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Sample records for angioid streaks

  1. MULTIMODAL IMAGING OF ANGIOID STREAKS ASSOCIATED WITH TURNER SYNDROME.

    Science.gov (United States)

    Chiu, Bing Q; Tsui, Edmund; Hussnain, Syed Amal; Barbazetto, Irene A; Smith, R Theodore

    2018-02-13

    To report multimodal imaging in a novel case of angioid streaks in a patient with Turner syndrome with 10-year follow-up. Case report of a patient with Turner syndrome and angioid streaks followed at Bellevue Hospital Eye Clinic from 2007 to 2017. Fundus photography, fluorescein angiography, and optical coherence tomography angiography were obtained. Angioid streaks with choroidal neovascularization were noted in this patient with Turner syndrome without other systemic conditions previously correlated with angioid streaks. We report a case of angioid streaks with choroidal neovascularization in a patient with Turner syndrome. We demonstrate that angioid streaks, previously associated with pseudoxanthoma elasticum, Ehlers-Danlos syndrome, Paget disease of bone, and hemoglobinopathies, may also be associated with Turner syndrome, and may continue to develop choroidal neovascularization, suggesting the need for careful ophthalmic examination in these patients.

  2. Intravitreal bevacizumab (Avastin in choroidal neovascular membrane in angioid streaks

    Directory of Open Access Journals (Sweden)

    Sachdev Nishant

    2007-01-01

    Full Text Available Angioid streaks are crack-like dehiscences in the Bruch′s membrane, which predispose to the development of a choroidal neovascular membrane (CNVM that carries a poor visual outcome. We report successful treatment in a 25-year-old woman with bilateral angioid streaks and subfoveal CNVM in the left eye who received two doses of intravitreal bevacizumab (1.25 mg injections six weeks apart, resulting in rapid regression of the CNVM.

  3. Angioid streaks, clinical course, complications, and current therapeutic management

    Directory of Open Access Journals (Sweden)

    Ilias Georgalas

    2008-12-01

    Full Text Available Ilias Georgalas1, Dimitris Papaconstantinou2, Chrysanthi Koutsandrea2, George Kalantzis2, Dimitris Karagiannis2, Gerasimos Georgopoulos2, Ioannis Ladas21Department of Ophthalmology, “G. Gennimatas” Hospital of Athens, NHS, Athens, Greece; 2Department of Ophthalmology, “G. Gennimatas” Hospital of Athens, University of Athens, Athens, GreeceAbstract: Angioid streaks are visible irregular crack-like dehiscences in Bruch’s membrane that are associated with atrophic degeneration of the overlying retinal pigmented epithelium. Angioid streaks may be associated with pseudoxanthoma elasticum, Paget’s disease, sickle-cell anemia, acromegaly, Ehlers–Danlos syndrome, and diabetes mellitus, but also appear in patients without any systemic disease. Patients with angioid streaks are generally asymptomatic, unless the lesions extend towards the foveola or develop complications such as traumatic Bruch’s membrane rupture or macular choroidal neovascularization (CNV. The visual prognosis in patients with CNV secondary to angioid streaks if untreated, is poor and most treatment modalities, until recently, have failed to limit the devastating impact of CNV in central vision. However, it is likely that treatment with antivascular endothelial growth factor, especially in treatment-naive eyes to yield favorable results in the future and this has to be investigated in future studies.Keywords: angioid streaks, pseudoxanthoma elasticum, choroidal neovascularization

  4. Silent polypoidal choroidal vasculopathy in a patient with angioid streaks

    Directory of Open Access Journals (Sweden)

    Zafer Cebeci

    2016-06-01

    Full Text Available ABSTRACT We present a case of silent polypoidal choroidal vasculopathy (PCV in a patient with angioid streaks. PCV was detected during a routine ophthalmic examination and confirmed by fluorescein angiography, indocyanine green angiography, and optical coherence tomography. After 2 years of follow-up, the PCV remained silent without any complications. We report this rare coexistence and review literature on this topic.

  5. [The results of intravitreal bevacizumab in subretinal neovascularisation in angioid streaks].

    Science.gov (United States)

    Brănişteanu, D; Moraru, Andreea

    2014-01-01

    To assess the anatomical and functional results after intravitreal bevacizumab administration in choroidal neovascularization (CNV) due to angioid streaks; To assess the safety and results stability; Prospective, nonrandomized, interventional case study on choroidal neovascularization due to angioid streaks treated with intravitreal bevacizumab (AVASTIN). Intravitreal injection was repeated, if needed, at 4-6 weeks until leakage stopped. In all cases fluorescein angiograms and Spectral 3D OCTs were performed. Visual acuity was measured with ETDRS optotype. Cases were followed-up at least 6 months. Statistical analysis was performed using ANOVA and Wilcoxon tests. 8 cases with CNV associated to angioid streaks were evaluated between January 2007 and January 2013. Mean age of patients in the study was 52,36 +/- 4,33 years (ranging 42-64 years). The mean number of intravitreal injections was 4.64 +/- 0,42 (ranging between 3-8 injections). Mean visual acuity improved significantly in all cases after 3 intravitreal injections with a gain of more than 15 letters in 6 out of 8 cases (75%). OCT confirmed reduced depth of lesion and also a reduced lesion volume after treatment. No major local or systemic side-effects were noted. At 6 months follow-up the CNV reoccurred in 5 out of 8 cases (62.5%) requiring additional treatment. 3 out of 8 cases finally lost more than 5 letters due to subretinal fibrosis. These results confirm the efficacy and safety of intravitreal bevacizumab in controlling the CNV due to angioid streaks. High recurrence rate and quick lesion progression to subretinal fibrosis might be responsible for long-term poor functional results in this type of CNVs. More cases are needed for validation.

  6. Dark Slope Streaks

    Science.gov (United States)

    2004-01-01

    13 March 2004 Martian slope streaks occur in the regions most heavily mantled by fine, dry dust, particularly Tharsis, Arabia, and the knobby areas between Amazonis and Cerberus. This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows some examples of dark slope streaks off of buttes, mesas, and massifs in a dust-mantled crater in central Arabia Terra. New slope streaks form from time to time in the modern martian environment; the streaks in this image probably formed within the past decade. To create them, dust slid or avalanched down the slopes in an almost liquid-like manner. The image is located near 6.8oN, 321.7oW. The picture covers an area 3 km (1.9 mi) across. Sunlight illuminates the scene from the lower left.

  7. Wind Streak and Crater

    Science.gov (United States)

    2004-01-01

    23 February 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a wind streak developed in the lee of a meteor impact crater in western Daedalia Planum. The dominant winds responsible for the streak blew from the bottom/lower right (southeast). The image is located near 9.9oS, 144.9oW. Sunlight illuminates the scene from the lower left; the picture covers an area 3 km (1.9 mi) wide.

  8. Streaking tremor in Cascadia

    Science.gov (United States)

    Vidale, J. E.; Ghosh, A.; Sweet, J. R.; Creager, K. C.; Wech, A.; Houston, H.

    2009-12-01

    Details of tremor deep in subduction zones is damnably difficult to glimpse because of the lack of crisp initial arrivals, low waveform coherence, uncertain focal mechanisms, and the probability of simultaneous activity across extended regions. Yet such details hold out the best hope to illuminate the unknown mechanisms underlying episodic tremor and slip. Attacking this problem with brute force, we pointed a small, very dense seismic array down at the migration path of a good-sized episodic tremor and slip (ETS) event. In detail, it was an 84-element, 1300-m-aperture temporary seismic array in northern Washington, and the migration path of the May 2008 ETS event was 30-40 km directly underneath. Our beamforming technique tracked the time, incident angle, and azimuth of tremor radiation in unprecedented detail. We located the tremor by assuming it occurs on the subduction interface, estimated relative tremor moment released by each detected tremor window, and mapped it on the interface [Ghosh et al., GRL, 2009]. Fortunately for our ability to image it, the tremor generally appears to emanate from small regions, and we were surprised by how steadily the regions migrated with time. For the first time in Cascadia, we found convergence-parallel transient streaks of tremor migrating at velocities of several tens of km/hr, with movement in both up- and down-dip directions. Similar patterns have been seen in Japan [Shelly, G3, 2007]. This is in contrast to the long-term along-strike marching of tremor at 10 km/day. These streaks tend to propagate steadily and often repeat the same track on the interface multiple times. They light up persistent moment patches on the interface by a combination of increased amplitude and longer residence time within the patches. The up- and down-dip migration dominates the 2 days of tremor most clearly imaged by our array. The tendency of the streaks to fill in bands is the subject of the presentation of Ghosh et al. here. The physical

  9. Triton's streaks as windblown dust

    Science.gov (United States)

    Sagan, Carl; Chyba, Christopher

    1990-01-01

    Explanations for the surface streaks observed by Voyager 2 on Triton's southern hemisphere are discussed. It is shown that, despite Triton's tenuous atmosphere, low-cohesion dust trains with diameters of about 5 micron or less may be carried into suspension by aeolian surface shear stress, given expected geostrophic wind speeds of about 10 m/s. For geyser-like erupting dust plumes, it is shown that dust-settling time scales and expected wind velocities can produce streaks with length scales in good agreement with those of the streaks. Thus, both geyserlike eruptions or direct lifting by surface winds appear to be viable mechanisms for the origin of the streaks.

  10. Crater with Streak

    Science.gov (United States)

    2004-01-01

    6 November 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a small meteor impact crater (approximately the size of the famous Meteor Crater in northern Arizona) with a bright wind streak on its west (left) side. Generally, winds blowing from the east (right) have stripped away bright dust everywhere but in the lee of the crater. These landforms are located in eastern Kasei Valles near 25.1oN, 60.8oW. The picture covers an area about 3 km (1.9 mi) wide. Sunlight illuminates the scene from the left/lower left.

  11. Streaking into Middle School Science: The Dell Streak Pilot Project

    Science.gov (United States)

    Austin, Susan Eudy

    2012-01-01

    A case study is conducted implementing the Dell Streak seven-inch android device into eighth grade science classes of one teacher in a rural middle school in the Piedmont region of North Carolina. The purpose of the study is to determine if the use of the Dell Streaks would increase student achievement on standardized subject testing, if the…

  12. Light and Dark Slope Streaks

    Science.gov (United States)

    2004-01-01

    21 July 2004 Dark slope streaks are a common feature on slopes thickly-mantled by dust, especially in the Tharsis, Arabia, and western Amazonis regions of Mars. Less common are light-toned slope streaks, which often occur in the same area as dark streaks. They are most common in Arabia Terra, and some are shown in this Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image. Slope streaks are probably the result of sudden avalanches of extremely dry dust. The behavior of the avalanching dust is somewhat fluid-like, and new streaks have been observed to form over intervals of a few months to a Mars year. This image is located near 13.4oN, 340.3oW, and covers an area about 3 km (1.9 mi) wide. Sunlight illuminates the scene from the lower left.

  13. Electron accelerating unit for streak image tubes

    Indian Academy of Sciences (India)

    Keywords. High-speed photography; streak camera; Monte Carlo; electro-optical devices. 1. Introduction. Streak cameras are among the most valuable instruments for recording ultrafast phenomena in laser-driven inertial confinement fusion (ICF) experiments, and streak image tubes (SITs) are a core part of streak cameras.

  14. Streaking into middle school science: The Dell Streak pilot project

    Science.gov (United States)

    Austin, Susan Eudy

    A case study is conducted implementing the Dell Streak seven-inch android device into eighth grade science classes of one teacher in a rural middle school in the Piedmont region of North Carolina. The purpose of the study is to determine if the use of the Dell Streaks would increase student achievement on standardized subject testing, if the Streak could be used as an effective instructional tool, and if it could be considered an effective instructional resource for reviewing and preparing for the science assessments. A mixed method research design was used for the study to analyze both quantitative and qualitative results to determine if the Dell Streaks' utilization could achieve the following: 1. instructional strategies would change, 2. it would be an effective instructional tool, and 3. a comparison of the students' test scores and benchmark assessments' scores would provide statistically significant difference. Through the use of an ANOVA it was determined a statistically significant difference had occurred. A Post Hoc analysis was conducted to identify where the difference occurred. Finally a T-test determined was there was no statistically significance difference between the mean End-of-Grade tests and four quarterly benchmark scores of the control and the experimental groups. Qualitative research methods were used to gather results to determine if the Streaks were an effective instructional tool. Classroom observations identified that the teacher's teaching styles and new instructional strategies were implemented throughout the pilot project. Students had an opportunity to complete a questionnaire three times during the pilot project. Results revealed what the students liked about using the devices and the challenges they were facing. The teacher completed a reflective questionnaire throughout the pilot project and offered valuable reflections about the use of the devices in an educational setting. The reflection data supporting the case study was drawn

  15. Streak cameras and their applications

    International Nuclear Information System (INIS)

    Bernet, J.M.; Imhoff, C.

    1987-01-01

    Over the last several years, development of various measurement techniques in the nanosecond and pico-second range has led to increased reliance on streak cameras. This paper will present the main electronic and optoelectronic performances of the Thomson-CSF TSN 506 cameras and their associated devices used to build an automatic image acquisition and processing system (NORMA). A brief survey of the diversity and the spread of the use of high speed electronic cinematography will be illustrated by a few typical applications [fr

  16. Multislit streak photography for plasma dynamics studies

    International Nuclear Information System (INIS)

    Tou, T.Y.; Lee, S.

    1988-01-01

    A microscope slide with several transparent slits installed in a streak camera is used to record time-resolved two-dimensional information when a curved luminous plasma sheath traverses these slits. Applying this method to the plasma focus experiment, the axial run-down trajectory and the shapes of the plasma sheath at various moments can be obtained from a single streak photograph

  17. Ultra fast x-ray streak camera

    International Nuclear Information System (INIS)

    Coleman, L.W.; McConaghy, C.F.

    1975-01-01

    A unique ultrafast x-ray sensitive streak camera, with a time resolution of 50psec, has been built and operated. A 100A thick gold photocathode on a beryllium vacuum window is used in a modified commerical image converter tube. The X-ray streak camera has been used in experiments to observe time resolved emission from laser-produced plasmas. (author)

  18. Nonlinear streak computation using boundary region equations

    Energy Technology Data Exchange (ETDEWEB)

    Martin, J A; Martel, C, E-mail: juanangel.martin@upm.es, E-mail: carlos.martel@upm.es [Depto. de Fundamentos Matematicos, E.T.S.I Aeronauticos, Universidad Politecnica de Madrid, Plaza Cardenal Cisneros 3, 28040 Madrid (Spain)

    2012-08-01

    The boundary region equations (BREs) are applied for the simulation of the nonlinear evolution of a spanwise periodic array of streaks in a flat plate boundary layer. The well-known BRE formulation is obtained from the complete Navier-Stokes equations in the high Reynolds number limit, and provides the correct asymptotic description of three-dimensional boundary layer streaks. In this paper, a fast and robust streamwise marching scheme is introduced to perform their numerical integration. Typical streak computations present in the literature correspond to linear streaks or to small-amplitude nonlinear streaks computed using direct numerical simulation (DNS) or the nonlinear parabolized stability equations (PSEs). We use the BREs to numerically compute high-amplitude streaks, a method which requires much lower computational effort than DNS and does not have the consistency and convergence problems of the PSE. It is found that the flow configuration changes substantially as the amplitude of the streaks grows and the nonlinear effects come into play. The transversal motion (in the wall normal-streamwise plane) becomes more important and strongly distorts the streamwise velocity profiles, which end up being quite different from those of the linear case. We analyze in detail the resulting flow patterns for the nonlinearly saturated streaks and compare them with available experimental results. (paper)

  19. Streak artifacts in dynamic CT

    International Nuclear Information System (INIS)

    Partanen, K.; Kormano, M.

    1984-01-01

    Experiments with a body phantom during dynamic CT scanning with the Somatom 2 CT scanner indicate that the periodic streak artifacts seen on the anterior part of the liver in patients are caused by peristalsis of the stomach and resulting motion of the air fluid level. Therefore, the attenuation values of the anterior portion of the liver artifactually oscillate around the baseline value during the dynamic series of scans. This artifact is produced by a change in the position of the stomach air fluid level and is dependent on the direction of tube rotation. The mean of the artifactually oscillating attenuation readings is close to the mean density but usually useless in dynamic CT because the attenuation values change so rapidly in the dynamic phase that averaging measurements also will cause errors. (Auth.)

  20. Bright Streaks and Dark Fans

    Science.gov (United States)

    2007-01-01

    The south polar region of Mars is covered every year by a layer of carbon dioxide ice. In a region called the 'cryptic terrain,' the ice is translucent and sunlight can penetrate through the ice to warm the surface below. The ice layer sublimates (evaporates) from the bottom. The dark fans of dust seen in this image come from the surface below the layer of ice, carried to the top by gas venting from below. The translucent ice is 'visible' by virtue of the effect it has on the tone of the surface below, which would otherwise have the same color and reflectivity as the fans. Bright streaks in this image are fresh frost. The CRISM team has identified the composition of these streaks to be carbon dioxide. Observation Geometry Image PSP_003113_0940 was taken by the High Resolution Imaging Science Experiment (HiRISE) camera onboard the Mars Reconnaissance Orbiter spacecraft on 26-Mar-2007. The complete image is centered at -85.8 degrees latitude, 106.0 degrees East longitude. The range to the target site was 244.9 km (153.0 miles). At this distance the image scale is 49.0 cm/pixel (with 2 x 2 binning) so objects 147 cm across are resolved. The image shown here has been map-projected to 50 cm/pixel . The image was taken at a local Mars time of 06:20 PM and the scene is illuminated from the west with a solar incidence angle of 79 degrees, thus the sun was about 11 degrees above the horizon. At a solar longitude of 207.6 degrees, the season on Mars is Northern Autumn.

  1. Dynamic measurements of a simplified streak device

    International Nuclear Information System (INIS)

    Babushkin, A.V.; Postovalov, V.E.; Schelev, M.Y.; Jaeger, E.; Rempel, C.

    1988-01-01

    Described are the comparative testing of two types of electron-optical recording instruments, namely, TDS simplified streak device and anglo-soviet Imacon 500 picosecond streak camera fitted with PV-001 tube. The Imacon 500 streak camera was matched with a SIT vidicon readout system. Temporal resolution, dynamic range and input sensitivity were estimated for the same recording conditions. It is shown that for 6 ps laser probe pulses the TDS dynamic sensitivity at 530 nm input radiation is only four times less comparative to the commercial Imacon 500 system, while both systems have almost the same dynamic range

  2. Streak camera recording of interferometer fringes

    International Nuclear Information System (INIS)

    Parker, N.L.; Chau, H.H.

    1977-01-01

    The use of an electronic high-speed camera in the streaking mode to record interference fringe motion from a velocity interferometer is discussed. Advantages of this method over the photomultiplier tube-oscilloscope approach are delineated. Performance testing and data for the electronic streak camera are discussed. The velocity profile of a mylar flyer accelerated by an electrically exploded bridge, and the jump-off velocity of metal targets struck by these mylar flyers are measured in the camera tests. Advantages of the streak camera include portability, low cost, ease of operation and maintenance, simplified interferometer optics, and rapid data analysis

  3. Compact Optical Technique for Streak Camera Calibration

    International Nuclear Information System (INIS)

    Curt Allen; Terence Davies; Frans Janson; Ronald Justin; Bruce Marshall; Oliver Sweningsen; Perry Bell; Roger Griffith; Karla Hagans; Richard Lerche

    2004-01-01

    The National Ignition Facility is under construction at the Lawrence Livermore National Laboratory for the U.S. Department of Energy Stockpile Stewardship Program. Optical streak cameras are an integral part of the experimental diagnostics instrumentation. To accurately reduce data from the streak cameras a temporal calibration is required. This article describes a technique for generating trains of precisely timed short-duration optical pulses that are suitable for temporal calibrations

  4. Soft x-ray streak cameras

    International Nuclear Information System (INIS)

    Stradling, G.L.

    1988-01-01

    This paper is a discussion of the development and of the current state of the art in picosecond soft x-ray streak camera technology. Accomplishments from a number of institutions are discussed. X-ray streak cameras vary from standard visible streak camera designs in the use of an x-ray transmitting window and an x-ray sensitive photocathode. The spectral sensitivity range of these instruments includes portions of the near UV and extends from the subkilovolt x- ray region to several tens of kilovolts. Attendant challenges encountered in the design and use of x-ray streak cameras include the accommodation of high-voltage and vacuum requirements, as well as manipulation of a photocathode structure which is often fragile. The x-ray transmitting window is generally too fragile to withstand atmospheric pressure, necessitating active vacuum pumping and a vacuum line of sight to the x-ray signal source. Because of the difficulty of manipulating x-ray beams with conventional optics, as is done with visible light, the size of the photocathode sensing area, access to the front of the tube, the ability to insert the streak tube into a vacuum chamber and the capability to trigger the sweep with very short internal delay times are issues uniquely relevant to x-ray streak camera use. The physics of electron imaging may place more stringent limitations on the temporal and spatial resolution obtainable with x-ray photocathodes than with the visible counterpart. Other issues which are common to the entire streak camera community also concern the x-ray streak camera users and manufacturers

  5. Compact Optical Technique for Streak Camera Calibration

    International Nuclear Information System (INIS)

    Bell, P; Griffith, R; Hagans, K; Lerche, R; Allen, C; Davies, T; Janson, F; Justin, R; Marshall, B; Sweningsen, O

    2004-01-01

    The National Ignition Facility (NIF) is under construction at the Lawrence Livermore National Laboratory (LLNL) for the U.S. Department of Energy Stockpile Stewardship Program. Optical streak cameras are an integral part of the experimental diagnostics instrumentation. To accurately reduce data from the streak cameras a temporal calibration is required. This article describes a technique for generating trains of precisely timed short-duration optical pulses1 (optical comb generators) that are suitable for temporal calibrations. These optical comb generators (Figure 1) are used with the LLNL optical streak cameras. They are small, portable light sources that produce a series of temporally short, uniformly spaced, optical pulses. Comb generators have been produced with 0.1, 0.5, 1, 3, 6, and 10-GHz pulse trains of 780-nm wavelength light with individual pulse durations of ∼25-ps FWHM. Signal output is via a fiber-optic connector. Signal is transported from comb generator to streak camera through multi-mode, graded-index optical fibers. At the NIF, ultra-fast streak-cameras are used by the Laser Fusion Program experimentalists to record fast transient optical signals. Their temporal resolution is unmatched by any other transient recorder. Their ability to spatially discriminate an image along the input slit allows them to function as a one-dimensional image recorder, time-resolved spectrometer, or multichannel transient recorder. Depending on the choice of photocathode, they can be made sensitive to photon energies from 1.1 eV to 30 keV and beyond. Comb generators perform two important functions for LLNL streak-camera users. First, comb generators are used as a precision time-mark generator for calibrating streak camera sweep rates. Accuracy is achieved by averaging many streak camera images of comb generator signals. Time-base calibrations with portable comb generators are easily done in both the calibration laboratory and in situ. Second, comb signals are applied

  6. Dark Streaks Over-riding Inactive Dunes

    Science.gov (United States)

    2000-01-01

    Not all sand dunes on Mars are active in the modern martian environment. This example from the Lycus Sulci (Olympus Mons'aureole') region shows a case where small windblown dunes at the base of a slope have been over-ridden by more recent dark streaks (arrows). The dark streaks are most likely caused by what geologists call mass wasting or mass movement (landslides and avalanches are mass movements). Dark slope streaks such as these are common in dustier regions of Mars, and they appear to result from movement of extremely dry dust or sand in an almost fluidlike manner down a slope. This movement disrupts the bright dust coating on the surface and thus appears darker than the surrounding terrain.In this case, the dark slope streaks have moved up and over the dunes at the bottom of the slope, indicating that the process that moves sediment down the slope is more active (that is, it has occurred more recently and hence is more likely to occur) in the modern environment than is the movement of dunes and ripples at this location on Mars. The dunes, in fact, are probably mantled by dust. This October 1997 Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) picture is illuminated from the left and located near 31.6oN, 134.0oW.

  7. The LLL compact 10-ps streak camera

    International Nuclear Information System (INIS)

    Thomas, S.W.; Houghton, J.W.; Tripp, G.R.; Coleman, L.W.

    1975-01-01

    The 10-ps streak camera has been redesigned to simplify its operation, reduce manufacturing costs, and improve its appearance. The electronics have been simplified, a film indexer added, and a contacted slit has been evaluated. Data support a 10-ps resolution. (author)

  8. Pea Streak Virus Recorded in Europe

    Czech Academy of Sciences Publication Activity Database

    Sarkisova, Tatiana; Bečková, M.; Fránová, Jana; Petrzik, Karel

    2016-01-01

    Roč. 52, č. 3 (2016), s. 164-166 ISSN 1212-2580 R&D Projects: GA MZe QH71145 Institutional support: RVO:60077344 Keywords : Pea streak virus * alfalfa * carlavirus * partial sequence Subject RIV: EE - Microbiology, Virology Impact factor: 0.742, year: 2016

  9. Streaked Thomson Scattering on Laboratory Plasma Jets

    Science.gov (United States)

    Banasek, Jacob; Byvank, Tom; Rocco, Sophia; Kusse, Bruce; Hammer, David

    2017-10-01

    Streaked Thomson scattering measurements have been performed on plasma jets created from a 15 μm thick radial Al or Ti foil load on COBRA, a 1 MA pulsed power machine. The goal was to measure the electron temperatures inside the center of the plasma jet created by the radial foil. The laser used for these measurements had a maximum energy of 10 J at 526.5 nm in a 3 ns duration pulse. Early experiments showed using the full energy significantly heats the 5 ×1018 cm-3 jet by inverse bremsstrahlung radiation. Here we used a streak camera to record the scattered spectrum and measure the evolving electron temperature of this laser heated jet. Analysis of the streak camera image showed that the electron temperature of the Al jet was increased from about 25 eV to 80-100 eV within about 2 ns. The Ti jets showed even stronger interaction with the laser, being heated to over 150 eV, and showed some heating even when only 1 J of laser energy was used. Also, the ion-acoustic peaks in the scattered spectrum from the Ti jets were significantly narrower than those from Al jets. Initial results will also be presented with scattered spectra taken at two different times within a single experiment by splitting the probe beam. This research is supported by the NNSA Stewardship Sciences Academic Programs under DOE Cooperative Agreement DE-NA0001836.

  10. Dynamic range studies of the RCA streak tube in the LLL streak camera

    International Nuclear Information System (INIS)

    Thomas, S.W.; Phillips, G.E.

    1979-01-01

    As indicated by tests on several cameras, the dynamic range of the Lawrence Livermore Laboratory streak-camera system appears to be about two orders of magnitude greater than those reported for other systems for 10- to 200-ps pulses. The lack of a fine mesh grid in the RCA streak tube used in these cameras probably contributes to a lower system dynamic noise and therefore raises the dynamic range. A developmental tube with a mesh grid was tested and supports this conjecture. Order-of-magnitude variations in input slit width do not affect the spot size on the phosphor or the dynamic range of the RCA tube. (author)

  11. Sampling-image streak framing technique and its special streak image tube

    CERN Document Server

    Ji Lili; Lan Zhou Jun; Yang, Q L; Zhang, H; Niu, H

    2002-01-01

    We designed a special electrostatic focusing streak image tube (SIT) with large magnification, tiny temporal distortion and large dynamic range for the application of the technique of sampling-image streaking frame (SISF) for plasma diagnostics in ICF. A proof-of-principle experiment of the technique is performed with the SIT, together with a picosecond laser and image reconstruction software. Using the digital image-processing program, the result gives 16 frames with an exposure time of better than 6.3 ps.

  12. Compact optical technique for streak camera calibration

    International Nuclear Information System (INIS)

    Bell, Perry; Griffith, Roger; Hagans, Karla; Lerche, Richard; Allen, Curt; Davies, Terence; Janson, Frans; Justin, Ronald; Marshall, Bruce; Sweningsen, Oliver

    2004-01-01

    To produce accurate data from optical streak cameras requires accurate temporal calibration sources. We have reproduced an older technology for generating optical timing marks that had been lost due to component availability. Many improvements have been made which allow the modern units to service a much larger need. Optical calibrators are now available that produce optical pulse trains of 780 nm wavelength light at frequencies ranging from 0.1 to 10 GHz, with individual pulse widths of approximately 25 ps full width half maximum. Future plans include the development of single units that produce multiple frequencies to cover a wide temporal range, and that are fully controllable via an RS232 interface

  13. Compact optical technique for streak camera calibration

    Science.gov (United States)

    Bell, Perry; Griffith, Roger; Hagans, Karla; Lerche, Richard; Allen, Curt; Davies, Terence; Janson, Frans; Justin, Ronald; Marshall, Bruce; Sweningsen, Oliver

    2004-10-01

    To produce accurate data from optical streak cameras requires accurate temporal calibration sources. We have reproduced an older technology for generating optical timing marks that had been lost due to component availability. Many improvements have been made which allow the modern units to service a much larger need. Optical calibrators are now available that produce optical pulse trains of 780 nm wavelength light at frequencies ranging from 0.1 to 10 GHz, with individual pulse widths of approximately 25 ps full width half maximum. Future plans include the development of single units that produce multiple frequencies to cover a wide temporal range, and that are fully controllable via an RS232 interface.

  14. Approaches to diagnosis and detection of cassava brown streak ...

    African Journals Online (AJOL)

    Cassava brown streak disease (CBSD) has been a problem in the East African coastal cassava growing areas for more than 70 years. The disease is caused by successful infection with Cassava Brown Streak Virus (CBSV) (Family, Potyviridae: Genus, Ipomovirus). Diagnosis of CBSD has for long been primarily leaf ...

  15. traits and resistance to maize streak virus disease in kenya

    African Journals Online (AJOL)

    Maize Streak virus (MSV) disease is a major disease in many parts of Africa, and is the most important viral pathogen of maize in Kenya. A study was conducted in 2004 to evaluate the agronomic performance and maize streak virus (MSV) resistance of maize (Zea mays L.) three-way crosses developed in Kenya. Twenty ...

  16. Maize streak disease in Burundi highlands

    Directory of Open Access Journals (Sweden)

    Zeigler, RS.

    1985-01-01

    Full Text Available In Burundi, beginning in 1982 high incidence of maize streak disease (MSD was observed in high elevation (1850 m bottomland maize planted during the dry season. In 1983 high levels of MSD were observed in high elevation upland maize as well. MSD has not previously been a problem in highland maize in Burundi. Cicadulina spp. collected from MSD-affected fields were predominantly C. storeyi with C. mbila poorly represented. Ten percent of wild populations were active vectors, while 17 % were capable transmitting the virus. MSD-resistant material from UT A was tested at 830 m and 2050 m and found to be resistant at both sites, but poorly adapted to the high elevation environment. Increasing wheat culture in the highlands may explain the increasing importance of MSD.

  17. [Streak retinoscopy. Optical principles and practical recommendations].

    Science.gov (United States)

    Kommerell, G

    1993-07-01

    The optical principles of streak retinoscopy are demonstrated by diagrams and by optical models. The phenomena observed in the proband's pupil are being explained in two ways: In the first explanation, the image on the proband's retina and its movements are considered, or rather their projection into space; this explanation corresponding to the term "retinoscopy" is commonly used in English textbooks. In the second explanation, the limitations of the light bundle by the proband's and the observer's pupils are considered; hence the term skiascopy (sigma kappa iota alpha = shadow), commonly used in the German literature. The practical hints include retinoscopy through the phoropter, suggestions for the examination of children both with and without cycloplegia, the measurement of accommodation, the detection of opacities and irregularities in the optical media, and the analysis of visual field defects caused by optical anomalies, such as refraction scotomas.

  18. Time-resolved brightness measurements by streaking

    Science.gov (United States)

    Torrance, Joshua S.; Speirs, Rory W.; McCulloch, Andrew J.; Scholten, Robert E.

    2018-03-01

    Brightness is a key figure of merit for charged particle beams, and time-resolved brightness measurements can elucidate the processes involved in beam creation and manipulation. Here we report on a simple, robust, and widely applicable method for the measurement of beam brightness with temporal resolution by streaking one-dimensional pepperpots, and demonstrate the technique to characterize electron bunches produced from a cold-atom electron source. We demonstrate brightness measurements with 145 ps temporal resolution and a minimum resolvable emittance of 40 nm rad. This technique provides an efficient method of exploring source parameters and will prove useful for examining the efficacy of techniques to counter space-charge expansion, a critical hurdle to achieving single-shot imaging of atomic scale targets.

  19. AIP GHz modulation detection using a streak camera: Suitability of streak cameras in the AWAKE experiment

    CERN Document Server

    Rieger, K; Reimann, O; Muggli, P

    2017-01-01

    Using frequency mixing, a modulated light pulse of ns duration is created. We show that, with a ps-resolution streak camera that is usually used for single short pulse measurements, we can detect via an FFT detection approach up to 450 GHz modulation in a pulse in a single measurement. This work is performed in the context of the AWAKE plasma wakefield experiment where modulation frequencies in the range of 80–280 GHz are expected.

  20. Inducible resistance to maize streak virus.

    Science.gov (United States)

    Shepherd, Dionne N; Dugdale, Benjamin; Martin, Darren P; Varsani, Arvind; Lakay, Francisco M; Bezuidenhout, Marion E; Monjane, Adérito L; Thomson, Jennifer A; Dale, James; Rybicki, Edward P

    2014-01-01

    Maize streak virus (MSV), which causes maize streak disease (MSD), is the major viral pathogenic constraint on maize production in Africa. Type member of the Mastrevirus genus in the family Geminiviridae, MSV has a 2.7 kb, single-stranded circular DNA genome encoding a coat protein, movement protein, and the two replication-associated proteins Rep and RepA. While we have previously developed MSV-resistant transgenic maize lines constitutively expressing "dominant negative mutant" versions of the MSV Rep, the only transgenes we could use were those that caused no developmental defects during the regeneration of plants in tissue culture. A better transgene expression system would be an inducible one, where resistance-conferring transgenes are expressed only in MSV-infected cells. However, most known inducible transgene expression systems are hampered by background or "leaky" expression in the absence of the inducer. Here we describe an adaptation of the recently developed INPACT system to express MSV-derived resistance genes in cell culture. Split gene cassette constructs (SGCs) were developed containing three different transgenes in combination with three different promoter sequences. In each SGC, the transgene was split such that it would be translatable only in the presence of an infecting MSV's replication associated protein. We used a quantitative real-time PCR assay to show that one of these SGCs (pSPLITrepIII-Rb-Ubi) inducibly inhibits MSV replication as efficiently as does a constitutively expressed transgene that has previously proven effective in protecting transgenic maize from MSV. In addition, in our cell-culture based assay pSPLITrepIII-Rb-Ubi inhibited replication of diverse MSV strains, and even, albeit to a lesser extent, of a different mastrevirus species. The application of this new technology to MSV resistance in maize could allow a better, more acceptable product.

  1. Inducible resistance to maize streak virus.

    Directory of Open Access Journals (Sweden)

    Dionne N Shepherd

    Full Text Available Maize streak virus (MSV, which causes maize streak disease (MSD, is the major viral pathogenic constraint on maize production in Africa. Type member of the Mastrevirus genus in the family Geminiviridae, MSV has a 2.7 kb, single-stranded circular DNA genome encoding a coat protein, movement protein, and the two replication-associated proteins Rep and RepA. While we have previously developed MSV-resistant transgenic maize lines constitutively expressing "dominant negative mutant" versions of the MSV Rep, the only transgenes we could use were those that caused no developmental defects during the regeneration of plants in tissue culture. A better transgene expression system would be an inducible one, where resistance-conferring transgenes are expressed only in MSV-infected cells. However, most known inducible transgene expression systems are hampered by background or "leaky" expression in the absence of the inducer. Here we describe an adaptation of the recently developed INPACT system to express MSV-derived resistance genes in cell culture. Split gene cassette constructs (SGCs were developed containing three different transgenes in combination with three different promoter sequences. In each SGC, the transgene was split such that it would be translatable only in the presence of an infecting MSV's replication associated protein. We used a quantitative real-time PCR assay to show that one of these SGCs (pSPLITrepIII-Rb-Ubi inducibly inhibits MSV replication as efficiently as does a constitutively expressed transgene that has previously proven effective in protecting transgenic maize from MSV. In addition, in our cell-culture based assay pSPLITrepIII-Rb-Ubi inhibited replication of diverse MSV strains, and even, albeit to a lesser extent, of a different mastrevirus species. The application of this new technology to MSV resistance in maize could allow a better, more acceptable product.

  2. Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography

    Directory of Open Access Journals (Sweden)

    Markham Peter G

    2009-11-01

    Full Text Available Abstract Background Panicum streak virus (PanSV; Family Geminiviridae; Genus Mastrevirus is a close relative of Maize streak virus (MSV, the most serious viral threat to maize production in Africa. PanSV and MSV have the same leafhopper vector species, largely overlapping natural host ranges and similar geographical distributions across Africa and its associated Indian Ocean Islands. Unlike MSV, however, PanSV has no known economic relevance. Results Here we report on 16 new PanSV full genome sequences sampled throughout Africa and use these together with others in public databases to reveal that PanSV and MSV populations in general share very similar patterns of genetic exchange and geographically structured diversity. A potentially important difference between the species, however, is that the movement of MSV strains throughout Africa is apparently less constrained than that of PanSV strains. Interestingly the MSV-A strain which causes maize streak disease is apparently the most mobile of all the PanSV and MSV strains investigated. Conclusion We therefore hypothesize that the generally increased mobility of MSV relative to other closely related species such as PanSV, may have been an important evolutionary step in the eventual emergence of MSV-A as a serious agricultural pathogen. The GenBank accession numbers for the sequences reported in this paper are GQ415386-GQ415401

  3. Martian slope streaks as plausible indicators of transient water activity.

    Science.gov (United States)

    Bhardwaj, Anshuman; Sam, Lydia; Martín-Torres, F Javier; Zorzano, María-Paz; Fonseca, Ricardo M

    2017-08-01

    Slope streaks have been frequently observed in the equatorial, low thermal inertia and dusty regions of Mars. The reason behind their formation remains unclear with proposed hypotheses for both dry and wet mechanisms. Here, we report an up-to-date distribution and morphometric investigation of Martian slope streaks. We find: (i) a remarkable coexistence of the slope streak distribution with the regions on Mars with high abundances of water-equivalent hydrogen, chlorine, and iron; (ii) favourable thermodynamic conditions for transient deliquescence and brine development in the slope streak regions; (iii) a significant concurrence of slope streak distribution with the regions of enhanced atmospheric water vapour concentration, thus suggestive of a present-day regolith-atmosphere water cycle; and (iv) terrain preferences and flow patterns supporting a wet mechanism for slope streaks. These results suggest a strong local regolith-atmosphere water coupling in the slope streak regions that leads to the formation of these fluidised features. Our conclusions can have profound astrobiological, habitability, environmental, and planetary protection implications.

  4. Active Processes: Bright Streaks and Dark Fans

    Science.gov (United States)

    2007-01-01

    [figure removed for brevity, see original site] [figure removed for brevity, see original site] Figure 1Figure 2 In a region of the south pole known informally as 'Ithaca' numerous fans of dark frost form every spring. HiRISE collected a time lapse series of these images, starting at Ls = 185 and culminating at Ls = 294. 'Ls' is the way we measure time on Mars: at Ls = 180 the sun passes the equator on its way south; at Ls = 270 it reaches its maximum subsolar latitude and summer begins. In the earliest image (figure 1) fans are dark, but small narrow bright streaks can be detected. In the next image (figure 2), acquired at Ls = 187, just 106 hours later, dramatic differences are apparent. The dark fans are larger and the bright fans are more pronounced and easily detectable. The third image in the sequence shows no bright fans at all. We believe that the bright streaks are fine frost condensed from the gas exiting the vent. The conditions must be just right for the bright frost to condense. Observation Geometry Image PSP_002622_0945 was taken by the High Resolution Imaging Science Experiment (HiRISE) camera onboard the Mars Reconnaissance Orbiter spacecraft on 16-Feb-2007. The complete image is centered at -85.2 degrees latitude, 181.5 degrees East longitude. The range to the target site was 246.9 km (154.3 miles). At this distance the image scale is 49.4 cm/pixel (with 2 x 2 binning) so objects 148 cm across are resolved. The image shown here has been map-projected to 50 cm/pixel . The image was taken at a local Mars time of 05:46 PM and the scene is illuminated from the west with a solar incidence angle of 88 degrees, thus the sun was about 2 degrees above the horizon. At a solar longitude of 185.1 degrees, the season on Mars is Northern Autumn.

  5. Morphologic, Topographic, and Thermal Analysis of Slope Streaks on Mars

    Science.gov (United States)

    Aharonson, O.; Schorghofer, N.; Khatiwala, S.; Richardson, M. I.

    2002-12-01

    Surfaces containing features known as slope streaks are common on Mars in regions where thermal-inertia is low and steep slopes are frequent. We have recently compiled a catalog of slope streak images and identified previously unrecognized correlations with surface properties. Building on this work, we analyze data from Mars Orbiter Camera, from Mars Orbiter Laser Altimeter, and from the Thermal Emission Imaging System instrument on board Mars Odyssey, to constrain the physical properties and thermal conditions at the specific sites where slope streaks are forming. A number of proposed theories explaining the formation mechanism of slope streaks can be tested using new data, including an exciting possibility of the potential role of a water phase-transition.

  6. A Neutron Streak Camera Designed for ICF Fuel Ion Temperature

    Science.gov (United States)

    Chen, Jiabin; Liao, Hua; Chen, Ming

    2007-11-01

    A neutron streak camera was designed for inertial confinement fusion (ICF) fuel ion temperature diagnostic. It is made of a 1 cm thick x8 cm diam piece of 3% benzophenone quenched plastic scintillator with about a 190 ps FWHM and a streak tube (55ps time resolution) with large-area photocathode (φ30 mm) showed no slit. The electron beam from the photocathode is focused into a little spot (φ1mm). Then the spot is scanned directly and multiplied by an internal microchannel plate. This greatly improves the sensitivity of the tube. The neutron streak camera combines the advangtages of scintillation detector (with high neutron detection efficiency) and of streak camera (with fast time response). The whole detection system time resolution is 300ps and can record neutron time of flight signals from ICF implosion target with yields of 10^7 DT neutron per shot.

  7. Triggered streak and framing rotating-mirror cameras

    International Nuclear Information System (INIS)

    Huston, A.E.; Tabrar, A.

    1975-01-01

    A pulse motor has been developed which enables a mirror to be rotated to speeds in excess of 20,000 rpm with 10 -4 s. High-speed cameras of both streak and framing type have been assembled which incorporate this mirror drive, giving streak writing speeds up to 2,000ms -1 , and framing speeds up to 500,000 frames s -1 , in each case with the capability of triggering the camera from the event under investigation. (author)

  8. Small-size streak tube for imaging lidar

    Science.gov (United States)

    Tian, Jinshou; Hui, Dandan; Luo, Duan; Wang, Tao; Zhang, Jun; Chen, Shaorong; Jia, Hui

    2017-02-01

    Streak tube imaging lidar, as a novel flash lidar, due to its advantages of higher resolution for low contrast conditions, compact and rugged physical configurations, small image distortions owing to its scannerless design, and higher image update rates, has immense potential to provide 3D single-laser-pulse scannerless imaging, 3D multispectral imaging, 3D multispectral fluorescence imaging, and 3D polarimetry. In order to further reduce the size and enlarge the field of view (FOV) of the lidar system, we designed a super small-size, large photocathode area and meshless streak tube with spherical cathode and screen. With the aid of Computer Simulation Technology Software package (CST), a model of the streak tube was built, and its predominant performances were illustrated via tracking electron trajectories. Spatial resolution of the streak tube reaches 20lp/mm over the entire ∅28mm photocathode working area, and its temporal resolution is better than 30ps. Most importantly, the external dimensions of the streak tube are only ∅50mmx100mm. And several prototypes are already manufactured on the basis of the computer design.

  9. Orientation tuning of contrast masking caused by motion streaks.

    Science.gov (United States)

    Apthorp, Deborah; Cass, John; Alais, David

    2010-08-01

    We investigated whether the oriented trails of blur left by fast-moving dots (i.e., "motion streaks") effectively mask grating targets. Using a classic overlay masking paradigm, we varied mask contrast and target orientation to reveal underlying tuning. Fast-moving Gaussian blob arrays elevated thresholds for detection of static gratings, both monoptically and dichoptically. Monoptic masking at high mask (i.e., streak) contrasts is tuned for orientation and exhibits a similar bandwidth to masking functions obtained with grating stimuli (∼30 degrees). Dichoptic masking fails to show reliable orientation-tuned masking, but dichoptic masks at very low contrast produce a narrowly tuned facilitation (∼17 degrees). For iso-oriented streak masks and grating targets, we also explored masking as a function of mask contrast. Interestingly, dichoptic masking shows a classic "dipper"-like TVC function, whereas monoptic masking shows no dip and a steeper "handle". There is a very strong unoriented component to the masking, which we attribute to transiently biased temporal frequency masking. Fourier analysis of "motion streak" images shows interesting differences between dichoptic and monoptic functions and the information in the stimulus. Our data add weight to the growing body of evidence that the oriented blur of motion streaks contributes to the processing of fast motion signals.

  10. Detectors for timing measurements 2. Streak cameras and fast photodiodes

    International Nuclear Information System (INIS)

    Tanaka, Yoshihito; Adachi, Shin-ichi

    2009-01-01

    Measuring methods of the pulse structure and its stability of the synchrotron radiation, and the method of time resolving measurement by synchronizing the external signal with the synchrotron radiation pulse are explained. The synchrotron radiation pulse width ranges from some ten to some hundred pico-seconds, and the time resolution of the detectors should be better than some pico-seconds. The streak camera is such a fast detector. Instead of the streak camera which is large-scaled and expensive, fast photo-detectors can be employed to know entire time structures. Some examples of time-synchronized measurements using the streak camera and the fast photo-detector are presented. (K.Y.)

  11. Picosecond X-ray streak camera dynamic range measurement

    Energy Technology Data Exchange (ETDEWEB)

    Zuber, C., E-mail: celine.zuber@cea.fr; Bazzoli, S.; Brunel, P.; Gontier, D.; Raimbourg, J.; Rubbelynck, C.; Trosseille, C. [CEA, DAM, DIF, F-91297 Arpajon (France); Fronty, J.-P.; Goulmy, C. [Photonis SAS, Avenue Roger Roncier, BP 520, 19106 Brive Cedex (France)

    2016-09-15

    Streak cameras are widely used to record the spatio-temporal evolution of laser-induced plasma. A prototype of picosecond X-ray streak camera has been developed and tested by Commissariat à l’Énergie Atomique et aux Énergies Alternatives to answer the Laser MegaJoule specific needs. The dynamic range of this instrument is measured with picosecond X-ray pulses generated by the interaction of a laser beam and a copper target. The required value of 100 is reached only in the configurations combining the slowest sweeping speed and optimization of the streak tube electron throughput by an appropriate choice of high voltages applied to its electrodes.

  12. Design of neutron streak camera for fusion diagnostics

    International Nuclear Information System (INIS)

    Wang, C.L.; Kalibjian, R.; Singh, M.S.

    1982-06-01

    The D-T burn time for advanced laser-fusion targets is calculated to be very short, 2 . Each fission fragment leaving the cathode generates 400 secondary electrons that are all < 20 eV. These electrons are focussed to a point with an extractor and an anode, and are then purified with an electrostatic deflector. The electron beam is streaked and detected with the standard streak camera techniques. Careful shielding is needed for x-rays from the fusion target and general background. It appears that the neutron streak camera can be a viable and unique tool for studying temporal history of fusion burns in D-T plasmas of a few keV ion temperature

  13. Cassava brown streak disease effects on leaf metabolites and ...

    African Journals Online (AJOL)

    Cassava Brown Streak Disease (CBSD) is a threat to productivity and product quality in East Africa. The objective of this study was to understand the effect of CBSD on the primary photosynthetic apparatus of cassava (Manihot esculenta Crantz). Three cassava varieties with varying levels of reaction to infection by CBSD ...

  14. Detection of banana streak virus (BSV) Tamil Nadu isolate (India ...

    African Journals Online (AJOL)

    Banana streak virus (BSV) is of quarantine significance since Musa is a vegetatively propagated crop. Diagnosis by symptomatology is unreliable because the symptoms are variable or absent. Hence, reliable and sensitive diagnostic tests are of major significance. Such sensitive diagnostic tests are also required for virus ...

  15. cassava brown streak disease effects on leaf metabolites

    African Journals Online (AJOL)

    USER

    Cassava Brown Streak Disease (CBSD) is a threat to productivity and product quality in East Africa. The objective of this study was to understand the effect of CBSD on the primary photosynthetic apparatus of cassava (Manihot esculenta Crantz). Three cassava varieties with varying levels of reaction to infection by CBSD.

  16. MR imaging of medullary streaks in osteosclerosis: a case report

    International Nuclear Information System (INIS)

    Lee, Hak Soo; Joo, Kyung Bin; Park, Tae Soo; Song, Ho Taek; Kim, Yong Soo; Park, Dong Woo; Park, Choong Ki

    2000-01-01

    We present a case of medullary sclerosis of the appendicular skeleton in a patient with chronic renal insufficiency for whom MR imaging findings were characteristic. T1- and T2-weighted MR images showed multiple vertical lines (medullary streaks) of low signal intensity in the metaphyses and diaphyses of the distal femur and proximal tibia

  17. Soft x-ray streak camera for laser fusion applications

    International Nuclear Information System (INIS)

    Stradling, G.L.

    1981-04-01

    This thesis reviews the development and significance of the soft x-ray streak camera (SXRSC) in the context of inertial confinement fusion energy development. A brief introduction of laser fusion and laser fusion diagnostics is presented. The need for a soft x-ray streak camera as a laser fusion diagnostic is shown. Basic x-ray streak camera characteristics, design, and operation are reviewed. The SXRSC design criteria, the requirement for a subkilovolt x-ray transmitting window, and the resulting camera design are explained. Theory and design of reflector-filter pair combinations for three subkilovolt channels centered at 220 eV, 460 eV, and 620 eV are also presented. Calibration experiments are explained and data showing a dynamic range of 1000 and a sweep speed of 134 psec/mm are presented. Sensitivity modifications to the soft x-ray streak camera for a high-power target shot are described. A preliminary investigation, using a stepped cathode, of the thickness dependence of the gold photocathode response is discussed. Data from a typical Argus laser gold-disk target experiment are shown

  18. Reliable and Repeatable Characterization of Optical Streak Cameras

    International Nuclear Information System (INIS)

    Charest Jr., Michael; Torres, Peter III; Silbernagel, Christopher; Kalantar, Daniel

    2008-01-01

    Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information

  19. Evaluation of new generations of maize streak virus (msv) resistant ...

    African Journals Online (AJOL)

    Five new generations of maize streak virus (MSV) resistant varieties were evaluated along with two checks in replicated trials and for two years in a southern guinea savanna ecology of Nigeria, which is an endemic zone for the disease. Difference in grain yield between favourable growing season in 2002 and unfavourable ...

  20. Laparoscopic Removal of Streak Gonads in Turner Syndrome.

    Science.gov (United States)

    Mandelberger, Adrienne; Mathews, Shyama; Andikyan, Vaagn; Chuang, Linus

    To demonstrate the skills necessary for complete resection of bilateral streak gonads in Turner syndrome. Video case presentation with narration highlighting the key techniques used. The video was deemed exempt from formal review by our institutional review board. Turner syndrome is a form of gonadal dysgenesis that affects 1 in 2500 live births. Patients often have streak gonads and may present with primary amenorrhea or premature ovarian failure. Patients with a mosaic karyotype that includes a Y chromosome are at increased risk for gonadoblastoma and subsequent transformation into malignancy. Gonadectomy is recommended for these patients, typically at adolescence. Streak gonads can be difficult to identify, and tissue margins are often in close proximity to critical retroperitoneal structures. Resection can be technically challenging and requires a thorough understanding of retroperitoneal anatomy and precise dissection techniques to ensure complete removal. Laparoscopic approach to bilateral salpingo-oophorectomy of streak gonads. Retroperitoneal dissection and ureterolysis are performed, with the aid of the Ethicon Harmonic Ace, to ensure complete gonadectomy. Careful and complete resection of gonadal tissue in the hands of a skilled laparoscopic surgeon is key for effective cancer risk reduction surgery in Turner syndrome mosaics. Copyright © 2016 AAGL. Published by Elsevier Inc. All rights reserved.

  1. Streak cameras for soft x-ray and optical radiation

    International Nuclear Information System (INIS)

    Medecki, H.

    1983-01-01

    The principal component of a streak camera is the image converter tube. A slit-shaped photocathode transforms the radiation into a proportional emission of electrons. An electron - optics arrangement accelerates the electrons and projects them into a phosphor screen creating the image of the slit. A pair of deflection plates deflects the electronic beam along a direction perpendicular to the main dimension of the slit. Different portions of the phosphor screen show the instantaneous image of the slit with brightness proportional to the number of emitted electrons and, consequently, to the intensity of the radiation. For our x-ray streak cameras, we use the RCA C73435A image conventer tube intended for the measurement of the radiation of light and modified to have an x-ray sensitive photocathode. Practical considerations lead to the use of transparent rather than reflecting photocathodes. Several of these camera tubes are briefly described

  2. Tolerance to maize streak virus in local Burundi highland maize

    Directory of Open Access Journals (Sweden)

    Zeigler, RS.

    1986-01-01

    Full Text Available Maize plants apparently tolerant to maize streak virus were selected in farmer fields during a maize streak epidemie in the Burundi highlands in 1983-84. Progeny of these selections were tested under natural infection in the lowlands, with tolerant plants then either open or self-pollinated. Progeny of these tolerant plants were tested in the highlands using mass-reared Cicadulina vectors and a highland virus source, and ranged from very tolerant to susceptible. Inheritance of tolerance is consistent with its control by several genes and/or the presence of a number of modifying factors. A technique for mass rearing of vectors in a cool climate is presented.

  3. Streaked x-ray microscopy of laser-fusion targets

    International Nuclear Information System (INIS)

    Price, R.H.; Campbell, E.M.; Rosen, M.D.; Auerbach, J.M.; Phillion, D.W.; Whitlock, R.R.; Obenshain, S.P.; McLean, E.A.; Ripin, B.H.

    1982-08-01

    An ultrafast soft x-ray streak camera has been coupled to a Wolter axisymmetric x-ray microscope. This system was used to observe the dynamics of laser fusion targets both in self emission and backlit by laser produced x-ray sources. Spatial resolution was 7 μm and temporal resolution was 20 ps. Data is presented showing the ablative acceleration of foils to velocities near 10 7 cm/sec and the collision of an accelerated foil with a second foil, observed using 3 keV streaked x-ray backlighting. Good agreement was found between hydrocode simulations, simple models of the ablative acceleration and the observed velocities of the carbon foils

  4. Small-size meshless 50 ps streak tube

    Science.gov (United States)

    Ageeva, N. V.; Andreev, S. V.; Belolipetski, V. S.; Bryukhnevich, G. I.; Greenfield, D. E.; Ivanova, S. R.; Kaverin, A. M.; Khohlova, A. N.; Kuz'menko, E. A.; Levina, G. P.; Makushina, V. A.; Monastyrskiy, M. A.; Schelev, M. Ya.; Semichastnova, Z. M.; Serdyuchenko, Yu. N.; Skaballanovich, T. A.; Sokolov, V. E.

    2008-11-01

    In contrast to the conventional image intensifier with large work area, a streak image tube should possess additional important feature - the comparatively small temporal distortion at the entire work area of the photocathode. With this additional engineering restriction taken into account, a novel small-size meshless streak image tube has been developed by means of numerical optimization. The tube with 25-mm wide work area contains a pair of deflection plates to sweep the electron image along the 25 mm output phosphor screen that is separated by 100 mm from the photocathode. The electron image can be shuttered with a 300 V blanking electric pulse. Electron-optical magnification of the tube is unit; spatial resolution reaches 30 lp/mm over the entire photocathode work area; temporal resolution lies in the 20 - 50 ps range, depending on the accelerating voltage (6 - 15 kV).

  5. A novel simultaneous streak and framing camera without principle errors

    Science.gov (United States)

    Jingzhen, L.; Fengshan, S.; Ningwen, L.; Xiangdong, G.; Bin, H.; Qingyang, W.; Hongyi, C.; Yi, C.; Xiaowei, L.

    2018-02-01

    A novel simultaneous streak and framing camera with continuous access, the perfect information of which is far more important for the exact interpretation and precise evaluation of many detonation events and shockwave phenomena, has been developed. The camera with the maximum imaging frequency of 2 × 106 fps and the maximum scanning velocity of 16.3 mm/μs has fine imaging properties which are the eigen resolution of over 40 lp/mm in the temporal direction and over 60 lp/mm in the spatial direction and the framing frequency principle error of zero for framing record, and the maximum time resolving power of 8 ns and the scanning velocity nonuniformity of 0.136%~-0.277% for streak record. The test data have verified the performance of the camera quantitatively. This camera, simultaneously gained frames and streak with parallax-free and identical time base, is characterized by the plane optical system at oblique incidence different from space system, the innovative camera obscura without principle errors, and the high velocity motor driven beryllium-like rotating mirror, made of high strength aluminum alloy with cellular lateral structure. Experiments demonstrate that the camera is very useful and reliable to take high quality pictures of the detonation events.

  6. The stabilizing effect of streaks on Tollmien-Schlichting and oblique waves: A parametric study

    Science.gov (United States)

    Bagheri, Shervin; Hanifi, Ardeshir

    2007-07-01

    The stabilizing effect of finite amplitude streaks on the linear growth of unstable perturbations [Tollmien-Schlichting (TS) and oblique waves] is numerically investigated by means of the nonlinear parabolized stability equations. We have found that for stabilization of a TS-wave, there exists an "optimal" spanwise spacing of the streaks. These streaks reach their maximum amplitudes close to the first neutral point of the TS-wave and induce the largest distortion of the mean flow in the unstable region of the TS-wave. For such a distribution, the required streak amplitude for complete stabilization of a given TS-wave is considerably lower than for β =0.45, which is the optimal for streak growth and used in previous studies. We have also observed a damping effect of streaks on the growth rate of oblique waves in Blasius boundary layer and for TS-waves in Falkner-Skan boundary layers.

  7. Molecular diagnostics, genetic diversity and generating infectious clones for cassava brown streak viruses

    OpenAIRE

    Musa, Muawiya Abarshi

    2012-01-01

    Cassava brown streak disease (CBSD) threatens cassava production in eastern and southern African countries. Diagnostic protocols currently available for the causal agents of CBSD, Cassava brown streak virus (CBSV) and Cassava brown streak Uganda virus (CBSUV), were unreliable but were urgently needed. In this study, sampling procedures and diagnostic protocols were developed for accurate and reliable detection of both CBSV and CBSUV. The cetyltrimethylammonium bromide (CTAB) method of RNA ext...

  8. Transition due to streamwise streaks in a supersonic flat plate boundary layer

    Science.gov (United States)

    Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

    2016-12-01

    Transition induced by stationary streaks undergoing transient growth in a supersonic flat plate boundary layer flow is studied using numerical computations. While the possibility of strong transient growth of small-amplitude stationary perturbations in supersonic boundary layer flows has been demonstrated in previous works, its relation to laminar-turbulent transition cannot be established within the framework of linear disturbances. Therefore, this paper investigates the nonlinear evolution of initially linear optimal disturbances that evolve into finite amplitude streaks in the downstream region, and then studies the modal instability of those streaks as a likely cause for the onset of bypass transition. The nonmodal evolution of linearly optimal stationary perturbations in a supersonic, Mach 3 flat plate boundary layer is computed via the nonlinear plane-marching parabolized stability equations (PSE) for stationary perturbations, or equivalently, the perturbation form of parabolized Navier-Stokes equations. To assess the effect of the nonlinear finite-amplitude streaks on transition, the linear form of plane-marching PSE is used to investigate the instability of the boundary layer flow modified by the spanwise periodic streaks. The onset of transition is estimated using an N -factor criterion based on modal amplification of the secondary instabilities of the streaks. In the absence of transient growth disturbances, first mode instabilities in a Mach 3, zero pressure gradient boundary layer reach N =10 at Rex≈107 . However, secondary instability modes of the stationary streaks undergoing transient growth are able to achieve the same N -factor at Rex<2 ×106 when the initial streak amplitude is sufficiently large. In contrast to the streak instabilities in incompressible flows, subharmonic instability modes with twice the fundamental spanwise wavelength of the streaks are found to have higher amplification ratios than the streak instabilities at fundamental

  9. Low speed streak formation in a separating turbulent boundary layer

    Science.gov (United States)

    Santos, Leonardo; Lang, Amy; Wahidi, Redha; Bonacci, Andrew

    2017-11-01

    Separation control mechanisms present on the skin of the shortfin mako shark may permit higher swimming speeds. The morphology of the scales varies over the entire body, with maximum scale flexibility found on the flank region with an adverse pressure gradient(APG). It is hypothesized that reversing flow close the skin bristles the scales inhibiting further flow reversal and controlling flow separation. Experiments are conducted in water tunnel facility and the flow field of a separating turbulent boundary layer(TBL) is measured using DPIV and Insight V3V. Flow separation is induced by a rotating cylinder which generates a controlled APG over a flat plate (Re = 510000 and 620000). Specifically, the low speed streak(LSS) formation is documented and matches predicted sizing based on viscous length scale calculations. It is surmised that shark scale width corresponds to this LSS sizing for real swimming TBL conditions. However, flow separation control has been demonstrated over real skin specimens under much lower speed conditions which indicates the mechanism is fairly Re independent if multiple scales are bristled as the width of the LSS increases. The formation of reversing flow within the streaks is studied specifically to better understand the process by which this flow initiates scale bristling on shortfin mako skin as a passive, flow actuated separation control mechanism. The authors would like to greatefully acknowledge the Army Research Office for funding this project.

  10. Microprocessor-controlled, wide-range streak camera

    International Nuclear Information System (INIS)

    Amy E. Lewis; Craig Hollabaugh

    2006-01-01

    Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera's user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized

  11. STREAK CAMERA MEASUREMENTS OF THE APS PC GUN DRIVE LASER

    Energy Technology Data Exchange (ETDEWEB)

    Dooling, J. C.; Lumpkin, A. H.

    2017-06-25

    We report recent pulse-duration measurements of the APS PC Gun drive laser at both second harmonic and fourth harmonic wavelengths. The drive laser is a Nd:Glass-based chirped pulsed amplifier (CPA) operating at an IR wavelength of 1053 nm, twice frequency-doubled to obtain UV output for the gun. A Hamamatsu C5680 streak camera and an M5675 synchroscan unit are used for these measurements; the synchroscan unit is tuned to 119 MHz, the 24th subharmonic of the linac s-band operating frequency. Calibration is accomplished both electronically and optically. Electronic calibration utilizes a programmable delay line in the 119 MHz rf path. The optical delay uses an etalon with known spacing between reflecting surfaces and is coated for the visible, SH wavelength. IR pulse duration is monitored with an autocorrelator. Fitting the streak camera image projected profiles with Gaussians, UV rms pulse durations are found to vary from 2.1 ps to 3.5 ps as the IR varies from 2.2 ps to 5.2 ps.

  12. Automated computer analysis of plasma-streak traces from SCYLLAC

    International Nuclear Information System (INIS)

    Whiteman, R.L.; Jahoda, F.C.; Kruger, R.P.

    1977-11-01

    An automated computer analysis technique that locates and references the approximate centroid of single- or dual-streak traces from the Los Alamos Scientific Laboratory SCYLLAC facility is described. The technique also determines the plasma-trace width over a limited self-adjusting region. The plasma traces are recorded with streak cameras on Polaroid film, then scanned and digitized for processing. The analysis technique uses scene segmentation to separate the plasma trace from a reference fiducial trace. The technique employs two methods of peak detection; one for the plasma trace and one for the fiducial trace. The width is obtained using an edge-detection, or slope, method. Timing data are derived from the intensity modulation of the fiducial trace. To smooth (despike) the output graphs showing the plasma-trace centroid and width, a technique of ''twicing'' developed by Tukey was employed. In addition, an interactive sorting algorithm allows retrieval of the centroid, width, and fiducial data from any test shot plasma for post analysis. As yet, only a limited set of the plasma traces has been processed with this technique

  13. Automated computer analysis of plasma-streak traces from SCYLLAC

    International Nuclear Information System (INIS)

    Whitman, R.L.; Jahoda, F.C.; Kruger, R.P.

    1977-01-01

    An automated computer analysis technique that locates and references the approximate centroid of single- or dual-streak traces from the Los Alamos Scientific Laboratory SCYLLAC facility is described. The technique also determines the plasma-trace width over a limited self-adjusting region. The plasma traces are recorded with streak cameras on Polaroid film, then scanned and digitized for processing. The analysis technique uses scene segmentation to separate the plasma trace from a reference fiducial trace. The technique employs two methods of peak detection; one for the plasma trace and one for the fiducial trace. The width is obtained using an edge-detection, or slope, method. Timing data are derived from the intensity modulation of the fiducial trace. To smooth (despike) the output graphs showing the plasma-trace centroid and width, a technique of ''twicing'' developed by Tukey was employed. In addition, an interactive sorting algorithm allows retrieval of the centroid, width, and fiducial data from any test shot plasma for post analysis. As yet, only a limited set of sixteen plasma traces has been processed using this technique

  14. Microprocessor-controlled, wide-range streak camera

    Energy Technology Data Exchange (ETDEWEB)

    Amy E. Lewis, Craig Hollabaugh

    2006-09-01

    Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera’s user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized.

  15. Efficiency of non-vector methods of Cassava brown streak virus ...

    African Journals Online (AJOL)

    Several etiological and epidemiological studies have been undertaken to determine the disease causal agent and the mechanism of spread of Cassava brown streak disease (CBSD). Until recently, two distinct potyviruses have been reported to cause the disease. These are Cassava brown streak virus (originated in ...

  16. Robust reconstruction of time-resolved diffraction from ultrafast streak cameras

    Directory of Open Access Journals (Sweden)

    Daniel S. Badali

    2017-09-01

    Full Text Available In conjunction with ultrafast diffraction, streak cameras offer an unprecedented opportunity for recording an entire molecular movie with a single probe pulse. This is an attractive alternative to conventional pump-probe experiments and opens the door to studying irreversible dynamics. However, due to the “smearing” of the diffraction pattern across the detector, the streaking technique has thus far been limited to simple mono-crystalline samples and extreme care has been taken to avoid overlapping diffraction spots. In this article, this limitation is addressed by developing a general theory of streaking of time-dependent diffraction patterns. Understanding the underlying physics of this process leads to the development of an algorithm based on Bayesian analysis to reconstruct the time evolution of the two-dimensional diffraction pattern from a single streaked image. It is demonstrated that this approach works on diffraction peaks that overlap when streaked, which not only removes the necessity of carefully choosing the streaking direction but also extends the streaking technique to be able to study polycrystalline samples and materials with complex crystalline structures. Furthermore, it is shown that the conventional analysis of streaked diffraction can lead to erroneous interpretations of the data.

  17. Quantitative trait loci for resistance to maize streak virus disease in ...

    African Journals Online (AJOL)

    Maize streak virus disease is an important disease of maize in Kenya. In this study, we mapped and characterized quantitative trait loci affecting resistance to maize streak virus in maize populations of S4 families from the cross of one resistant MAL13 and one susceptible MAL9 recombinant inbred lines. Resistance was ...

  18. Fabry-Perot interferometry using an image-intensified rotating-mirror streak camera

    International Nuclear Information System (INIS)

    Seitz, W.L.; Stacy, H.L.

    1983-01-01

    A Fabry-Perot velocity interferometer system is described that uses a modified rotating mirror streak camera to recrod the dynamic fringe positions. A Los Alamos Model 72B rotating-mirror streak camera, equipped with a beryllium mirror, was modified to include a high aperture (f/2.5) relay lens and a 40-mm image-intensifier tube such that the image normally formed at the film plane of the streak camera is projected onto the intensifier tube. Fringe records for thin (0.13 mm) flyers driven by a small bridgewire detonator obtained with a Model C1155-01 Hamamatsu and Model 790 Imacon electronic streak cameras are compared with those obtained with the image-intensified rotating-mirror streak camera (I 2 RMC). Resolution comparisons indicate that the I 2 RMC gives better time resolution than either the Hamamatsu or the Imacon for total writing times of a few microseconds or longer

  19. Betting Decision Under Break-Streak Pattern: Evidence from Casino Gaming.

    Science.gov (United States)

    Fong, Lawrence Hoc Nang; So, Amy Siu Ian; Law, Rob

    2016-03-01

    Cognitive bias is prevalent among gamblers, especially those with gambling problems. Grounded in the heuristics theories, this study contributes to the literature by examining a cognitive bias triggered by the break streak pattern in the casino setting. We postulate that gamblers tend to bet on the latest outcome when there is a break-streak pattern. Moreover, three determinants of the betting decision under break-streak pattern, including the streak length of the alternative outcome, the frequency of the latest outcome, and gender, were identified and examined in this study. A non-participatory observational study was conducted among the Cussec gamblers in a casino in Macao. An analysis of 1229 bets confirms our postulation, particularly when the streak of the alternative outcome is long, the latest outcome is frequent, and the gamblers are females. The findings provide meaningful implications for casino management and public policymakers regarding the minimization of gambling harm.

  20. Characterization of X-ray streak cameras for use on Nova

    International Nuclear Information System (INIS)

    Kalantar, D.H.; Bell, P.M.; Costa, R.L.; Hammel, B.A.; Landen, O.L.; Orzechowski, T.J.; Hares, J.D.; Dymoke-Bradshaw, A.K.L.

    1996-10-01

    There are many different types of measurements that require a continuous time history of x-ray emission that can be provided with an x-ray streak camera. In order to properly analyze the images that are recorded with the x-ray streak cameras operated on Nova, it is important to account for the streak characterization of each camera. We have performed a number of calibrations of the streak cameras both on the bench as well as with Nova disk target shots where we use a time modulated laser intensity profile (self-beating of the laser) an the target to generate an x-ray comb. We have measured the streak camera sweep direction and spatial offset, curvature of the electron optics, sweep rate, and magnification and resolution of the electron optics

  1. Characterization of X-ray streak cameras for use on Nova

    International Nuclear Information System (INIS)

    Kalantar, D.H.; Bell, P.M.; Costa, R.L.; Hammel, B.A.; Landen, O.L.; Orzechowski, T.J.; Hares, J.D.; Dymoke-Bradshaw, A.K.L.

    1996-09-01

    There are many different types of measurements that require a continuous time history of x-ray emission that can be provided with an x-ray streak camera. In order to properly analyze the images that are recorded with the x-ray streak cameras operated on Nova, it is important to account for the streak characterization of each camera. We have performed a number of calibrations of the streak cameras both on the bench as well as with Nova disk target shots where we use a time modulated laser intensity profile (self-beating of the laser) on the target to generate an x-ray comb. We have measured the streak camera sweep direction and spatial offset, curvature of the electron optics, sweep rate, and magnification and resolution of the electron optics

  2. Vascular Streak Dieback: Penyakit Baru Tanaman Kakao di Sumatera Barat

    Directory of Open Access Journals (Sweden)

    Jumsu Trisno

    2016-11-01

    Full Text Available Vascular streak dieback (VSD symptoms was reported recently in several cacao plantations in West Sumatera.  Disease incidence reached 58.82–100% with disease intensity of 24.29–44.71%.  In some cases, dead plant was also found. Fungal isolation was performed to identify the agents associated with VSD.  Plant samples showing VSD symptoms was collected from 3 locations of cacao production center in West Sumatera, i.e. Limapuluh Kota regency, Padang Pariaman regency, and Padang city.  Small pieces of leaf and twig were plated on water agar and potato dextrose agar medium for fungal isolation.  Morphology of hifa, basidiocarp, and basidiospora observed from fungi colonies indicated the presence of Ceratobasidium theobromae on infected plant samples.  This is the first report on the association of C. theobromae on cacao in West Sumatera. 

  3. Wheat curl mite (Acari: Eriophyidae) dispersal and its relationship with kernel red streaking in maize.

    Science.gov (United States)

    Liu, J; Lee, E A; Sears, M K; Schaafsma, A W

    2005-10-01

    Wheat curl mites, Aceria tosichella Keifer, dispersing from wheat (Triticum spp.) to nearby corn (Zea mays L.) fields play a role in the development of kernel red streaking in corn. These studies were undertaken to verify the relationship of wheat curl mite to kernel red streaking, to determine whether wheat is the main source of curl mites dispersing into corn and to determine whether planting corn in temporal or spatial isolation of wheat is a valid management strategy. These studies were conducted on farm fields using sticky traps to monitor mites, followed by sampling mature grain for kernel streaking in southwestern Ontario from 1999 to 2002. The dominant source mites were winter wheat. Mite dispersal occurred during the first 3 wk of winter wheat maturation after the wheat had reached Zadoks stage 87. Mite dispersal corresponded to prevailing winds in the area with the lowest number of mites and the lowest severity of kernel red streaking occurring 60 m from wheat fields planted to the north, south, and east of cornfields and 90 m from wheat fields planted to the west of cornfields. The severity of kernel red streaking was positively correlated with the density of wheat curl mites in corn; however, the correlation was weak and kernel red streaking was still high in many cornfields when few or no mites were present. These findings suggest that wheat curl mite migration into corn is not entirely predictive of the incidence and severity of kernel red streaking.

  4. Earth aeolian wind streaks: Comparison to wind data from model and stations

    Science.gov (United States)

    Cohen-Zada, A. L.; Maman, S.; Blumberg, D. G.

    2017-05-01

    Wind streak is a collective term for a variety of aeolian features that display distinctive albedo surface patterns. Wind streaks have been used to map near-surface winds and to estimate atmospheric circulation patterns on Mars and Venus. However, because wind streaks have been studied mostly on Mars and Venus, much of the knowledge regarding the mechanism and time frame of their formation and their relationship to the atmospheric circulation cannot be verified. This study aims to validate previous studies' results by a comparison of real and modeled wind data with wind streak orientations as measured from remote-sensing images. Orientations of Earth wind streaks were statistically correlated to resultant drift direction (RDD) values calculated from reanalysis and wind data from 621 weather stations. The results showed good agreement between wind streak orientations and reanalysis RDD (r = 0.78). A moderate correlation was found between the wind streak orientations and the weather station data (r = 0.47); a similar trend was revealed on a regional scale when the analysis was performed by continent, with r ranging from 0.641 in North America to 0.922 in Antarctica. At sites where wind streak orientations did not correspond to the RDDs (i.e., a difference of 45°), seasonal and diurnal variations in the wind flow were found to be responsible for deviation from the global pattern. The study thus confirms that Earth wind streaks were formed by the present wind regime and they are indeed indicative of the long-term prevailing wind direction on global and regional scales.

  5. FLASH free-electron laser single-shot temporal diagnostic: terahertz-field-driven streaking.

    Science.gov (United States)

    Ivanov, Rosen; Liu, Jia; Brenner, Günter; Brachmanski, Maciej; Düsterer, Stefan

    2018-01-01

    The commissioning of a terahertz-field-driven streak camera installed at the free-electron laser (FEL) FLASH at DESY in Hamburg, being able to deliver photon pulse duration as well as arrival time information with ∼10 fs resolution for each single XUV FEL pulse, is reported. Pulse durations between 300 fs and terahertz-streaking setup was operated simultaneously to an alternative method to determine the FEL pulse duration based on spectral analysis. FLASH pulse duration derived from simple spectral analysis is in good agreement with that from terahertz-streaking measurement.

  6. Stabilization of the hypersonic boundary layer by finite-amplitude streaks

    Science.gov (United States)

    Ren, Jie; Fu, Song; Hanifi, Ardeshir

    2016-02-01

    Stabilization of two-dimensional disturbances in hypersonic boundary layer flows by finite-amplitude streaks is investigated using nonlinear parabolized stability equations. The boundary-layer flows at Mach numbers 4.5 and 6.0 are studied in which both first and second modes are supported. The streaks considered here are driven either by the so-called optimal perturbations (Klebanoff-type) or the centrifugal instability (Görtler-type). When the streak amplitude is in an appropriate range, i.e., large enough to modulate the laminar boundary layer but low enough to not trigger secondary instability, both first and second modes can effectively be suppressed.

  7. Laser-based terahertz-field-driven streak camera for the temporal characterization of ultrashort processes

    Energy Technology Data Exchange (ETDEWEB)

    Schuette, Bernd

    2011-09-15

    In this work, a novel laser-based terahertz-field-driven streak camera is presented. It allows for a pulse length characterization of femtosecond (fs) extreme ultraviolet (XUV) pulses by a cross-correlation with terahertz (THz) pulses generated with a Ti:sapphire laser. The XUV pulses are emitted by a source of high-order harmonic generation (HHG) in which an intense near-infrared (NIR) fs laser pulse is focused into a gaseous medium. The design and characterization of a high-intensity THz source needed for the streak camera is also part of this thesis. The source is based on optical rectification of the same NIR laser pulse in a lithium niobate crystal. For this purpose, the pulse front of the NIR beam is tilted via a diffraction grating to achieve velocity matching between NIR and THz beams within the crystal. For the temporal characterization of the XUV pulses, both HHG and THz beams are focused onto a gas target. The harmonic radiation creates photoelectron wavepackets which are then accelerated by the THz field depending on its phase at the time of ionization. This principle adopted from a conventional streak camera and now widely used in attosecond metrology. The streak camera presented here is an advancement of a terahertz-field-driven streak camera implemented at the Free Electron Laser in Hamburg (FLASH). The advantages of the laser-based streak camera lie in its compactness, cost efficiency and accessibility, while providing the same good quality of measurements as obtained at FLASH. In addition, its flexibility allows for a systematic investigation of streaked Auger spectra which is presented in this thesis. With its fs time resolution, the terahertz-field-driven streak camera thereby bridges the gap between attosecond and conventional cameras. (orig.)

  8. An Optical Streaking Method for Measuring Femtosecond Electron Bunches

    International Nuclear Information System (INIS)

    Ding, Yuantao

    2011-01-01

    The measurement of the ultra-short electron bunch length on the femtosecond time scale constitutes a very challenging problem. In the x-ray free electron laser facilities such as the Linac Coherent Light Source, generation of a sub-ten femtoseconds electron beam with 20pC charge is possible, but direct measurements are very difficult due to the resolution limit of the present diagnostics. We propose a new method here based on the measurement of the electron beam energy modulation induced from laser-electron interaction in a short wiggler. A typical optical streaking method requires a laser wavelength much longer than the electron bunch length. In this paper a laser with its wavelength shorter than the electron bunch length has been adopted, while the slope on the laser intensity envelope is used to distinguish the different periods. With this technique it is possible to reconstruct the bunch longitudinal profile from a single shot measurement. Generation of ultrashort x-ray pulses at femtoseconds (fs) scale is of great interest within synchrotron radiation and free electron laser (FEL) user community. One of the simple methods is to operate the FEL facility at low charge. At the Linac Coherent Light Source (LCLS), we have demonstrated the capability of generating ultrashort electron-beam (e-beam) with a duration of less than 10 fs fwhm using 20 pC charge. The x-ray pulses have been delivered to the x-ray users with a similar or even shorter pulse duration. However, The measurement of such short electron or x-ray pulse length at the fs time-scale constitutes a challenging problem. A standard method using an S-band radio-frequency (rf) transverse deflector has been established at LCLS, which works like a streak camera for electrons and is capable of resolving bunch lengths as short as 25 fs fwhm. With this device, the electrons are transversely deflected by the high-frequency time-variation of the deflecting fields. Increasing the deflecting voltage and rf frequency

  9. Performances Of The New Streak Camera TSN 506

    Science.gov (United States)

    Nodenot, P.; Imhoff, C.; Bouchu, M.; Cavailler, C.; Fleurot, N.; Launspach, J.

    1985-02-01

    The number of streack cameras used in research laboratory has been continuously increased du-ring the past years. The increasing of this type of equipment is due to the development of various measurement techniques in the nanosecond and picosecond range. Among the many different applications, we would mention detonics chronometry measurement, measurement of the speed of matter by means of Doppler-laser interferometry, laser and plasma diagnostics associated with laser-matter interaction. The old range of cameras have been remodelled, in order to standardize and rationalize the production of ultrafast cinematography instruments, to produce a single camera known as TSN 506. Tne TSN 506 is composed of an electronic control unit, built around the image converter tube it can be fitted with a nanosecond sweep circuit covering the whole range from 1 ms to 200 ns or with a picosecond circuit providing streak durations from 1 to 100 ns. We shall describe the main electronic and opto-electronic performance of the TSN 506 operating in these two temporal fields.

  10. Black leaf streak disease affects starch metabolism in banana fruit.

    Science.gov (United States)

    Saraiva, Lorenzo de Amorim; Castelan, Florence Polegato; Shitakubo, Renata; Hassimotto, Neuza Mariko Aymoto; Purgatto, Eduardo; Chillet, Marc; Cordenunsi, Beatriz Rosana

    2013-06-12

    Black leaf streak disease (BLSD), also known as black sigatoka, represents the main foliar disease in Brazilian banana plantations. In addition to photosynthetic leaf area losses and yield losses, this disease causes an alteration in the pre- and postharvest behavior of the fruit. The aim of this work was to investigate the starch metabolism of fruits during fruit ripening from plants infected with BLSD by evaluating carbohydrate content (i.e., starch, soluble sugars, oligosaccharides, amylose), phenolic compound content, phytohormones, enzymatic activities (i.e., starch phosphorylases, α- and β-amylase), and starch granules. The results indicated that the starch metabolism in banana fruit ripening is affected by BLSD infection. Fruit from infested plots contained unusual amounts of soluble sugars in the green stage and smaller starch granules and showed a different pattern of superficial degradation. Enzymatic activities linked to starch degradation were also altered by the disease. Moreover, the levels of indole-acetic acid and phenolic compounds indicated an advanced fruit physiological age for fruits from infested plots.

  11. The resistance of cocoa hybrids to vascular-streak dieback

    Directory of Open Access Journals (Sweden)

    Agung Wahyu Soesilo

    2011-08-01

    Full Text Available Breeding for VSD resistance on cocoa was carried out by inter-crossing the selected clones of TSH 858, KW 162, KW 163, KW 165, KEE 2, ICS 13 and NIC 7 which were selected based on the criteria of VSD resistance, productivity and cross-compatibility. This research has objective to evaluate hybrids of the crossess for VSD resistance, inheritance of the resistance and selecting the most valuable parental-clones for further crossess. Fourteen hybrids and one control were tested 14 in the randomized-completely block design with 4 blocks where in each plot 16 trees planted at Kaliwining Experimental Station in Jember. The resistance was evaluated in the field by scoring the symptoms in the range of 0—6 at 7 year after planting. The scores were varied significantly among the hybrids in the range of 2.19—4.53. Hybrids which were generated from the crosses of resistant clones performed lower number of the score than the hybrids generated from crosses between two susceptible clones (TSH 858 x NIC 7 which performed highest score. The hybrids classified as resistant were TSH 858 x KW 162 (F1 and reciprocal, KW 162 x KEE 2 (F1 and reciprocal, KW 162 x ICS 13, KW 165 x KEE 2. Of the parental clones, KW 162 is the most promising parent as lower score obtained when used it as male or female compared to KEE 2 which performed quite similar of the score with TSH 858 as susceptible parent. Therefore, it could be supposed that KW 162 has better combining ability than KEE 2 where these resistant-clones showed different segregation of their resistance. The resistance was segregated by KW 162 in term of ratio 15 resistant : 1 susceptible while KEE 2 the ratio 1 resistant: 1 susceptible.Key words: Theobroma cocoa L., hybrid, resistance, vascular-streak dieback.

  12. Mars Eolian Geology at Airphoto Scales: The Large Wind Streaks of Western Arabia Terra

    Science.gov (United States)

    Edgett, Kenneth S.

    2001-01-01

    More than 27,000 pictures at aerial photograph scales (1.5-12 m/pixel) have been acquired by the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) since September 1997. The pictures are valuable for testing hypotheses about geologic history and processes of Mars. Of particular interest are eolian features connected to surface albedo patterns. This work is focused on low-albedo wind streaks, some over 100 km long, in western Arabia Terra. Each streak is widest where it originates at an impact crater (typically 25-150 km diameter). The streaks taper downwind. Within the associated craters there is a lower-albedo surface that, in nearly all observed cases, includes barchan dunes indicative of transport in the same direction as the wind streaks. Upwind of the dunes there is usually an outcrop of layered material that might have served as a source for dune sand. MOC images show that the west Arabia streaks consist of a smooth-surfaced, multiple-meters-thick, mantle (smooth at 1.5 m/pixel) that appears to be superposed on local surfaces. No dunes are present, indicating that down-streak transport of sediment via saltation and traction have not occurred. Two models might explain the observed properties: (1) the streaks consist of dark silt- and clay-sized grains deflated from the adjacent crater interiors and deposited from suspension or (2) they are remnants (protected in the lee of impact crater rims) of a formerly much larger, regional covering of low albedo, smooth-surfaced mantle. The latter hypothesis is based on observation of low albedo mantled surfaces occurring south of west Arabia in Terra Meridiani. For reasons yet unknown, a large fraction of the martian equatorial regions are covered by low albedo, mesa-forming material that lies unconformably atop eroded layered and cratered terrain. Both hypotheses are being explored via continued selective targeting of new MOC images as well as analyses of the new data.

  13. Identification and molecular characterization of a novel sugarcane streak mastrevirus and an isolate of the A-strain of maize streak virus from sugarcane in Nigeria.

    Science.gov (United States)

    Yahaya, Adama; Dangora, Danladi B; Alegbejo, Matthew D; Kumar, P Lava; Alabi, Olufemi J

    2017-02-01

    Sugarcane and maize plants showing symptoms typical of those described for the so-called "African streak viruses" (AfSVs) were encountered during field surveys conducted from February to July 2015 to document viruses infecting both crops across the northern Guinea savannah region of Nigeria. As part of this study, two categories of complete mastrevirus-like genome sequences were obtained from nine samples (maize = 2; sugarcane = 7). In pairwise comparisons, the full-length genomes of the first sequence category (2,687 nt each; maize = 2; sugarcane = 2) shared 96 to 99% identity with global isolates of the A-strain of maize streak virus (MSV-A), indicating that sugarcane may also serve as a reservoir host to MSV-A. Analysis of the complete genomes belonging to the second sequence category (2,757 nt each; sugarcane = 5) showed that they shared 42 to 67% identity with their closest AfSV relatives, thus indicating that they represent sequences of a novel mastrevirus. Both sequence categories shared 61-62% sequence identity with each other. Further analysis revealed that the novel sugarcane-infecting virus, tentatively named as sugarcane chlorotic streak virus (SCSV), arose from a putative interspecific recombination event involving two grass-infecting mastreviruses, eragrostis streak virus and urochloa streak virus, as putative parental sequences. The results of this study add to the repertoire of diverse AfSVs present in cereal and sugarcane mixed cropping landscapes in the northern Guinea savannah region of Nigeria, with implications for disease epidemiology.

  14. The sedimentology and dynamics of crater-affiliated wind streaks in western Arabia Terra, Mars and Patagonia, Argentina

    Science.gov (United States)

    Rodriguez, J.A.P.; Tanaka, K.L.; Yamamoto, A.; Berman, D.C.; Zimbelman, J.R.; Kargel, J.S.; Sasaki, S.; Jinguo, Y.; Miyamoto, H.

    2010-01-01

    Wind streaks comprise recent aeolian deposits that have been extensively documented on Venus, Earth and Mars. Martian wind streaks are among the most abundant surface features on the planet and commonly extend from the downwind margins of impact craters. Previous studies of wind streaks emerging from crater interior deposits suggested that the mode of emplacement was primarily related to the deposition of silt-sized particles as these settled from plumes. We have performed geologic investigations of two wind streaks clusters; one situated in western Arabia Terra, a region in the northern hemisphere of Mars, and another in an analogous terrestrial site located in southern Patagonia, Argentina, where occurrences of wind streaks emanate from playas within maar craters. In both these regions we have identified bedforms in sedimentary deposits on crater floors, along wind-facing interior crater margins, and along wind streaks. These observations indicate that these deposits contain sand-sized particles and that sediment migration has occurred via saltation from crater interior deposits to wind streaks. In Arabia Terra and in Patagonia wind streaks initiate from crater floors that contain lithic and evaporitic sedimentary deposits, suggesting that the composition of wind streak source materials has played an important role in development. Spatial and topographic analyses suggest that regional clustering of wind streaks in the studied regions directly correlates to the areal density of craters with interior deposits, the degree of proximity of these deposits, and the craters' rim-to-floor depths. In addition, some (but not all) wind streaks within the studied clusters have propagated at comparable yearly (Earth years) rates. Extensive saltation is inferred to have been involved in its propagation based on the studied terrestrial wind streak that shows ripples and dunes on its surface and the Martian counterpart changes orientation toward the downslope direction where it

  15. A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus.

    Science.gov (United States)

    Oluwafemi, Sunday; Kraberger, Simona; Shepherd, Dionne N; Martin, Darren P; Varsani, Arvind

    2014-10-01

    The A-strain of maize streak virus (MSV-A; genus Mastrevirus, family Geminiviridae), the causal agent of maize streak disease, places a major constraint on maize production throughout sub-Saharan Africa. In West-African countries such as Nigeria, where maize is not cultivated year-round, this MSV strain is forced to overwinter in non-maize hosts. In order to both identify uncultivated grasses that might harbour MSV-A during the winter season and further characterise the diversity of related maize-associated streak viruses, we collected maize and grass samples displaying streak symptoms in a number of Nigerian maize fields. From these we isolated and cloned 18 full mastrevirus genomes (seven from maize and 11 from various wild grass species). Although only MSV-A isolates were obtained from maize, both MSV-A and MSV-F isolates were obtained from Digitaria ciliaris. Four non-MSV African streak viruses were also sampled, including sugarcane streak Reunion virus and Urochloa streak virus (USV) from Eleusine coacana, USV from Urochloa sp., maize streak Reunion virus (MSRV) from both Setaria barbata and Rottboellia sp., and a novel highly divergent mastrevirus from Axonopus compressus, which we have tentatively named Axonopus compressus streak virus (ACSV). Besides the discovery of this new mastrevirus species and expanding the known geographical and host ranges of MSRV, we have added D. ciliaris to the list of uncultivated species within which Nigerian MSV-A isolates are possibly able to overwinter.

  16. The origin and structure of streak-like instabilities in laminar boundary layer flames

    Science.gov (United States)

    Gollner, Michael; Miller, Colin; Tang, Wei; Finney, Mark

    2017-11-01

    Streamwise streaks are consistently observed in wildland fires, at the base of pool fires, and in other heated flows within a boundary layer. This study examines both the origin of these structures and their role in influencing some of the macroscopic properties of the flow. Streaks were reproduced and characterized via experiments on stationary heated strips and liquid and gas-fueled burners in laminar boundary layer flows, providing a framework to develop theory based on both observed and measured physical phenomena. The incoming boundary layer was established as the controlling mechanism in forming streaks, which are generated by pre-existing coherent structures, while the amplification of streaks was determined to be compatible with quadratic growth of Rayleigh-Taylor Instabilities, providing credence to the idea that the downstream growth of streaks is strongly tied to buoyancy. These local instabilities were also found to affect macroscopic properties of the flow, including heat transfer to the surface, indicating that a two-dimensional assumption may fail to adequately describe heat and mass transfer during flame spread and other reacting boundary layer flows. This work was supported by NSF (CBET-1554026) and the USDA-FS (13-CS-11221637-124).

  17. Ice fall streaks in a warm front . An S-band polarimetric radar study

    Science.gov (United States)

    Keppas, Stavros; Crosier, Jonathan; Choularton, Thomas; Bower, Keith

    2017-04-01

    On 21st January 2009, a maturing low pressure system approached the UK along with several associated systems. An observational research flight (part of the APPRAISE-Clouds project) took place in southern England, sampling the leading warm front of this system. During the flight, the Warm Conveyor Belt (WCB) was well depicted by the radar Doppler velocity parameter. Simultaneously, extensive ice fall streaks appeared on ZDR RHI scans as long slanted zones of high ZDR. It seems that there is a connection between the WCB activity and the formation and structure of the ice fall streaks. The Kelvin-Helmholtz instability caused by the WCB played a key role on their formation. Moreover, in-situ measurements showed that the ice fall streaks had a very specific substance and they can affect the surface precipitation.

  18. Absolute calibration method for fast-streaked, fiber optic light collection, spectroscopy systems

    International Nuclear Information System (INIS)

    Johnston, Mark D.; Frogget, Brent; Oliver, Bryan Velten; Maron, Yitzhak; Droemer, Darryl W.; Crain, Marlon D.

    2010-01-01

    This report outlines a convenient method to calibrate fast (<1ns resolution) streaked, fiber optic light collection, spectroscopy systems. Such a system is used to collect spectral data on plasmas generated in the A-K gap of electron beam diodes fielded on the RITS-6 accelerator (8-12MV, 140-200kA). On RITS, light is collected through a small diameter (200 micron) optical fiber and recorded on a fast streak camera at the output of 1 meter Czerny-Turner monochromator (F/7 optics). To calibrate such a system, it is necessary to efficiently couple light from a spectral lamp into a 200 micron diameter fiber, split it into its spectral components, with 10 Angstroms or less resolution, and record it on a streak camera with 1ns or less temporal resolution.

  19. X-ray streak camera for observation of tightly pinched relativistic electron beams

    International Nuclear Information System (INIS)

    Johnson, D.J.

    1977-01-01

    A pinhole camera is coupled with a Pilot-B scintillator and image-intensified TRW streak camera to study pinched electron beam profiles via observation of anode target bremsstrahlung. Streak intensification is achieved with an EMI image intensifier operated at a gain of up to 10 6 which allows optimizing the pinhole configuration so that resolution is simultaneously limited by photon-counting statistics and pinhole geometry. The pinhole used is one-dimensional and is fabricated by inserting uranium shims with hyperbolic curved edges between two 5-cm-thick lead blocks. The loss of spatial resolution due to the x-ray transmission through the perimeter of the pinhole is calculated and a streak photograph of a Gamble I pinched beam interacting with a brass anode is presented

  20. Linear stability of optimal streaks in the log-layer of turbulent channel flows

    Science.gov (United States)

    Alizard, Frédéric

    2015-10-01

    The importance of secondary instability of streaks for the generation of vortical structures attached to the wall in the logarithmic region of turbulent channels is studied. The streaks and their linear instability are computed by solving equations associated with the organized motion that include an eddy-viscosity modeling the effect of incoherent fluctuations. Three friction Reynolds numbers, Reτ = 2000, 3000, and 5000, are investigated. For all flow cases, optimal streamwise vortices (i.e., having the highest potential for linear transient energy amplification) are used as initial conditions. Due to the lift-up mechanism, these optimal perturbations lead to the nonlinear growth of streaks. Based on a Floquet theory along the spanwise direction, we observe the onset of streak secondary instability for a wide range of spanwise wavelengths when the streak amplitude exceeds a critical value. Under neutral conditions, it is shown that streak instability modes have their energy mainly concentrated in the overlap layer and propagate with a phase velocity equal to the mean streamwise velocity of the log-layer. These neutral log-layer modes exhibit a sinuous pattern and have characteristic sizes that are proportional to the wall distance in both streamwise and spanwise directions, in agreement with the Townsend's attached eddy hypothesis (A. Townsend, the structure of turbulent shear flow, Cambridge university press, 1976 2nd edition). In particular, for a distance from the wall varying from y+ ≈ 100 (in wall units) to y ≈ 0.3h, where h is half the height of the channel, the neutral log-layer modes are self-similar with a spanwise width of λz ≈ y/0.3 and a streamwise length of λx ≈ 3λz, independently of the Reynolds number. Based on this observation, it is suggested that compact vortical structures attached to the wall can be ascribed to streak secondary instabilities. In addition, spatial distributions of fluctuating vorticity components show that the onset

  1. Performance of Laser Megajoule’s x-ray streak camera

    Energy Technology Data Exchange (ETDEWEB)

    Zuber, C., E-mail: celine.zuber@cea.fr; Bazzoli, S.; Brunel, P.; Burillo, M.; Gontier, D.; Moreau, I.; Oudot, G.; Rubbelynck, C.; Soullié, G.; Stemmler, P.; Trosseille, C. [CEA, DAM, DIF, F-91297 Arpajon (France); Fronty, J. P.; Goulmy, C. [Photonis France SAS, Avenue Roger Roncier, BP 520, 19106 Brive Cedex (France)

    2016-11-15

    A prototype of a picosecond x-ray streak camera has been developed and tested by Commissariat à l’Énergie Atomique et aux Énergies Alternatives to provide plasma-diagnostic support for the Laser Megajoule. We report on the measured performance of this streak camera, which almost fulfills the requirements: 50-μm spatial resolution over a 15-mm field in the photocathode plane, 17-ps temporal resolution in a 2-ns timebase, a detection threshold lower than 625 nJ/cm{sup 2} in the 0.05–15 keV spectral range, and a dynamic range greater than 100.

  2. C.C.D. Readout Of A Picosecond Streak Camera With An Intensified C.C.D.

    Science.gov (United States)

    Lemonier, M.; Richard, J. C.; Cavailler, C.; Mens, A.; Raze, G.

    1985-02-01

    This paper deals with a digital streak camera readout device. The device consists in a low light level television camera made of a solid state C.C.D. array coupled to an image intensifier associated to a video-digitizer coupled to a micro-computer system. The streak camera images are picked-up as a video signal, digitized and stored. This system allows the fast recording and the automatic processing of the data provided by the streak tube. Starting from the output screen of the streak camera, the constitutive elements are : - A fiber optic taper (A.O. Scientific Instruments) set in contact with the fiber optic output window of the streak tube achieves the image demagnification ; - A double proximity focused image intensifier (RTC - XX1410 SP) achieves the bright-ness amplification without any distortion ; - A second fiber optic taper achieves the dimensional matching between intensifier output and C.C.D. sensitive area ;

  3. Efficient inoculation of rice black-streaked dwarf virus to maize using Laodelphax striatellus Fallen

    Science.gov (United States)

    Maize rough dwarf disease (MRDD) caused by Rice black-streaked dwarf virus (RBSDV) is the most important viral disease of maize in China. Although deploying disease resistant hybrids would be the most effective way to control the disease, development of resistant hybrids has been limited by virus t...

  4. Optical Comb Generation for Streak Camera Calibration for Inertial Confinement Fusion Experiments

    International Nuclear Information System (INIS)

    Ronald Justin; Terence Davies; Frans Janson; Bruce Marshall; Perry Bell; Daniel Kalantar; Joseph Kimbrough; Stephen Vernon; Oliver Sweningsen

    2008-01-01

    The National Ignition Facility (NIF) at Lawrence Livermore National Laboratory (LLNL) is coming on-line to support physics experimentation for the U.S. Department of Energy (DOE) programs in Inertial Confinement Fusion (ICF) and Stockpile Stewardship (SS). Optical streak cameras are an integral part of the experimental diagnostics instrumentation at NIF. To accurately reduce streak camera data a highly accurate temporal calibration is required. This article describes a technique for simultaneously generating a precise +/- 2 ps optical marker pulse (fiducial reference) and trains of precisely timed, short-duration optical pulses (so-called 'comb' pulse trains) that are suitable for the timing calibrations. These optical pulse generators are used with the LLNL optical streak cameras. They are small, portable light sources that, in the comb mode, produce a series of temporally short, uniformly spaced optical pulses, using a laser diode source. Comb generators have been produced with pulse-train repetition rates up to 10 GHz at 780 nm, and somewhat lower frequencies at 664 nm. Individual pulses can be as short as 25-ps FWHM. Signal output is via a fiber-optic connector on the front panel of the generator box. The optical signal is transported from comb generator to streak camera through multi-mode, graded-index optical fiber

  5. Evaluation of banana hybrids for tolerance to black leaf streak (Mycosphaerella fijiensis Morelet) in Puerto Rico

    Science.gov (United States)

    In Puerto Rico, bananas (including plantains) are important agricultural commodities; their combined production totaled 133,500 tons in 2008. Black leaf streak (BLS) and Sigatoka leaf spot diseases, caused by Mycosphaerella fijiensis and M. musicola, respectively, are responsible for significant los...

  6. Characteristics of the alarm calls of buff-streaked chat groups and ...

    African Journals Online (AJOL)

    Many animals emit alarm calls in response to a potential predator. These calls may transmit information about predator type and response urgency. This study compared the alarm calls of the social buff-streaked chat, Oenanthe bifasciata, to the asocial African stonechat, Saxicola torquata. Spring traps were used to capture ...

  7. Fluorescence decay times of indigo-derivatives measured by means of a synchroscan streak camera

    Science.gov (United States)

    Lill, E.; Hefferle, P.; Schneider, S.; Dörr, F.

    1980-06-01

    Employing a synchronously pumped, modelocked dye laser for excitation in connection with a commercial, continuously operated streak camera the solvent dependent fluorescence decaytimes of several indigo-derivatives exhibiting a low fluorescence quantum efficiency were determined with a temporal resolution of about 5 ps in order to further elucidate their energy relaxation mechanisms, which are the object of continuous controversy.

  8. Correct patterning of the primitive streak requires the anterior visceral endoderm.

    Directory of Open Access Journals (Sweden)

    Daniel W Stuckey

    2011-03-01

    Full Text Available Anterior-posterior axis specification in the mouse requires signalling from a specialised extra-embryonic tissue called the anterior visceral endoderm (AVE. AVE precursors are induced at the distal tip of the embryo and move to the prospective anterior. Embryological and genetic analysis has demonstrated that the AVE is required for anterior patterning and for correctly positioning the site of primitive streak formation by inhibiting Nodal activity. We have carried out a genetic ablation of the Hex-expressing cells of the AVE (Hex-AVE by knocking the Diphtheria toxin subunit A into the Hex locus in an inducible manner. Using this model we have identified that, in addition to its requirement in the anterior of the embryo, the Hex-AVE sub-population has a novel role between 5.5 and 6.5dpc in patterning the primitive streak. Embryos lacking the Hex-AVE display delayed initiation of primitive streak formation and miss-patterning of the anterior primitive streak. We demonstrate that in the absence of the Hex-AVE the restriction of Bmp2 expression to the proximal visceral endoderm is also defective and expression of Wnt3 and Nodal is not correctly restricted to the posterior epiblast. These results, coupled with the observation that reducing Nodal signalling in Hex-AVE ablated embryos increases the frequency of phenotypes observed, suggests that these primitive streak patterning defects are due to defective Nodal signalling. Together, our experiments demonstrate that the AVE is not only required for anterior patterning, but also that specific sub-populations of this tissue are required to pattern the posterior of the embryo.

  9. Improving the off-axis spatial resolution and dynamic range of the NIF X-ray streak cameras (invited).

    Science.gov (United States)

    MacPhee, A G; Dymoke-Bradshaw, A K L; Hares, J D; Hassett, J; Hatch, B W; Meadowcroft, A L; Bell, P M; Bradley, D K; Datte, P S; Landen, O L; Palmer, N E; Piston, K W; Rekow, V V; Hilsabeck, T J; Kilkenny, J D

    2016-11-01

    We report simulations and experiments that demonstrate an increase in spatial resolution of the NIF core diagnostic x-ray streak cameras by at least a factor of two, especially off axis. A design was achieved by using a corrector electron optic to flatten the field curvature at the detector plane and corroborated by measurement. In addition, particle in cell simulations were performed to identify the regions in the streak camera that contribute the most to space charge blurring. These simulations provide a tool for convolving synthetic pre-shot spectra with the instrument function so signal levels can be set to maximize dynamic range for the relevant part of the streak record.

  10. A Demographic Model to Evaluate Population Declines in the Endangered Streaked Horned Lark

    Directory of Open Access Journals (Sweden)

    Alaine F. Camfield

    2011-12-01

    Full Text Available The Streaked Horned Lark (Eremophila alpestris strigata is listed as endangered by the State of Washington, USA and by Canada under the Species at Risk Act and is also classified as a federal candidate for listing under the Endangered Species Act in the USA. A substantial portion of Streaked Horned Lark habitat has been lost or degraded, and range contraction has occurred in Oregon, Washington, and British Columbia. We estimate the vital rates (fecundity, adult and juvenile survival and population growth rate (λ for Streaked Horned Larks breeding in Washington, USA and conduct a Life-Stage Simulation Analysis (LSA to evaluate which vital rate has the greatest influence on λ. We simulated changes in the three vital rates to examine how much they would need to be adjusted either independently or in concert to achieve a stable Streaked Horned Lark population (λ = 1. We also evaluated which fecundity component (the number of fledglings per egg laid or renesting interval had the greatest impact on λ. The estimate of population growth suggests that Streaked Horned Larks in Washington are declining rapidly (λ = 0.62 ± 0.10 and that local breeding sites are not sustainable without immigration. The LSA results indicate that adult survival had the greatest influence on λ, followed by juvenile survival and fecundity. However, increases in vital rates led to λ = 1 only when adult survival was raised from 0.47 to 0.85, juvenile survival from 0.17 to 0.58, and fecundity from 0.91 to 3.09. Increases in breeding success and decreases in the renesting interval influenced λ similarly; however, λ did not reach 1 even when breeding success was raised to 100% or renesting intervals were reduced to 1 day. Only when all three vital rates were increased simultaneously did λ approach 1 without requiring highly unrealistic increases in each vital rate. We conclude that conservation activities need to target all or multiple vital rates to be successful. The

  11. Wheat streak mosaic virus coat protein is a host-specific long-distance transport determinant in oat

    Science.gov (United States)

    Viral determinants involved in systemic infection of hosts by monocot-infecting plant viruses are poorly understood. Wheat streak mosaic virus (WSMV, genus Tritimovirus, family Potyviridae) exclusively infects monocotyledonous crops such as wheat, oat, barley, maize, triticale, and rye. Previously, ...

  12. Motion Streaks Do Not Influence the Perceived Position of Stationary Flashed Objects

    Directory of Open Access Journals (Sweden)

    Andrea Pavan

    2012-01-01

    Full Text Available In the present study, we investigated whether motion streaks, produced by fast moving dots Geisler 1999, distort the positional map of stationary flashed objects producing the well-known motion-induced position shift illusion (MIPS. The illusion relies on motion-processing mechanisms that induce local distortions in the positional map of the stimulus which is derived by shape-processing mechanisms. To measure the MIPS, two horizontally offset Gaussian blobs, placed above and below a central fixation point, were flashed over two fields of dots moving in opposite directions. Subjects judged the position of the top Gaussian blob relative to the bottom one. The results showed that neither fast (motion streaks nor slow moving dots influenced the perceived spatial position of the stationary flashed objects, suggesting that background motion does not interact with the shape-processing mechanisms involved in MIPS.

  13. Upgrades to the VISAR-streaked optical pyrometer (SOP) system on NIF

    Science.gov (United States)

    Manuel, A. M.; Millot, M.; Seppala, L. G.; Frieders, G.; Zeid, Z.; Christensen, K.; Celliers, P. M.

    2015-08-01

    The Velocity Interferometer System for Any Reflector (VISAR) is a critical diagnostic in Inertial Confinement Fusion and High Energy Density research as it has the ability to track shock fronts or interfaces moving 0.1-100 km/s with great accuracy. At the National Ignition Facility (NIF), the VISAR has recently been used successfully for implosion tuning and equation of state measurements. However, the initial design of the companion Streaked Optical Pyrometer (SOP) to measure spectral radiance - hence shock temperature - suffers from large background levels and poor spatial resolution. We report on an upgrade to improve the spatial resolution in the 560-640nm band by using custom lenses and replacing the Dove prism with a K-mirror and implementing a gating-circuit for the streak camera to reduce background signal. We envision that upgraded SOP will provide high quality data collection matching NIF VISAR's standards.

  14. Cassava brown streak disease in Rwanda, the associated viruses and disease phenotypes.

    Science.gov (United States)

    Munganyinka, E; Ateka, E M; Kihurani, A W; Kanyange, M C; Tairo, F; Sseruwagi, P; Ndunguru, J

    2018-02-01

    Cassava brown streak disease (CBSD) was first observed on cassava ( Manihot esculenta ) in Rwanda in 2009. In 2014 eight major cassava-growing districts in the country were surveyed to determine the distribution and variability of symptom phenotypes associated with CBSD, and the genetic diversity of cassava brown streak viruses. Distribution of the CBSD symptom phenotypes and their combinations varied greatly between districts, cultivars and their associated viruses. The symptoms on leaf alone recorded the highest (32.2%) incidence, followed by roots (25.7%), leaf + stem (20.3%), leaf + root (10.4%), leaf + stem + root (5.2%), stem + root (3.7%), and stem (2.5%) symptoms. Analysis by RT-PCR showed that single infections of Ugandan cassava brown streak virus (UCBSV) were most common (74.2% of total infections) and associated with all the seven phenotypes studied. Single infections of Cassava brown streak virus (CBSV) were predominant (15.3% of total infections) in CBSD-affected plants showing symptoms on stems alone. Mixed infections (CBSV + UCBSV) comprised 10.5% of total infections and predominated in the combinations of leaf + stem + root phenotypes. Phylogenetic analysis and the estimates of evolutionary divergence, using partial sequences (210 nt) of the coat protein gene, revealed that in Rwanda there is one type of CBSV and an indication of diverse UCBSV. This study is the first to report the occurrence and distribution of both CBSV and UCBSV based on molecular techniques in Rwanda.

  15. Instability of streaks in pipe flow of shear-thinning fluids.

    Science.gov (United States)

    López Carranza, S N; Jenny, M; Nouar, C

    2013-08-01

    This study is motivated by recent experimental results dealing with the transition to turbulence in a pipe flow of shear-thinning fluids, where a streaky flow with an azimuthal wave number n=1 is observed in the transitional regime. Here, a linear stability analysis of pipe flow of shear-thinning fluids modulated azimuthally by finite amplitude streaks is performed. The shear-thinning behavior of the fluid is described by the Carreau model. The streaky base flows considered are obtained from two-dimensional direct numerical simulation using finite amplitude longitudinal rolls as the initial condition and by extracting the velocity field at time t(max), where the amplitude of the streaks reaches its maximum, denoted by A(max). It is found that the amplitude A(max) increases with increasing Reynolds number as well as with increasing amplitude E(0) of the initial longitudinal rolls. For sufficiently large streaks amplitude, streamwise velocity profiles develop inflection points, leading to instabilities. Depending on the threshold amplitude A(c), two different modes may trigger the instability of the streaks. If A(c) exceeds approximately 41.5% of the centerline velocity, the instability mode is located near the axis of the pipe, i.e., it is a "center mode." For weaker amplitude A(c), the instability mode is located near the pipe wall, in the region of highest wall normal shear, i.e., it is a "wall mode." The threshold amplitude A(c) decreases with increasing shear-thinning effects. The energy equation analysis indicates that (i) wall modes are driven mainly by the work of the Reynolds stress against the wall normal shear and (ii) for center modes, the contribution of the normal wall shear remains dominant; however, it is noted that the contribution of the Reynolds stress against the azimuthal shear increases with increasing shear-thinning effects.

  16. Changes Over a Martian Year -- New Dark Slope Streaks in Lycus Sucli

    Science.gov (United States)

    2001-01-01

    Now in its Extended Mission, Mars Global Surveyor (MGS) is into its second Mars year of systematic observations of the red planet. With the Extended Mission slated to run through April 2002, the Mars Orbiter Camera (MOC) is being used, among other things, to look for changes that have occurred in the past martian year. Because Mars is farther from the Sun than Earth, its year is longer--about 687 Earth days.The two pictures shown here cover the same portion of Lycus Sulci, a rugged, ridged terrain north of the giant Olympus Mons volcano. The interval between the pictures span 92% of a martian year (August 2, 1999 to April 27, 2001). Dark streaks considered to result from the avalanching of dry, fine, bright dust are seen in both images. The disruption of the surface by the avalanching materials is thought to cause them to appear darker than their surroundings, just as the 1997 bouncing of Mars Pathfinder's airbags and the tire tracks made by the Sojourner rover left darkened markings indicating where the martian soil had been disrupted and disturbed. The arrows in the April 2001 picture indicate eight new streaks that formed on these slopes in Lycus Sulci since August 1999. These observations suggest that a new streak forms approximately once per martian year per kilometer (about 0.62 miles) along a slope.In both images, north is toward the top/upper right and sunlight illuminates each from the left. Dark (as well bright) slope streaks are most common in the dust-covered martian regions of Tharsis, Arabia, and Elysium.

  17. P 600/650 X-ray streak camera with optimized spatio-temporal resolution

    International Nuclear Information System (INIS)

    Boutry, B.; Cavailler, C.; Fleurot, N.

    1982-07-01

    This paper presents the latest performances of the P 600 X-ray streak camera designed for laser fusion experiments. It reaches very high performances in the 1.5 to 10 keV range: 16 to 20 pl.mm -1 for the maximum sweep speed which corresponds to a 2 ps theoretical time resolution. We discuss its adaptation to the soft X-ray spectral range down to 100 eV

  18. Molecular characterization of Banana streak virus isolate from Musa Acuminata in China.

    Science.gov (United States)

    Zhuang, Jun; Wang, Jian-Hua; Zhang, Xin; Liu, Zhi-Xin

    2011-12-01

    Banana streak virus (BSV), a member of genus Badnavirus, is a causal agent of banana streak disease throughout the world. The genetic diversity of BSVs from different regions of banana plantations has previously been investigated, but there are relatively few reports of the genetic characteristic of episomal (non-integrated) BSV genomes isolated from China. Here, the complete genome, a total of 7722bp (GenBank accession number DQ092436), of an isolate of Banana streak virus (BSV) on cultivar Cavendish (BSAcYNV) in Yunnan, China was determined. The genome organises in the typical manner of badnaviruses. The intergenic region of genomic DNA contains a large stem-loop, which may contribute to the ribosome shift into the following open reading frames (ORFs). The coding region of BSAcYNV consists of three overlapping ORFs, ORF1 with a non-AUG start codon and ORF2 encoding two small proteins are individually involved in viral movement and ORF3 encodes a polyprotein. Besides the complete genome, a defective genome lacking the whole RNA leader region and a majority of ORF1 and which encompasses 6525bp was also isolated and sequenced from this BSV DNA reservoir in infected banana plants. Sequence analyses showed that BSAcYNV has closest similarity in terms of genome organization and the coding assignments with an BSV isolate from Vietnam (BSAcVNV). The corresponding coding regions shared identities of 88% and -95% at nucleotide and amino acid levels, respectively. Phylogenetic analysis also indicated BSAcYNV shared the closest geographical evolutionary relationship to BSAcVNV among sequenced banana streak badnaviruses.

  19. Instability of streaks in pipe flow of shear-thinning fluids

    Science.gov (United States)

    López Carranza, S. N.; Jenny, M.; Nouar, C.

    2013-08-01

    This study is motivated by recent experimental results dealing with the transition to turbulence in a pipe flow of shear-thinning fluids, where a streaky flow with an azimuthal wave number n=1 is observed in the transitional regime. Here, a linear stability analysis of pipe flow of shear-thinning fluids modulated azimuthally by finite amplitude streaks is performed. The shear-thinning behavior of the fluid is described by the Carreau model. The streaky base flows considered are obtained from two-dimensional direct numerical simulation using finite amplitude longitudinal rolls as the initial condition and by extracting the velocity field at time tmax, where the amplitude of the streaks reaches its maximum, denoted by Amax. It is found that the amplitude Amax increases with increasing Reynolds number as well as with increasing amplitude E0 of the initial longitudinal rolls. For sufficiently large streaks amplitude, streamwise velocity profiles develop inflection points, leading to instabilities. Depending on the threshold amplitude Ac, two different modes may trigger the instability of the streaks. If Ac exceeds approximately 41.5% of the centerline velocity, the instability mode is located near the axis of the pipe, i.e., it is a “center mode.” For weaker amplitude Ac, the instability mode is located near the pipe wall, in the region of highest wall normal shear, i.e., it is a “wall mode.” The threshold amplitude Ac decreases with increasing shear-thinning effects. The energy equation analysis indicates that (i) wall modes are driven mainly by the work of the Reynolds stress against the wall normal shear and (ii) for center modes, the contribution of the normal wall shear remains dominant; however, it is noted that the contribution of the Reynolds stress against the azimuthal shear increases with increasing shear-thinning effects.

  20. Cassava brown streak disease and the sustainability of a clean seed system.

    OpenAIRE

    McQuaid, CF; Sseruwagi, P; Pariyo, A; van den Bosch, F

    2015-01-01

    One method of reducing disease in crops is the dissemination of disease-free planting material from a multiplication site to growers. This study assesses the validity and sustainability of this method for cassava brown streak disease, a threat to cassava crops across East Africa. Using mathematical modelling, the effects of different environmental and control conditions on pathogen spread were determined in a single-field multiplication site. High disease pressure, through large vector popula...

  1. Cassava brown streak disease and the sustainability of a clean seed system

    OpenAIRE

    McQuaid, C. F.; Sseruwagi, P.; Pariyo, A.; van den Bosch, F.

    2015-01-01

    One method of reducing disease in crops is the dissemination of disease?free planting material from a multiplication site to growers. This study assesses the validity and sustainability of this method for cassava brown streak disease, a threat to cassava crops across East Africa. Using mathematical modelling, the effects of different environmental and control conditions on pathogen spread were determined in a single?field multiplication site. High disease pressure, through large vector popula...

  2. High temporal resolution and streak-free four-dimensional cone-beam computed tomography

    International Nuclear Information System (INIS)

    Leng Shuai; Tang Jie; Zambelli, Joseph; Nett, Brian; Chen Guanghong; Tolakanahalli, Ranjini

    2008-01-01

    Cone-beam computed tomography (CBCT) has been clinically used to verify patient position and to localize the target of treatment in image-guided radiation therapy (IGRT). However, when the chest and the upper abdomen are scanned, respiratory-induced motion blurring limits the utility of CBCT. In order to mitigate this blurring, respiratory-gated CBCT, i.e. 4D CBCT, was introduced. In 4D CBCT, the cone-beam projection data sets acquired during a gantry rotation are sorted into several respiratory phases. In these gated reconstructions, the number of projections for each respiratory phase is significantly reduced. Consequently, undersampling streaking artifacts are present in the reconstructed images, and the image contrast resolution is also significantly compromised. In this paper, we present a new method to simultaneously achieve both high temporal resolution (∼100 ms) and streaking artifact-free image volumes in 4D CBCT. The enabling technique is a newly proposed image reconstruction method, i.e. prior image constrained compressed sensing (PICCS), which enables accurate image reconstruction using vastly undersampled cone-beam projections and a fully sampled prior image. Using PICCS, a streak-free image can be reconstructed from 10-20 cone-beam projections while the signal-to-noise ratio is determined by a denoising feature of the selected objective function and by the prior image, which is reconstructed using all of the acquired cone-beam projections. This feature of PICCS breaks the connection between the temporal resolution and streaking artifacts' level in 4D CBCT. Numerical simulations and experimental phantom studies have been conducted to validate the method.

  3. Ultrafast streak and framing technique for the observation of laser driven shock waves in transparent solid targets

    International Nuclear Information System (INIS)

    Van Kessel, C.G.M.; Sachsenmaier, P.; Sigel, R.

    1975-01-01

    Shock waves driven by laser ablation in plane transparent plexiglass and solid hydrogen targets have been observed with streak and framing techniques using a high speed image converter camera, and a dye laser as a light source. The framing pictures have been made by mode locking the dye laser and using a wide streak slit. In both materials a growing hemispherical shock wave is observed with the maximum velocity at the onset of laser radiation. (author)

  4. A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus

    OpenAIRE

    Amuge, T.; Berger, D. K.; Katari, M. S.; Myburg, A. A.; Goldman, S. L.; Ferguson, M. E.

    2017-01-01

    A time-course transcriptome analysis of two cassava varieties that are either resistant or susceptible to cassava brown streak disease (CBSD) was conducted using RNASeq, after graft inoculation with Ugandan cassava brown streak virus (UCBSV). From approximately 1.92 billion short reads, the largest number of differentially expressed genes (DEGs) was obtained in the resistant (Namikonga) variety at 2 days after grafting (dag) (3887 DEGs) and 5 dag (4911 DEGs). At the same time points, several ...

  5. Transitional features in human atherosclerosis. Intimal thickening, cholesterol clefts, and cell loss in human aortic fatty streaks.

    OpenAIRE

    Guyton, J. R.; Klemp, K. F.

    1993-01-01

    The possible transition from a subset of fatty streaks to fibrous plaques in human atherosclerosis has long been postulated, but transitional features in lesions have rarely been demonstrated. We examined human aortic fatty streaks to determine whether significant tendencies toward intimal thickening and toward deep extracellular lipid deposition might be found. To provide accurate ultrastructural assessment of lipid, tissues were processed by new electron microscopic cytochemical techniques....

  6. Precise measurement of a subpicosecond electron single bunch by the femtosecond streak camera

    International Nuclear Information System (INIS)

    Uesaka, M.; Ueda, T.; Kozawa, T.; Kobayashi, T.

    1998-01-01

    Precise measurement of a subpicosecond electron single bunch by the femtosecond streak camera is presented. The subpicosecond electron single bunch of energy 35 MeV was generated by the achromatic magnetic pulse compressor at the S-band linear accelerator of nuclear engineering research laboratory (NERL), University of Tokyo. The electric charge per bunch and beam size are 0.5 nC and the horizontal and vertical beam sizes are 3.3 and 5.5 mm (full width at half maximum; FWHM), respectively. Pulse shape of the electron single bunch is measured via Cherenkov radiation emitted in air by the femtosecond streak camera. Optical parameters of the optical measurement system were optimized based on much experiment and numerical analysis in order to achieve a subpicosecond time resolution. By using the optimized optical measurement system, the subpicosecond pulse shape, its variation for the differents rf phases in the accelerating tube, the jitter of the total system and the correlation between measured streak images and calculated longitudinal phase space distributions were precisely evaluated. This measurement system is going to be utilized in several subpicosecond analyses for radiation physics and chemistry. (orig.)

  7. Optical fiducial timing system for X-ray streak cameras with aluminum coated optical fiber ends

    Science.gov (United States)

    Nilson, David G.; Campbell, E. Michael; MacGowan, Brian J.; Medecki, Hector

    1988-01-01

    An optical fiducial timing system is provided for use with interdependent groups of X-ray streak cameras (18). The aluminum coated (80) ends of optical fibers (78) are positioned with the photocathodes (20, 60, 70) of the X-ray streak cameras (18). The other ends of the optical fibers (78) are placed together in a bundled array (90). A fiducial optical signal (96), that is comprised of 2.omega. or 1.omega. laser light, after introduction to the bundled array (90), travels to the aluminum coated (82) optical fiber ends and ejects quantities of electrons (84) that are recorded on the data recording media (52) of the X-ray streak cameras (18). Since both 2.omega. and 1.omega. laser light can travel long distances in optical fiber with only a slight attenuation, the initial arial power density of the fiducial optical signal (96) is well below the damage threshold of the fused silica or other material that comprises the optical fibers (78, 90). Thus the fiducial timing system can be repeatably used over long durations of time.

  8. Signal-to-noise performance analysis of streak tube imaging lidar systems. I. Cascaded model.

    Science.gov (United States)

    Yang, Hongru; Wu, Lei; Wang, Xiaopeng; Chen, Chao; Yu, Bing; Yang, Bin; Yuan, Liang; Wu, Lipeng; Xue, Zhanli; Li, Gaoping; Wu, Baoning

    2012-12-20

    Streak tube imaging lidar (STIL) is an active imaging system using a pulsed laser transmitter and a streak tube receiver to produce 3D range and intensity imagery. The STIL has recently attracted a great deal of interest and attention due to its advantages of wide azimuth field-of-view, high range and angle resolution, and high frame rate. This work investigates the signal-to-noise performance of STIL systems. A theoretical model for characterizing the signal-to-noise performance of the STIL system with an internal or external intensified streak tube receiver is presented, based on the linear cascaded systems theory of signal and noise propagation. The STIL system is decomposed into a series of cascaded imaging chains whose signal and noise transfer properties are described by the general (or the spatial-frequency dependent) noise factors (NFs). Expressions for the general NFs of the cascaded chains (or the main components) in the STIL system are derived. The work presented here is useful for the design and evaluation of STIL systems.

  9. Genetic Analysis of Streaked and Abnormal Floret Mutant st-fon

    Directory of Open Access Journals (Sweden)

    De-xi CHEN

    2013-07-01

    Full Text Available A double mutant with streaked leaf and abnormal floret was found and temporarily named streaked leaf and floral organ number mutant (st-fon. For this mutant, besides white streak appeared on culm, leaves and panicles, the number of floral organs increased and florets cracked. The extreme phenotype was that several small florets grew from one floret or branch rachis in small florets extended and developed into panicles. By using transmission electron microscope to observe the ultrastructure of white histocytes of leaves at the seedling stage, the white tissues which showed abnormal plastids, lamellas and thylakoids could not develop into normal chloroplast, and the development of chloroplast was blocked at the early growth stage of plastid. Scanning electron microscope and paraffin section were also used to observe the development of floral organs, and the results indicated that the development of floral meristem was out of order and unlimited, whereas in the twisty leaves, vascular bundle sheath cells grew excessively, or some bubbly cells increased. Genetic analyses carried out by means of cross and backcross with four normal-leaf-color materials revealed that the mutant is of cytoplasm inheritance.

  10. Inception of Klebanoff streaks and large-scale motions in transitional and fully turbulent boundary layers

    Science.gov (United States)

    Lee, Jin; Zaki, Tamer

    2017-11-01

    Transitional boundary layers feature long coherent motions of streamwise velocity fluctuation, u', in both the laminar and turbulent regions. In the former, Klebanoff streaks amplify and become seats for breakdown to turbulence. In the fully turbulent region, large-scale motions contribute appreciably to the turbulence energy and shear stresses. Direct numerical simulation (DNS) of boundary-layer bypass transition over a flat plate with a leading edge is performed. Instantaneous realizations of spatially and temporally resolved fields are stored in a database. Structure identification techniques are used to identify these coherent flow structures. The inception rate, lifetime and amplification rate of Klebanoff streaks are evaluated in the laminar region, and conditional averaging is used to examine the early stages of streak formation. Structure identification and tracking is also used to study the inception of large-scale coherent motion in the nascent turbulent spots and fully turbulent boundary layer downstream. This work has been partially supported by the National Science Foundation (NSF, Grant 1605404). The computations were performed using the Extreme Science and Engineering Discovery Environment (XSEDE), which is supported by NSF (Grant ACI-1053575).

  11. NO-β-catenin crosstalk modulates primitive streak formation prior to embryonic stem cell osteogenic differentiation.

    Science.gov (United States)

    Ding, Huawen; Keller, Kevin C; Martinez, Ivann K C; Geransar, Rose M; zur Nieden, Kai O; Nishikawa, Sandra G; Rancourt, Derrick E; zur Nieden, Nicole I

    2012-11-15

    Nitric oxide (NO) has been shown to play a crucial role in bone formation in vivo. We sought to determine the temporal effect of NO on murine embryonic stem cells (ESCs) under culture conditions that promote osteogenesis. Expression profiles of NO pathway members and osteoblast-specific markers were analyzed using appropriate assays. We found that NO was supportive of osteogenesis specifically during an early phase of in vitro development (days 3-5). Furthermore, ESCs stably overexpressing the inducible NO synthase showed accelerated and enhanced osteogenesis in vitro and in bone explant cultures. To determine the role of NO in early lineage commitment, a stage in ESC differentiation equivalent to primitive streak formation in vivo, ESCs were transfected with a T-brachyury-GFP reporter. Expression levels of T-brachyury and one of its upstream regulators, β-catenin, the major effector in the canonical Wnt pathway, were responsive to NO levels in differentiating primitive streak-like cells. Our results indicate that NO may be involved in early differentiation through regulation of β-catenin and T-brachyury, controlling the specification of primitive-streak-like cells, which may continue through differentiation to later become osteoblasts.

  12. Development of a Data Reduction Algorithm for Optical Wide Field Patrol (OWL) II: Improving Measurement of Lengths of Detected Streaks

    Science.gov (United States)

    Park, Sun-Youp; Choi, Jin; Roh, Dong-Goo; Park, Maru; Jo, Jung Hyun; Yim, Hong-Suh; Park, Young-Sik; Bae, Young-Ho; Park, Jang-Hyun; Moon, Hong-Kyu; Choi, Young-Jun; Cho, Sungki; Choi, Eun-Jung

    2016-09-01

    As described in the previous paper (Park et al. 2013), the detector subsystem of optical wide-field patrol (OWL) provides many observational data points of a single artificial satellite or space debris in the form of small streaks, using a chopper system and a time tagger. The position and the corresponding time data are matched assuming that the length of a streak on the CCD frame is proportional to the time duration of the exposure during which the chopper blades do not obscure the CCD window. In the previous study, however, the length was measured using the diagonal of the rectangle of the image area containing the streak; the results were quite ambiguous and inaccurate, allowing possible matching error of positions and time data. Furthermore, because only one (position, time) data point is created from one streak, the efficiency of the observation decreases. To define the length of a streak correctly, it is important to locate the endpoints of a streak. In this paper, a method using a differential convolution mask pattern is tested. This method can be used to obtain the positions where the pixel values are changed sharply. These endpoints can be regarded as directly detected positional data, and the number of data points is doubled by this result.

  13. Low Albedo Surfaces and Eolian Sediment: Mars Orbiter Camera Views of Western Arabia Terra Craters and Wind Streaks

    Science.gov (United States)

    Edgett, Kenneth S.

    2001-01-01

    High spatial resolution (1.5 to 12 m/pixel) Mars Global Surveyor Mars Orbiter Camera images obtained September 1997 through June 2001 indicate that the large, dark wind streaks of western Arabia Terra each originate at a barchan dune field on a crater floor. The streaks consist of a relatively thin coating of sediment deflated from the dune fields and their vicinity. This sediment drapes a previous mantle that more thickly covers nearly all of western Arabia Terra. No dunes or eolian bedforms are found within the dark wind streaks, nor do any of the intracrater dunes climb up crater walls to provide sand to the wind streaks. The relations between dunes, wind streak, and subjacent terrain imply that dark-toned grains finer than those which comprise the dunes are lifted into suspension and carried out of the craters to be deposited on the adjacent terrain. Such grains are most likely in the silt size range (3.9-62.5 micrometers). The streaks change in terms of extent, relative albedo, and surface pattern over periods measured in years, but very little evidence for recent eolian activity (dust plumes, storms, dune movement) has been observed.

  14. Streak-photographic investigation of shock wave emission after laser-induced plasma formation in water

    Science.gov (United States)

    Noack, Joachim; Vogel, Alfred

    1995-05-01

    The shock wave emission after dielectric breakdown in water was investigated to assess potential shock wave effects in plasma mediated tissue ablation and intraocular photodisruption. Of particular interest was the dependence of shock wave pressure as a function of distance from the plasma for different laser pulse energies. We have generated plasmas in water with a Nd:YAG laser system delivering pulses of 6 ns duration. The pulses, with energies between 0.4 and 36 mJ (approximately equals 180 times threshold), were focused into a cuvette containing distilled water. The shock wave was visualized with streak photography combined with a schlieren technique. An important advantage of this technique is that the shock position as a function of time can directly be obtained from a single streak and hence a single event. Other methods (e.g. flash photography or passage time measurements between fixed locations) in contrast rely on reproducible events. Using the shock wave speed obtained from the streak images, shock wave peak pressures were calculated providing detailed information on the propagation of the shock. The shock peak pressure as a function of distance r from the optical axis was found to decrease faster than 1/r2 in regions up to distances of 100-150 micrometers . For larger distances it was found to be roughly proportional to 1/r. The scaling law for maximum shock pressure p, at a given distance was found to be proportional to the square root of the laser pulse energy E for distances of 50-200 micrometers from the optical axis.

  15. Design of a streaked radiography instrument for ICF ablator tuning measurements

    International Nuclear Information System (INIS)

    Olson, R. E.; Geissel, M.; Kellogg, J. W.; Bennett, G. R.; Edens, A. D.; Atherton, B. W.; Leeper, R. J.; Hicks, D. G.; Spears, B. K.; Celliers, P. M.; Holder, J. P.; Landen, O. L.

    2008-01-01

    A streaked radiography diagnostic has been proposed as a technique to determine the ablator mass remaining in an inertial confinement fusion ignition capsule at peak velocity. This instrument, the 'HXRI-5', has been designed to fit within a National Ignition Facility Diagnostic Instrument Manipulator. The HXRI-5 will be built at Sandia National Laboratories (SNL), and initial testing will be done at the SNL Z-Beamlet Facility. In this paper, we will describe the National Ignition Campaign requirements for this diagnostic, the instrument design, and the planned test experiments.

  16. A sampling ultra-high-speed streak camera based on the use of a unique photomultiplier

    International Nuclear Information System (INIS)

    Marode, Emmanuel

    An apparatus reproducing the ''streak'' mode of a high-speed camera is proposed for the case of a slit AB whose variations in luminosity are repetitive. A photomultiplier, analysing the object AB point by point, and a still camera, photographing a slit fixed on the oscilloscope screen parallel to the sweep direction are placed on a mobile platform P. The movement of P assures a time-resolved analysis of AB. The resolution is of the order of 2.10 -9 s, and can be improved [fr

  17. Deflection system of a high-speed streak camera in the form of a delay line

    International Nuclear Information System (INIS)

    Korzhenevich, I.M.; Fel'dman, G.G.

    1993-01-01

    This paper presents an analysis of the operation of a meander deflection system, well-known in oscillography, when it is used to scan the image in a streak-camera tube. Effects that are specific to high-speed photography are considered. It is shown that such a deflection system imposes reduced requirements both on the steepness and on the duration of the linear leading edges of the pulses of the spark gaps that generate the sweep voltage. An example of the design of a meander deflection system whose sensitivity is a factor of two higher than for a conventional system is considered. 5 refs., 3 figs

  18. Binding constants of Southern rice black-streaked dwarf virus Coat Protein with ferulic acid derivatives

    Directory of Open Access Journals (Sweden)

    Longlu Ran

    2018-04-01

    Full Text Available The data present binding constants between ferulic acid derivatives and the Coat Protein (P10 by fluorescence titration in this article, which is hosted in the research article entitled “Interaction Research on an Antiviral Molecule that Targets the Coat Protein of Southern rice black-streaked dwarf virus’’ (Ran et al., 2017 [1]. The data include fluorescence quenching spectrum, Stern–Volmer quenching constants, and binding parameters. In this article, a more comprehensive data interpretation and analysis is explained.

  19. Loop-mediated Isothermal Amplification Assay to Rapidly Detect Wheat Streak Mosaic Virus in Quarantined Plants

    Directory of Open Access Journals (Sweden)

    Siwon Lee

    2015-12-01

    Full Text Available We developed a loop-mediated isothermal amplification (LAMP method to rapidly diagnose Wheat streak mosaic virus (WSMV during quarantine inspections of imported wheat, corn, oats, and millet. The LAMP method was developed as a plant quarantine inspection method for the first time, and its simplicity, quickness, specificity and sensitivity were verified compared to current reverse transcription-polymerase chain reaction (RT-PCR and nested PCR quarantine methods. We were able to quickly screen for WSMV at quarantine sites with many test samples; thus, this method is expected to contribute to plant quarantine inspections.

  20. Streaked optical pyrometer system for laser-driven shock-wave experiments on OMEGA.

    Science.gov (United States)

    Miller, J E; Boehly, T R; Melchior, A; Meyerhofer, D D; Celliers, P M; Eggert, J H; Hicks, D G; Sorce, C M; Oertel, J A; Emmel, P M

    2007-03-01

    The temperature of laser-driven shock waves is of interest to inertial confinement fusion and high-energy-density physics. We report on a streaked optical pyrometer that measures the self-emission of laser-driven shocks simultaneously with a velocity interferometer system for any reflector (VISAR). Together these diagnostics are used to obtain the temporally and spatially resolved temperatures of approximately megabar shocks driven by the OMEGA laser. We provide a brief description of the diagnostic and how it is used with VISAR. Key spectral calibration results are discussed and important characteristics of the recording system are presented.

  1. Commissioning of the advanced light source dual-axis streak camera

    International Nuclear Information System (INIS)

    Hinkson, J.; Keller, R.; Byrd, J.

    1997-05-01

    A dual-axis camera, Hamamatsu model C5680, has been installed on the Advanced Light Source photon-diagnostics beam-line to investigate electron-beam parameters. During its commissioning process, the camera has been used to measure single-bunch length vs. current, relative bunch charge in adjacent RF buckets, and bunchphase stability. In this paper the authors describe the visible-light branch of the diagnostics beam-line, the streak-camera installation, and the timing electronics. They will show graphical results of beam measurements taken during a variety of accelerator conditions

  2. Theoretical analysis of time delays and streaking effects in XUV photoionization

    OpenAIRE

    Su, Jing; Ni, Hongcheng; Becker, Andreas; Jaron-Becker, Agnieszka

    2013-01-01

    We apply a recently proposed theoretical concept and numerical approach to obtain time delays in extreme ultraviolet (XUV) photoionization of an electron in a short- or long-range potential. The results of our numerical simulations on a space-time grid are compared to those for the well-known Wigner-Smith time delay and different methods to obtain the latter time delay are reviewed. We further use our numerical method to analyze the effect of a near-infrared streaking field on the time delay ...

  3. Mapping the distribution of maize streak virus genotypes across the forest and transition zones of Ghana.

    Science.gov (United States)

    Oppong, Allen; Offei, Samuel K; Ofori, Kwadwo; Adu-Dapaah, Hans; Lamptey, Joseph N L; Kurenbach, Brigitta; Walters, Matthew; Shepherd, Dionne N; Martin, Darren P; Varsani, Arvind

    2015-02-01

    Throughout sub-Saharan Africa, maize streak virus strain A (MSV-A), the causal agent of maize streak disease (MSD), is an important biological constraint on maize production. In November/December 2010, an MSD survey was carried out in the forest and transition zones of Ghana in order to obtain MSV-A virulence sources for the development of MSD-resistant maize genotypes with agronomic properties suitable for these regions. In 79 well-distributed maize fields, the mean MSD incidence was 18.544 % and the symptom severity score was 2.956 (1 = no symptoms and 5 = extremely severe). We detected no correlation between these two variables. Phylogenetic analysis of cloned MSV-A isolates that were fully sequenced from samples collected in 51 of these fields, together with those sampled from various other parts of Africa, indicated that all of the Ghanaian isolates occurred within a broader cluster of West African isolates, all belonging to the highly virulent MSV-A1 subtype. Besides being the first report of a systematic MSV survey in Ghana, this study is the first to characterize the full-genome sequences of Ghanaian MSV isolates. The 51 genome sequences determined here will additionally be a valuable resource for the rational selection of representative MSV-A variant panels for MSD resistance screening.

  4. The Symptom and Genetic Diversity of Cassava Brown Streak Viruses Infecting Cassava in East Africa

    Directory of Open Access Journals (Sweden)

    I. U. Mohammed

    2012-01-01

    Full Text Available The genetic and symptom diversity of six virus isolates causing cassava brown streak disease (CBSD in the endemic (Kenya, Mozambique, and Tanzania and the recently affected epidemic areas (Uganda of eastern Africa was studied. Five cassava varieties; Albert, Colombian, Ebwanateraka, TMS60444 (all susceptible and Kiroba (tolerant were graft inoculated with each isolate. Based on a number of parameters including the severity of leaf and root symptoms, and the extent of virus transmission by grafting, the viruses were classified as either severe or relatively mild. These results were further confirmed by the mechanical inoculation of 13 herbaceous hosts in which the virulent isolates caused plant death in Nicotiana clevelandii and N. benthamiana whereas the milder isolates did not. Phylogenetic analysis of complete coat protein gene sequences of these isolates together with sequences obtained from 14 other field-collected samples from Kenya and Zanzibar, and reference sequences grouped them into two distinct clusters, representing the two species of cassava brown streak viruses. Put together, these results did not suggest the association of a hypervirulent form of the virus with the current CBSD epidemic in Uganda. Identification of the severe and milder isolates, however, has further implications for disease management and quarantine requirements.

  5. Role of heparanase on hepatic uptake of intestinal derived lipoprotein and fatty streak formation in mice.

    Directory of Open Access Journals (Sweden)

    David Planer

    Full Text Available BACKGROUND: Heparanase modulates the level of heparan sulfate proteoglycans (HSPGs which have an important role in multiple cellular processes. Recent studies indicate that HSPGs have an important function in hepatic lipoprotein handling and processes involving removal of lipoprotein particles. PRINCIPAL FINDINGS: To determine the effects of decreased HSPGs chain length on lipoprotein metabolism and atherosclerosis, transgenic mice over-expressing the human heparanase gene were studied. Hepatic lipid uptake in hpa-Tg mice were evaluated by giving transgenic mice oral fat loads and labeled retinol. Sections of aorta from mice over-expressing heparanase (hpa-Tg and controls (C57/BL6 fed an atherogenic diet were examined for evidence of atherosclerosis. Heparanase over-expression results in reduced hepatic clearance of postprandial lipoproteins and higher levels of fasting and postprandial serum triglycerides. Heparanase over-expression also induces formation of fatty streaks in the aorta. The mean lesion cross-sectional area in heparanase over-expressing mice was almost 6 times higher when compared to control mice (23,984 µm(2±5,922 vs. 4,189 µm(2±1,130, p<0.001. CONCLUSIONS: Over-expression of heparanase demonstrates the importance of HSPGs for the uptake of intestinal derived lipoproteins and its role in the formation of fatty streaks.

  6. Synchronization of streak and framing camera measurements of an intense relativistic electron beam propagating through gas

    International Nuclear Information System (INIS)

    Weidman, D.J.; Murphy, D.P.; Myers, M.C.; Meger, R.A.

    1994-01-01

    The expansion of the radius of a 5 MeV, 20 kA, 40 ns electron beam from SuperIBEX during propagation through gas is being measured. The beam is generated, conditions, equilibrated, and then passed through a thin foil that produces Cherenkov light, which is recorded by a streak camera. At a second location, the beam hits another Cherenkov emitter, which is viewed by a framing camera. Measurements at these two locations can provide a time-resolved measure of the beam expansion. The two measurements, however, must be synchronized with each other, because the beam radius is not constant throughout the pulse due to variations in beam current and energy. To correlate the timing of the two diagnostics, several shots have been taken with both diagnostics viewing Cherenkov light from the same foil. Experimental measurements of the Cherenkov light from one foil viewed by both diagnostics will be presented to demonstrate the feasibility of correlating the diagnostics with each other. Streak camera data showing the optical fiducial, as well as the final correlation of the two diagnostics, will also be presented. Preliminary beam radius measurements from Cherenkov light measured at two locations will be shown

  7. Automatic Reacquisition of Satellite Positions by Detecting Their Expected Streaks in Astronomical Images

    Science.gov (United States)

    Levesque, M.

    Artificial satellites, and particularly space junk, drift continuously from their known orbits. In the surveillance-of-space context, they must be observed frequently to ensure that the corresponding orbital parameter database entries are up-to-date. Autonomous ground-based optical systems are periodically tasked to observe these objects, calculate the difference between their predicted and real positions and update object orbital parameters. The real satellite positions are provided by the detection of the satellite streaks in the astronomical images specifically acquired for this purpose. This paper presents the image processing techniques used to detect and extract the satellite positions. The methodology includes several processing steps including: image background estimation and removal, star detection and removal, an iterative matched filter for streak detection, and finally false alarm rejection algorithms. This detection methodology is able to detect very faint objects. Simulated data were used to evaluate the methodology's performance and determine the sensitivity limits where the algorithm can perform detection without false alarm, which is essential to avoid corruption of the orbital parameter database.

  8. Absolute calibration of the OMEGA streaked optical pyrometer for temperature measurements of compressed materials.

    Science.gov (United States)

    Gregor, M C; Boni, R; Sorce, A; Kendrick, J; McCoy, C A; Polsin, D N; Boehly, T R; Celliers, P M; Collins, G W; Fratanduono, D E; Eggert, J H; Millot, M

    2016-11-01

    Experiments in high-energy-density physics often use optical pyrometry to determine temperatures of dynamically compressed materials. In combination with simultaneous shock-velocity and optical-reflectivity measurements using velocity interferometry, these experiments provide accurate equation-of-state data at extreme pressures (P > 1 Mbar) and temperatures (T > 0.5 eV). This paper reports on the absolute calibration of the streaked optical pyrometer (SOP) at the Omega Laser Facility. The wavelength-dependent system response was determined by measuring the optical emission from a National Institute of Standards and Technology-traceable tungsten-filament lamp through various narrowband (40-nm-wide) filters. The integrated signal over the SOP's ∼250-nm operating range is then related to that of a blackbody radiator using the calibrated response. We present a simple closed-form equation for the brightness temperature as a function of streak-camera signal derived from this calibration. Error estimates indicate that brightness temperature can be inferred to a precision of <5%.

  9. Absolute calibration of the OMEGA streaked optical pyrometer for temperature measurements of compressed materials

    Science.gov (United States)

    Gregor, M. C.; Boni, R.; Sorce, A.; Kendrick, J.; McCoy, C. A.; Polsin, D. N.; Boehly, T. R.; Celliers, P. M.; Collins, G. W.; Fratanduono, D. E.; Eggert, J. H.; Millot, M.

    2016-11-01

    Experiments in high-energy-density physics often use optical pyrometry to determine temperatures of dynamically compressed materials. In combination with simultaneous shock-velocity and optical-reflectivity measurements using velocity interferometry, these experiments provide accurate equation-of-state data at extreme pressures (P > 1 Mbar) and temperatures (T > 0.5 eV). This paper reports on the absolute calibration of the streaked optical pyrometer (SOP) at the Omega Laser Facility. The wavelength-dependent system response was determined by measuring the optical emission from a National Institute of Standards and Technology-traceable tungsten-filament lamp through various narrowband (40-nm-wide) filters. The integrated signal over the SOP's ˜250-nm operating range is then related to that of a blackbody radiator using the calibrated response. We present a simple closed-form equation for the brightness temperature as a function of streak-camera signal derived from this calibration. Error estimates indicate that brightness temperature can be inferred to a precision of <5%.

  10. Inactivation of the Huntington's disease gene (Hdh impairs anterior streak formation and early patterning of the mouse embryo

    Directory of Open Access Journals (Sweden)

    Conlon Ronald A

    2005-08-01

    Full Text Available Abstract Background Huntingtin, the HD gene encoded protein mutated by polyglutamine expansion in Huntington's disease, is required in extraembryonic tissues for proper gastrulation, implicating its activities in nutrition or patterning of the developing embryo. To test these possibilities, we have used whole mount in situ hybridization to examine embryonic patterning and morphogenesis in homozygous Hdhex4/5 huntingtin deficient embryos. Results In the absence of huntingtin, expression of nutritive genes appears normal but E7.0–7.5 embryos exhibit a unique combination of patterning defects. Notable are a shortened primitive streak, absence of a proper node and diminished production of anterior streak derivatives. Reduced Wnt3a, Tbx6 and Dll1 expression signify decreased paraxial mesoderm and reduced Otx2 expression and lack of headfolds denote a failure of head development. In addition, genes initially broadly expressed are not properly restricted to the posterior, as evidenced by the ectopic expression of Nodal, Fgf8 and Gsc in the epiblast and T (Brachyury and Evx1 in proximal mesoderm derivatives. Despite impaired posterior restriction and anterior streak deficits, overall anterior/posterior polarity is established. A single primitive streak forms and marker expression shows that the anterior epiblast and anterior visceral endoderm (AVE are specified. Conclusion Huntingtin is essential in the early patterning of the embryo for formation of the anterior region of the primitive streak, and for down-regulation of a subset of dynamic growth and transcription factor genes. These findings provide fundamental starting points for identifying the novel cellular and molecular activities of huntingtin in the extraembryonic tissues that govern normal anterior streak development. This knowledge may prove to be important for understanding the mechanism by which the dominant polyglutamine expansion in huntingtin determines the loss of neurons in

  11. Applications of a streak-camera-based imager with simultaneous high space and time resolution

    Science.gov (United States)

    Klick, David I.; Knight, Frederick K.

    1993-01-01

    A high-speed imaging device has been built that is capable of recording several hundred images over a time span of 25 to 400 ns. The imager is based on a streak camera, which provides both spatial and temporal resolution. The system's current angular resolution is 16 X 16 pixels, with a time resolution of 250 ps. It was initially employed to provide 3-D images of objects, in conjunction with a short-pulse (approximately 100 ps) laser. For the 3-D (angle-angle-range) laser radar, the 250 ps time resolution corresponds to a range resolution of 4 cm. In the 3-D system, light from a short-pulse laser (a frequency-doubled, Q-switched, mode-locked Nd:YAG laser operating at a wavelength of 532 nm) flood-illuminates a target of linear dimension approximately 1 m. The returning light from the target is imaged, and the image is dissected by a 16 X 16 array of optical fibers. At the other end of the fiber optic image converter, the 256 fibers form a vertical line array, which is input to the slit of a streak camera. The streak camera sweeps the input line across the output phosphor screen so that horizontal position is directly proportional to time. The resulting 2-D image (fiber location vs. time) at the phosphor is read by an intensified (SIT) vidicon TV tube, and the image is digitized and stored. A computer subsequently decodes the image, unscrambling the linear pixels into an angle-angle image at each time or range bin. We are left with a series of snapshots, each one depicting the portion of target surface in a given range bin. The pictures can be combined to form a 3-D realization of the target. Continuous recording of many images over a short time span is of use in imaging other transient phenomena. These applications share a need for multiple images from a nonrepeatable transient event of time duration on the order of nanoseconds. Applications discussed for the imager include (1) pulsed laser beam diagnostics -- measuring laser beam spatial and temporal structure, (2

  12. β-Catenin Regulates Primitive Streak Induction through Collaborative Interactions with SMAD2/SMAD3 and OCT4

    DEFF Research Database (Denmark)

    Funa, Nina Sofi Ayumi; Schachter, Karen; Lerdrup, Mads

    2015-01-01

    Canonical Wnt and Nodal signaling are both required for induction of the primitive streak (PS), which guides organization of the early embryo. The Wnt effector b-catenin is thought to function in these early lineage specification decisions via transcriptional activation of Nodal signaling. Here, we...... specification. This study provides mechanistic insight into how Wnt signaling controls early cell lineage decisions....

  13. Evaluation of DipStreak containing CNA-MacConkey agar: a new bedside urine culture device.

    Science.gov (United States)

    Colodner, R; Keness, Y

    2000-07-01

    Many bedside urine culture devices have been developed with the aim of reliability, simplicity and use in both the physician's office and the clinical laboratory. To compare a novel bedside urine culture device (DipStreak, Novamed Ltd., Israel) comprising a combination of MacConkey and Columbia CNA blood agar with conventional seeding on the same culture media. A total of 1,000 urine specimens sent to our microbiology laboratory were simultaneously processed by both methods. Results were evaluated after 24 and 48 hours incubation at 37 degrees C. Altogether, 171 (17.1%) and 124 (12.4%) specimens were defined as positive by the conventional method using cutoff values of 10(4) colony-forming units/ml and 10(5) CFU/ml respectively; 178 specimens (17.8%) were defined as contaminated. The sensitivity, specificity, positive and negative predictive values of DipStreak for urinary tract infection were 98.8%, 98.6%, 96% and 99.6% respectively, using a cutoff value of 10(4) CFU/ml, and 99.3%, 99.2%, 96% and 99.8% respectively, using cutoff value of 10(5) CFU/ml. Full agreement between both techniques was 95%. The agreement rate between DipStreak and conventional seeding was remarkably high. These results suggest that DipStreak in the agar combination tested in this study is a useful and precise tool for diagnosing urinary tract infections.

  14. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance

    Science.gov (United States)

    Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a costeffective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chrom...

  15. Wheat streak mosaic virus coat protein is a determinant for vector transmission by the wheat curl mite

    Science.gov (United States)

    Wheat streak mosaic virus (WSMV; genus Tritimovirus; family Potyviridae), is transmitted by the wheat curl mite (Aceria tosichella Keifer). The requirement of coat protein (CP) for WSMV transmission by the wheat curl mite was examined using a series of viable deletion and point mutations. Mite trans...

  16. A quill vibrating mechanism for a sounding apparatus in the streaked tenrec (Hemicentetes semispinosus).

    Science.gov (United States)

    Endo, Hideki; Koyabu, Daisuke; Kimura, Junpei; Rakotondraparany, Felix; Matsui, Atsushi; Yonezawa, Takahiro; Shinohara, Akio; Hasegawa, Masami

    2010-05-01

    The streaked tenrec (Hemicentetes semispinosus) is equipped with a quill vibrating mechanism on the dorsal side of the caudal trunk that has evolved as an extraordinary sounding apparatus for communication. An arrangement of 15 or 16 light-brown quills was observed. Thickened cutaneous muscles were confirmed beneath quills. We named this structure the "quill vibrator disc" (QVD). The QVD was 16.8 mm long and 8.55 mm wide in a typical adult. Longitudinal musculature symmetrical about the sagittal plane was developed in the QVD. Myocytes were found immunohistochemically to contain mainly fast myosin but not slow myosin. These findings indicate that the QVD is a specialized apparatus in the cutaneous muscle that contributes to the vibration of quills and to the production of sound for communication.

  17. Picosecond streak camera diagnostics of CO2 laser-produced plasmas

    International Nuclear Information System (INIS)

    Jaanimagi, P.A.; Marjoribanks, R.S.; Sancton, R.W.; Enright, G.D.; Richardson, M.C.

    1979-01-01

    The interaction of intense laser radiation with solid targets is currently of considerable interest in laser fusion studies. Its understanding requires temporal knowledge of both laser and plasma parameters on a picosecond time scale. In this paper we describe the progress we have recently made in analysing, with picosecond time resolution, various features of intense nanosecond CO 2 laser pulse interaction experiments. An infrared upconversion scheme, having linear response and <20 ps temporal resolution, has been utilized to characterise the 10 μm laser pulse. Various features of the interaction have been studied with the aid of picosecond IR and x-ray streak cameras. These include the temporal and spatial characteristics of high harmonic emission from the plasma, and the temporal development of the x-ray continuum spectrum. (author)

  18. Time-resolved measurements with streaked diffraction patterns from electrons generated in laser plasma wakefield

    Science.gov (United States)

    He, Zhaohan; Nees, John; Hou, Bixue; Krushelnick, Karl; Thomas, Alec; Beaurepaire, Benoît; Malka, Victor; Faure, Jérôme

    2013-10-01

    Femtosecond bunches of electrons with relativistic to ultra-relativistic energies can be robustly produced in laser plasma wakefield accelerators (LWFA). Scaling the electron energy down to sub-relativistic and MeV level using a millijoule laser system will make such electron source a promising candidate for ultrafast electron diffraction (UED) applications due to the intrinsic short bunch duration and perfect synchronization with the optical pump. Recent results of electron diffraction from a single crystal gold foil, using LWFA electrons driven by 8-mJ, 35-fs laser pulses at 500 Hz, will be presented. The accelerated electrons were collimated with a solenoid magnetic lens. By applying a small-angle tilt to the magnetic lens, the diffraction pattern can be streaked such that the temporal evolution is separated spatially on the detector screen after propagation. The observable time window and achievable temporal resolution are studied in pump-probe measurements of photo-induced heating on the gold foil.

  19. Sequence diversity and virulence in Zea mays of Maize streak virus isolates.

    Science.gov (United States)

    Martin, D P; Willment, J A; Billharz, R; Velders, R; Odhiambo, B; Njuguna, J; James, D; Rybicki, E P

    2001-09-30

    Full genomic sequences were determined for 12 Maize streak virus (MSV) isolates obtained from Zea mays and wild grass species. These and 10 other publicly available full-length sequences were used to classify a total of 66 additional MSV isolates that had been characterized by PCR-restriction fragment length polymorphism and/or partial nucleotide sequence analysis. A description is given of the host and geographical distribution of the MSV strain and subtype groupings identified. The relationship between the genotypes of 21 fully sequenced virus isolates and their virulence in differentially MSV-resistant Z. mays genotypes was examined. Within the only MSV strain grouping that produced severe symptoms in maize, highly virulent and widely distributed genotypes were identified that are likely to pose the most serious threat to maize production in Africa. Evidence is presented that certain of the isolates investigated may be the products of either intra- or interspecific recombination. Copyright 2001 Academic Press.

  20. Lasers and laser applications. Imaging implosion dynamics: The x-ray pinhole/streak camera

    International Nuclear Information System (INIS)

    Attwood, D.T.

    1976-01-01

    A Livermore-developed x-ray-sensitive streak camera was combined with a unique x-ray pinhole camera to make dynamic photographs of laser-irradiated fusion target implosions. These photographs show x radiation emitted from the imploding shell during its 100-ps implosion; they are the first continuous observations of an imploding laser-driven fusion capsule. The diagnostic system has a time resolution of 15 ps and a spatial resolution of about 6 μm. Results agree very well with those predicted by our LASNEX calculations, confirming that the essential physics are correctly described in the code and providing further confidence in the soundness of this approach to inertial confinement fusion

  1. Streak artifacts in dynamic CT. A phantom study of the anterior upper abdomen

    Energy Technology Data Exchange (ETDEWEB)

    Partanen, K. (Kuopio Central Hospital (Finland)); Kormano, M. (Turku Univ. (Finland). Dept. of Radiology)

    1984-01-01

    Experiments with a body phantom during dynamic CT scanning with the Somatom 2 CT scanner indicate that the periodic streak artifacts seen on the anterior part of the liver in patients are caused by peristalsis of the stomach and resulting motion of the air fluid level. Therefore, the attenuation values of the anterior portion of the liver artifactually oscillate around the baseline value during the dynamic series of scans. This artifact is produced by a change in the position of the stomach air fluid level and is dependent on the direction of tube rotation. The mean of the artifactually oscillating attenuation readings is close to the mean density but usually useless in dynamic CT because the attenuation values change so rapidly in the dynamic phase that averaging measurements also will cause errors.

  2. Towards jitter free synchronization of synchroscan streak cameras by noisy periodic laser pulses

    International Nuclear Information System (INIS)

    Cunin, B.; Heisel, F.; Miehe, J.A.

    1991-01-01

    In connection with the parameters characterizing the phase noise in cw mode-locked lasers and under the employ of streak cameras operated by sinewave deflection, the timing capabilities of the measuring system for two commonly used synchronization techniques are discussed by stochastic description. Especially, the power spectrum of the sweep signal versus the laser phase noise is examined in detail. The theoretical results are used to interpret experimental observations recorded by means of actively and passively mode-locked lasers. One of the interesting applications of synchroscan operations to metrology is the determination of short-term instabilities of the oscillator on a time scale near to the period. (author) 12 refs.; 3 figs

  3. The role of Kenya in the trans-African spread of maize streak virus strain A.

    Science.gov (United States)

    Pande, Daniel; Madzokere, Eugene; Hartnady, Penelope; Kraberger, Simona; Hadfield, James; Rosario, Karyna; Jäschke, Anja; Monjane, Adérito L; Owor, Betty E; Dida, Mathews M; Shepherd, Dionne N; Martin, Darren P; Varsani, Arvind; Harkins, Gordon W

    2017-03-15

    Maize streak virus (MSV), the causal agent of maize streak disease (MSD), is the most important viral pathogen of Africa's staple food crop, maize. Previous phylogeographic analyses have revealed that the most widely-distributed and common MSV variant, MSV-A 1 , has been repeatedly traversing Africa over the past fifty years with long-range movements departing from either the Lake Victoria region of East Africa, or the region around the convergence of Zimbabwe, South Africa and Mozambique in southern Africa. Despite Kenya being the second most important maize producing country in East Africa, little is known about the Kenyan MSV population and its contribution to the ongoing diversification and trans-continental dissemination of MSV-A 1 . We therefore undertook a sampling survey in this country between 2008 and 2011, collecting MSD prevalence data in 119 farmers' fields, symptom severity data for 170 maize plants and complete MSV genome sequence data for 159 MSV isolates. We then used phylogenetic and phylogeographic analyses to show that whereas the Kenyan MSV population is likely primarily derived from the MSV population in neighbouring Uganda, it displays considerably more geographical structure than the Ugandan population. Further, this geographical structure likely confounds apparent associations between virus genotypes and both symptom severity and MSD prevalence in Kenya. Finally, we find that Kenya is probably a sink rather than a source of MSV diversification and movement, and therefore, unlike Uganda, Kenya probably does not play a major role in the trans-continental dissemination of MSV-A 1 . Copyright © 2017 Elsevier B.V. All rights reserved.

  4. STELLA-positive subregions of the primitive streak contribute to posterior tissues of the mouse gastrula.

    Science.gov (United States)

    Mikedis, Maria M; Downs, Karen M

    2012-03-01

    The developmental relationship between the posterior embryonic and extraembryonic regions of the mammalian gastrula is poorly understood. Although many different cell types are deployed within this region, only the primordial germ cells (PGCs) have been closely studied. Recent evidence has suggested that the allantois, within which the PGCs temporarily take up residence, contains a pool of cells, called the Allantoic Core Domain (ACD), critical for allantoic elongation to the chorion. Here, we have asked whether the STELLA-positive cells found within this region, thought to be specified PGCs, are actually part of the ACD and to what extent they, and other ACD cells, contribute to the allantois and fetal tissues. To address these hypotheses, STELLA was immunolocalized to the mouse gastrula between Early Streak (ES) and 12-somite pair (-s) stages (~6.75-9.0 days post coitum, dpc) in histological sections. STELLA was found in both the nucleus and cytoplasm in a variety of cell types, both within and outside of the putative PGC trajectory. Fate-mapping the headfold-stage (~7.75-8.0 dpc) posterior region, by which time PGCs are thought to be segregated into a distinct lineage, revealed that the STELLA-positive proximal ACD and intraembryonic posterior primitive streak (IPS) contributed to a wide range of somatic tissues that encompassed derivatives of the three primary germ layers. This contribution included STELLA-positive cells localizing to tissues both within and outside of the putative PGC trajectory. Thus, while STELLA may identify a subpopulation of cells destined for the PGC lineage, our findings reveal that it may be part of a broader niche that encompasses the ACD and through which the STELLA population may contribute cells to a wide variety of posterior tissues of the mouse gastrula. Copyright © 2011 Elsevier Inc. All rights reserved.

  5. Transitional features in human atherosclerosis. Intimal thickening, cholesterol clefts, and cell loss in human aortic fatty streaks.

    Science.gov (United States)

    Guyton, J. R.; Klemp, K. F.

    1993-01-01

    The possible transition from a subset of fatty streaks to fibrous plaques in human atherosclerosis has long been postulated, but transitional features in lesions have rarely been demonstrated. We examined human aortic fatty streaks to determine whether significant tendencies toward intimal thickening and toward deep extracellular lipid deposition might be found. To provide accurate ultrastructural assessment of lipid, tissues were processed by new electron microscopic cytochemical techniques. Unilateral fatty streaks exhibited a 60% increase in intimal thickness when compared to contralateral control tissue. Fat droplets in intimal cells accounted for approximately half of the increase; nonfat portions of cells and extracellular matrix accounted for the remainder. Six of 32 fatty streaks (19%) contained cholesterol clefts, which were found in the musculo-elastic (deep) layer of the intima or in the tunica media. Volume fractions occupied by cells in deep intima were reduced when cholesterol clefts were evident, suggesting loss of cells in early core regions. Light and electron microscopy showed structures consistent with lipid-rich core regions in lesions with cholesterol clefts and in a few lesions without cholesterol clefts. The findings of intimal thickening, core region formation, and disappearance of intimal cells constitute new evidence that some fatty streaks are progressive lesions and sites of eventual fibrous plaque development. The findings also suggest that the lipid-rich core region does not originate primarily from the debris of dead foam cells in the superficial intima, but instead arises from lipids accumulating gradually in the extracellular matrix of the deep intima. Images Figure 1 Figure 3 Figure 4 Figure 5 Figure 6 Figure 7 Figure 8 Figure 9 PMID:8238260

  6. Recombination hotspots and host susceptibility modulate the adaptive value of recombination during maize streak virus evolution

    Directory of Open Access Journals (Sweden)

    Monjane Adérito L

    2011-12-01

    Full Text Available Abstract Background Maize streak virus -strain A (MSV-A; Genus Mastrevirus, Family Geminiviridae, the maize-adapted strain of MSV that causes maize streak disease throughout sub-Saharan Africa, probably arose between 100 and 200 years ago via homologous recombination between two MSV strains adapted to wild grasses. MSV recombination experiments and analyses of natural MSV recombination patterns have revealed that this recombination event entailed the exchange of the movement protein - coat protein gene cassette, bounded by the two genomic regions most prone to recombination in mastrevirus genomes; the first surrounding the virion-strand origin of replication, and the second around the interface between the coat protein gene and the short intergenic region. Therefore, aside from the likely adaptive advantages presented by a modular exchange of this cassette, these specific breakpoints may have been largely predetermined by the underlying mechanisms of mastrevirus recombination. To investigate this hypothesis, we constructed artificial, low-fitness, reciprocal chimaeric MSV genomes using alternating genomic segments from two MSV strains; a grass-adapted MSV-B, and a maize-adapted MSV-A. Between them, each pair of reciprocal chimaeric genomes represented all of the genetic material required to reconstruct - via recombination - the highly maize-adapted MSV-A genotype, MSV-MatA. We then co-infected a selection of differentially MSV-resistant maize genotypes with pairs of reciprocal chimaeras to determine the efficiency with which recombination would give rise to high-fitness progeny genomes resembling MSV-MatA. Results Recombinants resembling MSV-MatA invariably arose in all of our experiments. However, the accuracy and efficiency with which the MSV-MatA genotype was recovered across all replicates of each experiment depended on the MSV susceptibility of the maize genotypes used and the precise positions - in relation to known recombination hotspots

  7. Recombination hotspots and host susceptibility modulate the adaptive value of recombination during maize streak virus evolution.

    Science.gov (United States)

    Monjane, Adérito L; van der Walt, Eric; Varsani, Arvind; Rybicki, Edward P; Martin, Darren P

    2011-12-02

    Maize streak virus -strain A (MSV-A; Genus Mastrevirus, Family Geminiviridae), the maize-adapted strain of MSV that causes maize streak disease throughout sub-Saharan Africa, probably arose between 100 and 200 years ago via homologous recombination between two MSV strains adapted to wild grasses. MSV recombination experiments and analyses of natural MSV recombination patterns have revealed that this recombination event entailed the exchange of the movement protein - coat protein gene cassette, bounded by the two genomic regions most prone to recombination in mastrevirus genomes; the first surrounding the virion-strand origin of replication, and the second around the interface between the coat protein gene and the short intergenic region. Therefore, aside from the likely adaptive advantages presented by a modular exchange of this cassette, these specific breakpoints may have been largely predetermined by the underlying mechanisms of mastrevirus recombination. To investigate this hypothesis, we constructed artificial, low-fitness, reciprocal chimaeric MSV genomes using alternating genomic segments from two MSV strains; a grass-adapted MSV-B, and a maize-adapted MSV-A. Between them, each pair of reciprocal chimaeric genomes represented all of the genetic material required to reconstruct - via recombination - the highly maize-adapted MSV-A genotype, MSV-MatA. We then co-infected a selection of differentially MSV-resistant maize genotypes with pairs of reciprocal chimaeras to determine the efficiency with which recombination would give rise to high-fitness progeny genomes resembling MSV-MatA. Recombinants resembling MSV-MatA invariably arose in all of our experiments. However, the accuracy and efficiency with which the MSV-MatA genotype was recovered across all replicates of each experiment depended on the MSV susceptibility of the maize genotypes used and the precise positions - in relation to known recombination hotspots - of the breakpoints required to re-create MSV

  8. Comparing the regional epidemiology of the cassava mosaic and cassava brown streak virus pandemics in Africa.

    Science.gov (United States)

    Legg, J P; Jeremiah, S C; Obiero, H M; Maruthi, M N; Ndyetabula, I; Okao-Okuja, G; Bouwmeester, H; Bigirimana, S; Tata-Hangy, W; Gashaka, G; Mkamilo, G; Alicai, T; Lava Kumar, P

    2011-08-01

    The rapid geographical expansion of the cassava mosaic disease (CMD) pandemic, caused by cassava mosaic geminiviruses, has devastated cassava crops in 12 countries of East and Central Africa since the late 1980s. Region-level surveys have revealed a continuing pattern of annual spread westward and southward along a contiguous 'front'. More recently, outbreaks of cassava brown streak disease (CBSD) were reported from Uganda and other parts of East Africa that had been hitherto unaffected by the disease. Recent survey data reveal several significant contrasts between the regional epidemiology of these two pandemics: (i) severe CMD radiates out from an initial centre of origin, whilst CBSD seems to be spreading from independent 'hot-spots'; (ii) the severe CMD pandemic has arisen from recombination and synergy between virus species, whilst the CBSD pandemic seems to be a 'new encounter' situation between host and pathogen; (iii) CMD pandemic spread has been tightly linked with the appearance of super-abundant Bemisia tabaci whitefly vector populations, in contrast to CBSD, where outbreaks have occurred 3-12 years after whitefly population increases; (iv) the CMGs causing CMD are transmitted in a persistent manner, whilst the two cassava brown streak viruses appear to be semi-persistently transmitted; and (v) different patterns of symptom expression mean that phytosanitary measures could be implemented easily for CMD but have limited effectiveness, whereas similar measures are difficult to apply for CBSD but are potentially very effective. An important similarity between the pandemics is that the viruses occurring in pandemic-affected areas are also found elsewhere, indicating that contrary to earlier published conclusions, the viruses per se are unlikely to be the key factors driving the two pandemics. A diagrammatic representation illustrates the temporal relationship between B. tabaci abundance and changing incidences of both CMD and CBSD in the Great Lakes region

  9. Overall comparison of subpicosecond electron beam diagnostics by the polychromator, the interferometer and the femtosecond streak camera

    CERN Document Server

    Watanabe, T; Yoshimatsu, T; Sasaki, S; Sugiyama, Y; Ishi, K; Shibata, Y; Kondo, Y; Yoshii, K; Ueda, T; Uesaka, M

    2002-01-01

    Measurements of longitudinal bunch length of subpicosecond and picosecond electron beams have been performed by three methods with three radiation sources at the 35 MeV S-band twin liner accelerators at Nuclear Engineering Research Laboratory, University of Tokyo. The methods we adopt are the femtosecond streak camera with a nondispersive reflective optics, the coherent transition radiation (CTR) Michelson interferometer and the 10 ch polychromator that detects the spectrum of CTR and coherent diffraction radiation (CDR). The measurements by the two CTR methods were independently done with the streak camera and their results were consistent with one another. As a result, the reliability of the polychromator for the diagnostics of less than picosecond electron bunch and the usefulness of the diagnostics for the single shot measurement were verified. Furthermore, perfect nondestructive diagnostics for subpicosecond bunches was performed utilizing CDR interferometry. Then the good agreement between CDR interfero...

  10. Molecular insights into Cassava brown streak virus susceptibility and resistance by profiling of the early host response

    OpenAIRE

    Anjanappa, Ravi B; Mehta, Devang; Okoniewski, Michal J; Szabelska-Berȩsewicz, Alicja; Gruissem, Wilhelm; Vanderschuren, Hervé

    2018-01-01

    Cassava brown streak viruses (CBSVs) are responsible for significant cassava yield losses in eastern sub-Saharan Africa. To study the possible mechanisms of plant resistance to CBSVs we inoculated CBSV-susceptible and -resistant cassava varieties with a mixed infection of CBSVs using top-cleft grafting. Transcriptome profiling of the two cassava varieties was performed at the earliest time-point of full infection (28 days after grafting) in the susceptible scions. The expression of genes enco...

  11. Distributed Blowing and Suction for the Purpose of Streak Control in a Boundary Layer Subjected to a Favorable Pressure Gradient

    Science.gov (United States)

    Forgoston, Eric; Tumin, Anatoli; Ashpis, David E.

    2005-01-01

    An analysis of the optimal control by blowing and suction in order to generate stream- wise velocity streaks is presented. The problem is examined using an iterative process that employs the Parabolized Stability Equations for an incompressible uid along with its adjoint equations. In particular, distributions of blowing and suction are computed for both the normal and tangential velocity perturbations for various choices of parameters.

  12. A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

    Energy Technology Data Exchange (ETDEWEB)

    Labaria, George R. [Univ. of California, Santa Cruz, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Warrick, Abbie L. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Celliers, Peter M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Kalantar, Daniel H. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-01-12

    The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

  13. Reduction of peristalsis-related gastrointestinal streak artifacts with dual-energy CT: a patient and phantom study.

    Science.gov (United States)

    Winklhofer, Sebastian; Lambert, Jack W; Wang, Zhen Jane; Sun, Yuxin; Gould, Robert G; Zagoria, Ronald J; Yeh, Benjamin M

    2016-08-01

    The purpose of the study was to assess the ability of rapid-kV switching (rs) dual-energy computed tomography (DECT) to reduce peristalsis-related streak artifact. rsDECT images of 100 consecutive patients (48 male, 52 female, mean age 57 years) were retrospectively evaluated in this institutional review board-approved study. Image reconstructions included virtual monochromatic 70 and 120 keV images, as well as iodine(-water) and water(-iodine) material decomposition images. We recorded the presence and severity of artifacts qualitatively (4-point scale) and quantitatively [iodine/water concentrations, Hounsfield units, gray scale values (GY)] and compared to corresponding unaffected reference tissue. Similar measures were obtained in DECT images of a peristalsis phantom. Wilcoxon signed-rank and paired t tests were used to compare results between different image reconstructions. Peristalsis-related streak artifacts were found in 49 (49%) of the DECT examinations. Artifacts were significantly more severe in 70, 120, and water(-iodine) images than in iodine(-water) images (qualitative readout P peristalsis DECT phantom study. Peristalsis-related streak artifacts seen in 70, 120 keV, and water(-iodine) images are substantially reduced in iodine(-water) images at rsDECT.

  14. An optical fiber coupled streak camera system for multichannel recording of simultaneous emission from a single plasma producing event

    International Nuclear Information System (INIS)

    Tan, T.H.; Williams, A.H.

    1983-01-01

    A streak camera system capable of multichannel sub-nanosecond recording of simultaneous emissions (photons and particles) from a single plasma interaction event (laser or particle beam) has been developed. In this system ultra-fast quenched (benzophenone) plastic scintillator detectors are coupled via optical fibers to a visible streak camera. The use of optical fibers presents two tractive features: miniaturization of detectors permits improved flexibility in placing detectors at the most desirable location and in greater number than can normally be accommodated; and the detectors are insensitive to electromagnetic noise generated both from the interacting plasmas and from the high voltage components associated with the laser or particle beam system. The fibers can be directly routed through vacuum tight couplers at the target chamber wall and brought into direct contact with the photocathode of the camera in most applications. In fusion experiments, however, the fiber florescence and Cerenkov radiation due to the copious emissions of energetic electrons and x-rays can present serious problems in the use of long fibers. Here, short fibers can be used and the visible streak camera is then focused through a glass port of the target chamber onto the open ends of these optical fibers

  15. Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus

    Directory of Open Access Journals (Sweden)

    Fangquan Wang

    2016-05-01

    Full Text Available Rice black-streaked dwarf virus (RBSDV belongs to the genus Fijivirus in the family of Reoviridae and causes severe yield loss in rice-producing areas in Asia. RNA silencing, as a natural defence mechanism against plant viruses, has been successfully exploited for engineering virus resistance in plants, including rice. In this study, we generated transgenic rice lines harbouring a hairpin RNA (hpRNA construct targeting four RBSDV genes, S1, S2, S6 and S10, encoding the RNA-dependent RNA polymerase, the putative core protein, the RNA silencing suppressor and the outer capsid protein, respectively. Both field nursery and artificial inoculation assays of three generations of the transgenic lines showed that they had strong resistance to RBSDV infection. The RBSDV resistance in the segregating transgenic populations correlated perfectly with the presence of the hpRNA transgene. Furthermore, the hpRNA transgene was expressed in the highly resistant transgenic lines, giving rise to abundant levels of 21–24 nt small interfering RNA (siRNA. By small RNA deep sequencing, the RBSDV-resistant transgenic lines detected siRNAs from all four viral gene sequences in the hpRNA transgene, indicating that the whole chimeric fusion sequence can be efficiently processed by Dicer into siRNAs. Taken together, our results suggest that long hpRNA targeting multiple viral genes can be used to generate stable and durable virus resistance in rice, as well as other plant species.

  16. [Evaluation of an automated streaking system of urine samples for urine cultures].

    Science.gov (United States)

    Bustamante, Verónica; Meza, Paulina; Román, Juan C; García, Patricia

    2014-12-01

    Automated systems have simplified laboratory workflow, improved standardization, traceability and diminished human errors and workload. Although microbiology laboratories have little automation, in recent years new tools for automating pre analytical steps have appeared. To assess the performance of an automated streaking machine for urine cultures and its agreement with the conventional manual plating method for semi quantitative colony counts. 495 urine samples for urinary culture were inoculated in CPS® agar using our standard protocol and the PREVI™ Isola. Rates of positivity, negativity, polymicrobial growth, bacterial species, colony counts and re-isolation requirements were compared. Agreement was achieved in 98.97% of the positive/negative results, in 99.39% of the polymicrobial growth, 99.76% of bacterial species isolated and in 98.56 % of colony counts. The need for re-isolation of colonies decreased from 12.1% to 1.1% using the automated system. PREVI™ Isola's performance was as expected, time saving and improving bacterial isolation. It represents a helpful tool for laboratory automation.

  17. Streaks of Life: The Introduction and Translation of a Passage from the Autobiography of Ethel Smyth

    Directory of Open Access Journals (Sweden)

    Nina Dragičević

    2015-09-01

    Full Text Available In the translated passage, taken from the autobiography of Ethel Smyth, Streaks of Life, the author writes about the position of women in music, her own position—that of a female composer in the early 20th century England. The author speaks of terror and the patronizing diction of patriarchal society. She continues with a critique of media representations, but mostly focuses on difficulties in the attempts to place one’s (woman’s artwork in public space. Despite the fact that she was romantically involved with women throughout her life and wrote about them in her other autobiographical texts, she refuses to connect lesbian identity with her work—perhaps the reason lies in the ‘safety’ of being in a closet, or because of her perceived irrelevance of lesbian identities towards artist’s output. What she emphasizes more is a woman’s perspective—reasonably so, since she was deeply involved with the suffrage movement. In her descriptions, she considers economic and political contexts of the First World War era, which gave the opportunity of holding a (temporary job for women—both in factories and in orchestras. At the end, she returns to specifics of women’s position in society, and calls for a rebellion against the tyranny of the patriarchy.

  18. Streak-camera measurements of the PEP-II high-energy ring

    International Nuclear Information System (INIS)

    Fisher, A. S.; Assmann, R. W.; Lumpkin, A. H.; Zotter, B.; Byrd, J.; Hinkson, J.

    1998-01-01

    The third commissioning run of the PEP-II High-Energy Ring (HER, the 9 GeV electron ring), in January 1998, included extensive measurements of single-bunch and multibunch fills using LBNL's dual-axis streak camera combined with Argonne's 119.0 MHz synchroscan plug-in. For single bunches, the dependence of bunch length on charge and rf voltage was studied from 0.5 to 2.5 mA and from 9.5 to 15 MV; the measured values ranged from 38 to 49 ps rms. The multibunch work focused on longitudinal instabilities as the current in the ring was raised to 500 mA, and the length of the bunch train was varied from 100 bunches (with 4.2 ns spacing) to a full ring. Large oscillations of up to 180 ps peak to peak were observed for bunches half a ring turn away from the start of the train, especially at higher currents and for trains filling roughly half the ring. These observations led to a new fill pattern with more gaps that allowed us to raise the current to 750 mA by the end of the run

  19. Streak-camera measurements of the PEP-II high-energy ring

    International Nuclear Information System (INIS)

    Fisher, A.S.; Assmann, R.W.; Lumpkin, A.H.; Zotter, B.; Byrd, J.; Hinkson, J.

    1998-01-01

    The third commissioning run of the PEP-II High-Energy Ring (HER, the 9 GeV electron ring), in January 1998, included extensive measurements of single-bunch and multibunch fills using LBNL close-quote s dual-axis streak camera combined with Argonne close-quote s 119.0 MHz synchroscan plug-in. For single bunches, the dependence of bunch length on charge and rf voltage was studied from 0.5 to 2.5 mA and from 9.5 to 15 MV; the measured values ranged from 38 to 49 ps rms. The multibunch work focused on longitudinal instabilities as the current in the ring was raised to 500 mA, and the length of the bunch train was varied from 100 bunches (with 4.2 ns spacing) to a full ring. Large oscillations of up to 180 ps peak to peak were observed for bunches half a ring turn away from the start of the train, especially at higher currents and for trains filling roughly half the ring. These observations led to a new fill pattern with more gaps that allowed us to raise the current to 750 mA by the end of the run. copyright 1998 American Institute of Physics

  20. Improving the diffraction of full-length human selenomethionyl metavinculin crystals by streak-seeding

    Energy Technology Data Exchange (ETDEWEB)

    Rangarajan, Erumbi S.; Izard, Tina (Scripps)

    2012-06-28

    Metavinculin is an alternatively spliced isoform of vinculin that has a 68-residue insert in its tail domain (1134 total residues) and is exclusively expressed in cardiac and smooth muscle tissue, where it plays important roles in myocyte adhesion complexes. Mutations in the metavinculin-specific insert are associated with dilated cardiomyopathy (DCM) in man. Crystals of a DCM-associated mutant of full-length selenomethionine-labeled metavinculin grown by hanging-drop vapor diffusion diffracted poorly and were highly sensitive to radiation, preventing the collection of a complete X-ray diffraction data set at the highest possible resolution. Streak-seeding markedly improved the stability, crystal-growth rate and diffraction quality of DCM-associated mutant metavinculin crystals, allowing complete data collection to 3.9 {angstrom} resolution. These crystals belonged to space group P4{sub 3}2{sub 1}2, with two molecules in the asymmetric unit and unit-cell parameters a = b = 170, c = 211 {angstrom}, {alpha} = {beta} = {gamma} = 90{sup o}.

  1. Lucerne transient streak virus; a Recently Detected Virus Infecting Alfafa (Medicago sativa in Central Saudi Arabia

    Directory of Open Access Journals (Sweden)

    Ahmed Raza

    2017-02-01

    Full Text Available A survey was conducted to determine the status of Lucerne transient streak virus (LTSV in three high-yielding alfalfa regions in central Saudi Arabia (Riyadh, Qassim, and Hail during 2014. Three hundred and eight symptomatic alfalfa, and seven Sonchus oleraceus samples were collected. DAS-ELISA indicated that 59 of these samples were positive to LTSV. Two isolates of LTSV from each region were selected for molecular studies. RT-PCR confirmed the presence of LTSV in the selected samples using a specific primer pair. Percentage identity and homology tree comparisons revealed that all Saudi isolates were more closely related to each other but also closely related to the Canadian isolate-JQ782213 (97.1–97.6% and the New Zealand isolate-U31286 (95.8–97.1%. Comparing Saudi isolates of LTSV with ten other sobemoviruses based on the coat protein gene sequences confirmed the distant relationship between them. Eleven out of fourteen plant species used in host range study were positive to LTSV. This is the first time to document that Trifolium alexandrinum, Nicotiana occidentalis, Chenopodium glaucum, and Lathyrus sativus are new host plant species for LTSV and that N. occidentalis being a good propagative host for it.

  2. Effect of rosella extract on development of fatty streaks lesions in female rats

    Directory of Open Access Journals (Sweden)

    E. R. Al-Kennany

    2010-01-01

    Full Text Available This research was conducted to explore the effect of rosella (Hibiscus sabdariffa on female rats on oxidative stress which induced by 0.5% H2O2. Oxidative stress has been investigated via tissue (aorta and heart malonadyaldehyde (MDA as indirect lipid peroxidation index. For atherosclerotic lesions follow up light microscopical technique has been applied. The result elucidate significant reduction in lipid profit parameters namely: low density lipoprotein (LDL-c, triglycerides, very low density lipoprotein (vLDL-c, atherogenic index and significant elevation in high density lipoprotein (HDL-c in few animals treated with H2O2 and rosella extract, parallely, this research illustrate reduction in aorta and heart MDA concentration, concomitant with significant rising in glutathione (GSH level. Histopathologically, this study revealed fatty streaks associated with infiltration of mononuclear inflammatory cells have been detected after 60 days, in animal treated with rosella revealed reduction in lipid vacuoles and proliferation in vascular smooth muscle cells (VSMcs in media toward intimal layers after 40 days from treatment.

  3. Automatic detection of Martian dark slope streaks by machine learning using HiRISE images

    Science.gov (United States)

    Wang, Yexin; Di, Kaichang; Xin, Xin; Wan, Wenhui

    2017-07-01

    Dark slope streaks (DSSs) on the Martian surface are one of the active geologic features that can be observed on Mars nowadays. The detection of DSS is a prerequisite for studying its appearance, morphology, and distribution to reveal its underlying geological mechanisms. In addition, increasingly massive amounts of Mars high resolution data are now available. Hence, an automatic detection method for locating DSSs is highly desirable. In this research, we present an automatic DSS detection method by combining interest region extraction and machine learning techniques. The interest region extraction combines gradient and regional grayscale information. Moreover, a novel recognition strategy is proposed that takes the normalized minimum bounding rectangles (MBRs) of the extracted regions to calculate the Local Binary Pattern (LBP) feature and train a DSS classifier using the Adaboost machine learning algorithm. Comparative experiments using five different feature descriptors and three different machine learning algorithms show the superiority of the proposed method. Experimental results utilizing 888 extracted region samples from 28 HiRISE images show that the overall detection accuracy of our proposed method is 92.4%, with a true positive rate of 79.1% and false positive rate of 3.7%, which in particular indicates great performance of the method at eliminating non-DSS regions.

  4. Research on the underwater target imaging based on the streak tube laser lidar

    Science.gov (United States)

    Cui, Zihao; Tian, Zhaoshuo; Zhang, Yanchao; Bi, Zongjie; Yang, Gang; Gu, Erdan

    2018-03-01

    A high frame rate streak tube imaging lidar (STIL) for real-time 3D imaging of underwater targets is presented in this paper. The system uses 532nm pulse laser as the light source, the maximum repetition rate is 120Hz, and the pulse width is 8ns. LabVIEW platform is used in the system, the system control, synchronous image acquisition, 3D data processing and display are realized through PC. 3D imaging experiment of underwater target is carried out in a flume with attenuation coefficient of 0.2, and the images of different depth and different material targets are obtained, the imaging frame rate is 100Hz, and the maximum detection depth is 31m. For an underwater target with a distance of 22m, the high resolution 3D image real-time acquisition is realized with range resolution of 1cm and space resolution of 0.3cm, the spatial relationship of the targets can be clearly identified by the image. The experimental results show that STIL has a good application prospect in underwater terrain detection, underwater search and rescue, and other fields.

  5. Cassava brown streak disease and the sustainability of a clean seed system.

    Science.gov (United States)

    McQuaid, C F; Sseruwagi, P; Pariyo, A; van den Bosch, F

    2016-02-01

    One method of reducing disease in crops is the dissemination of disease-free planting material from a multiplication site to growers. This study assesses the validity and sustainability of this method for cassava brown streak disease, a threat to cassava crops across East Africa. Using mathematical modelling, the effects of different environmental and control conditions on pathogen spread were determined in a single-field multiplication site. High disease pressure, through large vector populations and disease in the surrounding area, combined with poor roguing practice, resulted in unsuccessful disease suppression. However, fields may produce sufficiently clean material for replanting if these factors can be overcome. Assessing the sustainability of a low-pressure system over multiple harvests, well-managed fields were found to maintain low disease levels, although producing sufficient cuttings may prove challenging. Replanting fields from the previous harvest does not lead to degeneration of planting material, only cutting numbers, and the importation of new clean material is not necessarily required. It is recommended that multiplication sites are only established in areas of low disease pressure and vector population density, and the importance of training in field management is emphasized. Cultivars displaying strong foliar symptoms are to be encouraged, as these allow for effective roguing, resulting in negative selection against the disease and reducing its spread. Finally, efforts to increase plant multiplication rates, the number of cuttings that can be obtained from each plant, have a significant impact on the sustainability of sites, as this represents the primary limiting factor to success.

  6. Clearing the Skies: A deep network architecture for single-image rain streaks removal.

    Science.gov (United States)

    Fu, Xueyang; Huang, Jiabin; Ding, Xinghao; Liao, Yinghao; Paisley, John

    2017-04-06

    We introduce a deep network architecture called DerainNet for removing rain streaks from an image. Based on the deep convolutional neural network (CNN), we directly learn the mapping relationship between rainy and clean image detail layers from data. Because we do not possess the ground truth corresponding to real-world rainy images, we synthesize images with rain for training. In contrast to other common strategies that increase depth or breadth of the network, we use image processing domain knowledge to modify the objective function and improve deraining with a modestly-sized CNN. Specifically, we train our DerainNet on the detail (high-pass) layer rather than in the image domain. Though DerainNet is trained on synthetic data, we find that the learned network translates very effectively to real-world images for testing. Moreover, we augment the CNN framework with image enhancement to improve the visual results. Compared with state-of-the-art single image deraining methods, our method has improved rain removal and much faster computation time after network training.

  7. Streaked optical pyrometer for measuring surface temperature of ion heated plasma

    Science.gov (United States)

    Roycroft, R.; Dyer, G. M.; Wagner, C.; Bernstein, A.; Ditmire, T.; Hegelich, B. M.; Albright, B. J.; Fernandez, J. C.; Bang, W.; Bradley, P. A.; Gautier, D. C.; Hamilton, C. E.; Palaniyappan, S.; Santiago Cordoba, M. A.; Vold, E. L.; Yin, L.

    2015-11-01

    The evolution of the interface between a light and heavy material isochorically heated to warm dense matter conditions is important to the understanding of electrostatic effects on the usual hydrodynamic understanding of fluid mixing. In recent experiments at the Trident laser facility in Los Alamos National Laboratory, the target, containing a high Z and a low Z material, is heated to several eV by laser accelerated aluminum ions. We fielded a streaked optical pyrometer to measure surface temperature. The pyrometer images the back surface of a heated target on a sub-nanosecond timescale with 400nm light from the plasma. This poster presents the details of the experimental setup and pyrometer design, as well as initial results of ion heating of aluminum targets. The interface between heated diamond and gold is also observed. Work supported by NNSA cooperative agreement DE-NA0002008 and the Los Alamos National Laboratory Directed Research and Development Program under the auspices of the U.S. DOE NNSAS, LLC, Los Alamos National Laboratory under Contract No. DE-AC52-06NA25396.

  8. Experimental observations of rapid Maize streak virus evolution reveal a strand-specific nucleotide substitution bias

    Directory of Open Access Journals (Sweden)

    Varsani Arvind

    2008-09-01

    Full Text Available Abstract Background Recent reports have indicated that single-stranded DNA (ssDNA viruses in the taxonomic families Geminiviridae, Parvoviridae and Anellovirus may be evolving at rates of ~10-4 substitutions per site per year (subs/site/year. These evolution rates are similar to those of RNA viruses and are surprisingly high given that ssDNA virus replication involves host DNA polymerases with fidelities approximately 10 000 times greater than those of error-prone viral RNA polymerases. Although high ssDNA virus evolution rates were first suggested in evolution experiments involving the geminivirus maize streak virus (MSV, the evolution rate of this virus has never been accurately measured. Also, questions regarding both the mechanistic basis and adaptive value of high geminivirus mutation rates remain unanswered. Results We determined the short-term evolution rate of MSV using full genome analysis of virus populations initiated from cloned genomes. Three wild type viruses and three defective artificial chimaeric viruses were maintained in planta for up to five years and displayed evolution rates of between 7.4 × 10-4 and 7.9 × 10-4 subs/site/year. Conclusion These MSV evolution rates are within the ranges observed for other ssDNA viruses and RNA viruses. Although no obvious evidence of positive selection was detected, the uneven distribution of mutations within the defective virus genomes suggests that some of the changes may have been adaptive. We also observed inter-strand nucleotide substitution imbalances that are consistent with a recent proposal that high mutation rates in geminiviruses (and possibly ssDNA viruses in general may be due to mutagenic processes acting specifically on ssDNA molecules.

  9. Genetic insights into Graminella nigrifrons Competence for maize fine streak virus infection and transmission.

    Directory of Open Access Journals (Sweden)

    Bryan J Cassone

    Full Text Available Most plant-infecting rhabdoviruses are transmitted by one or a few closely related insect species. Additionally, intraspecific differences in transmission efficacy often exist among races/biotypes within vector species and among strains within a virus species. The black-faced leafhopper, Graminella nigrifrons, is the only known vector of the persistent propagative rhabdovirus Maize fine streak virus (MFSV. Only a small percentage of leafhoppers are capable of transmitting the virus, although the mechanisms underlying vector competence are not well understood.RNA-Seq was carried out to explore transcript expression changes and sequence variation in G. nigrifrons and MFSV that may be associated with the ability of the vector to acquire and transmit the virus. RT-qPCR assays were used to validate differential transcript accumulation.Feeding on MFSV-infected maize elicited a considerable transcriptional response in G. nigrifrons, with increased expression of cytoskeleton organization and immunity transcripts in infected leafhoppers. Differences between leafhoppers capable of transmitting MFSV, relative to non-transmitting but infected leafhoppers were more limited, which may reflect difficulties discerning between the two groups and/or the likelihood that the transmitter phenotype results from one or a few genetic differences. The ability of infected leafhoppers to transmit MFSV did not appear associated with virus transcript accumulation in the infected leafhoppers or sequence polymorphisms in the viral genome. However, the non-structural MFSV 3 gene was expressed at unexpectedly high levels in infected leafhoppers, suggesting it plays an active role in the infection of the insect host. The results of this study begin to define the functional roles of specific G. nigrifrons and MFSV genes in the viral transmission process.

  10. Genetic insights into Graminella nigrifrons Competence for maize fine streak virus infection and transmission.

    Science.gov (United States)

    Cassone, Bryan J; Cisneros Carter, Fiorella M; Michel, Andrew P; Stewart, Lucy R; Redinbaugh, Margaret G

    2014-01-01

    Most plant-infecting rhabdoviruses are transmitted by one or a few closely related insect species. Additionally, intraspecific differences in transmission efficacy often exist among races/biotypes within vector species and among strains within a virus species. The black-faced leafhopper, Graminella nigrifrons, is the only known vector of the persistent propagative rhabdovirus Maize fine streak virus (MFSV). Only a small percentage of leafhoppers are capable of transmitting the virus, although the mechanisms underlying vector competence are not well understood. RNA-Seq was carried out to explore transcript expression changes and sequence variation in G. nigrifrons and MFSV that may be associated with the ability of the vector to acquire and transmit the virus. RT-qPCR assays were used to validate differential transcript accumulation. Feeding on MFSV-infected maize elicited a considerable transcriptional response in G. nigrifrons, with increased expression of cytoskeleton organization and immunity transcripts in infected leafhoppers. Differences between leafhoppers capable of transmitting MFSV, relative to non-transmitting but infected leafhoppers were more limited, which may reflect difficulties discerning between the two groups and/or the likelihood that the transmitter phenotype results from one or a few genetic differences. The ability of infected leafhoppers to transmit MFSV did not appear associated with virus transcript accumulation in the infected leafhoppers or sequence polymorphisms in the viral genome. However, the non-structural MFSV 3 gene was expressed at unexpectedly high levels in infected leafhoppers, suggesting it plays an active role in the infection of the insect host. The results of this study begin to define the functional roles of specific G. nigrifrons and MFSV genes in the viral transmission process.

  11. Method: a single nucleotide polymorphism genotyping method for Wheat streak mosaic virus

    Science.gov (United States)

    2012-01-01

    Background The September 11, 2001 attacks on the World Trade Center and the Pentagon increased the concern about the potential for terrorist attacks on many vulnerable sectors of the US, including agriculture. The concentrated nature of crops, easily obtainable biological agents, and highly detrimental impacts make agroterrorism a potential threat. Although procedures for an effective criminal investigation and attribution following such an attack are available, important enhancements are still needed, one of which is the capability for fine discrimination among pathogen strains. The purpose of this study was to develop a molecular typing assay for use in a forensic investigation, using Wheat streak mosaic virus (WSMV) as a model plant virus. Method This genotyping technique utilizes single base primer extension to generate a genetic fingerprint. Fifteen single nucleotide polymorphisms (SNPs) within the coat protein and helper component-protease genes were selected as the genetic markers for this assay. Assay optimization and sensitivity testing was conducted using synthetic targets. WSMV strains and field isolates were collected from regions around the world and used to evaluate the assay for discrimination. The assay specificity was tested against a panel of near-neighbors consisting of genetic and environmental near-neighbors. Result Each WSMV strain or field isolate tested produced a unique SNP fingerprint, with the exception of three isolates collected within the same geographic location that produced indistinguishable fingerprints. The results were consistent among replicates, demonstrating the reproducibility of the assay. No SNP fingerprints were generated from organisms included in the near-neighbor panel, suggesting the assay is specific for WSMV. Using synthetic targets, a complete profile could be generated from as low as 7.15 fmoles of cDNA. Conclusion The molecular typing method presented is one tool that could be incorporated into the forensic

  12. Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus.

    Science.gov (United States)

    Monjane, Adérito L; Pande, Daniel; Lakay, Francisco; Shepherd, Dionne N; van der Walt, Eric; Lefeuvre, Pierre; Lett, Jean-Michel; Varsani, Arvind; Rybicki, Edward P; Martin, Darren P

    2012-12-27

    Single-stranded (ss) DNA viruses in the family Geminiviridae are proving to be very useful in real-time evolution studies. The high mutation rate of geminiviruses and other ssDNA viruses is somewhat mysterious in that their DNA genomes are replicated in host nuclei by high fidelity host polymerases. Although strand specific mutation biases observed in virus species from the geminivirus genus Mastrevirus indicate that the high mutation rates in viruses in this genus may be due to mutational processes that operate specifically on ssDNA, it is currently unknown whether viruses from other genera display similar strand specific mutation biases. Also, geminivirus genomes frequently recombine with one another and an alternative cause of their high mutation rates could be that the recombination process is either directly mutagenic or produces a selective environment in which the survival of mutants is favoured. To investigate whether there is an association between recombination and increased basal mutation rates or increased degrees of selection favoring the survival of mutations, we compared the mutation dynamics of the MSV-MatA and MSV-VW field isolates of Maize streak virus (MSV; Mastrevirus), with both a laboratory constructed MSV recombinant, and MSV recombinants closely resembling MSV-MatA. To determine whether strand specific mutation biases are a general characteristic of geminivirus evolution we compared mutation spectra arising during these MSV experiments with those arising during similar experiments involving the geminivirus Tomato yellow leaf curl virus (Begomovirus genus). Although both the genomic distribution of mutations and the occurrence of various convergent mutations at specific genomic sites indicated that either mutation hotspots or selection for adaptive mutations might elevate observed mutation rates in MSV, we found no association between recombination and mutation rates. Importantly, when comparing the mutation spectra of MSV and TYLCV we

  13. Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus

    Directory of Open Access Journals (Sweden)

    Monjane Adérito L

    2012-12-01

    Full Text Available Abstract Background Single-stranded (ss DNA viruses in the family Geminiviridae are proving to be very useful in real-time evolution studies. The high mutation rate of geminiviruses and other ssDNA viruses is somewhat mysterious in that their DNA genomes are replicated in host nuclei by high fidelity host polymerases. Although strand specific mutation biases observed in virus species from the geminivirus genus Mastrevirus indicate that the high mutation rates in viruses in this genus may be due to mutational processes that operate specifically on ssDNA, it is currently unknown whether viruses from other genera display similar strand specific mutation biases. Also, geminivirus genomes frequently recombine with one another and an alternative cause of their high mutation rates could be that the recombination process is either directly mutagenic or produces a selective environment in which the survival of mutants is favoured. To investigate whether there is an association between recombination and increased basal mutation rates or increased degrees of selection favoring the survival of mutations, we compared the mutation dynamics of the MSV-MatA and MSV-VW field isolates of Maize streak virus (MSV; Mastrevirus, with both a laboratory constructed MSV recombinant, and MSV recombinants closely resembling MSV-MatA. To determine whether strand specific mutation biases are a general characteristic of geminivirus evolution we compared mutation spectra arising during these MSV experiments with those arising during similar experiments involving the geminivirus Tomato yellow leaf curl virus (Begomovirus genus. Results Although both the genomic distribution of mutations and the occurrence of various convergent mutations at specific genomic sites indicated that either mutation hotspots or selection for adaptive mutations might elevate observed mutation rates in MSV, we found no association between recombination and mutation rates. Importantly, when comparing

  14. Identification of functional sequences in the pregenomic RNA promoter of the Banana streak virus Cavendish strain (BSV-Cav).

    Science.gov (United States)

    Remans, Tony; Grof, Christopher P L; Ebert, Paul R; Schenk, Peer M

    2005-03-01

    The promoter regions of plant pararetroviruses direct transcription of the full-length viral genome into a pregenomic RNA that is an intermediate in the replication of the virus. It serves as template for reverse transcription and as polycistronic mRNA for translation to viral proteins. We have identified functional promoter elements in the intergenic region of the Cavendish isolate of Banana streak virus (BSV-Cav), a member of the genus Badnavirus. Potential binding sites for plant transcription factors were found both upstream and downstream of the transcription start site by homology search in the PLACE database of plant cis-acting elements. The functionality of these putative cis-acting elements was tested by constructing loss-of-function and "regain"-of-function mutant promoters whose activity was quantified in embryogenic sugarcane suspension cells. Four regions that are important for activity of the BSV-Cav promoter were identified: the region containing an as-1-like element, the region around -141 and down to -77, containing several putative transcription factor binding sites, the region including the CAAT-box, and the leader region. The results could help explain the high BSV-Cav promoter activity that was observed previously in transgenic sugarcane plants and give more insight into the plant cell-mediated replication of the viral genome in banana streak disease.

  15. Effectiveness of several dosage formula of oil and nano emulsion of citronella against vascular streak dieback (VSD) disease on cocoa

    Science.gov (United States)

    Noveriza, R.; Trisno, J.; Rahma, H.; Yuliani, S.; Reflin; Martinius

    2018-02-01

    The disease of Vascular streak dieback (VSD) is a deadly disease of cocoa plants, because it attacks the vascular tissue of cocoa at growing point of the plant. In West Sumatra the disease was first reported in 2015 with an incidence of disease range 58.82% - 100% and an intensity of disease range 24.29% - 44.7%. The purpose of this study was to examine the effectiveness of dosage application of oil formula and nano emulsion of citronella formula against Vascular streak dieback (VSD) disease on cocoa plants in West Sumatra (in Padang Pariaman District and Limapuluh Kota District). The results showed that the percentage of VSD disease attacks in both testing sites was 100%. The oil and nano emulsion of citronella formulas can reduce the intensity of VSD disease on cocoa plants in West Sumatra, particularly in Padang Pariaman District and Limapuluh Kota District. The reduction of VSD intensity in Padang Pariaman district ranged from 8.32 to 21.13%; while in Limapuluh Kota district ranged from 4.33 to 11.80%. The nano emulsion of citronella formulation is effective to suppress the intensity of VSD disease on cocoa plants at doses 0.1% (≥ 30% of effectiveness level).

  16. A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus.

    Science.gov (United States)

    Amuge, T; Berger, D K; Katari, M S; Myburg, A A; Goldman, S L; Ferguson, M E

    2017-08-29

    A time-course transcriptome analysis of two cassava varieties that are either resistant or susceptible to cassava brown streak disease (CBSD) was conducted using RNASeq, after graft inoculation with Ugandan cassava brown streak virus (UCBSV). From approximately 1.92 billion short reads, the largest number of differentially expressed genes (DEGs) was obtained in the resistant (Namikonga) variety at 2 days after grafting (dag) (3887 DEGs) and 5 dag (4911 DEGs). At the same time points, several defense response genes (encoding LRR-containing, NBARC-containing, pathogenesis-related, late embryogenesis abundant, selected transcription factors, chaperones, and heat shock proteins) were highly expressed in Namikonga. Also, defense-related GO terms of 'translational elongation', 'translation factor activity', 'ribosomal subunit' and 'phosphorelay signal transduction', were overrepresented in Namikonga at these time points. More reads corresponding to UCBSV sequences were recovered from the susceptible variety (Albert) (733 and 1660 read counts per million (cpm)) at 45 dag and 54 dag compared to Namikonga (10 and 117 cpm respectively). These findings suggest that Namikonga's resistance involves restriction of multiplication of UCBSV within the host. These findings can be used with other sources of evidence to identify candidate genes and biomarkers that would contribute substantially to knowledge-based resistance breeding.

  17. Design and first tests of miniature K010X soft x-ray streak and single-frame camera

    Science.gov (United States)

    Lebedev, V. B.; Feldman, G. G.; Myasnikov, A. F.; Chernyshev, N. V.; Shubski, I. I.; Liu, Jingru; Wang, Lijun; Zhang, Yongsheng; Zhao, Xueqin; Zheng, Guoxin; Xiao, Weiwei

    2007-01-01

    Description of a new K010X soft X-ray camera and the first results of it tests carried out in Russia and China are presented. In a streak mode the full sweep time for a 2 cm sweep route length on the image converter screen is from 2 ns up to 600 microseconds. In a single-frame mode the corresponding frame duration is from ~10 ns up to ~ 660 microseconds. Spatial resolution in a single frame mode was not less than 5 l.p./mm for soft X-ray radiation and not less 10 l.p./mm for UV radiation. Spatial resolution in a streak mode for soft X-ray radiation was from 5 up to 10 l.p./mm and for UV radiation on all the sweep ranges was not less than 10 l.p./mm, except for the range of 1 ns/cm where it was 5 l.p./mm. Limiting temporal resolution for UV radiation was near 10 ps and a dynamic range was 200 when full sweep time was 60 ns. The camera has small 430×115×200 mm dimensions, 5.0 kg weight and 10 VA power consumption.

  18. Avoiding acidic region streaking in two-dimensional gel electrophoresis: case study with two bacterial whole cell protein extracts.

    Science.gov (United States)

    Roy, Arnab; Varshney, Umesh; Pal, Debnath

    2014-09-01

    Acidic region streaking (ARS) is one of the lacunae in two-dimensional gel electrophoresis (2DE) of bacterial proteome. This streaking is primarily caused by nucleic acid (NuA) contamination and poses major problem in the downstream processes like image analysis and protein identification. Although cleanup and nuclease digestion are practiced as remedial options, these strategies may incur loss in protein recovery and perform incomplete removal of NuA. As a result, ARS has remained a common observation across publications, including the recent ones. In this work, we demonstrate how ultrasound wave can be used to shear NuA in plain ice-cooled water, facilitating the elimination of ARS in the 2DE gels without the need for any additional sample cleanup tasks. In combination with a suitable buffer recipe, IEF program and frequent paper-wick changing approach, we are able to reproducibly demonstrate the production of clean 2DE gels with improved protein recovery and negligible or no ARS. We illustrate our procedure using whole cell protein extracts from two diverse organisms, Escherichia coli and Mycobacterium smegmatis. Our designed protocols are straightforward and expected to provide good 2DE gels without ARS, with comparable times and significantly lower cost.

  19. Effects of Hot Streak and Phantom Cooling on Heat Transfer in a Cooled Turbine Stage Including Particulate Deposition

    Energy Technology Data Exchange (ETDEWEB)

    Bons, Jeffrey [The Ohio State Univ., Columbus, OH (United States); Ameri, Ali [The Ohio State Univ., Columbus, OH (United States)

    2016-01-08

    The objective of this research effort was to develop a validated computational modeling capability for the characterization of the effects of hot streaks and particulate deposition on the heat load of modern gas turbines. This was accomplished with a multi-faceted approach including analytical, experimental, and computational components. A 1-year no cost extension request was approved for this effort, so the total duration was 4 years. The research effort succeeded in its ultimate objective by leveraging extensive experimental deposition studies complemented by computational modeling. Experiments were conducted with hot streaks, vane cooling, and combinations of hot streaks with vane cooling. These studies contributed to a significant body of corporate knowledge of deposition, in combination with particle rebound and deposition studies funded by other agencies, to provide suitable conditions for the development of a new model. The model includes the following physical phenomena: elastic deformation, plastic deformation, adhesion, and shear removal. It also incorporates material property sensitivity to temperature and tangential-normal velocity rebound cross-dependencies observed in experiments. The model is well-suited for incorporation in CFD simulations of complex gas turbine flows due to its algebraic (explicit) formulation. This report contains model predictions compared to coefficient of restitution data available in the open literature as well as deposition results from two different high temperature turbine deposition facilities. While the model comparisons with experiments are in many cases promising, several key aspects of particle deposition remain elusive. The simple phenomenological nature of the model allows for parametric dependencies to be evaluated in a straightforward manner. This effort also included the first-ever full turbine stage deposition model published in the open literature. The simulations included hot streaks and simulated vane cooling

  20. Evaluation of the LLNL Spectrometer for Possible use with the NSTec Optical Streak Camera as a Light Gas Gun Diagnostic

    Energy Technology Data Exchange (ETDEWEB)

    O' Connor, J., Cradick, J.

    2012-09-27

    In fiscal year 2012, it was desired to combine a visible spectrometer with a streak camera to form a diagnostic system for recording time-resolved spectra generated in light gas gun experiments. Acquiring a new spectrometer was an option, but it was possible to borrow an existing unit for a period of months, which would be sufficient to evaluate both “off-line” and in-gas gun shots. If it proved adequate for this application, it could be duplicated (with possible modifications); if not, such testing would help determine needed specifications for another model. This report describes the evaluation of the spectrometer (separately and combined with the NSTec LO streak camera) for this purpose. Spectral and temporal resolutions were of primary interest. The first was measured with a monochromatic laser input. The second was ascertained by the combination of the spectrometer’s spatial resolution in the time-dispersive direction and the streak camera’s intrinsic temporal resolution. System responsivity was also important, and this was investigated by measuring the response of the spectrometer/camera system to black body input—the gas gun experiments are expected to be similar to a 3000K black body—as well as measuring the throughput of the spectrometer separately over a range of visible light provided by a monochromator. The flat field (in wavelength) was also measured and the final part of the evaluation was actual fielding on two gas gun shots. No firm specifications for spectral or temporal resolution were defined precisely, but these were desired to be in the 1–2 nm and 1–2 ns ranges, respectively, if possible. As seen below, these values were met or nearly met, depending on wavelength. Other performance parameters were also not given (threshold requirements) but the evaluations performed with laser, black body, and successful gas gun shots taken in aggregate indicate that the spectrometer is adequate for this purpose. Even still, some (relatively

  1. Comparative analysis of virus-derived small RNAs within cassava (Manihot esculenta Crantz) infected with cassava brown streak viruses.

    Science.gov (United States)

    Ogwok, Emmanuel; Ilyas, Muhammad; Alicai, Titus; Rey, Marie E C; Taylor, Nigel J

    2016-04-02

    Infection of plant cells by viral pathogens triggers RNA silencing, an innate antiviral defense mechanism. In response to infection, small RNAs (sRNAs) are produced that associate with Argonaute (AGO)-containing silencing complexes which act to inactivate viral genomes by posttranscriptional gene silencing (PTGS). Deep sequencing was used to compare virus-derived small RNAs (vsRNAs) in cassava genotypes NASE 3, TME 204 and 60444 infected with the positive sense single-stranded RNA (+ssRNA) viruses cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV), the causal agents of cassava brown streak disease (CBSD). An abundance of 21-24nt vsRNAs was detected and mapped, covering the entire CBSV and UCBSV genomes. The 21nt vsRNAs were most predominant, followed by the 22 nt class with a slight bias toward sense compared to antisense polarity, and a bias for adenine and uracil bases present at the 5'-terminus. Distribution and frequency of vsRNAs differed between cassava genotypes and viral genomes. In susceptible genotypes TME 204 and 60444, CBSV-derived sRNAs were seen in greater abundance than UCBSV-derived sRNAs. NASE 3, known to be resistant to UCBSV, accumulated negligible UCBSV-derived sRNAs but high populations of CBSV-derived sRNAs. Transcript levels of cassava homologues of AGO2, DCL2 and DCL4, which are central to the gene-silencing complex, were found to be differentially regulated in CBSV- and UCBSV-infected plants across genotypes, suggesting these proteins play a role in antiviral defense. Irrespective of genotype or viral pathogen, maximum populations of vsRNAs mapped to the cytoplasmic inclusion, P1 and P3 protein-encoding regions. Our results indicate disparity between CBSV and UCBSV host-virus interaction mechanisms, and provide insight into the role of virus-induced gene silencing as a mechanism of resistance to CBSD. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

  2. Realization of an optical multi and mono-channel analyzer, associated to a streak camera. Application to metrology of picosecond low intensity luminous pulses

    International Nuclear Information System (INIS)

    Roth, J.M.

    1985-02-01

    An electronic system including a low light level television tube (Nocticon) to digitize images from streak cameras is studied and realized. Performances (sensibility, signal-to-noise ratio) are studied and compared with a multi-channel analyzer using a linear network of photodiodes. It is applied to duration and amplitude measurement of short luminous pulses [fr

  3. Isotope ratios of (235)U/(238)U and (137)Cs/(235)U in black rain streaks on plaster wall caused by fallout of the Hiroshima atomic bomb.

    Science.gov (United States)

    Shizuma, Kiyoshi; Endo, Satoru; Fujikawa, Yoko

    2012-02-01

    Radiological investigations of fallout from the atomic bomb detonated over Hiroshima city on 6 August 1945 are important to estimate doses for inhabitants. The authors have analyzed the concentrations of (137)Cs, (235)U, and (238)U in streaks of black rain caused by the atomic bomb using gamma-ray spectroscopy and the ICP-QMS method. The black rain streaks were deposited on a plaster wall of a house located 3.7 km west of the hypocenter that has been kept in the same condition as after the rainfall. Cesium-137 ((137)Cs) was detected from black streak samples. Concentration of (137)Cs in the black rain streaks is twice as high as fallout deposition on the ground in this area. A (235)U/(238)U atom ratio of 0.00887 was found, which is higher than the natural ratio, reflecting the fact that the atomic bomb "Little Boy" used enriched uranium as fuel. The ratio (137)Cs/(235)U was determined to be 0.0091, which is about eight times higher than the estimated ratio of 0.00113 based on the fission yield.

  4. Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.)

    Science.gov (United States)

    Mycosphaerella fijiensis is the causal agent of black leaf streak (BLS) disease in bananas. This pathogen threatens global banana production as the main export cultivars are highly susceptible. As a consequence, commercial banana plantations must be protected chemically with fungicides; up to 40 app...

  5. Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.)

    Science.gov (United States)

    Mycosphaerella fijiensis, the causal agent of banana leaf streak disease (commonly known as black Sigatoka), is the most devastating pathogen attacking bananas (Musa spp). Recently the whole genome sequence of M. fijiensis became available. This sequence was screened for the presence of Variable Num...

  6. Isolation and characterization of the mating type locus of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana

    NARCIS (Netherlands)

    Conde, L.; Waalwijk, C.; Canto-Canché, B.B.; Kema, G.H.J.; Crous, P.W.; James, A.C.; Abeln, E.C.A.

    2007-01-01

    Idiomorphs mat1-1 and mat1-2 from Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana, were isolated. Degenerate oligos were used to amplify the HMG box of the mat1-2 idiomorph from M. fijiensis, showing homology with the HMG box of Mycosphaerella graminicola. Using a

  7. Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp)

    NARCIS (Netherlands)

    Garcia, S.A.L.; Lee, van der T.A.J.; Ferreira, C.F.; Lintel Hekkert, te B.; Zapater, M.F.; Goodwin, S.B.; Guzmán, M.; Kema, G.H.J.; Souza, M.T.

    2010-01-01

    ABSTRACT. We searched the genome of Mycosphaerella fijiensis for molecular markers that would allow population genetics analysis of this plant pathogen. M. fijiensis, the causal agent of banana leaf streak disease, also known as black Sigatoka, is the most devastating pathogen attacking bananas

  8. Strand-specific real-time RT-PCR quantitation of Maize fine streak virus genomic and positive-sense RNAs using high temperature reverse transcription

    Science.gov (United States)

    Efforts to analyze the replicative RNA produced by Maize fine streak virus (MVSF) within maize tissue was complicated by the lack of specificity during cDNA generation using standard reverse transcriptase protocols. Real-time qRT-PCR using cDNA generated by priming with random hexamers does not dist...

  9. Time and wavelength-resolved luminescence evaluation of several types of scintillators using streak camera system equipped with pulsed X-ray source

    Czech Academy of Sciences Publication Activity Database

    Furuya, Y.; Yanagida, T.; Fujimoto, Y.; Yokota, Y.; Kamada, K.; Kawaguchi, N.; Ishizu, S.; Uchiyama, K.; Mori, K.; Kitano, K.; Nikl, Martin; Yoshikawa, A.

    2011-01-01

    Roč. 634, č. 1 (2011), s. 59-63 ISSN 0168-9002 Institutional research plan: CEZ:AV0Z10100521 Keywords : streak camera system * scintillator * pulsed X-ray source Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 1.207, year: 2011

  10. Streaked spectrometry using multilayer x-ray-interference mirrors to investigate energy transport in laser-plasma applications

    International Nuclear Information System (INIS)

    Stradling, G.L.; Barbee, T.W. Jr.; Henke, B.L.; Campbell, E.M.; Mead, W.C.

    1981-08-01

    Transport of energy in laser-produced plasmas is scrutinized by devising spectrally and temporally identifiable characteristics in the x-ray emission history which identify the heat-front position at various times in the heating process. Measurements of the relative turn-on times of these characteristics show the rate of energy transport between various points. These measurements can in turn constrain models of energy transport phenomena. We are time-resolving spectrally distinguishable subkilovolt x-ray emissions from different layers of a disk target to examine the transport rate of energy into the target. A similar technique is used to measure the lateral expansion rate of the plasma spot. A soft x-ray streak camera with 15-psec temporal resolution is used to make the temporal measurements. Spectral discrimination of the incident signal is provided by multilayer x-ray interference mirrors

  11. Ecological Fitness of Non-vector Planthopper Sogatella furcifera on Rice Plants Infected with Rice Black Streaked Dwarf Virus

    Directory of Open Access Journals (Sweden)

    Xiao-chan HE

    2012-12-01

    Full Text Available We evaluated the effects of rice black streak dwarf virus (RBSDV-infested rice plants on the ecological parameters and its relevant defensive and detoxification enzymes of white-backed planthopper (WBPH in laboratory for exploring the relationship between RBSDV and the non-vector planthopper. The results showed that nymph survival rate, female adult weight and fecundity, and egg hatchability of WBPH fed on RBSDV-infested rice plants did not markedly differ from those on healthy plants, whereas the female adult longevity and egg duration significantly shortened on diseased plants. Furthermore, significantly higher activities of defensive enzymes (dismutase, catalase and peroxidase and detoxification enzymes (acetylcholinesterase, carboxylesterase and glutathione S-transferase were found in WBPH adults fed on infected plants. Results implied that infestation by RBSDV increased the ecological fitness of non-vector planthopper population.

  12. Isolation and characterization of subgenomic DNAs encapsidated in 'single' T = 1 isometric particles of Maize streak virus

    International Nuclear Information System (INIS)

    Casado, Carolina G.; Javier Ortiz, G.; Padron, Eric; Bean, Samantha J.; McKenna, Robert; Agbandje-McKenna, Mavis; Boulton, Margaret I.

    2004-01-01

    'Single' T = 1 isometric particles of Maize streak virus (MSV) have been isolated from infected maize leaves. Biochemical and genetic characterizations show that these particles contain subgenomic (sg) MSV DNA encapsidated by the MSV coat protein. The largest sg DNA is 1.56 kb, slightly larger than half genome size, although sg DNAs as small as 0.2 kb were also cloned. The sg DNAs are not infectious, and they do not appear to play a role in the pathogenicity of MSV. This is the first report of sg DNAs for MSV and, to our knowledge, the first time that encapsidated sg DNAs have been characterized at the sequence level for any geminivirus. These data will assist in our investigations into the role of genomic DNA in the formation of the unique geminate capsid architecture of the Geminiviridae

  13. Development and performance test of picosecond pulse x-ray excited streak camera system for scintillator characterization

    International Nuclear Information System (INIS)

    Yanagida, Takayuki; Fujimoto, Yutaka; Yoshikawa, Akira

    2010-01-01

    To observe time and wavelength-resolved scintillation events, picosecond pulse X-ray excited streak camera system is developed. The wavelength range spreads from vacuum ultraviolet (VUV) to near infrared region (110-900 nm) and the instrumental response function is around 80 ps. This work describes the principle of the newly developed instrument and the first performance test using BaF 2 single crystal scintillator. Core valence luminescence of BaF 2 peaking around 190 and 220 nm is clearly detected by our system, and the decay time turned out to be of 0.7 ns. These results are consistent with literature and confirm that our system properly works. (author)

  14. Southern rice black-streaked dwarf virus: a white-backed planthopper transmitted fijivirus threadening rice production in Asia

    Directory of Open Access Journals (Sweden)

    Guohui eZhou

    2013-09-01

    Full Text Available Southern rice black-streaked dwarf virus (SRBSDV, a nonenveloped icosahedral virus with a genome of 10 double-stranded RNA segments, is a novel species in the genus Fijivirus (family Reoviridae first recognized in 2008. Rice plants infected with this virus exhibit symptoms similar to those caused by Rice black-streaked dwarf virus. Since 2009, the virus has rapidly spread and caused serious rice losses in East and Southeast Asia. Significant progress has been made in recent years in understanding this disease, especially about the functions of the viral genes, rice–virus–insect interactions, and epidemiology and control measures. The virus can be efficiently transmitted by the white-backed planthopper (WBPH, Sogatella furcifera in a persistent circulative propagative manner but cannot be transmitted by the brown planthopper (Nilaparvata lugens and small brown planthopper (Laodelphax striatellus. Rice, maize, Chinese sorghum (Coix lacryma-jobi and other grass weeds can be infected via WBPH. However, only rice plays a major role in the virus infection cycle because of the vector's preference. In Southeast Asia, WBPH is a long-distance migratory rice pest. The disease cycle can be described as follows: SRBSDV and its WBPH vector overwinter in warm tropical or sub-tropical areas; viruliferous WBPH adults carry the virus from south to north via long-distance migration in early spring, transmit the virus to rice seedlings in the newly colonized areas, and lay eggs on the infected seedlings; the next generation of WBPHs propagate on infected seedlings, become viruliferous, disperse, and cause new disease outbreaks. Several molecular and serological methods have been developed to detect SRBSDV in plant tissues and individual insects. Control measures based on protection from WBPH, including seedbed coverage, chemical seed treatments, and chemical spraying of seedlings, have proven effective in China.

  15. Terpene Profile, Leaf Anatomy, and Enzyme Activity of Resistant and Susceptible Cocoa Clonesto Vascular Streak Dieback Disease

    Directory of Open Access Journals (Sweden)

    Adi Prawoto

    2014-10-01

    Full Text Available Vascular-streak dieback (VSD, Oncobasidium theobromae is the most prevalent disease of Theobroma cacao L. in Indonesia. This study aims to analyze resistance mechanism to VSD based on terpene profile, leaf anatomy, chitinase, and peroxidase study. Resistant clones of Sulawesi 1 and Sca 6 and susceptible clones of ICS 60 and TSH 858 were used for terpene profile, leaf anatomy analysis, chitinase, peroxides, polyphenol, lignin, and cellulose analysis. Those clones and KEE 2, KKM 22 and ICS 13 were used for peroxides analysis. For trichome study, the resistant clones of Sulawesi 1, Sca 6, KEE 2, and KKM 22, and susceptible clones of ICS 60 and TSH 858 were used. GCMS analysis showed that chromatogram pattern of resistant and susceptible groups were quite similar, but resistant clones contained 22% more components than the susceptible ones. Resistant clones contained groups of pinene, decane, myrcene, and octadecanoic acid, while those substances on usceptible clones were absent. Trichome was thicker on younger leaf, and its density on the basal was higher than that on the middle and tip leaf parts. Trichome density of resistant clone was not always thicker than that of susceptible ones. On resistant clones, stomatal density was lower and width of stomate pits was narrower, while thickness of epidermis layer and pallisade parenchym were higher. Polyphenol content of resistant clones were higher but lignin and cellulose of both groups were similar. Chitinase activity which has a role in hydrolysis of mycelia cell wall was higher on the resistant clones, but peroxides which has a role in polymeration of lignin biosynthesis was similar between both groups. It is concluded that groups of terpene pinene, decane, myrcene, and octadecanoic acid, thickness of leaf epidermis, density and width of stomata pit, and chitinase activity plays important role in cocoa resistance to VSD. Key words: Theobroma cacaoL., clone, vascular-streak dieback, resistance, leaf

  16. The effect of germinated fenugreek seeds and clofibrat on blood cholesterol level and aortic fatty streak in rabbit.

    Directory of Open Access Journals (Sweden)

    bahram delfan

    2010-03-01

    Full Text Available Atherosclerosis is the excess of fat and stiffness of arteries sidewalls in which specific areas of the circulatory system are involved, causing specific signs based on the involved area, the characteristics of the lesion, and the severity of involvement. The only factor necessary to cause atherosclerosis is the high level of LDL cholesterol. Today, drugs such as lovastatin, clofibrate, and Klystramyn are applied to reduce LDL and increase HDL levels. Material and methods: The effect of fenugreek seeds without any drugs or with clofibrat on blood lipids profile and fatty streak forming were evaluated in 25 male healthy rabbits. The rabbits were divided into 5 group of 5 and received the following diets and drugs for 45 days: Group Ι, normal diet without any drugs Group Π, high cholesterol diet without any drugs Group ΙΙΙ, high cholesterol diet in addition to germinated fenugreek seeds powder (600 mg bid Group ΙV, high cholesterol diet in addition to clofibrat (50 mg bid and GroupV, high cholesterol diet in addition to clofibrat (50 mg bid and germinated fenugreek seeds powder (600 mg bid. The blood samples were collected after overnight fasting at the beginning and at the end of the test period and were estimated for lipids profile. Also autopsy and aortic cross-sectional sampling was conducted for microscopic study after the experiment. Result: The serum total cholesterol, LDL, and triglyceride levels of groups ΙΙΙ, ΙV,V increased less than those in group Π but HDL levels in groups ΙΙΙ, ΙV and V increased more than that in group Π (P<0.001. Furthermore, the intensity of fatty streak was less in group V. Conclusion: This result indicates the usefulness of fenugreek seeds in the management of hyperlipidemia and atherosclerosis (P<0.05

  17. Identification and Removal of High Frequency Temporal Noise in a Nd:YAG Macro-Pulse Laser Assisted with a Diagnostic Streak Camera

    Energy Technology Data Exchange (ETDEWEB)

    Kent Marlett, Bechtel Nevada; Ke-Xun Sun Bechtel Nevada

    2004-09-23

    This paper discusses the use of a reference streak camera (SC) to diagnose laser performance and guide modifications to remove high frequency noise from Bechtel Nevada's long-pulse laser. The upgraded laser exhibits less than 0.1% high frequency noise in cumulative spectra, exceeding National Ignition Facility (NIF) calibration specifications. Inertial Confinement Fusion (ICF) experiments require full characterization of streak cameras over a wide range of sweep speeds (10 ns to 480 ns). This paradigm of metrology poses stringent spectral requirements on the laser source for streak camera calibration. Recently, Bechtel Nevada worked with a laser vendor to develop a high performance, multi-wavelength Nd:YAG laser to meet NIF calibration requirements. For a typical NIF streak camera with a 4096 x 4096 pixel CCD, the flat field calibration at 30 ns requires a smooth laser spectrum over 33 MHz to 68 GHz. Streak cameras are the appropriate instrumentation for measuring laser amplitude noise at these very high frequencies since the upper end spectral content is beyond the frequency response of typical optoelectronic detectors for a single shot pulse. The SC was used to measure a similar laser at its second harmonic wavelength (532 nm), to establish baseline spectra for testing signal analysis algorithms. The SC was then used to measure the new custom calibration laser. In both spatial-temporal measurements and cumulative spectra, 6-8 GHz oscillations were identified. The oscillations were found to be caused by inter-surface reflections between amplifiers. Additional variations in the SC spectral data were found to result from temperature instabilities in the seeding laser. Based on these findings, laser upgrades were made to remove the high frequency noise from the laser output.

  18. Identification and Removal of High Frequency Temporal Noise in a Nd:YAG Macro-Pulse Laser Assisted with a Diagnostic Streak Camera

    International Nuclear Information System (INIS)

    Kent Marlett; Ke-Xun Sun

    2004-01-01

    This paper discusses the use of a reference streak camera (SC) to diagnose laser performance and guide modifications to remove high frequency noise from Bechtel Nevada's long-pulse laser. The upgraded laser exhibits less than 0.1% high frequency noise in cumulative spectra, exceeding National Ignition Facility (NIF) calibration specifications. Inertial Confinement Fusion (ICF) experiments require full characterization of streak cameras over a wide range of sweep speeds (10 ns to 480 ns). This paradigm of metrology poses stringent spectral requirements on the laser source for streak camera calibration. Recently, Bechtel Nevada worked with a laser vendor to develop a high performance, multi-wavelength Nd:YAG laser to meet NIF calibration requirements. For a typical NIF streak camera with a 4096 x 4096 pixel CCD, the flat field calibration at 30 ns requires a smooth laser spectrum over 33 MHz to 68 GHz. Streak cameras are the appropriate instrumentation for measuring laser amplitude noise at these very high frequencies since the upper end spectral content is beyond the frequency response of typical optoelectronic detectors for a single shot pulse. The SC was used to measure a similar laser at its second harmonic wavelength (532 nm), to establish baseline spectra for testing signal analysis algorithms. The SC was then used to measure the new custom calibration laser. In both spatial-temporal measurements and cumulative spectra, 6-8 GHz oscillations were identified. The oscillations were found to be caused by inter-surface reflections between amplifiers. Additional variations in the SC spectral data were found to result from temperature instabilities in the seeding laser. Based on these findings, laser upgrades were made to remove the high frequency noise from the laser output

  19. Molecular Genetic Analysis and Evolution of Segment 7 in Rice Black-Streaked Dwarf Virus in China.

    Directory of Open Access Journals (Sweden)

    Yu Zhou

    Full Text Available Rice black-streaked dwarf virus (RBSDV causes maize rough dwarf disease or rice black-streaked dwarf disease and can lead to severe yield losses in maize and rice. To analyse RBSDV evolution, codon usage bias and genetic structure were investigated in 111 maize and rice RBSDV isolates from eight geographic locations in 2013 and 2014. The linear dsRNA S7 is A+U rich, with overall codon usage biased toward codons ending with A (A3s, S7-1: 32.64%, S7-2: 29.95% or U (U3s, S7-1: 44.18%, S7-2: 46.06%. Effective number of codons (Nc values of 45.63 in S7-1 (the first open reading frame of S7 and 39.96 in S7-2 (the second open reading frame of S7 indicate low degrees of RBSDV-S7 codon usage bias, likely driven by mutational bias regardless of year, host, or geographical origin. Twelve optimal codons were detected in S7. The nucleotide diversity (π of S7 sequences in 2013 isolates (0.0307 was significantly higher than in 2014 isolates (0.0244, P = 0.0226. The nucleotide diversity (π of S7 sequences in isolates from Jinan (0.0391 was higher than that from the other seven locations (P < 0.01. Only one S7 recombinant was detected in Baoding. RBSDV isolates could be phylogenetically classified into two groups according to S7 sequences, and further classified into two subgroups. S7-1 and S7-2 were under negative and purifying selection, with respective Ka/Ks ratios of 0.0179 and 0.0537. These RBSDV populations were expanding (P < 0.01 as indicated by negative values for Tajima's D, Fu and Li's D, and Fu and Li's F. Genetic differentiation was detected in six RBSDV subpopulations (P < 0.05. Absolute Fst (0.0790 and Nm (65.12 between 2013 and 2014, absolute Fst (0.1720 and Nm (38.49 between maize and rice, and absolute Fst values of 0.0085-0.3069 and Nm values of 0.56-29.61 among these eight geographic locations revealed frequent gene flow between subpopulations. Gene flow between 2013 and 2014 was the most frequent.

  20. The role of upper tropospheric jet streaks and lee-side cyclogenesis in the development of low level jets in the great plains

    Science.gov (United States)

    Uccellini, L. W.

    1980-01-01

    A review of 15 cases of low level jets (LLJ) which developed in the Great Plains is presented. For 12 out of the 15 cases, a systematic upper level flow pattern was isolated which includes the existence of a trough over the southwest United States and the propagation of upper level jet streaks from the Rocky Mountains toward the Great Plains. This flow pattern is responsible for lee side cyclogenesis or lee side troughing that produces the pressure gradients needed for the development of the LLJ. For the other three cases, a blocking ridge existed over the Great Plains and the upper level flow is relatively weak. It is during these situations that the classic, diurnal oscillating LLJ was observed. A more detailed review of four cases indicates that the subsynoptic scale adjustments associated with the upper level jet streak's forcing of lee side cyclogenesis could be an important factor in the development of LLJ's in the Great Plains.

  1. Construction of Double Right-Border Binary Vector Carrying Non-Host Gene Rxo1 Resistant to Bacterial Leaf Streak of Rice

    Directory of Open Access Journals (Sweden)

    Mei-rong XU

    2008-09-01

    Full Text Available Rxo1 cloned from maize is a non-host gene resistant to bacterial leaf streak of rice. pCAMBIA1305-1 with Rxo1 was digested with Sca I and NgoM IV and the double right-border binary vector pMNDRBBin6 was digested with Hpa I and Xma I. pMNDRBBin6 carrying the gene Rxo1 was acquired by ligation of blunt-end and cohesive end. The results of PCR, restriction enzyme analysis and sequencing indicated that the Rxo1 gene had been cloned into pMNDRBBin6. This double right-border binary vector, named as pMNDRBBin6-Rxo1, will play a role in breeding marker-free plants resistant to bacterial leaf streak of rice by genetic transformation.

  2. Streak-Camera Measurements with High Currents in PEP-II and Variable Optics in SPEAR3

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Weixeng; Fisher, Alan, a Corbett, Jeff; /SLAC

    2008-06-05

    A dual-axis, synchroscan streak camera was used to measure longitudinal bunch profiles in three storage rings at SLAC: the PEP-II low- and high-energy rings, and SPEAR3. At high currents, both PEP rings exhibit a transient synchronous-phase shift along the bunch train due to RF-cavity beam loading. Bunch length and profile asymmetry were measured along the train for a range of beam currents. To avoid the noise inherent in a dual-axis sweep, we accumulated single-axis synchroscan images while applying a 50-ns gate to the microchannel plate. To improve the extinction ratio, an upstream mirror pivoting at 1 kHz was synchronized with the 2kHz MCP gate to deflect light from other bunches off the photocathode. Bunch length was also measured on the HER as a function of beam energy. For SPEAR3 we measured bunch length as a function of single-bunch current for several lattices: achromatic, low-emittance and low momentum compaction. In the first two cases, resistive and reactive impedance components can be extracted from the longitudinal bunch profiles. In the low-alpha configurations, we observed natural bunch lengths approaching the camera resolution, requiring special care to remove instrumental effects, and saw evidence of periodic bursting.

  3. Transcriptome of the plant virus vector Graminella nigrifrons, and the molecular interactions of maize fine streak rhabdovirus transmission.

    Science.gov (United States)

    Chen, Yuting; Cassone, Bryan J; Bai, Xiaodong; Redinbaugh, Margaret G; Michel, Andrew P

    2012-01-01

    Leafhoppers (HEmiptera: Cicadellidae) are plant-phloem feeders that are known for their ability to vector plant pathogens. The black-faced leafhopper (Graminella nigrifrons) has been identified as the only known vector for the Maize fine streak virus (MFSV), an emerging plant pathogen in the Rhabdoviridae. Within G. nigrifrons populations, individuals can be experimentally separated into three classes based on their capacity for viral transmission: transmitters, acquirers and non-acquirers. Understanding the molecular interactions between vector and virus can reveal important insights in virus immune defense and vector transmission. RNA sequencing (RNA-Seq) was performed to characterize the transcriptome of G. nigrifrons. A total of 38,240 ESTs of a minimum 100 bp were generated from two separate cDNA libraries consisting of virus transmitters and acquirers. More than 60% of known D. melanogaster, A. gambiae, T. castaneum immune response genes mapped to our G. nigrifrons EST database. Real time quantitative PCR (RT-qPCR) showed significant down-regulation of three genes for peptidoglycan recognition proteins (PGRP - SB1, SD, and LC) in G. nigrifrons transmitters versus control leafhoppers. Our study is the first to characterize the transcriptome of a leafhopper vector species. Significant sequence similarity in immune defense genes existed between G. nigrifrons and other well characterized insects. The down-regulation of PGRPs in MFSV transmitters suggested a possible role in rhabdovirus transmission. The results provide a framework for future studies aimed at elucidating the molecular mechanisms of plant virus vector competence.

  4. Mapping quantitative trait loci conferring resistance to rice black-streaked virus in maize (Zea mays L.).

    Science.gov (United States)

    Luan, Junwen; Wang, Fei; Li, Yujie; Zhang, Bin; Zhang, Juren

    2012-08-01

    Maize rough dwarf disease (MRDD) is one of the most serious virus diseases of maize worldwide, and it causes great reduction of maize production. In China, the pathogen was shown to be rice black-streaked virus (RBSDV). Currently, MRDD has spread broadly and leads to significant loss in China. However, there has been little research devoted to this disease. Our aims were to identify the markers and loci underlying resistance to this virus disease. In this study, segregation populations were constructed from two maize elite lines '90110', which is highly resistant to MRDD and 'Ye478', which is highly susceptible to MRDD. The F(2) and BC(1) populations were used for bulk sergeant analysis (BSA) to identify resistance-related markers. One hundred and twenty F(7:9) RILs were used for quantitative trait loci (QTL) mapping through the experiment of multiple environments over 3 years. Natural occurrence and artificial inoculation were both used and combined to determine the phenotype of plants. Five QTL, qMRD2, qMRD6, qMRD7, qMRD8 and qMRD10 were measured in the experiments. The qMRD8 on chromosome 8 was proved to be one major QTL conferring resistance to RBSDV disease in almost all traits and environments, which explained 12.0-28.9 % of the phenotypic variance for disease severity in this present study.

  5. Replication modes of Maize streak virus mutants lacking RepA or the RepA-pRBR interaction motif.

    Science.gov (United States)

    Ruschhaupt, Moritz; Martin, Darren P; Lakay, Francisco; Bezuidenhout, Marion; Rybicki, Edward P; Jeske, Holger; Shepherd, Dionne N

    2013-08-01

    The plant-infecting mastreviruses (family Geminiviridae) express two distinct replication-initiator proteins, Rep and RepA. Although RepA is essential for systemic infectivity, little is known about its precise function. We therefore investigated its role in replication using 2D-gel electrophoresis to discriminate the replicative forms of Maize streak virus (MSV) mutants that either fail to express RepA (RepA(-)), or express RepA that is unable to bind the plant retinoblastoma related protein, pRBR. Whereas amounts of viral DNA were reduced in two pRBR-binding deficient RepA mutants, their repertoires of replicative forms changed only slightly. While a complete lack of RepA expression was also associated with reduced viral DNA titres, the only traces of replicative intermediates of RepA(-) viruses were those indicative of recombination-dependent replication. We conclude that in MSV, RepA, but not RepA-pRBR binding, is necessary for single-stranded DNA production and efficient rolling circle replication. Copyright © 2013 Elsevier Inc. All rights reserved.

  6. Phylogeny of Banana Streak Virus reveals recent and repetitive endogenization in the genome of its banana host (Musa sp.).

    Science.gov (United States)

    Gayral, Philippe; Iskra-Caruana, Marie-Line

    2009-07-01

    Banana streak virus (BSV) is a plant dsDNA pararetrovirus (family Caulimoviridae, genus badnavirus). Although integration is not an essential step in the BSV replication cycle, the nuclear genome of banana (Musa sp.) contains BSV endogenous pararetrovirus sequences (BSV EPRVs). Some BSV EPRVs are infectious by reconstituting a functional viral genome. Recent studies revealed a large molecular diversity of episomal BSV viruses (i.e., nonintegrated) while others focused on BSV EPRV sequences only. In this study, the evolutionary history of badnavirus integration in banana was inferred from phylogenetic relationships between BSV and BSV EPRVs. The relative evolution rates and selective pressures (d(N)/d(S) ratio) were also compared between endogenous and episomal viral sequences. At least 27 recent independent integration events occurred after the divergence of three banana species, indicating that viral integration is a recent and frequent phenomenon. Relaxation of selective pressure on badnaviral sequences that experienced neutral evolution after integration in the plant genome was recorded. Additionally, a significant decrease (35%) in the EPRV evolution rate was observed compared to BSV, reflecting the difference in the evolution rate between episomal dsDNA viruses and plant genome. The comparison of our results with the evolution rate of the Musa genome and other reverse-transcribing viruses suggests that EPRVs play an active role in episomal BSV diversity and evolution.

  7. Evolution of endogenous sequences of banana streak virus: what can we learn from banana (Musa sp.) evolution?

    Science.gov (United States)

    Gayral, Philippe; Blondin, Laurence; Guidolin, Olivier; Carreel, Françoise; Hippolyte, Isabelle; Perrier, Xavier; Iskra-Caruana, Marie-Line

    2010-07-01

    Endogenous plant pararetroviruses (EPRVs) are viral sequences of the family Caulimoviridae integrated into the nuclear genome of numerous plant species. The ability of some endogenous sequences of Banana streak viruses (eBSVs) in the genome of banana (Musa sp.) to induce infections just like the virus itself was recently demonstrated (P. Gayral et al., J. Virol. 83:6697-6710, 2008). Although eBSVs probably arose from accidental events, infectious eBSVs constitute an extreme case of parasitism, as well as a newly described strategy for vertical virus transmission in plants. We investigated the early evolutionary stages of infectious eBSV for two distinct BSV species-GF (BSGFV) and Imové (BSImV)-through the study of their distribution, insertion polymorphism, and structure evolution among selected banana genotypes representative of the diversity of 60 wild Musa species and genotypes. To do so, the historical frame of host evolution was analyzed by inferring banana phylogeny from two chloroplast regions-matK and trnL-trnF-as well as from the nuclear genome, using 19 microsatellite loci. We demonstrated that both BSV species integrated recently in banana evolution, circa 640,000 years ago. The two infectious eBSVs were subjected to different selective pressures and showed distinct levels of rearrangement within their final structure. In addition, the molecular phylogenies of integrated and nonintegrated BSVs enabled us to establish the phylogenetic origins of eBSGFV and eBSImV.

  8. Quantitative Analysis of Southern rice black-streaked dwarf virus in Sogatella furcifera and Virus Threshold for Transmission.

    Science.gov (United States)

    Matsukura, Keiichiro; Towata, Tomomi; Yoshida, Kazuhiro; Sakai, Junichi; Okuda, Mitsuru; Onuki, Masatoshi; Matsumura, Masaya

    2015-04-01

    We investigated Southern rice black-streaked dwarf virus (SRBSDV) accumulation in a vector insect, the whitebacked planthopper (Sogatella furcifera), to elucidate the association of virus accumulation in the vector with virus transmission efficiency. Real-time quantitative reverse transcription polymerase chain reaction analysis confirmed that this virus is transmitted in a persistent-propagative manner. SRBSDV was successfully transmitted by S. furcifera males in which RNA accumulation of the capsid protein gene of SRBSDV was >10(3) in the whole body of S. furcifera, indicating that the threshold accumulation of the virus RNA for virus transmission is 10(3) in an S. furcifera male. The SRBSDV detection rate in the immigrant population of S. furcifera was high in 2011 (39.5%); however, most of the insects contained fewer than 10(3) RNAs of the capsid protein gene. This result indicates that the risk of SRBSDV epidemics could be estimated from the proportion of virus-transmissible S. furcifera (i.e., S. furcifera that contained more than 10(3) RNAs of the virus capsid protein gene) rather than the SRBSDV detection rate in S. furcifera.

  9. Interaction research on an antiviral molecule that targets the coat protein of southern rice black-streaked dwarf virus.

    Science.gov (United States)

    Ran, Longlu; Ding, Yan; Luo, Liangzhi; Gan, Xiuhai; Li, Xiangyang; Chen, Yongzhong; Hu, Deyu; Song, Baoan

    2017-10-01

    Southern rice black-streaked dwarf virus (SRBSDV) coat protein (P10) is the key protein required for viral transmission and host plant infection and is thus a promising target for anti-SRBSDV agent screening. In this study, P10 was obtained from Escherichia coli through cloning, expression, and purification. The antiviral agent Ningnanmycin was selected as control, and a series of antiviral compounds based on the structural scaffold of ferulic acid were analyzed. Size-exclusion chromatography analysis results showed that compound F27 can alter the aggregation of P10 proteins. Furthermore, fluorescence titration and microscale thermophoresis assay results indicated that F27 binds to P10 with K A of 5.75×10 5 M -1 and K D of 7.81μM. The ligand- and receptor-based three-dimensional quantitative structure-activity analyses were performed to determine the requirements for the interaction between the carboxyl structures and P10s. On the basis of the obtained models and information, we provided insights regarding the design and optimization of novel molecules as anti-SRBSDV agents. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Light field driven streak-camera for single-shot measurements of the temporal profile of XUV-pulses from a free-electron laser; Lichtfeld getriebene Streak-Kamera zur Einzelschuss Zeitstrukturmessung der XUV-Pulse eines Freie-Elektronen Lasers

    Energy Technology Data Exchange (ETDEWEB)

    Fruehling, Ulrike

    2009-10-15

    The Free Electron Laser in Hamburg (FLASH) is a source for highly intense ultra short extreme ultraviolet (XUV) light pulses with pulse durations of a few femtoseconds. Due to the stochastic nature of the light generation scheme based on self amplified spontaneous emission (SASE), the duration and temporal profile of the XUV pulses fluctuate from shot to shot. In this thesis, a THz-field driven streak-camera capable of single pulse measurements of the XUV pulse-profile has been realized. In a first XUV-THz pump-probe experiment at FLASH, the XUV-pulses are overlapped in a gas target with synchronized THz-pulses generated by a new THz-undulator. The electromagnetic field of the THz light accelerates photoelectrons produced by the XUV-pulses with the resulting change of the photoelectron momenta depending on the phase of the THz field at the time of ionisation. This technique is intensively used in attosecond metrology where near infrared streaking fields are employed for the temporal characterisation of attosecond XUV-Pulses. Here, it is adapted for the analysis of pulse durations in the few femtosecond range by choosing a hundred times longer far infrared streaking wavelengths. Thus, the gap between conventional streak cameras with typical resolutions of hundreds of femtoseconds and techniques with attosecond resolution is filled. Using the THz-streak camera, the time dependent electric field of the THz-pulses was sampled in great detail while on the other hand the duration and even details of the time structure of the XUV-pulses were characterized. (orig.)

  11. Tomato yellow vein streak virus: relationship with Bemisia tabaci biotype B and host range Tomato yellow vein streak virus: interação com a Bemisia tabaci biótipo B e gama de hospedeiros

    Directory of Open Access Journals (Sweden)

    Ana Carolina Firmino

    2009-12-01

    Full Text Available The Tomato yellow vein streak virus (ToYVSV is a putative species of begomovirus, which was prevalent on tomato crops in São Paulo State, Brazil, until 2005. The objectives of this study were to evaluate the interaction between ToYVSV and its vector Bemisia tabaci biotype B and to identify alternative hosts for the virus. The minimum acquisition and inoculation access periods of ToYVSV by B. tabaci were 30 min and 10 min, respectively. Seventy five percent of tomato-test plants were infected when the acquisition and inoculation access periods were 24 h. The latent period of the virus in the insect was 16 h. The ToYVSV was retained by B. tabaci until 20 days after acquisition. First generation of adult whiteflies obtained from viruliferous females were virus free as shown by PCR analysis and did not transmit the virus to tomato plants. Out of 34 species of test-plants inoculated with ToYVSV only Capsicum annuum, Chenopodium amaranticolor, C. quinoa, Datura stramonium, Gomphrena globosa, Nicotiana clevelandii and N. tabacum cv. TNN were susceptible to infection. B. tabaci biotype B was able to acquire the virus from all these susceptible species, transmitting it to tomato plants.O Tomato yellow vein streak virus (ToYVSV é uma espécie putativa de begomovirus que infecta o tomateiro (Solanum lycopersicon em diversas regiões do Brasil onde se cultiva essa solanácea, sendo a espécie prevalente no estado de São Paulo até 2005. Estudou-se a interação do ToYVSV com a Bemisia tabaci biótipo B e identificaram-se hospedeiras alternativas deste vírus. Os períodos de acesso mínimo de aquisição (PAA e de inoculação (PAI foram de 30 min e 10 min, respectivamente. A porcentagem de plantas infectadas chegou até cerca de 75% após um PAA e PAI de 24 h. O período de latência do vírus no vetor foi de 16 horas. O ToYVSV foi retido pela B. tabaci até 20 dias após a aquisição do vírus. Não foi detectada transmissão do vírus para prog

  12. Retrieving fall streaks signatures in radar data to study microphysical changes of particle populations within a mixed phase clouds

    Science.gov (United States)

    Pfitzenmaier, Lukas; Dufournet, Yann; Unal, Christine; Russchenberg, Herman

    2016-04-01

    Within mixed-phase clouds the interaction of ice crystals with super-cooled liquid water leads to an enhanced growth of the ice particles. The growth of ice particles from mixed-phase interactions is an important process for precipitation formation in the mid-latitudes. However, such a process is still not clearly understood, nowerdays. To understand the ice particle growth within these clouds the microphysical changes of a single particle population falling through the cloud have to be analysed. Using the 3 beam configuration of the Transportable Atmospheric Radar (TARA) we retrieve the full 3-D Doppler velocity vector. This retrieved dynamical information is used to retrieve the path of a single particle population through the measured cloud system - the so called fall streak - so that microphysical changes along those path can be studied. A way to study changes in ice particle microphysics is to analyse radar Doppler spectra. Microphysical changes along the path of a population of ice particles through a mixed-phase cloud can be correlated to changes in the retrieved radar spectrograms. The instrumental synergy setup during the ACCEPT campaign (Analysis of the Composition of Clouds with Extended Polarization Techniques campaign), fall 2014, Cabauw the Netherlands, allows to detect liquid water layers within mixed-phase clouds. Therefore, identified changes within the retrieved spectrograms can be linked to the presence of super-cooled liquid layers. In this work we will explain the backtracking methodology and its use for the interpretation of velocity spectra. The application of this new methodology for ice particle growth process studies within mixed-phase clouds will be discussed.

  13. Dual transcriptome analysis reveals insights into the response to Rice black-streaked dwarf virus in maize.

    Science.gov (United States)

    Zhou, Yu; Xu, Zhennan; Duan, Canxing; Chen, Yanping; Meng, Qingchang; Wu, Jirong; Hao, Zhuanfang; Wang, Zhenhua; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Weng, Jianfeng; Li, Xinhai

    2016-08-01

    Maize rough dwarf disease (MRDD) is a viral infection that results in heavy yield losses in maize worldwide, particularly in the summer maize-growing regions of China. MRDD is caused by the Rice black-streaked dwarf virus (RBSDV). In the present study, analyses of microRNAs (miRNAs), the degradome, and transcriptome sequences were used to elucidate the RBSDV-responsive pathway(s) in maize. Genomic analysis indicated that the expression of three non-conserved and 28 conserved miRNAs, representing 17 known miRNA families and 14 novel miRNAs, were significantly altered in response to RBSDV when maize was inoculated at the V3 (third leaf) stage. A total of 99 target transcripts from 48 genes of 10 known miRNAs were found to be responsive to RBSDV infection. The annotations of these target genes include a SQUAMOSA promoter binding (SPB) protein, a P450 reductase, an oxidoreductase, and a ubiquitin-related gene, among others. Characterization of the entire transcriptome suggested that a total of 28 and 1085 differentially expressed genes (DEGs) were detected at 1.5 and 3.0 d, respectively, after artificial inoculation with RBSDV. The expression patterns of cell wall- and chloroplast-related genes, and disease resistance- and stress-related genes changed significantly in response to RBSDV infection. The negatively regulated genes GRMZM2G069316 and GRMZM2G031169, which are the target genes for miR169i-p5 and miR8155, were identified as a nucleolin and a NAD(P)-binding Rossmann-fold superfamily protein in maize, respectively. The gene ontology term GO:0003824, including GRMZM2G031169 and other 51 DEGs, was designated as responsive to RBSDV. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  14. Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions

    Directory of Open Access Journals (Sweden)

    Palmer Kenneth E

    2008-05-01

    Full Text Available Abstract Background A variety of interactions between up to three different movement proteins (MPs, the coat protein (CP and genomic DNA mediate the inter- and intra-cellular movement of geminiviruses in the genus Begomovirus. Although movement of viruses in the genus Mastrevirus is less well characterized, direct interactions between a single MP and the CP of these viruses is also clearly involved in both intra- and intercellular trafficking of virus genomic DNA. However, it is currently unknown how specific these MP-CP interactions are, nor how disruption of these interactions might impact on virus viability. Results Using chimaeric genomes of two strains of Maize streak virus (MSV we adopted a genetic approach to investigate the gross biological effects of interfering with interactions between virus MP and CP homologues derived from genetically distinct MSV isolates. MP and CP genes were reciprocally exchanged, individually and in pairs, between maize (MSV-Kom- and Setaria sp. (MSV-Set-adapted isolates sharing 78% genome-wide sequence identity. All chimaeras were infectious in Zea mays c.v. Jubilee and were characterized in terms of symptomatology and infection efficiency. Compared with their parental viruses, all the chimaeras were attenuated in symptom severity, infection efficiency, and the rate at which symptoms appeared. The exchange of individual MP and CP genes resulted in lower infection efficiency and reduced symptom severity in comparison with exchanges of matched MP-CP pairs. Conclusion Specific interactions between the mastrevirus MP and CP genes themselves and/or their expression products are important determinants of infection efficiency, rate of symptom development and symptom severity.

  15. Transcriptome of the plant virus vector Graminella nigrifrons, and the molecular interactions of maize fine streak rhabdovirus transmission.

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    Yuting Chen

    Full Text Available BACKGROUND: Leafhoppers (HEmiptera: Cicadellidae are plant-phloem feeders that are known for their ability to vector plant pathogens. The black-faced leafhopper (Graminella nigrifrons has been identified as the only known vector for the Maize fine streak virus (MFSV, an emerging plant pathogen in the Rhabdoviridae. Within G. nigrifrons populations, individuals can be experimentally separated into three classes based on their capacity for viral transmission: transmitters, acquirers and non-acquirers. Understanding the molecular interactions between vector and virus can reveal important insights in virus immune defense and vector transmission. RESULTS: RNA sequencing (RNA-Seq was performed to characterize the transcriptome of G. nigrifrons. A total of 38,240 ESTs of a minimum 100 bp were generated from two separate cDNA libraries consisting of virus transmitters and acquirers. More than 60% of known D. melanogaster, A. gambiae, T. castaneum immune response genes mapped to our G. nigrifrons EST database. Real time quantitative PCR (RT-qPCR showed significant down-regulation of three genes for peptidoglycan recognition proteins (PGRP - SB1, SD, and LC in G. nigrifrons transmitters versus control leafhoppers. CONCLUSIONS: Our study is the first to characterize the transcriptome of a leafhopper vector species. Significant sequence similarity in immune defense genes existed between G. nigrifrons and other well characterized insects. The down-regulation of PGRPs in MFSV transmitters suggested a possible role in rhabdovirus transmission. The results provide a framework for future studies aimed at elucidating the molecular mechanisms of plant virus vector competence.

  16. Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions.

    Science.gov (United States)

    van der Walt, Eric; Palmer, Kenneth E; Martin, Darren P; Rybicki, Edward P

    2008-05-20

    A variety of interactions between up to three different movement proteins (MPs), the coat protein (CP) and genomic DNA mediate the inter- and intra-cellular movement of geminiviruses in the genus Begomovirus. Although movement of viruses in the genus Mastrevirus is less well characterized, direct interactions between a single MP and the CP of these viruses is also clearly involved in both intra- and intercellular trafficking of virus genomic DNA. However, it is currently unknown how specific these MP-CP interactions are, nor how disruption of these interactions might impact on virus viability. Using chimaeric genomes of two strains of Maize streak virus (MSV) we adopted a genetic approach to investigate the gross biological effects of interfering with interactions between virus MP and CP homologues derived from genetically distinct MSV isolates. MP and CP genes were reciprocally exchanged, individually and in pairs, between maize (MSV-Kom)- and Setaria sp. (MSV-Set)-adapted isolates sharing 78% genome-wide sequence identity. All chimaeras were infectious in Zea mays c.v. Jubilee and were characterized in terms of symptomatology and infection efficiency. Compared with their parental viruses, all the chimaeras were attenuated in symptom severity, infection efficiency, and the rate at which symptoms appeared. The exchange of individual MP and CP genes resulted in lower infection efficiency and reduced symptom severity in comparison with exchanges of matched MP-CP pairs. Specific interactions between the mastrevirus MP and CP genes themselves and/or their expression products are important determinants of infection efficiency, rate of symptom development and symptom severity.

  17. Characterization of small interfering RNAs derived from Rice black streaked dwarf virus in infected maize plants by deep sequencing.

    Science.gov (United States)

    Li, Mingjun; Li, Yongqiang; Xia, Zihao; Di, Dianping; Zhang, Aihong; Miao, Hongqin; Zhou, Tao; Fan, Zaifeng

    2017-01-15

    Rice black streaked dwarf virus (RBSDV) is the casual agent of maize rough dwarf disease, which frequently causes severe yield loss in China. However, the interaction between RBSDV and maize plants is largely unknown. RNA silencing is a conserved mechanism against viruses in plants. To understand the antiviral RNA interfering response in RBSDV-infected plants, the profile of virus-derived small interfering RNAs (vsiRNAs) from RBSDV in infected maize plants was obtained by deep sequencing in this study. Our data showed that vsiRNAs, accumulated preferentially as 21- and 22-nucleotide (nt) species, were mapped against all 10 genomic RNA segments of RBSDV and derived almost equally overall from both positive and negative strands, while there were significant differences in the accumulation level of vsiRNAs from segments 2, 4, 6, 7 and 10. The vsiRNAs (21 and 22 nt) generated from each segment of RBSDV genome had a 5'-terminal nucleotide bias toward adenine and uracil. The single-nucleotide resolution maps showed that RBSDV-derived siRNAs preferentially distributed in the 5'- or 3'-terminal regions of several genomic segments. In addition, our results showed that the mRNA levels of some components involved in antiviral RNA silencing pathway were differentially modified during RBSDV infection. Among them, the accumulation levels of ZmDCL1, ZmDCL2, ZmDCL3a, ZmAGO1a, ZmAGO1b, ZmAGO2a, ZmAGO18a and ZmRDR6 mRNAs were significantly up-regulated, while those of ZmDCL3b, ZmDCL4 and ZmAGO1c mRNAs showed no obvious changes in RBSDV-infected maize plants. Copyright © 2016 Elsevier B.V. All rights reserved.

  18. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance.

    Science.gov (United States)

    Ali, N; Heslop-Harrison, Js Pat; Ahmad, H; Graybosch, R A; Hein, G L; Schwarzacher, T

    2016-08-01

    Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a cost-effective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chromatin in four genetically diverse populations of wheat (Triticum aestivum) lines incorporating chromosome segments from Thinopyrum intermedium and Secale cereale (rye). Out of 20 experimental lines, 10 carried Th. intermedium chromatin as T4DL*4Ai#2S translocations, while, unexpectedly, 7 lines were positive for alien chromatin (Th. intermedium or rye) on chromosome 1B. The newly described rye 1RS chromatin, transmitted from early in the pedigree, was associated with enhanced WSMV resistance. Under field conditions, the 1RS chromatin alone showed some resistance, while together with the Th. intermedium 4Ai#2S offered superior resistance to that demonstrated by the known resistant cultivar Mace. Most alien wheat lines carry whole chromosome arms, and it is notable that these lines showed intra-arm recombination within the 1BS arm. The translocation breakpoints between 1BS and alien chromatin fell in three categories: (i) at or near to the centromere, (ii) intercalary between markers UL-Thin5 and Xgwm1130 and (iii) towards the telomere between Xgwm0911 and Xbarc194. Labelled genomic Th. intermedium DNA hybridised to the rye 1RS chromatin under high stringency conditions, indicating the presence of shared tandem repeats among the cereals. The novel small alien fragments may explain the difficulty in developing well-adapted lines carrying Wsm1 despite improved tolerance to the virus. The results will facilitate directed chromosome engineering producing agronomically desirable WSMV-resistant germplasm.

  19. Cholesterol crystallization in human atherosclerosis is triggered in smooth muscle cells during the transition from fatty streak to fibroatheroma.

    Science.gov (United States)

    Ho-Tin-Noé, Benoît; Vo, Sophie; Bayles, Richard; Ferrière, Stephen; Ladjal, Hayette; Toumi, Sondes; Deschildre, Catherine; Ollivier, Véronique; Michel, Jean-Baptiste

    2017-04-01

    Recent studies have shown that in addition to being major constituents of the atheromatous core, solid cholesterol crystals (CCs) promote atherosclerotic lesion development and rupture by causing mechanical damage and exerting cytotoxic and pro-inflammatory effects. These findings suggest that targeting CCs might represent a therapeutic strategy for plaque stabilization. However, little is known about how cholesterol crystallization is initiated in human atherothrombotic disease. Here, we investigated these mechanisms. We performed a thorough immunohistological analysis of non-embedded, minimally processed human aortic tissues, combining polarized light and fluorescence microscopy. We found that CC formation was initiated during the fatty streak to fibroatheroma transition in tight association with the death of intralesional smooth muscle cells (SMCs). Cholesterol-loaded human SMCs were capable of producing CCs in vitro, a process that was enhanced by type I collagen and by inhibition of autophagy and cholesterol esterification. The fibrous transition, which was characterized by increased type I collagen expression, was associated with changes in the expression of autophagy and cholesterol flux-related genes, including a decrease in the autophagic adapter p62 and an increase in the cholesterol intracellular transporter Niemann-Pick C1. Collagen was identified as a potent inducer of these changes in SMCs. Collagen-induced changes in cholesterol metabolism and autophagy flux in smooth muscle foam cells at the fibrolipid transition likely contribute to initiate cholesterol crystallization in human atherosclerosis. Also, our data are in support of a protective role of autophagy against CC formation. Copyright © 2016 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd. Copyright © 2016 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

  20. Exploiting the combination of natural and genetically engineered resistance to cassava mosaic and cassava brown streak viruses impacting cassava production in Africa.

    Directory of Open Access Journals (Sweden)

    Hervé Vanderschuren

    Full Text Available Cassava brown streak disease (CBSD and cassava mosaic disease (CMD are currently two major viral diseases that severely reduce cassava production in large areas of Sub-Saharan Africa. Natural resistance has so far only been reported for CMD in cassava. CBSD is caused by two virus species, Cassava brown streak virus (CBSV and Ugandan cassava brown streak virus (UCBSV. A sequence of the CBSV coat protein (CP highly conserved between the two virus species was used to demonstrate that a CBSV-CP hairpin construct sufficed to generate immunity against both viral species in the cassava model cultivar (cv. 60444. Most of the transgenic lines showed high levels of resistance under increasing viral loads using a stringent top-grafting method of inoculation. No viral replication was observed in the resistant transgenic lines and they remained free of typical CBSD root symptoms 7 month post-infection. To generate transgenic cassava lines combining resistance to both CBSD and CMD the hairpin construct was transferred to a CMD-resistant farmer-preferred Nigerian landrace TME 7 (Oko-Iyawo. An adapted protocol allowed the efficient Agrobacterium-based transformation of TME 7 and the regeneration of transgenic lines with high levels of CBSV-CP hairpin-derived small RNAs. All transgenic TME 7 lines were immune to both CBSV and UCBSV infections. Further evaluation of the transgenic TME 7 lines revealed that CBSD resistance was maintained when plants were co-inoculated with East African cassava mosaic virus (EACMV, a geminivirus causing CMD. The innovative combination of natural and engineered virus resistance in farmer-preferred landraces will be particularly important to reducing the increasing impact of cassava viral diseases in Africa.

  1. Kimchi attenuates fatty streak formation in the aorta of low-density lipoprotein receptor knockout mice via inhibition of endoplasmic reticulum stress and apoptosis.

    Science.gov (United States)

    Woo, Minji; Kim, Mijeong; Noh, Jeong Sook; Park, Chan Hum; Song, Yeong Ok

    2017-12-01

    Endoplasmic reticulum (ER) stress is positively associated with atherosclerosis via elevating macrophage cell death and plaque formation, in which oxidative stress plays a pivotal role. Antioxidative, lipid-lowering, and anti-atherogenic effects of kimchi, a Korean fermented vegetable, have been established, wherein capsaicin, ascorbic acid, quercetin, 3-(4'-hydroxyl-3',5'-dimethoxyphenyl)propionic acid, and lactic acids were identified. In this study, mechanisms of action of kimchi methanol extracts (KME) on fatty streak formation via suppression of ER stress and apoptosis in aorta were examined in low-density lipoprotein receptor knockout mice. Mice fed a high cholesterol diet with an oral administration of KME (KME group, 200 mg·kg-bw -1 ·day -1 ) or distilled water (control group) for 8 weeks (n = 20 for group). Plasma lipid and oxidative stress levels were evaluated. Protein expression was measured by western blot assay. Fatty streak lesion size and the degree of apoptosis were examined in the aorta. Compared to the control group, in the KME group, plasma lipids levels were decreased and oxidative stress was alleviated ( P < 0.05). Protein expression levels of nuclear factor (erythroid-derived 2)-like 2-mediated antioxidants in aorta were increased whereas those for ER stress markers, glucose regulated protein 78, phospho-protein kinase RNA-like ER kinase, phospho-eukaryotic initiation factor 2 subunit α, X-box binding protein 1, and C/EBP homologous protein were decreased in the KME group ( P < 0.05). Moreover, apoptosis was suppressed via downregulation of phospho-c-Jun N-terminal kinase, bcl-2-associated X protein, caspases-9, and -3 with a concomitant upregulation of anti-apoptotic protein, B-cell lymphoma 2 ( P < 0.05). Fatty streak lesion size was reduced and the degree of apoptosis was less severe in the KME group ( P < 0.05). In conclusion, antioxidant activity of KME might prevent fatty streak formation through, in part, inhibition of ER stress and

  2. Replication and encapsidation of the viroid-like satellite RNA of lucerne transient streak virus are supported in divergent hosts by cocksfoot mottle virus and turnip rosette virus.

    Science.gov (United States)

    Sehgal, O P; Sinha, R C; Gellatly, D L; Ivanov, I; AbouHaidar, M G

    1993-04-01

    Cocksfoot mottle sobemovirus supports replication and encapsidation of the viroid-like satellite RNA (sat-RNA) of lucerne transient streak virus (LTSV) in two monocotyledonous species, Triticum aestivum and Dactylis glomerata. Additionally, LTSV sat-RNA replicates effectively in the presence of turnip rosette sobemovirus in Brassica rapa, Raphanus raphanistrum and Sinapsis arvensis, but not in Thlaspi arvense or Nicotiana bigelovii, indicating that host species markedly influence this interaction. Previous reports of the association between LTSV sat-RNA and helper sobemoviruses were limited to dicotyledonous hosts. Our results demonstrate that the biological interaction between these two entities spans divergent dicotyledonous and monocotyledonous species.

  3. Mycosphaerella fijiensis, the black leaf streak pathogen of banana: progress towards understanding pathogen biology and detection, disease development, and the challenges of control.

    Science.gov (United States)

    Churchill, Alice C L

    2011-05-01

    Banana (Musa spp.) is grown throughout the tropical and subtropical regions of the world. The fruits are a key staple food in many developing countries and a source of income for subsistence farmers. Bananas are also a major, multibillion-dollar export commodity for consumption primarily in developed countries, where few banana cultivars are grown. The fungal pathogen Mycosphaerella fijiensis causes black leaf streak disease (BLSD; aka black Sigatoka leaf spot) on the majority of edible banana cultivars grown worldwide. The fact that most of these cultivars are sterile and unsuitable for the breeding of resistant lines necessitates the extensive use of fungicides as the primary means of disease control. BLSD is a significant threat to the food security of resource-poor populations who cannot afford fungicides, and increases the environmental and health hazards where large-acreage monocultures of banana (Cavendish subgroup, AAA genome) are grown for export. Mycosphaerella fijiensis M. Morelet is a sexual, heterothallic fungus having Pseudocercospora fijiensis (M. Morelet) Deighton as the anamorph stage. It is a haploid, hemibiotrophic ascomycete within the class Dothideomycetes, order Capnodiales and family Mycosphaerellaceae. Its taxonomic placement is based on DNA phylogeny, morphological analyses and cultural characteristics. Mycosphaerella fijiensis is a leaf pathogen that causes reddish-brown streaks running parallel to the leaf veins, which aggregate to form larger, dark-brown to black compound streaks. These streaks eventually form fusiform or elliptical lesions that coalesce, form a water-soaked border with a yellow halo and, eventually, merge to cause extensive leaf necrosis. The disease does not kill the plants immediately, but weakens them by decreasing the photosynthetic capacity of leaves, causing a reduction in the quantity and quality of fruit, and inducing the premature ripening of fruit harvested from infected plants. Although Musa spp. are the

  4. Evaluation of dynamic range for LLNL streak cameras using high contrast pulses and pulse podiatry'' on the Nova laser system

    Energy Technology Data Exchange (ETDEWEB)

    Richards, J.B.; Weiland, T.L.; Prior, J.A.

    1990-07-01

    A standard LLNL streak camera has been used to analyze high contrast pulses on the Nova laser facility. These pulses have a plateau at their leading edge (foot) with an amplitude which is approximately 1% of the maximum pulse height. Relying on other features of the pulses and on signal multiplexing, we were able to determine how accurately the foot amplitude was being represented by the camera. Results indicate that the useful single channel dynamic range of the instrument approaches 100:1. 1 ref., 4 figs., 1 tab.

  5. Time- and wavelength-resolved luminescence evaluation of several types of scintillators using streak camera system equipped with pulsed X-ray source

    Energy Technology Data Exchange (ETDEWEB)

    Furuya, Yuki, E-mail: f.yuki@mail.tagen.tohoku.ac.j [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Yanagida, Takayuki; Fujimoto, Yutaka; Yokota, Yuui; Kamada, Kei [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Kawaguchi, Noriaki [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Research and Development Division, Tokuyama., Co. Ltd., ICR-Building, Minamiyoshinari, Aoba-ku, Sendai (Japan); Ishizu, Sumito [Research and Development Division, Tokuyama., Co. Ltd., ICR-Building, Minamiyoshinari, Aoba-ku, Sendai (Japan); Uchiyama, Koro; Mori, Kuniyoshi [Hamamatsu Photonics K.K., 325-6, Sunayama-cho, Naka-ku, Hamamatsu, Shizuoka 430-8587 (Japan); Kitano, Ken [Vacuum and Optical Instruments, 2-18-18 Shimomaruko, Ota, Tokyo 146-0092 (Japan); Nikl, Martin [Institute of Physics ASCR, Cukrovarnicka 10, Prague 6, 162-53 (Czech Republic); Yoshikawa, Akira [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); NICHe, Tohoku University, 6-6-10 Aoba, Aramaki, Aoba-ku, Sendai 980-8579 (Japan)

    2011-04-01

    To design new scintillating materials, it is very important to understand detailed information about the events, which occurred during the excitation and emission processes under the ionizing radiation excitation. We developed a streak camera system equipped with picosecond pulsed X-ray source to observe time- and wavelength-resolved scintillation events. In this report, we test the performance of this new system using several types of scintillators including bulk oxide/halide crystals, transparent ceramics, plastics and powders. For all samples, the results were consistent with those reported previously. The results demonstrated that the developed system is suitable for evaluation of the scintillation properties.

  6. Vascular Streak Dieback of cacao in Southeast Asia and Melanesia: in planta detection of the pathogen and a new taxonomy.

    Science.gov (United States)

    Samuels, Gary J; Ismaiel, Adnan; Rosmana, Ade; Junaid, Muhammad; Guest, David; McMahon, Peter; Keane, Philip; Purwantara, Agus; Lambert, Smilja; Rodriguez-Carres, Marianela; Cubeta, Marc A

    2012-01-01

    Vascular Streak Dieback (VSD) disease of cacao (Theobroma cacao) in Southeast Asia and Melanesia is caused by a basidiomycete (Ceratobasidiales) fungus Oncobasidium theobromae (syn. =Thanatephorus theobromae). The most characteristic symptoms of the disease are green-spotted leaf chlorosis or, commonly since about 2004, necrotic blotches, followed by senescence of leaves beginning on the second or third flush behind the shoot apex, and blackening of infected xylem in the vascular traces at the leaf scars resulting from the abscission of infected leaves. Eventually the shoot apex is killed and infected branches die. In susceptible cacao the fungus may grow through the xylem down into the main stem and kill a mature cacao tree. Infections in the stem of young plants prior to the formation of the first 3-4 lateral branches usually kill the plant. Basidiospores released from corticioid basidiomata developed on leaf scars or along cracks in the main vein of infected leaves infect young leaves. The pathogen commonly infects cacao but there are rare reports from avocado. As both crops are introduced to the region, the pathogen is suspected to occur asymptomatically in native vegetation. The pathogen is readily isolated but cultures cannot be maintained. In this study, DNA was extracted from pure cultures of O. theobromae obtained from infected cacao plants sampled from Indonesia. The internal transcribed spacer region (ITS), consisting of ITS1, 5.8S ribosomal RNA and ITS2, and a portion of nuclear large subunit (LSU) were sequenced. Phylogenetic analysis of ITS sequences placed O. theobromae sister to Ceratobasidium anastomosis groups AG-A, AG-Bo, and AG-K with high posterior probability. Therefore the new combination Ceratobasidium theobromae is proposed. A PCR-based protocol was developed to detect and identify C. theobromae in plant tissue of cacao enabling early detection of the pathogen in plants. A second species of Ceratobasidium, Ceratobasidium ramicola

  7. Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa.

    Science.gov (United States)

    Monjane, Adérito L; Harkins, Gordon W; Martin, Darren P; Lemey, Philippe; Lefeuvre, Pierre; Shepherd, Dionne N; Oluwafemi, Sunday; Simuyandi, Michelo; Zinga, Innocent; Komba, Ephrem K; Lakoutene, Didier P; Mandakombo, Noella; Mboukoulida, Joseph; Semballa, Silla; Tagne, Appolinaire; Tiendrébéogo, Fidèle; Erdmann, Julia B; van Antwerpen, Tania; Owor, Betty E; Flett, Bradley; Ramusi, Moses; Windram, Oliver P; Syed, Rizwan; Lett, Jean-Michel; Briddon, Rob W; Markham, Peter G; Rybicki, Edward P; Varsani, Arvind

    2011-09-01

    Maize streak virus strain A (MSV-A), the causal agent of maize streak disease, is today one of the most serious biotic threats to African food security. Determining where MSV-A originated and how it spread transcontinentally could yield valuable insights into its historical emergence as a crop pathogen. Similarly, determining where the major extant MSV-A lineages arose could identify geographical hot spots of MSV evolution. Here, we use model-based phylogeographic analyses of 353 fully sequenced MSV-A isolates to reconstruct a plausible history of MSV-A movements over the past 150 years. We show that since the probable emergence of MSV-A in southern Africa around 1863, the virus spread transcontinentally at an average rate of 32.5 km/year (95% highest probability density interval, 15.6 to 51.6 km/year). Using distinctive patterns of nucleotide variation caused by 20 unique intra-MSV-A recombination events, we tentatively classified the MSV-A isolates into 24 easily discernible lineages. Despite many of these lineages displaying distinct geographical distributions, it is apparent that almost all have emerged within the past 4 decades from either southern or east-central Africa. Collectively, our results suggest that regular analysis of MSV-A genomes within these diversification hot spots could be used to monitor the emergence of future MSV-A lineages that could affect maize cultivation in Africa.

  8. Large-Grazing-Angle, Multi-Image Kirkpatrick-Baez Microscope as the Front End to a High-Resolution Streak Camera for OMEGA

    International Nuclear Information System (INIS)

    Gotchev, O.V.; Hayes, L.J.; Jaanimagi, P.A.; Knauer, J.P.; Marshall, F.J.; Meyerhofer, D. D.

    2003-01-01

    (B204)A new, high-resolution x-ray microscope with a large grazing angle has been developed, characterized, and fielded at the Laboratory for Laser Energetics. It increases the sensitivity and spatial resolution in planar direct-drive hydrodynamic stability experiments, relevant to inertial confinement fusion (ICF) research. It has been designed to work as the optical front end of the PJX-a high-current, high-dynamic-range x-ray streak camera. Optical design optimization, results from numerical ray tracing, mirror-coating choice, and characterization have been described previously [O. V. Gotchev, et al./Rev. Sci. Instrum. 74, 2178 (2003)]. This work highlights the optics' unique mechanical design and flexibility and considers certain applications that benefit from it. Characterization of the microscope's resolution in terms of its modulation transfer function (MTF) over the field of view is shown. Recent results from hydrodynamic stability experiments, diagnosed with the optic and the PJX, are provided to confirm the microscope's advantages as a high-resolution, high-throughput x-ray optical front end for streaked imaging

  9. Large-grazing-angle, multi-image Kirkpatrick-Baez microscope as the front end to a high-resolution streak camera for OMEGA

    International Nuclear Information System (INIS)

    Gotchev, O.V.; Hayes, L.J.; Jaanimagi, P.A.; Knauer, J.P.; Marshall, F.J.; Meyerhofer, D.D.

    2003-01-01

    A high-resolution x-ray microscope with a large grazing angle has been developed, characterized, and fielded at the Laboratory for Laser Energetics. It increases the sensitivity and spatial resolution in planar direct-drive hydrodynamic stability experiments, relevant to inertial confinement fusion research. It has been designed to work as the optical front end of the PJX - a high-current, high-dynamic-range x-ray streak camera. Optical design optimization, results from numerical ray tracing, mirror-coating choice, and characterization have been described previously [O. V. Gotchev, et al., Rev. Sci. Instrum. 74, 2178 (2003)]. This work highlights the optics' unique mechanical design and flexibility and considers certain applications that benefit from it. Characterization of the microscope's resolution in terms of its modulation transfer function over the field of view is shown. Recent results from hydrodynamic stability experiments, diagnosed with the optic and the PJX, are provided to confirm the microscope's advantages as a high-resolution, high-throughput x-ray optical front end for streaked imaging

  10. Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.

    Directory of Open Access Journals (Sweden)

    Feng Sun

    Full Text Available Rice black-streaked dwarf virus (RBSDV, a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén. RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H2O2-dependent polymerization pathways.

  11. Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp).

    Science.gov (United States)

    Garcia, S A L; Van der Lee, T A J; Ferreira, C F; Te Lintel Hekkert, B; Zapater, M-F; Goodwin, S B; Guzmán, M; Kema, G H J; Souza, M T

    2010-11-09

    We searched the genome of Mycosphaerella fijiensis for molecular markers that would allow population genetics analysis of this plant pathogen. M. fijiensis, the causal agent of banana leaf streak disease, also known as black Sigatoka, is the most devastating pathogen attacking bananas (Musa spp). Recently, the entire genome sequence of M. fijiensis became available. We screened this database for VNTR markers. Forty-two primer pairs were selected for validation, based on repeat type and length and the number of repeat units. Five VNTR markers showing multiple alleles were validated with a reference set of isolates from different parts of the world and a population from a banana plantation in Costa Rica. Polymorphism information content values varied from 0.6414 to 0.7544 for the reference set and from 0.0400 and 0.7373 for the population set. Eighty percent of the polymorphism information content values were above 0.60, indicating that the markers are highly informative. These markers allowed robust scoring of agarose gels and proved to be useful for variability and population genetics studies. In conclusion, the strategy we developed to identify and validate VNTR markers is an efficient means to incorporate markers that can be used for fungicide resistance management and to develop breeding strategies to control banana black leaf streak disease. This is the first report of VNTR-minisatellites from the M. fijiensis genome sequence.

  12. Potential applications of a dual-sweep streak camera system for characterizing particle and photon beams of VUV, XUV, and x-ray FELS

    Energy Technology Data Exchange (ETDEWEB)

    Lumpkin, A. [Argonne National Lab., IL (United States)

    1995-12-31

    The success of time-resolved imaging techniques in the Characterization of particle beams and photon beams of the recent generation of L-band linac-driven or storage ring FELs in the infrared, visible, and ultraviolet wavelength regions can be extended to the VUV, XUV, and x-ray FELs. Tests and initial data have been obtained with the Hamamatsu C5680 dual-sweep streak camera system which includes a demountable photocathode (thin Au) assembly and a flange that allows windowless operation with the transport vacuum system. This system can be employed at wavelengths shorter than 100 nm and down to 1 {Angstrom}. First tests on such a system at 248-nm wavelengths have been performed oil the Argonne Wakefield Accelerator (AWA) drive laser source. A quartz window was used at the tube entrance aperture. A preliminary test using a Be window mounted on a different front flange of the streak tube to look at an x-ray bremsstrahlung source at the AWA was limited by photon statistics. This system`s limiting resolution of {sigma}{approximately}1.1 ps observed at 248 nm would increase with higher incoming photon energies to the photocathode. This effect is related to the fundamental spread in energies of the photoelectrons released from the photocathodes. Possible uses of the synchrotron radiation sources at the Advanced Photon Source and emerging short wavelength FELs to test the system will be presented.

  13. Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.

    Science.gov (United States)

    Sun, Feng; Yuan, Xia; Xu, Qiufang; Zhou, Tong; Fan, Yongjian; Zhou, Yijun

    2013-01-01

    Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén). RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE) were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H2O2-dependent polymerization pathways.

  14. A fast, noniterative approach for accelerated high-temporal resolution cine-CMR using dynamically interleaved streak removal in the power-spectral encoded domain with low-pass filtering (DISPEL) and modulo-prime spokes (MoPS).

    Science.gov (United States)

    Kawaji, Keigo; Patel, Mita B; Cantrell, Charles G; Tanaka, Akiko; Marino, Marco; Tamura, Satoshi; Wang, Hui; Wang, Yi; Carroll, Timothy J; Ota, Takeyoshi; Patel, Amit R

    2017-07-01

    To introduce a pair of accelerated non-Cartesian acquisition principles that when combined, exploit the periodicity of k-space acquisition, and thereby enable acquisition of high-temporal cine Cardiac Magnetic Resonance (CMR). The mathematical formulation of a noniterative, undersampled non-Cartesian cine acquisition and reconstruction is presented. First, a low-pass filtering step that exploits streaking artifact redundancy is provided (i.e., Dynamically Interleaved Streak removal in the Power-spectrum Encoded domain with Low-pass filtering [DISPEL]). Next, an effective radial acquisition for the DISPEL approach that exploits the property of prime numbers is described (i.e., Modulo-Prime Spoke [MoPS]). Both DISPEL and MoPS are examined using numerical simulation of a digital heart phantom to show that high-temporal cine-CMR is feasible without removing physiologic motion vs aperiodic interleaving using Golden Angles. The combined high-temporal cine approach is next examined in 11 healthy subjects for a time-volume curve assessment of left ventricular systolic and diastolic performance vs conventional Cartesian cine-CMR reference. The DISPEL method was first shown using simulation under different streak cycles to allow separation of undersampled radial streaking artifacts from physiologic motion with a sufficiently frequent streak-cycle interval. Radial interleaving with MoPS is next shown to allow interleaves with pseudo-Golden-Angle variants, and be more compatible with DISPEL against irrational and nonperiodic rotation angles, including the Golden-Angle-derived rotations. In the in vivo data, the proposed method showed no statistical difference in the systolic performance, while diastolic parameters sensitive to the cine's temporal resolution were statistically significant (P cine). We demonstrate a high-temporal resolution cine-CMR using DISPEL and MoPS, whose streaking artifact was separated from physiologic motion. © 2017 American Association of Physicists

  15. Synergistic interactions between an upper-level jet streak and diabatic processes that influence the development of a low-level jet and a secondary coastal cyclone

    Science.gov (United States)

    Uccellini, Louis W.; Petersen, Ralph A.; Kocin, Paul J.; Brill, Keith F.; Tuccillo, James J.

    1987-01-01

    A series of numerical simulations of the February 1979 Presidents Day cyclone is presented. The development of the low-level jet (LLJ) associated with the cyclone is described, and the mesoscale numerical model, initial analyses, and experimental design used in the study are discussed. Four numerical simulations are discussed and compared, including an adiabatic simulation that isolates the development of upper-level divergence along the axis of a subtropical jet streak and three other simulations that reveal the contributions of sensible and latent heat release in modifying lower-tropospheric wind fields and reducing the sea-level pressure. The formation of the LLJ is described through an evaluation of trajectories derived from the various model simulations. The effect of the LLJ on secondary cyclogenesis along the East Coast is described.

  16. Tobacco streak virus (strain dahlia) suppresses post-transcriptional gene silencing of flavone synthase II in black dahlia cultivars and causes a drastic flower color change.

    Science.gov (United States)

    Deguchi, Ayumi; Tatsuzawa, Fumi; Hosokawa, Munetaka; Doi, Motoaki; Ohno, Sho

    2015-09-01

    Tobacco streak virus suppressed post-transcriptional gene silencing and caused a flower color change in black dahlias, which supported the role of cyanidin-based anthocyanins for black flower appearance. Black flower color of dahlia (Dahlia variabilis) has been attributed, in part, to the high accumulation of cyanidin-based anthocyanins that occurs when flavone synthesis is reduced because of post-transcriptional gene silencing (PTGS) of flavone synthase II (DvFNS). There are also purple-flowering plants that have emerged from a black cultivar 'Kokucho'. We report that the purple color is not caused by a mutation, as previously thought, but by infection with tobacco streak virus (TSVdahlia), which suppresses the PTGS of DvFNS. When TSVdahlia was eliminated from the purple-flowering 'Kokucho' by leaf primordia-free shoot apical meristem culture, the resulting flowers were black. TSVdahlia-infected purple flowers had lower numbers of siRNAs to DvFNS than black flowers, suggesting that TSVdahlia has a silencing suppressor. The graft inoculation of other black cultivars with TSVdahlia altered their flower color drastically except for 'Fidalgo Blacky', a very deep black cultivar with the highest amount of cyanidin-based anthocyanins. The flowers of all six TSVdahlia-infected cultivars accumulated increased amounts of flavones and reduced amounts of cyanidin-based anthocyanins. 'Fidalgo Blacky' remained black despite the change in pigment accumulation, and the amounts of cyanidin-based anthocyanins in its TSVdahlia-infected plants were still higher than those of other cultivars. We propose that black flower color in dahlia is controlled by two different mechanisms that increase the amount of cyanidin-based anthocyanins: DvFNS PTGS-dependent and -independent mechanisms. If both mechanisms occur simultaneously, the flower color will be blacker than if only a single mechanism is active.

  17. Interaction Research on the Antiviral Molecule Dufulin Targeting on Southern Rice Black Streaked Dwarf Virus P9-1 Nonstructural Protein

    Directory of Open Access Journals (Sweden)

    Zhenchao Wang

    2015-03-01

    Full Text Available ern rice black streaked dwarf virus (SRBSDV causes severe harm to rice production. Unfortunately, studies on effective antiviral drugs against SRBSDV and interaction mechanism of antiviral molecule targeting on SRBSDV have not been reported. This study found dufulin (DFL, an ideal anti-SRBSDV molecule, and investigated the interactions of DFL targeting on the nonstructural protein P9-1. The biological sequence information and bonding characterization of DFL to four kinds of P9-1 protein were described with fluorescence titration (FT and microscale thermophoresis (MST assays. The sequence analysis indicated that P9-1 had highly-conserved C- and N-terminal amino acid residues and a hypervariable region that differed from 131 aa to 160 aa. Consequently, wild-type (WT-His-P9-1, 23 C-terminal residues truncated (TR-ΔC23-His-P9-1, 6 N-terminal residues truncated (TR-ΔN6-His-P9-1, and Ser138 site-directed (MU-138-His-P9-1 mutant proteins were expressed. The FT and MST assay results indicated that DFL bounded to WT-His-P9-1 with micromole affinity and the 23 C-terminal amino acids were the potential targeting site. This system, which combines a complete sequence analysis, mutant protein expression, and binding action evaluating system, could further advance the understanding of the interaction abilities between antiviral drugs and their targets.

  18. Molecular interactions and immune responses between Maize fine streak virus and the leafhopper vector Graminella nigrifrons through differential expression and RNA interference.

    Science.gov (United States)

    Chen, Y; Redinbaugh, M G; Michel, A P

    2015-06-01

    Graminella nigrifrons is the only known vector for Maize fine streak virus (MFSV). In this study, we used real-time quantitative PCR to compare the expression profiles of transcripts that putatively function in the insect immune response: four peptidoglycan recognition proteins (PGRP-SB1, -SD, -LC and LB), Toll, spaetzle, defensin, Dicer-2 (Dcr-2), Argonaut-2 (Ago-2) and Arsenic resistance protein 2 (Ars-2). Except for PGRP-LB and defensin, transcripts involved in humoral pathways were significantly suppressed in G. nigrifrons fed on MFSV-infected maize. The abundance of three RNA interference (RNAi) pathway transcripts (Dcr-2, Ago-2, Ars-2) was significantly lower in nontransmitting relative to transmitting G. nigrifrons. Injection with double-stranded RNA (dsRNA) encoding segments of the PGRP-LC and Dcr-2 transcripts effectively reduced transcript levels by 90 and 75% over 14 and 22 days, respectively. MFSV acquisition and transmission were not significantly affected by injection of either dsRNA. Knock-down of PGRP-LC resulted in significant mortality (greater than 90%) at 27 days postinjection, and resulted in more abnormal moults relative to those injected with Dcr-2 or control dsRNA. The use of RNAi to silence G. nigrifrons transcripts will facilitate the study of gene function and pathogen transmission, and may provide approaches for developing novel targets of RNAi-based pest control. © 2015 The Royal Entomological Society.

  19. The C-terminus of Wheat streak mosaic virus coat protein is involved in differential infection of wheat and maize through host-specific long-distance transport.

    Science.gov (United States)

    Tatineni, Satyanarayana; French, Roy

    2014-02-01

    Viral determinants and mechanisms involved in extension of host range of monocot-infecting viruses are poorly understood. Viral coat proteins (CP) serve many functions in almost every aspect of the virus life cycle. The role of the C-terminal region of Wheat streak mosaic virus (WSMV) CP in virus biology was examined by mutating six negatively charged aspartic acid residues at positions 216, 289, 290, 326, 333, and 334. All of these amino acid residues are dispensable for virion assembly, and aspartic acid residues at positions 216, 333, and 334 are expendable for normal infection of wheat and maize. However, mutants D289N, D289A, D290A, DD289/290NA, and D326A exhibited slow cell-to-cell movement in wheat, which resulted in delayed onset of systemic infection, followed by a rapid recovery of genomic RNA accumulation and symptom development. Mutants D289N, D289A, and D326A inefficiently infected maize, eliciting milder symptoms, while D290A and DD289/290NA failed to infect systemically, suggesting that the C-terminus of CP is involved in differential infection of wheat and maize. Mutation of aspartic acid residues at amino acid positions 289, 290, and 326 severely debilitated virus ingress into the vascular system of maize but not wheat, suggesting that these amino acids facilitate expansion of WSMV host range through host-specific long-distance transport.

  20. Identification and profiling of conserved and novel microRNAs in Laodelphax striatellus in response to rice black-streaked dwarf virus (RBSDV infection

    Directory of Open Access Journals (Sweden)

    Jun-Min Li

    2015-03-01

    Full Text Available MicroRNAs (miRNAs are small non-coding endogenous RNA molecules that play important roles in various biological processes. This study examined microRNA profiles of Laodelphax striatellus using the small RNA libraries derived from virus free (VF and rice black-streaked dwarf virus (RBSDV infected (RB insects. A total of 59 mature miRNAs (46 miRNA families were identified as conserved insect miRNAs in both VF and RB libraries. Among these conserved miRNAs, 24 were derived from the two arms of 12 miRNA precursors. Nine conserved L. striatellus miRNAs were up-regulated and 12 were down-regulated in response to RBSDV infection. In addition, a total of 20 potential novel miRNA candidates were predicted in the VF and RB libraries. The miRNA transcriptome profiles and the identification of L. striatellus miRNAs differentially expressed in response to RBSDV infection will contribute to future studies to elucidate the complex miRNA-mediated regulatory network activated by pathogen challenge in insect vectors.

  1. Genome-wide characterization of rice black streaked dwarf virus-responsive microRNAs in rice leaves and roots by small RNA and degradome sequencing.

    Science.gov (United States)

    Sun, Zongtao; He, Yuqing; Li, Junmin; Wang, Xu; Chen, Jianping

    2015-04-01

    MicroRNAs (miRNAs) are small, non-coding RNAs which typically function by guiding cleavage of target mRNAs. They play important roles in development, abiotic stress and responses to pathogens. Four small RNA libraries and four degradome libraries were constructed from the leaves and roots of healthy rice and plants infected with Rice black streaked dwarf virus (RBSDV). Analysis of the deep sequencing results showed that the expression patterns of 14 miRNAs in leaves and 16 miRNAs in roots changed significantly in response to RBSDV infection. Some responses were similar in roots and leaves, but many miRNAs responded differently in different tissues. The results were confirmed for selected miRNAs by quantitative real-time PCR. By using degradome sequencing, a total of 104 target transcripts for 17 conserved and 16 non-conserved miRNAs were shown to be responsive to RBSDV infection. Fifteen novel miRNAs were also identified by small RNA and degradome sequencing. The results provide new insights into the regulatory networks of miRNAs and their targets in different plant tissues in response to virus infection. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  2. Extended CT scale overcomes restoration caused streak artifacts for dental identification in CT--3D color encoded automatic discrimination of dental restorations.

    Science.gov (United States)

    Jackowski, C; Lussi, A; Classens, M; Kilchoer, T; Bolliger, S; Aghayev, E; Criste, A; Dirnhofer, R; Thali, M J

    2006-01-01

    Besides DNA, dental radiographs play a major role in the identification of victims in mass casualties or in corpses with major postmortem alterations. Computed tomography (CT) is increasingly applied in forensic investigations and is used to scan the dentition of deceased persons within minutes. We investigated different restoration materials concerning their radiopacity in CT for dental identification purposes. Extracted teeth with different filling materials (composite, amalgam, ceramic, temporary fillings) were CT scanned. Radiopacities of the filling materials were analyzed in extended CT scale images. Radiopacity values ranged from 6000-8500HU (temporary fillings), 4500-17000HU (composite fillings) and >30710HU (Amalgam and Gold). The values were used to define presets for a 3D colored volume rendering software. The effects of filling material caused streak artifacts could be distinctively reduced for the assessment of the dental status and a postprocessing algorithm was introduced that allows for 3D color encoded visualization and discrimination of different dental restorations based on postmortem CT data.

  3. An operon for production of bioactive gibberellin A4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola.

    Science.gov (United States)

    Nagel, Raimund; Turrini, Paula C G; Nett, Ryan S; Leach, Jan E; Verdier, Valérie; Van Sluys, Marie-Anne; Peters, Reuben J

    2017-05-01

    Phytopathogens have developed elaborate mechanisms to attenuate the defense response of their host plants, including convergent evolution of complex pathways for production of the GA phytohormones, which were actually first isolated from the rice fungal pathogen Gibberella fujikuroi. The rice bacterial pathogen Xanthomonas oryzae pv. oryzicola (Xoc) has been demonstrated to contain a biosynthetic operon with cyclases capable of producing the universal GA precursor ent-kaurene. Genetic (knock-out) studies indicate that the derived diterpenoid serves as a virulence factor for this rice leaf streak pathogen, serving to reduce the jasmonic acid-mediated defense response. Here the functions of the remaining genes in the Xoc operon are elucidated and the distribution of the operon in X. oryzae is investigated in over 100 isolates. The Xoc operon leads to production of the bioactive GA 4 , an additional step beyond production of the penultimate precursor GA 9 mediated by the homologous operons recently characterized from rhizobia. Moreover, this GA biosynthetic operon was found to be widespread in Xoc (> 90%), but absent in the other major X. oryzae pathovar. These results indicate selective pressure for production of GA 4 in the distinct lifestyle of Xoc, and the importance of GA to both fungal and bacterial pathogens of rice. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

  4. Assessment of reference gene stability in Rice stripe virus and Rice black streaked dwarf virus infection rice by quantitative Real-time PCR.

    Science.gov (United States)

    Fang, Peng; Lu, Rongfei; Sun, Feng; Lan, Ying; Shen, Wenbiao; Du, Linlin; Zhou, Yijun; Zhou, Tong

    2015-10-24

    Stably expressed reference gene(s) normalization is important for the understanding of gene expression patterns by quantitative Real-time PCR (RT-qPCR), particularly for Rice stripe virus (RSV) and Rice black streaked dwarf virus (RBSDV) that caused seriously damage on rice plants in China and Southeast Asia. The expression of fourteen common used reference genes of Oryza sativa L. were evaluated by RT-qPCR in RSV and RBSDV infected rice plants. Suitable normalization reference gene(s) were identified by geNorm and NormFinder algorithms. UBQ 10 + GAPDH and UBC + Actin1 were identified as suitable reference genes for RT-qPCR normalization under RSV and RBSDV infection, respectively. When using multiple reference genes, the expression patterns of OsPRIb and OsWRKY, two virus resistance genes, were approximately similar with that reported previously. Comparatively, by using single reference gene (TIP41-Like), a weaker inducible response was observed. We proposed that the combination of two reference genes could obtain more accurate and reliable normalization of RT-qPCR results in RSV- and RBSDV-infected plants. This work therefore sheds light on establishing a standardized RT-qPCR procedure in RSV- and RBSDV-infected rice plants, and might serve as an important point for discovering complex regulatory networks and identifying genes relevant to biological processes or implicated in virus.

  5. Behavior of occurrence of Banana Streak virus in in vitro propagated plants from cultivars of Musa hybrids FHIA-20 and FHIA-21

    Directory of Open Access Journals (Sweden)

    Orelvis Portal

    2004-07-01

    Full Text Available The losses taken place by the black and yellow Sigatoka have impelled the introduction to the country of the tetraploid hybrids from FHIA, however, at the present time, the high incidence of Banana Streak Virus in these hybrids is well known. To evaluate the effect of the micropropagatión process, on the fluctuations of the viral concentration in the tissue, they were introduced to the in vitro propagation positive and negative plants serologically tested of the cultivars FHIA 20 and 21, previously indexed in field (DAS-ELISA, later on they passed to phase of adaptation to evaluate the derived results of the diagnosis tests carried out after 3-6 months of transplanted. As a result of the DAS-ELISA carried out to the plants in phase of adaptation (37 22.2 % of the negative plants, indexed in field, was positive, while 68.4 % of the positive plants, indexed in field, was negative, in both cases all the plants were positive to the diagnosis for PCR. In some cases, given the implication of the obtained results, was used the ISEM as technique of diagnostic, for the corroboration of the same ones. Key Words: badnavirus, diagnostic, in vitro culture, Musa

  6. An alternative scanning protocol to eliminate perivenous streak artifacts in thoracic spiral computed tomography. The usefulness of ankle vein contrast injection

    International Nuclear Information System (INIS)

    Hara, Masaki; Ogino, Hiroyuki; Itoh, Masato; Ohba, Satoru; Andoh, Keiichi; Kitase, Masanori; Goodman, P.C.

    2001-01-01

    The purpose of this study was to eliminate perivenous streak artifact from contrast-enhanced thoracic spiral CT using superficial ankle vein injection (ankle vein method). Forty-four consecutive inpatients had thoracic spiral CT following ankle vein method and were compared to 30 patients who had conventional antecubital vein injection. Non-ionic 300 mg/mL contrast material were injected at 1-1.5 mL/sec with a power injector. Twenty mL of normal saline was injected immediately thereafter as a flushing bolus. Qualitative scores of perivenous artifact (1 to 5=extensive) and vascular enhancement (1 to 5=excellent) were recorded. Complications were investigated clinically. The mean score of perivenous artifact was 1 with the ankle vein method and 4.4 with the conventional method (P<.0001). Scores of pulmonary artery opacification were almost equal (4.2 and 4.5 respectively, P=.11). No complications were observed. The ankle vein method is an effective method to prevent perivenous artifact during thoracic spiral CT. (author)

  7. Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus.

    Directory of Open Access Journals (Sweden)

    Junmin Li

    Full Text Available Replication of RNA viruses in insect cells triggers an antiviral defense that is mediated by RNA interference (RNAi which generates viral-derived small interfering RNAs (siRNAs. However, it is not known whether an antiviral RNAi response is also induced in insects by reoviruses, whose double-stranded RNA genome replication is thought to occur within core particles. Deep sequencing of small RNAs showed that when the small brown planthopper (Laodelphax striatellus was infected by Rice black-streaked dwarf virus (RBSDV (Reoviridae; Fijivirus, more viral-derived siRNAs accumulated than when the vector insect was infected by Rice stripe virus (RSV, a negative single-stranded RNA virus. RBSDV siRNAs were predominantly 21 and 22 nucleotides long and there were almost equal numbers of positive and negative sense. RBSDV siRNAs were frequently generated from hotspots in the 5'- and 3'-terminal regions of viral genome segments but these hotspots were not associated with any predicted RNA secondary structures. Under laboratory condition, L. striatellus can be infected simultaneously with RBSDV and RSV. Double infection enhanced the accumulation of particular genome segments but not viral coat protein of RBSDV and correlated with an increase in the abundance of siRNAs derived from RBSDV. The results of this study suggest that reovirus replication in its insect vector potentially induces an RNAi-mediated antiviral response.

  8. Oxidative stress response of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in banana plants, to hydrogen peroxide and paraquat.

    Science.gov (United States)

    Beltrán-García, Miguel J; Manzo-Sanchez, Gilberto; Guzmán-González, Salvador; Arias-Castro, Carlos; Rodríguez-Mendiola, Martha; Avila-Miranda, Martin; Ogura, Tetsuya

    2009-07-01

    Mycosphaerella fijiensis causes black leaf streak disease in banana and plantain. This fungus is usually attacked by reactive oxygen species secreted by the plant or during exposure to fungicide, however, little is known about the antioxidant response of the fungus. In this study, mycelia were observed to totally decompose 30 mmol/L of hydrogen peroxide (H2O2) within 120 min, liberating oxygen bubbles, and also to survive in concentrations as high as 100 mmol/L H2O2. The oxidative stress responses to H2O2, paraquat, and hydroquinone were characterized in terms of the activities of catalase and superoxide dismutase (SOD). Two active catalase bands were seen in native PAGE induced by H2O2. Band I had monofunctional activity and band II had bifunctional catalase-peroxidase activity. Two isozymes of SOD, distinguishable by their cyanide sensitivity, were found; CuZnSOD was the main one. The combination of H2O2 and 3-aminotriazole reduced the accumulation of biomass up to 40% compared with exposure to H2O2 alone, suggesting that catalase is important for the rapid decomposition of H2O2 and has a direct bearing on cell viability. The results also suggest that the superoxide anion formed through the redox of paraquat and hydroquinone has a greater effect than H2O2 on the cellular viability of M. fijiensis.

  9. Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation.

    Science.gov (United States)

    Xu, Donglin; Zhou, Guohui

    2017-02-10

    Virus-derived siRNAs (vsiRNAs)-mediated RNA silencing plays important roles in interaction between plant viruses and their hosts. Southern rice black-streaked dwarf virus (SRBSDV) is a newly emerged devastating rice reovirus with ten dsRNA genomic segments. The characteristics of SRBSDV-derived siRNAs and their biological implications in SRBSDV-rice interaction remain unexplored. VsiRNAs profiling from SRBSDV-infected rice samples was done via small RNA deep sequencing. The putative rice targets of abundantly expressed vsiRNAs were bioinformatically predicted and subjected to functional annotation. Differential expression analysis of rice targets and RNA silencing components between infected and healthy samples was done using RT-qPCR. The vsiRNA was barely detectable at 14 days post infection (dpi) but abundantly present along with elevated expression level of the viral genome at 28 dpi. From the 28-dpi sample, 70,878 reads of 18 ~ 30-nt vsiRNAs were recognized (which mostly were 21-nt and 22-nt), covering 75 ~ 91% of the length of the ten genomic segments respectively. 86% of the vsiRNAs had a siRNA pathways.

  10. Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus.

    Science.gov (United States)

    Li, Junmin; Andika, Ida Bagus; Shen, Jiangfeng; Lv, Yuanda; Ji, Yongqiang; Sun, Liying; Chen, Jianping

    2013-01-01

    Replication of RNA viruses in insect cells triggers an antiviral defense that is mediated by RNA interference (RNAi) which generates viral-derived small interfering RNAs (siRNAs). However, it is not known whether an antiviral RNAi response is also induced in insects by reoviruses, whose double-stranded RNA genome replication is thought to occur within core particles. Deep sequencing of small RNAs showed that when the small brown planthopper (Laodelphax striatellus) was infected by Rice black-streaked dwarf virus (RBSDV) (Reoviridae; Fijivirus), more viral-derived siRNAs accumulated than when the vector insect was infected by Rice stripe virus (RSV), a negative single-stranded RNA virus. RBSDV siRNAs were predominantly 21 and 22 nucleotides long and there were almost equal numbers of positive and negative sense. RBSDV siRNAs were frequently generated from hotspots in the 5'- and 3'-terminal regions of viral genome segments but these hotspots were not associated with any predicted RNA secondary structures. Under laboratory condition, L. striatellus can be infected simultaneously with RBSDV and RSV. Double infection enhanced the accumulation of particular genome segments but not viral coat protein of RBSDV and correlated with an increase in the abundance of siRNAs derived from RBSDV. The results of this study suggest that reovirus replication in its insect vector potentially induces an RNAi-mediated antiviral response.

  11. A role for the hypoblast (AVE) in the initiation of neural induction, independent of its ability to position the primitive streak.

    Science.gov (United States)

    Albazerchi, Amanda; Stern, Claudio D

    2007-01-15

    The mouse anterior visceral endoderm (AVE) has been implicated in embryonic polarity: it helps to position the primitive streak and some have suggested that it might act as a "head organizer", inducing forebrain directly. Here we explore the role of the hypoblast (the chick equivalent of the AVE) in the early steps of neural induction and patterning. We report that the hypoblast can induce a set of very early markers that are later expressed in the nervous system and in the forebrain, but only transiently. Different combinations of signals are responsible for different aspects of this early transient induction: FGF initiates expression of Sox3 and ERNI, retinoic acid can induce Cyp26A1 and only a combination of low levels of FGF8 together with Wnt- and BMP-antagonists can induce Otx2. BMP- and Wnt-antagonists and retinoic acid, in different combinations, can maintain the otherwise transient induction of these markers. However, neither the hypoblast nor any of these factors or combinations thereof can induce the definitive neural marker Sox2 or the formation of a mature neural plate or a forebrain, suggesting that the hypoblast is not a head organizer and that other signals remain to be identified. Interestingly, FGF and retinoids, generally considered as caudalizing factors, are shown here to play a role in the induction of a transient "pre-neural/pre-forebrain" state.

  12. Functional replacement of Wheat streak mosaic virus HC-Pro with the corresponding cistron from a diverse array of viruses in the family Potyviridae

    International Nuclear Information System (INIS)

    Stenger, Drake C.; French, Roy

    2004-01-01

    Helper component-proteinase (HC-Pro) of Wheat streak mosaic virus strain Sidney 81 (WSMV-Sidney 81) was systematically replaced with the corresponding cistron derived from four strains of WSMV (Type, TK1, CZ, and El Batan 3), the tritimovirus Oat necrotic mottle virus (ONMV), the rymoviruses Agropyron mosaic virus (AgMV) and Hordeum mosaic virus (HoMV), or the potyviruses Tobacco etch virus (TEV) and Turnip mosaic virus (TuMV). These HC-Pro proteins varied in amino acid sequence identity shared with HC-Pro of WSMV-Sidney 81 from high (strains of WSMV at ∼86-99%) to moderate (ONMV at 70%) to low (rymoviruses and potyviruses at ∼15-17%). Surprisingly, all chimeric viral genomes examined were capable of systemic infection of wheat upon inoculation with RNA transcripts produced in vitro. HC-Pro replacements derived from tritimoviruses did not alter host range relative to WSMV-Sidney 81, as each of these chimeric viruses was able to systemically infect wheat, oat, and corn line SDp2. These results indicate that differences in host range among tritimoviruses, including the inability of ONMV to infect wheat or the inability of WSMV strains Type and El Batan 3 to infect SDp2 corn, are not determined by HC-Pro. In contrast, all chimeric viruses bearing HC-Pro replacements derived from rymoviruses or potyviruses were unable to infect SDp2 corn and oat. Collectively, these results indicate that HC-Pro from distantly related virus species of the family Potyviridae are competent to provide WSMV-Sidney 81 with all functions necessary for infection of a permissive host (wheat) and that virus-host interactions required for systemic infection of oat and SDp2 corn are more stringent. Changes in symptom severity or mechanical transmission efficiency observed for some chimeric viruses further suggest that HC-Pro affects virulence in WSMV

  13. Population structure within lineages of Wheat streak mosaic virus derived from a common founding event exhibits stochastic variation inconsistent with the deterministic quasi-species model

    International Nuclear Information System (INIS)

    French, Roy; Stenger, Drake C.

    2005-01-01

    Structure of Wheat streak mosaic virus (WSMV) populations derived from a common founding event and subjected to serial passage at high multiplicity of infection (MOI) was evaluated. The founding population was generated by limiting dilution inoculation. Lineages of known pedigree were sampled at passage 9 (two populations) and at passage 15, with (three populations) or without mixing (four populations) of lineages at passage 10. Polymorphism within each population was assessed by sequencing 17-21 clones containing a 1371 nt region (WSMV-Sidney 81 nts 8001-9371) encompassing the entire coat protein cistron and flanking regions. Mutation frequency averaged ∼5.0 x 10 -4 /nt across all populations and ranged from 2.4 to 11.6 x 10 -4 /nt within populations, but did not consistently increase or decrease with the number of passages removed from the founding population. Shared substitutions (19 nonsynonymous, 10 synonymous, and 3 noncoding) occurred at 32 sites among 44 haplotypes. Only four substitutions became fixed (frequency = 100%) within a population and nearly one third (10/32) never achieved a frequency of 10% or greater in any sampled population. Shared substitutions were randomly distributed with respect to genome position, with transitions outnumbering transversions 5.4:1 and a clear bias for A to G and U to C substitutions. Haplotype composition of each population was unique with complexity of each population varying unpredictably, in that the number and frequency of haplotypes within a lineage were not correlated with number of passages removed from the founding population or whether the population was derived from a single or mixed lineage. The simplest explanation is that plant virus lineages, even those propagated at high MOI, are subject to frequent, narrow genetic bottlenecks during systemic movement that result in low effective population size and stochastic changes in population structure upon serial passage

  14. Heritable, de novo resistance to leaf rust and other novel traits in selfed descendants of wheat responding to inoculation with wheat streak mosaic virus.

    Science.gov (United States)

    Seifers, Dallas L; Haber, Steve; Martin, Terry J; McCallum, Brent D

    2014-01-01

    Stable resistance to infection with Wheat streak mosaic virus (WSMV) can be evolved de novo in selfing bread wheat lines subjected to cycles of WSMV inoculation and selection of best-performing plants or tillers. To learn whether this phenomenon might be applied to evolve resistance de novo to pathogens unrelated to WSMV, we examined the responses to leaf rust of succeeding generations of the rust- and WSMV-susceptible cultivar 'Lakin' following WSMV inoculation and derived rust-resistant sublines. After three cycles of the iterative protocol five plants, in contrast to all others, expressed resistance to leaf and stripe rust. A subset of descendant sublines of one of these, 'R1', heritably and uniformly expressed the new trait of resistance to leaf rust. Such sublines, into which no genes from a known source of resistance had been introgressed, conferred resistance to progeny of crosses with susceptible parents. The F1 populations produced from crosses between, respectively, susceptible and resistant 'Lakin' sublines 4-3-3 and 4-12-3 were not all uniform in their response to seedling inoculation with race TDBG. In seedling tests against TDBG and MKPS races the F2s from F1 populations that were uniformly resistant had 3∶1 ratios of resistant to susceptible individuals but the F2s from susceptible F1 progenitors were uniformly susceptible. True-breeding lines derived from resistant individuals in F2 populations were resistant to natural stripe and leaf rust inoculum in the field, while the 'Lakin' progenitor was susceptible. The next generation of six of the 'Lakin'-derived lines exhibited moderate to strong de novo resistance to stem rust races TPMK, QFCS and RKQQ in seedling tests while the 'Lakin' progenitor was susceptible. These apparently epigenetic effects in response to virus infection may help researchers fashion a new tool that expands the range of genetic resources already available in adapted germplasm.

  15. Behavioral responses of the leafhopper, Cicadulina storeyi China, a major vector of maize streak virus, to volatile cues from intact and leafhopper-damaged maize.

    Science.gov (United States)

    Oluwafemi, Sunday; Bruce, Toby J A; Pickett, John A; Ton, Jurriaan; Birkett, Michael A

    2011-01-01

    The chemical ecology of the leafhopper, Cicadulina storeyi China (Homoptera: Cicadellidae), an important vector of Maize Streak Virus (MSV), was studied with a view to developing novel leafhopper control strategies in sub-Saharan Africa. Choice tests using a Y-tube olfactometer revealed that odors from uninfested maize seedlings (Zea mays cv. Delprim) were significantly more attractive to C. storeyi than odors from C. storeyi-infested seedlings. Headspace samples of volatile organic compounds (VOCs) collected from 10 to 12 day-old uninfested seedlings were more attractive than those collected from infested seedlings. While VOCs collected from uninfested maize seedlings were attractive, VOCs collected from C. storeyi-infested seedlings were significantly repellent. Analysis of the collected VOCs by gas chromatography (GC) and coupled GC-mass spectrometry (GC-MS) led to the identification of myrcene, linalool, (E)-2-decen-1-ol, and decanal from uninfested seedlings, and (Z)-3-hexenyl acetate, (E)-4,8-dimethyl-1,3,7-nonatriene (DMNT), methyl salicylate, benzyl acetate, indole, geranyl acetate, (E)-caryophyllene, α-bergamotene, (E)-β-farnesene, β-sesquiphellandrene, and (E,E)-4,8,12-trimethyl-1,3,7,11-tridecatetraene (TMTT) from infested seedlings. Of these, methyl salicylate, (E)-caryophyllene, (E)-β-farnesene, and TMTT were identified previously as volatile semiochemicals involved in plant defense against other sucking insect pests. When tested individually for behavioral activity, all compounds were repellent for C. storeyi. Moreover, when these induced VOCs were added to the blend of VOCs from uninfested maize seedlings, a shift from attraction to repellency was observed. Addition of methyl salicylate, (E)-β-farnesene, or TMTT resulted in a choice for the solvent control (i.e., repulsion), whereas addition of (E)-caryophyllene resulted in no reduction in host VOC attractiveness. These results show that VOCs induced in maize have the potential to be exploited

  16. Fine mapping of Msv1, a major QTL for resistance to Maize Streak Virus leads to development of production markers for breeding pipelines.

    Science.gov (United States)

    Nair, Sudha K; Babu, Raman; Magorokosho, Cosmos; Mahuku, George; Semagn, Kassa; Beyene, Yoseph; Das, Biswanath; Makumbi, Dan; Lava Kumar, P; Olsen, Michael; Boddupalli, Prasanna M

    2015-09-01

    Msv1 , the major QTL for MSV resistance was delimited to an interval of 0.87 cM on chromosome 1 at 87 Mb and production markers with high prediction accuracy were developed. Maize streak virus (MSV) disease is a devastating disease in the Sub-Saharan Africa (SSA), which causes significant yield loss in maize. Resistance to MSV has previously been mapped to a major QTL (Msv1) on chromosome 1 that is germplasm and environment independent and to several minor loci elsewhere in the genome. In this study, Msv1 was fine-mapped through QTL isogenic recombinant strategy using a large F 2 population of CML206 × CML312 to an interval of 0.87 cM on chromosome 1. Genome-wide association study was conducted in the DTMA (Drought Tolerant Maize for Africa)-Association mapping panel with 278 tropical/sub-tropical breeding lines from CIMMYT using the high-density genotyping-by-sequencing (GBS) markers. This study identified 19 SNPs in the region between 82 and 93 Mb on chromosome 1(B73 RefGen_V2) at a P < 1.00E-04, which coincided with the fine-mapped region of Msv1. Haplotype trend regression identified a haplotype block significantly associated with response to MSV. Three SNPs in this haplotype block at 87 Mb on chromosome 1 had an accuracy of 0.94 in predicting the disease reaction in a collection of breeding lines with known responses to MSV infection. In two biparental populations, selection for resistant Msv1 haplotype demonstrated a reduction of 1.03-1.39 units on a rating scale of 1-5, compared to the susceptible haplotype. High-throughput KASP assays have been developed for these three SNPs to enable routine marker screening in the breeding pipeline for MSV resistance.

  17. 4D display of the outflow track of embryonic-chick hearts (HH 14-19) using a high speed streak mode OCT

    Science.gov (United States)

    Ma, Siyu; Wang, Rui; Goodwin, Richard L.; Markwald, Roger R.; Borg, Thomas K.; Runyan, Raymond B.; Gao, Zhi

    2013-02-01

    Congenital Heart Disease (CHD) is the most common congenital malformation in newborns in the US. Although knowledge of CHD is limited, altered hemodynamic conditions are suspected as the factor that stimulates cardiovascular cell response, resulting in the heart morphology remodeling that ultimately causes CHDs. Therefore, one of recent efforts in CHD study is to develop high-speed imaging tools to correlate the rapidly changing hemodynamic condition and the morphological adaptations of an embryonic heart in vivo. We have developed a high-speed streak mode OCT that works at the center wavelength of 830 nm and is capable of providing images (292x220 μm2) of the outflow tract of an embryonic chick heart at the rate of 1000 Hz. The modality can provide a voxel resolution in the range of 10 μm3, and the spectral resolution allows a depth range of 1.63 mm. In the study reported here, each of the 4D images of an outflow tract was recorded for 2 seconds. The recording was conducted every 2 hours (HH17 to HH18), 3 hours (HH14 to HH17), and 4 hours (HH18 to HH19). Because of the fast scan speed, there is no need for postacquisition processing such as use of gating techniques to provide a fine 3D structure. In addition, more details of the outflow tract are preserved in the recorded images. The 4D images can be used in the future to determine the role of blood flow in CHD development.

  18. Heritable, de novo resistance to leaf rust and other novel traits in selfed descendants of wheat responding to inoculation with wheat streak mosaic virus.

    Directory of Open Access Journals (Sweden)

    Dallas L Seifers

    Full Text Available Stable resistance to infection with Wheat streak mosaic virus (WSMV can be evolved de novo in selfing bread wheat lines subjected to cycles of WSMV inoculation and selection of best-performing plants or tillers. To learn whether this phenomenon might be applied to evolve resistance de novo to pathogens unrelated to WSMV, we examined the responses to leaf rust of succeeding generations of the rust- and WSMV-susceptible cultivar 'Lakin' following WSMV inoculation and derived rust-resistant sublines. After three cycles of the iterative protocol five plants, in contrast to all others, expressed resistance to leaf and stripe rust. A subset of descendant sublines of one of these, 'R1', heritably and uniformly expressed the new trait of resistance to leaf rust. Such sublines, into which no genes from a known source of resistance had been introgressed, conferred resistance to progeny of crosses with susceptible parents. The F1 populations produced from crosses between, respectively, susceptible and resistant 'Lakin' sublines 4-3-3 and 4-12-3 were not all uniform in their response to seedling inoculation with race TDBG. In seedling tests against TDBG and MKPS races the F2s from F1 populations that were uniformly resistant had 3∶1 ratios of resistant to susceptible individuals but the F2s from susceptible F1 progenitors were uniformly susceptible. True-breeding lines derived from resistant individuals in F2 populations were resistant to natural stripe and leaf rust inoculum in the field, while the 'Lakin' progenitor was susceptible. The next generation of six of the 'Lakin'-derived lines exhibited moderate to strong de novo resistance to stem rust races TPMK, QFCS and RKQQ in seedling tests while the 'Lakin' progenitor was susceptible. These apparently epigenetic effects in response to virus infection may help researchers fashion a new tool that expands the range of genetic resources already available in adapted germplasm.

  19. Manual versus automated streaking system in clinical microbiology laboratory: Performance evaluation of Previ Isola for blood culture and body fluid samples.

    Science.gov (United States)

    Choi, Qute; Kim, Hyun Jin; Kim, Jong Wan; Kwon, Gye Cheol; Koo, Sun Hoe

    2018-01-04

    The process of plate streaking has been automated to improve routine workflow of clinical microbiology laboratories. Although there were many evaluation reports about the inoculation of various body fluid samples, few evaluations have been reported for blood. In this study, we evaluated the performance of automated inoculating system, Previ Isola for various routine clinical samples including blood. Blood culture, body fluid, and urine samples were collected. All samples were inoculated on both sheep blood agar plate (BAP) and MacConkey agar plate (MCK) using Previ Isola and manual method. We compared two methods in aspect of quality and quantity of cultures, and sample processing time. To ensure objective colony counting, an enumeration reading reference was made through a preliminary experiment. A total of 377 nonduplicate samples (102 blood culture, 203 urine, 72 body fluid) were collected and inoculated. The concordance rate of quality was 100%, 97.0%, and 98.6% in blood, urine, and other body fluids, respectively. In quantitative aspect, it was 98.0%, 97.0%, and 95.8%, respectively. The Previ Isola took a little longer to inoculate the specimen than manual method, but the hands-on time decreased dramatically. The shortened hands-on time using Previ Isola was about 6 minutes per 10 samples. We demonstrated that the Previ Isola showed high concordance with the manual method in the inoculation of various body fluids, especially in blood culture sample. The use of Previ Isola in clinical microbiology laboratories is expected to save considerable time and human resources. © 2018 Wiley Periodicals, Inc.

  20. Risca do tomateiro em São Paulo, causada por estirpe do vírus Y Tomato streak induced by a strain of the potato virus y in São Paulo

    Directory of Open Access Journals (Sweden)

    A. S. Costa

    1960-01-01

    Full Text Available Uma forma de risca do tomateiro, causada por um único vírus que pertence ao complexo do vírus Y da batatinha, foi registrada em diversas zonas do Estado de São Paulo onde é cultivada essa planta. A risca do tomateiro é considerada moléstia diferente daquela descrita de Piedade e também causada por uma estirpe do mesmo complexo. Foram notadas diferenças em sintomatologia, círculo de hospedeiras e nas propriedades do vírus in vitro. A risca do tomateiro em São Paulo é semelhante a uma moléstia que foi descrita em tomatais do sul da Flórida. 0 vírus da risca causa murcha das folhas inferiores de plantas de fumo de diversas variedades. Esse sintoma já tinha sido descrito em plantas de fumo infetadas com o vírus das faixas das nervuras em Kentucky. Foi notada certa correlação entre surtos severos da risca do tomateiro e a presença de plantações velhas de pimentão nas vizinhanças dos tomatais. As plantações de batata não são consideradas como fontes de vírus, pois a maioria das variedades comerciais não é suscetível à estirpe causadora da risca. A risca do tomateiro é fàcilmente transmitida mecanicamente e há indicações de que uma certa disseminação da moléstia pode resultar das operações culturais manuais como a desbrota, amarração etc. Os afídios Aphis rumicis, Myzus persicae, Macro-siphum solanifotii e Pentatrichopus fragaefolii mostraram-se capazes de transmitir a risca. Medidas de contrôle visando eliminar as fontes de vírus e controlar os vectores são discutidas.A type of tomato streak due to a single virus, considered to be a strain of the potato virus Y complex, has been recorded from several tomato growing areas in the state of São Paulo. Tomato streak is considered different from a disease described from Piedade and also caused by a strain of potato virus Y. Differences were noted in symptomatology, host range, and virus properties. Tomato streak in São Paulo resembles closely a disease

  1. Presence of poly(A) tails at the 3'-termini of some mRNAs of a double-stranded RNA virus, southern rice black-streaked dwarf virus.

    Science.gov (United States)

    He, Ming; Jiang, Ziqiong; Li, Shuo; He, Peng

    2015-03-31

    Southern rice black-streaked dwarf virus (SRBSDV), a new member of the genus Fijivirus, is a double-stranded RNA virus known to lack poly(A) tails. We now showed that some of SRBSDV mRNAs were indeed polyadenylated at the 3' terminus in plant hosts, and investigated the nature of 3' poly(A) tails. The non-abundant presence of SRBSDV mRNAs bearing polyadenylate tails suggested that these viral RNA were subjected to polyadenylation-stimulated degradation. The discovery of poly(A) tails in different families of viruses implies potentially a wide occurrence of the polyadenylation-assisted RNA degradation in viruses.

  2. Heritable, De Novo Resistance to Leaf Rust and Other Novel Traits in Selfed Descendants of Wheat Responding to Inoculation with Wheat Streak Mosaic Virus

    Science.gov (United States)

    Seifers, Dallas L.; Haber, Steve; Martin, Terry J.; McCallum, Brent D.

    2014-01-01

    Stable resistance to infection with Wheat streak mosaic virus (WSMV) can be evolved de novo in selfing bread wheat lines subjected to cycles of WSMV inoculation and selection of best-performing plants or tillers. To learn whether this phenomenon might be applied to evolve resistance de novo to pathogens unrelated to WSMV, we examined the responses to leaf rust of succeeding generations of the rust- and WSMV-susceptible cultivar ‘Lakin’ following WSMV inoculation and derived rust-resistant sublines. After three cycles of the iterative protocol five plants, in contrast to all others, expressed resistance to leaf and stripe rust. A subset of descendant sublines of one of these, ‘R1’, heritably and uniformly expressed the new trait of resistance to leaf rust. Such sublines, into which no genes from a known source of resistance had been introgressed, conferred resistance to progeny of crosses with susceptible parents. The F1 populations produced from crosses between, respectively, susceptible and resistant ‘Lakin’ sublines 4-3-3 and 4-12-3 were not all uniform in their response to seedling inoculation with race TDBG. In seedling tests against TDBG and MKPS races the F2s from F1 populations that were uniformly resistant had 3∶1 ratios of resistant to susceptible individuals but the F2s from susceptible F1 progenitors were uniformly susceptible. True-breeding lines derived from resistant individuals in F2 populations were resistant to natural stripe and leaf rust inoculum in the field, while the ‘Lakin’ progenitor was susceptible. The next generation of six of the ‘Lakin’-derived lines exhibited moderate to strong de novo resistance to stem rust races TPMK, QFCS and RKQQ in seedling tests while the ‘Lakin’ progenitor was susceptible. These apparently epigenetic effects in response to virus infection may help researchers fashion a new tool that expands the range of genetic resources already available in adapted germplasm. PMID:24497941

  3. Improvements in streaking nuclear reactors

    International Nuclear Information System (INIS)

    Pedrick, A.P.

    1976-01-01

    In this type of reactor atomic nuclei are stripped of their electron shells by heating to form a very high temperature plasma which is passed at high speed through a chamber in which they are forced into contact with a 'wall' formed by a unidirectional stream of photons from continuous laser beams. In this way it should be possible to brush off from the surface of the nuclei protons and neutrons, with release of their binding energy. The energy thus produced can be subjected to much more gentle control than with a fission or fusion reactor. Furthermore, if this concept can be successfully applied to elements of high atomic number which are normally regarded as stable and unfissionable, a vast new source of nuclear energy release will have been made available. It also seems possible that an atomic nucleus might be spun sufficiently in such a reactor to disintegrate it completely into nucleons by simple centrifugal action, with great release of binding energy. The reactor described has a central body with radial ducts through which the nuclei are passed, and a number of lasers are provided whose beams are arranged so that the nuclei are discharged at the cross-over point of two or more laser beams which form a corner at the junction of two or more photon walls. (U.K.)

  4. Dinâmica temporal e espacial da begomovirose causada por Tomato yellow vein streak virus em tomateiro na região de Campinas-SP Spatio-temporal pattern of a begomovirus disease caused by Tomato yellow vein streak virus in tomato in Campinas region, São Paulo

    Directory of Open Access Journals (Sweden)

    Marilia Gabriela Salveti Della Vecchia

    2007-12-01

    Full Text Available O objetivo desse trabalho foi caracterizar os padrões temporal e espacial do Tomato yellow vein streak virus (ToYVSV em tomatais cultivados em condições de campo, no município de Sumaré, e de estufa plástica, na região de Elias Fausto, Estado de São Paulo. No ensaio de campo, plantado com a variedade Alambra, foram avaliadas 4.032 plantas, distribuídas em oito blocos. Em oito estufas plásticas, com plantios escalonados da variedade Ikram, foram avaliadas 6.016 plantas. As avaliações foram feitas com base nos sintomas característicos induzidos por esse vírus. A confirmação da identidade do vírus foi feita por meio da análise da seqüência de nucleotídeos de parte do DNA-A viral (genes AV1 e AC3. No ensaio em condições de campo, a incidência da doença evoluiu lentamente, desde um mínimo de 0,002 (proporção de plantas sintomáticas até um máximo de 0,0497. Mesmo assim, foi possível constatar um efeito de borda, pois a incidência média de plantas doentes nos blocos situados nos bordos da área foi 2,1 vezes maior do que naqueles internos. O progresso da incidência da doença foi linear, o que indica que novas infecções foram devidas principalmente a um influxo constante de vetores virulíferos de fora para dentro da área avaliada. Nos plantios em estufas plásticas, os níveis finais de doença foram fortemente dependentes da época de plantio, com médias variando de 4,8% a 69,3%. A distribuição espacial de plantas sintomáticas nesses plantios foi fortemente agregada. Essa agregação provavelmente não se deve a infecções secundárias dentro das estufas plásticas, mas sim à concentração de plantas sintomáticas nos bordos das estufas, conseqüência da migração de vetores virulíferos a partir de áreas externas à estufa. Com base nesses resultados, sugere-se a eliminação de fontes de inóculo representadas por plantios mais velhos de tomateiro e por hospedeiras do vírus na vegetação espont

  5. Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes.

    Science.gov (United States)

    Owor, Betty E; Shepherd, Dionne N; Taylor, Nigel J; Edema, Richard; Monjane, Adérito L; Thomson, Jennifer A; Martin, Darren P; Varsani, Arvind

    2007-03-01

    Leaf samples from 155 maize streak virus (MSV)-infected maize plants were collected from 155 farmers' fields in 23 districts in Uganda in May/June 2005 by leaf-pressing infected samples onto FTA Classic Cards. Viral DNA was successfully extracted from cards stored at room temperature for 9 months. The diversity of 127 MSV isolates was analysed by PCR-generated RFLPs. Six representative isolates having different RFLP patterns and causing either severe, moderate or mild disease symptoms, were chosen for amplification from FTA cards by bacteriophage phi29 DNA polymerase using the TempliPhi system. Full-length genomes were inserted into a cloning vector using a unique restriction enzyme site, and sequenced. The 1.3-kb PCR product amplified directly from FTA-eluted DNA and used for RFLP analysis was also cloned and sequenced. Comparison of cloned whole genome sequences with those of the original PCR products indicated that the correct virus genome had been cloned and that no errors were introduced by the phi29 polymerase. This is the first successful large-scale application of FTA card technology to the field, and illustrates the ease with which large numbers of infected samples can be collected and stored for downstream molecular applications such as diversity analysis and cloning of potentially new virus genomes.

  6. Molecular confirmation of Maize rayado fino virus as the Brazilian corn streak virus Confirmação molecular do 'Maize rayado fino virus' como vírus da estria do milho

    Directory of Open Access Journals (Sweden)

    Rosemarie Wahnbaeck Hammond

    2005-12-01

    Full Text Available Maize rayado fino virus (MRFV, present in various countries in Latin America, has shown similarities to corn streak virus that occurs in Brazil, regarding pathogenic, serological and histological characteristics. In the current report both virus were molecularly compared to confirm the similarities between them. MRFV was identified by nucleic acid hybridization in samples of maize tissues exhibiting symptoms of "corn stunt" disease, collected from two Brazilian States - São Paulo and Minas Gerais. The coat protein gene and 3'non-translated region of MRFV were amplified from infected tissues by reverse transcription-polymerase chain reaction (RT-PCR using MRFV-specific primers, and were characterized by nucleotide sequence and phylogenetic analysis of the cloned PCR products. Phylogenetic analysis of the relationships between the Brazilian isolates and isolates obtained from Latin America and the United States reveals a close relationship to isolates from Brazil, Peru and Bolivia. Results support the proposal that the Brazilian corn streak virus be regarded as an isolate of MRFV and provide evidence for the presence of MRFV in "corn stunt' disease in Brazil.O vírus do rayado fino do milho (MRFV, presente em vários países da América Latina, tem mostrado semelhança ao vírus da risca do milho que ocorre no Brasil, em relação a características patogênicas, sorológicas e histológicas. No presente trabalho, ambos os vírus foram comparados molecularmente, visando confirmar a similaridade entre os mesmos. O MRFV foi identificado por hibridização de ácido nucléico em amostras de tecido que apresentavam sintomas de enfezamento, coletadas nos estados de São Paulo e Minas Gerais. O gene da capa protéica e a região 3' não traduzida do MRFV foram amplificados, a partir de tecidos infectados, através da transcrição reversa por reação em cadeia da polimerase (RT-PCR, usando-se os iniciadores específicos para o vírus, obtendo-se a seq

  7. Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.

    Science.gov (United States)

    Tao, Tao; Zhou, Cui-Ji; Wang, Qian; Chen, Xiang-Ru; Sun, Qian; Zhao, Tian-Yu; Ye, Jian-Chun; Wang, Ying; Zhang, Zong-Ying; Zhang, Yong-Liang; Guo, Ze-Jian; Wang, Xian-Bing; Li, Da-Wei; Yu, Jia-Lin; Han, Cheng-Gui

    2017-01-01

    As a core subunit of the SCF complex that promotes protein degradation through the 26S proteasome, S-phase kinase-associated protein 1 (SKP1) plays important roles in multiple cellular processes in eukaryotes, including gibberellin (GA), jasmonate, ethylene, auxin and light responses. P7-2 encoded by Rice black streaked dwarf virus (RBSDV), a devastating viral pathogen that causes severe symptoms in infected plants, interacts with SKP1 from different plants. However, whether RBSDV P7-2 forms a SCF complex and targets host proteins is poorly understood. In this study, we conducted yeast two-hybrid assays to further explore the interactions between P7-2 and 25 type I Oryza sativa SKP1-like (OSK) proteins, and found that P7-2 interacted with eight OSK members with different binding affinity. Co-immunoprecipitation assay further confirmed the interaction of P7-2 with OSK1, OSK5 and OSK20. It was also shown that P7-2, together with OSK1 and O. sativa Cullin-1, was able to form the SCF complex. Moreover, yeast two-hybrid assays revealed that P7-2 interacted with gibberellin insensitive dwarf2 (GID2) from rice and maize plants, which is essential for regulating the GA signaling pathway. It was further demonstrated that the N-terminal region of P7-2 was necessary for the interaction with GID2. Overall, these results indicated that P7-2 functioned as a component of the SCF complex in rice, and interaction of P7-2 with GID2 implied possible roles of the GA signaling pathway during RBSDV infection.

  8. Rice black-streaked dwarf virus P6 self-interacts to form punctate, viroplasm-like structures in the cytoplasm and recruits viroplasm-associated protein P9-1

    Directory of Open Access Journals (Sweden)

    Yu Jialin

    2011-01-01

    Full Text Available Abstract Background Rice black-streaked dwarf virus (RBSDV, a member of the genus Fijivirus within the family Reoviridae, can infect several graminaceous plant species including rice, maize and wheat, and is transmitted by planthoppers. Although several RBSDV proteins have been studied in detail, functions of the nonstructural protein P6 are still largely unknown. Results In the current study, we employed yeast two-hybrid assays, bimolecular fluorescence complementation and subcellular localization experiments to show that P6 can self-interact to form punctate, cytoplasmic viroplasm-like structures (VLS when expressed alone in plant cells. The region from residues 395 to 659 is necessary for P6 self-interaction, whereas two polypeptides (residues 580-620 and 615-655 are involved in the subcellular localization of P6. Furthermore, P6 strongly interacts with the viroplasm-associated protein P9-1 and recruits P9-1 to localize in VLS. The P6 395-659 region is also important for the P6-P9-1 interaction, and deleting any region of P9-1 abolishes this heterologous interaction. Conclusions RBSDV P6 protein has an intrinsic ability to self-interact and forms VLS without other RBSDV proteins or RNAs. P6 recruits P9-1 to VLS by direct protein-protein interaction. This is the first report on the functionality of RBSDV P6 protein. P6 may be involved in the process of viroplasm nucleation and virus morphogenesis.

  9. Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.

    Directory of Open Access Journals (Sweden)

    Tao Tao

    Full Text Available As a core subunit of the SCF complex that promotes protein degradation through the 26S proteasome, S-phase kinase-associated protein 1 (SKP1 plays important roles in multiple cellular processes in eukaryotes, including gibberellin (GA, jasmonate, ethylene, auxin and light responses. P7-2 encoded by Rice black streaked dwarf virus (RBSDV, a devastating viral pathogen that causes severe symptoms in infected plants, interacts with SKP1 from different plants. However, whether RBSDV P7-2 forms a SCF complex and targets host proteins is poorly understood. In this study, we conducted yeast two-hybrid assays to further explore the interactions between P7-2 and 25 type I Oryza sativa SKP1-like (OSK proteins, and found that P7-2 interacted with eight OSK members with different binding affinity. Co-immunoprecipitation assay further confirmed the interaction of P7-2 with OSK1, OSK5 and OSK20. It was also shown that P7-2, together with OSK1 and O. sativa Cullin-1, was able to form the SCF complex. Moreover, yeast two-hybrid assays revealed that P7-2 interacted with gibberellin insensitive dwarf2 (GID2 from rice and maize plants, which is essential for regulating the GA signaling pathway. It was further demonstrated that the N-terminal region of P7-2 was necessary for the interaction with GID2. Overall, these results indicated that P7-2 functioned as a component of the SCF complex in rice, and interaction of P7-2 with GID2 implied possible roles of the GA signaling pathway during RBSDV infection.

  10. Picosecond x-ray streak camera studies

    International Nuclear Information System (INIS)

    Kasyanov, Yu.S.; Malyutin, A.A.; Richardson, M.C.; Chevokin, V.K.

    1975-01-01

    Some initial results of direct measurement of picosecond x-ray emission from laser-produced plasmas are presented. A PIM-UMI 93 image converter tube, incorporating an x-ray sensitive photocathode, linear deflection, and three stages of image amplification was used to analyse the x-ray radiation emanating from plasmas produced from solid Ti targets by single high-intensity picosecond laser pulses. From such plasmas, the x-ray emission typically persisted for times of 60psec. However, it is shown that this detection system should be capable of resolving x-ray phenomena of much shorter duration. (author)

  11. Hot Streak Characterization in Serpentine Exhaust Nozzles

    Science.gov (United States)

    2014-12-26

    intensity RSM Reynolds Stress Model SAE Society of Automotive Engineers SST shear stress transport UAV unmanned aerial vehicles UCAV unmanned combat...UAV) and unmanned combat aerial vehicles ( UCAV ). An inlet that could be considered slightly “two-turn” was investigated using an algebraic RSM with a... UCAV work of Brear, et al. [10]. This research included experimental and CFD results using the NASA CNS code and a K − ω turbulence model. The

  12. Electron accelerating unit for streak image tubes

    Indian Academy of Sciences (India)

    XIANG LI and JINGJIN ZHANG. Key Laboratory of Optoelectronic Devices and Systems of the Ministry of Education and Guangdong Province, College of Optoelectronic Engineering,. Shenzhen University, Shenzhen ... There are three advantages of the accelerating unit. In the pulsed mode, a pulsed voltage is applied to the ...

  13. Electron accelerating unit for streak image tubes

    Indian Academy of Sciences (India)

    Author Affiliations. Fangke Zong1 Qinlao Yang1 Houzhi Cai1 Li Gu1 Xiang Li1 Jingjin Zhang1. Key Laboratory of Optoelectronic Devices and Systems of the Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, China ...

  14. HEAVY ION FUSION SCIENCE VIRTUAL NATIONAL LABORATORY 2nd QUARTER 2010 MILESTONE REPORT. Develop the theory connecting pyrometer and streak camera spectrometer data to the material properties of beam heated targets and compare to the data

    International Nuclear Information System (INIS)

    More, R.M.; Barnard, J.J.; Bieniosek, F.M.; Henestroza, E.; Lidia, S.M.; Ni, P.A.

    2010-01-01

    This milestone has been accomplished. We have extended the theory that connects pyrometer and streak spectrometer data to material temperature on several fronts and have compared theory to NDCX-I experiments. For the case of NDCX-I, the data suggests that as the metallic foils are heated they break into droplets (cf. HIFS VNL Milestone Report FY 2009 Q4). Evaporation of the metallic surface will occur, but optical emission should be directly observable from the solid or liquid surface of the foil or from droplets. However, the emissivity of hot material may be changed from the cold material and interference effects will alter the spectrum emitted from small droplets. These effects have been incorporated into a theory of emission from droplets. We have measured emission using streaked spectrometry and together with theory of emission from heated droplets have inferred the temperature of a gold foil heated by the NDCX-I experiment. The intensity measured by the spectrometer is proportional to the emissivity times the blackbody intensity at the temperature of the foil or droplets. Traditionally, a functional form for the emissivity as a function of wavelength (such as a quadratic) is assumed and the three unknown emissivity parameters (for the case of a quadratic) and the temperature are obtained by minimizing the deviations from the fit. In the case of the NDCX-I experiment, two minima were obtained: at 7200 K and 2400 K. The best fit was at 7200 K. However, when the actual measured emissivity of gold was used and when the theoretical corrections for droplet interference effects were made for emission from droplets having radii in the range 0.2 to 2.0 microns, the corrected emissivity was consistent with the 2400 K value, whereas the fit emissivity at 7200 K shows no similarity to the corrected emissivity curves. Further, an estimate of the temperature obtained from beam heating is consistent with the lower value. This exercise proved to be a warning to be skeptical

  15. Pseudoxanthoma elasticum: case report with arterial stiffness evaluated by a research cardiovascular profiling system.

    Science.gov (United States)

    Sabán-Ruiz, Jose; Fabregate Fuente, Rosa; Sánchez-Largo Uceda, Elena; Fabregate Fuente, Martin

    2010-01-01

    Pseudoxanthoma elasticum (PXE) is an inherited systemic disorder characterized by calcification of elastic tissue, affecting the skin, the eyes and vascular system. The aim of our study was to specify the cardiovascular changes in a case of pseudoxanthoma elasticum by a non-invasive haemodynamic evaluation. We present a 50-year-old woman with a clinical diagnosis of pseudoxanthoma elasticum. Except for hypertension, treated over the past four years, there was no other modifiable cardiovascular risk factor. The patient had a familiar history of early cardiovascular death. In the physical examination, typical skin lesions were present and also an angioid streak of the retina. The patient and a control group were evaluated by the CR-2000 Research Cardiovascular Profiling System. A lower elasticity in large arteries (p = 0.006), a higher cardiac output (p = 0.006) and a higher total vascular impedance (p = 0.006) were observed with respect to the control group. There was no difference comparing this value with an elderly control group. We suggest that patients with PXE present vascular changes comparable with elderly patients and that these differences can not be explained by hypertension.

  16. Image-converter streak cameras with very high gain

    International Nuclear Information System (INIS)

    1975-01-01

    A new camera is described with slit scanning and very high photonic gain (G=5000). Development of the technology of tubes and microchannel plates has enabled integration of such an amplifying element in an image converter tube which does away with the couplings and the intermediary electron-photon-electron conversions of the classical converter systems having external amplification. It is thus possible to obtain equal or superior performance while retaining considerable gain for the camera, great compactness, great flexibility in use, and easy handling. (author)

  17. Avoiding acidic region streaking in two-dimensional gel ...

    Indian Academy of Sciences (India)

    Comparison of protein content in E. coli WCPE by SDS-PAGE. Lanes marked represent (1) TME extract; (2) 2DE extract by OP; (3) 2DE extract by SP; (4) 2DE ... Schematic representation of paper wick position and changing strategy. Supplementary figure 5. Schematic representation of IEF-program for 7 cm and 17 cm IPG ...

  18. Ductile streaks in precision grinding of hard and brittle materials

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    The important feature is that the grinding surface shape is axially symmetrical. It is now pos- sible to program the tool path of this tool on the CNC-machine such that it is in line (or arc) contact with the work piece as it cuts the desired shape on the glass. To illustrate this, the grinding of a paraboloid is shown. The cup tool can ...

  19. Ductile streaks in precision grinding of hard and brittle materials

    Indian Academy of Sciences (India)

    Author Affiliations. V C Venkatesh1 S Izman1 S Sharif1 T T Mon1 M Konneh1. Department of Manufacturing & Industrial Engineering, Faculty of Mechanical Engineering, Universiti Teknologi Malaysia, UTM Skudai, Malaysia ...

  20. Progression of Cassava Brown Streak Disease (CBSD) in infected ...

    African Journals Online (AJOL)

    The experiment was conducted at Namulonge (central Uganda), where the CBSD pressure and whitefly population is high. Four CBSD susceptible genotypes (TME204, TMSI92/0067, MH97/2961, and Bamunanika) and five CBSD tolerant genotypes (TME14, NASE 3, NASE 1, MM96/0686 and 28- TME 14) were used.

  1. X-ray streak and framing camera techniques

    International Nuclear Information System (INIS)

    Coleman, L.W.; Attwood, D.T.

    1975-01-01

    This paper reviews recent developments and applications of ultrafast diagnostic techniques for x-ray measurements. These techniques, based on applications of image converter devices, are already capable of significantly important resolution capabilities. Techniques capable of time resolution in the sub-nanosecond regime are being considered. Mechanical cameras are excluded from considerations as are devices using phosphors or fluors as x-ray converters

  2. Metal artifact reduction method using metal streaks image subtraction

    International Nuclear Information System (INIS)

    Pua, Rizza D.; Cho, Seung Ryong

    2014-01-01

    Many studies have been dedicated for metal artifact reduction (MAR); however, the methods are successful to varying degrees depending on situations. Sinogram in-painting, filtering, iterative method are some of the major categories of MAR. Each has its own merits and weaknesses. A combination of these methods or hybrid methods have also been developed to make use of the different benefits of two techniques and minimize the unfavorable results. Our method focuses on the in-paitning approach and a hybrid MAR described by Xia et al. Although in-painting scheme is an effective technique in reducing the primary metal artifacts, a major drawback is the reintroduction of new artifacts that can be caused by an inaccurate interpolation process. Furthermore, combining the segmented metal image to the corrected nonmetal image in the final step of a conventional inpainting approach causes an issue of incorrect metal pixel values. Our proposed method begins with a sinogram in-painting approach and ends with an image-based metal artifact reduction scheme. This work provides a simple, yet effective solution for reducing metal artifacts and acquiring the original metal pixel information. The proposed method demonstrated its effectiveness in a simulation setting. The proposed method showed image quality that is comparable to the standard MAR; however, quantitatively more accurate than the standard MAR

  3. Avoiding acidic region streaking in two-dimensional gel ...

    Indian Academy of Sciences (India)

    pure water rather than in viscous rehydration buffer. After cell lysis urea, thiourea, CHAPS, DTT and ampholyte are added. Page 2. Supplementary figure 2. Comparison of protein content in E. coli WCPE by SDS-PAGE. Lanes marked represent (1) TME extract; (2) 2DE extract by OP; (3) 2DE extract by SP; (4) 2DE extract by ...

  4. Significance and transmission of maize streak virus disease in Africa ...

    African Journals Online (AJOL)

    STORAGESEVER

    2008-12-29

    Dec 29, 2008 ... kDa is the sole viral protein essential for replication of. dsDNA in cell protoplast and are ... Proportion of MSV transmitters in populations of C. mbila was reported to vary between 60 and 100% (Markham .... relationships in the solitary bee Megachile rotundata used. DNA markers such as DNA fingerprinting ...

  5. Avoiding acidic region streaking in two-dimensional gel ...

    Indian Academy of Sciences (India)

    Author Affiliations. Arnab Roy1 Umesh Varshney2 Debnath Pal1. Bioinformatics Centre, Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India; Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560 012, India ...

  6. Follow the line: Mysterious bright streaks on Dione and Rhea

    Science.gov (United States)

    Martin, E. S.; Patthoff, D. A.

    2017-12-01

    Our recent mapping of the wispy terrains of Saturn's moons Dione and Rhea has revealed unique linear features that are generally long (10s-100s km), narrow (1-10 km), brighter than the surrounding terrains, and their detection may be sensitive to lighting geometries. We refer to these features as `linear virgae.' Wherever linear virgae are observed, they appear to crosscut all other structures, suggesting that they are the youngest features on these satellites. Despite their young age and wide distribution, linear virgae on Rhea and Dione have largely been overlooked in the literature. Linear virgae on Dione have previously been identified in Voyager and Cassini Data, but their formation remains an open question. If linear virgae are found to be endogenic, it would suggest that the surfaces of Dione and Rhea have been active recently. Alternatively, if linear virgae are exogenic it would suggest that the surfaces have been modified by a possibly common mechanism. Further work would be necessary to determine both a source of material and the dynamical environment that could produce these features. Here we present detailed morphometric measurements to further constrain whether linear virgae on Rhea and Dione share common origins. We complete an in-depth assessment of the lighting geometries where these features are visible. If linear virgae in the Saturnian system show common morphologies and distributions, a new, recently active, possibly system-wide mechanism may be revealed, thereby improving our understanding of the recent dynamical environment around Saturn.

  7. Avoiding acidic region streaking in two-dimensional gel ...

    Indian Academy of Sciences (India)

    2014-07-21

    Jul 21, 2014 ... used, as an alternative for costly 2DE-quantification kits. Our designed protocols are ..... 7 IPG 17 cm strips: (i) made by OP then DNase/RNase treated and (ii) made by OP with optimized IEF. (D) 2DE image of (i) E. coli ..... Proteomic analysis of human saliva from lung cancer patients using two-dimensional ...

  8. Optimisation of in vitro techniques for cassava brown streak virus ...

    African Journals Online (AJOL)

    The optimum medium was used for in vitro thermotherapy using four temperature regimes, namely 30-34, 34-38, 36-40 and 38-42 oC for 8 hours darkness and 16 hours light, respectively, for four weeks. The best plantlet growth in terms of height was observed on MS medium supplemented with 0.5 mg l-1 BAP and 0.1 mg ...

  9. Detection of banana streak virus (BSV) Tamil Nadu isolate (India ...

    African Journals Online (AJOL)

    Yomi

    2012-10-09

    641 003, Tamil Nadu, India. 2Department of Fruit Crops, ... Hence, attempts were made for diagnosis of BSV and to study the serological relationship with ... Among the five virus diseases of banana, disease caused by banana ...

  10. Avoiding acidic region streaking in two-dimensional gel ...

    Indian Academy of Sciences (India)

    2014-07-21

    Jul 21, 2014 ... our procedure using whole cell protein extracts from two diverse organisms, Escherichia coli and Mycobacterium smegmatis. Our designed ... are prone to errors due to attenuated nuclease activity in strong denaturing buffer ... cycles becomes essential in order to get any meaningful profile from 2DE gels ...

  11. Ductile streaks in precision grinding of hard and brittle materials

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    During the subsequent steps of polishing, the use of a flexible tool allows conformity between the work piece and the tool, approaching the original condition of a contact area. Two cup-shaped identical size diamond-grinding wheels with metallic (D20/30 MIC-. L50M-1/4) and resinoid (SD240-R1OO B69-6 mm) bonding ...

  12. Feijoeiro manteiga, planta-teste para os vírus de vira-cabeça e da necrose branca do fumo A bean variety useful as a local-lesion test plant for tomato spotted wilt and Brazilian tobacco streak viruses

    Directory of Open Access Journals (Sweden)

    A. S. Costa

    1957-01-01

    mistura de búfer e sulfito de sódio deu o maior aumento.Out of 200 bean varieties tested, plants of the var. Manteiga were the most sensitive to tomato spotted wilt (TSW and Brazilian tobacco streak (BTS viruses. The inoculated plants developed local chlorotic spots adequate for counts within 3-6 days after inoculation with the TSW virus; pin point or rings in 2-4 days following inoculation with the BTS virus. Bean plants with the primary leaves 2/3 expanded or slightly older gave better results for the TSW virus, whereas they were more sensitive to BTS virus when 2/3 expanded or slightly younger. The TSW virus did not become systemic in the bean plants. Most strains of the BTS virus also did not become systemic in the inoculated plants. A yellow strain of this virus usually did. Sodium sulfite at 0.01 M added to the infected tissues during extraction of the inoculum increased the number of lesions formed in the bean leaves inoculated with the TSW virus; the increase was greater when extraction was made in presence of phosphate buffer at pH 7 and at the concentration of 0.1 M. A mixture of buffer and sulfite did not cause a greater increase than buffer alone. Por the BTS virus the addition of sodium sulfite at 0.01 M during extraction gave a large increase in the number of lesions; buffer alone caused only a small increase, but a mixture of buffer and sodium sulfite gave the highest increase. Phosphate buffer at 0.05 M and with pH 7 or 8, added prior to extraction, gave a higher number of lesions in case of both viruses than the same concentration of buffer at pH 5 or 6. The use of butter at concentrations ranging from 0.1 to 0.0125 M were tried and did not cause great differences in the number of local lesions, but the best ones seemed to be 0.05 or 0.025 M. Four concentrations of sodium sulfite, 0.1, 0.05, 0.025, and 0.0125 M were compared as diluents for the same inocula in presence of phosphate buffer. The two lowest ones gave the highest number of lesions for both

  13. Radiation therapy for ocular choroidal neovascularization (phase I/II study): preliminary report

    International Nuclear Information System (INIS)

    Sasai, Keisuke; Murata, Rumi; Mandai, Michiko; Takahashi, Masayo; Ogura, Yuichiro; Ngata, Yasushi; Nishimura, Yasumasa; Hiraoka, Masahiro

    1997-01-01

    Purpose/Objective: Choroidal neovascularization (CNV) is a major cause of severe loss of visual acuity in some ocular diseases such as age-related macular degeneration (ARMD) and angioid streaks. Laser photocoagulation has been used to treat patients with subfoveal neovascular lesions with well-demarcated boundaries. However, the treatment method is usually associated with a large decrease in visual acuity. Therefore, indications for this treatment are very limited. Recently, some investigators reported the effect of low dose irradiation on the sub retinal neovascular membranes in CNV. We conducted a Phase I/II study to determine the toxicity and efficacy of external photon beam radiotherapy in patients with CNV. Methods and Materials: Between April, 1994 and July, 1995, 36 patients with choroidal neovascularization (34 with ARMD and 2 with angioid streaks) were treated with radiation therapy. Treatment planning was performed using a CT simulator that enables real-time treatment planning from multiple CT slices. The clinical target volume that included the macula and optic disc received a dose of 10 Gy/5 fractions/1 week (first 18 eyes) or 20 Gy/10 fractions/2 weeks (last 18 eyes). All eyes were irradiated with a single lateral 6 MV photon beam, angled 10 degrees posteriorly to exclude the ipsilateral lens and the contralateral eye from the radiation field. The ipsilateral lens was irradiated with less than 10% of the total reference dose. The field size averaged 3.0 x 2.5 cm. Records of the 17 eyes with CNV referred to our hospital in 1993, which satisfied the eligibility criteria for this study, were retrospectively analyzed for comparison. Results: There was no significant acute morbidity. All patients were followed regularly by both ophthalmologists and radiation oncologists. Cataract formation after 1 year of the treatment was observed in one patient who had received a dose of 20 Gy. One patient who had received 20 Gy complained of transient dry-eye sensation

  14. PDT: special cases in front of legal regulations

    Science.gov (United States)

    Fischer, E.; Wegner, A.; Pfeiler, T.; Mertz, M.

    2002-10-01

    Introduction: The classic indication for photodynamic therapy (PDT) in ophthalmology is currently represented by classic subfoveal choroidal neovascularisation (CNV) due to age-related macular degeneration (AMD). PDT is a method, which almost selectively causes endothelial damage in neovascular lesions, followed by vascular occlusion and involution of the CNV. The mechanistic aspect suggests that non AMD-related choroidal neovascularisations might also benefit from PDT. PDT in AMD: Within the German health system, PDT indications follow the criteria based on the inclusion criteria of the TAP studies. For instance the CNV should be predominantly classic and located under the center of the foveal avascular zone. In the diagnosis and follow-up of exudative AMD, visual acuity measurements and fluorescein angiography are the established parameters. Retinal thickness analyzer (RTA) measurements might give further information. Before PDT, they show a significant retinal thickening due to intra- and subretinal exudation. Following PDT, early RTA follow-ups show a clear decrease in retinal thickening accompanies by increasing or stable acuity. PDT in CNV of other origins than AMD: New studies support a new spectrum of indications for PDT, hopefully leading to general cost reimbursement for patients. PDT should be viewed as a general method for vascular occlusion and does not represent a causal therapy for progressive exudative AMD. We present patients with CNV due to pathologic myopia, angioid streaks and POHS. Conclusion: The selective vascular occlusion caused by PDT, besides CNV associated with AMD and pathologic myopia, may also allow the treatment of choroidal neovascularisations based on other entities. Careful individual evaluation of those cases is recommended. Despite this wide array of possible indications, cost reimbursement has been limited to classic subfoveal CNV in AMD, although single case reimbursements in choroidal neovascular lesions due to pathologic

  15. [Mendelian arterial diseases. Pseudoxanthoma elasticum, Ehlers-Danlos vascular syndrome, Rendu-Osler disease].

    Science.gov (United States)

    Perdu, J

    2003-11-01

    Understanding the features of the various hereditary vascular pathologies allows consideration and confirmation of the diagnosis, and a search for treatable hidden disorders, avoiding harmful investigations, initiating follow up, performing family investigations and providing genetic counselling. Pseudoxanthoma elasticum must be considered in the presence of calcified distal arteriopathy of the lower limbs in a young subject without any other aetiological aspects. Cutaneous or mucosal lesions confirmed on histological examination, angioid streaks at the back of the eye and a family history support the diagnosis, which is confirmed by showing pathogenic mutations of the ABCC6 gene. It is then important to search for a peripheral disorder in other arterial territory, a low grade coronaropathy, hypertension and an endocardial disorder. Prescription of antithrombotics must be made carefully because of the risk of gastro-intestinal haemorrhage. Vascular Ehlers-Danlos syndrome is suspected in a subject less than 30 years old with diffuse aneurysmal disease, spontaneous arterial rupture or dissection, a carotido-cavernous fistula or early onset varices. Demonstrating an ecchymotic tendency or an acrogeric morphology, especially in a familial context, warrants cutaneous biopsy for anatomopathological examination and fibroblast culture for a study of the C0L3A1 gene. When the diagnosis is suggested, it is advisable to prohibit any arterial puncture, cold surgery or gastro-intestinal endoscopy. The search for aneurysmal lesions must be performed by non-invasive imaging. The therapeutic management requires specialised teams. The combination of repeated epistaxis, muco-cutaneous telangectasia and similar characteristics in a family suggests the diagnosis of Osler-Weber-Rendu disease. The search for iron deficiency, gastro-intestinal bleeds and pulmonary, hepatic or cerebral arterio-venous malformations is then necessary. Besides skilled endovascular management when indicated

  16. High speed streak techniques for measuring the growth of spark channels

    International Nuclear Information System (INIS)

    Suleebka, P.

    1975-01-01

    The manner of expansion of an electric spark channel is of interest in the understanding of such phenomena as lightning. The development of a camera suitable for photography of this expansion is described, with some results for hydrogen. (author)

  17. Traffic jam in the primitive streak: the role of defective mesoderm migration in birth defects.

    Science.gov (United States)

    Herion, Nils J; Salbaum, J Michael; Kappen, Claudia

    2014-08-01

    Gastrulation is the process in which the three germ layers are formed that contribute to the formation of all major tissues in the developing embryo. We here review mouse genetic models in which defective gastrulation leads to mesoderm insufficiencies in the embryo. Depending on severity of the abnormalities, the outcomes range from incompatible with embryonic survival to structural birth defects, such as heart defects, spina bifida, or caudal dysgenesis. The combined evidence from the mutant models supports the notion that these congenital anomalies can originate from perturbations of mesoderm specification, epithelial-mesenchymal transition, and mesodermal cell migration. Knowledge about the molecular pathways involved may help to improve strategies for the prevention of major structural birth defects. © 2014 Wiley Periodicals, Inc.

  18. Diversity of banana streak-inducing viruses in Nigeria and Ghana ...

    African Journals Online (AJOL)

    GRACE

    2006-06-16

    Jun 16, 2006 ... decorated BSV-like particles or bacilliform particles which did not at all react with the antibodies available. This proved, the ... disease which occurs worldwide in banana and plantains. (Musa spp.) and which is .... overnight at 20°C. After rinsing with 40 drops of distilled water, each grid was negatively ...

  19. Classification of reticular pattern and streaks in dermoscopic images based on texture analysis.

    Science.gov (United States)

    Machado, Marlene; Pereira, Jorge; Fonseca-Pinto, Rui

    2015-10-01

    The early detection of melanoma is one of the greatest challenges in clinical practice of dermatology, and the reticular pattern is one of the most important dermoscopic structures to improve melanocytic lesion diagnosis. A texture-based approach is developed for the automatic detection of reticular patterns, whose output will assist clinical decision-making. Feature selection was based on the use of two algorithms by means of the classical graylevel co-occurrence matrix and Laws energy masks optimized on a set of 104 dermoscopy images. The AdaBoost (adaptive boosting) approach to machine learning was used within this strategy. Results suggest superiority of LEM for reticular pattern detection in dermoscopic images, achieving a sensitivity of 90.16% and a specificity of 86.67%. The use of automatic classification in dermoscopy to support clinicians is a strong tool to assist diagnosis; however, the use of automatic classification as a complementary tool in clinical routine requires algorithms with high levels of sensitivity and specificity. The results presented in this work will contribute to achieving this goal.

  20. Hausdorff Distance evaluation of orthodontic accessories' streaking artifacts in 3D model superimposition

    Directory of Open Access Journals (Sweden)

    José Rino Neto

    2012-10-01

    Full Text Available The aim of this study was to determine whether image artifacts caused by orthodontic metal accessories interfere with the accuracy of 3D CBCT model superimposition. A human dry skull was subjected three times to a CBCT scan: at first without orthodontic brackets (T1, then with stainless steel brackets bonded without (T2 and with orthodontic arch wires (T3 inserted into the brackets' slots. The registration of image surfaces and the superimposition of 3D models were performed. Within-subject surface distances between T1-T2, T1-T3 and T2-T3 were computed and calculated for comparison among the three data sets. The minimum and maximum Hausdorff Distance units (HDu computed between the corresponding data points of the T1 and T2 CBCT 3D surface images were 0.000000 and 0.049280 HDu, respectively, and the mean distance was 0.002497 HDu. The minimum and maximum Hausdorff Distances between T1 and T3 were 0.000000 and 0.047440 HDu, respectively, with a mean distance of 0.002585 HDu. In the comparison between T2 and T3, the minimum, maximum and mean Hausdorff Distances were 0.000000, 0.025616 and 0.000347 HDu, respectively. In the current study, the image artifacts caused by metal orthodontic accessories did not compromise the accuracy of the 3D model superimposition. Color-coded maps of overlaid structures complemented the computed Hausdorff Distances and demonstrated a precise fusion between the data sets.

  1. Absolute calibration method for nanosecond-resolved, time-streaked, fiber optic light collection, spectroscopy systems

    International Nuclear Information System (INIS)

    Johnston, Mark D.; Oliver, Bryan V.; Droemer, Darryl W.; Frogget, Brent; Crain, Marlon D.; Maron, Yitzhak

    2012-01-01

    This paper describes a convenient and accurate method to calibrate fast ( 2 /steradian/nm). Error analysis shows this method to be accurate to within +/– 20%, which represents a high level of accuracy for this type of measurement.

  2. Quantitative trait loci for resistance to maize streak virus disease in ...

    African Journals Online (AJOL)

    STORAGESEVER

    2008-07-18

    Jul 18, 2008 ... method of controlling the disease is through resistance breeding, since with resistant genotypes, ... Microsatellite markers occur in many plants including maize (Senior and Heun, 1993), soybean ... DNA precipitated out of solution to form white cotton like threads. These were hooked out into1.5 ml micro ...

  3. Physico-chemical characterization of banana varieties resistant to black leaf streak disease for industrial purposes

    Directory of Open Access Journals (Sweden)

    Rossana Catie Bueno de Godoy

    2016-01-01

    Full Text Available ABSTRACT: Cultivated bananas have very low genetic diversity making them vulnerable to diseases such as black-Sigatoka leaf spot. However, the decision to adopt a new banana variety needs to be based on a robust evaluation of agronomical and physical-chemical characteristics. Here, we characterize new banana varieties resistant to black-Sigatoka leaf spot and compare them to the most widely used traditional variety (Grand Naine. Each variety was evaluated for a range of physic-chemical attributes associated with industrial processing and flavor: pH, TTA, TSS/TTA, total sugars, reducing sugars and non-reducing sugars, humidity, total solids and yield. The Thap Maeo variety had the highest potential as a substitute for the Grand Naine variety, having higher levels of total soluble solids, reducing sugars, total sugars and humidity. The Caipira and FHIA 2 varieties also performed well in comparison with the Grand Naine variety. Cluster analysis indicated that the Grand Naine variety was closely associated with varieties from the Gross Michel subgroup (Bucaneiro, Ambrosia and Calipso and the Caipira variety, all of which come from the same AAA genomic group. It was concluded that several of the new resistant varieties could potentially substitute the traditional variety in areas affected by black-Sigatoka leaf spot disease.

  4. ISOCHROMOSOME-18Q IN A GIRL WITH HOLOPROSENCEPHALY, DIGEORGE ANOMALY, AND STREAK OVARIES

    NARCIS (Netherlands)

    VANESSEN, AJ; SCHOOTS, CJF; VANLINGEN, RA; MOURITS, MJE; TUERLINGS, JHAM; LEEGTE, B

    1993-01-01

    We report on the clinical and pathologic findings in a girl with isochromosome 18q (46, XX,i(18q)) who had combined manifestations of monosomy 18p and trisomy 18q. Major congenital anomalies included premaxillary agenesis, alobar holoprosenphaly, double outlet right ventricle, DiGeorge anomaly and

  5. Stable isotope analysis suggests the existence of multiple populations of streaked spinefoot (Siganus javus L. in Bandon Bay, Southern Thailand

    Directory of Open Access Journals (Sweden)

    Yuki Okamoto

    2016-05-01

    Full Text Available Abstract The stock unit used in fisheries resource assessment and management is generally based on the morphological and genetic characteristics of a particular population or species to avert problems caused by the treatment of multiple populations as one stock, which can lead to the overestimation of population sizes and genetic pollution. Furthermore, since the linkage of microhabitats is an important factor affecting the reproduction of marine organisms in coastal areas, an understanding of the food web in each microhabitat is essential to establish sustainable fisheries management practices. We investigated spatial variations in the food sources and feeding habits of immature stage of Siganus javus using genetic population analyses and stable isotope analyses (δ13C and δ15N. These species are commonly harvested by small-scale fisheries, and it inhabits Bandon Bay in the Surat Thani Province of Southern Thailand. Genetic variation within sampling sites was greater than that between sites. The δ13C values of S. javus differed between sites, which suggest that the different ecological habitats exhibit different rates and patterns of carbon flow even among sites located in the same bay. Our results suggest that studies combining genetic population analyses and stable isotope analyses are required to confirm the delineation of fine-scale management units intended for the development of coastal fishery resources.

  6. Streaks to rings to vortex grids: generic patterns in transient convective spin up of an evaporating fluid.

    Science.gov (United States)

    Zhong, J-Q; Patterson, M D; Wettlaufer, J S

    2010-07-23

    We observe the transient formation of a ringed pattern state during spin up of an evaporating fluid on a time scale of order a few Ekman spin up times. The ringed state is probed using infrared thermometry and particle image velocimetry and it is demonstrated to be a consequence of the transient balance between Coriolis and viscous forces which dominate inertia, each of which are extracted from the measured velocity field. The breakdown of the ringed state is quantified in terms of the antiphasing of these force components which drives a Kelvin-Helmholtz instability and we show that the resulting vortex grid spacing scales with the ring wavelength. This is the fundamental route to quasi-two-dimensional turbulent vortex flow and thus may have implications in astrophysics and geophysics wherein rotating convection is ubiquitous.

  7. Violent cookoff reactions in HMX-based explosives in DDT tubes: Tracking luminous waves with streak imaging

    Science.gov (United States)

    Parker, Gary; Dickson, Peter; Asay, Blaine W.; Smilowitz, Laura; Henson, Bryan; McAfee, John

    2012-03-01

    Recent implementation of modern high-speed video cameras has permitted the experimental flexibility needed to revisit classic deflagration-to-detonation (DDT) tube experiments and capture novel and valuable results displaying the progression of luminous reaction from a cookoff event. The authors present select data from a series of experiments where the HMX-based high explosives PBX 9501 and LX-07 were heated above 180°C for various durations to impose damage (i.e. phase transitions and void generation) before being driven to cook off. These two explosives have different polymeric binders, HMX mass fractions and cook off responses and a comparison between the two offers mechanistic insights on how thermal explosions evolve. From this series, results will be displayed indicating a wide range of violence from somewhat mild pressure bursts, to intermediate power compressive burns, to high-violence DDT. Image data from high temperature DDT tube experiments, where the explosive was ignited on one end, were also collected and will be included for comparison.

  8. Total Variation-Based Reduction of Streak Artifacts, Ring Artifacts and Noise in 3D Reconstruction from Optical Projection Tomography

    Czech Academy of Sciences Publication Activity Database

    Michálek, Jan

    2015-01-01

    Roč. 21, č. 6 (2015), s. 1602-1615 ISSN 1431-9276 R&D Projects: GA MŠk(CZ) LH13028; GA ČR(CZ) GA13-12412S Institutional support: RVO:67985823 Keywords : optical projection tomography * microscopy * artifacts * total variation * data mismatch Subject RIV: EA - Cell Biology Impact factor: 1.730, year: 2015

  9. Evasion of short interfering RNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses.

    Science.gov (United States)

    Rajeswaran, Rajendran; Seguin, Jonathan; Chabannes, Matthieu; Duroy, Pierre-Olivier; Laboureau, Nathalie; Farinelli, Laurent; Iskra-Caruana, Marie-Line; Pooggin, Mikhail M

    2014-10-01

    Vegetatively propagated crop plants often suffer from infections with persistent RNA and DNA viruses. Such viruses appear to evade the plant defenses that normally restrict viral replication and spread. The major antiviral defense mechanism is based on RNA silencing generating viral short interfering RNAs (siRNAs) that can potentially repress viral genes posttranscriptionally through RNA cleavage and transcriptionally through DNA cytosine methylation. Here we examined the RNA silencing machinery of banana plants persistently infected with six pararetroviruses after many years of vegetative propagation. Using deep sequencing, we reconstructed consensus master genomes of the viruses and characterized virus-derived and endogenous small RNAs. Consistent with the presence of endogenous siRNAs that can potentially establish and maintain DNA methylation, the banana genomic DNA was extensively methylated in both healthy and virus-infected plants. A novel class of abundant 20-nucleotide (nt) endogenous small RNAs with 5'-terminal guanosine was identified. In all virus-infected plants, 21- to 24-nt viral siRNAs accumulated at relatively high levels (up to 22% of the total small RNA population) and covered the entire circular viral DNA genomes in both orientations. The hotspots of 21-nt and 22-nt siRNAs occurred within open reading frame (ORF) I and II and the 5' portion of ORF III, while 24-nt siRNAs were more evenly distributed along the viral genome. Despite the presence of abundant viral siRNAs of different size classes, the viral DNA was largely free of cytosine methylation. Thus, the virus is able to evade siRNA-directed DNA methylation and thereby avoid transcriptional silencing. This evasion of silencing likely contributes to the persistence of pararetroviruses in banana plants. We report that DNA pararetroviruses in Musa acuminata banana plants are able to evade DNA cytosine methylation and transcriptional gene silencing, despite being targeted by the host silencing machinery generating abundant 21- to 24-nucleotide short interfering RNAs. At the same time, the banana genomic DNA is extensively methylated in both healthy and virus-infected plants. Our findings shed light on the siRNA-generating gene silencing machinery of banana and provide a possible explanation why episomal pararetroviruses can persist in plants whereas true retroviruses with an obligatory genome-integration step in their replication cycle do not exist in plants. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  10. ‘My independent streak may get in the way’: how older adults respond to falls prevention education in hospital

    Science.gov (United States)

    Hill, Anne-Marie; Francis-Coad, Jacqueline; Haines, Terry P; Waldron, Nicholas; Etherton-Beer, Christopher; Flicker, Leon; Ingram, Katharine; McPhail, Steven M

    2016-01-01

    Objectives The aim of the study was to determine how providing individualised falls prevention education facilitated behaviour change from the perspective of older hospital patients on rehabilitation wards and what barriers they identified to engaging in preventive strategies. Design A prospective qualitative survey. Methods Older patients (n=757) who were eligible (mini-mental state examination score>23/30) received falls prevention education while admitted to eight rehabilitation hospital wards in Western Australia. Subsequently, 610 participants were surveyed using a semistructured questionnaire to gain their response to the in-hospital education and their identified barriers to engaging in falls prevention strategies. Deductive content analysis was used to map responses against conceptual frameworks of health behaviour change and risk taking. Results Participants who responded (n=473) stated that the education raised their awareness, knowledge and confidence to actively engage in falls prevention strategies, such as asking for assistance prior to mobilising. Participants’ thoughts and feelings about their recovery were the main barriers they identified to engaging in safe strategies, including feeling overconfident or desiring to be independent and thinking that staff would be delayed in providing assistance. The most common task identified as potentially leading to risk-taking behaviour was needing to use the toilet. Conclusions Individualised education assists older hospital rehabilitation patients with good levels of cognition to engage in suitable falls prevention strategies while on the ward. Staff should engage with patients to understand their perceptions about their recovery and support patients to take an active role in planning their rehabilitation. PMID:27466244

  11. Development and characterization of the first infectious clone of alfalfa latent virus, a strain of Pea streak virus

    Science.gov (United States)

    Alfalfa (Medicago sativa) is a natural host plant for many plant pathogens including fungi, bacteria, nematodes and viruses. Alfalfa latent virus (ALV) is a member of the carlavirus group and occurs symptomlessly in alfalfa. The first complete genomic sequence of the ALV that was recently obtained i...

  12. Not all streaks are the same: Individual differences in risk preferences during runs of gains and losses

    Directory of Open Access Journals (Sweden)

    Christopher T. Ball

    2012-07-01

    Full Text Available Runs of gains and losses are particularly salient to decision makers because of their perceived departure from randomness, as well as their immediate impact on the financial status of the decision makers. Past research has focused on decision making biases that relate to faulty conceptions of chance and luck, such as the gambler's fallacy and the hot hand effect. Participants in the current study bet on the outcomes of a long sequence of simulated coin tosses. Risk preferences were found to change as a function of run valence (i.e., losses vs. gains, run length, and financial status. Individuals were found to differ in the effect of all of these factors, in their responses to runs of gains and losses in sequential risky choice.

  13. Proteome profile of maize (Zea Mays L.) leaf tissue at the flowering stage after long-term adjustment to rice black-streaked dwarf virus infection.

    Science.gov (United States)

    Li, Kunpeng; Xu, Changzheng; Zhang, Juren

    2011-10-10

    Maize rough dwarf disease (MRDD) is a viral disease and causes great yield loss. To better understand the effects of MRDD on plant growth and metabolism, comparative proteomic analysis of leaves from virus-infected and normal plants was performed. In order to eliminate the interference of Ribulose-1, 5-bisphosphate carboxylase with low-abundance proteins, total proteins were pre-fractionated by 15% PEG and the proteins from supernatant and precipitated fractions were analyzed by 2-DE, subsequently. Out of approximately 1200 protein spots detected, less than 2% of the spots on the gels were overlapping between the fractions of precipitation and supernatant. We identified 91 differentially accumulated proteins that belong to multiple metabolic/biochemical pathways in plants. Further analysis of these identified proteins indicated that MRDD resulted in dramatic changes in the fundamental metabolism, including glycolysis and starch metabolism, and eventually the significant differences in morphology and development between virus-infected and normal plants. Moreover, MRDD occurrence increased the demands for G-proteins, antioxidant enzymes, lipoxygenases and UDP-glucosyltransferase BX9, which may play important roles in response of plant against virus infection. The results also suggested that MRDD is a complicated disease controlled by multigene participating in different pathways. Copyright © 2011 Elsevier B.V. All rights reserved.

  14. Measurements of the principal Hugoniots of dense gaseous deuterium−helium mixtures: Combined multi-channel optical pyrometry, velocity interferometry, and streak optical pyrometry measurements

    Directory of Open Access Journals (Sweden)

    Zhi-Guo Li

    2016-10-01

    Full Text Available The accurate hydrodynamic description of an event or system that addresses the equations of state, phase transitions, dissociations, ionizations, and compressions, determines how materials respond to a wide range of physical environments. To understand dense matter behavior in extreme conditions requires the continual development of diagnostic methods for accurate measurements of the physical parameters. Here, we present a comprehensive diagnostic technique that comprises optical pyrometry, velocity interferometry, and time-resolved spectroscopy. This technique was applied to shock compression experiments of dense gaseous deuterium–helium mixtures driven via a two-stage light gas gun. The advantage of this approach lies in providing measurements of multiple physical parameters in a single experiment, such as light radiation histories, particle velocity profiles, and time-resolved spectra, which enables simultaneous measurements of shock velocity, particle velocity, pressure, density, and temperature and expands understanding of dense high pressure shock situations. The combination of multiple diagnostics also allows different experimental observables to be measured and cross-checked. Additionally, it implements an accurate measurement of the principal Hugoniots of deuterium−helium mixtures, which provides a benchmark for the impedance matching measurement technique.

  15. Positive selection and intragenic recombination contribute to high allelic diversity in effector genes of Mycosphaerella fijiensis, causal agent of the black leaf streak disease of banana

    NARCIS (Netherlands)

    Stergiopoulos, I.; Cordovez da Cunha, V.; Okmen, B.; Beenen, H.G.; Kema, G.H.J.; Wit, de P.J.G.M.

    2014-01-01

    Previously, we have determined the nonhost-mediated recognition of the MfAvr4 and MfEcp2 effector proteins from the banana pathogen Mycosphaerella fijiensis in tomato, by the cognate Cf-4 and Cf-Ecp2 resistance proteins, respectively. These two resistance proteins could thus mediate resistance

  16. Positive selection and intragenic recombination contribute to high allelic diversity in effector genes of Mycosphaerella fijiensis, causal agent of the black leaf streak disease of banana.

    Science.gov (United States)

    Stergiopoulos, Ioannis; Cordovez, Viviane; Okmen, Bilal; Beenen, Henriek G; Kema, Gert H J; de Wit, Pierre J G M

    2014-06-01

    Previously, we have determined the nonhost-mediated recognition of the MfAvr4 and MfEcp2 effector proteins from the banana pathogen Mycosphaerella fijiensis in tomato, by the cognate Cf-4 and Cf-Ecp2 resistance proteins, respectively. These two resistance proteins could thus mediate resistance against M. fijiensis if genetically transformed into banana (Musa spp.). However, disease resistance controlled by single dominant genes can be overcome by mutated effector alleles, whose products are not recognized by the cognate resistance proteins. Here, we surveyed the allelic variation within the MfAvr4, MfEcp2, MfEcp2-2 and MfEcp2-3 effector genes of M. fijiensis in a global population of the pathogen, and assayed its impact on recognition by the tomato Cf-4 and Cf-Ecp2 resistance proteins, respectively. We identified a large number of polymorphisms that could reflect a co-evolutionary arms race between host and pathogen. The analysis of nucleotide substitution patterns suggests that both positive selection and intragenic recombination have shaped the evolution of M. fijiensis effectors. Clear differences in allelic diversity were observed between strains originating from South-East Asia relative to strains from other banana-producing continents, consistent with the hypothesis that M. fijiensis originated in the Asian-Pacific region. Furthermore, transient co-expression of the MfAvr4 effector alleles and the tomato Cf-4 resistance gene, as well as of MfEcp2, MfEcp2-2 and MfEcp2-3 and the putative Cf-Ecp2 resistance gene, indicated that effector alleles able to overcome these resistance genes are already present in natural populations of the pathogen, thus questioning the durability of resistance that can be provided by these genes in the field. © 2013 BSPP AND JOHN WILEY & SONS LTD.

  17. Influences of a-tocopherol on cholesterol metabolism and fatty streak development in apolipoprotein E-deficient mice fed an atherogenic diet

    Directory of Open Access Journals (Sweden)

    Peluzio M.C.G.

    2001-01-01

    Full Text Available Although the role of oxidized lipoproteins is well known in atherogenesis, the role of vitamin E supplementation is still controversial. There is also little information about cholesterol metabolism (hepatic concentration and fecal excretion in the new models of atherosclerosis. In the present study, we evaluated the effect of moderate vitamin E supplementation on cholesterol metabolism and atherogenesis in apolipoprotein E (apo E-deficient mice. Apo E-deficient mice were fed an atherogenic diet containing 40 or 400 mg/kg of alpha-tocopherol acetate for 6 weeks. Total cholesterol in serum and liver and 3-OH-alpha-sterols in feces, and fecal excretion of bile acids were determined and histological analyses of aortic lesion were performed. A vitamin E-rich diet did not affect body weight, food intake or serum cholesterol. Serum and hepatic concentrations of cholesterol as well as sterol concentration in feces were similar in both groups. However, when compared to controls, the alpha-tocopherol-treated mice showed a reduction of about 60% in the atherosclerotic lesions when both the sum of lesion areas and the average of the largest lesion area were considered. These results demonstrate that supplementation of moderate doses of alpha-tocopherol was able to slow atherogenesis in apo E-deficient mice and to reduce atherogenic lipoproteins without modifying the hepatic pool or fecal excretion of cholesterol and bile acids.

  18. Improved Line Tracing Methods for Removal of Bad Streaks Noise in CCD Line Array Image—A Case Study with GF-1 Images

    Directory of Open Access Journals (Sweden)

    Bo Wang

    2017-04-01

    Full Text Available Remote sensing images could provide us with tremendous quantities of large-scale information. Noise artifacts (stripes, however, made the images inappropriate for vitalization and batch process. An effective restoration method would make images ready for further analysis. In this paper, a new method is proposed to correct the stripes and bad abnormal pixels in charge-coupled device (CCD linear array images. The method involved a line tracing method, limiting the location of noise to a rectangular region, and corrected abnormal pixels with the Lagrange polynomial algorithm. The proposed detection and restoration method were applied to Gaofen-1 satellite (GF-1 images, and the performance of this method was evaluated by omission ratio and false detection ratio, which reached 0.6% and 0%, respectively. This method saved 55.9% of the time, compared with traditional method.

  19. Study of pomegranate (Punica granatum L. peel extract containing anthocyanins on fatty streak formation in the renal arteries in hypercholesterolemic rabbits

    Directory of Open Access Journals (Sweden)

    Fatemeh Sharifiyan

    2016-01-01

    Conclusion: The results of this study indicate that consumption of pomegranate peel extract containing anthocyanins (polyphenol content 1 g/kg diet despite of a significant increase in serum antioxidant capacity cannot protect the kidneys from hypercholesterolemia-induced damages during the treatment period.

  20. Study of pomegranate (Punica granatum L.) peel extract containing anthocyanins on fatty streak formation in the renal arteries in hypercholesterolemic rabbits.

    Science.gov (United States)

    Sharifiyan, Fatemeh; Movahedian-Attar, Ahmad; Nili, Nafiseh; Asgary, Sedigheh

    2016-01-01

    The influence of the supplementation of pomegranate peel extract containing anthocyanins on atherosclerotic plaque formation induced by hypercholesterolemia was investigated in renal arteries in rabbits. After the determination of polyphenol and anthocyanin's content of P. granatum peel hydroalcoholic extract, 30 male rabbits were randomly divided into three groups. They were fed basic diet, hypercholesterolemic diet and hypercholesterolemic diet along with P. granatum peel extract (polyphenolic content for each rabbit 1 g/kg diet) for 2 month. Blood samples were collected at the begging, middle and end of the study in order to measure lipid concentration and oxidative and antioxidative status variables, and renal arteries were taken for the assessment of atherosclerotic plaques at the end of the study. The results reveal that P. granatum peel extract significantly increases serum antioxidant capacity in the extract recipient group in comparison with hypercholesterolemic control (P 0.05). The results of this study indicate that consumption of pomegranate peel extract containing anthocyanins (polyphenol content 1 g/kg diet) despite of a significant increase in serum antioxidant capacity cannot protect the kidneys from hypercholesterolemia-induced damages during the treatment period.

  1. Bmpr1a is required for proper migration of the AVE through regulation of Dkk1 expression in the pre-streak mouse embryo.

    Science.gov (United States)

    Miura, Shigeto; Singh, Ajeet Pratap; Mishina, Yuji

    2010-05-01

    Here, we report a novel mechanism regulating migration of the anterior visceral endoderm (AVE) by BMP signaling through BMPRIA. In Bmpr1a-deficient (Bmpr-null) embryos, the AVE does not migrate at all. In embryos with an epiblast-specific deletion of Bmpr1a (Bmpr1a(null/flox); Sox2Cre embryos), the AVE cells migrate randomly from the distal end of embryos, resulting in an expansion of the AVE. Dkk1, which is normally expressed in the anterior proximal visceral endoderm (PxVE), is downregulated in Bmpr-null embryos, whereas it is circumferentially expressed in Bmpr1a(null/flox); Sox2Cre embryos at E5.75-6.5. These results demonstrate an association of the position of Dkk1 expressing cells with direction of the migration of AVE. In Bmpr1a(null/flox); Sox2Cre embryos, a drastic decrease of WNT signaling is observed at E6.0. Addition of WNT3A to the culture of Bmpr1a(null/flox); Sox2Cre embryos at E5.5 restores expression patterns of Dkk1 and Cer1. These data indicate that BMP signaling in the epiblast induces Wnt3 and Wnt3a expression to maintain WNT signaling in the VE, resulting in downregulation of Dkk1 to establish the anterior expression domain. Thus, our results suggest that BMP signaling regulates the expression patterns of Dkk1 for anterior migration of the AVE. Published by Elsevier Inc.

  2. AcEST: BP919850 [AcEST

    Lifescience Database Archive (English)

    Full Text Available KPVRISDSRFFDINGFHPNIQSAKS 93 >sp|P14988|REP_MSVK Replication-associated protein OS=Maize streak virus genotype A (isolate Kenya...ication-associated protein A OS=Maize streak virus genotype A (isolate Kenya) GN=

  3. Practical issues of retrieving isolated attosecond pulses

    International Nuclear Information System (INIS)

    Wang He; Chini, Michael; Khan, Sabih D; Chen, Shouyuan; Gilbertson, Steve; Feng Ximao; Mashiko, Hiroki; Chang Zenghu

    2009-01-01

    The attosecond streaking technique is used for the characterization of isolated extreme ultraviolet (XUV) attosecond pulses. This type of measurement suffers from low photoelectron counts in the streaked spectrogram, and is thus susceptible to shot noise. For the retrieval of few- or mono-cycle attosecond pulses, high-intensity streaking laser fields are required, which cause the energy spectrum of above-threshold ionized (ATI) electrons to overlap with that of the streaked photoelectrons. It is found by using the principal component generalized projections algorithm that the XUV attosecond pulse can accurately be retrieved for simulated and experimental spectrograms with a peak value of 50 or more photoelectron counts. Also, the minimum streaking intensity is found to be more than 50 times smaller than that required by the classical streaking camera for retrieval of pulses with a spectral bandwidth supporting 90 as transform-limited pulse durations. Furthermore, spatial variation of the streaking laser intensity, collection angle of streaked electrons and time delay jitter between the XUV pulse and streaking field can degrade the quality of the streaked spectrogram. We find that even when the XUV and streaking laser focal spots are comparable in size, the streaking electrons are collected from a 4π solid angle, or the delay fluctuates by more than the attosecond pulse duration, the attosecond pulses can still be accurately retrieved. In order to explain the insusceptibility of the streaked spectrogram to these factors, the linearity of the streaked spectrogram with respect to the streaking field is derived under the saddle point approximation.

  4. Deep Joint Rain Detection and Removal from a Single Image

    OpenAIRE

    Yang, Wenhan; Tan, Robby T.; Feng, Jiashi; Liu, Jiaying; Guo, Zongming; Yan, Shuicheng

    2016-01-01

    In this paper, we address a rain removal problem from a single image, even in the presence of heavy rain and rain streak accumulation. Our core ideas lie in the new rain image models and a novel deep learning architecture. We first modify an existing model comprising a rain streak layer and a background layer, by adding a binary map that locates rain streak regions. Second, we create a new model consisting of a component representing rain streak accumulation (where individual streaks cannot b...

  5. A Bayesian test for the hot hand phenomenon

    NARCIS (Netherlands)

    Wetzels, R.; Tutschkow, D.; Dolan, C.; van der Sluis, S.; Dutilh, G.; Wagenmakers, E.-J.

    The hot hand phenomenon refers to the popular notion that the performance of sports players is punctuated by streaks of exceptional performance. During these streaks, the player is said to be ‘hot’, or even ‘on fire’. Unfortunately, when it comes to assessing evidence for the hot hand phenomenon,

  6. Proceedings of the 18th international congress on high speed photography and photonics

    International Nuclear Information System (INIS)

    Anon.

    1988-01-01

    The subjects addressed at the conference presented in this book include image converter and intensifier cameras; opto-mechanical high speed cameras; X-ray generator and radiography; and Holography and interferometry. The papers include Flash x-ray cineradiography; New picosecond synchroscan streak image tube; and Streak camera CCD readout system

  7. Sexual dimorphism and plumage characteristics of juvenile Cape ...

    African Journals Online (AJOL)

    Juveniles, or birds in their first year, were genetically sexed. Standardised photographs were taken of plucked juvenile breast feathers and analysed using Adobe Photoshop. Pixel counts were taken to analyse the streak coverage of a single feather. A scale from 0 to 3 was used to score streak intensity of the entire breast.

  8. Screening for virulence genes in Escherichia coli O157:H7 obtained ...

    African Journals Online (AJOL)

    Escherichia coli (E.coli) O157:H7 was isolated by enrichment in Tryptone soy broth at elevated temperature and streaking on Eosin Methylene Blue agar. Typical green colonies with metallic sheen were Gram stained, after which biochemical tests and streaking on cefuxime-tellurite sorbitol MacConkey agar was done, ...

  9. SECRET OF A BALL LIGHTNING

    Directory of Open Access Journals (Sweden)

    E.V. Savich

    2013-04-01

    Full Text Available A ball lightning is a natural phenomenon that occurs at a streak lightning stroke with its action by thermal and magnetic energy releasing around the streak lightning channel and transforming, in the end, the surrounding air into a steam cloud that transits into ferroelectric state under the magnetic field action.

  10. meat and milk products in Addis Ababa, Ethiopia

    African Journals Online (AJOL)

    The CAMP test was undertaken using Staphylococcus aureus (ClP: Collection of Institute of Pasteur, 5710) and. Rhodoccocus equi (CIP 5869). They were streaked in single lines across a sheep blood agar plate so that the two cultures were parallel and diametrically opposite. Test strains were then streaked at right angles ...

  11. Effect of environment and cultivar on the expression of banana ...

    African Journals Online (AJOL)

    Banana (Musa spp.) is grown for subsistence and income generation by 80% of small scale farmers all year round in Kenya hence it is an important food security crop. However viral diseases such as banana streak disease (BSD), caused by Banana streak virus, hamper the production of the crop. BSV has been reported to ...

  12. A study of the optimal conditions for glucoamylases obtained from ...

    African Journals Online (AJOL)

    Aghomotsegin

    (2004) as modified by Okoye et al. (2013). Tiger nut starch was fractionated into amylose and amylopectin. The wet amylopectin was left open on shelve to allow micro- organisms to grow on it. A loop of each organism was streaked onto potato dextrose agar PDA under the flame of Bunsen burner. Streaks were made from ...

  13. Antagonistic properties of microogranisms associated with cassava ...

    African Journals Online (AJOL)

    The antagonistic properties of indigenous microflora from cassava starch, flour and grated cassava were investigated using the conventional streak, novel ring and well diffusion methods. Antagonism was measured by zone of inhibition between the fungal plug and bacterial streak/ring. Bacillus species were more effective ...

  14. Prevalence of Pseudomonas aeruginosa in Clinical Samples and its ...

    African Journals Online (AJOL)

    Dr Olaleye

    swabs were streaked on sterile Chocolate agar, and. MacConkey (Oxoid) agar plates by first made primary inoculum and then streaked out using sterile wire loop to give a discrete colonies. The plates were incubated at 370C for 24 hours. Suspected colonies were stored on slant for further tests. HVS and ECS: The swabs ...

  15. Video deraining and desnowing using temporal correlation and low-rank matrix completion.

    Science.gov (United States)

    Kim, Jin-Hwan; Sim, Jae-Young; Kim, Chang-Su

    2015-09-01

    A novel algorithm to remove rain or snow streaks from a video sequence using temporal correlation and low-rank matrix completion is proposed in this paper. Based on the observation that rain streaks are too small and move too fast to affect the optical flow estimation between consecutive frames, we obtain an initial rain map by subtracting temporally warped frames from a current frame. Then, we decompose the initial rain map into basis vectors based on the sparse representation, and classify those basis vectors into rain streak ones and outliers with a support vector machine. We then refine the rain map by excluding the outliers. Finally, we remove the detected rain streaks by employing a low-rank matrix completion technique. Furthermore, we extend the proposed algorithm to stereo video deraining. Experimental results demonstrate that the proposed algorithm detects and removes rain or snow streaks efficiently, outperforming conventional algorithms.

  16. Transition Delay in Hypersonic Boundary Layers via Optimal Perturbations

    Science.gov (United States)

    Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

    2016-01-01

    The effect of nonlinear optimal streaks on disturbance growth in a Mach 6 axisymmetric flow over a 7deg half-angle cone is investigated in an e ort to expand the range of available techniques for transition control. Plane-marching parabolized stability equations are used to characterize the boundary layer instability in the presence of azimuthally periodic streaks. The streaks are observed to stabilize nominally planar Mack mode instabilities, although oblique Mack mode disturbances are destabilized. Experimentally measured transition onset in the absence of any streaks correlates with an amplification factor of N = 6 for the planar Mack modes. For high enough streak amplitudes, the transition threshold of N = 6 is not reached by the Mack mode instabilities within the length of the cone, but subharmonic first mode instabilities, which are destabilized by the presence of the streaks, reach N = 6 near the end of the cone. These results suggest a passive flow control strategy of using micro vortex generators to induce streaks that would delay transition in hypersonic boundary layers.

  17. Impact-generated winds on Mars

    Science.gov (United States)

    Schultz, Peter H.; Quintana, Stephanie N.

    2017-08-01

    Bright and dark wind streaks across Mars record wind patterns related to atmospheric circulation. In some cases these streaks represent erosion of a surface veneer; in others, they indicate sand grains mobilized by strong vortices shed off of positive relief, such as crater rims. While many streaks change length or orientation over time, others not only remain unchanged but also may indicate a completely different wind direction. These permanent streaks could reflect past circulation patterns in response to conditions related to orbital forcing (e.g., Thomas and Veverka, 1979; Veverka et al., 1981). Here, however, we focus on a subset of permanent wind streaks unrelated to global circulation, rather to impact-generated winds that can extend more than 500 km away from the crater. Nighttime images from the Mars Odyssey's Thermal Emission Imaging System (THEMIS) reveal certain large craters (> 15 km in diameter) having sets of thermally bright streaks that radiate from certain fresh impact craters. These streaks extend from pre-existing topographic highs (crater rims, wrinkle ridges) beyond the continuous ejecta deposits to more than 6 crater radii, unrelated to secondary craters. For illustration, this contribution primarily focuses on the 20 km-diameter Santa Fe crater in Chryse Planitia. Context Camera (CTX) images reveal that these streaks correspond to zones of erosion. The thermally bright rays in nighttime images correlate with regions where coarser materials have been exposed, not always resolved even in HiRISE images. Models of the impact process indicate impact-generated vapor most likely generated intense winds that scoured the region, well before arrival of secondary craters and later ejecta run-out flows. Pre-existing relief (such as crater rims) disturbed this flow and generated intense cross-flow instabilities resulting in long parallel streaks.

  18. “Hot Hand” in the National Basketball Association Point Spread Betting Market: A 34-Year Analysis

    Directory of Open Access Journals (Sweden)

    Benjamin Waggoner

    2014-11-01

    Full Text Available Several articles have looked at factors that affect the adjustments of point spreads, based on hot hands or streaks, for smaller durations of time. This study examines these effects for 34 regular seasons in the National Basketball Association (NBA. Estimating a Seemingly Unrelated Regression model using all 34 seasons, all streaks significantly impacted point spreads and difference in actual points. When estimating each season individually, differences emerged particularly examining winning and losing streaks of six games or more. The results indicate both the presence of momentum effects and the gambler’s fallacy.

  19. Magnetic Resonance, Functional (fMRI) -- Brain

    Science.gov (United States)

    ... difficult to obtain clear images due to streak artifacts from the metallic objects. Patient movement can have ... American College of Radiology (ACR), 1891 Preston White Drive, Reston, VA 20191-4397. Commercial reproduction or multiple ...

  20. MICROBIOLOGICAL QUALITIES OF GREEN CHUTNEYS SOLD IN ...

    African Journals Online (AJOL)

    enrichment broth followed by enrichment on Rappaport Vassilidis medium and selection on Xylose-Lysine Deoxycholate agar, presumptive colonies were serotyped; for Shigella loopful of enrichment broth were streaked onto Salmonella, Shigella and ...

  1. Personal computer (PC) based image processing applied to fluid mechanics research

    Science.gov (United States)

    Cho, Y.-C.; Mclachlan, B. G.

    1987-01-01

    A PC based image processing system was employed to determine the instantaneous velocity field of a two-dimensional unsteady flow. The flow was visualized using a suspension of seeding particles in water, and a laser sheet for illumination. With a finite time exposure, the particle motion was captured on a photograph as a pattern of streaks. The streak pattern was digitized and processsed using various imaging operations, including contrast manipulation, noise cleaning, filtering, statistical differencing, and thresholding. Information concerning the velocity was extracted from the enhanced image by measuring the length and orientation of the individual streaks. The fluid velocities deduced from the randomly distributed particle streaks were interpolated to obtain velocities at uniform grid points. For the interpolation a simple convolution technique with an adaptive Gaussian window was used. The results are compared with a numerical prediction by a Navier-Stokes commputation.

  2. Personal Computer (PC) based image processing applied to fluid mechanics

    Science.gov (United States)

    Cho, Y.-C.; Mclachlan, B. G.

    1987-01-01

    A PC based image processing system was employed to determine the instantaneous velocity field of a two-dimensional unsteady flow. The flow was visualized using a suspension of seeding particles in water, and a laser sheet for illumination. With a finite time exposure, the particle motion was captured on a photograph as a pattern of streaks. The streak pattern was digitized and processed using various imaging operations, including contrast manipulation, noise cleaning, filtering, statistical differencing, and thresholding. Information concerning the velocity was extracted from the enhanced image by measuring the length and orientation of the individual streaks. The fluid velocities deduced from the randomly distributed particle streaks were interpolated to obtain velocities at uniform grid points. For the interpolation a simple convolution technique with an adaptive Gaussian window was used. The results are compared with a numerical prediction by a Navier-Stokes computation.

  3. Nuclear test experimental science

    International Nuclear Information System (INIS)

    Struble, G.L.; Middleton, C.; Bucciarelli, G.; Carter, J.; Cherniak, J.; Donohue, M.L.; Kirvel, R.D.; MacGregor, P.; Reid, S.

    1989-01-01

    This report discusses research being conducted at Lawrence Livermore Laboratory under the following topics: prompt diagnostics; experimental modeling, design, and analysis; detector development; streak-camera data systems; weapons supporting research

  4. Nuclear test experimental science

    Energy Technology Data Exchange (ETDEWEB)

    Struble, G.L.; Middleton, C.; Bucciarelli, G.; Carter, J.; Cherniak, J.; Donohue, M.L.; Kirvel, R.D.; MacGregor, P.; Reid, S. (eds.)

    1989-01-01

    This report discusses research being conducted at Lawrence Livermore Laboratory under the following topics: prompt diagnostics; experimental modeling, design, and analysis; detector development; streak-camera data systems; weapons supporting research.

  5. Catalase activity of cassava (Manihot esculenta) plant under African ...

    African Journals Online (AJOL)

    aghomotsegin

    . E-mail: sabastina.amoako@kintampo-hrc.org. Tel: +233543550743. Abbreviations: CBSD, Cassava brown streak disease; ACMV, African cassava mosaic virus; ROS, reactive oxygen species; H2O2, hydrogen peroxide; BSA, bovine serum ...

  6. What Is Macular Edema?

    Medline Plus

    Full Text Available ... streaks in my vision? Oct 05, 2017 When will I be able to see after vitrectomy surgery for a macular hole? Jan 24, ... Answers Free Newsletter Get ophthalmologist-reviewed tips and information about ...

  7. Combating a Global Threat to a Clonal Crop : Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control

    NARCIS (Netherlands)

    Arango Isaza, Rafael E.; Diaz-Trujillo, Caucasella; Dhillon, Braham; Aerts, Andrea; Carlier, Jean; Crane, Charles F.; de Jong, Tristan V.; de Vries, Ineke; Dietrich, Robert; Farmer, Andrew D.; Fereira, Claudia Fortes; Garcia, Suzana; Guzman, Mauricio; Hamelin, Richard C.; Lindquist, Erika A.; Mehrabi, Rahim; Quiros, Olman; Schmutz, Jeremy; Shapiro, Harris; Reynolds, Elizabeth; Scalliet, Gabriel; Souza, Manoel; Stergiopoulos, Ioannis; Van der Lee, Theo A. J.; De Wit, Pierre J. G. M.; Zapater, Marie-Francoise; Zwiers, Lute-Harm; Grigoriev, Igor V.; Goodwin, Stephen B.; Kema, Gert H. J.

    2016-01-01

    Black Sigatoka or black leaf streak disease, caused by the Dothideomycete fungus Pseudocercospora fijiensis (previously: Mycosphaerella fijiensis), is the most significant foliar disease of banana worldwide. Due to the lack of effective host resistance, management of this disease requires frequent

  8. The genomes of Mycosphaerella graminicola and M. fijiensis

    NARCIS (Netherlands)

    Goodwin, S.B.; Kema, G.H.J.

    2014-01-01

    Mycosphaerella graminicola (synonym: Zymoseptoria tritici) and Mycosphaerella fijiensis in the Ascomycetes order Capnodiales are economically important pathogens causing Septoria tritici blotch of wheat and black Sigatoka or leaf streak of banana, respectively. Both diseases occur wherever their

  9. Variability of volatile organic compounds emitted by seedlings of ...

    African Journals Online (AJOL)

    Variability of volatile organic compounds emitted by seedlings of seven African maize varieties when infested by adult Cicadulina storeyi China leafhopper vectors of maize streak virus. S Oluwafemi, MA Birkett, J Caulfield, JA Pickett ...

  10. Estimates of saltation threshold and erosion rates on Mars

    Science.gov (United States)

    Iversen, J. D.; White, B. R.; Greeley, R.; Pollack, J. B.

    1975-01-01

    The Mariner 9 photographs of the Martian surface include many which show crater-associated streaks caused by atmospheric winds. Due to the low density atmosphere of Mars, the wind speeds necessary to move surface particles and thus cause the streaks are apparently very high. The atmospheric-boundary-layer wind tunnel has been used to determine threshold speeds for particles of varying density and diameter and the results for small particles have been extrapolated to estimate somewhat lower threshold speeds on Mars than previous estimates. A series of streak modeling tests is used to derive an erosion-rate correlation function, which is in turn used to estimate erosion rates to the lee of some of the craters on Mars which exhibited time-dependent streak behavior during the mission.

  11. 78 FR 61505 - Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for Taylor's...

    Science.gov (United States)

    2013-10-03

    ... discuss their ongoing or future management strategies for the Taylor's checkerspot butterfly and streaked... with scientific expertise that included familiarity with the Taylor's checkerspot butterfly and its... to ongoing management for Taylor's checkerspot butterfly habitat. Our Response: We have worked...

  12. Coherent structure generation in near-wall turbulence

    Science.gov (United States)

    Schoppa, W.; Hussain, F.

    2002-02-01

    We present a new mechanism for generation of near-wall streamwise vortices which dominate turbulence phenomena in boundary layers using linear perturbation analysis and direct numerical simulations of turbulent channel flow. The base flow, consisting of the mean velocity profile and low-speed streaks (free from any initial vortices), is shown to be linearly unstable to sinuous normal modes only for relatively strong streaks, i.e. for wall inclination angles of streak vortex lines exceeding 50°. Analysis of streaks extracted from fully developed near-wall turbulence indicates that about 20% of streak regions in the buffer layer exceed the strength threshold for instability. More importantly, these unstable streaks exhibit only moderate (twofold) normal-mode amplification, the growth being arrested by self-annihilation of streak-flank normal vorticity due to viscous cross-diffusion. We present here an alternative, streak transient growth (STG) mechanism, capable of producing much larger (tenfold) linear ampliflcation of x-dependent disturbances. Note the distinction of STG responsible for perturbation growth on a streak velocity distribution U(y, z) from prior transient growth analyses of the (streakless) mean velocity U(y). We reveal that streamwise vortices are generated from the more numerous normal-mode-stable streaks, via a new STG-based scenario: (i) transient growth of perturbations leading to formation of a sheet of streamwise vorticity [omega]x (by a ‘shearing’ mechanism of vorticity generation), (ii) growth of sinuous streak waviness and hence [partial partial differential]u/[partial partial differential]x as STG reaches nonlinear amplitude, and (iii) the [omega]x sheet’s collapse via stretching by [partial partial differential]u/[partial partial differential]x (rather than rollup) into streamwise vortices. Significantly, the three-dimensional features of the (instantaneous) streamwise vortices of x-alternating sign generated by STG agree well with

  13. Temperature measurements of electrostatic shocks in laser-produced counter-streaming plasmas

    Science.gov (United States)

    Morita, T.; Sakawa, Y.; Kuramitsu, Y.; Tanji, H.; Aoki, H.; Ide, T.; Shibata, S.; Onishi, N.; Gregory, C.; Diziere, A.; Waugh, J.; Woolsey, N.; Sano, Y.; Shiroshita, A.; Shigemori, K.; Ozaki, N.; Kimura, T.; Miyanishi, K.; Kodama, R.; Koenig, M.; Takabe, H.

    2011-11-01

    Collisionless shocks in counter-streaming plasmas, created by the high-power laser system Gekko XII HIPER, are investigated. The shock structure and density are measured by optical diagnostics such as shadowgraphy, interferometry, and streaked interferometry. The plasma density and temperature are estimated from self-emission measurements with visible light by streaked optical pyrometer and gated optical imager. Brightness temperatures are calculated considering the efficiency of the detectors, and electron temperatures are estimated.

  14. The multifocal electroretinogram (mfERG) in the pig

    DEFF Research Database (Denmark)

    Voss Kyhn, Maria; Kiilgaard, Jens Folke; Lopez, Ana Garcia

    2007-01-01

    To establish a method allowing multifocal electroretinography (mfERG) recording with simultaneous fundus monitoring on anaesthetized pigs. In addition we characterize the peaks of the porcine mfERG trace, and compare the visual streak area with the optic nerve head, a known non-response area....... Finally we illustrate the feasibility of the method by performing mfERG after an induced laser burn in the visual streak....

  15. High speed photography, videography, and photonics V; Proceedings of the Meeting, San Diego, CA, Aug. 17-19, 1987

    Science.gov (United States)

    Johnson, Howard C. (Editor)

    1988-01-01

    Recent advances in high-speed optical and electrooptic devices are discussed in reviews and reports. Topics examined include data quantification and related technologies, high-speed photographic applications and instruments, flash and cine radiography, and novel ultrafast methods. Also considered are optical streak technology, high-speed videographic and photographic equipment, and X-ray streak cameras. Extensive diagrams, drawings, graphs, sample images, and tables of numerical data are provided.

  16. Assemblage et organisation de nanoparticules semi-conductrices dans des réseaux de défauts topologiques smectiques

    OpenAIRE

    Pelliser, Laurent

    2016-01-01

    This thesis discusses the use of a liquid crystal structure, called oily streaks, formed by the competition of two antagonist anchoring on each side of a submicrometric liquid crystal layer, to achieve the self-alignment and, for higher concentration, the organization, of single photon emitters on an individual scale. We discuss the internal layout of these oily streaks through measurements done in polarized optical microscopy, ellipsometry and X-ray diffraction analysis. These data sets are ...

  17. High throughput multiplex real time PCR assay for the simultaneous quantification of DNA and RNA viruses infecting cassava plants

    OpenAIRE

    Otti, Gerald; Bouvaine, Sophie; Kimata, Bernadetha; Mkamillo, Geoffrey; Kumar, Lava; Tomlins, Keith; Maruthi, M.N.

    2016-01-01

    Aims: To develop a multiplex TaqMan-based real-time PCR assay (qPCR) for the simultaneous detection and quantification of both RNA and DNA viruses affecting cassava (Manihot esculenta) in eastern Africa.\\ud \\ud Methods and Results: The diagnostic assay was developed for two RNA viruses; Cassava brown streak virus (CBSV) and Uganda cassava brown streak virus (UCBSV) and two predominant DNA viruses; African cassava mosaic virus (ACMV) and East African cassava mosaic virus (EACMV), which cause t...

  18. Stabilization of Hypersonic Boundary Layers by Linear and Nonlinear Optimal Perturbations

    Science.gov (United States)

    Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

    2017-01-01

    The effect of stationary, finite-amplitude, linear and nonlinear optimal perturbations on the modal disturbance growth in a Mach 6 axisymmetric flow over a 7 deg. half-angle cone with 0:126 mm nose radius and 0:305 m length is investigated. The freestream parameters (M = 6, Re(exp 1) = 18 x 10(exp. 6) /m) are selected to match the flow conditions of a previous experiment in the VKI H3 hypersonic tunnel. Plane-marching parabolized stability equations are used in conjunction with a partial-differential equation based planar eigenvalue analysis to characterize the boundary layer instability in the presence of azimuthally periodic streaks. The streaks are observed to stabilize nominally planar Mack mode instabilities, although oblique Mack mode and first-mode disturbances are destabilized. Experimentally measured transition onset in the absence of any streaks correlates with an amplification factor of N = 6 for the planar Mack modes. For high enough streak amplitudes, the transition threshold of N = 6 is not reached by the Mack mode instabilities within the length of the cone; however, subharmonic first-mode instabilities, which are destabilized by the presence of the streaks, do reach N = 6 near the end of the cone. The highest stabilization is observed at streak amplitudes of approximately 20 percent of the freestream velocity. Because the use of initial disturbance profiles based on linear optimal growth theory may yield suboptimal control in the context of nonlinear streaks, the computational predictions are extended to nonlinear optimal growth theory. Results show that by using nonlinearly optimal perturbation leads to slightly enhanced stabilization of plane Mack mode disturbances as well as reduced destabilization of subharmonic first-mode disturbances.

  19. Can megavoltage computed tomography reduce proton range uncertainties in treatment plans for patients with large metal implants?

    Science.gov (United States)

    Newhauser, Wayne D.; Giebeler, Annelise; Langen, Katja M.; Mirkovic, Dragan; Mohan, Radhe

    2008-05-01

    Treatment planning calculations for proton therapy require an accurate knowledge of radiological path length, or range, to the distal edge of the target volume. In most cases, the range may be calculated with sufficient accuracy using kilovoltage (kV) computed tomography (CT) images. However, metal implants such as hip prostheses can cause severe streak artifacts that lead to large uncertainties in proton range. The purposes of this study were to quantify streak-related range errors and to determine if they could be avoided by using artifact-free megavoltage (MV) CT images in treatment planning. Proton treatment plans were prepared for a rigid, heterogeneous phantom and for a prostate cancer patient with a metal hip prosthesis using corrected and uncorrected kVCT images alone, uncorrected MVCT images and a combination of registered MVCT and kVCT images (the hybrid approach). Streak-induced range errors of 5-12 mm were present in the uncorrected kVCT-based patient plan. Correcting the streaks by manually assigning estimated true Hounsfield units improved the range accuracy. In a rigid heterogeneous phantom, the implant-related range uncertainty was estimated at based plan and the uncorrected MVCT-based plan. The hybrid planning approach yielded the best overall result. In this approach, the kVCT images provided good delineation of soft tissues due to high-contrast resolution, and the streak-free MVCT images provided smaller range uncertainties because they did not require artifact correction.

  20. Gambler's fallacy, hot hand belief, and the time of patterns

    Directory of Open Access Journals (Sweden)

    Hongbin Wang

    2010-04-01

    Full Text Available The gambler's fallacy and the hot hand belief have been classified as two exemplars of human misperceptions of random sequential events. This article examines the times of pattern occurrences where a fair or biased coin is tossed repeatedly. We demonstrate that, due to different pattern composition, two different statistics (mean time and waiting time can arise from the same independent Bernoulli trials. When the coin is fair, the mean time is equal for all patterns of the same length but the waiting time is the longest for streak patterns. When the coin is biased, both mean time and waiting time change more rapidly with the probability of heads for a streak pattern than for a non-streak pattern. These facts might provide a new insight for understanding why people view streak patterns as rare and remarkable. The statistics of waiting time may not justify the prediction by the gambler's fallacy, but paying attention to streaks in the hot hand belief appears to be meaningful in detecting the changes in the underlying process.

  1. Golden-ratio rotated stack-of-stars acquisition for improved volumetric MRI.

    Science.gov (United States)

    Zhou, Ziwu; Han, Fei; Yan, Lirong; Wang, Danny J J; Hu, Peng

    2017-12-01

    To develop and evaluate an improved stack-of-stars radial sampling strategy for reducing streaking artifacts. The conventional stack-of-stars sampling strategy collects the same radial angle for every partition (slice) encoding. In an undersampled acquisition, such an aligned acquisition generates coherent aliasing patterns and introduces strong streaking artifacts. We show that by rotating the radial spokes in a golden-angle manner along the partition-encoding direction, the aliasing pattern is modified, resulting in improved image quality for gridding and more advanced reconstruction methods. Computer simulations were performed and phantom as well as in vivo images for three different applications were acquired. Simulation, phantom, and in vivo experiments confirmed that the proposed method was able to generate images with less streaking artifact and sharper structures based on undersampled acquisitions in comparison with the conventional aligned approach at the same acceleration factors. By combining parallel imaging and compressed sensing in the reconstruction, streaking artifacts were mostly removed with improved delineation of fine structures using the proposed strategy. We present a simple method to reduce streaking artifacts and improve image quality in 3D stack-of-stars acquisitions by re-arranging the radial spoke angles in the 3D partition direction, which can be used for rapid volumetric imaging. Magn Reson Med 78:2290-2298, 2017. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  2. Fast imaging applications in the Nuclear Test Program

    International Nuclear Information System (INIS)

    Lear, R.

    1983-01-01

    Applications of fast imaging employ both streak cameras and fast framing techniques. Image intensifier tubes are gated to provide fast two-dimensional shutters of 2 to 3 ns duration with shatter ratios of greater than 10 6 and resolution greater than 10 4 pixels. Shutters of less than 1 ns have been achieved with experimental tubes. Characterization data demonstrate the importance of tube and pulser design. Streak cameras are used to simultaneously record temporal and intensity information from up to 200 spatial points. Streak cameras are combined with remote readout for downhole uses and are coupled to fiber optic cables for uphole uses. Optical wavelength multiplexing is being studied as a means of compressing additional image data onto optical fibers. Performance data demonstrate trade-offs between image resolution and system sensitivity

  3. High speed photography, videography, and photonics III; Proceedings of the Meeting, San Diego, CA, August 22, 23, 1985

    Science.gov (United States)

    Ponseggi, B. G. (Editor); Johnson, H. C. (Editor)

    1985-01-01

    Papers are presented on the picosecond electronic framing camera, photogrammetric techniques using high-speed cineradiography, picosecond semiconductor lasers for characterizing high-speed image shutters, the measurement of dynamic strain by high-speed moire photography, the fast framing camera with independent frame adjustments, design considerations for a data recording system, and nanosecond optical shutters. Consideration is given to boundary-layer transition detectors, holographic imaging, laser holographic interferometry in wind tunnels, heterodyne holographic interferometry, a multispectral video imaging and analysis system, a gated intensified camera, a charge-injection-device profile camera, a gated silicon-intensified-target streak tube and nanosecond-gated photoemissive shutter tubes. Topics discussed include high time-space resolved photography of lasers, time-resolved X-ray spectrographic instrumentation for laser studies, a time-resolving X-ray spectrometer, a femtosecond streak camera, streak tubes and cameras, and a short pulse X-ray diagnostic development facility.

  4. Numerical and experimental study of wave shaper effects on detonation wave front

    Directory of Open Access Journals (Sweden)

    Khalid Naeem

    2018-02-01

    Full Text Available In the current study, streak camera was used to find concentricity of the assembly during detonation, investigate and compare shock front within the high explosive and behavior of the shock front on the surface of the liner, one containing wave shaper and the other without wave shaper. Streaks revealed that the whole assembly was concentric till the formation of the jet. Observed streaks vindicate the uniform propagation of shock front in both the cases. Results obtained for shock front velocities are in agreement with those obtained from simulations. In the presence of wave shaper higher shock front velocity was observed both in simulation and experiment. Simulation without wave-shaper showed that shock front struck the copper cone at grazing angle while in the presence of wave-shaper it struck at an angle of 125°.

  5. Diagnostics systems developments and applications for laser fusion experiments

    International Nuclear Information System (INIS)

    Coleman, L.W.

    1977-01-01

    A variety of systems are required for adequate diagnostics of laser fusion experiments. Picosecond scale temporal measurements are typically made with ultrafast streak cameras. Visible and x-ray sensitive streak cameras with resolutions of 6 psec and 15 psec, respectively, and dynamic recording range in excess of 10 3 are in regular use on experiments at Livermore. The characteristics of these cameras and their applications to target experiment diagnostics are described. The development and testing of a prototype ultrafast framing system is discussed. Because of the need for ''real time'' data acquisition, analysis, and control systems, techniques for providing directly computer interfaced image data from streak and framing cameras and optical imaging systems are being developed. The status of these developments and the characteristics of the computer interfaced data and control systems on Argus and Shiva are summarized

  6. Analysis of web defects by correlating 1-D Morlet and 2-D Mexican hat wavelet transforms

    Science.gov (United States)

    Lewalle, Jacques; Keller, D. Steven

    2005-11-01

    The manufacturing processes for paper and similar non-woven fiber webs can affect end-use properties. In this paper, we document a new wavelet-based method of product diagnostic. The methods combines 1-dimensional Morlet and isotropic 2-dimensional Mexican hat wavelets, with wavelet-based filtering and denoising techniques. Two samples produced in pilot machines by different forming methods are examined for variations in their mass per unit area - the grammage. The grammage maps are decomposed into three layers: one associated with the nearly-periodic grammage streaks at large scale, one associated with flocs or related medium-size structures, and the background which combines pixel-size fluctuations and large-scale stochastic modulations. By correlating the structure and background fluctuations with the streaks local phase, we show that one sample exhibits formation streaks (statistical variations in properties other than mean grammage), which are not found in the other.

  7. Molecular dynamics studies of tweed and ω-phase instabilities in B2Ni62.5Al37.5 alloys

    International Nuclear Information System (INIS)

    Becquart, C.; Clapp, P.C.; Rifkin, J.A.

    1992-01-01

    Diffuser TEM and x-ray data has been reported by several research groups that has been interpreted in terms of both tweed and ω-phase instabilities. This patent describes computer simulations of 1,024 atom arrays that were run at various temperatures using the Voter-Chen Embedded Atom Method interactions. If the extra Ni atoms were placed at random on the Al sub-lattice of the B2 structure, at low temperatures both left-angle 110 right-angle and left-angle 112 right-angle diffuse streaking were observed in reciprocal lattice plots, indicative of tweed and ω-phase instabilities, respectively. The atomic displacements causing the left-angle 110 right-angle diffuse streaking could generally be classified as {110} left-angle 1 - 10 right-angle local shears, in agreement with accepted models of tweed. However, the displacements producing the left-angle 112 right-angle streaking were best described as coordinated atom row motions in left-angle 111 right-angle interplanar collapse. Both types of diffuse streaking deceased with increasing temperature, but the left-angle 110 right-angle type was stronger at all temperatures and persisted to higher temperatures. Furthermore, the atomic displacements producing the streaking were static at low temperatures (persistence times greater than 1000 vibrational periods) but became dynamic at higher temperatures (persistence times of the order of a few vibrational periods). Another interesting result was that by merely rearranging the extra Ni atoms into an ordered superlattice pattern, virtually no diffuse streaking of any type was observed at any temperature, strongly suggesting that compositional disorder (or other kinds of point defects) are essential to induce tweed instabilities

  8. First measurements of electron-beam transit times and micropulse elongation in a photoelectric injector at the High-Brightness Accelerator FEL (HIBAF)

    Energy Technology Data Exchange (ETDEWEB)

    Lumpkin, A.H.; Carlsten, B.E.; Feldman, R.B.

    1990-01-01

    Key aspects of the dynamics of a photoelectric injector (PEI) on the Los Alamos High-Brightness Accelerator FEL (HIBAF) facility have been investigated using a synchroscan streak camera. By phase-locking the streak camera sweep to the reference 108.3 MHz rf signal, the variations of micropulse temporal elongations (30 to 80% over the drive-laser pulse length) and of transit times (25 ps for a 16{degree}-phase change) were observed for the first time. These results were in good agreement with PARMELA simulations. 2 refs., 8 figs.

  9. A key for identifying faecal smears to detect domestic infestations of triatomine bugs

    Directory of Open Access Journals (Sweden)

    C.J. Schofield

    1986-03-01

    Full Text Available Early detection of residual populations of domestic triatomine bugs that survive insecticide treatment is a key component of successful evaluation and vigilance for Chagas disease control. We have recently demonstrated that sheets of paper, tacked on to the walls of infested houses, can become streaked with the faeces of triatomine bugs and thus reveal thepresence of an infestation. In thispaper, wepresent a simple key to differentiate the faecal streaks of triatomine bugs from those of other domestic arthropods such as cockroaches, ticks and cimicid bedbugs.

  10. Chirped Auger electron emission due to field-assisted post-collision interaction

    Directory of Open Access Journals (Sweden)

    Bonitz M.

    2013-03-01

    Full Text Available We have investigated the Auger decay in the temporal domain by applying a terahertz streaking light field. Xenon and krypton atoms were studied by implementing the free-electron laser in Hamburg (FLASH as well as a source of high-order harmonic radiation combined with terahertz pulses from an optical rectification source. The observed linewidth asymmetries in the streaked spectra suggest a chirped Auger electron emission which is understood in terms of field-assisted post-collision interaction. The experimentally obtained results agree well with model calculations.

  11. Manuel′s asteroid disruption technique

    Directory of Open Access Journals (Sweden)

    Manuel John

    2015-01-01

    Full Text Available A seventy-year-old male presented with dense asteroid hyalosis in both eyes. He had undergone cataract extraction in one eye 3 years ago, and the other eye had immature cataract. Both the autorefractor and dilated streak retinoscopy did not give readings and subjective visual improvement could not be achieved. Immediately following YAG posterior capsulotomy and anterior vitreous asteroid disruption, the vision improved to 20/20 with recordable auto refractor and streak retinoscopy values. Our initial experience indicates that the treatment is simple, safe and effective but needs controlled and prospective studies to confirm its long-term safety.

  12. Initial Demonstration of 9-MHz Framing Camera Rates on the FAST UV Drive Laser Pulse Trains

    Energy Technology Data Exchange (ETDEWEB)

    Lumpkin, A. H. [Fermilab; Edstrom Jr., D. [Fermilab; Ruan, J. [Fermilab

    2016-10-09

    We report the configuration of a Hamamatsu C5680 streak camera as a framing camera to record transverse spatial information of green-component laser micropulses at 3- and 9-MHz rates for the first time. The latter is near the time scale of the ~7.5-MHz revolution frequency of the Integrable Optics Test Accelerator (IOTA) ring and its expected synchroton radiation source temporal structure. The 2-D images are recorded with a Gig-E readout CCD camera. We also report a first proof of principle with an OTR source using the linac streak camera in a semi-framing mode.

  13. Nonlinear Spectral Signatures and Spatiotemporal Behavior of Stimulated Raman Scattering from Single Laser Speckles

    International Nuclear Information System (INIS)

    Vu, H.X.; Yin, L.; DuBois, D.F.; Bezzerides, B.; Dodd, E.S.

    2005-01-01

    Simulations are reported of the Thomson scatter spectrum of electrostatic waves (ESWs) excited in single laser hot spots by backward stimulated Raman scattering (BSRS). Under conditions similar those in the recent experiments of Kline et al. [Phys. Rev. Lett. 94, 175003 (2005)], a spectral streak, resulting from the trapping-induced frequency shift of the ESW, is found for high wave-number ESWs, similar to the observations. This shift and parametric frequency matching lead to isolated BSRS pulses. Modes with acoustic dispersion, resulting from the trapping-modified electron velocity distribution, can enhance the frequency range of the streak

  14. Formation of counterstreaming plasmas for collisionless shock experiment

    Directory of Open Access Journals (Sweden)

    Ide T.

    2013-11-01

    Full Text Available Process of counterstreaming plasma generation for laser irradiation of the innner-surface of the first plane of a double-plane target is investigated. The image taken by streaked self-emission optical pyrometer and radiation hydrodynamic simulation show the plasma from the second plane is ablated by radiation almost at the laser timing. After ∼5ns, increase in brightness and the generation of a plasma on the second plane are observed. According to the contemporary measurement of streaked interferometry, this is caused by the ablation of the second plane by the first plane plasma.

  15. Approaches to ultrafast neutron detectors

    International Nuclear Information System (INIS)

    Wang, C.L.; Kalibjian, R.; Singh, M.S.

    1984-01-01

    We discuss two approaches to obtain detectors of very high temporal resolution. In the first approach, uranium-coated cathode is used in a streak tube configuration. Secondary electrons accompanying the fission fragments from a neutron-uranium reaction are accelerated, focussed and energy analyzed through a pinhole and streaked. Calculations show that 20 ps time-resolution can be obtained. In the second approach, a uranium-coated cathode is integrated into a transmission line. State-of-the-art technology indicates that time resolution of 20 ps can be obtained by gating the cathode with a fast electric pulse

  16. Bunch length measurements in the SLC damping ring

    International Nuclear Information System (INIS)

    Decker, F.J.; Limberg, T.; Minty, M.; Ross, M.

    1993-05-01

    The synchrotron light of the SLC damping ring was used to measure the bunch length with a streak camera at different times in the damping cycle. There are bunch length oscillations after injection, different equilibrium length during the cycle due to rf manipulations to avoid microwave instability oscillations, and just before extraction there is a longitudinal phase space rotation (bunch muncher) to shorten the bunch length. Measurements under these different conditions are presented and compared with BPM pulse height signals. Calibration and adjustment issues and the connection of the streak camera to the SLC control system are also discussed

  17. Time response characteristics of X-ray detector system on Silex-Ⅰ laser facility

    International Nuclear Information System (INIS)

    Yi Rongqing; He Xiao'an; Li Hang; Du Huabing; Zhang Haiying; Cao Zhurong

    2013-01-01

    On the Silex-Ⅰ laser facility, the time response characteristics of XRD detector were studied. A laser with a pulse of 32 fs and a wavelength of 800 nm was used to irradiate a plane Au target. X-ray calibrated method of time of exposure X-ray framing camera and time resolution of X-ray streak camera was explored. The time response characteristics of XRD detector and time process of X-ray emission were obtained from experiment. We obtained X-ray calibration method of time of exposure X-ray framing camera and time resolution of X-ray streak camera. (authors)

  18. Semiconductors Investigated by Time Resolved Spectroscopy Using Femtosecond and Picosecond Laser Technology.

    Science.gov (United States)

    1986-03-08

    Measured by a Streak Camera, H. Zarrabi , R. R. Alfano, Phys. Rev. B32, 3947 (1985). Picosecond Pulses Produced by Mode Locking an Nd:Glass Laser with Kodak...Excitation" by Hassan J. Zarrabi , 1985, AFOSR General Optronics 3. "Picosecond and Steady State Spectroscopy of Defects in Semi-Insulating CdSe" by David L

  19. Gentamycin inhibits the growth of Malassezia pachydermatis in culture

    NARCIS (Netherlands)

    Aspiroz, C.; Gilaberte, Y.; Rezusta, A.; Boekhout, T.; Rubio, M.C.

    2010-01-01

    Background: Malassezia pachydermatis is a yeast of importance in both veterinary and human medicine. Aims: To know if M. pachydermatis grow on micological media with high concentrations of gentamycin. Methods: Twenty M. pachydermatis strains were streaked on Sabouraud Dextrose Agar plates with

  20. What Is Macular Edema?

    Medline Plus

    Full Text Available ... an Ophthalmologist Answers Would a macular wrinkle cause black streaks in my vision? Oct 05, 2017 When will I be able to see after vitrectomy surgery for a macular hole? Jan 24, 2016 Can Prolensa drops help a ...

  1. Influence of untreated and bacterial-treated Yamuna water on the ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-09-01

    Sep 1, 2009 ... were streaked on nutrient agar medium and stored at 4○C in refrigerator. The isolated bacterial cultures (Rhodopseudomonas palustrid MTCC- 8756, Rhodobacter sp., Nitrobacter sp., Lactoba- cillus sp., Cellulo-monas sp. and Bacillus subtilis MTCC-8114) were identified on the basis of Bergey's Manual of ...

  2. The viruses and virus diseases of cassava in Africa | Thresh | African ...

    African Journals Online (AJOL)

    The epidemiology of African cassava mosaic has been studied in few of the very diverse agro-ecological zones in which the disease occurs and there is even less information on brown streak. These are serious constraints in attempts to develop effective control measures. Information is also lacking on possible interactions ...

  3. Identification of pH tolerant Bradyrhizobium japonicum strains and ...

    African Journals Online (AJOL)

    Owner

    grown soybean plants (cv. PK 472) collected from Adaptive Trial. Center (ATC), Bundi (Rajasthan). Serial dilution agar plate method as described in Somasegaran and Hoben (1994) was employed with 20E medium (Werner et al., 1975), for the purpose of isolation. Isolates were streak purified on the same medium and the ...

  4. Discrimination of Pathogenic vs. Nonpathogenic Francisella tularensis and Burkholderia pseudomallei Using Proteomics Mass Spectrometry

    Science.gov (United States)

    2011-03-01

    F. tularensis LVS and B. thailandensis E264. Working cultures were prepared by streaking cells from cryopreserved stocks onto chocolate agar (CA...100 ml of brain heart infusion (BHI) supplemented with cysteine (1% final concentration) for F. tularensis and 100 ml of nutrient broth (NB) for

  5. X-ray CT Metal Artifact Reduction Using Wavelet Domain L-0 Sparse Regularization

    NARCIS (Netherlands)

    Mehranian, Abolfazl; Ay, Mohammad Reza; Rahmim, Arman; Zaidi, Habib

    X-ray computed tomography (CT) imaging of patients with metallic implants usually suffers from streaking metal artifacts. In this paper, we propose a new projection completion metal artifact reduction (MAR) algorithm by formulating the completion of missing projections as a regularized inverse

  6. Molecular flexibility of Mycobacterium tuberculosis ribosome ...

    Indian Academy of Sciences (India)

    2013-11-06

    -G,. E. coli LJ14 (frrts) cells were transformed with pTrcMtEF-G and pACDHMtRRF mutants. Independent colonies were grown to saturation at 30°C, streaked out on LB agar plates containing either ampicillin (100 μg/mL) and ...

  7. Study of shock coalescence in laser-irradiated targets

    International Nuclear Information System (INIS)

    Coe, S.E.; Willi, O.; Afshar-Rad, T.; Rose, S.J.

    1988-01-01

    We report on the first direct experimental observation of the coalescence of two shocks induced by a shaped laser pulse. Optical streak photography of the rear surface of aluminum multiple step targets was used to study the breakout of these shocks and observe their behavior. The experimental results are compared with simulations by a one-dimensional Lagrangian hydrodynamic code

  8. Characteristic bacteriolytic activities of Staphylococcus hyicus.

    OpenAIRE

    Lämmler, C

    1989-01-01

    Staphylococcus hyicus demonstrated characteristic bacteriolytic activities towards a Micrococcus luteus reference strain. This lytic activity was demonstrated on medium containing M. luteus cells as large zones of transparency around the culture streak. Smaller zones of transparency were observed with Staphylococcus intermedius, Staphylococcus chromogenes, and some strains of Staphylococcus aureus but not with other coagulase-negative staphylococcal species. The distribution and extent of the...

  9. Investigation of the fluid flow dynamic parameters for Newtonian and non-Newtonian materials: an approach to understanding the fluid flow-like structures within fault zones

    Science.gov (United States)

    Tanaka, H.; Shiomi, Y.; Ma, K.-F.

    2017-11-01

    To understand the fault zone fluid flow-like structure, namely the ductile deformation structure, often observed in the geological field (e.g., Ramsay and Huber The techniques of modern structure geology, vol. 1: strain analysis, Academia Press, London, 1983; Hobbs and Ord Structure geology: the mechanics of deforming metamorphic rocks, Vol. I: principles, Elsevier, Amsterdam, 2015), we applied a theoretical approach to estimate the rate of deformation, the shear stress and the time to form a streak-line pattern in the boundary layer of viscous fluids. We model the dynamics of streak lines in laminar boundary layers for Newtonian and pseudoplastic fluids and compare the results to those obtained via laboratory experiments. The structure of deformed streak lines obtained using our model is consistent with experimental observations, indicating that our model is appropriate for understanding the shear rate, flow time and shear stress based on the profile of deformed streak lines in the boundary layer in Newtonian and pseudoplastic viscous materials. This study improves our understanding of the transportation processes in fluids and of the transformation processes in fluid-like materials. Further application of this model could facilitate understanding the shear stress and time history of the fluid flow-like structure of fault zones observed in the field.[Figure not available: see fulltext.

  10. Moult, pied plumage and relationships within the genus of the Black ...

    African Journals Online (AJOL)

    Moult, pied plumage and relationships within the genus of the Black Sparrowhawk Accipiter melanoleucus. ... Although the streaked juvenile plumage of the Black Sparrowhawk is similar to those of the Northern Goshawk A. gentilis, Meyer's Goshawk A. meyerianus and Henst's Goshawk A. hentsi, adult and juvenile ...

  11. Some indications from instability results about the effectiveness of ...

    Indian Academy of Sciences (India)

    bypass” transition. ... of the streaks attain inflexional points both in y and z directions leading to inflexional insta- bility. In oblique .... The linear stability operator is not self-adjoint, and the resulting non-orthogonality of the eigenfunctions is known ...

  12. High voltage short plus generation based on avalanche circuit

    International Nuclear Information System (INIS)

    Hu Yuanfeng; Yu Xiaoqi

    2006-01-01

    Simulate the avalanche circuit in series with PSPICE module, design the high voltage short plus generation circuit by avalanche transistor in series for the sweep deflection circuit of streak camera. The output voltage ranges 1.2 KV into 50 ohm load. The rise time of the circuit is less than 3 ns. (authors)

  13. Microbiological Screening of a Starter Culture of Probiotic Status ...

    African Journals Online (AJOL)

    ... an anaerobic jar at 37°C for 48hours. The isolates were stored in sterile agar slants after purification by successive streaking on MRS and ST agar before being subjected to characterization. Microbiological screening (morphological, physiological and biochemical tests) was done to identify characterized a working isolate ...

  14. Bacteriology of the Anterior Genitalia of the Domestic House Cat ...

    African Journals Online (AJOL)

    The bacteriology of the anterior genitalia of the domestic house cat was determined using vaginal swabs collected from sixty apparently healthy female domestic cats (20 kittens, 20 pregnant and 20 non-pregnant adults). The swabs were streaked on blood agar, Mac Conkey agar and eosin methylene blue agar plates ...

  15. Genetic diversity of maize germplasm lines and implications for ...

    African Journals Online (AJOL)

    Evaluation of genetic distances between maize inbred lines can be used to maximise heterosis in hybrids. This study was conducted to determine genetic distances among 25 maize inbred lines in the Maize streak virus disease (MSVD) QTL region to develop MSVD-resistant hybrids. The inbred lines were genotyped using ...

  16. Complete Genomic Sequence of Maize Rough Dwarf Virus, a Fijivirus Transmitted by the Small Brown Planthopper

    OpenAIRE

    Lv, Mingfang; Xie, Li; Yang, Jian; Chen, Jianping; Zhang, Heng-Mu

    2016-01-01

    The nucleotide sequences of the 10 genomic segments of an Italian isolate of maize rough dwarf virus (MRDV) were determined. This first complete genomic sequence of MRDV will help understand the phylogenetic relationships among group 2 fijiviruses and especially the closely related rice black-streaked dwarf virus, which is also found to naturally infect maize.

  17. Grain yield, stem borer and disease resistance of new maize hybrids ...

    African Journals Online (AJOL)

    Although ten hybrids yielded over 8 t/ha, two hybrids, CKPH09001 and CKPH08033, gave the highest yield of 8.99 and 8.86 t/ha, respectively, in Kiboko. There were significant differences among the hybrids in resistance to leaf rust and maize streak virus in Kakamega. The intensity of foliar diseases was high in Kakamega ...

  18. Farm-level Evaluation of Monocropping and Intercropping Impacts ...

    African Journals Online (AJOL)

    Grain yield was higher in the monoculture system than in intercropping with beans irrespective of maize variety. Stalkborers and maize streak virus were the main pest and disease respectively which caused maize grain yield losses which were, on average, higher for the local than the improved variety in monoculture.

  19. Nonlinear partial differential equations: Integrability, geometry and related topics

    Science.gov (United States)

    Krasil'shchik, Joseph; Rubtsov, Volodya

    2017-03-01

    Geometry and Differential Equations became inextricably entwined during the last one hundred fifty years after S. Lie and F. Klein's fundamental insights. The two subjects go hand in hand and they mutually enrich each other, especially after the "Soliton Revolution" and the glorious streak of Symplectic and Poisson Geometry methods in the context of Integrability and Solvability problems for Non-linear Differential Equations.

  20. Coronae, Haloes and Glories

    Indian Academy of Sciences (India)

    A point source of monochromatic light viewed through a cloud of particles would appear surrounded by a corona or halo due to diffraction by the particles. The radiations. Fig. 66. Diffraction corona due to. Lycopodium spores showing. a). Granular structure in monochromatic light, and b) radial streaks in white light. diffracted ...

  1. S¯adhan¯a Vol. 28, 2003 Subject Index

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    319. ARMA model. Time-variant power spectral analysis of heart rate time series by autoregressive moving average (ARMA) method. 1027. Aspheric and plano grinding. Ductile streaks in precision grinding of hard and brittle materials. 915. Austenitic stainless steels. Solidification cracking in austensitic stainless steel welds.

  2. African Journal of Biotechnology - Vol 2, No 7 (2003)

    African Journals Online (AJOL)

    Production of monoclonal and polyclonal antibodies against a Nigerian isolate of banana streak virus · EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT. B.O. Agindotan, G. Thottappilly, A. Uwaifo, S. Winter, 171-178 ...

  3. Identification of an emergent bacterial blight of garlic in Brazil

    Science.gov (United States)

    Outbreaks of a bacterial blight disease occurred on garlic (Allium sativum) cultivars Roxo Caxiense, Quiteria and Cacador in Southern Brazil, and threatened the main production regions of Rio Grande do Sul State. Symptoms were characterized by watersoaked reddish streaks along the leaf midrib, follo...

  4. Validity of spherical quantitative refractometry: application to laser-produced plasmas

    International Nuclear Information System (INIS)

    Benattar, R.; Popovics, C.

    1983-01-01

    We report an experimental laser technique of quantitative Schlieren imaging of spherical plasmas combined with streak camera recording. We show that quantitative refractometry applies for small values of refraction angles, i.e., when the law giving the refraction angle versus the impact parameter of rays passing through the plasma is a linearly decreasing function

  5. A possible tradeoff between developmental rate and pathogen ...

    Indian Academy of Sciences (India)

    ampR gene was streaked. These vials were then incubated at. 37. ◦. C for 24 h to allow bacterial growth. At this point, a lawn of bacteria was visible on the surface of the medium in the vials. ... To com- pare pathogen resistance across selection regimes and sexes, we transformed the primary data on time to death of individ-.

  6. WEST AFRICAN JOURNAL OF MEDICINE

    African Journals Online (AJOL)

    Abbreviations: CD, Crohn's disease; ESR, Erythrocyte sedimentation rate; IBD, Inflammatory bowel disease; UC, Ulcerative colitis; ..... Stool frequency. Normal. > Normal. > Normal. 1–2 ×/day. 3–4 ×/day. 5 ×/day. Rectal bleeding. None. Streaks. Obvious. Mostly blood. Mucosal appearance ... conditions and consumption of.

  7. Evaluation of new generation maize steak virus (MSV) resistant ...

    African Journals Online (AJOL)

    Five new generations of maize streak virus (MSV) resistant varieties were evaluated along with two checks in replicated trials and for two years in a Southern Guinea Savanna Ecology of Nigeria, which is an endemic zone for the disease. Difference in grain yield between favourable growing season in 2002 and ...

  8. "Invisible" Killer

    Science.gov (United States)

    ... crawlspace Sooting Debris or soot falling from chimney, fireplace or appliance Fireplace Rusting or water streaking on vent/chimney Loose ... panel • Sooting • Debris or soot falling from chimney, fireplace, or appliances • Loose or disconnected vent/chimney, fireplace ...

  9. Bleeding esophageal varices

    Science.gov (United States)

    ... amount of bleeding, the only symptom may be dark or black streaks in the stools. If larger amounts of bleeding occur, symptoms ... exam which may show: Bloody or black stool (in a rectal exam) Low ... the use of a camera on a flexible tube to examine the esophagus ...

  10. Potential pitfalls in the anorectal region during CT colonography: A ...

    African Journals Online (AJOL)

    2017-02-28

    Feb 28, 2017 ... FIGURE 9: (a) 3D endoluminal view showing artefacts (black arrows) obscuring visualisation of the rectum; (b) 2D axial of the same patient shows streak artefacts limiting visualisation of colon (red arrow). This is a typical example of artefacts caused by hip prostheses; (c) 3D view shows 'black hole' artefact.

  11. What Is Macular Edema?

    Medline Plus

    Full Text Available ... an Ophthalmologist Answers Would a macular wrinkle cause black streaks in my vision? Oct 05, 2017 When will I be able to see after vitrectomy surgery for a macular hole? Jan 24, 2016 After a person develops ocular ...

  12. Effectiveness of gamma ray irradiation and ethyl methane ...

    African Journals Online (AJOL)

    채소실험실

    2013-07-24

    Jul 24, 2013 ... plantlets were detected in pre (white streaked leaf and bigger petiole with distorted leaf) and post acclimations (dwarf .... media (Nongwoo Bio, Korea) was covered with white mulch. Alter- nate planting holes were ..... Patil A, Taware SP, Oak MD, Tamhankar SA, Rao VS (2007). Improvement of oil quality in ...

  13. Permian Triassic palynofloral transition in Chintalapudi area ...

    Indian Academy of Sciences (India)

    grained grey sandstone, carbonaceous shale, grey shale and shaly coal. The sequence between 596.40 and 606 m consists of greyish white sandstone and clayey sandstone with bands of coal/carbonaceous streaks. The bore hole was closed at the depth of 606.00 m in Kamthi Formation. Lithology along with position of ...

  14. The Hot Hand Exists in Volleyball and Is Used for Allocation Decisions

    Science.gov (United States)

    Raab, Markus; Gula, Bartosz; Gigerenzer, Gerd

    2012-01-01

    The "hot hand" belief in sports refers to the conviction that a player has a higher chance of making a shot after two or three successful shots than after two or three misses (resulting in "streaks"). This belief is usually considered a cognitive fallacy, although it has been conjectured that in basketball the defense will…

  15. High speed photography, videography, and photonics IV; Proceedings of the Meeting, San Diego, CA, Aug. 19, 20, 1986

    Science.gov (United States)

    Ponseggi, B. G. (Editor)

    1986-01-01

    Various papers on high-speed photography, videography, and photonics are presented. The general topics addressed include: photooptical and video instrumentation, streak camera data acquisition systems, photooptical instrumentation in wind tunnels, applications of holography and interferometry in wind tunnel research programs, and data analysis for photooptical and video instrumentation.

  16. New species of Pachyteria, a genus of Longicorn Coleoptera

    NARCIS (Netherlands)

    Ritsema Cz., C.

    1881-01-01

    Length of the male 28 mm., of the female 32 mm.; breadth at the shoulders in the male 8,5 mm., in the female 10 mm. The head (labrum and mandibles excepted), the prothorax and a streak on the apical half of the elytra along the suture metallic green, the remaining portion of the apical half of the

  17. Inventaire et incidence des insectes inféodes à la culture du fonio ...

    African Journals Online (AJOL)

    This relationship between insects and Digitaria exilis allows a proliferation of Cicadulina gender, vector of the maize streak virus until they attack the plants on which the damage is most important. Several weed species infest Digitaria exilis and their diversity as well as the diversity of insect species captured on this culture is ...

  18. Sadhana | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Home; Journals; Sadhana. Houzhi Cai. Articles written in Sadhana. Volume 40 Issue 8 December 2015 pp 2333-2339. Electron accelerating unit for streak image tubes · Fangke Zong Qinlao Yang Houzhi Cai Li Gu Xiang Li Jingjin Zhang · More Details Abstract Fulltext PDF. An electron accelerating unit is proposed for use ...

  19. Coronae, Haloes and Glories

    Indian Academy of Sciences (India)

    surrounded by a corona or halo due to diffraction by the particles. The radiations. Fig. 66. Diffraction corona due to. Lycopodium spores showing. a). Granular structure in monochromatic light, and b) radial streaks in white light. diffracted by the particles and reaching the retina of the eye and focussed there~n are superposed.

  20. The Effects of Acidification of Drinking Water on Selected Biological Phenomena in Mice.

    Science.gov (United States)

    1979-05-01

    followed by 6subculture on 5% sheep-blood agar, Columbia colistin nalidixic acid 6 6 agar, and MacConkey agar plates to separate individual organisms. Each...streaked on 5% sheep blood agar plates, MacConkey plates, and by swirling the swabs in tubes of thioglycollate medium without indicator. Each organism

  1. Browse Title Index

    African Journals Online (AJOL)

    Items 3601 - 3650 of 11090 ... Vol 12, No 16 (2013), Effect of environment and cultivar on the expression of banana streak disease symptoms in Kenya, Abstract PDF .... Vol 9, No 52 (2010), Effect of fertilizer treatment on the antimicrobial activity of the leaves of Ocimum gratissimum (L.) and Gongronema latifolium> (Benth) ...

  2. Ultrafast polarized fluorescence measurements on tryptophan and a tryptophan-containing peptide

    NARCIS (Netherlands)

    Larsen, O.F.A.; van Stokkum, I.H.M.; Pandit, A.; van Grondelle, R.; van Amerongen, H.

    2003-01-01

    In this work polarized picosecond fluorescence measurements were performed on isolated tryptophan and tryptophan in a small 22-mer peptide using a streak camera coupled to a spectrograph as a detection system. In both cases the fluorescence decay was multiexponential with decay times of ∼500 ps and

  3. Ultrafast polarized fluorescence measurements on Tryptophan and a Tryptophan-containing peptide

    NARCIS (Netherlands)

    Larsen, O.F.A.; Stokkum, van I.H.M.; Pandit, A.; Grondelle, van R.; Amerongen, van H.

    2003-01-01

    In this work polarized picosecond fluorescence measurements were performed on isolated tryptophan and tryptophan in a small 22-mer peptide using a streak camera coupled to a spectrograph as a detection system. In both cases the fluorescence decay was multiexponential with decay times of similar

  4. Direct Numerical Simulation Sediment Transport in Horizontal Channel

    International Nuclear Information System (INIS)

    Uhlmann, M.

    2006-01-01

    We numerically simulate turbulent flow in a horizontal plane channel over a bed of mobile particles. All scales of fluid motion are resolved without modeling and the phase interface is accurately represented. Our results indicate a possible scenario for the onset of erosion through collective motion induced by buffer-layer streaks. (Author) 27 refs

  5. Time-Resolved Analysis of High-Power-Laser Produced Plasma Expansion in Vacuum

    International Nuclear Information System (INIS)

    Aliverdiev, A.; Batani, D.; Dezulian, R.; Malka, V.; Vinci, T.; Koenig, M.; Benuzzi-Mounaix, A.

    2005-01-01

    Here we consider the results of an experimental investigation of the temporal evolution of plasmas produced by high power laser irradiation of various types of target materials. The experiment was performed at the LULI Laboratory (Ecole Polytechnique, Paris). We have developed a method to analyze time-resolved streak-camera images and analyzed a number of results obtained with various materials

  6. Journal of Biosciences | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Biosciences. Ruoxue Liu. Articles written in Journal of Biosciences. Volume 32 Issue 6 September 2007 pp 1119-1131 Articles. Productivity and biochemical properties of green tea in response to full-length and functional fragments of HpaGXooc, a harpin protein from the bacterial rice leaf streak ...

  7. Cdx2 is essential for embryonic axial growth and identity of the adult intestinal stem cells

    NARCIS (Netherlands)

    Simmini, Salvatore

    2015-01-01

    During mouse development, progenitor cells, allocated along the primitive streak and in the tailbud, lay down descendants that contribute to the generation of all primordia of the trunk and tail tissues of the embryo. Evidence suggested that a pool of these progenitor cells, with stem cell-like

  8. The gambler's fallacy in retrospect

    Directory of Open Access Journals (Sweden)

    William J. Matthews

    2010-04-01

    Full Text Available Oppenheimer and Monin (2009 recently found that subjectively rare events are taken to indicate a longer preceding sequence of unobserved trials than subjectively common events, an effect which they refer to as the retrospective gambler's fallacy. The current paper extends this idea to the situation where participants judge the likelihood of streak continuation. Participants were told about a streak produced by a random process (coin flips or human performance (basketball shots, and either predicted the next outcome or inferred the immediately preceding outcome. For the coin scenarios, participants tended to expect streak termination -- the gambler's fallacy --- and this effect was the same for predictions and retrospective inferences. In the basketball scenarios, no overall bias was found in either prospective or retrospective judgments. The results support Oppenheimer and Monin's suggestion that reconstruction of the past entails the same heuristics as prediction of the future; they also support the idea that the nature of the data-generating process is a key determinant of whether people fall into the gambler's fallacy. It is suggested that the term retrospective gambler's fallacy be used to describe situations where a streak is taken to indicate that the preceding unobserved outcome was of the opposite type, and that the phenomenon discovered by Oppenheimer and Monin be referred to as retrospective representativeness, or a retrospective belief in the law of small numbers.

  9. Fulltext PDF

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    319. ARMA model. Time-variant power spectral analysis of heart rate time series by autoregressive moving average (ARMA) method. 1027. Aspheric and plano grinding. Ductile streaks in precision grinding of hard and brittle materials. 915. Austenitic stainless steels. Solidification cracking in austensitic stainless steel welds.

  10. 86_444 - 447_BIO 051 Shamsuddeen

    African Journals Online (AJOL)

    userpc

    Water is one of the most important of all natural resources known on earth. It is important to all living organisms, most ecological systems, human health, food production and economic development (Postel .... Triple sugar iron agar slant was streaked and stabbed (butt) with a saline suspension of the test organism and was ...

  11. Process and Energy Optimization Assessment Level II Analysis. Rock Island Arsenal, IL

    Science.gov (United States)

    2005-08-01

    coat. A proper paint job should have a smooth, continuous, adherent paint film free of runs, sags, blisters, orange peel, streaks, craters, blotches ...room was later renovated in the 1960s and a hot zeolite lime /soda ash system was installed. A newer hot zeolite system was in- stalled in the late

  12. Differentiating defects in red oak lumber by discriminant analysis using color, shape, and density

    Science.gov (United States)

    B. H. Bond; D. Earl Kline; Philip A. Araman

    2002-01-01

    Defect color, shape, and density measures aid in the differentiation of knots, bark pockets, stain/mineral streak, and clearwood in red oak, (Quercus rubra). Various color, shape, and density measures were extracted for defects present in color and X-ray images captured using a color line scan camera and an X-ray line scan detector. Analysis of variance was used to...

  13. Clinical and Molecular Consequences of NF1 Microdeletion

    Science.gov (United States)

    2009-08-01

    sequence pairing needed to effect re- combination in humans. REFERENCES Badge RM, Yardley J, Jeffreys AJ, Armour JA. 2000. Crossover breakpoint mapping...atrophic, hyperpigmented, or hypopigmented, linear streaks and punctuate cribriform scarring and telang- iectases along the lines of Blaschko. Fat

  14. Hypercholesterolaemia in pregnancy as a predictor of adverse ...

    African Journals Online (AJOL)

    support the fetus, the placenta, and the yolk sac have yet to be established, and those effects could markedly influence the outcome of pregnancy and long-term .... streak formation occurs in human fetal aortas and is greatly enhanced by maternal hypercholesterolemia. In- timal accumulation of low density lipoprotein and its.

  15. Coat protein deletion mutants elicit more severe symptoms than wild-type virus in multiple cereal hosts

    Science.gov (United States)

    The coat protein (CP) of Wheat streak mosaic virus (WSMV; genus Tritimovirus, family Potyviridae) tolerates deletion of amino acids 36 to 84 for efficient systemic infection of wheat. This study demonstrates that deletion of CP amino acids 58 to 84, but not 36 to 57, from WSMV genome induced severe ...

  16. Journal of Biosciences | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Productivity and biochemical properties of green tea in response to full-length and functional fragments of HpaGXooc, a harpin protein from the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola · Xiaojing Wu Tingquan Wu Juying Long Qian Yin Yong Zhang Lei Chen Ruoxue Liu Tongchun Gao Hansong ...

  17. 12038_2016_9592_Supplementary 1..5

    Indian Academy of Sciences (India)

    Supplementary text 3. Protocol for using the Biolog plates. We used GEN III MicroPlateTM along with inoculating fluid A (IF-A) for estimating the phenotypic variation. Both plates and inoculating fluid were stored at 4°C and thawed at room temperature before use. A part of glycerol stock was streaked on nutrient agar plate for ...

  18. Combating a global threat to a clonal crop: banana black sigatoka pathogen pseudocercospora fijiensis (synonym mycosphaerella fijiensis) genomes reveal clues for disease control

    Science.gov (United States)

    Mycosphaerella fijiensis is the fungal pathogen that causes black Sigatoka or leaf streak disease of banana. Control of this disease requires weekly applications of fungicides in most cultivation areas. Major problems for disease management are fungicide resistance and the lack of effective genes fo...

  19. The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana

    Science.gov (United States)

    Mycosphaerella fijiensis is a fungal pathogen of banana and the causal agent of the devastating Black Sigatoka or black leaf streak disease. Its control requires weekly fungicide applications when bananas are grown under disease-conducive conditions, which mostly represent precarious tropical enviro...

  20. Ultrafast polarized fluorescence measurements on monomeric and self-associated melittin

    NARCIS (Netherlands)

    Pandit, A.; Larsen, O.F.A.; Stokkum, van I.H.M.; Grondelle, van R.; Kraayenhof, R.; Amerongen, van H.

    2003-01-01

    The anisotropic and magic-angle fluorescence decay of the single tryptophan (Trp) residue of melittin, a bee venom peptide, was investigated by time-resolved fluorescence anisotropy using a streak camera setup. The peptide was dissolved either in distilled water or in Hepes/NaOH buffer containing

  1. Quantitative Comparison of Commercial and Non-Commercial Metal Artifact Reduction Techniques in Computed Tomography

    NARCIS (Netherlands)

    Wagenaar, Dirk; van der Graaf, Emiel R.; van der Schaaf, Arjen; Greuter, Marcel J. W.

    2015-01-01

    Objectives Typical streak artifacts known as metal artifacts occur in the presence of strongly attenuating materials in computed tomography (CT). Recently, vendors have started offering metal artifact reduction (MAR) techniques. In addition, a MAR technique called the metal deletion technique (MDT)

  2. Defense Gene Expression Associated with responses during the Biotrophic Phase of Mycosphaerella fjiensis Morelet, Infection in Banana.

    NARCIS (Netherlands)

    Rodriguez, H.E.; Rodriguez-Arango, E.; Morales, J.; Kema, G.H.J.; Arango, R.E.

    2016-01-01

    Banana black leaf streak, caused by Mycosphaerella fijiensis M. Morelet, is a primary phytosanitary concern in export of this fruit around the world. To develop improved cultivars resistant to this disease, an understanding of host response to infection is necessary. In this study, we obtained

  3. DISTRIBUTION OF COAGULASE-NEGATIVE STAPHYLOCOCCI SPECIES ON TEAT SKIN AND IN MILK SAMPLES FROM DAIRY COWS IN AUTOMATIC MILKING SYSTEMS

    DEFF Research Database (Denmark)

    Mahmmod, Yasser Saadeldien Ibrahim; Svennesen, Line; Pedersen, Karl

    . After vortexing, 0.01 mL of each quarter milk sample and 0.1 mL of each quarter teat swab are streaked simultaneously on Staphylococcus selective medium (SA Select) and calf blood agar. Colonies from right hind and left front quarters suspected of being CNS in milk and/or teat skin samples (cut-off five...

  4. Identification of genes that have undergone adaptive evolution in ...

    African Journals Online (AJOL)

    Cassava (Manihot esculenta) is a vital food security crop and staple in Africa, yet cassava brown streak disease (CBSD) and cassava mosaic disease result in substantial yield losses. The aim of this study was to identify genes that have undergone positive selection during adaptive evolution, from CBSD resistant, tolerant ...

  5. Denoising and artefact reduction in dynamic flat detector CT perfusion imaging using high speed acquisition: first experimental and clinical results

    Science.gov (United States)

    Manhart, Michael T.; Aichert, André; Struffert, Tobias; Deuerling-Zheng, Yu; Kowarschik, Markus; Maier, Andreas K.; Hornegger, Joachim; Doerfler, Arnd

    2014-08-01

    Flat detector CT perfusion (FD-CTP) is a novel technique using C-arm angiography systems for interventional dynamic tissue perfusion measurement with high potential benefits for catheter-guided treatment of stroke. However, FD-CTP is challenging since C-arms rotate slower than conventional CT systems. Furthermore, noise and artefacts affect the measurement of contrast agent flow in tissue. Recent robotic C-arms are able to use high speed protocols (HSP), which allow sampling of the contrast agent flow with improved temporal resolution. However, low angular sampling of projection images leads to streak artefacts, which are translated to the perfusion maps. We recently introduced the FDK-JBF denoising technique based on Feldkamp (FDK) reconstruction followed by joint bilateral filtering (JBF). As this edge-preserving noise reduction preserves streak artefacts, an empirical streak reduction (SR) technique is presented in this work. The SR method exploits spatial and temporal information in the form of total variation and time-curve analysis to detect and remove streaks. The novel approach is evaluated in a numerical brain phantom and a patient study. An improved noise and artefact reduction compared to existing post-processing methods and faster computation speed compared to an algebraic reconstruction method are achieved.

  6. Bioprospecting for culturable actinobacteria with antimicrobial ...

    African Journals Online (AJOL)

    Purpose: To Isolate and characterize Actinobacteria with antimicrobial activity from Guaviare River (Colombia). Methods: Water and sediment samples were collected from Guaviare River. Direct plating, heat and CaCO3 methods were used to isolate Actinobacteria. Six bacterial strains were tested using T-Streak. method: ...

  7. Conductivity study of PEO–LiClO4 polymer electrolyte doped with ...

    Indian Academy of Sciences (India)

    Administrator

    bPre-Indian Administrative Services Training Institute, Nagpur 440 001, India. cDepartment of Physics, Govt. Vidarbha ... cles in the PEO–LiClO4 matrix changes the mechanical stabilities and the ionic conductivity of the ... ZnO nanoparticles increases, streak development increases on the smooth surface and severe ...

  8. Direct hole and delayed electron capture on a picosecond timescale by Eu2+ centers in CaGa2S4 monitored by synchroscan with horizontal blanking

    NARCIS (Netherlands)

    Louwers, D.J.; Takizawa, T.; Hidaka, C.; Van der Kolk, E.

    2012-01-01

    A Eu2+ concentration and temperature dependent energy transfer study from the host lattice to Eu2+ luminescence centers in Ca(1–x)EuxGa2S4 (x = 0.001 to 0.05) was performed with a special streak camera that combines the high timing resolution of a conventional synchroscan operation (<2 ps) with the

  9. Electro-Optical Multichannel Spectrometer for Transient Resonance Raman and Absorption Spectroscopy

    DEFF Research Database (Denmark)

    Hansen, Karina Benthin; Wilbrandt, Robert Walter; Pagsberg, Palle Bjørn

    1979-01-01

    An optical multichannel system is described, used for time‐dependent absorption measurements in the gas phase and the liquid phase and for resonance Raman spectroscopy of short‐lived transient species in the liquid phase in pulse radiolysis. It consists of either an image converter streak unit or...

  10. Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control

    NARCIS (Netherlands)

    Arango Isaza, Rafael E.; Diaz-Trujillo, Caucasella; Dhillon, Braham; Aerts, Andrea; Carlier, Jean; Crane, Charles F.; V. de Jong, Tristan; de Vries, Ineke; Dietrich, Robert; Farmer, Andrew D.; Fortes Fereira, Claudia; Garcia, Suzana; Guzman, Mauricio; Hamelin, Richard C.; Lindquist, Erika A.; Mehrabi, Rahim; Quiros, Olman; Schmutz, Jeremy; Shapiro, Harris; Reynolds, Elizabeth; Scalliet, Gabriel; Souza Manoel, Jr.; Stergiopoulos, Ioannis; Van der Lee, Theo A. J.; De Wit, Pierre J. G. M.; Zapater, Marie-Françoise; Zwiers, Lute-Harm; Grigoriev, Igor V.; Goodwin, Stephen B.; Kema, Gert H. J.

    2016-01-01

    Black Sigatoka or black leaf streak disease, caused by the ascomycete fungus Pseudocercospora fijiensis, inflicts huge costs on banana producers, due to crop losses and expenses for disease control. The global banana export trade relies on Cavendish clones that are highly susceptible to P.

  11. DES BANANIERS PLANTAIN

    African Journals Online (AJOL)

    AISA

    INTEGRATED CONTROL OF BLACK SIGATOKA ( BLACK STREAKS DISEASE ; MRN) IN PLANTAIN (Musa, AAB, cv. Orishele) UNDER DIFFERENT PLANTING DENSITIES. The study conducted at the Azaguié Experiment Station of CNRA in Southern Côte d'Ivoire. (4°05' W ; 5°38' N) aims at assessing the effects of ...

  12. Combating a Global Threat to a Clonal Crop

    NARCIS (Netherlands)

    Arango Isaza, Rafael E.; Diaz-Trujillo, Caucasella; Dhillon, Braham; Aerts, Andrea; Carlier, Jean; Crane, Charles F.; V. de Jong, Tristan; Vries, de Ineke; Dietrich, Robert; Farmer, Andrew D.; Fortes Fereira, Claudia; Garcia, Suzana; Guzman, Mauricio; Hamelin, Richard C.; Lindquist, Erika A.; Mehrabi, Rahim; Quiros, Olman; Schmutz, Jeremy; Shapiro, Harris; Reynolds, Elizabeth; Scalliet, Gabriel; Souza, Manoel; Stergiopoulos, Ioannis; Lee, van der Theo A.J.; Wit, de Pierre J.G.M.; Zapater, Marie Françoise; Zwiers, Lute Harm; Grigoriev, Igor V.; Goodwin, Stephen B.; Kema, Gert H.J.

    2016-01-01

    Black Sigatoka or black leaf streak disease, caused by the Dothideomycete fungus Pseudocercospora fijiensis (previously: Mycosphaerella fijiensis), is the most significant foliar disease of banana worldwide. Due to the lack of effective host resistance, management of this disease requires

  13. A Genetic Linkage Map of Mycosphaerella Fijiensis, using SSR and DArT Markers

    Science.gov (United States)

    Mycosphaerella fijiensis is the causal agent of black leaf streak or Black Sigatoka disease in bananas. This pathogen threatens global banana production as the main export Cavendish cultivars are highly susceptible. Previously a genetic linkage map was generated predominantly using anonymous AFLP ma...

  14. Browse Title Index

    African Journals Online (AJOL)

    Items 51 - 100 of 132 ... Vol 31, No 2 (2014), Genetic diversity of maize germplasm lines and implications for breeding Maize streak virus resistant hybrids, Abstract. Nothando Mafu ... Vol 33, No 3 (2016), Inheritance of resistance to Ug99 stem rust pathogen in selected barley lines, Abstract. Mercy N Wamalwa, Ruth Wanyera, ...

  15. Comparative Studies on the Biosurfactant Production Capacity of ...

    African Journals Online (AJOL)

    Windows User

    Abdulsalam et al: Comparative Studies on the Biosurfactant Production Capacity of ……………….. 104 and morphological characterizations carried out were: pigmentation on cetrimide agar and growth at 40C. A loopful of 24hrs broth culture of the isolate was streaked on fresh Cetrimide agar and incubated at 370C for ...

  16. Determination of the growth rate and volume of lipid produced by ...

    African Journals Online (AJOL)

    A Lipomyces strains was isolated from shear butter leaf (Vitellaria paradoxa) by placing the leaf sample in 10 ml of sterile distilled water containing 0.002 g of potassium dihydrogen phosphate and incubated for 3 days at 28oC. A drop of this was subsequently streaked nitrogen free medium. For determination of growth rate ...

  17. GLOBAL JOURNAL OF PURE AND APPLIED SCIENCES VOL 15, NO

    African Journals Online (AJOL)

    Ada

    staphylococcus epidermidis and streptococcus viridans obtained from the Microbiology Laboratory in the. Department of Microbiology, Cross River University of. Technology, Calabar, Nigeria, were separately used to inoculate the Petri-dishes. This was done by streaking the surface of the plates in a zigzag manner until the.

  18. African Crop Science Journal - Vol 20, No 2 (2012)

    African Journals Online (AJOL)

    ... organic compounds emitted by seedlings of seven African maize varieties when infested by adult Cicadulina storeyi China leafhopper vectors of maize streak virus. EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT. S Oluwafemi, MA Birkett, J Caulfield, JA Pickett, 117- ...

  19. (16) Adebayo and Menkir LAUTECH

    African Journals Online (AJOL)

    Adeyinka Odunsi

    2011-09-16

    Sep 16, 2011 ... production is used as food, 31% as feed, and ... attack maize in the zone are common rust .... under natural disease inoculation in the rainy seasons of 2011 and 2012 at Ikenne, southwest Nigeria. Source of. Variation. Df. Grain yield. (kg ha-1). Plant aspect. (1-5). Ear aspect. (1-5). Streak. (1-5). Rust. (1-5).

  20. Isolation and Identification of a Brevibacterium linens strain ...

    African Journals Online (AJOL)

    nitrophenol (PNP). Subsequent subcultures in agar, nutrient agar plates and agar slants by streaking led to isolation of pure colonies. The pure culture could degrade up to 300 mg/L PNP in presence of yeast extract. It was Gram positive rods, ...

  1. Evaluating the Wildfire Emission estimates in an Air Quality Simulation of the 2016 Southeastern United States Wildfires

    Science.gov (United States)

    Extreme drought occurred over the southern Appalachian region of the southeastern United States (SE U.S.) during the fall of 2016. Tuscaloosa and Birmingham recorded their longest streak of 71 and 61 days, respectively, with no measurable precipitation; and, Montgomery, Atlanta, ...

  2. Maximum entropy beam diagnostic tomography

    International Nuclear Information System (INIS)

    Mottershead, C.T.

    1985-01-01

    This paper reviews the formalism of maximum entropy beam diagnostic tomography as applied to the Fusion Materials Irradiation Test (FMIT) prototype accelerator. The same formalism has also been used with streak camera data to produce an ultrahigh speed movie of the beam profile of the Experimental Test Accelerator (ETA) at Livermore. 11 refs., 4 figs

  3. Different patterns of gene expression in rice varieties undergoing a ...

    African Journals Online (AJOL)

    Different patterns of gene expression in rice varieties undergoing a resistant or susceptible interaction with the bacterial leaf streak pathogen. ... rice line and its wild type were distinctly different: 92.00% of the DRGs were up-regulated in inoculated 9804-Rxo1 and 48.22% of the DRGs were sorted as defense-related genes.

  4. Microbial Population of Staphyloccous aureus from Inanimate ...

    African Journals Online (AJOL)

    ADOWIE PERE

    patients on the hands of the hospital staff, and hand washing is widely recognized as the single most important factor for prevention of colonization and infection (Boyce ... pick distinct colonies from Mannitol Salt Agar plates and streaked on Nutrient Agar plates. Plates were incubated at 37oC for 24 hours to observe for pure.

  5. What Is Macular Edema?

    Medline Plus

    Full Text Available ... diabetes—particularly if it is left untreated. Next What Causes Macular Edema? Related Ask an Ophthalmologist Answers Would a macular wrinkle cause black streaks in my vision? Oct 05, 2017 When will I be able to see after vitrectomy surgery for a macular hole? Jan 24, 2016 Can Prolensa drops help a ...

  6. What Is Macular Edema?

    Science.gov (United States)

    ... diabetes—particularly if it is left untreated. Next What Causes Macular Edema? Related Ask an Ophthalmologist Answers Would a macular wrinkle cause black streaks in my vision? Oct 05, 2017 When will I be able to see after vitrectomy surgery for a macular hole? Jan 24, 2016 Can Prolensa drops help a ...

  7. Nuclear reactor

    International Nuclear Information System (INIS)

    Mysels, K.J.; Shenoy, A.S.

    1976-01-01

    A nuclear reactor is described in which the core consists of a number of fuel regions through each of which regulated coolant flows. The coolant from neighbouring fuel regions is combined in a manner which results in an averaging of the coolant temperature at the outlet of the core. By this method the presence of hot streaks in the reactor is reduced. (UK)

  8. a comparative study of the effects of colostrum and gentamicin

    African Journals Online (AJOL)

    LIVINGSTON

    The prevention of ophthalmia neonatorum ... streaked and sub-cultured for another 24 hours at 37 C. The agar plates without growth were further incubated for 24 hours ... Staphylococcus aureus. Streptococcus spp. Escherichia coli. Neisseria gonorrhea. Staphylococcus aureus. Streptococcus spp. Staphylococcus aureus.

  9. Journal of Biosciences | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Clipboard: Continuous evolution of laboratory strains of bacteria and yeast ... Avoiding acidic region streaking in two-dimensional gel electrophoresis: Case study with two bacterial whole cell protein extracts ... Limnology and cyanobacterial diversity of high altitude lakes of Lahaul-Spiti in Himachal Pradesh, India.

  10. 78 FR 20074 - Endangered and Threatened Wildlife and Plants; Listing and Designation of Critical Habitat for...

    Science.gov (United States)

    2013-04-03

    ... Checkerspot Butterfly, Streaked Horned Lark, and Four Subspecies of Mazama Pocket Gopher AGENCY: Fish and... to list four subspecies of Mazama pocket gopher (Olympia, Tenino, Yelm, and Roy Prairie) and to... for the Mazama pocket gophers; from the Washington Fish and Wildlife Office's Web site ( http://www...

  11. CONTINUING THE DEVELOPMENT OF A 100 FEMTOSECOND X-RAY DETECTOR

    International Nuclear Information System (INIS)

    Zenghu Chang

    2005-01-01

    The detector is an x-ray streak camera running in accumulation mode for time resolved x-ray studies at the existing third generation synchrotron facilities and will also be used for the development and applications of the fourth generation x-ray sources. We have made significant progress on both the detector development and its applications at Synchrotron facilities

  12. Inactivation of enteropathogenic E. coli by solar disinfection (SODIS) under simulated sunlight conditions

    CSIR Research Space (South Africa)

    Ubomba-Jaswa, Eunice

    2008-12-01

    Full Text Available of maintaining the water temperature at a constant maximum as was done for inactivation studies of other organisms. 2. Methods 2.1. Bacterial Growth EPEC E. coli O157 (ATCC 23631) and E.coli K-12 were obtained from frozen stocks and streaked...

  13. Untitled

    Indian Academy of Sciences (India)

    Rai V N, Shukla M, Khardekar R K 1994a A transistorized Marx bank circuit providing. Sub-nanosecond high voltage pulses. Meas. Sci. Tech. 5: 447-449. Rai WN, Shukla M, Pant H. C. Bhawalkar D D 1994b Development of a picosecond optical streak camera and observation of self sustained oscillation in GaAs laser diode ...

  14. Heterochromia of the Hair and Eyelashes with Blaschkoid Dyspigmentation.

    Science.gov (United States)

    Dumitrascu, Catalina I; Hoss, Elika; Hogeling, Marcia

    2016-01-01

    Heterochromia of the hair involves the presence of two distinctive colors of scalp hair in one individual. We report the case of a 4-year-old girl with reddish streaks of scalp hair, heterochromia of the eyelashes, and cutaneous hypopigmentation following the lines of Blaschko. © 2016 Wiley Periodicals, Inc.

  15. Fungi associated with maize seed discolouration and abnormalities ...

    African Journals Online (AJOL)

    The percentage incidence of F. moniliforme was significantly higher on seeds which showed white streaks, purple/pink discolouration, discoloured germ end and wrinkling than that of any other fungus. Cephalosporium acremonium and Nigrospora oryzae were also associated with purple/pink discolouration while ...

  16. 3D Prior Image Constrained Projection Completion for X-ray CT Metal Artifact Reduction

    NARCIS (Netherlands)

    Mehranian, Abolfazl; Ay, Mohammad Reza; Rahmim, Arman; Zaidi, Habib

    2013-01-01

    The presence of metallic implants in the body of patients undergoing X-ray computed tomography (CT) examinations often results insevere streaking artifacts that degrade image quality. In this work, we propose a new metal artifact reduction (MAR) algorithm for 2D fan-beam and 3D cone-beam CT based on

  17. Transitional–turbulent spots and turbulent–turbulent spots in boundary layers

    Science.gov (United States)

    Wu, Xiaohua; Moin, Parviz; Wallace, James M.; Skarda, Jinhie; Lozano-Durán, Adrián; Hickey, Jean-Pierre

    2017-01-01

    Two observations drawn from a thoroughly validated direct numerical simulation of the canonical spatially developing, zero-pressure gradient, smooth, flat-plate boundary layer are presented here. The first is that, for bypass transition in the narrow sense defined herein, we found that the transitional–turbulent spot inception mechanism is analogous to the secondary instability of boundary-layer natural transition, namely a spanwise vortex filament becomes a Λ vortex and then, a hairpin packet. Long streak meandering does occur but usually when a streak is infected by a nearby existing transitional–turbulent spot. Streak waviness and breakdown are, therefore, not the mechanisms for the inception of transitional–turbulent spots found here. Rather, they only facilitate the growth and spreading of existing transitional–turbulent spots. The second observation is the discovery, in the inner layer of the developed turbulent boundary layer, of what we call turbulent–turbulent spots. These turbulent–turbulent spots are dense concentrations of small-scale vortices with high swirling strength originating from hairpin packets. Although structurally quite similar to the transitional–turbulent spots, these turbulent–turbulent spots are generated locally in the fully turbulent environment, and they are persistent with a systematic variation of detection threshold level. They exert indentation, segmentation, and termination on the viscous sublayer streaks, and they coincide with local concentrations of high levels of Reynolds shear stress, enstrophy, and temperature fluctuations. The sublayer streaks seem to be passive and are often simply the rims of the indentation pockets arising from the turbulent–turbulent spots. PMID:28630304

  18. Transitional-turbulent spots and turbulent-turbulent spots in boundary layers.

    Science.gov (United States)

    Wu, Xiaohua; Moin, Parviz; Wallace, James M; Skarda, Jinhie; Lozano-Durán, Adrián; Hickey, Jean-Pierre

    2017-07-03

    Two observations drawn from a thoroughly validated direct numerical simulation of the canonical spatially developing, zero-pressure gradient, smooth, flat-plate boundary layer are presented here. The first is that, for bypass transition in the narrow sense defined herein, we found that the transitional-turbulent spot inception mechanism is analogous to the secondary instability of boundary-layer natural transition, namely a spanwise vortex filament becomes a [Formula: see text] vortex and then, a hairpin packet. Long streak meandering does occur but usually when a streak is infected by a nearby existing transitional-turbulent spot. Streak waviness and breakdown are, therefore, not the mechanisms for the inception of transitional-turbulent spots found here. Rather, they only facilitate the growth and spreading of existing transitional-turbulent spots. The second observation is the discovery, in the inner layer of the developed turbulent boundary layer, of what we call turbulent-turbulent spots. These turbulent-turbulent spots are dense concentrations of small-scale vortices with high swirling strength originating from hairpin packets. Although structurally quite similar to the transitional-turbulent spots, these turbulent-turbulent spots are generated locally in the fully turbulent environment, and they are persistent with a systematic variation of detection threshold level. They exert indentation, segmentation, and termination on the viscous sublayer streaks, and they coincide with local concentrations of high levels of Reynolds shear stress, enstrophy, and temperature fluctuations. The sublayer streaks seem to be passive and are often simply the rims of the indentation pockets arising from the turbulent-turbulent spots.

  19. A high spatio-temporal resolution optical pyrometer at the ORION laser facility.

    Science.gov (United States)

    Floyd, Emma; Gumbrell, Edward T; Fyrth, Jim; Luis, James D; Skidmore, Jonathan W; Patankar, Siddharth; Giltrap, Samuel; Smith, Roland

    2016-11-01

    A streaked pyrometer has been designed to measure the temperature of ≈100 μm diameter heated targets in the warm dense matter region. The diagnostic has picosecond time resolution. Spatial resolution is limited by the streak camera to 4 μm in one dimension; the imaging system has superior resolution of 1 μm. High light collection efficiency means that the diagnostic can transmit a measurable quantity of thermal emission at temperatures as low as 1 eV to the detector. This is achieved through the use of an f/1.4 objective, and a minimum number of reflecting and refracting surfaces to relay the image over 8 m with no vignetting over a 0.4 mm field of view with 12.5× magnification. All the system optics are highly corrected, to allow imaging with minimal aberrations over a broad spectral range. The detector is a highly sensitive Axis Photonique streak camera with a P820PSU streak tube. For the first time, two of these cameras have been absolutely calibrated at 1 ns and 2 ns sweep speeds under full operational conditions and over 8 spectral bands between 425 nm and 650 nm using a high-stability picosecond white light source. Over this range the cameras had a response which varied between 47 ± 8 and 14 ± 4 photons/count. The calibration of the optical imaging system makes absolute temperature measurements possible. Color temperature measurements are also possible due to the wide spectral range over which the system is calibrated; two different spectral bands can be imaged onto different parts of the photocathode of the same streak camera.

  20. Transitional-turbulent spots and turbulent-turbulent spots in boundary layers

    Science.gov (United States)

    Wu, Xiaohua; Moin, Parviz; Wallace, James M.; Skarda, Jinhie; Lozano-Durán, Adrián; Hickey, Jean-Pierre

    2017-07-01

    Two observations drawn from a thoroughly validated direct numerical simulation of the canonical spatially developing, zero-pressure gradient, smooth, flat-plate boundary layer are presented here. The first is that, for bypass transition in the narrow sense defined herein, we found that the transitional-turbulent spot inception mechanism is analogous to the secondary instability of boundary-layer natural transition, namely a spanwise vortex filament becomes a ΛΛ vortex and then, a hairpin packet. Long streak meandering does occur but usually when a streak is infected by a nearby existing transitional-turbulent spot. Streak waviness and breakdown are, therefore, not the mechanisms for the inception of transitional-turbulent spots found here. Rather, they only facilitate the growth and spreading of existing transitional-turbulent spots. The second observation is the discovery, in the inner layer of the developed turbulent boundary layer, of what we call turbulent-turbulent spots. These turbulent-turbulent spots are dense concentrations of small-scale vortices with high swirling strength originating from hairpin packets. Although structurally quite similar to the transitional-turbulent spots, these turbulent-turbulent spots are generated locally in the fully turbulent environment, and they are persistent with a systematic variation of detection threshold level. They exert indentation, segmentation, and termination on the viscous sublayer streaks, and they coincide with local concentrations of high levels of Reynolds shear stress, enstrophy, and temperature fluctuations. The sublayer streaks seem to be passive and are often simply the rims of the indentation pockets arising from the turbulent-turbulent spots.