. The results obtained for both considered samples have shown permeability ranging between 3.5 10-18 and 8.4 10-19m2, pointing out the absence of a marked damage. Acoustic investigations have been carried out with the objective of quantifying the

  3. Slope excavation quality assessment and excavated volume calculation in hydraulic projects based on laser scanning technology

    Directory of Open Access Journals (Sweden)

    Chao Hu

    2015-04-01

    Full Text Available Slope excavation is one of the most crucial steps in the construction of a hydraulic project. Excavation project quality assessment and excavated volume calculation are critical in construction management. The positioning of excavation projects using traditional instruments is inefficient and may cause error. To improve the efficiency and precision of calculation and assessment, three-dimensional laser scanning technology was used for slope excavation quality assessment. An efficient data acquisition, processing, and management workflow was presented in this study. Based on the quality control indices, including the average gradient, slope toe elevation, and overbreak and underbreak, cross-sectional quality assessment and holistic quality assessment methods were proposed to assess the slope excavation quality with laser-scanned data. An algorithm was also presented to calculate the excavated volume with laser-scanned data. A field application and a laboratory experiment were carried out to verify the feasibility of these methods for excavation quality assessment and excavated volume calculation. The results show that the quality assessment indices can be obtained rapidly and accurately with design parameters and scanned data, and the results of holistic quality assessment are consistent with those of cross-sectional quality assessment. In addition, the time consumption in excavation project quality assessment with the laser scanning technology can be reduced by 70%−90%, as compared with the traditional method. The excavated volume calculated with the scanned data only slightly differs from measured data, demonstrating the applicability of the excavated volume calculation method presented in this study.

  4. Performance assessment of the PNM Prosperity electricity storage project :

    Energy Technology Data Exchange (ETDEWEB)

    Roberson, Dakota; Ellison, James F.; Bhatnagar, Dhruv; Schoenwald, David A.

    2014-05-01

    The purpose of this study is to characterize the technical performance of the PNM Prosperity electricity storage project, and to identify lessons learned that can be used to improve similar projects in the future. The PNM Prosperity electricity storage project consists of a 500 kW/350 kWh advanced lead-acid battery with integrated supercapacitor (for energy smoothing) and a 250 kW/1 MWh advanced lead-acid battery (for energy shifting), and is co-located with a 500 kW solar photovoltaic (PV) resource. The project received American Reinvestment and Recovery Act (ARRA) funding. The smoothing system is e ective in smoothing intermittent PV output. The shifting system exhibits good round-trip efficiencies, though the AC-to-AC annual average efficiency is lower than one might hope. Given the current utilization of the smoothing system, there is an opportunity to incorporate additional control algorithms in order to increase the value of the energy storage system.

  5. Assessment of Communication Competencies in Engineering Design Projects

    NARCIS (Netherlands)

    Brinkman, Gert W.; Geest, van der Thea M.

    2003-01-01

    Reforms in engineering education have caused a shift from the traditional stand-alone course in technical communication for Engineering students towards communication training integrated in courses and design projects that allows students to develop four layers of competence. This shift creates oppo

  6. Performance assessment of the PNM Prosperity electricity storage project

    Energy Technology Data Exchange (ETDEWEB)

    Roberson, Dakota [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Ellison, James F. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Bhatnagar, Dhruv [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Schoenwald, David A. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2014-05-01

    The purpose of this study is to characterize the technical performance of the PNM Prosperity electricity storage project, and to identify lessons learned that can be used to improve similar projects in the future. The PNM Prosperity electricity storage project consists of a 500 kW/350 kWh advanced lead-acid battery with integrated supercapacitor (for energy smoothing) and a 250 kW/1 MWh advanced lead-acid battery (for energy shifting), and is co-located with a 500 kW solar photovoltaic (PV) resource. The project received American Reinvestment and Recovery Act (ARRA) funding. The smoothing system is e ective in smoothing intermittent PV output. The shifting system exhibits good round-trip efficiencies, though the AC-to-AC annual average efficiency is lower than one might hope. Given the current utilization of the smoothing system, there is an opportunity to incorporate additional control algorithms in order to increase the value of the energy storage system.

  7. UMTRA project disposal cell cover biointrusion sensitivity assessment, Revision 1

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-10-01

    This study provides an analysis of potential changes that may take place in a Uranium Mill Tailings Remedial Action (UMTRA) Project disposal cell cover system as a result of plant biointrusion. Potential changes are evaluated by performing a sensitivity analysis of the relative impact of root penetrations on radon flux out of the cell cover and/or water infiltration into the cell cover. Data used in this analysis consist of existing information on vegetation growth on selected cell cover systems and information available from published studies and/or other available project research. Consistent with the scope of this paper, no new site-specific data were collected from UMTRA Project sites. Further, this paper does not focus on the issue of plant transport of radon gas or other contaminants out of the disposal cell cover though it is acknowledged that such transport has the potential to be a significant pathway for contaminants to reach the environment during portions of the design life of a disposal cell where plant growth occurs. Rather, this study was performed to evaluate the effects of physical penetration and soil drying caused by plant roots that have and are expected to continue to grow in UMTRA Project disposal cell covers. An understanding of the biological and related physical processes that take place within the cover systems of the UMTRA Project disposal cells helps the U.S. Department of Energy (DOE) determine if the presence of a plant community on these cells is detrimental, beneficial, or of mixed value in terms of the cover system`s designed function. Results of this investigation provide information relevant to the formulation of a vegetation control policy.

  8. Progress and implications from the grazing lands Conservation Effects Assessment Project (CEAP) literature syntheses

    Science.gov (United States)

    The Conservation Effects Assessment Project (CEAP) is a multiagency effort to quantify scientifically the environmental outcomes of conservation practices used by private landowners. Two syntheses of the scientific literature are underway, which will document the environmental outcomes of conservati...

  9. Model-Based Real Time Assessment of Capability Left for Spacecraft Under Failure Mode Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The proposed project is aimed at developing a model based diagnostics system for spacecraft that will allow real time assessment of its state, while it is impacted...

  10. The Mind's Eye on Personal Profiles - How to inform trustworthiness assessments in virtual project teams

    NARCIS (Netherlands)

    Rusman, Ellen

    2011-01-01

    Rusman, E. (2011). The Mind's Eye on Personal Profiles - How to inform trustworthiness assessments in virtual project teams (Doctoral dissertation). June, 17, 2011, Open University in the Netherlands (CELSTEC), Heerlen, The Netherlands.

  11. The Mind's Eye on Personal Profiles - How to inform trustworthiness assessments in virtual project teams

    NARCIS (Netherlands)

    Rusman, Ellen

    2011-01-01

    Rusman, E. (2011, 17 June). Lekenpraatje over promotieonderzoek, als onderdeel van de verdediging van het proefschrift 'The Mind's Eye on Personal Profiles - How to inform trustworthiness assessments in virtual project teams'.

  12. Accuracy Assessment Points for Fossil Butte National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This point file displays the 661 accuracy assessment (AA) points visited in the late summer of 2006 as part of the vegetation mapping project. The points were...

  13. Accuracy Assessment Points for Capitol Reef National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This point file displays the 1,313 accuracy assessment (AA) points visited in the summer of 2005 as part of the vegetation mapping project. The points were randomly...

  14. Accuracy Assessment Points for Black Canyon of the Gunnison National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This point file displays the 757 accuracy assessment (AA) points visited in the late summer of 2004 as part of the vegetation mapping project. The points were...

  15. Accuracy Assessment Points for Natural Bridges National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This point file displays the 288 accuracy assessment (AA) points visited in the fall of 2004 as part of the vegetation mapping project. The points were randomly...

  16. On-Orbit Health Monitoring and Repair Assessment of Thermal Protection Systems Project

    Data.gov (United States)

    National Aeronautics and Space Administration — This SBIR project delivers On-orbit health MoNItoring and repair assessment of THERMal protection systems (OMNI_THERM). OMNI_THERM features impedance-based...

  17. Nonlinear Time Reversal Acoustic Method of Friction Stir Weld Assessment Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The goal of the project is demonstration of the feasibility of Friction Stir Weld (FSW) assessment by novel Nonlinear Time Reversal Acoustic (TRA) method. Time...

  18. Assessing Instructor Performance: A Classroom Project for an Industrial/Organizational Psychology Class.

    Science.gov (United States)

    Kottke, Janet L.

    1984-01-01

    For a class project students in an industrial/organizational psychology course had to construct a performance appraisal instrument for assessing the instructor's performance. Evaluations revealed that students found the exercise useful. (RM)

  19. Outline for a human-based assessment methodology of urban projects. The case of Polis Gondomar

    Directory of Open Access Journals (Sweden)

    Paolo Marcolin

    2015-06-01

    Full Text Available This paper presents the results of a preliminary research project proposing an assessment methodology for the actual impacts of urban projects on city development[1]. At this stage, the research has focused on the identification of indicators about the success of urban projects according to the accomplishment, functioning and use of public spaces. A case study is presented as a means for exploring these indicators: the intervention made by the Polis Programme at Gondomar.

  20. Contractors’ Strategic Approaches to Risk Assessment Techniques at Project Planning Stage

    OpenAIRE

    Ahmad Zaini, Afzan; Endut, Intan Rohani; Takim, Roshana

    2011-01-01

    Abstract — The construction industry is still plagued by poor quality, poor workmanship, poor safety and health environment, and poor practices. The current main problem in the Malaysian Construction Industry is delayed projects under the Ninth Malaysia Plan. The idea of introducing formal risk assessment among Malaysian contractors during the project planning stage is a proactive approach to achieve project objectives. Therefore, this research intends to achieve the following objectives: (1)...

  1. Annotations of Mexican bullfighting videos for semantic index

    Science.gov (United States)

    Montoya Obeso, Abraham; Oropesa Morales, Lester Arturo; Fernando Vázquez, Luis; Cocolán Almeda, Sara Ivonne; Stoian, Andrei; García Vázquez, Mireya Saraí; Zamudio Fuentes, Luis Miguel; Montiel Perez, Jesús Yalja; de la O Torres, Saul; Ramírez Acosta, Alejandro Alvaro

    2015-09-01

    The video annotation is important for web indexing and browsing systems. Indeed, in order to evaluate the performance of video query and mining techniques, databases with concept annotations are required. Therefore, it is necessary generate a database with a semantic indexing that represents the digital content of the Mexican bullfighting atmosphere. This paper proposes a scheme to make complex annotations in a video in the frame of multimedia search engine project. Each video is partitioned using our segmentation algorithm that creates shots of different length and different number of frames. In order to make complex annotations about the video, we use ELAN software. The annotations are done in two steps: First, we take note about the whole content in each shot. Second, we describe the actions as parameters of the camera like direction, position and deepness. As a consequence, we obtain a more complete descriptor of every action. In both cases we use the concepts of the TRECVid 2014 dataset. We also propose new concepts. This methodology allows to generate a database with the necessary information to create descriptors and algorithms capable to detect actions to automatically index and classify new bullfighting multimedia content.

  2. Using Projects Scoring Rubrics to Assess Student Learning in an Information Systems Program

    Science.gov (United States)

    Petkov, Doncho; Petkova, Olga; D'Onofrio, Marianne; Jarmoszko, A. T.

    2008-01-01

    This paper is about using projects for assessment of student learning in different courses of an Information Systems (IS) program. An overview of the role of educational projects in student learning is presented. The various aspects of defining standardized rubrics across an IS program are discussed. A methodology for the use of such rubrics in…

  3. The Validity of Project Assessment in an Advanced Level Biology Examination.

    Science.gov (United States)

    Brown, C. R.; And Others

    1995-01-01

    Assessment of practical objectives by means of a project which occurred in an operational Advanced level examination in the United Kingdom is analyzed for construct validity. As in previous research, low correlation were found between scores of (n=218) candidates on the project and on the other components of the examination. (18 references)…

  4. Risk Informed Design Using Integrated Vehicle Rapid Assessment Tools Project

    Data.gov (United States)

    National Aeronautics and Space Administration — A successful proof of concept was performed in FY 2012 integrating the Envision tool for parametric estimates of vehicle mass and the Rapid Response Risk Assessment...

  5. Accuracy Assessment Points for Petersburg National Battlefield Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This shapefile depicts the locations of thematic accuracy assessment sampling points used in the vegetation mapping of Petersburg National Battlefield. It was...

  6. Accuracy Assessment Points for Tuzigoot National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — The accuracy assessment field work was performed in May, 1997 to verify the accuracy of the vegetation communities spatial data developed by the USGS-NPS Vegetation...

  7. Accuracy Assessment Points for Badlands National Park Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This metadata is for the accuracy assessment data associated with the vegetation land cover and land use geospatial database for Badlands National Park and...

  8. CogGauge (A Cognitive Assessment Tool) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Cognitive Gauge (CogGauge) tool aims to develop a portable gaming application that assesses cognitive state of astronaut crew members with the goal of...

  9. Architecture Framework for Fault Management Assessment And Design (AFFMAD) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Architecture Framework for Fault Management Assessment And Design (AFFMAD) is a constraint-checking system for FM trade space exploration that provides rigorous...

  10. Accuracy Assessment Points for Wupatki National Monument Vegetation Mapping Project

    Data.gov (United States)

    National Park Service, Department of the Interior — This spatial dataset in ESRI Coverage format maps accuracy assessment point locations for the vegetation map at Wupatki National Monument and in the surrounding...

  11. PRINCIPLES OF ASSESSING THE SOCIAL EFFECTS BY IMPLEMENTING INVESTMENT PROJECTS

    Directory of Open Access Journals (Sweden)

    Denis SIMOV

    2013-12-01

    Full Text Available Financial instruments are efficient – in terms of resource – mobilization of cohesion policy resources to achieve the objectives of the strategy. Rules of forming the investment strategy, particularly in State structures, by using the budget funds of the Republic of Moldova, must include as one of the criteria for project selection, the achieve of a positive social effect associated with its implementation.

  12. Environmental Assessment: Gulf Power Company Military Point Transmission Line Project

    Science.gov (United States)

    2014-05-12

    medium-sized mammals , a variety of reptilian and amphibian species, and a large diversity of water and terrestrial bird species (Tyndall AFB 1999...John Dingwall Project Manager 325th Civil Engineer Squadron 119 Alabama Avenue People Serving Peopfeu Re: Gulf Power Company Military Point...Force 3251h Civil Engineer Squadron 119 Alabama Avenue Tyndall AFB, FL 32403-5014 Dear Mr. Dingwall: I have revieweKI the proposal for Gulf Power

  13. NASA: Assessments of Selected Large-Scale Projects

    Science.gov (United States)

    2011-03-01

    Investment Decisions and Project Outcomes, GAO-06-218 (Washington, D.C.: Dec. 21, 2005); and NASA’s Space Vision: Business Case for Prometheus 1 Needed to...certified vehicle currently available to NASA missions in the ICESat-2 launch time frame is the Atlas V, an intermediate launch vehicle. The only medium...2 selects the Falcon 9, the mission launch date would be tied to a successful certification of the launch vehicle. The Atlas V comes at a higher cost

  14. Intelligent Vehicle Charging Benefits Assessment Using EV Project Data

    Energy Technology Data Exchange (ETDEWEB)

    Letendre, Steven; Gowri, Krishnan; Kintner-Meyer, Michael CW; Pratt, Richard M.

    2013-12-01

    PEVs can represent a significant power resource for the grid. An IVCI with bi-direction V2G capabilities would allow PEVs to provide grid support services and thus generate a source of revenue for PEV owners. The fleet of EV Project vehicles represents a power resource between 30 MW and 90 MW, depending on the power rating of the grid connection (5-15 kW). Aggregation of vehicle capacity would allow PEVs to participate in wholesale reserve capacity markets. One of the key insights from EV Project data is the fact that vehicles are connected to an EVSE much longer than is necessary to deliver a full charge. During these hours when the vehicles are not charging, they can be participating in wholesale power markets providing the high-value services of regulation and spinning reserves. The annual gross revenue potential for providing these services using the fleet of EV Project vehicles is several hundred thousands of dollars to several million dollars annually depending on the power rating of the grid interface, the number of hours providing grid services, and the market being served. On a per vehicle basis, providing grid services can generate several thousands of dollars over the life of the vehicle.

  15. Cartel: Annotations and Analyses of Bilingual Multicultural Materials. Winter 1976-77. Vol. IV, No. 2.

    Science.gov (United States)

    Dissemination and Assessment Center for Bilingual Education, Austin, TX.

    This is an informative listing for educators, librarians, and others interested in materials for bilingual multicultural education. There are two main sections, annotations and analyses. Annotated entries are arranged under the following headings: (1) assessment and evaluation; (2) bibliographies; (3) classroom resources; (4) English as a second…

  16. LNG annotated bibliography

    Energy Technology Data Exchange (ETDEWEB)

    Bomelburg, H.J.; Counts, C.A.; Cowan, C.E.; Davis, W.E.; DeSteese, J.G.; Pelto, P.J.

    1982-09-01

    This document updates the bibliography published in Liquefied Gaseous Fuels Safety and Environmental Control Assessment Program: third status report (PNL-4172) and is a complete listing of literature reviewed and reported under the LNG Technical Surveillance Task. The bibliography is organized alphabetically by author.

  17. An assessment of adherence to basic ecological principles by payments for ecosystem service projects.

    Science.gov (United States)

    Prager, C M; Varga, A; Olmsted, P; Ingram, J C; Cattau, M; Freund, C; Wynn-Grant, R; Naeem, S

    2016-08-01

    Programs and projects employing payments for ecosystem service (PES) interventions achieve their objectives by linking buyers and sellers of ecosystem services. Although PES projects are popular conservation and development interventions, little is known about their adherence to basic ecological principles. We conducted a quantitative assessment of the degree to which a global set of PES projects adhered to four ecological principles that are basic scientific considerations for any project focused on ecosystem management: collection of baseline data, identification of threats to an ecosystem service, monitoring, and attention to ecosystem dynamics or the formation of an adaptive management plan. We evaluated 118 PES projects in three markets-biodiversity, carbon, and water-compiled using websites of major conservation organizations; ecology, economic, and climate-change databases; and three scholarly databases (ISI Web of Knowledge, Web of Science, and Google Scholar). To assess adherence to ecological principles, we constructed two scientific indices (one additive [ASI] and one multiplicative [MSI]) based on our four ecological criteria and analyzed index scores by relevant project characteristics (e.g., sector, buyer, seller). Carbon-sector projects had higher ASI values (P principles. Projects financed by public-private partnerships had significantly higher ASI values than projects financed by governments (P principles based on the inclusion of cobenefits, the spatial extent of a project, or the size of a project's budget. These findings suggest, at this critical phase in the rapid growth of PES projects, that fundamental ecological principles should be considered more carefully in PES project design and implementation in an effort to ensure PES project viability and sustainability.

  18. Health impact assessment of industrial development projects: a spatio-temporal visualization

    Directory of Open Access Journals (Sweden)

    Mirko S. Winkler

    2012-05-01

    Full Text Available Development and implementation of large-scale industrial projects in complex eco-epidemiological settings typically require combined environmental, social and health impact assessments. We present a generic, spatio-temporal health impact assessment (HIA visualization, which can be readily adapted to specific projects and key stakeholders, including poorly literate communities that might be affected by consequences of a project. We illustrate how the occurrence of a variety of complex events can be utilized for stakeholder communication, awareness creation, interactive learning as well as formulating HIA research and implementation questions. Methodological features are highlighted in the context of an iron ore development in a rural part of Africa.

  19. USGS National and Global Oil and Gas Assessment Project-Burgos, Tampico-Misantla, and Sabinas Provinces, Northeast Mexico, Assessment Unit Boundaries

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Assessment Unit is the fundamental unit used in the National and Global Petroleum Assessment Project for the assessment of undiscovered oil and gas resources....

  20. Annotated Bibliography on Humanistic Education

    Science.gov (United States)

    Ganung, Cynthia

    1975-01-01

    Part I of this annotated bibliography deals with books and articles on such topics as achievement motivation, process education, transactional analysis, discipline without punishment, role-playing, interpersonal skills, self-acceptance, moral education, self-awareness, values clarification, and non-verbal communication. Part II focuses on…

  1. Teacher Evaluation: An Annotated Bibliography.

    Science.gov (United States)

    McKenna, Bernard H.; And Others

    In his introduction to the 86-item annotated bibliography by Mueller and Poliakoff, McKenna discusses his views on teacher evaluation and his impressions of the documents cited. He observes, in part, that the current concern is with the process of evaluation and that most researchers continue to believe that student achievement is the most…

  2. Bioinformatics for plant genome annotation

    NARCIS (Netherlands)

    Fiers, M.W.E.J.

    2006-01-01

    Large amounts of genome sequence data are available and much more will become available in the near future. A DNA sequence alone has, however, limited use. Genome annotation is required to assign biological interpretation to the DNA sequence. This thesis describ

  3. Child Development: An Annotated Bibliography.

    Science.gov (United States)

    Dickerson, LaVerne Thornton, Comp.

    This annotated bibliography focuses on recent publications dealing with factors that influence child growth and development, rather than the developmental processes themselves. Topics include: general sources on child development; physical and perceptual-motor development; cognitive development; social and personality development; and play.…

  4. Nikos Kazantzakis: An Annotated Bibliography.

    Science.gov (United States)

    Qiu, Kui

    This research paper consists of an annotated bibliography about Nikos Kazantzakis, one of the major modern Greek writers and author of "The Last Temptation of Christ,""Zorba the Greek," and many other works. Because of Kazantzakis' position in world literature there are many critical works about him; however, bibliographical control of these works…

  5. Principles of Assessment for Project and Research Based Learning

    Science.gov (United States)

    Hunaiti, Ziad; Grimaldi, Silvia; Goven, Dharmendra; Mootanah, Rajshree; Martin, Louise

    2010-01-01

    Purpose: The purpose of this paper is to provide assessment guidelines which help to implement research-based education in science and technology areas, which would benefit from the quality of this type of education within this subject area. Design/methodology/approach: This paper is a reflection on, and analysis of, different aspects of…

  6. An integrated methodology for assessment and selection of the project risk response actions.

    Science.gov (United States)

    Seyedhoseini, Seyed Mohammad; Noori, Siamak; Hatefi, Mohammad Ali

    2009-05-01

    In a systematic process of project risk management, after risk assessment is implemented, the risk analysts encounter the phase of assessment and selection of the project risk response actions (RA). As indicated by many researchers, there are less systematic and well-developed solutions in the area of risk response assessment and selection. The present article introduces a methodology including a modeling approach with the objective of selecting a set of RA that minimizes the undesirable deviation from achieving the project scope. The developed objective function comprises the three key success criteria of a project, namely, time, quality, and cost. Our model integrates overall project management into the project risk response planning (P2RP). Furthermore, the proposed model stresses on an equivalent importance for both "risk" and "response." We believe that applying the proposed model helps the project risk analyst in most effective and efficient manner dealing with his or her complicated RA selection problems. The application of the proposed model was implemented in projects in the construction industry in which it showed tremendous time, cost, and quality improvements.

  7. Mid-Columbia Coho Salmon Reintroduction Feasibility Project : Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration; Washington (State) Department of Fish and Wildlife; Confederated Tribes and Bands of the Yakama Nation

    1999-01-01

    Before the Bonneville Power Administration (BPA) decides whether to fund a program to reintroduce coho salmon to mid-Columbia River basin tributaries, research is needed to determine the ecological risks and biological feasibility of such an effort. Since the early 1900s, the native stock of coho has been decimated in the tributaries of the middle reach of the Columbia River. The four Columbia River Treaty Tribes identified coho reintroduction in the mid-Columbia as a priority in the Tribal Restoration Plan. It is a comprehensive plan put forward by the Tribes to restore the Columbia River fisheries. In 1996, the Northwest Power Planning Council (NPPC) recommended the tribal mid-Columbia reintroduction project for funding by BPA. It was identified as one of fifteen high-priority supplementation projects for the Columbia River basin, and was incorporated into the NPPC`s Fish and Wildlife Program. The release of coho from lower Columbia hatcheries into mid-Columbia tributaries is also recognized in the Columbia River Fish Management Plan.

  8. Wildlife Impact Assessment Palisades Project, Idaho, Final Report.

    Energy Technology Data Exchange (ETDEWEB)

    Sather-Blair, Signe

    1985-02-01

    The Habitat Evaluation Procedures were used to evaluate pre- and post-construction habitat conditions of the US Bureau of Reclamation's Palisades Project in eastern Idaho. Eight evaluation species were selected with losses expressed in the number of Habitat Units (HU's). One HU is equivalent to one acre of prime habitat. The evaluation estimated that a loss of 2454 HU's of mule deer habitat, 2276 HU's of mink habitat, 2622 HU's of mallard habitat, 805 HU's of Canada goose habitat, 2331 HU's of ruffed grouse habitat, 5941 and 18,565 HU's for breeding and wintering bald eagles, and 1336 and 704 HU's for forested and scrub-shrub wetland nongame species occurred as a result of the project. The study area currently has 29 active osprey nests located around the reservoir and the mudflats probably provide more feeding habitat for migratory shore birds and waterfowl than was previously available along the river. A comparison of flow conditions on the South Fork of the Snake River below the dam between pre- and post-construction periods also could not substantiate claims that water releases from the dam were causing more Canada goose nest losses than flow in the river prior to construction. 41 refs., 16 figs., 9 tabs.

  9. Klamath County YMCA geothermal heating project environmental assessment

    Energy Technology Data Exchange (ETDEWEB)

    Shreve, J.H. (ed.)

    1979-07-10

    The YMCA Geothermal Heating project proposes to obtain approximately 57% of the total facility energy usage through direct application of the Klamath Falls KGRA. This will be accomplished through the design and construction of a retrofit and injection system for the utilization of an existing 110/sup 0/F geothermal energy source at the project site. The existing 2016 foot well will be outfitted with a turbine pump with variable speed drive. The well head will be enclosed by a 10' x 10' building. The geothermal fluid, pumped at a peak rate of 350 gpm will be transported to the YMCA Facility through 5'' diameter schedule 40 black iron pipe fitted with victaulic couplings for expansion. All underground supply pipes will be equipped with magnesium anodes for galvaic protection and will be insulted with 1'' thick calcium silicate insulation, with two layers of 45 number roofing felt applied with asphaltic compound. All supply lines within the building will be insulated with 1'' fiberglass insulation material with a cloth jacket. The fluids will pass through a heating coil and heat exchanger system to provide heat for the 30,000 square foot YMCA facility as well as for the 90,000 gallon swimming pool. The spent geothermal fluids will then be conveyed through a 4'' black iron return pipe to be returned to an acceptable aquifer through the 1500 foot injection well.

  10. An Annotated Bibliography on the Severely and Profoundly Mentally Retarded.

    Science.gov (United States)

    Cass, Michael, Comp.; Schilit, Jeffrey, Comp.

    Presented is an annotated bibliography with approximately 250 entries relating to the severely and profoundly retarded. Citations are listed alphabetically by author under the following categories: assessments, measurements, evaluations; associations; attending behavior; behavior modification; books; classical conditioning; cognitive development;…

  11. Towards Integration of End-User Tags with Professional Annotations

    NARCIS (Netherlands)

    Gligorov, R.; Baltussen, L.B.; Ossenbruggen, J.R. van; Aroyo, L.; Brinkerink, M.; Oomen, J.; Ees, A. van

    2010-01-01

    The goal of the paper is assessing the quality of end-user tags from a video labeling game as a first step in the process of integrating them with the annotations made by professionals. Tags lack precise meaning, whereas the terms and concepts the professionals are used to have a clearly defined sem

  12. Annotating BI Visualization Dashboards: Needs and Challenges

    OpenAIRE

    Elias, Micheline; Bezerianos, Anastasia

    2012-01-01

    International audience; Annotations have been identified as an important aid in analysis record-keeping and recently data discovery. In this paper we discuss the use of annotations on visualization dashboards, with a special focus on business intelligence (BI) analysis. In-depth interviews with experts lead to new annotation needs for multi-chart visualization systems, on which we based the design of a dashboard prototype that supports data and context aware annotations. We focus particularly ...

  13. Peer Assessment in Group Projects Accounting for Assessor Reliability by an Iterative Method

    Science.gov (United States)

    Ko, Sung-Seok

    2014-01-01

    This study proposes an advanced method to factor in the contributions of individual group members engaged in an integrated group project using peer assessment procedures. Conway et al. proposed the Individual Weight Factor (IWF) method for peer assessment which has been extensively developed over the years. However, most methods associated with…

  14. The Florida Community College Statewide Collection Assessment Project: Outcomes and Impact.

    Science.gov (United States)

    Perrault, Anna H.; Adams, Tina M.; Smith, Rhonda; Dixon, Jeannie

    2002-01-01

    Reports on the outcomes and impact of the Florida Community College Statewide Collection Assessment Project. Highlights include influences on the appropriation of additional funds; collection development decisions; collection weeding based on institution-specific collection assessment reports; and receipt and use of state legislative funding.…

  15. Are clickthrough data reliable as image annotations?

    NARCIS (Netherlands)

    Tsikrika, T.; Diou, C.; Vries, A.P. de; Delopoulos, A.

    2009-01-01

    We examine the reliability of clickthrough data as concept-based image annotations, by comparing them against manual annotations, for different concept categories. Our analysis shows that, for many concepts, the image annotations generated by using clickthrough data are reliable, with up to 90% of t

  16. Annotating images by mining image search results

    NARCIS (Netherlands)

    Wang, X.J.; Zhang, L.; Li, X.; Ma, W.Y.

    2008-01-01

    Although it has been studied for years by the computer vision and machine learning communities, image annotation is still far from practical. In this paper, we propose a novel attempt at model-free image annotation, which is a data-driven approach that annotates images by mining their search results

  17. Graph-based sequence annotation using a data integration approach.

    Science.gov (United States)

    Pesch, Robert; Lysenko, Artem; Hindle, Matthew; Hassani-Pak, Keywan; Thiele, Ralf; Rawlings, Christopher; Köhler, Jacob; Taubert, Jan

    2008-08-25

    The automated annotation of data from high throughput sequencing and genomics experiments is a significant challenge for bioinformatics. Most current approaches rely on sequential pipelines of gene finding and gene function prediction methods that annotate a gene with information from different reference data sources. Each function prediction method contributes evidence supporting a functional assignment. Such approaches generally ignore the links between the information in the reference datasets. These links, however, are valuable for assessing the plausibility of a function assignment and can be used to evaluate the confidence in a prediction. We are working towards a novel annotation system that uses the network of information supporting the function assignment to enrich the annotation process for use by expert curators and predicting the function of previously unannotated genes. In this paper we describe our success in the first stages of this development. We present the data integration steps that are needed to create the core database of integrated reference databases (UniProt, PFAM, PDB, GO and the pathway database Ara-Cyc) which has been established in the ONDEX data integration system. We also present a comparison between different methods for integration of GO terms as part of the function assignment pipeline and discuss the consequences of this analysis for improving the accuracy of gene function annotation. The methods and algorithms presented in this publication are an integral part of the ONDEX system which is freely available from http://ondex.sf.net/.

  18. Constructivism and the projective assessment of meaning in Rorschach administration.

    Science.gov (United States)

    Raskin, J D

    2001-08-01

    Constructivist perspectives on the Rorschach are outlined. I discuss ways in which constructivism complements and adds to existing Rorschach methodologies. It is suggested hat the constructivist emphasis on personally and socially constructed meanings is very consistent with many of the ways the Rorschach has been used and resonates with recent emphases on the Rorschach as a representational task. Furthermore, constructivist perspectives on Rorschach also provide an opportunity to supplement Exner's (1993, 1995) efforts to standardize and norm the Rorschach in a way that maintains the instrument's historic and admirable attention to relational elements of assessment and psychotherapy. I present a variety of meaning-based techniques for conducting Rorschach assessment, incorporating both the constructivist and social constructionist perspective.

  19. Tritium Facilities Modernization and Consolidation Project Process Waste Assessment (Project S-7726)

    Energy Technology Data Exchange (ETDEWEB)

    Hsu, R.H. [Westinghouse Savannah River Company, AIKEN, SC (United States); Oji, L.N.

    1997-11-14

    Under the Tritium Facility Modernization {ampersand} Consolidation (TFM{ampersand}C) Project (S-7726) at the Savannah River Site (SS), all tritium processing operations in Building 232-H, with the exception of extraction and obsolete/abandoned systems, will be reestablished in Building 233-H. These operations include hydrogen isotopic separation, loading and unloading of tritium shipping and storage containers, tritium recovery from zeolite beds, and stripping of nitrogen flush gas to remove tritium prior to stack discharge. The scope of the TFM{ampersand}C Project also provides for a new replacement R&D tritium test manifold in 233-H, upgrading of the 233- H Purge Stripper and 233-H/234-H building HVAC, a new 234-H motor control center equipment building and relocating 232-H Materials Test Facility metallurgical laboratories (met labs), flow tester and life storage program environment chambers to 234-H.

  20. Helicopter EMS Transport Outcomes Literature: Annotated Review of Articles Published 2007-2011.

    Science.gov (United States)

    Brown, Brandon S; Pogue, Korby A; Williams, Emily; Hatfield, Jesse; Thomas, Matthew; Arthur, Annette; Thomas, Stephen H

    2012-01-01

    Helicopter EMS (HEMS) and its possible association with outcomes improvement continues to be a subject of discussion. As is the case with other scientific discourse, debate over HEMS usefulness should be framed around an evidence-based assessment of the relevant literature. In an effort to facilitate the academic pursuit of assessment of HEMS utility, in late 2000 the National Association of EMS Physicians' (NAEMSP) Air Medical Task Force prepared annotated bibliographies of the HEMS-related outcomes literature. As a result of that work, two review articles, one covering HEMS use in nontrauma and the other in trauma, published in 2002 in Prehospital Emergency Care surveyed HEMS outcomes-related literature published between 1980 and mid-2000. The project was extended with two subsequent reviews covering the literature through 2006. This review continues the series, outlining outcomes-associated HEMS literature for the three-year period 2007 through the first half of 2011.

  1. Helicopter EMS transport outcomes literature: annotated review of articles published 2004-2006.

    Science.gov (United States)

    Thomas, Stephen H

    2007-01-01

    Helicopter EMS (HEMS) and its possible association with outcomes improvement continues to be a subject of debate. As is the case with other scientific endeavors, debate over HEMS usefulness should be framed around an evidence-based assessment of the relevant literature. In an effort to facilitate the academic pursuit of assessment of HEMS utility, in late 2000 the National Association of EMS Physicians' (NAEMSP) Air Medical Task Force prepared annotated bibliographies of the HEMS-related outcomes literature. As a result of that work, two review articles, one covering HEMS use in nontrauma and the other in trauma, published in 2002 in Prehospital Emergency Care surveyed HEMS outcomes-related literature published between 1980 and mid-2000. The project was extended with a 2004 review that covered the literature published between 2000 and 2003. The current review continues the series, outlining outcomes-associated HEMS literature from 2004 through 2006.

  2. Sustainability assessment of roadway projects under uncertainty using Green Proforma: An index-based approach

    Directory of Open Access Journals (Sweden)

    Adil Umer

    2016-12-01

    Full Text Available Growing environmental and socioeconomic concerns due to rapid urbanization, population growth and climate change impacts have motivated decision-makers to incorporate sustainable best practices for transportation infrastructure development and management. A “sustainable” transportation infrastructure implies that all the sustainability objectives (i.e., mobility, safety, resource efficiency, economy, ecological protection, environmental quality are adequately met during the infrastructure life cycle. State-of-the-art sustainability rating tools contain the best practices for the sustainability assessment of infrastructure projects. Generally, the existing rating tools are not well equipped to handle uncertainties associated with data limitations and expert opinion and cannot effectively adapt to site specific constraints for reliable sustainability assessment. This paper presents the development of a customizable tool, called “Green Proforma” for the sustainability assessment of roadway projects under uncertainties. For evaluating how well the project meets sustainability objectives, a hierarchical framework is used to develop the sustainability objective indices by aggregating the selected indicators with the help of fuzzy synthetic evaluation technique. These indices are further aggregated to attain an overall sustainability index for a roadway project. To facilitate the decision makers, a “Roadway Project Sustainometer” has been developed to illustrate how well the roadway project is meeting its sustainability objectives. By linking the sustainability objectives to measurable indicators, the “Green Proforma” paves the way for a practical approach in sustainable planning and management of roadway projects.

  3. Dictionary-driven protein annotation.

    Science.gov (United States)

    Rigoutsos, Isidore; Huynh, Tien; Floratos, Aris; Parida, Laxmi; Platt, Daniel

    2002-09-01

    Computational methods seeking to automatically determine the properties (functional, structural, physicochemical, etc.) of a protein directly from the sequence have long been the focus of numerous research groups. With the advent of advanced sequencing methods and systems, the number of amino acid sequences that are being deposited in the public databases has been increasing steadily. This has in turn generated a renewed demand for automated approaches that can annotate individual sequences and complete genomes quickly, exhaustively and objectively. In this paper, we present one such approach that is centered around and exploits the Bio-Dictionary, a collection of amino acid patterns that completely covers the natural sequence space and can capture functional and structural signals that have been reused during evolution, within and across protein families. Our annotation approach also makes use of a weighted, position-specific scoring scheme that is unaffected by the over-representation of well-conserved proteins and protein fragments in the databases used. For a given query sequence, the method permits one to determine, in a single pass, the following: local and global similarities between the query and any protein already present in a public database; the likeness of the query to all available archaeal/ bacterial/eukaryotic/viral sequences in the database as a function of amino acid position within the query; the character of secondary structure of the query as a function of amino acid position within the query; the cytoplasmic, transmembrane or extracellular behavior of the query; the nature and position of binding domains, active sites, post-translationally modified sites, signal peptides, etc. In terms of performance, the proposed method is exhaustive, objective and allows for the rapid annotation of individual sequences and full genomes. Annotation examples are presented and discussed in Results, including individual queries and complete genomes that were

  4. Approach to assessing local socio-cultural impacts using projections of population growth and composition

    Energy Technology Data Exchange (ETDEWEB)

    Baldwin, T. E.; Poetsch, R.

    1977-08-01

    All assessment of future domestic development projects assumes that the problems to be examined have been properly identified and defined before the application of a projection technique. An attempt is made to codify socio-cultural problems mentioned in literature and clarify how existing demographic projection techniques can be applied to assessing the problems. The relationship between changes in local population size and composition induced by in-migration and the potential for socio-cultural incompatibilities is described heuristically. For simplification, the problems expected to emerge from differences in demographic composition are classified into three categories: (1) service needs, such as those for housing, recreation, and education; (2) types of social organizations related to capacities for, or constraints on, reaping the benefits of rapid economic development and social changes (e.g., employment and income); and (3) attitudes, values, and cultural perspectives. These areas of concern are very broad, and quantitative projections of population size and composition are more easily related to the first than to the third. Although demographic projection provides a valuable tool for estimating future social change, the knowledge about cause and effect is not sufficient to support the quantification of socio-cultural impact. Therefore, the projections are used only as relative indicators and the assessments of socio-cultural impact based on them are qualitative only. Therefore, identification and assessment of socio-cultural impacts are a means of developing plans to overcome the expected problems.

  5. Advanced Flue Gas Desulfurization (AFGD) Demonstration Project, A DOE Assessment

    Energy Technology Data Exchange (ETDEWEB)

    National Energy Technology Laboratory

    2001-08-31

    The AFGD process as demonstrated by Pure Air at the Bailly Station offers a reliable and cost-effective means of achieving a high degree of SO{sub 2} emissions reduction when burning high-sulfur coals. Many innovative features have been successfully incorporated in this process, and it is ready for widespread commercial use. The system uses a single-loop cocurrent scrubbing process with in-situ oxidation to produce wallboard-grade gypsum instead of wet sludge. A novel wastewater evaporation system minimizes effluents. The advanced scrubbing process uses a common absorber to serve multiple boilers, thereby saving on capital through economies of scale. Major results of the project are: (1) SO{sub 2} removal of over 94 percent was achieved over the three-year demonstration period, with a system availability exceeding 99.5 percent; (2) a large, single absorber handled the combined flue gas of boilers generating 528 MWe of power, and no spares were required; (3) direct injection of pulverized limestone into the absorber was successful; (4) Wastewater evaporation eliminated the need for liquid waste disposal; and (5) the gypsum by-product was used directly for wallboard manufacture, eliminating the need to dispose of waste sludge.

  6. Automatic annotation of organellar genomes with DOGMA

    Energy Technology Data Exchange (ETDEWEB)

    Wyman, Stacia; Jansen, Robert K.; Boore, Jeffrey L.

    2004-06-01

    Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.

  7. Projection pursuit cluster model and its application in water quality assessment

    Institute of Scientific and Technical Information of China (English)

    WANG Shun-jiu; YANG Zhi-feng; DING Jing

    2004-01-01

    One of the difficulties frequently encountered in water quality assessment is that there are many factors and they cannot be assessed according to one factor, all the effect factors associated with water quality must be used. In order to overcome this issues the projection pursuit principle is introduced into water quality assessment, and projection pursuit cluster(PPC) model is developed in this study. The PPC model makes the transition from high dimension to one-dimension. In other words, based on the PPC model, multifactor problem can be converted to one factor problem. The application of PPC model can be divided into four parts: (1) to estimate projection index function ; (2) to find the right projection direction; (3) to calculate projection characteristic value of the sample , and (4) to draw comprehensive analysis on the basis of . On the other hand, the empirical formula of cutoff radius is developed, which is benefit for the model to be used in practice. Finally, a case study of water quality assessment is proposed in this paper. The results showed that the PPC model is reasonable, and it is more objective and less subjective in water quality assessment. It is a new method for multivariate problem comprehensive analysis.

  8. Certifying cost annotations in compilers

    CERN Document Server

    Amadio, Roberto M; Régis-Gianas, Yann; Saillard, Ronan

    2010-01-01

    We discuss the problem of building a compiler which can lift in a provably correct way pieces of information on the execution cost of the object code to cost annotations on the source code. To this end, we need a clear and flexible picture of: (i) the meaning of cost annotations, (ii) the method to prove them sound and precise, and (iii) the way such proofs can be composed. We propose a so-called labelling approach to these three questions. As a first step, we examine its application to a toy compiler. This formal study suggests that the labelling approach has good compositionality and scalability properties. In order to provide further evidence for this claim, we report our successful experience in implementing and testing the labelling approach on top of a prototype compiler written in OCAML for (a large fragment of) the C language.

  9. Application of system dynamics for assessment of sustainable performance of construction projects

    Institute of Scientific and Technical Information of China (English)

    SHEN L.Y.; WU Y.Z.; CHAN E.H.W.; HAO J.L.

    2005-01-01

    Sustainable performance is expected to become a major factor when examining the feasibility of a construction project in terms of its life cycle performance. The study on which this paper is based developed a simulation model, using system dynamics methodology, to assess the sustainable performance of projects. Three major factors are used to examine project sustainable performance (PSP): the sustainability of economic development (E), the sustainability of social development (S), and the sustainability of environmental development (En). Sustainable development ability (SDA) was used as a prototype to evaluate the case. This paper explains and demonstrates the procedures used to develop the model and finally offers an approach for assessing the feasibility of a construction project in terms of its sustainable performance.

  10. Corpus Annotation for Parser Evaluation

    OpenAIRE

    CARROLL, JOHN; Minnen, Guido; Briscoe, Ted

    1999-01-01

    We describe a recently developed corpus annotation scheme for evaluating parsers that avoids shortcomings of current methods. The scheme encodes grammatical relations between heads and dependents, and has been used to mark up a new public-domain corpus of naturally occurring English text. We show how the corpus can be used to evaluate the accuracy of a robust parser, and relate the corpus to extant resources.

  11. Formation of Criteria of Assessment of Infrastructure Projects of Sea Ports Development

    Directory of Open Access Journals (Sweden)

    Logutova Tamara G.

    2014-01-01

    Full Text Available The spectrum of criteria, by which assessment of tender offers of projects of state-private partnership in the port industry is carried out, includes a small but capacious set of indicators of financial and economic efficiency and qualification level of contenders. However, the study of foreign methods of assessment of projects in sea ports and domestic experience of carrying out tenders in other industries shows that a more clear division of assessment of both tender offers and contenders is rational. The article uses some methods and approaches to scientific study – generalisation, systematisation and analysis of foreign and domestic experience of carrying out tenders and acts of law. In the result the article forms a scheme of assessment of tender offers and investors and also offers an algorithm of calculation of the integral tender assessment, based on division of tender criteria by four groups: technical and economic, financial (for a tender offer, financial and investment, and organisational (for investors. The offered aspects of improvement of methods of tender selection of projects, realised in the port industry with the help of the mechanism of state-private partnership, would facilitate a more balanced and optimal selection of the best offer not only from the point of view of its content, but also the characteristic of the investor that proposes it. On the other hand, the use of the common, successfully tested under different conditions of project realisation, numerical method of assessment would be the guarantee of applicability of the of the proposed measures.

  12. USGS National Assessment of Oil and Gas Project - Shale Gas Assessment Units

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The U.S. Geological Survey has compiled a map of shale gas assessments in the United States that were completed by 2012, such assessments having been included as...

  13. Summary results of an assessment of research projects in the superconductivity for electric power systems program

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1992-10-01

    The Office of Program Analysis undertook an assessment of 37 research projects sponsored by the High Temperature Superconductivity Program. This report summarizes the results of the review. Rating factors included scientific and technical merit, mission relevance, appropriateness and level of innovation, quality of project team, productivity, and probable impact on the program`s mission. Some research needs and opportunities are described that were identified by the reviewers in the areas of wire development, deposited film technology, and systems development.

  14. Joint Solar Power Industry and Department of Energy Solar Resource and Meteorological Assessment Project (SOLRMAP)

    Science.gov (United States)

    Wilcox, Steve; Myers, Daryl

    2009-08-01

    The U.S. Department of Energy's National Renewable Energy Laboratory has embarked on a collaborative effort with the solar industry to establish high quality solar and meteorological measurements. This Solar Resource and Meteorological Assessment Project (SOLRMAP) provides high quality measurements to support deployment of concentrating solar thermal power projects in the United States. The no-funds-exchanged collaboration brings NREL solar resource assessment expertise together with industry needs for measurements. The end result will be high quality data sets to support the financing, design, and monitoring of large scale solar power projects for industry in addition to research-quality data for NREL model development. NREL provides consultation for instrumentation and station deployment, along with instrument calibrations, data acquisition, quality assessment, data distribution, and summary reports. Industry participants provide equipment, infrastructure, and station maintenance.

  15. Assessing reliability of regional climate projections: the case of Indian monsoon.

    Science.gov (United States)

    Ramesh, K V; Goswami, Prashant

    2014-02-12

    Projections of climate change are emerging to play major roles in many applications. However, assessing reliability of climate change projections, especially at regional scales, remains a major challenge. An important question is the degree of progress made since the earlier IPCC simulations (CMIP3) to the latest, recently completed CMIP5. We consider the continental Indian monsoon as an example and apply a hierarchical approach for assessing reliability, using the accuracy in simulating the historical trend as the primary criterion. While the scope has increased in CMIP5, there is essentially no improvement in skill in projections since CMIP3 in terms of reliability (confidence). Thus, it may be necessary to consider acceptable models for specific assessment rather than simple ensemble. Analysis of climate indices shows that in both CMIP5 and CMIP3 certain common processes at large and regional scales as well as slow timescales are associated with successful simulation of trend and mean.

  16. ASSESSING THE IMPACT OF THE HIGHWAY 25 EXPANSION PROJECT ON AIR QUALITY IN MONTREAL USING GIS

    Directory of Open Access Journals (Sweden)

    Mioara CHIABURU

    2010-06-01

    Full Text Available Assessing the impact of the highway 25 expansion project on air quality in montreal using gis. The aim of the paper is to assess local air pollution implications of the Highway 25 expansion project from Montreal. The basic concept of the roadway air dispersion model consists in calculating air pollutant levels in the vicinity of a highway by considering it as a line source. To fulfill this assessment, GIS software was used in order to determine pollutant distribution around the study area based on data collected by existing air monitoring stations located in the City of Montreal. GIS interpolation methods, notably Kriging and Inverse Distance Weighted (IDW, was used to generate maps of pollutant concentrations across the study area. From the results, recommendations will be made in regards to the project and appropriate mitigatory alternatives suggested.

  17. Assessing the wind energy potential projects in Algeria

    Energy Technology Data Exchange (ETDEWEB)

    Himri, Y. [Electricity and Gas National Enterprise (SONELGAZ) Bechar (Algeria); Laboratory Renewable Energy and Thermal, University of Bechar (Algeria); Himri, S. [University of Bechar, Department of Fundamental Sciences (Algeria); Boudghene Stambouli, A. [University of Sciences and Technology of Oran, Department of Electronic (Algeria)

    2009-10-15

    A research program is under way in the SONELGAZ R and D Office with the aim of studying the potential of wind energy in Algeria. This paper presents an analysis of recently collected hourly wind data over a period of almost 5 years between 2002 and 2006, from four selected sites as well as preliminary evaluation of the wind energy potential. The results showed that Tindouf and Dely Brahim sites have higher wind energy potential with annual wind speed average of 5.8 and 5.7 m/s respectively at height of 17 m above ground level (AGL). The two sites are candidates for remote area wind energy applications. The Ouled Fayet and Marsa Ben M'hidi sites wind speed data indicated that the two sites have lower annual wind speed averages between 3.9-4.7 m/s at 17 m AGL. That makes the two sites candidates for installation of windmills to provide water for drinking and small scale irrigation purposes Brief description of the equipment, is also performed. Finally the aim of this work is only a preliminary study in order to assess wind energy analysis in Algeria and give useful insights to engineers and experts dealing with wind energy. (author)

  18. Bayesian-network-based safety risk assessment for steel construction projects.

    Science.gov (United States)

    Leu, Sou-Sen; Chang, Ching-Miao

    2013-05-01

    There are four primary accident types at steel building construction (SC) projects: falls (tumbles), object falls, object collapse, and electrocution. Several systematic safety risk assessment approaches, such as fault tree analysis (FTA) and failure mode and effect criticality analysis (FMECA), have been used to evaluate safety risks at SC projects. However, these traditional methods ineffectively address dependencies among safety factors at various levels that fail to provide early warnings to prevent occupational accidents. To overcome the limitations of traditional approaches, this study addresses the development of a safety risk-assessment model for SC projects by establishing the Bayesian networks (BN) based on fault tree (FT) transformation. The BN-based safety risk-assessment model was validated against the safety inspection records of six SC building projects and nine projects in which site accidents occurred. The ranks of posterior probabilities from the BN model were highly consistent with the accidents that occurred at each project site. The model accurately provides site safety-management abilities by calculating the probabilities of safety risks and further analyzing the causes of accidents based on their relationships in BNs. In practice, based on the analysis of accident risks and significant safety factors, proper preventive safety management strategies can be established to reduce the occurrence of accidents on SC sites.

  19. Lower Yakima Valley Wetlands and Riparian Restoration Project. Final Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration

    1994-10-01

    Bonneville Power Administration (BPA) proposes to fund that portion of the Washington Wildlife Mitigation Agreement pertaining to the Lower Yakima Valley Wetlands and Riparian Restoration Project (Project) in a cooperative effort with the Yakama Indian Nation and the Bureau of Indian Affairs (BIA). The proposed action would allow the sponsors to secure property and conduct wildlife management activities for the Project within the boundaries of the Yakama Indian Reservation. This Environmental Assessment examines the potential environmental effects of acquiring and managing property for wildlife and wildlife habitat within a large 20, 340 hectare (50, 308 acre) project area. As individual properties are secured for the Project, three site-specific activities (habitat enhancement, operation and maintenance, and monitoring and evaluation) may be subject to further site-specific environmental review. All required Federal/Tribal coordination, permits and/or approvals would be obtained prior to ground disturbing activities.

  20. Functional annotation of hierarchical modularity.

    Directory of Open Access Journals (Sweden)

    Kanchana Padmanabhan

    Full Text Available In biological networks of molecular interactions in a cell, network motifs that are biologically relevant are also functionally coherent, or form functional modules. These functionally coherent modules combine in a hierarchical manner into larger, less cohesive subsystems, thus revealing one of the essential design principles of system-level cellular organization and function-hierarchical modularity. Arguably, hierarchical modularity has not been explicitly taken into consideration by most, if not all, functional annotation systems. As a result, the existing methods would often fail to assign a statistically significant functional coherence score to biologically relevant molecular machines. We developed a methodology for hierarchical functional annotation. Given the hierarchical taxonomy of functional concepts (e.g., Gene Ontology and the association of individual genes or proteins with these concepts (e.g., GO terms, our method will assign a Hierarchical Modularity Score (HMS to each node in the hierarchy of functional modules; the HMS score and its p-value measure functional coherence of each module in the hierarchy. While existing methods annotate each module with a set of "enriched" functional terms in a bag of genes, our complementary method provides the hierarchical functional annotation of the modules and their hierarchically organized components. A hierarchical organization of functional modules often comes as a bi-product of cluster analysis of gene expression data or protein interaction data. Otherwise, our method will automatically build such a hierarchy by directly incorporating the functional taxonomy information into the hierarchy search process and by allowing multi-functional genes to be part of more than one component in the hierarchy. In addition, its underlying HMS scoring metric ensures that functional specificity of the terms across different levels of the hierarchical taxonomy is properly treated. We have evaluated our

  1. Province, Total Petroleum System and Assessment Unit Boundaries from the 2009-2011 World Petroleum Resources Project

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The boundaries illustrated by these Assessment Units are the result of geologic studies conducted by the World Petroleum Resources Project, 2009-2011 (Project). The...

  2. Environmental Impact Assessment: Uri hydroelectric power project on River Jhelum in Kashmir, India

    Energy Technology Data Exchange (ETDEWEB)

    Nyman, L.

    1995-09-01

    This report is an Initial Aquatic Environmental Impact Assessment of the Uri Hydroelectric Power Project on River Jhelum in Kashmir, India. It includes the Terms of Reference of the assessment, a discussion on biodiversity and threats to it, the environmental indicators used to monitor and predict the impacts, a description of the physical, chemical and biological prerequisites of the River Jhelum ecosystem, a description of the survey sites chosen, and an overview of the present fish and bottom fauna. Finally, there are sections on the potential impacts on biota of the Uri Project and a list of proposals for how mitigating and enhancing measures could be enforced

  3. 41 CFR 102-80.75 - Who assesses environmental issues in Federal construction and lease construction projects?

    Science.gov (United States)

    2010-07-01

    ... environmental issues in Federal construction and lease construction projects? 102-80.75 Section 102-80.75 Public... Management Assessment of Environmental Issues § 102-80.75 Who assesses environmental issues in Federal construction and lease construction projects? Federal agencies must assess required environmental...

  4. Evaluation and selection of decision-making methods to assess landfill mining projects.

    Science.gov (United States)

    Hermann, Robert; Baumgartner, Rupert J; Vorbach, Stefan; Ragossnig, Arne; Pomberger, Roland

    2015-09-01

    For the first time in Austria, fundamental technological and economic studies on recovering secondary raw materials from large landfills have been carried out, based on the 'LAMIS - Landfill Mining Austria' pilot project. A main focus of the research - and the subject of this article - was to develop an assessment or decision-making procedure that allows landfill owners to thoroughly examine the feasibility of a landfill mining project in advance. Currently there are no standard procedures that would sufficiently cover all the multiple-criteria requirements. The basic structure of the multiple attribute decision making process was used to narrow down on selection, conceptual design and assessment of suitable procedures. Along with a breakdown into preliminary and main assessment, the entire foundation required was created, such as definitions of requirements to an assessment method, selection and accurate description of the various assessment criteria and classification of the target system for the present 'landfill mining' vs. 'retaining the landfill in after-care' decision-making problem. Based on these studies, cost-utility analysis and the analytical-hierarchy process were selected from the range of multiple attribute decision-making procedures and examined in detail. Overall, both methods have their pros and cons with regard to their use for assessing landfill mining projects. Merging these methods or connecting them with single-criteria decision-making methods (like the net present value method) may turn out to be reasonable and constitute an appropriate assessment method.

  5. SKI SITE-94. Deep Repository Performance Assessment Project Volume I and II

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-12-01

    The function of SITE-94 is to provide the Swedish Nuclear Power Inspectorate (SKI) with the capacity and supporting knowledge needed for reviewing the Swedish nuclear industry`s R and D programs and for reviewing license applications, as stipulated in Swedish legislation. The report is structured as a Performance Assessment exercise needed for input to decisions regarding repository safety, but the SITE-94 is not a safety assessment or a model for future assessments to be undertaken by the prospective licensee. The specific project objectives of SITE-94 comprise site evaluation, performance assessment methodology, canister integrity and radionuclide release and transport calculations. The report gives a detailed description of the many inter-related studies undertaken as part of the research project. As a general conclusion it is noted that the SITE-94 project has significantly advanced SKI`s capability of reviewing performance assessments and has led to the development of a tool-kit for carrying out assessment calculations, both in terms of numerical and scoping analyses. The study has highlighted a number of key issues for safety assessment (and consequently for disposal system design): Canister performance; Derived parameters of geosphere retention properties; Spatial variability of groundwater flow and geochemistry of migration paths; Time dependency (more emphasis on transient, time-dependent processes); Buffer evolution over long time. 488 refs.

  6. OntoPIN: an ontology-annotated PPI database.

    Science.gov (United States)

    Guzzi, Pietro Hiram; Veltri, Pierangelo; Cannataro, Mario

    2013-09-01

    Protein-protein interaction (PPI) data stored in publicly available databases are queried by the use of simple query interfaces allowing only key-based queries. A typical query on such databases is based on the use of protein identifiers and enables the retrieval of one or more proteins. Nevertheless, a lot of biological information is available and is spread on different sources and encoded in different ontologies such as Gene Ontology. The integration of existing PPI databases and biological information may result in richer querying interfaces and successively could enable the development of novel algorithms that may use biological information. The OntoPIN project showed the effectiveness of the introduction of a framework for the ontology-based management and querying of Protein-Protein Interaction Data. The OntoPIN framework first merges PPI data with annotations extracted from existing ontologies (e.g. Gene Ontology) and stores annotated data into a database. Then, a semantic-based query interface enables users to query these data by using biological concepts. OntoPIN allows: (a) to extend existing PPI databases by using ontologies, (b) to enable a key-based querying of annotated data, and (c) to offer a novel query interface based on semantic similarity among annotations.

  7. Application of Particle Swarm Optimization to Formative E-Assessment in Project Management

    Directory of Open Access Journals (Sweden)

    Maria-Iuliana DASCALU

    2011-01-01

    Full Text Available The current paper describes the application of Particle Swarm Optimization algorithm to the formative e-assessment problem in project management. The proposed approach resolves the issue of personalization, by taking into account, when selecting the item tests in an e-assessment, the following elements: the ability level of the user, the targeted difficulty of the test and the learning objectives, represented by project management concepts which have to be checked. The e-assessment tool in which the Particle Swarm Optimization algorithm is integrated is also presented. Experimental results and comparison with other algorithms used in item tests selection prove the suitability of the proposed approach to the formative e-assessment domain. The study is presented in the framework of other evolutionary and genetic algorithms applied in e-education.

  8. Meeting CCS communication challenges head-on: Integrating communications, planning, risk assessment, and project management

    Science.gov (United States)

    Greenberg, S.; Gauvreau, L.; Hnottavange-Telleen, K.; Finley, R.; Marsteller, S.

    2011-01-01

    The Midwest Geological Sequestration Consortium, Schlumberger Carbon Services, and Archer Daniels Midland has implemented a comprehensive communications plan at the Illinois Basin - Decatur Project (IBDP), a one million metric tonne Carbon Capture and Storage project in Decatur, IL, USA funded by the U.S. Department of Energy's National Energy Technology Laboratory. The IBDP Communication Plan includes consortium information, funding and disclaimer citations, description of target audiences, media communications guidelines, paper and presentations guidelines, site visit information, crisis communication, on-site photography regulations, and other components. The creation, development, and implementation processes for the IBDP Communication Plan (the Plan) are shared in this paper. New communications challenges, such as how to address add-on research requests, data sharing and management, scope increase, and contract agreements have arisen since the Plan was completed in January 2009, resulting in development of new policies and procedures by project management. Integrating communications planning, risk assessment, and project management ensured that consistent, factual information was developed and incorporated into project planning, and constitutes the basis of public communications. Successful integration has allowed the IBDP to benefit from early identification and mitigation of the potential project risks, which allows more time to effectively deal with unknown and unidentified risks that may arise. Project risks and risks associated with public perception can be managed through careful planning and integration of communication strategies into project management and risk mitigation. ?? 2011 Published by Elsevier Ltd.

  9. Dietary exposure assessments for children in europe (the EXPOCHI project): rationale, methods and design

    OpenAIRE

    Huybrechts, Inge; Sioen, Isabelle; Boon, Polly E; Ruprich, Jiri; Lafay, Lionel; Turrini, Aida; Amiano, Pilar; Hirvonen, Tero; Neve, Melissa; Arcella, Davide; Moschandreas, Joanna; Westerlund, Anna; Ribas-Barba, Lourdes; Hilbig, Annett; Papoutsou, Stalo

    2011-01-01

    Background/purpose The number of dietary exposure assessment studies focussing on children is very limited. Children are however a vulnerable group due to their higher food consumption level per kg body weight. Therefore, the EXPOCHI project aims [1] to create a relational network of individual food consumption databases in children, covering different geographical areas within Europe, and [2] to use these data to assess the usual intake of lead, chromium, selenium and food colours. Methods E...

  10. Social impact assessment in mining projects in Northern Finland: Comparing practice to theory

    Energy Technology Data Exchange (ETDEWEB)

    Suopajärvi, Leena, E-mail: leena.suopajarvi@ulapland.fi

    2013-09-15

    The paper discusses social impact assessments (SIA) for mining projects in light of the international principles and guidelines for such assessments and the academic literature in the field. The data consist of environmental impact assessment (EIA) programmes and reports for six mining projects that have started up in northern Finland in the 2000s. A first observation is that the role of the SIAs in the EIA programmes and reports studied was quite minor: measured in number of pages, the assessments account for three or four percent of the total. This study analyses the data collection, research methodology and conceptual premises used in the SIAs. It concludes that the assessments do not fully meet the high standards of the international principles and guidelines set out for them: for example, elderly men are over-represented in the data and no efforts were made to identify and bring to the fore vulnerable groups. Moreover, the reliability of the assessments is difficult to gauge, because the qualitative methods are not described and where quantitative methods were used, details such as non-response rates to questionnaires are not discussed. At the end of the paper, the SIAs are discussed in terms of Jürgen Habermas' theory of knowledge interests, with the conclusion that the assessments continue the empirical analytical tradition of the social sciences and exhibit a technical knowledge interest. -- Highlights: • Paper investigates social impact assessments in Finnish mining projects. • Role of social impact assessment is minor in whole EIA-process. • Mining SIAs give the voice for elderly men, vulnerable groups are not identified. • Assessment of SIAs is difficult because of lacking transparency in reporting. • SIAs belong to empirical analytical tradition with technical knowledge interest.

  11. Does assessing project work enhance the validity of qualifications? The case of GCSE coursework

    Directory of Open Access Journals (Sweden)

    Victoria Crisp

    2009-03-01

    Full Text Available This paper begins by describing current views on validity and how certain assessment forms, such as school-based project work, may enhance validity. It then touches on debates about the dependability of assessment by teachers. GCSEs and GCSE coursework are then described along with the reasons for the inclusion of coursework in many GCSEs. Crooks, Kane and Cohen’s (1996 chain model of eight linked stages of validity enquiry is then used as a structure within which to consider the validity of project work assessments, and specifically GCSE coursework assessment, drawing on the available literature. Strengths for validity include the ability to assess objectives that are difficult to test in written examinations, promoting additional skills such as critical thinking, creativity and independent thinking, and improving motivation. Possible threats to validity include the potential for internet and other types of plagiarism, tasks becoming overly structured and formulaic thus reducing the positive impact on learning, and the potentially heavy workload for teachers and students. The paper concludes by describing current policy changes in the UK with regard to GCSE coursework and relates this to strong and weak validity links for project work as a mode of assessment.

  12. An evaluation of GO annotation retrieval for BioCreAtIvE and GOA

    Directory of Open Access Journals (Sweden)

    Camon Evelyn B

    2005-05-01

    Full Text Available Abstract Background The Gene Ontology Annotation (GOA database http://www.ebi.ac.uk/GOA aims to provide high-quality supplementary GO annotation to proteins in the UniProt Knowledgebase. Like many other biological databases, GOA gathers much of its content from the careful manual curation of literature. However, as both the volume of literature and of proteins requiring characterization increases, the manual processing capability can become overloaded. Consequently, semi-automated aids are often employed to expedite the curation process. Traditionally, electronic techniques in GOA depend largely on exploiting the knowledge in existing resources such as InterPro. However, in recent years, text mining has been hailed as a potentially useful tool to aid the curation process. To encourage the development of such tools, the GOA team at EBI agreed to take part in the functional annotation task of the BioCreAtIvE (Critical Assessment of Information Extraction systems in Biology challenge. BioCreAtIvE task 2 was an experiment to test if automatically derived classification using information retrieval and extraction could assist expert biologists in the annotation of the GO vocabulary to the proteins in the UniProt Knowledgebase. GOA provided the training corpus of over 9000 manual GO annotations extracted from the literature. For the test set, we provided a corpus of 200 new Journal of Biological Chemistry articles used to annotate 286 human proteins with GO terms. A team of experts manually evaluated the results of 9 participating groups, each of which provided highlighted sentences to support their GO and protein annotation predictions. Here, we give a biological perspective on the evaluation, explain how we annotate GO using literature and offer some suggestions to improve the precision of future text-retrieval and extraction techniques. Finally, we provide the results of the first inter-annotator agreement study for manual GO curation, as well as an

  13. Using "EC-Assess" to Assess a Small Biofuels Project in Honduras

    Science.gov (United States)

    Ngassa, Franklin Chamda

    2010-01-01

    Biofuels may contribute to both rural economic development and climate change mitigation and adaptation. The Gota Verde Project in Yoro, Honduras, attempts to demonstrate the technical and economic feasibility of small-scale biofuel production for local use by implementing a distinctive approach to feedstock production that encourages small farm…

  14. Hawaii energy strategy project 3: Renewable energy resource assessment and development program

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-11-01

    RLA Consulting (RLA) has been retained by the State of Hawaii Department of Business, Economic Development and Tourism (DBEDT) to conduct a Renewable Energy Resource Assessment and Development Program. This three-phase program is part of the Hawaii Energy Strategy (HES), which is a multi-faceted program intended to produce an integrated energy strategy for the State of Hawaii. The purpose of Phase 1 of the project, Development of a Renewable Energy Resource Assessment Plan, is to better define the most promising potential renewable energy projects and to establish the most suitable locations for project development in the state. In order to accomplish this goal, RLA has identified constraints and requirements for renewable energy projects from six different renewable energy resources: wind, solar, biomass, hydro, wave, and ocean thermal. These criteria were applied to areas with sufficient resource for commercial development and the results of Phase 1 are lists of projects with the most promising development potential for each of the technologies under consideration. Consideration of geothermal energy was added to this investigation under a separate contract with DBEDT. In addition to the project lists, a monitoring plan was developed with recommended locations and a data collection methodology for obtaining additional wind and solar data. This report summarizes the results of Phase 1. 11 figs., 22 tabs.

  15. A Management Maturity Model (MMM for project-based organisational performance assessment

    Directory of Open Access Journals (Sweden)

    Craig Langston

    2016-12-01

    Full Text Available Common sense suggests that organisations are more likely to deliver successful projects if they have systems in place that reflect a mature project environment based on a culture of continuous improvement. This paper develops and discusses a Management Maturity Model (MMM to assess the maturity of project management organisations through a customisable, systematic, strategic and practical methodology inspired from the seminal work of Darwin, Deming, Drucker and Daniel. The model presented is relevant to organisations, such as construction and engineering companies, that prefer to use the Project Management Body of Knowledge (PMBOK™ Guide published by the Project Management Institute (PMI, but without the disadvantages of excessive time and cost commitments and a ‘one size fits all’ approach linked to rigid increments of maturity. It offers a game-changing advance in the application of project-based organisational performance assessment compared to existing market solutions that are unnecessarily complex. The feasibility of MMM is field-tested using a medium-sized data centre infrastructure firm in Tehran.

  16. Assessment of uncertainties in risk analysis of chemical establishments. The ASSURANCE project. Final summary report

    DEFF Research Database (Denmark)

    Lauridsen, K.; Kozine, Igor; Markert, Frank;

    2002-01-01

    This report summarises the results obtained in the ASSURANCE project (EU contract number ENV4-CT97-0627). Seven teams have performed risk analyses for the same chemical facility, an ammonia storage. The EC's Joint Research Centre at Ispra and RisøNational Laboratory co-ordinated the exercise...... on the ranking among the adherents of the probabilistic approach. Breaking down the modelling of both frequencyand consequence assessments into suitably small elements and conducting case studies allowed identifying root causes of uncertainty in the final risk assessments. Large differences were found in both...... the frequency assessments and in the assessment ofconsequences. The report gives a qualitative assessment of the importance to the final calculated risk of uncertainties in assumptions made, in the data and the calculation methods used. This assessment can serve as a guide to areas where, in particular...

  17. Assessment of Flooded Areas Projections and Floods Potential Impacts Applying Remote Sensing Imagery and Demographic Data

    Science.gov (United States)

    Rodriguez, D. A.; Carriello, F.; Fernandes, P. J. F.; Garofolo Lopes, L.; Siqueira Júnior, J. L.

    2016-06-01

    Assessing vulnerability and potential impacts associated with extreme discharges requires an accurate topographic description in order to estimate the extension of flooded areas. However, in most populated regions, topographic data obtained by in-situ measurements is not available. In this case, digital elevation models derived from remote sensing date are usually applied. Moreover, this digital elevation models have intrinsic errors that introduce bigger uncertainty in results than the associated to hydrological projections. On the other hand, estimations of flooded areas through remote sensing images provide accurate information, which could be used for the construction of river level-flooded area relationships regarding vulnerability assessment. In this work, this approach is applied for the city of Porto Velho in the Brazilian Amazonia to assess potential vulnerability to floods associated with climate change projections. The approach is validated using census data, provided by the Brazilian Institute of Geography and Statistics, and information about socio-economical injuries associated to historical floods, provided by the Brazilian Civil Defence. Hydrological projections under climate change are carried out using several downscaling of climate projections as inputs in a hydrological model. Results show more accurate estimation of flood impacts than the obtained using digital elevation models derivate from remote sensing data. This reduces uncertainties in the assessment of vulnerability to floods associated with climate change in the region.

  18. An Assessment of Experiential Learning of Global Poverty Issues through International Service Projects

    Science.gov (United States)

    Le, Quan V.; Raven, Peter V.

    2015-01-01

    Service learning has been used to supplement a standard business curriculum, but not typically in an international business context. We report the results of two short-term study abroad programs in which we incorporated service learning projects, one in Cambodia and the other in Vietnam. Our objective is to assess how we organized and delivered…

  19. Using a Web-Based Portfolio Assessment System to Elevate Project-Based Learning Performances

    Science.gov (United States)

    Chang, Chi-Cheng; Tseng, Kuo-Hung

    2011-01-01

    This study examines the effect of a Web-based portfolio assessment system on the performances of students undertaking project-based learning (PBL). The research targets were 60 students from two grade-8 classes taking senior high school computer courses. The experimental group comprised 30 students, who used the system to perform PBL and…

  20. Substituted plan analysis in the environmental impact assessment of Yongchuan wastewater treatment project

    Institute of Scientific and Technical Information of China (English)

    FANG Jun-hua

    2006-01-01

    Substituted plan in the environmental impact assessment (EIA) mainly means the treatment technology and the substituted site of plant, and it also includes the many kinds of environment protection measures. This paper will make detailed analysis on the treatment technology, the substituted site of plant, the purpose of discharged water and the dispose of sludge in the Yongchuan wastewater treatment project.

  1. Tank 241-C-106 sluicing project W-320 integrity assessment report

    Energy Technology Data Exchange (ETDEWEB)

    Symons, G.A., Fluor Daniel Hanford

    1997-02-11

    This Integrity Assessment Report is prepared by ICF Kaiser Hanford Co. (ICFKH) for Westinqhouse Hanford Company (WHC), operations contractor and the Department of Energy (DOE), the system owner. It is a revision of the original report dated 10/26/94 (ICFKH Transmittal TR-W-320-295). The original project scope has been modified, necessitating with WAC-173-303-640.

  2. POD generator project: a numerical assessment of the inspection of fatigue cracks using TOFD

    NARCIS (Netherlands)

    Bloom, J.G.P.; Stelwagen, U.; Mast, A.; Volker, A.W.F.

    2009-01-01

    Risk based inspection strategies rely on detailed knowledge of the performance of inspection techniques. The objective of the "POD generator" project is to develop a numerical modeling approach to assess the effectiveness of specific inspection techniques. Simulation offers flexibility and reliabili

  3. OVERVIEW OF THE MARK TWAIN LAKE/SALT RIVER BASIN CONSERVATION EFFECTS ASSESSMENT PROJECT

    Science.gov (United States)

    The Mark Twain Lake/Salt River Basin was selected as one of 12 USDA-Agricultural Research Service benchmark watersheds for the Conservation Effects Assessment Project (CEAP) because of documented soil and water quality problems and broad stakeholder interest. The basin is located in northeastern Mis...

  4. Environmental assessment: Geokinetics, Inc. oil shale research project, Uintah County, Utah

    Energy Technology Data Exchange (ETDEWEB)

    1979-12-01

    Geokinetics, Inc. (GKI) proposes to complete the remaining experimental program to develop the LOFRECO modified horizontal in situ oil shale retorting process. This Environmental Assessment Report addresses the impacts of the project, located in a remote area of east-central Utah, about 70 miles south of both Vernal and Roosevelt.

  5. Field Assessment of the Village Green Project: An Autonomous Community Air Quality Monitoring System

    Science.gov (United States)

    Recent findings on air pollution levels in communities motivate new technologies to assess air pollution at finer spatial scale. The Village Green Project (VGP) is a novel approach using commercially-available technology for long-term community environments air pollution measure...

  6. Practicing Learner-Centered Teaching: Pedagogical Design and Assessment of a Second Life Project

    Science.gov (United States)

    Schiller, Shu Z.

    2009-01-01

    Guided by the principles of learner-centered teaching methodology, a Second Life project is designed to engage students in active learning of virtual commerce through hands-on experiences and teamwork in a virtual environment. More importantly, an assessment framework is proposed to evaluate the learning objectives and learning process of the…

  7. Assessing European capacity for geological storage of carbon dioxide-the EU GeoCapacity project

    NARCIS (Netherlands)

    Vangkilde-Pedersen, T.; Anthonsen, K.L.; Smith, N.; Kirk, K.; Neele, F.; Meer, B. van der; Le Gallo, Y. le; Bossie-Codreanu, D.; Wojcicki, A.; Nindre, Y.-M. le; Hendriks, C.; Dalhoff, F.; Peter Christensen, N.

    2009-01-01

    The focus of the GeoCapacity project is GIS mapping of CO2 point sources, infrastructure and geological storage in Europe. The main objective is to assess the European capacity for geological storage of CO2 in deep saline aquifers, oil and gas structures and coal beds. Other priorities are further d

  8. Environmental Assessment and Finding of No Significant Impact: Kalina Geothermal Demonstration Project Steamboat Springs, Nevada

    Energy Technology Data Exchange (ETDEWEB)

    N/A

    1999-02-22

    The Department of Energy (DOE) has prepared an Environmental Assessment (EA) to provide the DOE and other public agency decision makers with the environmental documentation required to take informed discretionary action on the proposed Kalina Geothermal Demonstration project. The EA assesses the potential environmental impacts and cumulative impacts, possible ways to minimize effects associated with partial funding of the proposed project, and discusses alternatives to DOE actions. The DOE will use this EA as a basis for their decision to provide financial assistance to Exergy, Inc. (Exergy), the project applicant. Based on the analysis in the EA, DOE has determined that the proposed action is not a major Federal action significantly affecting the quality of the human or physical environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an environmental impact statement is not required and DOE is issuing this Finding of No Significant Impact (FONSI).

  9. Summary results of an assessment of research projects in the National Photovoltaics Program

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-07-01

    The Office of Energy Research (OER) undertook an assessment of 115 research projects (listed in Appendix A) sponsored by the National Photovoltaics Program. The Program is located within the Office of Energy Efficiency and Renewable Energy (EE). This report summarizes the results of that review. The Office of Solar Energy Conversion is responsible for the management of the National Photovoltaics Program. This program focuses on assisting US industry in development of fundamental technology to bring advanced photovoltaic energy systems to commercial use. The purpose of the assessment was to determine the following: (1) the quality of research of individual projects; (2) the impact of these individual projects on the mission of the program; and (3) the priority of future research opportunities.

  10. Estimating False Positive Contamination in Crater Annotations from Citizen Science Data

    Science.gov (United States)

    Tar, P. D.; Bugiolacchi, R.; Thacker, N. A.; Gilmour, J. D.

    2017-01-01

    Web-based citizen science often involves the classification of image features by large numbers of minimally trained volunteers, such as the identification of lunar impact craters under the Moon Zoo project. Whilst such approaches facilitate the analysis of large image data sets, the inexperience of users and ambiguity in image content can lead to contamination from false positive identifications. We give an approach, using Linear Poisson Models and image template matching, that can quantify levels of false positive contamination in citizen science Moon Zoo crater annotations. Linear Poisson Models are a form of machine learning which supports predictive error modelling and goodness-of-fits, unlike most alternative machine learning methods. The proposed supervised learning system can reduce the variability in crater counts whilst providing predictive error assessments of estimated quantities of remaining true verses false annotations. In an area of research influenced by human subjectivity, the proposed method provides a level of objectivity through the utilisation of image evidence, guided by candidate crater identifications.

  11. jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units.

    Directory of Open Access Journals (Sweden)

    Martin Jones

    Full Text Available BACKGROUND: DNA barcoding and other DNA sequence-based techniques for investigating and estimating biodiversity require explicit methods for associating individual sequences with taxa, as it is at the taxon level that biodiversity is assessed. For many projects, the bioinformatic analyses required pose problems for laboratories whose prime expertise is not in bioinformatics. User-friendly tools are required for both clustering sequences into molecular operational taxonomic units (MOTU and for associating these MOTU with known organismal taxonomies. RESULTS: Here we present jMOTU, a Java program for the analysis of DNA barcode datasets that uses an explicit, determinate algorithm to define MOTU. We demonstrate its usefulness for both individual specimen-based Sanger sequencing surveys and bulk-environment metagenetic surveys using long-read next-generation sequencing data. jMOTU is driven through a graphical user interface, and can analyse tens of thousands of sequences in a short time on a desktop computer. A companion program, Taxonerator, that adds traditional taxonomic annotation to MOTU, is also presented. Clustering and taxonomic annotation data are stored in a relational database, and are thus amenable to subsequent data mining and web presentation. CONCLUSIONS: jMOTU efficiently and robustly identifies the molecular taxa present in survey datasets, and Taxonerator decorates the MOTU with putative identifications. jMOTU and Taxonerator are freely available from http://www.nematodes.org/.

  12. Estimating False Positive Contamination in Crater Annotations from Citizen Science Data

    Science.gov (United States)

    Tar, P. D.; Bugiolacchi, R.; Thacker, N. A.; Gilmour, J. D.

    2016-11-01

    Web-based citizen science often involves the classification of image features by large numbers of minimally trained volunteers, such as the identification of lunar impact craters under the Moon Zoo project. Whilst such approaches facilitate the analysis of large image data sets, the inexperience of users and ambiguity in image content can lead to contamination from false positive identifications. We give an approach, using Linear Poisson Models and image template matching, that can quantify levels of false positive contamination in citizen science Moon Zoo crater annotations. Linear Poisson Models are a form of machine learning which supports predictive error modelling and goodness-of-fits, unlike most alternative machine learning methods. The proposed supervised learning system can reduce the variability in crater counts whilst providing predictive error assessments of estimated quantities of remaining true verses false annotations. In an area of research influenced by human subjectivity, the proposed method provides a level of objectivity through the utilisation of image evidence, guided by candidate crater identifications.

  13. National Assessment of Oil and Gas Project - Yukon Flats Assessment Area (002) Boundary

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The USGS Central Region Energy Team assesses oil and gas resources of the United States. The onshore and State water areas of the United States comprise 71...

  14. Knowledge Annotation maknig implicit knowledge explicit

    CERN Document Server

    Dingli, Alexiei

    2011-01-01

    Did you ever read something on a book, felt the need to comment, took up a pencil and scribbled something on the books' text'? If you did, you just annotated a book. But that process has now become something fundamental and revolutionary in these days of computing. Annotation is all about adding further information to text, pictures, movies and even to physical objects. In practice, anything which can be identified either virtually or physically can be annotated. In this book, we will delve into what makes annotations, and analyse their significance for the future evolutions of the web. We wil

  15. The financial attractiveness assessment of large waste management projects registered as clean development mechanism

    Energy Technology Data Exchange (ETDEWEB)

    Bufoni, André Luiz, E-mail: bufoni@facc.ufrj.br [Energy Planning Program, Universidade Federal do Rio de Janeiro PPE/COPPE/UFRJ (Brazil); Oliveira, Luciano Basto [International Virtual Institute of Global Changes IVIG/COPPE/UFRJ (Brazil); Rosa, Luiz Pinguelli [Energy Planning Program, Universidade Federal do Rio de Janeiro PPE/COPPE/UFRJ (Brazil)

    2015-09-15

    Highlights: • Projects are not financially attractive without registration as CDMs. • WM benchmarks and indicators are converging and reducing in variance. • A sensitivity analysis reveal that revenue has more of an effect on the financial results. • Results indicate that an extensive database would reduce WM project risk and capital costs. • Disclosure standards would make information more comparable worldwide. - Abstract: This study illustrates the financial analyses for demonstration and assessment of additionality presented in the project design (PDD) and enclosed documents of the 431 large Clean Development Mechanisms (CDM) classified as the ‘waste handling and disposal sector’ (13) over the past ten years (2004–2014). The expected certified emissions reductions (CER) of these projects total 63.54 million metric tons of CO{sub 2}eq, where eight countries account for 311 projects and 43.36 million metric tons. All of the projects declare themselves ‘not financially attractive’ without CER with an estimated sum of negative results of approximately a half billion US$. The results indicate that WM benchmarks and indicators are converging and reducing in variance, and the sensitivity analysis reveals that revenues have a greater effect on the financial results. This work concludes that an extensive financial database with simple standards for disclosure would greatly diminish statement problems and make information more comparable, reducing the risk and capital costs of WM projects.

  16. National Assessment of Oil and Gas Project Bend Arch-Ft. Worth Basin Province (045) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  17. National Assessment of Oil and Gas Project - Raton Basin-Sierra Grande Uplift Province (041) Total Petroleum Systems

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the...

  18. Floristic Quality Index: An assessment tool for restoration projects and monitoring sites in coastal Louisiana

    Science.gov (United States)

    Cretini, K.F.; Steyer, G.D.

    2011-01-01

    The Coastwide Reference Monitoring System (CRMS) program was established to assess the effectiveness of individual coastal restoration projects and the cumulative effects of multiple projects at regional and coastwide scales. In order to make these assessments, analytical teams have been assembled for each of the primary data types sampled under the CRMS program, including vegetation, hydrology, landscape, and soils. These teams consist of scientists and support staff from the U.S. Geological Survey and other Federal agencies, the Louisiana Office of Coastal Protection and Restoration, and university academics. Each team is responsible for developing or identifying parameters, indices, or tools that can be used to assess coastal wetlands at various scales. The CRMS Vegetation Analytical Team has developed a Floristic Quality Index for coastal Louisiana to determine the quality of a wetland based on its plant species composition and abundance.

  19. COSIMA - A New Decision Support System for the Assessment of Large Transport Infrastructure Projects

    DEFF Research Database (Denmark)

    Salling, Kim Bang; Jensen, Anders Vestergaard; Holvad, Torben;

    2005-01-01

    This paper presents a new proto-type decision support system named COSIMA-DSS for composite method for assessment - decision support system. This userfriendly system makes it possible for decision makers to assess large infrastructure projects and take special account of various uncertainties...... in a systematic and explicit way. The model applied is based on cost-benefit analysis (CBA) embedded in a wider multi-criteria analysis (MCA) and makes use of scenario analysis (SA) and Monte Carlo simulation (MCS). A particular concern of the model is the handling of varying information across the assessment...... the features of the COSIMA-DSS model as a useful decision support tool. It is finally concluded that appraisal of large infrastructure projects can be effectively supported by dealing with uncertainty issues in accordance with the described principles....

  20. Weight Care Project: Health professionals' attitudes and ability to assess body weight status - Study protocol

    LENUS (Irish Health Repository)

    Moorhead, Anne

    2011-03-31

    Abstract Background Health professionals working in primary care and public health have opportunities to address body weight status issues with their patients through face-to-face contact. The objectives of this all-Ireland project are: 1. to assess the attitudes, current practices\\/behaviours and knowledge of key health professional groups on body weight status; 2. to assess the health professional groups\\' ability to identify body weight status in both adults and children. The health professional groups are: (a) community related public health nurses; (b) school public health nurses; (c) GPs and practice nurses (primary care); and (d) occupational health nurses (workplace) from both Northern Ireland and the Republic of Ireland. Methods\\/Design This all-Ireland multi-disciplinary project follows a mixed methods approach using both quantitative and qualitative methodologies, and consists of four components: 1. Literature review - to explore the role of health professionals in managing obesity through spontaneous intervention in a variety of health promotion settings. 2. Telephone interviews and focus groups - to gain an in-depth insight into the views of health professionals in assessing body weight status. 3. Survey (primarily online but also paper-based) - to determine the attitudes, current practices\\/behaviours and knowledge of health professionals in assessing body weight status. 4. Online evaluation study - an online interactive programme will be developed to assess health professionals\\' ability to identify the body weight status of adults and children. Discussion This project will assess and report the attitudes, current practices\\/behaviours and knowledge of key health professional groups within Northern Ireland and the Republic of Ireland on body weight status, and their ability to identify body weight status in both adults and children. The results of this project will generate recommendations for clinical practice in managing obesity, which may

  1. Weight Care Project: Health professionals' attitudes and ability to assess body weight status - Study protocol

    Directory of Open Access Journals (Sweden)

    Murphy Kathy

    2011-03-01

    Full Text Available Abstract Background Health professionals working in primary care and public health have opportunities to address body weight status issues with their patients through face-to-face contact. The objectives of this all-Ireland project are: 1. to assess the attitudes, current practices/behaviours and knowledge of key health professional groups on body weight status; 2. to assess the health professional groups' ability to identify body weight status in both adults and children. The health professional groups are: (a community related public health nurses; (b school public health nurses; (c GPs and practice nurses (primary care; and (d occupational health nurses (workplace from both Northern Ireland and the Republic of Ireland. Methods/Design This all-Ireland multi-disciplinary project follows a mixed methods approach using both quantitative and qualitative methodologies, and consists of four components: 1. Literature review - to explore the role of health professionals in managing obesity through spontaneous intervention in a variety of health promotion settings. 2. Telephone interviews and focus groups - to gain an in-depth insight into the views of health professionals in assessing body weight status. 3. Survey (primarily online but also paper-based - to determine the attitudes, current practices/behaviours and knowledge of health professionals in assessing body weight status. 4. Online evaluation study - an online interactive programme will be developed to assess health professionals' ability to identify the body weight status of adults and children. Discussion This project will assess and report the attitudes, current practices/behaviours and knowledge of key health professional groups within Northern Ireland and the Republic of Ireland on body weight status, and their ability to identify body weight status in both adults and children. The results of this project will generate recommendations for clinical practice in managing obesity, which may

  2. Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics

    Institute of Scientific and Technical Information of China (English)

    Satoshi Tamaki; Kazuharu Arakawa; Nobuaki Kono; Masaru Tomita

    2007-01-01

    Annotations of complete genome sequences submitted directly from sequencing projects are diverse in terms of annotation strategies and update frequencies. These inconsistencies make comparative studies difficult. To allow rapid data preparation of a large number of complete genomes, automation and speed are important for genome re-annotation. Here we introduce an open-source rapid genome re-annotation software system, Restauro-G, specialized for bacterial genomes. Restauro-G re-annotates a genome by similarity searches utilizing the BLAST-Like Alignment Tool, referring to protein databases such as UniProt KB, NCBI nr, NCBI COGs, Pfam, and PSORTb. Re-annotation by Restauro-G achieved over 98% accuracy for most bacterial chromosomes in comparison with the original manually curated annotation of EMBL releases. Restauro-G was developed in the generic bioinformatics workbench G-language Genome Analysis Environment and is distributed at http://restauro-g.iab.keio.ac.jp/ under the GNU General Public License.

  3. Significance of model credibility in estimating climate projection distributions for regional hydroclimatological risk assessments

    Science.gov (United States)

    Brekke, L.D.; Dettinger, M.D.; Maurer, E.P.; Anderson, M.

    2008-01-01

    Ensembles of historical climate simulations and climate projections from the World Climate Research Programme's (WCRP's) Coupled Model Intercomparison Project phase 3 (CMIP3) multi-model dataset were investigated to determine how model credibility affects apparent relative scenario likelihoods in regional risk assessments. Methods were developed and applied in a Northern California case study. An ensemble of 59 twentieth century climate simulations from 17 WCRP CMIP3 models was analyzed to evaluate relative model credibility associated with a 75-member projection ensemble from the same 17 models. Credibility was assessed based on how models realistically reproduced selected statistics of historical climate relevant to California climatology. Metrics of this credibility were used to derive relative model weights leading to weight-threshold culling of models contributing to the projection ensemble. Density functions were then estimated for two projected quantities (temperature and precipitation), with and without considering credibility-based ensemble reductions. An analysis for Northern California showed that, while some models seem more capable at recreating limited aspects twentieth century climate, the overall tendency is for comparable model performance when several credibility measures are combined. Use of these metrics to decide which models to include in density function development led to local adjustments to function shapes, but led to limited affect on breadth and central tendency, which were found to be more influenced by 'completeness' of the original ensemble in terms of models and emissions pathways. ?? 2007 Springer Science+Business Media B.V.

  4. Water governance within Kenya's Upper Ewaso Ng'iro Basin: Assessing the performance of water projects

    Science.gov (United States)

    McCord, P. F.; Evans, T. P.; Dell'Angelo, J.; Gower, D.; McBride, L.; Caylor, K. K.

    2013-12-01

    Climate change processes are projected to change the availability and seasonality of streamflow with dramatic implications for irrigated agricultural systems. Within mountain environments, this alteration in water availability may be quite pronounced over a relatively short distance as upstream users with first access to river water directly impact the availability of water to downstream users. Livelihood systems that directly depend on river water for both domestic consumption and practices such as irrigated agriculture are particularly vulnerable. The Mount Kenya region is an exemplary case of a semi-arid upstream-downstream system in which water availability rapidly decreases and directly impacts the livelihoods of river water users existing across this steep environmental gradient. To effectively manage river water within these water-scarce environs, water projects have been established along the major rivers of the Mount Kenya region. These water projects are responsible for managing water within discrete sub-catchments of the region. While water projects develop rules that encourage the responsible use of water and maintenance of the project itself, the efficiency of water allocation to the projects' members remains unclear. This research analyzes water projects from five sub-catchments on the northwest slopes of Mount Kenya. It utilizes data from household surveys and water project management surveys as well as stream gauge data and flow measurements within individual water projects to assess the governance structure and performance of water projects. The performance of water projects is measured through a variety of household level metrics including: farm-level water flow and volume over time, mean and variability in maize yield, per capita crop productivity, household-level satisfaction with water availability, number of days where water volume was insufficient for irrigation, and quantity harvested compared with expected quantity harvested. We present

  5. Assessment of fires in chemical warehouses. An overview of the TOXFIRE project

    DEFF Research Database (Denmark)

    1999-01-01

    The report summarises the scientific outcome of the CEC Environment project "TOXFIRE. Guidelines for Management of Fires in Chemical Warehouses". The project was performed in the period 1994 - 1996 in a multi-national co-operation between partners fromUnited Kingdom, Sweden, Finland and Denmark...... performed. Also included were items as fire modelling, risk assessment to human health and the environment. Finally, the basis of guidelines for safetyengineers and fire brigades were established. The report describes the work done by each partner and the main results achieved. The references of all reports...

  6. Terra: a Collection of Translation Error-Annotated Corpora

    OpenAIRE

    Popović, Maja; Fishel, Mark; Bojar, Ondřej

    2012-01-01

    Recently the first methods of automatic diagnostics of machine translation have emerged; since this area of research is relatively young, the efforts are not coordinated. We present a collection of translation error-annotated corpora, consisting of automatically produced trans- lations and their detailed manual translation error analysis. Using the collected corpora we evaluate the available state-of-the-art methods of MT diagnostics and assess, how well the methods perform, how they...

  7. Sustainable Hydro Assessment and Groundwater Recharge Projects (SHARP) in Germany - Water Balance Models

    Science.gov (United States)

    Niemand, C.; Kuhn, K.; Schwarze, R.

    2010-12-01

    SHARP is a European INTERREG IVc Program. It focuses on the exchange of innovative technologies to protect groundwater resources for future generations by considering the climate change and the different geological and geographical conditions. Regions involved are Austria, United Kingdom, Poland, Italy, Macedonia, Malta, Greece and Germany. They will exchange practical know-how and also determine know-how demands concerning SHARP’s key contents: general groundwater management tools, artificial groundwater recharge technologies, groundwater monitoring systems, strategic use of groundwater resources for drinking water, irrigation and industry, techniques to save water quality and quantity, drinking water safety plans, risk management tools and water balance models. SHARP Outputs & results will influence the regional policy in the frame of sustainable groundwater management to save and improve the quality and quantity of groundwater reservoirs for future generations. The main focus of the Saxon State Office for Environment, Agriculture and Landscape in this project is the enhancement and purposive use of water balance models. Already since 1992 scientists compare different existing water balance models on different scales and coupled with groundwater models. For example in the KLIWEP (Assessment of Impacts of Climate Change Projections on Water and Matter Balance for the Catchment of River Parthe in Saxony) project the coupled model WaSiM-ETH - PCGEOFIM® has been used to study the impact of climate change on water balance and water supplies. The project KliWES (Assessment of the Impacts of Climate Change Projections on Water and Matter Balance for Catchment Areas in Saxony) still running, comprises studies of fundamental effects of climate change on catchments in Saxony. Project objective is to assess Saxon catchments according to the vulnerability of their water resources towards climate change projections in order to derive region-specific recommendations for

  8. CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.

    Science.gov (United States)

    Park, Julie; Costanzo, Maria C; Balakrishnan, Rama; Cherry, J Michael; Hong, Eurie L

    2012-01-01

    The set of annotations at the Saccharomyces Genome Database (SGD) that classifies the cellular function of S. cerevisiae gene products using Gene Ontology (GO) terms has become an important resource for facilitating experimental analysis. In addition to capturing and summarizing experimental results, the structured nature of GO annotations allows for functional comparison across organisms as well as propagation of functional predictions between related gene products. Due to their relevance to many areas of research, ensuring the accuracy and quality of these annotations is a priority at SGD. GO annotations are assigned either manually, by biocurators extracting experimental evidence from the scientific literature, or through automated methods that leverage computational algorithms to predict functional information. Here, we discuss the relationship between literature-based and computationally predicted GO annotations in SGD and extend a strategy whereby comparison of these two types of annotation identifies genes whose annotations need review. Our method, CvManGO (Computational versus Manual GO annotations), pairs literature-based GO annotations with computational GO predictions and evaluates the relationship of the two terms within GO, looking for instances of discrepancy. We found that this method will identify genes that require annotation updates, taking an important step towards finding ways to prioritize literature review. Additionally, we explored factors that may influence the effectiveness of CvManGO in identifying relevant gene targets to find in particular those genes that are missing literature-supported annotations, but our survey found that there are no immediately identifiable criteria by which one could enrich for these under-annotated genes. Finally, we discuss possible ways to improve this strategy, and the applicability of this method to other projects that use the GO for curation. DATABASE URL: http://www.yeastgenome.org.

  9. The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Science.gov (United States)

    Huntemann, Marcel; Ivanova, Natalia N; Mavromatis, Konstantinos; Tripp, H James; Paez-Espino, David; Tennessen, Kristin; Palaniappan, Krishnaveni; Szeto, Ernest; Pillay, Manoj; Chen, I-Min A; Pati, Amrita; Nielsen, Torben; Markowitz, Victor M; Kyrpides, Nikos C

    2016-01-01

    The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the associated sequence datasets consisting of scaffolds/contigs with optional coverage information and/or unassembled reads in fasta and fastq file formats. The MAP processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR elements. Structural annotation is followed by functional annotation including assignment of protein product names and connection to various protein family databases.

  10. Annotation an effective device for student feedback: a critical review of the literature.

    Science.gov (United States)

    Ball, Elaine C

    2010-05-01

    The paper examines hand-written annotation, its many features, difficulties and strengths as a feedback tool. It extends and clarifies what modest evidence is in the public domain and offers an evaluation of how to use annotation effectively in the support of student feedback [Marshall, C.M., 1998a. The Future of Annotation in a Digital (paper) World. Presented at the 35th Annual GLSLIS Clinic: Successes and Failures of Digital Libraries, June 20-24, University of Illinois at Urbana-Champaign, March 24, pp. 1-20; Marshall, C.M., 1998b. Toward an ecology of hypertext annotation. Hypertext. In: Proceedings of the Ninth ACM Conference on Hypertext and Hypermedia, June 20-24, Pittsburgh Pennsylvania, US, pp. 40-49; Wolfe, J.L., Nuewirth, C.M., 2001. From the margins to the centre: the future of annotation. Journal of Business and Technical Communication, 15(3), 333-371; Diyanni, R., 2002. One Hundred Great Essays. Addison-Wesley, New York; Wolfe, J.L., 2002. Marginal pedagogy: how annotated texts affect writing-from-source texts. Written Communication, 19(2), 297-333; Liu, K., 2006. Annotation as an index to critical writing. Urban Education, 41, 192-207; Feito, A., Donahue, P., 2008. Minding the gap annotation as preparation for discussion. Arts and Humanities in Higher Education, 7(3), 295-307; Ball, E., 2009. A participatory action research study on handwritten annotation feedback and its impact on staff and students. Systemic Practice and Action Research, 22(2), 111-124; Ball, E., Franks, H., McGrath, M., Leigh, J., 2009. Annotation is a valuable tool to enhance learning and assessment in student essays. Nurse Education Today, 29(3), 284-291]. Although a significant number of studies examine annotation, this is largely related to on-line tools and computer mediated communication and not hand-written annotation as comment, phrase or sign written on the student essay to provide critique. Little systematic research has been conducted to consider how this latter form

  11. Towards an event annotated corpus of Polish

    Directory of Open Access Journals (Sweden)

    Michał Marcińczuk

    2015-12-01

    Full Text Available Towards an event annotated corpus of Polish The paper presents a typology of events built on the basis of TimeML specification adapted to Polish language. Some changes were introduced to the definition of the event categories and a motivation for event categorization was formulated. The event annotation task is presented on two levels – ontology level (language independent and text mentions (language dependant. The various types of event mentions in Polish text are discussed. A procedure for annotation of event mentions in Polish texts is presented and evaluated. In the evaluation a randomly selected set of documents from the Corpus of Wrocław University of Technology (called KPWr was annotated by two linguists and the annotator agreement was calculated. The evaluation was done in two iterations. After the first evaluation we revised and improved the annotation procedure. The second evaluation showed a significant improvement of the agreement between annotators. The current work was focused on annotation and categorisation of event mentions in text. The future work will be focused on description of event with a set of attributes, arguments and relations.

  12. Ground Truth Annotation in T Analyst

    DEFF Research Database (Denmark)

    2015-01-01

    This video shows how to annotate the ground truth tracks in the thermal videos. The ground truth tracks are produced to be able to compare them to tracks obtained from a Computer Vision tracking approach. The program used for annotation is T-Analyst, which is developed by Aliaksei Laureshyn, Ph...

  13. Creating Gaze Annotations in Head Mounted Displays

    DEFF Research Database (Denmark)

    Mardanbeigi, Diako; Qvarfordt, Pernilla

    2015-01-01

    To facilitate distributed communication in mobile settings, we developed GazeNote for creating and sharing gaze annotations in head mounted displays (HMDs). With gaze annotations it possible to point out objects of interest within an image and add a verbal description. To create an annota- tion, ...

  14. Annotation of regular polysemy and underspecification

    DEFF Research Database (Denmark)

    Martínez Alonso, Héctor; Pedersen, Bolette Sandford; Bel, Núria

    2013-01-01

    We present the result of an annotation task on regular polysemy for a series of seman- tic classes or dot types in English, Dan- ish and Spanish. This article describes the annotation process, the results in terms of inter-encoder agreement, and the sense distributions obtained with two methods...

  15. The surplus value of semantic annotations

    NARCIS (Netherlands)

    M. Marx

    2010-01-01

    We compare the costs of semantic annotation of textual documents to its benefits for information processing tasks. Semantic annotation can improve the performance of retrieval tasks and facilitates an improved search experience through faceted search, focused retrieval, better document summaries, an

  16. Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop.

    Science.gov (United States)

    Brister, James Rodney; Bao, Yiming; Kuiken, Carla; Lefkowitz, Elliot J; Le Mercier, Philippe; Leplae, Raphael; Madupu, Ramana; Scheuermann, Richard H; Schobel, Seth; Seto, Donald; Shrivastava, Susmita; Sterk, Peter; Zeng, Qiandong; Klimke, William; Tatusova, Tatiana

    2010-10-01

    Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology. Yet, as viral genome sequences begin to fill the world's biological databases, it is critically important to recognize that the scientific promise of this era is dependent on consistent and comprehensive genome annotation. With this in mind, the NCBI Genome Annotation Workshop recently hosted a study group tasked with developing sequence, function, and metadata annotation standards for viral genomes. This report describes the issues involved in viral genome annotation and reviews policy recommendations presented at the NCBI Annotation Workshop.

  17. Hot Dry Rock Project modification and expansion, Fenton Hill, Sandoval County, New Mexico: Environmental assessment

    Energy Technology Data Exchange (ETDEWEB)

    1979-09-01

    This environmental assessment (EA) addresses the modification and expansion of the ongoing Hot Dry Rock Project at Fenton Hill, New Mexico. Modifications to the Project include the upgrading and improvement of the hot dry rock (HDR) heat transfer system and the onsite support facilities. At least one new heat extraction well will be drilled to accommodate a large thermal loop experiment. The existing wells will be redrilled to greater depth. Expansion of the Project includes the construction and operation of heat utilization facilities (that is, 60 kW electric generator and greenhouse), wellbore equipment test station, large-capacity water supply and storage system, water treatment facility, and additional seismic monitoring stations. This EA addresses the potential environmental impacts of the total facility as expanded to accommodate the large thermal loop and heat utilization experiments.

  18. Environmental Assessment for the Warren Station externally fired combined cycle demonstration project

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-04-01

    The proposed Penelec project is one of 5 projects for potential funding under the fifth solicitation under the Clean Coal Technology program. In Penelec, two existing boilers would be replaced at Warren Station, PA; the new unit would produce 73 MW(e) in a combined cycle mode (using both gas-fired and steam turbines). The project would fill the need for a full utility-size demonstration of externally fire combined cycle (EFCC) technology as the next step toward commercialization. This environmental assessment was prepared for compliance with NEPA; its purpose is to provide sufficient basis for determining whether to prepare an environmental impact statement or to issue a finding of no significant impact. It is divided into the sections: purpose and need for proposed action; alternatives; brief description of affected environment; environmental consequences, including discussion of commercial operation beyond the demonstration period.

  19. Conforth Ranch (Wanaket) Wildlife Mitigation Project : Draft Management Plan and Draft Environmental Assessment.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration; Confederated Tribes of the Umatilla Reservation, Oregon.

    1995-03-01

    Bonneville Power Administration (BPA) proposes to mitigate for loss of wildlife habitat caused by the development of Columbia River Basin hydroelectric projects, including McNary dam. The proposed wildlife mitigation project involves wildlife conservation on 1140 hectares (ha)(2817 acres) of land (including water rights) in Umatilla County, Oregon. BPA has prepared an Environmental Assessment (EA)(DOE/EA- 1016) evaluating the proposed project. Based on the analysis in the EA, BPA has determined that the proposed action is not a major Federal action significantly affecting the quality of the human environment within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an Environmental Impact Statement (EIS) is not required, and BPA is issuing this Finding of No Significant Impact (FONSI).

  20. Addressing Climate Change Mitigation and Adaptation Together: A Global Assessment of Agriculture and Forestry Projects

    DEFF Research Database (Denmark)

    Kongsager, Rico; Locatelli, Bruno; Chazarin, Florie

    2016-01-01

    Adaptation and mitigation share the ultimate purpose of reducing climate change impacts. However, they tend to be considered separately in projects and policies because of their different objectives and scales. Agriculture and forestry are related to both adaptation and mitigation: they contribute...... to greenhouse gas emissions and removals, are vulnerable to climate variations, and form part of adaptive strategies for rural livelihoods. We assessed how climate change project design documents (PDDs) considered a joint contribution to adaptation and mitigation in forestry and agriculture in the tropics......, by analyzing 201 PDDs from adaptation funds, mitigation instruments, and project standards [e.g., climate community and biodiversity (CCB)]. We analyzed whether PDDs established for one goal reported an explicit contribution to the other (i.e., whether mitigation PDDs contributed to adaptation and vice versa...

  1. Concept annotation in the CRAFT corpus

    Directory of Open Access Journals (Sweden)

    Bada Michael

    2012-07-01

    Full Text Available Abstract Background Manually annotated corpora are critical for the training and evaluation of automated methods to identify concepts in biomedical text. Results This paper presents the concept annotations of the Colorado Richly Annotated Full-Text (CRAFT Corpus, a collection of 97 full-length, open-access biomedical journal articles that have been annotated both semantically and syntactically to serve as a research resource for the biomedical natural-language-processing (NLP community. CRAFT identifies all mentions of nearly all concepts from nine prominent biomedical ontologies and terminologies: the Cell Type Ontology, the Chemical Entities of Biological Interest ontology, the NCBI Taxonomy, the Protein Ontology, the Sequence Ontology, the entries of the Entrez Gene database, and the three subontologies of the Gene Ontology. The first public release includes the annotations for 67 of the 97 articles, reserving two sets of 15 articles for future text-mining competitions (after which these too will be released. Concept annotations were created based on a single set of guidelines, which has enabled us to achieve consistently high interannotator agreement. Conclusions As the initial 67-article release contains more than 560,000 tokens (and the full set more than 790,000 tokens, our corpus is among the largest gold-standard annotated biomedical corpora. Unlike most others, the journal articles that comprise the corpus are drawn from diverse biomedical disciplines and are marked up in their entirety. Additionally, with a concept-annotation count of nearly 100,000 in the 67-article subset (and more than 140,000 in the full collection, the scale of conceptual markup is also among the largest of comparable corpora. The concept annotations of the CRAFT Corpus have the potential to significantly advance biomedical text mining by providing a high-quality gold standard for NLP systems. The corpus, annotation guidelines, and other associated resources are

  2. Facilitating functional annotation of chicken microarray data

    Directory of Open Access Journals (Sweden)

    Gresham Cathy R

    2009-10-01

    Full Text Available Abstract Background Modeling results from chicken microarray studies is challenging for researchers due to little functional annotation associated with these arrays. The Affymetrix GenChip chicken genome array, one of the biggest arrays that serve as a key research tool for the study of chicken functional genomics, is among the few arrays that link gene products to Gene Ontology (GO. However the GO annotation data presented by Affymetrix is incomplete, for example, they do not show references linked to manually annotated functions. In addition, there is no tool that facilitates microarray researchers to directly retrieve functional annotations for their datasets from the annotated arrays. This costs researchers amount of time in searching multiple GO databases for functional information. Results We have improved the breadth of functional annotations of the gene products associated with probesets on the Affymetrix chicken genome array by 45% and the quality of annotation by 14%. We have also identified the most significant diseases and disorders, different types of genes, and known drug targets represented on Affymetrix chicken genome array. To facilitate functional annotation of other arrays and microarray experimental datasets we developed an Array GO Mapper (AGOM tool to help researchers to quickly retrieve corresponding functional information for their dataset. Conclusion Results from this study will directly facilitate annotation of other chicken arrays and microarray experimental datasets. Researchers will be able to quickly model their microarray dataset into more reliable biological functional information by using AGOM tool. The disease, disorders, gene types and drug targets revealed in the study will allow researchers to learn more about how genes function in complex biological systems and may lead to new drug discovery and development of therapies. The GO annotation data generated will be available for public use via AgBase website and

  3. Groundwater quality data from the National Water-Quality Assessment Project, May 2012 through December 2013

    Science.gov (United States)

    Arnold, Terri L.; DeSimone, Leslie A.; Bexfield, Laura M.; Lindsey, Bruce D.; Barlow, Jeannie R.; Kulongoski, Justin T.; Musgrove, Marylynn; Kingsbury, James A.; Belitz, Kenneth

    2016-06-20

    Groundwater-quality data were collected from 748 wells as part of the National Water-Quality Assessment Project of the U.S. Geological Survey National Water-Quality Program from May 2012 through December 2013. The data were collected from four types of well networks: principal aquifer study networks, which assess the quality of groundwater used for public water supply; land-use study networks, which assess land-use effects on shallow groundwater quality; major aquifer study networks, which assess the quality of groundwater used for domestic supply; and enhanced trends networks, which evaluate the time scales during which groundwater quality changes. Groundwater samples were analyzed for a large number of water-quality indicators and constituents, including major ions, nutrients, trace elements, volatile organic compounds, pesticides, and radionuclides. These groundwater quality data are tabulated in this report. Quality-control samples also were collected; data from blank and replicate quality-control samples are included in this report.

  4. Feasibility Risk Assessment of Transport Infrastructure Projects: The CBA-DK Decision Support Model

    DEFF Research Database (Denmark)

    Salling, Kim Bang; Banister, David

    2010-01-01

    This paper presents the final version of the CBA-DK decision support model for assessment of transport projects. The model makes use of conventional cost-benefit analysis resulting in aggregated single point estimates and quantitative risk analysis using Monte Carlo simulation resulting in interval...... results. Two special concerns in this paper is firstly the treatment of feasibility risk assessment adopted for evaluation of transport infrastructure projects, and secondly whether this can provide a more robust decision support model. This means moving away from a single point estimate to an interval...... result, and the determination of suitable probability distributions. Use is made of the reference class forecasting information, such as that developed in Optimism Bias for adjustments to investment decisions that relate to all modes of transport. The CBA-DK decision support model results in more...

  5. DEVELOPMENT POLICY AND INVESTMENT PROJECTS ASSESSMENT IN THE SECTOR OF SME IN SERBIA

    Directory of Open Access Journals (Sweden)

    JUGOSLAV ANIČIĆ

    2016-02-01

    Full Text Available The problems of rational investing, in other words efficient planning and realization of investment projects, are among key problems in development of every enterprise. For successful realization of business plans, enterprise should make use of its internal strengths and available resources from surroundings, and turn them into its competitive advantage. Small and medium enterprises in Serbia are facing low liquidity and a lack of their own funds for investing into long-term and development projects. Therefore, investment projects are conducted with a high participation of loaned funds, mainly credits, with high interest rates and short terms for paying back. The sector of small enterprises makes numerous mistakes when creating financial plans. Enterprises don’t understand basic parameters of revenues, especially which leverage points manage revenues, and revenues, themselves, are set on a too optimistic level. The time necessary to create revenues is also underestimated. In projections, many significant cost items are underestimated, and some costs are overlooked, which, inevitably, leads to liquidity problems. Needed cash funds are not acquired quickly, so the consequence is a negative cash flow, with all negative consequences in the later life of an enterprise. Such situation dictates necessity of additional caution when assessing investment projects' profitability because investment failures cause large negative consequences, both for an enterprise and a wider area or branch in which it functions. For the assessment of its investment projects small enterprises must use dynamic methods which take time value of money into consideration and which contribute to a better control of cash flows and liquidity of an enterprise.

  6. Environmental assessment of the Environmental Restoration Project at Sandia National Laboratories/New Mexico

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-03-01

    Sandia National Laboratories/New Mexico (SNL/NM) is managed and operated for the U.S. Department of Energy (DOE) by Sandia Corporation, a subsidiary of the Lockheed Martin Company. SNL/NM is located on land controlled by DOE within the boundaries of Kirtland Air Force Base (KAFB) in Albuquerque, New Mexico. The major responsibilities of SNL/NM are the support of national security and energy projects. This report provides an environmental assessment of proposed remedial action activities at the solid waste management units at SNL/NM. A risk assessment of health hazards is also discussed.

  7. Rubric-based tools to support the monitoring and assessment of Bachelor’s Final Projects

    Directory of Open Access Journals (Sweden)

    Verónica MORENO OLIVER

    2015-12-01

    Full Text Available The role of Bachelor’s Final Projects (BFP in Engineering Education is critical since it offers the opportunity for students to integrate and employ specific and transversal competences they have developed along the degree. However, given the special characteristics of this curriculum component (personalized according to the student’s interests, the number of teachers involved, the changing assessment boards, etc., the systematization of its formative and summative assessment has been extensively recognized as problematic but highly necessary. To face this problem, there are several recent initiatives reported in the literature that propose a set of rubrics as tools for project advisors and board members to structure the assessment. In this paper, we report the experience in the Engineering School at Universitat Pompeu Fabra (Barcelona employing a rubricbased approach as part of an assessment guide (with a web-based support tool for BFP. The guide has been evaluated using quantitative and qualitative data gathering techniques used before, during and after the rubrics use, and the results provide insights about its utility, pertinence, user-friendliness, preciseness and actual adoption. Findings led to the provision an additional feature in the web-based tool for the integrated assessment of transversal and specific competences and a view of a summarized version of the rubrics that can be used using mobile devices.

  8. Synthesis about a collaborative project on “Technology Assessment of Autonomous Systems”

    OpenAIRE

    António B. Moniz

    2009-01-01

    The project started in 2009 with the support of DAAD in Germany and CRUP in Portugal under the “Collaborative German-Portuguese University Actions” programme. One central goal is the further development of a theory of technology assessment applied to robotics and autonomous systems in general that reflects in its methodology the changing conditions of knowledge production in modern societies and the emergence of new robotic technologies and of associated disruptive changes. Relevant topics he...

  9. Environmental Assessment for Multiple Projects at Laughlin Air Forc Base, TX

    Science.gov (United States)

    2013-02-06

    accomplishment. 20 Outside the range’s designated safety berms is evidence of ricochet debris, the result of having used full-21 metal- jacket ...Fault Zone, but no recent seismic activity has occurred in the area 16 FINAL - Environmental Assessment for Multiple Projects Laughlin Air Force Base...resources, such as top soils, mineral 32 reserves, seismic activity, or unique or important land forms. The potential for large, uncontrolled 33

  10. Environmental Assessment for Mill Creek Restoration Project, Eglin Air Force Base, FL

    Science.gov (United States)

    2007-02-28

    Persons Contacted Mr. Chris Metcalf , U.S. Fish and Wildlife Service Mr Bob Miller, 96 CEG/CEVSN, Endangered Species Biologist Mr Mike Nunley, 96 CEG...currents into the center of the channel, and preventing back eddy erosion. In addition, these structures provide excellent fish habitat, maintain...bank protection and limit any back eddy erosion. 05/06 Biological Assessment Page A-13 for Mill Creek Restoration Project Eglin Air Force Base

  11. Annotation and Curation of Uncharacterized proteins- Challenges

    Directory of Open Access Journals (Sweden)

    Johny eIjaq

    2015-03-01

    Full Text Available Hypothetical Proteins are the proteins that are predicted to be expressed from an open reading frame (ORF, constituting a substantial fraction of proteomes in both prokaryotes and eukaryotes. Genome projects have led to the identification of many therapeutic targets, the putative function of the protein and their interactions. In this review we have enlisted various methods. Annotation linked to structural and functional prediction of hypothetical proteins assist in the discovery of new structures and functions serving as markers and pharmacological targets for drug designing, discovery and screening. Mass spectrometry is an analytical technique for validating protein characterisation. Matrix-assisted laser desorption ionization–mass spectrometry (MALDI-MS is an efficient analytical method. Microarrays and Protein expression profiles help understanding the biological systems through a systems-wide study of proteins and their interactions with other proteins and non-proteinaceous molecules to control complex processes in cells and tissues and even whole organism. Next generation sequencing technology accelerates multiple areas of genomics research.

  12. The Chicago Center for Green Technology: life-cycle assessment of a brownfield redevelopment project

    Science.gov (United States)

    Brecheisen, Thomas; Theis, Thomas

    2013-03-01

    The sustainable development of brownfields reflects a fundamental, yet logical, shift in thinking and policymaking regarding pollution prevention. Life-cycle assessment (LCA) is a tool that can be used to assist in determining the conformity of brownfield development projects to the sustainability paradigm. LCA was applied to the process of a real brownfield redevelopment project, now known as the Chicago Center for Green Technology, to determine the cumulative energy required to complete the following redevelopment stages: (1) brownfield assessment and remediation, (2) building rehabilitation and site development and (3) ten years of operation. The results of the LCA have shown that operational energy is the dominant life-cycle stage after ten years of operation. The preservation and rehabilitation of the existing building, the installation of renewable energy systems (geothermal and photovoltaic) on-site and the use of more sustainable building products resulted in 72 terajoules (TJ) of avoided energy impacts, which would provide 14 years of operational energy for the site. Methodological note: data for this life-cycle assessment were obtained from project reports, construction blueprints and utility bills.

  13. Functional annotation of a full-length mouse cDNA collection

    Energy Technology Data Exchange (ETDEWEB)

    Kawai, J.; Shinagawa, A.; Shibata, K.; Yoshino, M.; Itoh, M.; Ishii, Y.; Arakawa, T.; Hara, A.; Fukunishi, Y.; Konno, H.; Adachi, J.; Fukuda, S.; Aizawa, K.; Izawa, M.; Nishi, K.; Kiyosawa, H.; Kondo, S.; Yamanaka, I.; Saito, T.; Okazaki, Y.; Gojobori, T.; Bono, H.; Kasukawa, T.; Saito, R.; Kadota, K.; Matsuda, H.; Ashburner, M.; Batalov, S.; Casavant, T.; Fleischmann, W.; Gaasterland, T.; Gissi, C.; King, B.; Kochiwa, H.; Kuehl, P.; Lewis, S.; Matsuo, Y.; Nikaido, I.; Pesole, G.; Quackenbush, J.; Schriml, L.M.; Staubli, F.; Suzuki, R.; Tomita, M.; Wagner, L.; Washio, T.; Sakai, K.; Okido, T.; Furuno, M.; Aono, H.; Baldarelli, R.; Barsh, G.; Blake, J.; Boffelli, D.; Bojunga, N.; Carninci, P.; de Bonaldo, M.F.; Brownstein, M.J.; Bult, C.; Fletcher, C.; Fujita, M.; Gariboldi, M.; Gustincich, S.; Hill, D.; Hofmann, M.; Hume, D.A.; Kamiya, M.; Lee, N.H.; Lyons, P.; Marchionni, L.; Mashima, J.; Mazzarelli, J.; Mombaerts, P.; Nordone, P.; Ring, B.; Ringwald, M.; Rodriguez, I.; Sakamoto, N.; Sasaki, H.; Sato, K.; Schonbach, C.; Seya, T.; Shibata, Y.; Storch, K.-F.; Suzuki, H.; Toyo-oka, K.; Wang, K.H.; Weitz, C.; Whittaker, C.; Wilming, L.; Wynshaw-Boris, A.; Yoshida, K.; Hasegawa, Y.; Kawaji, H.; Kohtsuki, S.; Hayashizaki, Y.; RIKEN Genome Exploration Research Group Phase II T; FANTOM Consortium

    2001-01-01

    The RIKEN Mouse Gene Encyclopedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analyzed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.

  14. A Common XML-based Framework for Syntactic Annotations

    CERN Document Server

    Ide, Nancy; Erjavec, Tomaz

    2009-01-01

    It is widely recognized that the proliferation of annotation schemes runs counter to the need to re-use language resources, and that standards for linguistic annotation are becoming increasingly mandatory. To answer this need, we have developed a framework comprised of an abstract model for a variety of different annotation types (e.g., morpho-syntactic tagging, syntactic annotation, co-reference annotation, etc.), which can be instantiated in different ways depending on the annotator's approach and goals. In this paper we provide an overview of the framework, demonstrate its applicability to syntactic annotation, and show how it can contribute to comparative evaluation of parser output and diverse syntactic annotation schemes.

  15. Assessment Of Carbon Leakage In Multiple Carbon-Sink Projects: ACase Study In Jambi Province, Indonesia

    Energy Technology Data Exchange (ETDEWEB)

    Boer, Rizaldi; Wasrin, Upik R.; Hendri, Perdinan; Dasanto,Bambang D.; Makundi, Willy; Hero, Julius; Ridwan, M.; Masripatin, Nur

    2007-06-01

    Rehabilitation of degraded forest land throughimplementation of carbon sink projects can increase terrestrial carbonstock. However, carbon emissions outside the project boundary, which iscommonly referred to as leakage, may reduce or negate the sequestrationbenefits. This study assessed leakage from carbon sink projects thatcould potentially be implemented in the study area comprised of elevensub-districts in the Batanghari District, Jambi Province, Sumatra,Indonesia. The study estimates the probability of a given land use/coverbeing converted into other uses/cover, by applying a logit model. Thepredictor variables were: proximity to the center of the land use area,distance to transportation channel (road or river), area of agriculturalland, unemployment (number of job seekers), job opportunities, populationdensity and income. Leakage was estimated by analyzing with and withoutcarbon sink projects scenarios. Most of the predictors were estimated asbeing significant in their contribution to land use cover change. Theresults of the analysis show that leakage in the study area can be largeenough to more than offset the project's carbon sequestration benefitsduring the period 2002-2012. However, leakage results are very sensitiveto changes of carbon density of the land uses in the study area. Byreducing C-density of lowland and hill forest by about 10 percent for thebaseline scenario, the leakage becomes positive. Further data collectionand refinement is therefore required. Nevertheless, this study hasdemonstrated that regional analysis is a useful approach to assessleakage.

  16. Washington Wildlife Mitigation Projects : Final Programmatic Environmental Assessment and Finding of No Significant Impact.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration; Washington (State). Dept. of Fish and Wildlife.

    1996-08-01

    Bonneville Power Administration (BPA) proposes to fund the portion of the Washington Wildlife Mitigation Agreement (Agreement) pertaining to wildlife habitat mitigation projects to be undertaken in a cooperative effort with the Washington Department of Fish and Wildlife (WDFW). This Agreement serves to establish a monetary budget funded by BPA for projects proposed by Washington Wildlife Coalition members and approved by BPA to protect, mitigate, and improve wildlife and/or wildlife habitat within the State of Washington that has been affected by the construction of Federal dams along the Columbia River. This Environmental Assessment examines the potential environmental effects of acquiring and/or improving wildlife habitat within five different project areas. These project areas are located throughout Grant County and in parts of Okanogan, Douglas, Adams, Franklin, Kittias, Yakima, and Benton Counties. The multiple projects would involve varying combinations of five proposed site-specific activities (habitat improvement, operation and maintenance, monitoring and evaluation, access and recreation management, and cultural resource management). All required Federal, State, and tribal coordination, permits and/or approvals would be obtained prior to ground-disturbing activities.

  17. An ERP assessment of hemispheric projections in foveal and extrafoveal word recognition.

    Directory of Open Access Journals (Sweden)

    Timothy R Jordan

    Full Text Available BACKGROUND: The existence and function of unilateral hemispheric projections within foveal vision may substantially affect foveal word recognition. The purpose of this research was to reveal these projections and determine their functionality. METHODOLOGY: Single words (and pseudowords were presented to the left or right of fixation, entirely within either foveal or extrafoveal vision. To maximize the likelihood of unilateral projections for foveal displays, stimuli in foveal vision were presented away from the midline. The processing of stimuli in each location was assessed by combining behavioural measures (reaction times, accuracy with on-line monitoring of hemispheric activity using event-related potentials recorded over each hemisphere, and carefully-controlled presentation procedures using an eye-tracker linked to a fixation-contingent display. PRINCIPAL FINDINGS: Event-related potentials 100-150 ms and 150-200 ms after stimulus onset indicated that stimuli in extrafoveal and foveal locations were projected unilaterally to the hemisphere contralateral to the presentation hemifield with no concurrent projection to the ipsilateral hemisphere. These effects were similar for words and pseudowords, suggesting this early division occurred before word recognition. Indeed, event-related potentials revealed differences between words and pseudowords 300-350 ms after stimulus onset, for foveal and extrafoveal locations, indicating that word recognition had now occurred. However, these later event-related potentials also revealed that the hemispheric division observed previously was no longer present for foveal locations but remained for extrafoveal locations. These findings closely matched the behavioural finding that foveal locations produced similar performance each side of fixation but extrafoveal locations produced left-right asymmetries. CONCLUSIONS: These findings indicate that an initial division in unilateral hemispheric projections occurs in

  18. The Accuracy and Reliability of Crowdsource Annotations of Digital Retinal Images

    Science.gov (United States)

    Mitry, Danny; Zutis, Kris; Dhillon, Baljean; Peto, Tunde; Hayat, Shabina; Khaw, Kay-Tee; Morgan, James E.; Moncur, Wendy; Trucco, Emanuele; Foster, Paul J.

    2016-01-01

    Purpose Crowdsourcing is based on outsourcing computationally intensive tasks to numerous individuals in the online community who have no formal training. Our aim was to develop a novel online tool designed to facilitate large-scale annotation of digital retinal images, and to assess the accuracy of crowdsource grading using this tool, comparing it to expert classification. Methods We used 100 retinal fundus photograph images with predetermined disease criteria selected by two experts from a large cohort study. The Amazon Mechanical Turk Web platform was used to drive traffic to our site so anonymous workers could perform a classification and annotation task of the fundus photographs in our dataset after a short training exercise. Three groups were assessed: masters only, nonmasters only and nonmasters with compulsory training. We calculated the sensitivity, specificity, and area under the curve (AUC) of receiver operating characteristic (ROC) plots for all classifications compared to expert grading, and used the Dice coefficient and consensus threshold to assess annotation accuracy. Results In total, we received 5389 annotations for 84 images (excluding 16 training images) in 2 weeks. A specificity and sensitivity of 71% (95% confidence interval [CI], 69%–74%) and 87% (95% CI, 86%–88%) was achieved for all classifications. The AUC in this study for all classifications combined was 0.93 (95% CI, 0.91–0.96). For image annotation, a maximal Dice coefficient (∼0.6) was achieved with a consensus threshold of 0.25. Conclusions This study supports the hypothesis that annotation of abnormalities in retinal images by ophthalmologically naive individuals is comparable to expert annotation. The highest AUC and agreement with expert annotation was achieved in the nonmasters with compulsory training group. Translational Relevance The use of crowdsourcing as a technique for retinal image analysis may be comparable to expert graders and has the potential to deliver

  19. A topic modeling approach for web service annotation

    Directory of Open Access Journals (Sweden)

    Leandro Ordóñez-Ante

    2014-06-01

    Full Text Available The actual implementation of semantic-based mechanisms for service retrieval has been restricted, given the resource-intensive procedure involved in the formal specification of services, which generally comprises associating semantic annotations to their documentation sources. Typically, developer performs such a procedure by hand, requiring specialized knowledge on models for semantic description of services (e.g. OWL-S, WSMO, SAWSDL, as well as formal specifications of knowledge. Thus, this semantic-based service description procedure turns out to be a cumbersome and error-prone task. This paper introduces a proposal for service annotation, based on processing web service documentation for extracting information regarding its offered capabilities. By uncovering the hidden semantic structure of such information through statistical analysis techniques, we are able to associate meaningful annotations to the services operations/resources, while grouping those operations into non-exclusive semantic related categories. This research paper belongs to the TelComp 2.0 project, which Colciencas and University of Cauca founded in cooperation.

  20. Exploring Flexible and Multidisciplinary Approaches to Applied Science Research Project Assessments: Case Studies from the NASA DEVELOP National Program

    Science.gov (United States)

    Crepps, G.; Childs-Gleason, L. M.; Favors, J. E.; Ross, K. W.; Rogers, L.; Allsbrook, K. N.; Ruiz, M. L.

    2015-12-01

    Within the NASA DEVELOP National Program, teams conduct rapid prototype and feasibility projects, applying NASA Earth Observations to a broad range of problems in diverse focus areas, including water resources, agriculture, disaster management, and ecological forecasting, with the goal of assisting partner organizations in their decision making processes. Projects vary in scope, design, and satellite data utilized. As a result, there is no "fixed" set of indicators that encompasses all relevant impacts of all projects. Rather, a flexible toolkit of both shared indicators and individualized approaches is needed to capture the diverse outcomes of these projects, while still allowing for comparability of the projects. This has been done through the creation of pre- and post-project partner assessments that capture partner needs, capabilities, and expectations. This provides both baseline data and an overview of project impacts on partners. Selected projects are then individually assessed in greater detail through partner follow-ups and research into the quantification of project impacts utilizing interdisciplinary approaches to fit each project. This process is discussed through three examples of project impact assessments that draw from varied discipline approaches including cost benefit analysis and ecosystem services.

  1. Making web annotations persistent over time

    Energy Technology Data Exchange (ETDEWEB)

    Sanderson, Robert [Los Alamos National Laboratory; Van De Sompel, Herbert [Los Alamos National Laboratory

    2010-01-01

    As Digital Libraries (DL) become more aligned with the web architecture, their functional components need to be fundamentally rethought in terms of URIs and HTTP. Annotation, a core scholarly activity enabled by many DL solutions, exhibits a clearly unacceptable characteristic when existing models are applied to the web: due to the representations of web resources changing over time, an annotation made about a web resource today may no longer be relevant to the representation that is served from that same resource tomorrow. We assume the existence of archived versions of resources, and combine the temporal features of the emerging Open Annotation data model with the capability offered by the Memento framework that allows seamless navigation from the URI of a resource to archived versions of that resource, and arrive at a solution that provides guarantees regarding the persistence of web annotations over time. More specifically, we provide theoretical solutions and proof-of-concept experimental evaluations for two problems: reconstructing an existing annotation so that the correct archived version is displayed for all resources involved in the annotation, and retrieving all annotations that involve a given archived version of a web resource.

  2. Information theory applied to the sparse gene ontology annotation network to predict novel gene function

    Science.gov (United States)

    Tao, Ying; Li, Jianrong

    2010-01-01

    Motivation Despite advances in the gene annotation process, the functions of a large portion of the gene products remain insufficiently characterized. In addition, the “in silico” prediction of novel Gene Ontology (GO) annotations for partially characterized gene functions or processes is highly dependent on reverse genetic or function genomics approaches. Results We propose a novel approach, Information Theory-based Semantic Similarity (ITSS), to automatically predict molecular functions of genes based on Gene Ontology annotations. We have demonstrated using a 10-fold cross-validation that the ITSS algorithm obtains prediction accuracies (Precision 97%, Recall 77%) comparable to other machine learning algorithms when applied to similarly dense annotated portions of the GO datasets. In addition, such method can generate highly accurate predictions in sparsely annotated portions of GO, in which previous algorithm failed to do so. As a result, our technique generates an order of magnitude more gene function predictions than previous methods. Further, this paper presents the first historical rollback validation for the predicted GO annotations, which may represent more realistic conditions for an evaluation than generally used cross-validations type of evaluations. By manually assessing a random sample of 100 predictions conducted in a historical roll-back evaluation, we estimate that a minimum precision of 51% (95% confidence interval: 43%–58%) can be achieved for the human GO Annotation file dated 2003. Availability The program is available on request. The 97,732 positive predictions of novel gene annotations from the 2005 GO Annotation dataset are available at http://phenos.bsd.uchicago.edu/mphenogo/prediction_result_2005.txt. PMID:17646340

  3. Foundation stones for a real socio-environmental integration in projects' impact assessments

    Science.gov (United States)

    Andres Dominguez-Gomez, J.

    2015-04-01

    In the last twenty years, both the increase in academic production and the expansion of professional involvement in Environmental Impact Assessment (EIA) and Social Impact Assessment (SIA), have evidenced growing scientific and business interest in risk and impact analysis. However, this growth has not brought with it a parallel progress in addressing their main shortcomings: insufficient integration of environmental and social features into development project analyses and, in cases where the social aspects are considered, technical-methodological failings in their diagnosis and assessment. It is clear that these weaknesses carry with them substantial threats to the sustainability (social, environmental and economic) of schemes which impact on the environment, and in consequence, to the local contexts where they are carried out and to the delicate balance of the global ecosystem. This paper argue that, in a sociological context of growing complexity, four foundation-stones are required to underpin research methodologies (for both diagnosis and assessment) in the socio-environmental risks of development projects: a theoretical foundation in actor-network theory; an ethical grounding in values which are internationally recognized though not always carried through into practice; a (new) epistemological-scientific base; and a methodological foundation in social participation.

  4. Emergy Evaluation: A Tool for the Assessment of Sustainability in Project Development

    Directory of Open Access Journals (Sweden)

    Natalia Andrea Cano Londoño

    2014-02-01

    Full Text Available This contributiondescribes the basic principles of the emergy accounting method as a technique for quantitativeassessment of sustainability in developing projects. Emergy determines the amount of energy used directly and indirectly for generating resources, services and products. In addition,this analytical method integrates economics, ecology and thermodynamics.This allows a comprehensive assessment of the economic, social and environmental impacts in a theoretical way. Currently, Emergy evaluation is considered as one of the life cycle sustainability assessment methods in areas similar to ecological, economics, and environmental engineering. Furthermore, the entire methodological path for the application and development of the emergy accounting method was well described. In addition, some case studies where emergy has been the key data needed for sustainability decision making were analyzed and discussed. This work further provides the practical connection between theoretical definitions of emergy, data needs, and mathematical definitions of indicators for emergy sustainability assessment. With the accomplishment of this contribution, emergy assessment can be achieved and proposed as a tool for the development of sustainable projects.

  5. Workplace-based assessment of communication skills: A pilot project addressing feasibility, acceptance and reliability

    Science.gov (United States)

    Weyers, Simone; Jemi, Iman; Karger, André; Raski, Bianca; Rotthoff, Thomas; Pentzek, Michael; Mortsiefer, Achim

    2016-01-01

    Background: Imparting communication skills has been given great importance in medical curricula. In addition to standardized assessments, students should communicate with real patients in actual clinical situations during workplace-based assessments and receive structured feedback on their performance. The aim of this project was to pilot a formative testing method for workplace-based assessment. Our investigation centered in particular on whether or not physicians view the method as feasible and how high acceptance is among students. In addition, we assessed the reliability of the method. Method: As part of the project, 16 students held two consultations each with chronically ill patients at the medical practice where they were completing GP training. These consultations were video-recorded. The trained mentoring physician rated the student’s performance and provided feedback immediately following the consultations using the Berlin Global Rating scale (BGR). Two impartial, trained raters also evaluated the videos using BGR. For qualitative and quantitative analysis, information on how physicians and students viewed feasibility and their levels of acceptance was collected in written form in a partially standardized manner. To test for reliability, the test-retest reliability was calculated for both of the overall evaluations given by each rater. The inter-rater reliability was determined for the three evaluations of each individual consultation. Results: The formative assessment method was rated positively by both physicians and students. It is relatively easy to integrate into daily routines. Its significant value lies in the personal, structured and recurring feedback. The two overall scores for each patient consultation given by the two impartial raters correlate moderately. The degree of uniformity among the three raters in respect to the individual consultations is low. Discussion: Within the scope of this pilot project, only a small sample of physicians and

  6. Workplace-based assessment of communication skills: A pilot project addressing feasibility, acceptance and reliability.

    Science.gov (United States)

    Weyers, Simone; Jemi, Iman; Karger, André; Raski, Bianca; Rotthoff, Thomas; Pentzek, Michael; Mortsiefer, Achim

    2016-01-01

    Background: Imparting communication skills has been given great importance in medical curricula. In addition to standardized assessments, students should communicate with real patients in actual clinical situations during workplace-based assessments and receive structured feedback on their performance. The aim of this project was to pilot a formative testing method for workplace-based assessment. Our investigation centered in particular on whether or not physicians view the method as feasible and how high acceptance is among students. In addition, we assessed the reliability of the method. Method: As part of the project, 16 students held two consultations each with chronically ill patients at the medical practice where they were completing GP training. These consultations were video-recorded. The trained mentoring physician rated the student's performance and provided feedback immediately following the consultations using the Berlin Global Rating scale (BGR). Two impartial, trained raters also evaluated the videos using BGR. For qualitative and quantitative analysis, information on how physicians and students viewed feasibility and their levels of acceptance was collected in written form in a partially standardized manner. To test for reliability, the test-retest reliability was calculated for both of the overall evaluations given by each rater. The inter-rater reliability was determined for the three evaluations of each individual consultation. Results: The formative assessment method was rated positively by both physicians and students. It is relatively easy to integrate into daily routines. Its significant value lies in the personal, structured and recurring feedback. The two overall scores for each patient consultation given by the two impartial raters correlate moderately. The degree of uniformity among the three raters in respect to the individual consultations is low. Discussion: Within the scope of this pilot project, only a small sample of physicians and

  7. Workplace-based assessment of communication skills: A pilot project addressing feasibility, acceptance and reliability

    Directory of Open Access Journals (Sweden)

    Weyers, Simone

    2016-11-01

    Full Text Available Background: Imparting communication skills has been given great importance in medical curricula. In addition to standardized assessments, students should communicate with real patients in actual clinical situations during workplace-based assessments and receive structured feedback on their performance. The aim of this project was to pilot a formative testing method for workplace-based assessment. Our investigation centered in particular on whether or not physicians view the method as feasible and how high acceptance is among students. In addition, we assessed the reliability of the method.Method: As part of the project, 16 students held two consultations each with chronically ill patients at the medical practice where they were completing GP training. These consultations were video-recorded. The trained mentoring physician rated the student’s performance and provided feedback immediately following the consultations using the Berlin Global Rating scale (BGR. Two impartial, trained raters also evaluated the videos using BGR. For qualitative and quantitative analysis, information on how physicians and students viewed feasibility and their levels of acceptance was collected in written form in a partially standardized manner. To test for reliability, the test-retest reliability was calculated for both of the overall evaluations given by each rater. The inter-rater reliability was determined for the three evaluations of each individual consultation.Results: The formative assessment method was rated positively by both physicians and students. It is relatively easy to integrate into daily routines. Its significant value lies in the personal, structured and recurring feedback. The two overall scores for each patient consultation given by the two impartial raters correlate moderately. The degree of uniformity among the three raters in respect to the individual consultations is low.Discussion: Within the scope of this pilot project, only a small sample

  8. DIMA – Annotation guidelines for German intonation

    DEFF Research Database (Denmark)

    Kügler, Frank; Smolibocki, Bernadett; Arnold, Denis

    2015-01-01

    easier since German intonation is currently annotated according to different models. To this end, we aim to provide guidelines that are easy to learn. The guidelines were evaluated running an inter-annotator reliability study on three different speech styles (read speech, monologue and dialogue......This paper presents newly developed guidelines for prosodic annotation of German as a consensus system agreed upon by German intonologists. The DIMA system is rooted in the framework of autosegmental-metrical phonology. One important goal of the consensus is to make exchanging data between groups...

  9. Crowdsourcing and annotating NER for Twitter #drift

    DEFF Research Database (Denmark)

    Fromreide, Hege; Hovy, Dirk; Søgaard, Anders

    2014-01-01

    We present two new NER datasets for Twitter; a manually annotated set of 1,467 tweets (kappa=0.942) and a set of 2,975 expert-corrected, crowdsourced NER annotated tweets from the dataset described in Finin et al. (2010). In our experiments with these datasets, we observe two important points: (a......) language drift on Twitter is significant, and while off-the-shelf systems have been reported to perform well on in-sample data, they often perform poorly on new samples of tweets, (b) state-of-the-art performance across various datasets can beobtained from crowdsourced annotations, making it more feasible...

  10. Collaborative Action Research as a Tool for Generating Formative Feedback on Teachers' Classroom Assessment Practice: The KREST Project

    Science.gov (United States)

    Harrison, Christine

    2013-01-01

    This paper sets out to explore science teachers' classroom assessment practices and outlines some of the tensions and synergies in changing assessment practices. It describes episodes from a collaborative action research project with science teachers designed to support the strengthening of classroom assessment practices--the King's…

  11. Solar technology assessment project. Volume 3: Active space heating and hot water supply with solar energy

    Science.gov (United States)

    Karaki, S.; Loef, G. O. G.

    1981-04-01

    Several types of solar water heaters are described and assessed. These include thermosiphon water heaters and pump circulation water heaters. Auxiliary water heating is briefly discussed, and new and retrofit systems are compared. Liquid-based space heating systems and solar air heaters are described and assessed, auxiliary space heating are discussed, and new and retrofit solar space heating systems are compared. The status of flat plate collectors, evacuated tube collectors, and thermal storage systems is examined. Systems improvements, reliability, durability and maintenance are discussed. The economic assessment of space and water heating systems includes a comparison of new systems costs with conventional fuels, and sales history and projections. The variety of participants in the solar industry and users of solar heat is discussed, and various incentives and barriers to solar heating are examined. Several policy implications are discussed, and specific government actions are recommended.

  12. Addressing Climate Change Mitigation and Adaptation Together: A Global Assessment of Agriculture and Forestry Projects

    Science.gov (United States)

    Kongsager, Rico; Locatelli, Bruno; Chazarin, Florie

    2016-02-01

    Adaptation and mitigation share the ultimate purpose of reducing climate change impacts. However, they tend to be considered separately in projects and policies because of their different objectives and scales. Agriculture and forestry are related to both adaptation and mitigation: they contribute to greenhouse gas emissions and removals, are vulnerable to climate variations, and form part of adaptive strategies for rural livelihoods. We assessed how climate change project design documents (PDDs) considered a joint contribution to adaptation and mitigation in forestry and agriculture in the tropics, by analyzing 201 PDDs from adaptation funds, mitigation instruments, and project standards [e.g., climate community and biodiversity (CCB)]. We analyzed whether PDDs established for one goal reported an explicit contribution to the other (i.e., whether mitigation PDDs contributed to adaptation and vice versa). We also examined whether the proposed activities or expected outcomes allowed for potential contributions to the two goals. Despite the separation between the two goals in international and national institutions, 37 % of the PDDs explicitly mentioned a contribution to the other objective, although only half of those substantiated it. In addition, most adaptation (90 %) and all mitigation PDDs could potentially report a contribution to at least partially to the other goal. Some adaptation project developers were interested in mitigation for the prospect of carbon funding, whereas mitigation project developers integrated adaptation to achieve greater long-term sustainability or to attain CCB certification. International and national institutions can provide incentives for projects to harness synergies and avoid trade-offs between adaptation and mitigation.

  13. Addressing Climate Change Mitigation and Adaptation Together: A Global Assessment of Agriculture and Forestry Projects.

    Science.gov (United States)

    Kongsager, Rico; Locatelli, Bruno; Chazarin, Florie

    2016-02-01

    Adaptation and mitigation share the ultimate purpose of reducing climate change impacts. However, they tend to be considered separately in projects and policies because of their different objectives and scales. Agriculture and forestry are related to both adaptation and mitigation: they contribute to greenhouse gas emissions and removals, are vulnerable to climate variations, and form part of adaptive strategies for rural livelihoods. We assessed how climate change project design documents (PDDs) considered a joint contribution to adaptation and mitigation in forestry and agriculture in the tropics, by analyzing 201 PDDs from adaptation funds, mitigation instruments, and project standards [e.g., climate community and biodiversity (CCB)]. We analyzed whether PDDs established for one goal reported an explicit contribution to the other (i.e., whether mitigation PDDs contributed to adaptation and vice versa). We also examined whether the proposed activities or expected outcomes allowed for potential contributions to the two goals. Despite the separation between the two goals in international and national institutions, 37% of the PDDs explicitly mentioned a contribution to the other objective, although only half of those substantiated it. In addition, most adaptation (90%) and all mitigation PDDs could potentially report a contribution to at least partially to the other goal. Some adaptation project developers were interested in mitigation for the prospect of carbon funding, whereas mitigation project developers integrated adaptation to achieve greater long-term sustainability or to attain CCB certification. International and national institutions can provide incentives for projects to harness synergies and avoid trade-offs between adaptation and mitigation.

  14. Interactive E-Lecture Using Video Annotation in Learning Groups

    Directory of Open Access Journals (Sweden)

    Atul S. Choudhary

    2016-06-01

    Full Text Available Now day‘s users are interested in distance learning as there is rapid growth in digital data due to day today development in information as well as computer technology. Also its applications or usage have tremendous response in market. Peoples are attracted towards interactivity in each thing, we found that for e-learning is a very interactive way to learn and understand things. Currently, YouTube is the global way of video sharing. It is having certain limitations such as, it having inactivity in online learning. In online study students expecting some extra guidelines from given resources. In this project we developed video annotation system for foster active learning. In this project, we achieved active participation of students. There is certain kind of technologies that extracts some important keywords from textual information. MOOC‘s model is another technology to solve interaction problem of users in active learning. It also has limitations that it suffered from the problem of gamification. Our system is interactive as it provides real-time annotations to the video. In our system user can give their active participation as they have direct interaction to our system. As part of our contribution in this project we did SVM analysis to provide recommended videos for end users. SVM is Support Vector Machine algorithm; it classifies the things according to user interest. So, in our system user can search for video and they get recommended video list for their study.

  15. Determining water sensitive urban design project benefits using a multi-criteria assessment tool.

    Science.gov (United States)

    Urrutiaguer, M; Lloyd, S; Lamshed, S

    2010-01-01

    The integration of urban water cycle management with urban planning and design is referred to as 'Water Sensitive Urban Design' or 'WSUD' in Australia; one of the key elements of WSUD is the management of urban stormwater. In early 2006, the Victorian Government released the Yarra River Action Plan, which allocated $20 million towards tackling urban stormwater pollution. To help ensure this money is allocated in an equitable and transparent manner across all metropolitan local governments a multi-criteria assessment tool has been developed. This paper presents an overview of the multi-criteria assessment tool developed and adopted for selecting WSUD projects that are eligible for funding through Melbourne Water's Stormwater Program. This tool considers three types of indicators: environmental, engagement (engagement with stakeholders and local government capacity building) and financial. Within each category, a series of indicators of different weightings are applied to score a project. Where initial concept designs do not meet the Program criteria, additional work is undertaken to refine and improve the project. The tool and its use are illustrated with a case study.

  16. Meteor showers an annotated catalog

    CERN Document Server

    Kronk, Gary W

    2014-01-01

    Meteor showers are among the most spectacular celestial events that may be observed by the naked eye, and have been the object of fascination throughout human history. In “Meteor Showers: An Annotated Catalog,” the interested observer can access detailed research on over 100 annual and periodic meteor streams in order to capitalize on these majestic spectacles. Each meteor shower entry includes details of their discovery, important observations and orbits, and gives a full picture of duration, location in the sky, and expected hourly rates. Armed with a fuller understanding, the amateur observer can better view and appreciate the shower of their choice. The original book, published in 1988, has been updated with over 25 years of research in this new and improved edition. Almost every meteor shower study is expanded, with some original minor showers being dropped while new ones are added. The book also includes breakthroughs in the study of meteor showers, such as accurate predictions of outbursts as well ...

  17. Challenges in the Assessment of Medical Devices: The MedtecHTA Project.

    Science.gov (United States)

    Tarricone, Rosanna; Torbica, Aleksandra; Drummond, Michael

    2017-02-01

    Assessing medical devices (MDs) raises challenges which require us to reflect on whether current methods are adequate. Major features of devices are: (i) device-operator interaction can generate learning curve effects; (ii) incremental nature of innovation needs to be addressed by careful identification of the alternatives for comparative and incremental cost-effectiveness analysis; and (iii) broader organizational impact in terms of training and infrastructure, coupled with dynamic pricing, requires a more flexible approach to costing. The objective of the MedtecHTA project was to investigate improvements in HTA methods to allow for more comprehensive evaluation of MDs. It consisted of several work packages concerning (i) the available evidence on the currently adopted approaches for regulation and HTA of medical devices; (ii) the geographical variation in access to MDs; (iii) the development of methodological frameworks for conducting comparative effectiveness research and economic evaluation of MDs; and (iv) the organizational impact of MDs. This introductory paper summarizes the main results of the project and draws out the main overarching themes. This supplement represents a comprehensive report of all the main findings of the MedtecHTA project, and it is intended to be the main source for researchers and policy makers wanting information on the project. © 2017 The Authors. Health Economics published by John Wiley & Sons, Ltd.

  18. Objective assessment of surgical technique in rotation and nasal projection variation

    Directory of Open Access Journals (Sweden)

    Marina Serrato Coelho Fagundes

    2016-02-01

    Full Text Available ABSTRACT INTRODUCTION: In rhinoplasty, facial esthetic analysis is critical for proper surgical planning. Parameters such as rotation and nasal projection should be routinely evaluated. Few studies have objectively assessed changes in facial angles postoperatively. OBJECTIVE: To evaluate the effectiveness of medial intercrural sutures and of rotation of the nasal tip on the increase of rotation and nasal projection in Caucasian patients undergoing primary rhinoplasty. METHODS: A prospective study carried out between 2011 and 2013, with 27 patients treated with primary rhinoplasty with a basic technique by the same surgeon, with medial intercrural sutures and rotation of the nasal tip. Rotation and nasal projection were measured from photographs obtained preoperatively and after 12 months. RESULTS: All 27 patients completed the study. The mean age was 27.1 years. There was a mean increase of 8.4° in the rotation - a statistically significant value. There was no significant change in the projection. CONCLUSION: The medial intercrural and nasal tip rotation sutures are effective in increasing nasal rotation in Caucasian patients undergoing rhinoplasty.

  19. WindNet: Improving the impact assessment of wind power projects

    Directory of Open Access Journals (Sweden)

    Christopher R. Jones

    2014-12-01

    Full Text Available Growing international demand for renewable energy has led to rapid growth in the wind power sector and wind farms are becoming an increasingly common feature of landscapes and seascapes in many countries. However, as the most appropriate locations within established markets are taken up, and as wind power penetrates new markets, there is an increasing likelihood that proposed projects will encroach on sensitive landscapes and residential areas. This will present challenges for the industry, particularly due to the impact that public opinion can have upon the outcomes of planning decisions about specific projects. This article introduces the four key dimensions of the WindNet programme, which are helping to elucidate some of the socio-technical debates that will likely shape the future of the wind power sector. The article outlines studies investigating (1 public responses to cumulative landscape and visual impacts, (2 the auditory impact of wind power projects on human health, (3 the science of wind farm design and its implications for planning, and (4 the relevance of the democratic deficit explanation of the so-called "social gap" in wind farm siting. The outcomes of the research being conducted by WindNet stand to help reduce uncertainty within the planning process and assist in providing a more comprehensive and fairer assessment of the possible impacts associated with wind power project development.

  20. Assessing the influence of Environmental Impact Assessments on science and policy: an analysis of the Three Gorges Project.

    Science.gov (United States)

    Tullos, Desiree

    2009-07-01

    The need to understand and minimize negative environmental outcomes associated with large dams has both contributed to and benefited from the introduction and subsequent improvements in the Environmental Impact Assessment (EIA) process. However, several limitations in the EIA process remain, including those associated with the uncertainty and significance of impact projections. These limitations are directly related to the feedback between science and policy, with information gaps in scientific understanding discovered through the EIA process contributing valuable recommendations on critical focus areas for prioritizing and funding research within the fields of ecological conservation and river engineering. This paper presents an analysis of the EIA process for the Three Gorges Project (TGP) in China as a case study for evaluating this feedback between the EIA and science and policy. For one of the best-studied public development projects in the world, this paper presents an investigation into whether patterns exist between the scientific interest (via number of publications) in environmental impacts and (a) the identification of impacts as uncertain or priority by the EIA, (b) decisions or political events associated with the dam, and (c) impact type. This analysis includes the compilation of literature on TGP, characterization of ecosystem interactions and responses to TGP through a hierarchy of impacts, coding of EIA impacts as "uncertain" impacts that require additional study and "priority" impacts that have particularly high significance, mapping of an event chronology to relate policies, institutional changes, and decisions about TGP as "events" that could influence the focus and intensity of scientific investigation, and analysis of the number of publications by impact type and order within the impact hierarchy. From these analyses, it appears that the availability and consistency of scientific information limit the accuracy of environmental impact

  1. Microtask crowdsourcing for disease mention annotation in PubMed abstracts.

    Science.gov (United States)

    Good, Benjamin M; Nanis, Max; Wu, Chunlei; Su, Andrew I

    2015-01-01

    Identifying concepts and relationships in biomedical text enables knowledge to be applied in computational analyses. Many biological natural language processing (BioNLP) projects attempt to address this challenge, but the state of the art still leaves much room for improvement. Progress in BioNLP research depends on large, annotated corpora for evaluating information extraction systems and training machine learning models. Traditionally, such corpora are created by small numbers of expert annotators often working over extended periods of time. Recent studies have shown that workers on microtask crowdsourcing platforms such as Amazon's Mechanical Turk (AMT) can, in aggregate, generate high-quality annotations of biomedical text. Here, we investigated the use of the AMT in capturing disease mentions in PubMed abstracts. We used the NCBI Disease corpus as a gold standard for refining and benchmarking our crowdsourcing protocol. After several iterations, we arrived at a protocol that reproduced the annotations of the 593 documents in the 'training set' of this gold standard with an overall F measure of 0.872 (precision 0.862, recall 0.883). The output can also be tuned to optimize for precision (max = 0.984 when recall = 0.269) or recall (max = 0.980 when precision = 0.436). Each document was completed by 15 workers, and their annotations were merged based on a simple voting method. In total 145 workers combined to complete all 593 documents in the span of 9 days at a cost of $.066 per abstract per worker. The quality of the annotations, as judged with the F measure, increases with the number of workers assigned to each task; however minimal performance gains were observed beyond 8 workers per task. These results add further evidence that microtask crowdsourcing can be a valuable tool for generating well-annotated corpora in BioNLP. Data produced for this analysis are available at http://figshare.com/articles/Disease_Mention_Annotation_with_Mechanical_Turk/1126402.

  2. SASL: A Semantic Annotation System for Literature

    Science.gov (United States)

    Yuan, Pingpeng; Wang, Guoyin; Zhang, Qin; Jin, Hai

    Due to ambiguity, search engines for scientific literatures may not return right search results. One efficient solution to the problems is to automatically annotate literatures and attach the semantic information to them. Generally, semantic annotation requires identifying entities before attaching semantic information to them. However, due to abbreviation and other reasons, it is very difficult to identify entities correctly. The paper presents a Semantic Annotation System for Literature (SASL), which utilizes Wikipedia as knowledge base to annotate literatures. SASL mainly attaches semantic to terminology, academic institutions, conferences, and journals etc. Many of them are usually abbreviations, which induces ambiguity. Here, SASL uses regular expressions to extract the mapping between full name of entities and their abbreviation. Since full names of several entities may map to a single abbreviation, SASL introduces Hidden Markov Model to implement name disambiguation. Finally, the paper presents the experimental results, which confirm SASL a good performance.

  3. Annotation and retrieval in protein interaction databases

    Science.gov (United States)

    Cannataro, Mario; Hiram Guzzi, Pietro; Veltri, Pierangelo

    2014-06-01

    Biological databases have been developed with a special focus on the efficient retrieval of single records or the efficient computation of specialized bioinformatics algorithms against the overall database, such as in sequence alignment. The continuos production of biological knowledge spread on several biological databases and ontologies, such as Gene Ontology, and the availability of efficient techniques to handle such knowledge, such as annotation and semantic similarity measures, enable the development on novel bioinformatics applications that explicitly use and integrate such knowledge. After introducing the annotation process and the main semantic similarity measures, this paper shows how annotations and semantic similarity can be exploited to improve the extraction and analysis of biologically relevant data from protein interaction databases. As case studies, the paper presents two novel software tools, OntoPIN and CytoSeVis, both based on the use of Gene Ontology annotations, for the advanced querying of protein interaction databases and for the enhanced visualization of protein interaction networks.

  4. Modeling Social Annotation: a Bayesian Approach

    CERN Document Server

    Plangprasopchok, Anon

    2008-01-01

    Collaborative tagging systems, such as del.icio.us, CiteULike, and others, allow users to annotate objects, e.g., Web pages or scientific papers, with descriptive labels called tags. The social annotations, contributed by thousands of users, can potentially be used to infer categorical knowledge, classify documents or recommend new relevant information. Traditional text inference methods do not make best use of socially-generated data, since they do not take into account variations in individual users' perspectives and vocabulary. In a previous work, we introduced a simple probabilistic model that takes interests of individual annotators into account in order to find hidden topics of annotated objects. Unfortunately, our proposed approach had a number of shortcomings, including overfitting, local maxima and the requirement to specify values for some parameters. In this paper we address these shortcomings in two ways. First, we extend the model to a fully Bayesian framework. Second, we describe an infinite ver...

  5. Annotation of Scientific Summaries for Information Retrieval

    CERN Document Server

    Ibekwe-Sanjuan, Fidelia; Eric, Sanjuan; Eric, Charton

    2011-01-01

    We present a methodology combining surface NLP and Machine Learning techniques for ranking asbtracts and generating summaries based on annotated corpora. The corpora were annotated with meta-semantic tags indicating the category of information a sentence is bearing (objective, findings, newthing, hypothesis, conclusion, future work, related work). The annotated corpus is fed into an automatic summarizer for query-oriented abstract ranking and multi- abstract summarization. To adapt the summarizer to these two tasks, two novel weighting functions were devised in order to take into account the distribution of the tags in the corpus. Results, although still preliminary, are encouraging us to pursue this line of work and find better ways of building IR systems that can take into account semantic annotations in a corpus.

  6. The ILE project: a scalable option for customized information literacy instruction and assessment

    Directory of Open Access Journals (Sweden)

    Steve Borrelli

    2010-03-01

    Full Text Available With the vast amount of information available today, information literacy (IL education is a critical component of undergraduate education necessary to prepare students for tomorrow’s world. Instructors want students to demonstrate critical thinking skills and are often disappointed with student submissions resulting from undeveloped IL skills. Library Instruction programs are often tasked with addressing this educational need and often struggle to find a scalable method to provide IL instruction to the student body. The Information Literacy Education (ILE Project is an asynchronous learning environment tailored to deliver instruction and assessment. Posited as a customizable option to present IL instruction, this flexible learning environment can be tailored to develop skills not taught in the classroom setting, but often expected of the students as they complete their research projects. Applications of ILE at a major research institution are presented demonstrating the variety of ways the Library Instruction department has integrated ILE into its curriculum.

  7. Fluid Annotations in a Open World

    DEFF Research Database (Denmark)

    Zellweger, Polle Trescott; Bouvin, Niels Olof; Jehøj, Henning

    2001-01-01

    Fluid Documents use animated typographical changes to provide a novel and appealing user experience for hypertext browsing and for viewing document annotations in context. This paper describes an effort to broaden the utility of Fluid Documents by using the open hypermedia Arakne Environment to l...... to layer fluid annotations and links on top of abitrary HTML pages on the World Wide Web. Changes to both Fluid Documents and Arakne are required....

  8. Semantic Annotation to Support Automatic Taxonomy Classification

    DEFF Research Database (Denmark)

    Kim, Sanghee; Ahmed, Saeema; Wallace, Ken

    2006-01-01

    , the annotations identify which parts of a text are more important for understanding its contents. The extraction of salient sentences is a major issue in text summarisation. Commonly used methods are based on statistical analysis, but for subject-matter type texts, linguistically motivated natural language...... processing techniques, like semantic annotations, are preferred. An experiment to test the method using 140 documents collected from industry demonstrated that classification accuracy can be improved by up to 16%....

  9. Leakage Risk Assessment for a Potential CO2 Storage Project in Saskatchewan, Canada

    Energy Technology Data Exchange (ETDEWEB)

    Houseworth, J.E.; Oldenburg, C.M.; Mazzoldi, A.; Gupta, A.K.; Nicot, J.-P.; Bryant, S.L.

    2011-05-01

    A CO{sub 2} sequestration project is being considered to (1) capture CO{sub 2} emissions from the Consumers Cooperative Refineries Limited at Regina, Saskatchewan and (2) geologically sequester the captured CO{sub 2} locally in a deep saline aquifer. This project is a collaboration of several industrial and governmental organizations, including the Petroleum Technology Research Centre (PTRC), Sustainable Development Technology Canada (SDTC), SaskEnvironment Go Green Fund, SaskPower, CCRL, Schlumberger Carbon Services, and Enbridge. The project objective is to sequester 600 tonnes CO{sub 2}/day. Injection is planned to start in 2012 or 2013 for a period of 25 years for a total storage of approximately 5.5 million tonnes CO{sub 2}. This report presents an assessment of the leakage risk of the proposed project using a methodology known as the Certification Framework (CF). The CF is used for evaluating CO{sub 2} leakage risk associated with geologic carbon sequestration (GCS), as well as brine leakage risk owing to displacement and pressurization of brine by the injected CO{sub 2}. We follow the CF methodology by defining the entities (so-called Compartments) that could be impacted by CO{sub 2} leakage, the CO{sub 2} storage region, the potential for leakage along well and fault pathways, and the consequences of such leakage. An understanding of the likelihood and consequences of leakage forms the basis for understanding CO{sub 2} leakage risk, and forms the basis for recommendations of additional data collection and analysis to increase confidence in the risk assessment.

  10. Project SAFE. Update of the SFR-1 safety assessment. Phase 1

    Energy Technology Data Exchange (ETDEWEB)

    Andersson, Johan [ed.] [Golder Associates AB (Sweden); Riggare, P. [ed.] [Swedish Nuclear Fuel and Waste Management Co., Stockholm (Sweden); Skagius, K. [ed.] [Kemakta Konsult AB, Stockholm (Sweden)

    1998-10-01

    SFR-1 is a facility for disposal of low-level radioactive operational waste from the nuclear power plants in Sweden. Low-level radioactive waste from industry, medicine, and research is also disposed in SFR-1. The facility is situated in bedrock beneath the Baltic Sea, 1 km off the coast near the Forsmark nuclear power plant. SFR-1 was built between the years 1983 and 1988. An assessment of the long-term performance of the facility was included in the vast documentation that was a part of the application for an operational license. The assessment was presented in the form of a final safety report. In the operational licence for SFR-1 it is stated that renewed safety assessments should be carried out at least each ten years. In order to meet this demand SKB has launched a special project, SAFE (Safety Assessment of Final Disposal of Operational Radioactive Waste). The aim of the project is to update the safety analysis and to prepare a safety report that will be presented to the Swedish authorities not later than year 2000. Project SAFE is divided into three phases. The first phase is a prestudy, and the results of the prestudy are given in this report. The aim of the prestudy is to identify issues where additional studies would improve the basis for the updated safety analysis as well as to suggest how these studies should be carried out. The work has been divided into six different topics, namely the inventory, the near field, the far field, the biosphere, radionuclide transport calculations and scenarios. For each topic the former safety reports and regulatory reviews are scrutinised and needs for additional work is identified. The evaluations are given in appendices covering the respective topics. The main report is a summary of the appendices with a more stringent description of the repository system and the processes that are of interest and therefore should be addressed in an updated safety assessment. However, it should be pointed out that one of the

  11. NOAA's Coral Reef Conservation Program: 2016 projects to assess coral resilence and the resilence of communities to climate change

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In 2016 the following projects will take place to assess coral resilence and the resilence of communities to climate change: Climate and resilience-based...

  12. Regional assessment of Climate change impacts in the Mediterranean: the CIRCE project

    Science.gov (United States)

    Iglesias, A.

    2011-12-01

    The CIRCE project has developed for the first time an assessment of the climate change impacts in the Mediterranean area. The objectives of the project are: to predict and to quantify physical impacts of climate change in the Mediterranean area; to evaluate the consequences of climate change for the society and the economy of the populations located in the Mediterranean area; to develop an integrated approach to understand combined effects of climate change; and to identify adaptation and mitigation strategies in collaboration with regional stakeholders. The CIRCE Project, coordinated by the Instituto Nazionale di Geofisca e Vulcanologia, started on 1st April 2007 and ended in a policy conference in Rome on June 2011. CIRCE involves 64 partners from Europe, Middle East and North Africa working together to evaluate the best strategies of adaptation to the climate change in the Mediterranean basin. CIRCE wants to understand and to explain how climate will change in the Mediterranean area bringing together the natural sciences community and social community in a new integrated and comprehensive way. The project has investigated how global and Mediterranean climates interact, how the radiative properties of the atmosphere and the radiative fluxes vary, the interaction between cloudiness and aerosol, the modifications in the water cycle. Recent observed modifications in the climate variables and detected trends will be compared. The economic and social consequences of climate change are evaluated by analysing direct impacts on migration, tourism and energy markets together with indirect impacts on the economic system. CIRCE has produced results about the consequences on agriculture, forests and ecosystems, human health and air quality. The variability of extreme events in the future scenario and their impacts is also assessed. A rigorous common framework, including a set of quantitative indicators developed specifically for the Mediterranean environment was be developed

  13. The Santa Quiteria project - an environmental impact assessment of its phosphogypsum stack

    Energy Technology Data Exchange (ETDEWEB)

    Reis, Rocio G. dos; Lauria, Dejanira da Costa, E-mail: rocio@ird.gov.br, E-mail: dejanira@ird.gov.br [Instituto de Radioprotecao e Dosimetria (IRD/CNEN-RJ), Rio de Janeiro, RJ (Brazil)

    2011-07-01

    The Santa Quiteria Project is located in Ceara state, Brazil. Actually, it is the biggest Brazilian uranium mine project. A peculiarity of this project is the association of uranium with phosphate and the mining and processing of both together by two enterprises. A private company will be responsible for the production of phosphoric acid and a state owned company will be responsible for the production yellow cake. At full capacity, the plant will generate 10% of Brazil's total annual phosphoric acid production and 1,500 tons of yellow cake per year. The reaction, by which phosphoric acid is produced, generates phosphogypsum (PG) as a by-product. The ratio of phosphogypsum to phosphoric acid is around 5 to 1. After all the phosphate has been extracted and processed, it is expected that some 37 million tons of phosphogypsum with 13 Bq/g of radium 226 will be produced. Aiming to assess the potential radioactive impact of this PG stack on the workers and surrounding inhabitants, a generic assessment was performed by RESRAD offsite and onsite codes. A hypothetical farmer scenario was used to calculate potential dose out of the project boundary and over the stack piles, after the shutdown of the project. The annual exposure dose of workers according to the progress of processing was also evaluated. In conservative approach the potential public dose was estimated as 2.5 mSv/y. This study identified the rainfall erosion index, the geometric shape of the PG stack and the fish consumption as parameters where an improvement of information and understanding could improve the quality of the dose assessment. The worker dose estimation stressed the need for action plan to mitigate worker exposures on the stack. In addition, the onsite public dose pointed out the importance of a planning for remediating the area after the shutdown of the plant, in order to assure that public and environment health will not be affected by the presence of the PG stack. (author)

  14. The Research group on the Learnings By Project ( APP in the IUT of Tarbes. Intermediate balance assessment and perspectives

    Directory of Open Access Journals (Sweden)

    Bertrand FAURE

    2008-01-01

    Full Text Available This article reports the works of the research’s group on project based learning (PBL methodologies at the technological institute of Tarbes: assessing the specific contribution of PBL compared to traditional instructions and building an enriched measure of learning during the project. It also presents the future developments of these works (evaluation the impact of PBL on student success.

  15. Application of the «Three sigma» rule in the risk assessment of investment project

    Directory of Open Access Journals (Sweden)

    Elizaveta P. Fadeyeva

    2011-06-01

    Full Text Available This report discusses calculation of quantitative risk assessment of investment project with the help of statistical methods and stochastic simulation. The investment project for production of GRP pipes will be implemented in 2011–2015 by «Prikamtrubproekt» Ltd. in the city of Naberezhnye Chelny.

  16. Application of the «Three sigma» rule in the risk assessment of investment project

    OpenAIRE

    Elizaveta P. Fadeyeva; Guzel R. Sharifullina; Raisa G. Spevakova

    2011-01-01

    This report discusses calculation of quantitative risk assessment of investment project with the help of statistical methods and stochastic simulation. The investment project for production of GRP pipes will be implemented in 2011–2015 by «Prikamtrubproekt» Ltd. in the city of Naberezhnye Chelny.

  17. TECHNIQUE OF THE ASSESSMENT ЩА INVESTMENT APPEAL OF INNOVATIVE PRO-JECTS IN GRAIN PRODUCTION

    Directory of Open Access Journals (Sweden)

    Gorpinchenko K. N.

    2014-02-01

    Full Text Available We have presented a technique of evaluation of in-vestment appeal of innovative projects in grain pro-duction in a way of innovative development of the meso-level, on the basis of the calculation of the inte-gral and the reference levels, and the assessment of innovation and investment projects, using a multicrite-rion approach

  18. Assessment of climate change impact on water diversion strategies of Melamchi Water Supply Project in Nepal

    Science.gov (United States)

    Shrestha, Sangam; Shrestha, Manish; Babel, Mukand S.

    2015-12-01

    This paper analyzes the climate change impact on water diversion plan of Melamchi Water Supply Project (MWSP) in Nepal. The MWSP is an interbasin water transfer project aimed at diverting water from the Melamchi River of the Indrawati River basin to Kathmandu Valley for drinking water purpose. Future temperature and precipitation of the basin were predicted using the outputs of two regional climate models (RCMs) and two general circulation models (GCMs) under two representative concentration pathway (RCP) scenarios which were then used as inputs to Soil and Water Assessment Tool (SWAT) to predict the water availability and evaluate the water diversion strategies in the future. The average temperature of the basin is projected to increase by 2.35 to 4.25 °C under RCP 4.5 and RCP 8.5, respectively, by 2085s. The average precipitation in the basin is projected to increase by 6-18 % in the future. The annual water availability is projected to increase in the future; however, the variability is observed in monthly water availability in the basin. The water supply and demand scenarios of Kathmandu Valley was also examined by considering the population increase, unaccounted for water and water diversion from MWSP in the future. It is observed that even with the additional supply of water from MWSP and reduction of unaccounted for water, the Kathmandu Valley will be still under water scarcity in the future. The findings of this study can be helpful to formulate water supply and demand management strategies in Kathmandu Valley in the context of climate change in the future.

  19. Assessment of Large Transport Infrastructure Projects: the CBA-DK model

    DEFF Research Database (Denmark)

    Salling, Kim Bang; Banister, David

    2008-01-01

    The scope of this paper is to present a newly developed decision support model to assess transport infrastructure projects: CBA-DK. The model makes use of conventional cost-benefit analysis resulting in aggregated single point estimates and quantitative risk analysis using Monte Carlo simulation...... resulting in interval results. The embedded uncertainties within traditional CBA such as ex-ante based investment costs and travel time savings are of particular concern. The methodological approach has been to apply suitable probability distribution functions on the uncertain parameters, thus resulting...

  20. Integrating Science and Land Management for the Conservation Effects Assessment Project (CEAP) in Southwestern Rangelands

    Science.gov (United States)

    Goodrich, D. C.; Heilman, P.; Nearing, M.; Speath, K.; Hernandez, M.; Wei, H.; Holifield-Collins, C.; Kautz, M.; Nichols, M.; Barlow, J.; Guertin, P.; Burns, S.; Stone, J. J.; Weltz, M.; Metz, L.; Norfleet, L.; Duriancik, L.; Johnson, M.

    2013-12-01

    Farm Bill legislation enacted by Congress in 2002 directed the U.S. Department of Agriculture to assess of the benefits and efficacy of conservation practices provided by a variety of USDA programs. Benefits include improved agricultural production, reduction of erosion and associated nutrient losses, improved water quality, improved soil resilience, and improved habitat among others. To conduct the assessment, the USDA initiated CEAP or the Conservation Effects Assessment Project in 2003, which included a national assessment complemented by small watershed studies. The national assessment started in eastern and midwestern cultivated croplands and has now progressed to western rangelands. This presentation will discuss the challenges of assessing the effects of rangeland conservation practices in a period of unusually hot and dry climatic conditions in the Cienega Creek Watershed (CCW) located southeast of Tucson, Arizona. As is common in the western U.S., the CCW consists of a patchwork of private and public lands in the west with much of the public lands leased for grazing cattle. The watershed also has high recreational value and provides many ecosystem services, including wildlife habitat qualities and flood protection to Tucson. A combination of monitoring, modeling, and remote sensing was utilized in the assessment. Conservation spending in the watershed ramped up in 1997. However, the 16-year period from 1997-2012 contains almost half of the 23 driest seasons (lowest 20 percentile) from the 117-year observed precipitation record. Initial results indicate that Landsat remotely sensed images can be effectively used to estimate both green and senescent canopy cover. This enabled detection of the impacts of drought and changes in canopy cover from practices such as prescribed fire and mechanical brush removal. Cienega Creek Watershed - Land Ownership

  1. Spreadsheet based methodology to assess offshore wind capacity factors in project planning stage

    Energy Technology Data Exchange (ETDEWEB)

    Madariaga, Ander; Martin, Jose Luis; Martinez de Alegria, Inigo [University of the Basque Country (UPV/EHU), Bilbao (Spain). Engineering Faculty; Ceballos, Salvador [Tecnalia Research and Innovation, Parque Tecnologico de Bizkaia, Derio (Spain); Anaya-Lara, Olimpo [Strathclyde Univ., Glasgow (United Kingdom). Inst. for Energy and Environment

    2012-07-01

    This paper presents a methodology to assess the effective capacity factor of an offshore wind power plant (OWPP). The electric power losses in all the systems that make up the wind farm are considered: the offshore wind turbines (OWTs), the collector system (CS) and the transmission system (TS). Other relevant issues such as the wake effect and the unavailability of the systems that make up the windfarm are also taken into account. The formulation of the methodology is fully analytic, with no simulation procedures for the evaluation of the electric power losses. A novel proposal to assess the losses in long submarine three-core cross linked polyethylene (XLPE) cables is presented in detail. Due to its analytic structure, the methodology can be implemented either in algorithmic form or in a spreadsheet, enabling to evaluate OWPPs electric topologies in an agile way. It is aimed at engineering researchers and project planning engineers involved in the offshore wind industry. (orig.)

  2. Environmental impact assessment: chemical explosive fracturing project, Petroleum Technology Corporation, Leslie, Letcher and Perry counties, Kentucky

    Energy Technology Data Exchange (ETDEWEB)

    Tonnessen, K.A.

    1977-05-19

    This review of the plans for a gas stimulation program by chemical explosive fracturing (CEF) in the Devonian shales of Letcher, Leslie and Perry counties, Kentucky also includes an assessment of the environmental consequences of the proposed project. This document was prepared at the request of the Nevada Operations Office of the Energy Research and Development Administration, and is intended to provide the information and data required for the preparation of an environmental assessment of the construction and testing program. This report was compiled from material provided by the Petroleum Technology Corporation of Redmond, Washington, Kentucky-West Virginia Gas Transmission Corporation of Prestonsburg, Kentucky and the State of Kentucky Bureau of Mines and Minerals during site visits in October, 1976.

  3. Central Colorado Assessment Project - Application of integrated geologic, geochemical, biologic, and mineral resource studies

    Science.gov (United States)

    Klein, T.L.; Church, S.E.; Caine, J.S.; Schmidt, T.S.; deWitt, E.H.

    2008-01-01

    Central Colorado is one of the fastest-growing regions in the Western United States. Population along the Front Range increased more than 30 percent between 1990 and 2000 (http://www.demographia.com/db-metro3newworld.htm) with some counties within the study area, such as Park County, experiencing greater than 100-percent growth (http://www.censusscope.org/us/s8/rank_popl_growth.html). This growth has caused tremendous demand for natural resources and has created challenging land-management issues related to the interface between wilderness and urban expansion. Management of this wilderness/urban interface will benefit from current digital geoscience information collected by the U.S. Geological Survey (USGS) Central Colorado Assessment Project that began in 2003. Approximately 20,800 square miles (53,800 km2) of land divided almost equally between the public and private sectors were part of the assessment.

  4. CARTEL: Annotated Bibliography of Bilingual Bicultural Materials No. 12. Cumulative Issue--1973.

    Science.gov (United States)

    Dissemination and Assessment Center for Bilingual Education, Austin, TX.

    Approximately 400 books, curriculum guides, journals, and educational resource materials published between 1967 and 1973 are listed in this annotated bibliography of bilingual bicultural materials on the Spanish-speaking, American Indians, French, Portuguese, Chinese, and Russians. This listing shares with bilingual bicultural project personnel…

  5. Students' Framing of a Reading Annotation Tool in the Context of Research-Based Teaching

    Science.gov (United States)

    Dahl, Jan Erik

    2016-01-01

    In the studied master's course, students participated both as research objects in a digital annotation experiment and as critical investigators of this technology in their semester projects. The students' role paralleled the researcher's role, opening an opportunity for researcher-student co-learning within what is often referred to as…

  6. Designing a Lexical Database for a Combined Use of Corpus Annotation and Dictionary Editing

    DEFF Research Database (Denmark)

    Kristoffersen, Jette Hedegaard; Troelsgård, Thomas; Langer, Gabriele

    2016-01-01

    In a combined corpus-dictionary project, you would need one lexical database that could serve as a shared “backbone” for both corpus annotation and dictionary editing, but it is not that easy to define a database structure that applies satisfactorily to both these purposes. In this paper, we will...

  7. The 2008 update of the Aspergillus nidulans genome annotation: A community effort

    NARCIS (Netherlands)

    Wortman, J.R.; Gilsenan, J.M.; Joardar, V.; Deegan, J.; Clutterbuck, J.; Andersen, M.R.; Archer, D.; Bencina, M.; Braus, G.; Coutinho, P.; von Döhren, H.; Doonan, J.; Driessen, A.J.M.; Durek, P.; Espeso, E.; Fekete, E.; Flipphi, M.; Estrada, C.G.; Geysens, S.; Goldman, G.; de Groot, P.W.J.; Hansen, K.; Harris, S.D.; Heinekamp, T.; Helmstaedt, K.; Henrissat, B.; Hofmann, G.; Homan, T.; Horio, T.; Horiuchi, H.; James, S.; Jones, M.; Karaffa, L.; Karányi, Z.; Kato, M.; Keller, N.; Kelly, D.E.; Kiel, J.A.K.W.; Kim, J.M.; van der Klei, I.J.; Klis, F.M.; Kovalchuk, A.; Kraševec, N.; Kubicek, C.P.; Liu, B.; MacCabe, A.; Meyer, V.; Mirabito, P.; Miskei, M.; Mos, M.; Mullins, J.; Nelson, D.R.; Nielsen, J.; Oakley, B.R.; Osmani, S.A.; Pakula, T.; Paszewski, A.; Paulsen, I.; Pilsyk, S.; Pócsi, I.; Punt, P.J.; Ram, A.F.J.; Ren, Q.; Robellet, X.; Robson, G.; Seiboth, B.; van Solingen, P.; Specht, T.; Sun, J.; Taheri-Talesh, N.; Takeshita, N.; Ussery, D.; vanKuyk, P.A.; Visser, H.; van de Vondervoort, P.J.I.; de Vries, R.P.; Walton, J.; Xiang, X.; Xiong, Y.; Zeng, A.P.; Brandt, B.W.; Cornell, M.J.; van den Hondel, C.A.M.J.J.; Visser, J.; Oliver, S.G.; Turner, G.

    2009-01-01

    The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional appli

  8. The 2008 update of the Aspergillus nidulans genome annotation: A community effort

    DEFF Research Database (Denmark)

    Wortman, Jennifer Russo; Gilsenan, Jane Mabey; Joardar, Vinita

    2009-01-01

    The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional ap...

  9. Discovering gene annotations in biomedical text databases

    Directory of Open Access Journals (Sweden)

    Ozsoyoglu Gultekin

    2008-03-01

    Full Text Available Abstract Background Genes and gene products are frequently annotated with Gene Ontology concepts based on the evidence provided in genomics articles. Manually locating and curating information about a genomic entity from the biomedical literature requires vast amounts of human effort. Hence, there is clearly a need forautomated computational tools to annotate the genes and gene products with Gene Ontology concepts by computationally capturing the related knowledge embedded in textual data. Results In this article, we present an automated genomic entity annotation system, GEANN, which extracts information about the characteristics of genes and gene products in article abstracts from PubMed, and translates the discoveredknowledge into Gene Ontology (GO concepts, a widely-used standardized vocabulary of genomic traits. GEANN utilizes textual "extraction patterns", and a semantic matching framework to locate phrases matching to a pattern and produce Gene Ontology annotations for genes and gene products. In our experiments, GEANN has reached to the precision level of 78% at therecall level of 61%. On a select set of Gene Ontology concepts, GEANN either outperforms or is comparable to two other automated annotation studies. Use of WordNet for semantic pattern matching improves the precision and recall by 24% and 15%, respectively, and the improvement due to semantic pattern matching becomes more apparent as the Gene Ontology terms become more general. Conclusion GEANN is useful for two distinct purposes: (i automating the annotation of genomic entities with Gene Ontology concepts, and (ii providing existing annotations with additional "evidence articles" from the literature. The use of textual extraction patterns that are constructed based on the existing annotations achieve high precision. The semantic pattern matching framework provides a more flexible pattern matching scheme with respect to "exactmatching" with the advantage of locating approximate

  10. GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.

    Science.gov (United States)

    Sangrador-Vegas, Amaia; Mitchell, Alex L; Chang, Hsin-Yu; Yong, Siew-Yit; Finn, Robert D

    2016-01-01

    The removal of annotation from biological databases is often perceived as an indicator of erroneous annotation. As a corollary, annotation stability is considered to be a measure of reliability. However, diverse data-driven events can affect the stability of annotations in both primary protein sequence databases and the protein family databases that are built upon the sequence databases and used to help annotate them. Here, we describe some of these events and their consequences for the InterPro database, and demonstrate that annotation removal or reassignment is not always linked to incorrect annotation by the curator. Database URL: http://www.ebi.ac.uk/interpro.

  11. Image retrieval and semiautomatic annotation scheme for large image databases on the Web

    Science.gov (United States)

    Zhu, Xingquan; Liu, Wenyin; Zhang, HongJiang; Wu, Lide

    2000-12-01

    Image annotation is used in traditional image database systems. However, without the help of human beings, it is very difficult to extract the semantic content of an image automatically. On the other hand, it is a tedious work to annotate images in large databases one by one manually. In this paper, we present a web based semi-automatic annotation and image retrieval scheme, which integrates image search and image annotation seamlessly and effectively. In this scheme, we use both low-level features and high-level semantics to measure similarity between images in an image database. A relevance feedback process at both levels is used to refine similarity assessment. The annotation process is activated when the user provides feedback on the retrieved images. With the help of the proposed similarity metrics and relevance feedback approach at these two levels, the system can find out those images that are relevant to the user's keyword or image query more efficiently. Experimental results have proved that our scheme is effective and efficient and can be used in large image databases for image annotation and retrieval.

  12. Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data

    Directory of Open Access Journals (Sweden)

    Merchant Sabeeha S

    2011-07-01

    Full Text Available Abstract Background Progress in genome sequencing is proceeding at an exponential pace, and several new algal genomes are becoming available every year. One of the challenges facing the community is the association of protein sequences encoded in the genomes with biological function. While most genome assembly projects generate annotations for predicted protein sequences, they are usually limited and integrate functional terms from a limited number of databases. Another challenge is the use of annotations to interpret large lists of 'interesting' genes generated by genome-scale datasets. Previously, these gene lists had to be analyzed across several independent biological databases, often on a gene-by-gene basis. In contrast, several annotation databases, such as DAVID, integrate data from multiple functional databases and reveal underlying biological themes of large gene lists. While several such databases have been constructed for animals, none is currently available for the study of algae. Due to renewed interest in algae as potential sources of biofuels and the emergence of multiple algal genome sequences, a significant need has arisen for such a database to process the growing compendiums of algal genomic data. Description The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein family databases. The current version provides annotation for the model alga Chlamydomonas reinhardtii, and in the future will include additional genomes. The site allows users to interpret large gene lists by identifying associated functional terms, and their enrichment. Additionally, expression data for several experimental conditions were compiled and analyzed to provide an expression-based enrichment search. A tool to search for functionally-related genes based on gene expression across these conditions is also provided. Other features include dynamic visualization of

  13. Improving pan-genome annotation using whole genome multiple alignment

    Directory of Open Access Journals (Sweden)

    Salzberg Steven L

    2011-06-01

    Full Text Available Abstract Background Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes is becoming commonplace due to advances in sequencing technology. Genome annotations can contain inconsistencies and errors that hinder comparative analysis even within a single species. Tools are needed to compare and improve annotation quality across sets of closely related genomes. Results We introduce a new tool, Mugsy-Annotator, that identifies orthologs and evaluates annotation quality in prokaryotic genomes using whole genome multiple alignment. Mugsy-Annotator identifies anomalies in annotated gene structures, including inconsistently located translation initiation sites and disrupted genes due to draft genome sequencing or pseudogenes. An evaluation of species pan-genomes using the tool indicates that such anomalies are common, especially at translation initiation sites. Mugsy-Annotator reports alternate annotations that improve consistency and are candidates for further review. Conclusions Whole genome multiple alignment can be used to efficiently identify orthologs and annotation problem areas in a bacterial pan-genome. Comparisons of annotated gene structures within a species may show more variation than is actually present in the genome, indicating errors in genome annotation. Our new tool Mugsy-Annotator assists re-annotation efforts by highlighting edits that improve annotation consistency.

  14. Spatial Analysis Based Health and Safety Risk Assessment for Linear Construction Projects

    Science.gov (United States)

    Atay, H.; Toz, G.

    2012-07-01

    This paper describes an on-going study that aims to develop a web-based spatial decision support system model for proactive health and safety management in linear construction projects. Currently, health and safety management is usually performed reactively instead of proactive management since hazard identification and risk assessment is mostly performed on paper based documents that are not effectively used at site. This leads to accidents and fatalities at construction sites. The proposed system automatically identifies the spatial risks according to the topographic and layout map of the site, project specification and health and safety regulations by means of spatial analysis. It enables the workers and management personnel to access the possible hazards and thematic risk map of any portion of the construction site for linear projects. Finally, the described approach provides the proposed mitigation measures for the identified hazards. The developed system is expected to raise awareness in H&S among workers and engineers, and increase participation of workers to health and safety management.

  15. SPATIAL ANALYSIS BASED HEALTH AND SAFETY RISK ASSESSMENT FOR LINEAR CONSTRUCTION PROJECTS

    Directory of Open Access Journals (Sweden)

    H. Atay

    2012-07-01

    Full Text Available This paper describes an on-going study that aims to develop a web-based spatial decision support system model for proactive health and safety management in linear construction projects. Currently, health and safety management is usually performed reactively instead of proactive management since hazard identification and risk assessment is mostly performed on paper based documents that are not effectively used at site. This leads to accidents and fatalities at construction sites. The proposed system automatically identifies the spatial risks according to the topographic and layout map of the site, project specification and health and safety regulations by means of spatial analysis. It enables the workers and management personnel to access the possible hazards and thematic risk map of any portion of the construction site for linear projects. Finally, the described approach provides the proposed mitigation measures for the identified hazards. The developed system is expected to raise awareness in H&S among workers and engineers, and increase participation of workers to health and safety management.

  16. Assessment of Carbon Emission Reduction for Buildings Projects in Malaysia-A Comparative Analysis

    Directory of Open Access Journals (Sweden)

    Klufallah Mustafa M. A.

    2014-01-01

    Full Text Available The Malaysian construction industry significantly contributes as an empowerment to its development vision of 2020 by reducing 40% of carbon emission. Moreover, this industry accounts as a threat to the environment, not only in terms of consumption of natural resources but also in emitting million tons of carbon emission annually. In fact, Malaysia is categorized the 30th in the world's ranking in carbon emission level. To mitigate the raise of carbon emission level from the buildings construction, several studies identified some of the effective carbon emission assessment tools for construction projects but it is lack of implementation in Malaysia. The green building index (GBI, Malaysian CIB Report has been introduced to assist the construction stakeholders in reducing the level of carbon emission and the impact of buildings on the environment. This paper presents an analysis of carbon emission from housing projects and office buildings in order to identify and quantify the main sources of carbon emission for each project and it proposes environmental friendly materials as replacement for conventional construction materials to achieve the implementation of sustainability in Malaysia.

  17. Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs

    Directory of Open Access Journals (Sweden)

    Cheung Warren A

    2012-09-01

    Full Text Available Abstract Background MEDLINE®/PubMed® indexes over 20 million biomedical articles, providing curated annotation of its contents using a controlled vocabulary known as Medical Subject Headings (MeSH. The MeSH vocabulary, developed over 50+ years, provides a broad coverage of topics across biomedical research. Distilling the essential biomedical themes for a topic of interest from the relevant literature is important to both understand the importance of related concepts and discover new relationships. Results We introduce a novel method for determining enriched curator-assigned MeSH annotations in a set of papers associated to a topic, such as a gene, an author or a disease. We generate MeSH Over-representation Profiles (MeSHOPs to quantitatively summarize the annotations in a form convenient for further computational analysis and visualization. Based on a hypergeometric distribution of assigned terms, MeSHOPs statistically account for the prevalence of the associated biomedical annotation while highlighting unusually prevalent terms based on a specified background. MeSHOPs can be visualized using word clouds, providing a succinct quantitative graphical representation of the relative importance of terms. Using the publication dates of articles, MeSHOPs track changing patterns of annotation over time. Since MeSHOPs are quantitative vectors, MeSHOPs can be compared using standard techniques such as hierarchical clustering. The reliability of MeSHOP annotations is assessed based on the capacity to re-derive the subset of the Gene Ontology annotations with equivalent MeSH terms. Conclusions MeSHOPs allows quantitative measurement of the degree of association between any entity and the annotated medical concepts, based directly on relevant primary literature. Comparison of MeSHOPs allows entities to be related based on shared medical themes in their literature. A web interface is provided for generating and visualizing MeSHOPs.

  18. MIPS: analysis and annotation of proteins from whole genomes.

    Science.gov (United States)

    Mewes, H W; Amid, C; Arnold, R; Frishman, D; Güldener, U; Mannhaupt, G; Münsterkötter, M; Pagel, P; Strack, N; Stümpflen, V; Warfsmann, J; Ruepp, A

    2004-01-01

    The Munich Information Center for Protein Sequences (MIPS-GSF), Neuherberg, Germany, provides protein sequence-related information based on whole-genome analysis. The main focus of the work is directed toward the systematic organization of sequence-related attributes as gathered by a variety of algorithms, primary information from experimental data together with information compiled from the scientific literature. MIPS maintains automatically generated and manually annotated genome-specific databases, develops systematic classification schemes for the functional annotation of protein sequences and provides tools for the comprehensive analysis of protein sequences. This report updates the information on the yeast genome (CYGD), the Neurospora crassa genome (MNCDB), the database of complete cDNAs (German Human Genome Project, NGFN), the database of mammalian protein-protein interactions (MPPI), the database of FASTA homologies (SIMAP), and the interface for the fast retrieval of protein-associated information (QUIPOS). The Arabidopsis thaliana database, the rice database, the plant EST databases (MATDB, MOsDB, SPUTNIK), as well as the databases for the comprehensive set of genomes (PEDANT genomes) are described elsewhere in the 2003 and 2004 NAR database issues, respectively. All databases described, and the detailed descriptions of our projects can be accessed through the MIPS web server (http://mips.gsf.de).

  19. Life cycle assessment for the "implicit" environmental impact of construction projects

    Institute of Scientific and Technical Information of China (English)

    Xiao-gen Shuai; Hui-qiang Li; Li Tang

    2009-01-01

    The paper has established an assessment system and a quantitative calculation method of the "implicit" environmental impact including environmental impact indicator, resources consumption indicator and energy consumption indicator. The quantitative calculation of the environmental impact indicator is based on the life cycle assessment system and the evaluation software BEES. The paper identifies normalization reference values and weights for 12 categories of the environmental impact. It also analyzes the environmental impact indicator in life cycle stages, raw materials, transportation, manufacturing, utilization, and end of life. A university refectory project is studied. The result has shown that human health, global warming and acidification are the first three environmental impacts in 12 categories. The environmental impact indicator per m2 of this project is 18.448×10-2 standard human equivalent weight. Moreover, 97.3 % of the total environmental impact occurs at the raw material stage, in which the most severe environmental impact is cancerous health effect; the global warming is the main impact at the transportation and manufacturing stages; the indoor air quality impact is at the usage stage.

  20. VREPAR projects: the use of virtual environments in psycho-neuro-physiological assessment and rehabilitation.

    Science.gov (United States)

    Riva, G; Bacchetta, M; Baruffi, M; Borgomainerio, E; Defrance, C; Gatti, F; Galimberti, C; Fontaneto, S; Marchi, S; Molinari, E; Nugues, P; Rinaldi, S; Rovetta, A; Ferretti, G S; Tonci, A; Wann, J; Vincelli, F

    1999-01-01

    Due, in large part, to the significant advances in PC hardware that have been made over the last 3 years, PC-based virtual environments are approaching reality. Virtual Reality Environments for Psychoneurophysiological Assessment and Rehabilitation (VREPAR) are two European Community funded projects (Telematics for health-HC 1053/HC 1055, http:// www.psicologia.net) that are trying to develop a PC-based virtual reality system (PC-VRS) for the medical market that can be marketed at a price that is accessible to its possible endusers (hospitals, universities, and research centres) and that would have the modular, connectability, and interoperability characteristics that the existing systems lack. In particular, the projects are developing three hardware/software modules for the application of the PCVRS in psycho-neuro-physiological assessment and rehabilitation. The chosen development areas are eating disorders (bulimia, anorexia, and obesity), movement disorders (Parkinson's disease and torsion dystonia) and stroke disorders (unilateral neglect and hemiparesis). This article describes the rationale of the modules and the preliminary results obtained.

  1. An Automated BIM Model to Conceptually Design, Analyze, Simulate, and Assess Sustainable Building Projects

    Directory of Open Access Journals (Sweden)

    Farzad Jalaei

    2014-01-01

    Full Text Available Quantifying the environmental impacts and simulating the energy consumption of building’s components at the conceptual design stage are very helpful for designers needing to make decisions related to the selection of the best design alternative that would lead to a more energy efficient building. Building Information Modeling (BIM offers designers the ability to assess different design alternatives at the conceptual stage of the project so that energy and life cycle assessment (LCA strategies and systems are attained. This paper proposes an automated model that links BIM, LCA, energy analysis, and lighting simulation tools with green building certification systems. The implementation is within developing plug-ins on BIM tool capable of measuring the environmental impacts (EI and embodied energy of building components. Using this method, designers will be provided with a new way to visualize and to identify the potential gain or loss of energy for the building as a whole and for each of its associated components. Furthermore, designers will be able to detect and evaluate the sustainability of the proposed buildings based on Leadership in Energy and Environmental Design (LEED rating system. An actual building project will be used to illustrate the workability of the proposed methodology.

  2. Environmental assessment for Kelley Hot Spring geothermal project: Kelley Hot Spring Agricultural Center

    Energy Technology Data Exchange (ETDEWEB)

    Neilson, J.A.

    1981-04-01

    The environmental impacts of an integrated swine production unit are analyzed together with necessary ancillary operations deriving its primary energy from a known geothermal reservoir in accordance with policies established by the National Energy Conservation Act. This environmental assessment covers 6 areas designated as potentially feasible project sites, using as the basic criteria for selection ground, surface and geothermal water supplies. The six areas, comprising +- 150 acres each, are within a 2 mile radius of Kelley Hot Springs, a known geothermal resource of many centuries standing, located 16 miles west of Alturas, the county seat of Modoc County, California. The project consists of the construction and operation of a 1360 sow confined pork production complex expandable to 5440 sows. The farrow to finish system for 1360 sows consists of 2 breeding barns, 2 gestation barns, 1 farrowing and 1 nursery barn, 3 growing and 3 finishing barns, a feed mill, a methane generator for waste disposal and water storage ponds. Supporting this are one geothermal well and 1 or 2 cold water wells, all occupying approximately 12 acres. Environmental reconnaissance involving geology, hydrology, soils, vegetation, fauna, air and water quality, socioeconomic, archaelogical and historical, and land use aspects were carefully carried out, impacts assessed and mitigations evaluated.

  3. Semi-Semantic Annotation: A guideline for the URDU.KON-TB treebank POS annotation

    Directory of Open Access Journals (Sweden)

    Qaiser ABBAS

    2016-12-01

    Full Text Available This work elaborates the semi-semantic part of speech annotation guidelines for the URDU.KON-TB treebank: an annotated corpus. A hierarchical annotation scheme was designed to label the part of speech and then applied on the corpus. This raw corpus was collected from the Urdu Wikipedia and the Jang newspaper and then annotated with the proposed semi-semantic part of speech labels. The corpus contains text of local & international news, social stories, sports, culture, finance, religion, traveling, etc. This exercise finally contributed a part of speech annotation to the URDU.KON-TB treebank. Twenty-two main part of speech categories are divided into subcategories, which conclude the morphological, and semantical information encoded in it. This article reports the annotation guidelines in major; however, it also briefs the development of the URDU.KON-TB treebank, which includes the raw corpus collection, designing & employment of annotation scheme and finally, its statistical evaluation and results. The guidelines presented as follows, will be useful for linguistic community to annotate the sentences not only for the national language Urdu but for the other indigenous languages like Punjab, Sindhi, Pashto, etc., as well.

  4. MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

    Directory of Open Access Journals (Sweden)

    Shu-Chuan Chen

    Full Text Available The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process.

  5. MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

    Science.gov (United States)

    Chen, Shu-Chuan; Ogata, Aaron

    2015-01-01

    The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process.

  6. Evaluation of impacts and mitigation assessments for the UMTRA Project: Gunnison and Durango pilot studies. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Beranich, S.J. [Southwest Environmental, Albuquerque, NM (United States)

    1994-08-24

    This report evaluates the impacts assessment and proposed mitigations provided in environmental documents concerning the US Department of Energy`s (DOE) Uranium Mill Tailings Remedial Action (UMTRA) Project. The projected impacts and proposed mitigations identified in UMTRA Project environmental documents were evaluated for two UMTRA Project sites. These sites are Gunnison and Durango, which are representative of currently active and inactive UMTRA Project sites, respectively. National Environmental Policy Act (NEPA) documentation was prepared for the remedial action at Durango and Gunnison as well as for the provision of an alternate water supply system at Gunnison. Additionally, environmental analysis was completed for mill site demolition Gunnison, and for a new road related to the Durango remedial action. The results in this report pertain only to the impact assessments prepared by the Regulatory Compliance staff as a part of the NEPA compliance requirements. Similarly, the mitigative measures documented are those that were identified during the NEPA process.

  7. Genome Annotation Transfer Utility (GATU: rapid annotation of viral genomes using a closely related reference genome

    Directory of Open Access Journals (Sweden)

    Upton Chris

    2006-06-01

    Full Text Available Abstract Background Since DNA sequencing has become easier and cheaper, an increasing number of closely related viral genomes have been sequenced. However, many of these have been deposited in GenBank without annotations, severely limiting their value to researchers. While maintaining comprehensive genomic databases for a set of virus families at the Viral Bioinformatics Resource Center http://www.biovirus.org and Viral Bioinformatics – Canada http://www.virology.ca, we found that researchers were unnecessarily spending time annotating viral genomes that were close relatives of already annotated viruses. We have therefore designed and implemented a novel tool, Genome Annotation Transfer Utility (GATU, to transfer annotations from a previously annotated reference genome to a new target genome, thereby greatly reducing this laborious task. Results GATU transfers annotations from a reference genome to a closely related target genome, while still giving the user final control over which annotations should be included. GATU also detects open reading frames present in the target but not the reference genome and provides the user with a variety of bioinformatics tools to quickly determine if these ORFs should also be included in the annotation. After this process is complete, GATU saves the newly annotated genome as a GenBank, EMBL or XML-format file. The software is coded in Java and runs on a variety of computer platforms. Its user-friendly Graphical User Interface is specifically designed for users trained in the biological sciences. Conclusion GATU greatly simplifies the initial stages of genome annotation by using a closely related genome as a reference. It is not intended to be a gene prediction tool or a "complete" annotation system, but we have found that it significantly reduces the time required for annotation of genes and mature peptides as well as helping to standardize gene names between related organisms by transferring reference genome

  8. PROJECT MANAGEMENT MATURITY: AN ASSESSMENT OF MATURITY FOR DEVELOPING PILOT PLANTS

    Directory of Open Access Journals (Sweden)

    H.K. Mittermaier

    2012-01-01

    Full Text Available

    ENGLISH ABSTRACT: Despite the current economic climate, the South African mining and engineering industry is experiencing a very promising future, with a large number of capital projects in the offing. It is inevitable that pilot plant development will form part of this future as a risk mitigation technique. This study found that, even though the terms ‘pilot plant’ and ‘project management maturity’ are familiar within the industry, no link between these two could be found in the literature. A number of maturity models exist; and one developed by PMSolutions was selected to perform an assessment of the current level of project management maturity within the South African mining and engineering industry pertaining to the development of pilot plants. The Delphi technique was used to determine the views of experts in the South African mining, mineral processing, petrochemical, nuclear, and mechanical sectors regarding this maturity. A significant difference was observed between the current level of maturity and the required level of maturity in all but one of the nine knowledge areas defined by the Project Management Institute. The two knowledge areas of project time and risk management showed significant differences between current and required maturity levels, and were identified as key areas for improvement.

    AFRIKAANSE OPSOMMING: Ten spyte van die huidige ekonomiese klimaat ondervind die Suid-Afrikaanse mynbou- en ingenieursbedryf ’n baie bemoedigende toekoms, met ’n groot aantal kapitaalprojekte in die vooruitsig. Ten einde risiko’s te verlaag, sal die ontwikkeling van loodsaanlegte noodwendig deel van hierdie toekoms uitmaak. Daar is gevind dat, alhoewel die terme ‘loodsaanleg’ en ‘projekbestuur volwassenheid’ in die nywerheid bekend is, geen skakeling van hierdie twee terme in die literatuur opgespoor kon word nie. ’n Aantal volwassenheid modelle bestaan; en een wat deur PMSolutions ontwikkel is, is gekies om

  9. Statements of work for FY 1996 to 2001 for the Hanford Low-Level Tank Waste Performance Assessment Project

    Energy Technology Data Exchange (ETDEWEB)

    Mann, F.M.

    1995-06-07

    The statements of work for each activity and task of the Hanford Low-Level Tank Waste Performance Assessment project are given for the fiscal years 1996 through 2001. The end product of this program is approval of a final performance assessment by the Department of Energy in the year 2000.

  10. Introduction to the Biomass Project: An Illustration of Evidence-Centered Assessment Design and Delivery Capability. CSE Report.

    Science.gov (United States)

    Steinberg, Linda S.; Mislevy, Robert J.; Almond, Russell G.; Baird, Andrew B.; Cahallan, Cara; Dibello, Louis V.; Senturk, Deniz; Yan, Duanli; Chernick, Howard; Kindfield, Ann C. H.

    This paper describes the design rationale for a prototype of an innovative assessment product, and the process that led to the design. The goals of the Biomass project were to demonstrate: (1) an assessment product designed to serve two new purposes in the transition from high school to college; and (2) the capability needed to produce this kind…

  11. Using an Evidential Reasoning Approach for Portfolio Assessments in a Project-Based Learning Engineering Design Course

    Science.gov (United States)

    Jaeger, Martin; Adair, Desmond

    2015-01-01

    The purpose of this study is to analyse the feasibility of an evidential reasoning (ER) method for portfolio assessments and comparison of the results found with those based on a traditional holistic judgement. An ER approach has been incorporated into portfolio assessment of an undergraduate engineering design course delivered as a project-based…

  12. Comparing On-Campus and Distance Education assessment in the form of Project Organized Problem Based Learning (POPBL)

    DEFF Research Database (Denmark)

    Helbo, Jan; Borch, Ole

    2006-01-01

    This paper describes the first experiences in on-line assessment in the POPBL distance education: Master of Industrial Information technology (MII) at Aalborg University, Denmark (AAU). The accomplished assessment of some projects and some courses has been changed from a normal on-campus seminar...

  13. Reworking Practice through an AfL Project: An Analysis of Teachers' Collaborative Engagement with New Assessment Guidelines

    Science.gov (United States)

    Hermansen, Hege; Nerland, Monika

    2014-01-01

    In recent years, the concept of Assessment for Learning (AfL) has travelled across countries, giving rise to a range of educational policy initiatives and school development projects. While researchers have focused on issues such as how formative assessment can support student learning and lead to more efficient classroom practices, less attention…

  14. The Choptank Watershed Wetland Conservation Effects Assessment Project: Monitoring the Delivery of Wetland Services across the Landscape

    Science.gov (United States)

    The Choptank Watershed Wetland Conservation Effects Assessment Project (CEAP) brings together an interdisciplinary group of experts and resources from multiple federal agencies and the University of Maryland to assess the ability of “natural,” restored, and prior-converted wetlands on cropland to im...

  15. The Choptank Watershed Wetland Conservation Effects Assessment Project: Monitoring the Effect of Wetland Conservation Practices on Water Quality

    Science.gov (United States)

    The Choptank Watershed Wetland Conservation Effects Assessment Project (CEAP) brings together an interdisciplinary group of experts and resources from multiple federal agencies and the University of Maryland to assess the ability of native, restored, and prior-converted wetlands on cropland to impro...

  16. Recommendations for the spatial assessment of air quality resulting from the FP6 EU project Air4EU

    NARCIS (Netherlands)

    Denby, B.; Larssen, S.; Builtjes, P.; Keuken, M.; Sokhi, R.; Moussiopoulos, N.; Douros, J.; Borrego, C.; Costa, A.M.; Pregger, T.

    2011-01-01

    Air4EU is an FP6 European project with the major aim of providing recommendations on methodologies for the spatial assessment of air quality on local, urban and regional scales. The emphasis is on methodologies that combine monitoring and modelling and on spatial assessment for regulatory purposes,

  17. Simulator fidelity and training effectiveness: a comprehensive bibliography with selected annotations

    Energy Technology Data Exchange (ETDEWEB)

    Rankin, W.L.; Bolton, P.A.; Shikiar, R.; Saari, L.M.

    1984-05-01

    This document contains a comprehensive bibliography on the topic of simulator fidelity and training effectiveness, prepared during the preliminary phases of work on an NRC-sponsored project on the Role of Nuclear Power Plant Simulators in Operator Licensing and Training. Section A of the document is an annotated bibliography consisting of articles and reports with relevance to the psychological aspects of simulator fidelity and the effectiveness of training simulators in a variety of settings, including military. The annotated items are drawn from a more comprehensive bibliography, presented in Section B, listing documents treating the role of simulators in operator training both in the nuclear industry and elsewhere.

  18. Conservation Science Fair Projects.

    Science.gov (United States)

    Soil Conservation Society of America, Ankeny, IA.

    Included are ideas, suggestions, and examples for selecting and designing conservation science projects. Over 70 possible conservation subject areas are presented with suggested projects. References are cited with each of these subject areas, and a separate list of annotated references is included. The references pertain to general subject…

  19. Protocol of the project pain & disasters: assessment of critical issues and possible solutions

    Directory of Open Access Journals (Sweden)

    Daniele Mipatrini

    2016-03-01

    Full Text Available Background: Disasters cause almost 100 thousand deaths and affect 200 million people every year. Operators working in disaster zones reported problems in importing medications, in particular pain killers and narcotics, in areas of disasters. The importance of ensuring access to painkillers, including major analgesics, is pinpointed by the World Health Organization which through its “Access to Controlled Medications Programme” provides normative guidance, policy analysis and training of healthcare workers on this issue. Nevertheless the little evidence available on the assessment and treatment of pain in disasters suggests that the management of pain in disaster zones may be affected by several factors mainly due to the availability of drugs, the skills of health personnel and cultural issues. Aim:The main aims of this project are: evaluating whether pain is correctly assessed and treated in disaster zones, assessing which are the main limitations to its treatment and producing suggestions and reccomandations to improve its treatment. Materials & Methods: In order to achieve our aims we will adopt a combined approach made by: A systematic review of the evidence will be conducted in the scientific databases Medline and Scopus. A review of grey literature concerning the issue on the Web pages of international organizations and NGOs working in the field of humanitarian aid. A survey among healthcare workers who took part to the international humanitarian actions. A survey among expert of the humanitarian field not necessary involved in projects on the field e.g. lawyer expert in international law, international organizations representatives working in the headquarters etc. A technical table with European experts in the field of pain treatment and/or disaster reaponse.

  20. Central Colorado Assessment Project (CCAP)-Geochemical data for rock, sediment, soil, and concentrate sample media

    Science.gov (United States)

    Granitto, Matthew; DeWitt, Ed H.; Klein, Terry L.

    2010-01-01

    This database was initiated, designed, and populated to collect and integrate geochemical data from central Colorado in order to facilitate geologic mapping, petrologic studies, mineral resource assessment, definition of geochemical baseline values and statistics, environmental impact assessment, and medical geology. The Microsoft Access database serves as a geochemical data warehouse in support of the Central Colorado Assessment Project (CCAP) and contains data tables describing historical and new quantitative and qualitative geochemical analyses determined by 70 analytical laboratory and field methods for 47,478 rock, sediment, soil, and heavy-mineral concentrate samples. Most samples were collected by U.S. Geological Survey (USGS) personnel and analyzed either in the analytical laboratories of the USGS or by contract with commercial analytical laboratories. These data represent analyses of samples collected as part of various USGS programs and projects. In addition, geochemical data from 7,470 sediment and soil samples collected and analyzed under the Atomic Energy Commission National Uranium Resource Evaluation (NURE) Hydrogeochemical and Stream Sediment Reconnaissance (HSSR) program (henceforth called NURE) have been included in this database. In addition to data from 2,377 samples collected and analyzed under CCAP, this dataset includes archived geochemical data originally entered into the in-house Rock Analysis Storage System (RASS) database (used by the USGS from the mid-1960s through the late 1980s) and the in-house PLUTO database (used by the USGS from the mid-1970s through the mid-1990s). All of these data are maintained in the Oracle-based National Geochemical Database (NGDB). Retrievals from the NGDB and from the NURE database were used to generate most of this dataset. In addition, USGS data that have been excluded previously from the NGDB because the data predate earliest USGS geochemical databases, or were once excluded for programmatic reasons