Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes.

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Andaine Seguin-Orlando

Full Text Available Ancient DNA extracts consist of a mixture of endogenous molecules and contaminant DNA templates, often originating from environmental microbes. These two populations of templates exhibit different chemical characteristics, with the former showing depurination and cytosine deamination by-products, resulting from post-mortem DNA damage. Such chemical modifications can interfere with the molecular tools used for building second-generation DNA libraries, and limit our ability to fully characterize the true complexity of ancient DNA extracts. In this study, we first use fresh DNA extracts to demonstrate that library preparation based on adapter ligation at AT-overhangs are biased against DNA templates starting with thymine residues, contrarily to blunt-end adapter ligation. We observe the same bias on fresh DNA extracts sheared on Bioruptor, Covaris and nebulizers. This contradicts previous reports suggesting that this bias could originate from the methods used for shearing DNA. This also suggests that AT-overhang adapter ligation efficiency is affected in a sequence-dependent manner and results in an uneven representation of different genomic contexts. We then show how this bias could affect the base composition of ancient DNA libraries prepared following AT-overhang ligation, mainly by limiting the ability to ligate DNA templates starting with thymines and therefore deaminated cytosines. This results in particular nucleotide misincorporation damage patterns, deviating from the signature generally expected for authenticating ancient sequence data. Consequently, we show that models adequate for estimating post-mortem DNA damage levels must be robust to the molecular tools used for building ancient DNA libraries.

Ancient and modern environmental DNA

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Pedersen, Mikkel Winther; Overballe-Petersen, Søren; Ermini, Luca; Sarkissian, Clio Der; Haile, James; Hellstrom, Micaela; Spens, Johan; Thomsen, Philip Francis; Bohmann, Kristine; Cappellini, Enrico; Schnell, Ida Bærholm; Wales, Nathan A.; Carøe, Christian; Campos, Paula F.; Schmidt, Astrid M. Z.; Gilbert, M. Thomas P.; Hansen, Anders J.; Orlando, Ludovic; Willerslev, Eske

2015-01-01

DNA obtained from environmental samples such as sediments, ice or water (environmental DNA, eDNA), represents an important source of information on past and present biodiversity. It has revealed an ancient forest in Greenland, extended by several thousand years the survival dates for mainland woolly mammoth in Alaska, and pushed back the dates for spruce survival in Scandinavian ice-free refugia during the last glaciation. More recently, eDNA was used to uncover the past 50 000 years of vegetation history in the Arctic, revealing massive vegetation turnover at the Pleistocene/Holocene transition, with implications for the extinction of megafauna. Furthermore, eDNA can reflect the biodiversity of extant flora and fauna, both qualitatively and quantitatively, allowing detection of rare species. As such, trace studies of plant and vertebrate DNA in the environment have revolutionized our knowledge of biogeography. However, the approach remains marred by biases related to DNA behaviour in environmental settings, incomplete reference databases and false positive results due to contamination. We provide a review of the field. PMID:25487334

Ancient DNA and the rewriting of human history: be sparing with Occam's razor.

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Haber, Marc; Mezzavilla, Massimo; Xue, Yali; Tyler-Smith, Chris

2016-01-11

Ancient DNA research is revealing a human history far more complex than that inferred from parsimonious models based on modern DNA. Here, we review some of the key events in the peopling of the world in the light of the findings of work on ancient DNA.

Pros and cons of methylation-based enrichment methods for ancient DNA

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Seguin-Orlando, Andaine; Gamba, Cristina; Sarkissian, Clio Der; Ermini, Luca; Louvel, Guillaume; Boulygina, Eugenia; Sokolov, Alexey; Nedoluzhko, Artem; Lorenzen, Eline D.; Lopez, Patricio; McDonald, H. Gregory; Scott, Eric; Tikhonov, Alexei; Stafford,, Thomas W.; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A. S.; Shapiro, Beth; Willerslev, Eske; Prokhortchouk, Egor; Orlando, Ludovic

2015-01-01

The recent discovery that DNA methylation survives in fossil material provides an opportunity for novel molecular approaches in palaeogenomics. Here, we apply to ancient DNA extracts the probe-independent Methylated Binding Domains (MBD)-based enrichment method, which targets DNA molecules containing methylated CpGs. Using remains of a Palaeo-Eskimo Saqqaq individual, woolly mammoths, polar bears and two equine species, we confirm that DNA methylation survives in a variety of tissues, environmental contexts and over a large temporal range (4,000 to over 45,000 years before present). MBD enrichment, however, appears principally biased towards the recovery of CpG-rich and long DNA templates and is limited by the fast post-mortem cytosine deamination rates of methylated epialleles. This method, thus, appears only appropriate for the analysis of ancient methylomes from very well preserved samples, where both DNA fragmentation and deamination have been limited. This work represents an essential step toward the characterization of ancient methylation signatures, which will help understanding the role of epigenetic changes in past environmental and cultural transitions. PMID:26134828

The study of human Y chromosome variation through ancient DNA.

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Kivisild, Toomas

2017-05-01

High throughput sequencing methods have completely transformed the study of human Y chromosome variation by offering a genome-scale view on genetic variation retrieved from ancient human remains in context of a growing number of high coverage whole Y chromosome sequence data from living populations from across the world. The ancient Y chromosome sequences are providing us the first exciting glimpses into the past variation of male-specific compartment of the genome and the opportunity to evaluate models based on previously made inferences from patterns of genetic variation in living populations. Analyses of the ancient Y chromosome sequences are challenging not only because of issues generally related to ancient DNA work, such as DNA damage-induced mutations and low content of endogenous DNA in most human remains, but also because of specific properties of the Y chromosome, such as its highly repetitive nature and high homology with the X chromosome. Shotgun sequencing of uniquely mapping regions of the Y chromosomes to sufficiently high coverage is still challenging and costly in poorly preserved samples. To increase the coverage of specific target SNPs capture-based methods have been developed and used in recent years to generate Y chromosome sequence data from hundreds of prehistoric skeletal remains. Besides the prospects of testing directly as how much genetic change in a given time period has accompanied changes in material culture the sequencing of ancient Y chromosomes allows us also to better understand the rate at which mutations accumulate and get fixed over time. This review considers genome-scale evidence on ancient Y chromosome diversity that has recently started to accumulate in geographic areas favourable to DNA preservation. More specifically the review focuses on examples of regional continuity and change of the Y chromosome haplogroups in North Eurasia and in the New World.

Experimental conditions improving in-solution target enrichment for ancient DNA

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Cruz-Dávalos, Diana I.; Llamas, Bastien; Gaunitz, Charleen

2017-01-01

High-throughput sequencing has dramatically fostered ancient DNA research in recent years. Shotgun sequencing, however, does not necessarily appear as the best-suited approach due to the extensive contamination of samples with exogenous environmental microbial DNA. DNA capture-enrichment methods ...

Using Ancient DNA to Understand Evolutionary and Ecological Processes

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Orlando, Ludovic Antoine Alexandre; Cooper, Alan

2014-01-01

Ancient DNA provides a unique means to record genetic change through time and directly observe evolutionary and ecological processes. Although mostly based on mitochondrial DNA, the increasing availability of genomic sequences is leading to unprecedented levels of resolution. Temporal studies of ...

Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects.

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Yoshida, Kentaro; Sasaki, Eriko; Kamoun, Sophien

2015-01-01

The application of DNA sequencing technology to the study of ancient DNA has enabled the reconstruction of past epidemics from genomes of historically important plant-associated microbes. Recently, the genome sequences of the potato late blight pathogen Phytophthora infestans were analyzed from 19th century herbarium specimens. These herbarium samples originated from infected potatoes collected during and after the Irish potato famine. Herbaria have therefore great potential to help elucidate past epidemics of crops, date the emergence of pathogens, and inform about past pathogen population dynamics. DNA preservation in herbarium samples was unexpectedly good, raising the possibility of a whole new research area in plant and microbial genomics. However, the recovered DNA can be extremely fragmented resulting in specific challenges in reconstructing genome sequences. Here we review some of the challenges in computational analyses of ancient DNA from herbarium samples. We also applied the recently developed linkage method to haplotype reconstruction of diploid or polyploid genomes from fragmented ancient DNA.

Statistical guidelines for detecting past population shifts using ancient DNA

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Mourier, Tobias; Ho, Simon Y. W.; Gilbert, Tom

2012-01-01

Populations carry a genetic signal of their demographic past, providing an opportunity for investigating the processes that shaped their evolution. Our ability to infer population histories can be enhanced by including ancient DNA data. Using serial-coalescent simulations and a range of both...... quantitative and temporal sampling schemes, we test the power of ancient mitochondrial sequences and nuclear single-nucleotide polymorphisms (SNPs) to detect past population bottlenecks. Within our simulated framework, mitochondrial sequences have only limited power to detect subtle bottlenecks and/or fast...... results provide useful guidelines for scaling sampling schemes and for optimizing our ability to infer past population dynamics. In addition, our results suggest that many ancient DNA studies may face power issues in detecting moderate demographic collapses and/or highly dynamic demographic shifts when...

Ancient DNA (aDNA): What is it? Why is it important?- Fact Sheet

OpenAIRE

Alexa Walker; George Nicholas; Daryl Pullman; Alan Goodman; Bioarchaeology and Genetics Working Group

2014-01-01

As genetic research is increasingly applied to new areas of study, including in archaeological and heritage contexts, a range of questions arise concerning the social, ethical, legal, and political implications of ancient DNA. This fact sheet explains the nature and challenges of aDNA research, and why information from it is important and relevant to people today.  

Ancient bacteria show evidence of DNA repair

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Johnson, Sarah Stewart; Hebsgaard, Martin B; Christensen, Torben R

2007-01-01

-term survival of bacteria sealed in frozen conditions for up to one million years. Our results show evidence of bacterial survival in samples up to half a million years in age, making this the oldest independently authenticated DNA to date obtained from viable cells. Additionally, we find strong evidence...... geological timescales. There has been no direct evidence in ancient microbes for the most likely mechanism, active DNA repair, or for the metabolic activity necessary to sustain it. In this paper, we couple PCR and enzymatic treatment of DNA with direct respiration measurements to investigate long...... that this long-term survival is closely tied to cellular metabolic activity and DNA repair that over time proves to be superior to dormancy as a mechanism in sustaining bacteria viability....

Combining bleach and mild predigestion improves ancient DNA recovery from bones

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Boessenkool, Sanne; Hanghøj, Kristian Ebbesen; Nistelberger, Heidi M.

2017-01-01

library characteristics, such as DNA damage profiles or the composition of microbial communities, are little affected by the pre-extraction protocols. Application of the combined protocol presented in this study will facilitate the genetic analysis of an increasing number of ancient remains...... aimed to improve ancient DNA recovery before library amplification have recently been developed. Here, we test the effects of combining two of such protocols, a bleach wash and a predigestion step, on 12 bone samples of Atlantic cod and domestic horse aged 750-1350 cal. years before present. Using high...

Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments

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Hansen, Anders Johannes; Mitchell, D.L.; Wiuf, C.

2006-01-01

, and freely exposed sugar, phosphate, and hydroxyl groups. Intriguingly, interstrand crosslinks were found to accumulate about hundred times faster than single stranded breaks, suggesting that crosslinking rather than depurination is the primary limiting factor for ancient DNA amplification under frozen...... conditions. The results question the reliability of the commonly used models relying on depurination kinetics for predicting the long-term survival of DNA under permafrost conditions and suggest that new strategies for repair of ancient DNA must be considered if the yield of amplifiable DNA from permafrost...

A new model for ancient DNA decay based on paleogenomic meta-analysis.

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Kistler, Logan; Ware, Roselyn; Smith, Oliver; Collins, Matthew; Allaby, Robin G

2017-06-20

The persistence of DNA over archaeological and paleontological timescales in diverse environments has led to a revolutionary body of paleogenomic research, yet the dynamics of DNA degradation are still poorly understood. We analyzed 185 paleogenomic datasets and compared DNA survival with environmental variables and sample ages. We find cytosine deamination follows a conventional thermal age model, but we find no correlation between DNA fragmentation and sample age over the timespans analyzed, even when controlling for environmental variables. We propose a model for ancient DNA decay wherein fragmentation rapidly reaches a threshold, then subsequently slows. The observed loss of DNA over time may be due to a bulk diffusion process in many cases, highlighting the importance of tissues and environments creating effectively closed systems for DNA preservation. This model of DNA degradation is largely based on mammal bone samples due to published genomic dataset availability. Continued refinement to the model to reflect diverse biological systems and tissue types will further improve our understanding of ancient DNA breakdown dynamics. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

DNA FROM ANCIENT STONE TOOLS AND BONES EXCAVATED AT BUGAS-HOLDING, WYOMING

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Traces of DNA may preserve on ancient stone tools. We examined 24 chipped stone artifacts recovered from the Bugas-Holding site in northwestern Wyoming for the presence of DNA residues, and we compared DNA preservation in bones and stone tools from the same stratigraphic context...

Retroviral DNA Sequences as a Means for Determining Ancient Diets.

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Jessica I Rivera-Perez

Full Text Available For ages, specialists from varying fields have studied the diets of the primeval inhabitants of our planet, detecting diet remains in archaeological specimens using a range of morphological and biochemical methods. As of recent, metagenomic ancient DNA studies have allowed for the comparison of the fecal and gut microbiomes associated to archaeological specimens from various regions of the world; however the complex dynamics represented in those microbial communities still remain unclear. Theoretically, similar to eukaryote DNA the presence of genes from key microbes or enzymes, as well as the presence of DNA from viruses specific to key organisms, may suggest the ingestion of specific diet components. In this study we demonstrate that ancient virus DNA obtained from coprolites also provides information reconstructing the host's diet, as inferred from sequences obtained from pre-Columbian coprolites. This depicts a novel and reliable approach to determine new components as well as validate the previously suggested diets of extinct cultures and animals. Furthermore, to our knowledge this represents the first description of the eukaryotic viral diversity found in paleofaeces belonging to pre-Columbian cultures.

More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA

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Malmström, Helena; Svensson, Emma M; Gilbert, M Thomas P

2007-01-01

concerning the authenticity of such data. Although several methods have been developed to the purpose of authenticating ancient DNA (aDNA) results, while they are useful in faunal research, most of the methods have proven complicated to apply to ancient human DNA. Here, we investigate in detail...... the reliability of one of the proposed criteria, that of appropriate molecular behavior. Using real-time polymerase chain reaction (PCR) and pyrosequencing, we have quantified the relative levels of authentic aDNA and contaminant human DNA sequences recovered from archaeological dog and cattle remains. In doing...

Early history of European domestic cattle as revealed by ancient DNA.

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Bollongino, R; Edwards, C J; Alt, K W; Burger, J; Bradley, D G

2006-03-22

We present an extensive ancient DNA analysis of mainly Neolithic cattle bones sampled from archaeological sites along the route of Neolithic expansion, from Turkey to North-Central Europe and Britain. We place this first reasonable population sample of Neolithic cattle mitochondrial DNA sequence diversity in context to illustrate the continuity of haplotype variation patterns from the first European domestic cattle to the present. Interestingly, the dominant Central European pattern, a starburst phylogeny around the modal sequence, T3, has a Neolithic origin, and the reduced diversity within this cluster in the ancient samples accords with their shorter history of post-domestic accumulation of mutation.

Comparison of Suitability of the Most Common Ancient DNA Quantification Methods.

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Brzobohatá, Kristýna; Drozdová, Eva; Smutný, Jiří; Zeman, Tomáš; Beňuš, Radoslav

2017-04-01

Ancient DNA (aDNA) extracted from historical bones is damaged and fragmented into short segments, present in low quantity, and usually copurified with microbial DNA. A wide range of DNA quantification methods are available. The aim of this study was to compare the five most common DNA quantification methods for aDNA. Quantification methods were tested on DNA extracted from skeletal material originating from an early medieval burial site. The tested methods included ultraviolet (UV) absorbance, real-time quantitative polymerase chain reaction (qPCR) based on SYBR ® green detection, real-time qPCR based on a forensic kit, quantification via fluorescent dyes bonded to DNA, and fragmentary analysis. Differences between groups were tested using a paired t-test. Methods that measure total DNA present in the sample (NanoDrop ™ UV spectrophotometer and Qubit ® fluorometer) showed the highest concentrations. Methods based on real-time qPCR underestimated the quantity of aDNA. The most accurate method of aDNA quantification was fragmentary analysis, which also allows DNA quantification of the desired length and is not affected by PCR inhibitors. Methods based on the quantification of the total amount of DNA in samples are unsuitable for ancient samples as they overestimate the amount of DNA presumably due to the presence of microbial DNA. Real-time qPCR methods give undervalued results due to DNA damage and the presence of PCR inhibitors. DNA quantification methods based on fragment analysis show not only the quantity of DNA but also fragment length.

Use of RAPD and PCR double amplification in the study of ancient DNA

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F. Balzano

2011-01-01

Full Text Available This project analysed the DNA extracted from bones of ancient sheep which have been brought to light in Sardinian different archaeological sites. In order to better analyse this highly fragmented DNA, a double amplification technique was chosen. The first approach consisted of RAPD-PCR abd the second one in classic PCR. The RAPD-PCR amplified random fragments and allowed the production of numerous amplicons. The products of RAPD amplification have been amplified, more specifically, by the second PCR using primers for a sequence of 176 bp of mitochondrial D-loop region. These DNA fragments have been sequenced and the sequence analysis has confirmed that it belonged to Ovis aries. Consequently, this provedure can be considered a valid tool to perform amplification of degraded DNA, such as ancient DNA.

Ancient DNA from nomads in 2500-year-old archeological sites of Pengyang, China.

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Zhao, Yong-Bin; Li, Hong-Jie; Cai, Da-Wei; Li, Chun-Xiang; Zhang, Quan-Chao; Zhu, Hong; Zhou, Hui

2010-04-01

Six human remains (dating approximately 2500 years ago) were excavated from Pengyang, China, an area occupied by both ancient nomadic and farming people. The funerary objects found with these remains suggested they were nomads. To further confirm their ancestry, we analyzed both the maternal lineages and paternal lineages of the ancient DNA. From the mitochondrial DNA, six haplotypes were identified as three haplogroups: C, D4 and M10. The haplotype-sharing populations and phylogenetic analyses revealed that these individuals were closely associated with the ancient Xiongnu and modern northern Asians. Single-nucleotide polymorphism analysis of Y chromosomes from four male samples that were typed as haplogroup Q indicated that these people had originated in Siberia. These results show that these ancient people from Pengyang present a close genetic affinity to nomadic people, indicating that northern nomads had reached the Central Plain area of China nearly 2500 years ago.

The effect of ancient DNA damage on inferences of demographic histories

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Axelsson, Erik; Willerslev, Eske; Gilbert, Marcus Thomas Pius

2008-01-01

The field of ancient DNA (aDNA) is casting new light on many evolutionary questions. However, problems associated with the postmortem instability of DNA may complicate the interpretation of aDNA data. For example, in population genetic studies, the inclusion of damaged DNA may inflate estimates o...... for a change in effective population size in this data set vanishes once the effects of putative damage are removed. Our results suggest that population genetic analyses of aDNA sequences, which do not accurately account for damage, should be interpreted with great caution....

Comparing Ancient DNA Preservation in Petrous Bone and Tooth Cementum.

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Henrik B Hansen

Full Text Available Large-scale genomic analyses of ancient human populations have become feasible partly due to refined sampling methods. The inner part of petrous bones and the cementum layer in teeth roots are currently recognized as the best substrates for such research. We present a comparative analysis of DNA preservation in these two substrates obtained from the same human skulls, across a range of different ages and preservation environments. Both substrates display significantly higher endogenous DNA content (average of 16.4% and 40.0% for teeth and petrous bones, respectively than parietal skull bone (average of 2.2%. Despite sample-to-sample variation, petrous bone overall performs better than tooth cementum (p = 0.001. This difference, however, is driven largely by a cluster of viking skeletons from one particular locality, showing relatively poor molecular tooth preservation (<10% endogenous DNA. In the remaining skeletons there is no systematic difference between the two substrates. A crude preservation (good/bad applied to each sample prior to DNA-extraction predicted the above/below 10% endogenous DNA threshold in 80% of the cases. Interestingly, we observe signficantly higher levels of cytosine to thymine deamination damage and lower proportions of mitochondrial/nuclear DNA in petrous bone compared to tooth cementum. Lastly, we show that petrous bones from ancient cremated individuals contain no measurable levels of authentic human DNA. Based on these findings we discuss the pros and cons of sampling the different elements.

Fact Sheet- Ancient DNA: What is it? Why is it Important?

OpenAIRE

Alexa Walker; George Nicholas; Daryl Pullman; Alan Goodman; Bioarchaeology and Genetics Working Group

2016-01-01

As genetic research is increasingly applied to new areas of study, including in archaeological and heritage contexts, a range of questions arise concerning the social, ethical, legal, and political implications of ancient DNA. This fact sheet explains the nature and challenges of aDNA research, and why information from it is important and relevant to people today. 

Natural transformation of bacteria by fragmented, damaged and ancient DNA

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Overballe-Petersen, Søren

with fullgenome comparisons that the process has general relevance in extant bacteria. Our findings reveal that the large environmental reservoir of short and damaged DNA retains capacity for natural transformation, even after thousands of years. This describes for the first time a process by which cells can...... transfer playing an important role early in the evolution of life. The published article explains the chemical structure behind an observed degradation difference between the two purine-nucleotides guanosine and adenosine in ancient DNA. We also point at new uses for high-through-put DNA sequencing...

Founding Amerindian mitochondrial DNA lineages in ancient Maya from Xcaret, Quintana Roo.

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González-Oliver, A; Márquez-Morfín, L; Jiménez, J C; Torre-Blanco, A

2001-11-01

Ancient DNA from the bone remains of 25 out of 28 pre-Columbian individuals from the Late Classic-Postclassic Maya site of Xcaret, Quintana Roo, was recovered, and mitochondrial DNA (mtDNA) was amplified by using the polymerase chain reaction. The presence of the four founding Amerindian mtDNA lineages was investigated by restriction analysis and by direct sequencing in selected individuals. The mtDNA lineages A, B, and C were found in this population. Eighty-four percent of the individuals were lineage A, whereas lineages B and C were present at low frequencies, 4% and 8%, respectively. Lineage D was absent from our sample. One individual did not possess any of the four lineages. Six skeletons out of 7 dated from the Late Classic period were haplotype A, whereas 11 skeletons out of 16 dated from the Postclassic period were also haplotype A. The distribution of mtDNA lineages in the Xcaret population contrasts sharply with that found in ancient Maya from Copán, which lack lineages A and B. On the other hand, our results resemble more closely the frequencies of mtDNA lineages found in contemporary Maya from the Yucatán Peninsula and in other Native American contemporary populations of Mesoamerican origin. Copyright 2001 Wiley-Liss, Inc.

High-Throughput DNA sequencing of ancient wood.

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Wagner, Stefanie; Lagane, Frédéric; Seguin-Orlando, Andaine; Schubert, Mikkel; Leroy, Thibault; Guichoux, Erwan; Chancerel, Emilie; Bech-Hebelstrup, Inger; Bernard, Vincent; Billard, Cyrille; Billaud, Yves; Bolliger, Matthias; Croutsch, Christophe; Čufar, Katarina; Eynaud, Frédérique; Heussner, Karl Uwe; Köninger, Joachim; Langenegger, Fabien; Leroy, Frédéric; Lima, Christine; Martinelli, Nicoletta; Momber, Garry; Billamboz, André; Nelle, Oliver; Palomo, Antoni; Piqué, Raquel; Ramstein, Marianne; Schweichel, Roswitha; Stäuble, Harald; Tegel, Willy; Terradas, Xavier; Verdin, Florence; Plomion, Christophe; Kremer, Antoine; Orlando, Ludovic

2018-03-01

Reconstructing the colonization and demographic dynamics that gave rise to extant forests is essential to forecasts of forest responses to environmental changes. Classical approaches to map how population of trees changed through space and time largely rely on pollen distribution patterns, with only a limited number of studies exploiting DNA molecules preserved in wooden tree archaeological and subfossil remains. Here, we advance such analyses by applying high-throughput (HTS) DNA sequencing to wood archaeological and subfossil material for the first time, using a comprehensive sample of 167 European white oak waterlogged remains spanning a large temporal (from 550 to 9,800 years) and geographical range across Europe. The successful characterization of the endogenous DNA and exogenous microbial DNA of 140 (~83%) samples helped the identification of environmental conditions favouring long-term DNA preservation in wood remains, and started to unveil the first trends in the DNA decay process in wood material. Additionally, the maternally inherited chloroplast haplotypes of 21 samples from three periods of forest human-induced use (Neolithic, Bronze Age and Middle Ages) were found to be consistent with those of modern populations growing in the same geographic areas. Our work paves the way for further studies aiming at using ancient DNA preserved in wood to reconstruct the micro-evolutionary response of trees to climate change and human forest management. © 2018 John Wiley & Sons Ltd.

Paleoparasitological report on Ascaris aDNA from an ancient East Asian sample

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Chang Seok Oh

2010-03-01

Full Text Available In this study, Ascaris DNA was extracted and sequenced from a medieval archaeological sample in Korea. While Ascaris eggs were confirmed to be of human origin by archaeological evidence, it was not possible to pinpoint the exact species due to close genetic relationships among them. Despite this shortcoming, this is the first Ascaris ancient DNA (aDNA report from a medieval Asian country and thus will expand the scope of Ascaris aDNA research.

Evidence of ancient DNA reveals the first European lineage in Iron Age Central China.

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Xie, C Z; Li, C X; Cui, Y Q; Zhang, Q C; Fu, Y Q; Zhu, H; Zhou, H

2007-07-07

Various studies on ancient DNA have attempted to reconstruct population movement in Asia, with much interest focused on determining the arrival of European lineages in ancient East Asia. Here, we discuss our analysis of the mitochondrial DNA of human remains excavated from the Yu Hong tomb in Taiyuan, China, dated 1400 years ago. The burial style of this tomb is characteristic of Central Asia at that time. Our analysis shows that Yu Hong belonged to the haplogroup U5, one of the oldest western Eurasian-specific haplogroups, while his wife can be classified as haplogroup G, the type prevalent in East Asia. Our findings show that this man with European lineage arrived in Taiyuan approximately 1400 years ago, and most probably married a local woman. Haplogroup U5 was the first west Eurasian-specific lineage to be found in the central part of ancient China, and Taiyuan may be the easternmost location of the discovered remains of European lineage in ancient China.

Stories in Genetic Code. The contribution of ancient DNA studies to anthropology and their ethical implications

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Cristian M. Crespo

2010-12-01

Full Text Available For several decades, biological anthropology has employed different molecular markers in population research. Since 1990 different techniques in molecular biology have been developed allowing preserved DNA extraction and its typification in different samples from museums and archaeological sites. Ancient DNA studies related to archaeological issues are now included in the field of Archaeogenetics. In this work we present some of ancient DNA applications in archaeology. We also discuss advantages and limitations for this kind of research and its relationship with ethic and legal norms.

News from the west: ancient DNA from a French megalithic burial chamber.

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Deguilloux, Marie-France; Soler, Ludovic; Pemonge, Marie-Hélène; Scarre, Chris; Joussaume, Roger; Laporte, Luc

2011-01-01

Recent paleogenetic studies have confirmed that the spread of the Neolithic across Europe was neither genetically nor geographically uniform. To extend existing knowledge of the mitochondrial European Neolithic gene pool, we examined six samples of human skeletal material from a French megalithic long mound (c.4200 cal BC). We retrieved HVR-I sequences from three individuals and demonstrated that in the Neolithic period the mtDNA haplogroup N1a, previously only known in central Europe, was as widely distributed as western France. Alternative scenarios are discussed in seeking to explain this result, including Mesolithic ancestry, Neolithic demic diffusion, and long-distance matrimonial exchanges. In light of the limited Neolithic ancient DNA (aDNA) data currently available, we observe that all three scenarios appear equally consistent with paleogenetic and archaeological data. In consequence, we advocate caution in interpreting aDNA in the context of the Neolithic transition in Europe. Nevertheless, our results strengthen conclusions demonstrating genetic discontinuity between modern and ancient Europeans whether through migration, demographic or selection processes, or social practices. Copyright © 2010 Wiley-Liss, Inc.

Pros and cons of methylation-based enrichment methods for ancient DNA

DEFF Research Database (Denmark)

Seguin-Orlando, Andaine; Gamba, Cristina; Der Sarkissian, Clio

2015-01-01

samples, where both DNA fragmentation and deamination have been limited. This work represents an essential step toward the characterization of ancient methylation signatures, which will help understanding the role of epigenetic changes in past environmental and cultural transitions....

Ancient mitogenomics

DEFF Research Database (Denmark)

Ho, Simon Y. W.; Gilbert, Tom

2010-01-01

the technical challenges that face researchers in the field. We catalogue the diverse sequencing methods and source materials used to obtain ancient mitogenomic sequences, summarise the associated genetic and phylogenetic studies that have been conducted, and evaluate the future prospects of the field.......The mitochondrial genome has been the traditional focus of most research into ancient DNA, owing to its high copy number and population-level variability. Despite this long-standing interest in mitochondrial DNA, it was only in 2001 that the first complete ancient mitogenomic sequences were...... obtained. As a result of various methodological developments, including the introduction of high-throughput sequencing techniques, the total number of ancient mitogenome sequences has increased rapidly over the past few years. In this review, we present a brief history of ancient mitogenomics and describe...

Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans

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Slatkin, Montgomery

2016-01-01

When sequencing an ancient DNA sample from a hominin fossil, DNA from present-day humans involved in excavation and extraction will be sequenced along with the endogenous material. This type of contamination is problematic for downstream analyses as it will introduce a bias towards the population of the contaminating individual(s). Quantifying the extent of contamination is a crucial step as it allows researchers to account for possible biases that may arise in downstream genetic analyses. Here, we present an MCMC algorithm to co-estimate the contamination rate, sequencing error rate and demographic parameters—including drift times and admixture rates—for an ancient nuclear genome obtained from human remains, when the putative contaminating DNA comes from present-day humans. We assume we have a large panel representing the putative contaminant population (e.g. European, East Asian or African). The method is implemented in a C++ program called ‘Demographic Inference with Contamination and Error’ (DICE). We applied it to simulations and genome data from ancient Neanderthals and modern humans. With reasonable levels of genome sequence coverage (>3X), we find we can recover accurate estimates of all these parameters, even when the contamination rate is as high as 50%. PMID:27049965

Ancient DNA: Saber-Toothed Cats Are the Same Beasts After All.

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Meachen, Julie A

2017-11-06

Ancient DNA from the saber-toothed cat Homotherium reveals that the late Pleistocene species from Europe and North America were the same. Homotherium turns out to be only distantly related to the well-known saber-toothed Smilodon. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ancient genomics

DEFF Research Database (Denmark)

Der Sarkissian, Clio; Allentoft, Morten Erik; Avila Arcos, Maria del Carmen

2015-01-01

throughput of next generation sequencing platforms and the ability to target short and degraded DNA molecules. Many ancient specimens previously unsuitable for DNA analyses because of extensive degradation can now successfully be used as source materials. Additionally, the analytical power obtained...... by increasing the number of sequence reads to billions effectively means that contamination issues that have haunted aDNA research for decades, particularly in human studies, can now be efficiently and confidently quantified. At present, whole genomes have been sequenced from ancient anatomically modern humans...

Parasitic infections and resource economy of Danish Iron Age settlement through ancient DNA sequencing.

Science.gov (United States)

Tams, Katrine Wegener; Jensen Søe, Martin; Merkyte, Inga; Valeur Seersholm, Frederik; Henriksen, Peter Steen; Klingenberg, Susanne; Willerslev, Eske; Kjær, Kurt H; Hansen, Anders Johannes; Kapel, Christian Moliin Outzen

2018-01-01

In this study, we screen archaeological soil samples by microscopy and analyse the samples by next generation sequencing to obtain results with parasites at species level and untargeted findings of plant and animal DNA. Three separate sediment layers of an ancient man-made pond in Hoby, Denmark, ranging from 100 BC to 200 AD, were analysed by microscopy for presence of intestinal worm eggs and DNA analysis were performed to identify intestinal worms and dietary components. Ancient DNA of parasites, domestic animals and edible plants revealed a change in use of the pond over time reflecting the household practice in the adjacent Iron Age settlement. The most abundant parasite found belonged to the Ascaris genus, which was not possible to type at species level. For all sediment layers the presence of eggs of the human whipworm Trichuris trichiura and the beef tapeworm Taenia saginata suggests continuous disposal of human faeces in the pond. Moreover, the continuous findings of T. saginata further imply beef consumption and may suggest that cattle were living in the immediate surrounding of the site throughout the period. Findings of additional host-specific parasites suggest fluctuating presence of other domestic animals over time: Trichuris suis (pig), Parascaris univalens (horse), Taenia hydatigena (dog and sheep). Likewise, alternating occurrence of aDNA of edible plants may suggest changes in agricultural practices. Moreover, the composition of aDNA of parasites, plants and vertebrates suggests a significant change in the use of the ancient pond over a period of three centuries.

Ancient DNA provides new insight into the maternal lineages and domestication of Chinese donkeys.

Science.gov (United States)

Han, Lu; Zhu, Songbiao; Ning, Chao; Cai, Dawei; Wang, Kai; Chen, Quanjia; Hu, Songmei; Yang, Junkai; Shao, Jing; Zhu, Hong; Zhou, Hui

2014-11-30

The donkey (Equus asinus) is an important domestic animal that provides a reliable source of protein and method of transportation for many human populations. However, the process of domestication and the dispersal routes of the Chinese donkey are still unclear, as donkey remains are sparse in the archaeological record and often confused with horse remains. To explore the maternal origins and dispersal route of Chinese donkeys, both mitochondrial DNA D-loop and cytochrome b gene fragments of 21 suspected donkey remains from four archaeological sites in China were amplified and sequenced. Molecular methods of species identification show that 17 specimens were donkeys and three samples had the maternal genetic signature of horses. One sample that dates to about 20,000 years before present failed to amplify. In this study, the phylogenetic analysis reveals that ancient Chinese donkeys have high mitochondrial DNA diversity and two distinct mitochondrial maternal lineages, known as the Somali and Nubian lineages. These results indicate that the maternal origin of Chinese domestic donkeys was probably related to the African wild ass, which includes the Nubian wild ass (Equus africanus africanus) and the Somali wild ass (Equus africanus somaliensis). Combined with historical records, the results of this study implied that domestic donkeys spread into west and north China before the emergence of the Han dynasty. The number of Chinese domestic donkeys had increased primarily to meet demand for the expansion of trade, and they were likely used as commodities or for shipping goods along the Silk Road during the Tang Dynasty, when the Silk Road reached its golden age. This study is the first to provide valuable ancient animal DNA evidence for early trade between African and Asian populations. The ancient DNA analysis of Chinese donkeys also sheds light on the dynamic process of the maternal origin, domestication, and dispersal route of ancient Chinese donkeys.

Pathogenic microbial ancient DNA: a problem or an opportunity?

DEFF Research Database (Denmark)

Willerslev, Eske; Cooper, Alan

2006-01-01

cloning. Yet these studies have used mobile insertion elements (e.g. IS 6110 in tuberculosis) or conserved loci (e.g. 16S) to detect the presence of pathogens, and very similar or identical sequences have been reported from environmental bacteria (Gilbert et al. 2004). For example, Rollo & Marota (1999......We agree with Donoghue & Spigelman (2005) that, although pathogen studies hold great potential, any discussion requires a critical assessment of the results to date. However, we did note, as did Pääbo et al. (2004), that the field of ancient pathogen DNA still lacks a series of well......-controlled and rigorous studies that address technical issues and reliability criteria. This is unfortunate, as the rapid evolutionary rate of many pathogens offers a unique means to establish the authenticity of ancient pathogen sequences-since they should clearly be ancestral to modern genetic diversity (e.g. Reid et...

Conservation archaeogenomics: ancient DNA and biodiversity in the Anthropocene.

Science.gov (United States)

Hofman, Courtney A; Rick, Torben C; Fleischer, Robert C; Maldonado, Jesús E

2015-09-01

There is growing consensus that we have entered the Anthropocene, a geologic epoch characterized by human domination of the ecosystems of the Earth. With the future uncertain, we are faced with understanding how global biodiversity will respond to anthropogenic perturbations. The archaeological record provides perspective on human-environment relations through time and across space. Ancient DNA (aDNA) analyses of plant and animal remains from archaeological sites are particularly useful for understanding past human-environment interactions, which can help guide conservation decisions during the environmental changes of the Anthropocene. Here, we define the emerging field of conservation archaeogenomics, which integrates archaeological and genomic data to generate baselines or benchmarks for scientists, managers, and policy-makers by evaluating climatic and human impacts on past, present, and future biodiversity. Copyright © 2015 Elsevier Ltd. All rights reserved.

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost

DEFF Research Database (Denmark)

Bellemain, Eva; Davey, Marie L.; Kauserud, Håvard

2013-01-01

The taxonomic and ecological diversity of ancient fungal communities was assessed by combining next generation sequencing and metabarcoding of DNA preserved in permafrost. Twenty-six sediment samples dated 16000-32000 radiocarbon years old from two localities in Siberia were analysed for fungal ITS...

Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past.

Science.gov (United States)

Der Sarkissian, Clio; Pichereau, Vianney; Dupont, Catherine; Ilsøe, Peter C; Perrigault, Mickael; Butler, Paul; Chauvaud, Laurent; Eiríksson, Jón; Scourse, James; Paillard, Christine; Orlando, Ludovic

2017-09-01

Marine mollusc shells enclose a wealth of information on coastal organisms and their environment. Their life history traits as well as (palaeo-) environmental conditions, including temperature, food availability, salinity and pollution, can be traced through the analysis of their shell (micro-) structure and biogeochemical composition. Adding to this list, the DNA entrapped in shell carbonate biominerals potentially offers a novel and complementary proxy both for reconstructing palaeoenvironments and tracking mollusc evolutionary trajectories. Here, we assess this potential by applying DNA extraction, high-throughput shotgun DNA sequencing and metagenomic analyses to marine mollusc shells spanning the last ~7,000 years. We report successful DNA extraction from shells, including a variety of ancient specimens, and find that DNA recovery is highly dependent on their biomineral structure, carbonate layer preservation and disease state. We demonstrate positive taxonomic identification of mollusc species using a combination of mitochondrial DNA genomes, barcodes, genome-scale data and metagenomic approaches. We also find shell biominerals to contain a diversity of microbial DNA from the marine environment. Finally, we reconstruct genomic sequences of organisms closely related to the Vibrio tapetis bacteria from Manila clam shells previously diagnosed with Brown Ring Disease. Our results reveal marine mollusc shells as novel genetic archives of the past, which opens new perspectives in ancient DNA research, with the potential to reconstruct the evolutionary history of molluscs, microbial communities and pathogens in the face of environmental changes. Other future applications include conservation of endangered mollusc species and aquaculture management. © 2017 John Wiley & Sons Ltd.

Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese.

Science.gov (United States)

Li, Jiawei; Zeng, Wen; Zhang, Ye; Ko, Albert Min-Shan; Li, Chunxiang; Zhu, Hong; Fu, Qiaomei; Zhou, Hui

2017-12-04

Ancient Di-Qiang people once resided in the Ganqing region of China, adjacent to the Central Plain area from where Han Chinese originated. While gene flow between the Di-Qiang and Han Chinese has been proposed, there is no evidence to support this view. Here we analyzed the human remains from an early Di-Qiang site (Mogou site dated ~4000 years old) and compared them to other ancient DNA across China, including an early Han-related site (Hengbei site dated ~3000 years old) to establish the underlying genetic relationship between the Di-Qiang and ancestors of Han Chinese. We found Mogou mtDNA haplogroups were highly diverse, comprising 14 haplogroups: A, B, C, D (D*, D4, D5), F, G, M7, M8, M10, M13, M25, N*, N9a, and Z. In contrast, Mogou males were all Y-DNA haplogroup O3a2/P201; specifically one male was further assigned to O3a2c1a/M117 using targeted unique regions on the non-recombining region of the Y-chromosome. We compared Mogou to 7 other ancient and 38 modern Chinese groups, in a total of 1793 individuals, and found that Mogou shared close genetic distances with Taojiazhai (a more recent Di-Qiang population), Hengbei, and Northern Han. We modeled their interactions using Approximate Bayesian Computation, and support was given to a potential admixture of ~13-18% between the Mogou and Northern Han around 3300-3800 years ago. Mogou harbors the earliest genetically identifiable Di-Qiang, ancestral to the Taojiazhai, and up to ~33% paternal and ~70% of its maternal haplogroups could be found in present-day Northern Han Chinese.

Bona fide colour: DNA prediction of human eye and hair colour from ancient and contemporary skeletal remains

NARCIS (Netherlands)

J. Draus-Barini (Jolanta); S. Walsh (Susan); E. Pośpiech (Ewelina); T. Kupiec (Tomasz); H. Głab (Henryk); W. Branicki (Wojciech); M.H. Kayser (Manfred)

2013-01-01

textabstractBackground: DNA analysis of ancient skeletal remains is invaluable in evolutionary biology for exploring the history of species, including humans. Contemporary human bones and teeth, however, are relevant in forensic DNA analyses that deal with the identification of perpetrators, missing

The determination of initial ratio of strontium isotope in rocks and its geological application

International Nuclear Information System (INIS)

Ying Junlong; Zhao Puyun; Lin Xiulan

1989-04-01

The method to determine the initial ratio of strontium isotopes existed in rocks of poor rubidium and rich strontium and main carrier minerals is introduced. The initial ratio obtained from this method is equivalent to that acquired by Rb-Sr isochrone. Based on this result, information on regional rock genesis and mineralization regularities can be provided. It has great significance in the research on activities of ancient continental margin and material sources as well as their evolution. The migration of rock, and ore-forming materials, matallogenetic mechanism and its distribution in the space and time evolution are studied by using these data. In conclusion, the determination of strontium isotopes has broad prospects in the geological research

Ancient genomes

OpenAIRE

Hoelzel, A Rus

2005-01-01

Ever since its invention, the polymerase chain reaction has been the method of choice for work with ancient DNA. In an application of modern genomic methods to material from the Pleistocene, a recent study has instead undertaken to clone and sequence a portion of the ancient genome of the cave bear.

Establishing the validity of domestication genes using DNA from ancient chickens

Science.gov (United States)

Girdland Flink, Linus; Allen, Richard; Barnett, Ross; Malmström, Helena; Peters, Joris; Eriksson, Jonas; Andersson, Leif; Dobney, Keith

2014-01-01

Modern domestic plants and animals are subject to human-driven selection for desired phenotypic traits and behavior. Large-scale genetic studies of modern domestic populations and their wild relatives have revealed not only the genetic mechanisms underlying specific phenotypic traits, but also allowed for the identification of candidate domestication genes. Our understanding of the importance of these genes during the initial stages of the domestication process traditionally rests on the assumption that robust inferences about the past can be made on the basis of modern genetic datasets. A growing body of evidence from ancient DNA studies, however, has revealed that ancient and even historic populations often bear little resemblance to their modern counterparts. Here, we test the temporal context of selection on specific genetic loci known to differentiate modern domestic chickens from their extant wild ancestors. We extracted DNA from 80 ancient chickens excavated from 12 European archaeological sites, dated from ∼280 B.C. to the 18th century A.D. We targeted three unlinked genetic loci: the mitochondrial control region, a gene associated with yellow skin color (β-carotene dioxygenase 2), and a putative domestication gene thought to be linked to photoperiod and reproduction (thyroid-stimulating hormone receptor, TSHR). Our results reveal significant variability in both nuclear genes, suggesting that the commonality of yellow skin in Western breeds and the near fixation of TSHR in all modern chickens took place only in the past 500 y. In addition, mitochondrial variation has increased as a result of recent admixture with exotic breeds. We conclude by emphasizing the perils of inferring the past from modern genetic data alone. PMID:24753608

Establishing the validity of domestication genes using DNA from ancient chickens.

Science.gov (United States)

Girdland Flink, Linus; Allen, Richard; Barnett, Ross; Malmström, Helena; Peters, Joris; Eriksson, Jonas; Andersson, Leif; Dobney, Keith; Larson, Greger

2014-04-29

Modern domestic plants and animals are subject to human-driven selection for desired phenotypic traits and behavior. Large-scale genetic studies of modern domestic populations and their wild relatives have revealed not only the genetic mechanisms underlying specific phenotypic traits, but also allowed for the identification of candidate domestication genes. Our understanding of the importance of these genes during the initial stages of the domestication process traditionally rests on the assumption that robust inferences about the past can be made on the basis of modern genetic datasets. A growing body of evidence from ancient DNA studies, however, has revealed that ancient and even historic populations often bear little resemblance to their modern counterparts. Here, we test the temporal context of selection on specific genetic loci known to differentiate modern domestic chickens from their extant wild ancestors. We extracted DNA from 80 ancient chickens excavated from 12 European archaeological sites, dated from ∼ 280 B.C. to the 18th century A.D. We targeted three unlinked genetic loci: the mitochondrial control region, a gene associated with yellow skin color (β-carotene dioxygenase 2), and a putative domestication gene thought to be linked to photoperiod and reproduction (thyroid-stimulating hormone receptor, TSHR). Our results reveal significant variability in both nuclear genes, suggesting that the commonality of yellow skin in Western breeds and the near fixation of TSHR in all modern chickens took place only in the past 500 y. In addition, mitochondrial variation has increased as a result of recent admixture with exotic breeds. We conclude by emphasizing the perils of inferring the past from modern genetic data alone.

Use DNA to learn from the past: how modern and ancient DNA studies may help reveal the past and predict the future distribution of species

Science.gov (United States)

Edwards, M. E.; Alsos, I. G.; Sjögren, P.; Coissac, E.; Gielly, L.; Yoccoz, N.; Føreid, M. K.; Taberlet, P.

2015-12-01

Knowledge of how climate change affected species distribution in the past may help us predict the effect of ongoing environmental changes. We explore how the use of modern (AFLP fingerprinting techniques) and ancient DNA (metabarcoding P6 loop of chloroplast DNA) help to reveal past distribution of vascular plant species, dispersal processes, and effect of species traits. Based on studies of modern DNA combined with species distribution models, we show the dispersal routes and barriers to dispersal throughout the circumarctic/circumboreal region, likely dispersal vectors, the cost of dispersal in term of loss of genetic diversity, and how these relates to species traits, dispersal distance, and size of colonized region. We also estimate the expected future distribution and loss of genetic diversity and show how this relates to life form and adaptations to dispersal. To gain more knowledge on time lags in past range change events, we rely on palaeorecords. Current data on past distribution are limited by the taxonomic and time resolution of macrofossil and pollen records. We show how this may be improved by studying ancient DNA of lake sediments. DNA of lake sediments recorded about half of the flora surrounding the lake. Compared to macrofossil, the taxonomic resolution is similar but the detection rate is considerable improved. By taking into account main determinants of founder effect, dispersal vectors, and dispersal lags, we may improve our ability to forecast effects of climate change, whereas more studies on ancient DNA may provide us with knowledge on distribution time lags.

A guide to ancient protein studies

DEFF Research Database (Denmark)

Hendy, Jessica; Welker, Frido; Demarchi, Beatrice

2018-01-01

Palaeoproteomics is an emerging neologism used to describe the application of mass spectrometry-based approaches to the study of ancient proteomes. As with palaeogenomics (the study of ancient DNA), it intersects evolutionary biology, archaeology and anthropology, with applications ranging from....... Additionally, in contrast to the ancient DNA community, no consolidated guidelines have been proposed by which researchers, reviewers and editors can evaluate palaeoproteomics data, in part due to the novelty of the field. Here we present a series of precautions and standards for ancient protein research...

DNA in ancient bone - where is it located and how should we extract it?

DEFF Research Database (Denmark)

Campos, Paula; Craig, Oliver E.; Turner-Walker, Gordon

2012-01-01

Despite the widespread use of bones in ancient DNA (aDNA) studies, relatively little concrete information exists in regard to how the DNA in mineralised collagen degrades, or where it survives in the material's architecture. While, at the macrostructural level, physical exclusion of microbes...... and other external contaminants may be an important feature, and, at the ultrastructural level, the adsorption of DNA to hydroxyapatite and/or binding of DNA to Type I collagen may stabilise the DNA, the relative contribution of each, and what other factors may be relevant, are unclear....... The question arises as to whether this may be due to post-collection preservation or just an artefact of the extraction methods used in these different studies? In an attempt to resolve these questions, we examine the efficacy of DNA extraction methods, and the quality and quantity of DNA recovered from both...

Investigating the global dispersal of chickens in prehistory using ancient mitochondrial DNA signatures.

Science.gov (United States)

Storey, Alice A; Athens, J Stephen; Bryant, David; Carson, Mike; Emery, Kitty; deFrance, Susan; Higham, Charles; Huynen, Leon; Intoh, Michiko; Jones, Sharyn; Kirch, Patrick V; Ladefoged, Thegn; McCoy, Patrick; Morales-Muñiz, Arturo; Quiroz, Daniel; Reitz, Elizabeth; Robins, Judith; Walter, Richard; Matisoo-Smith, Elizabeth

2012-01-01

Data from morphology, linguistics, history, and archaeology have all been used to trace the dispersal of chickens from Asian domestication centers to their current global distribution. Each provides a unique perspective which can aid in the reconstruction of prehistory. This study expands on previous investigations by adding a temporal component from ancient DNA and, in some cases, direct dating of bones of individual chickens from a variety of sites in Europe, the Pacific, and the Americas. The results from the ancient DNA analyses of forty-eight archaeologically derived chicken bones provide support for archaeological hypotheses about the prehistoric human transport of chickens. Haplogroup E mtDNA signatures have been amplified from directly dated samples originating in Europe at 1000 B.P. and in the Pacific at 3000 B.P. indicating multiple prehistoric dispersals from a single Asian centre. These two dispersal pathways converged in the Americas where chickens were introduced both by Polynesians and later by Europeans. The results of this study also highlight the inappropriate application of the small stretch of D-loop, traditionally amplified for use in phylogenetic studies, to understanding discrete episodes of chicken translocation in the past. The results of this study lead to the proposal of four hypotheses which will require further scrutiny and rigorous future testing.

Ancient DNA Reveals Late Pleistocene Existence of Ostriches in Indian Sub-Continent.

Directory of Open Access Journals (Sweden)

Sonal Jain

Full Text Available Ancient DNA (aDNA analysis of extinct ratite species is of considerable interest as it provides important insights into their origin, evolution, paleogeographical distribution and vicariant speciation in congruence with continental drift theory. In this study, DNA hotspots were detected in fossilized eggshell fragments of ratites (dated ≥25000 years B.P. by radiocarbon dating using confocal laser scanning microscopy (CLSM. DNA was isolated from five eggshell fragments and a 43 base pair (bp sequence of a 16S rRNA mitochondrial-conserved region was successfully amplified and sequenced from one of the samples. Phylogenetic analysis of the DNA sequence revealed a 92% identity of the fossil eggshells to Struthio camelus and their position basal to other palaeognaths, consistent with the vicariant speciation model. Our study provides the first molecular evidence for the presence of ostriches in India, complementing the continental drift theory of biogeographical movement of ostriches in India, and opening up a new window into the evolutionary history of ratites.

Tracking down human contamination in ancient human teeth

DEFF Research Database (Denmark)

Sampietro, María Lourdes; Gilbert, M Thomas P; Lao, Oscar

2006-01-01

DNA sequences can be used to support data authenticity is misleading in scenarios where the presence of old contaminant sequences is possible. We argue therefore that the typing of those involved in the manipulation of the ancient human specimens is critical in order to ensure that generated results......DNA contamination arising from the manipulation of ancient calcified tissue samples is a poorly understood, yet fundamental, problem that affects the reliability of ancient DNA (aDNA) studies. We have typed the mitochondrial DNA hypervariable region I of the only 6 people involved in the excavation...

DNA typing of ancient parasite eggs from environmental samples identifies human and animal worm infections in viking-age settlement

DEFF Research Database (Denmark)

Søe, Martin Jensen; Nejsum, Peter; Fredensborg, Brian Lund

2015-01-01

Ancient parasite eggs were recovered from environmental samples collected at a Viking-age settlement in Viborg, Denmark, dated 1018-1030 A.D. Morphological examination identified Ascaris sp., Trichuris sp., and Fasciola sp. eggs, but size and shape did not allow species identification. By carefully...... selecting genetic markers, PCR amplification and sequencing of ancient DNA (aDNA) isolates resulted in identification of: the human whipworm, Trichuris trichiura, using SSUrRNA sequence homology; Ascaris sp. with 100% homology to cox1 haplotype 07; and Fasciola hepatica using ITS1 sequence homology...

Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past

DEFF Research Database (Denmark)

Der Sarkissian, Clio; Pichereau, Vianney; Dupont, Catherine

2017-01-01

Marine mollusc shells enclose a wealth of information on coastal organisms and their environment. Their life history traits as well as (palaeo-) environmental conditions, including temperature, food availability, salinity and pollution, can be traced through the analysis of their shell (micro...... extraction, high-throughput shotgun DNA sequencing and metagenomic analyses to marine mollusc shells spanning the last ~7,000 years. We report successful DNA extraction from shells, including a variety of ancient specimens, and find that DNA recovery is highly dependent on their biomineral structure......, carbonate layer preservation and disease state. We demonstrate positive taxonomic identification of mollusc species using a combination of mitochondrial DNA genomes, barcodes, genome-scale data and metagenomic approaches. We also find shell biominerals to contain a diversity of microbial DNA from the marine...

SL1 RNA gene recovery from Enterobius vermicularis ancient DNA in pre-Columbian human coprolites.

Science.gov (United States)

Iñiguez, Alena Mayo; Reinhard, Karl; Carvalho Gonçalves, Marcelo Luiz; Ferreira, Luiz Fernando; Araújo, Adauto; Paulo Vicente, Ana Carolina

2006-11-01

Enterobius vermicularis, pinworm, is one of the most common helminths worldwide, infecting nearly a billion people at all socio-economic levels. In prehistoric populations the paleoparasitological findings show a pinworm homogeneous distribution among hunter-gatherers in North America, intensified with the advent of agriculture. This same increase also occurred in the transition from nomad hunter-gatherers to sedentary farmers in South America, although E. vermicularis infection encompasses only the ancient Andean peoples, with no record among the pre-Colombian populations in the South American lowlands. However, the outline of pinworm paleoepidemiology has been supported by microscopic finding of eggs recovered from coprolites. Since molecular techniques are precise and sensitive in detecting pathogen ancient DNA (aDNA), and also could provide insights into the parasite evolutionary history, in this work we have performed a molecular paleoparasitological study of E. vermicularis. aDNA was recovered and pinworm 5S rRNA spacer sequences were determined from pre-Columbian coprolites (4110 BC-AD 900) from four different North and South American archaeological sites. The sequence analysis confirmed E. vermicularis identity and revealed a similarity among ancient and modern sequences. Moreover, polymorphisms were identified at the relative positions 160, 173 and 180, in independent coprolite samples from Tulán, San Pedro de Atacama, Chile (1080-950 BC). We also verified the presence of peculiarities (Splicing leader (SL1) RNA sequence, spliced donor site, the Sm antigen biding site, and RNA secondary structure) which characterise the SL1 RNA gene. The analysis shows that the SL1 RNA gene of contemporary pinworms was present in pre-Columbian E. vermicularis by 6110 years ago. We were successful in detecting E. vermicularis aDNA even in coprolites without direct microscopic evidence of the eggs, improving the diagnosis of helminth infections in the past and further

Tamil merchant in ancient Mesopotamia.

Directory of Open Access Journals (Sweden)

Malliya Gounder Palanichamy

Full Text Available Recent analyses of ancient Mesopotamian mitochondrial genomes have suggested a genetic link between the Indian subcontinent and Mesopotamian civilization. There is no consensus on the origin of the ancient Mesopotamians. They may be descendants of migrants, who founded regional Mesopotamian groups like that of Terqa or they may be merchants who were involved in trans Mesopotamia trade. To identify the Indian source population showing linkage to the ancient Mesopotamians, we screened a total of 15,751 mitochondrial DNAs (11,432 from the literature and 4,319 from this study representing all major populations of India. Our results although suggest that south India (Tamil Nadu and northeast India served as the source of the ancient Mesopotamian mtDNA gene pool, mtDNA of these ancient Mesopotamians probably contributed by Tamil merchants who were involved in the Indo-Roman trade.

Ancient microbes from halite fluid inclusions: optimized surface sterilization and DNA extraction.

Directory of Open Access Journals (Sweden)

Krithivasan Sankaranarayanan

Full Text Available Fluid inclusions in evaporite minerals (halite, gypsum, etc. potentially preserve genetic records of microbial diversity and changing environmental conditions of Earth's hydrosphere for nearly one billion years. Here we describe a robust protocol for surface sterilization and retrieval of DNA from fluid inclusions in halite that, unlike previously published methods, guarantees removal of potentially contaminating surface-bound DNA. The protocol involves microscopic visualization of cell structures, deliberate surface contamination followed by surface sterilization with acid and bleach washes, and DNA extraction using Amicon centrifugal filters. Methods were verified on halite crystals of four different ages from Saline Valley, California (modern, 36 ka, 64 ka, and 150 ka, with retrieval of algal and archaeal DNA, and characterization of the algal community using ITS1 sequences. The protocol we developed opens up new avenues for study of ancient microbial ecosystems in fluid inclusions, understanding microbial evolution across geological time, and investigating the antiquity of life on earth and other parts of the solar system.

Ancient microbes from halite fluid inclusions: optimized surface sterilization and DNA extraction.

Science.gov (United States)

Sankaranarayanan, Krithivasan; Timofeeff, Michael N; Spathis, Rita; Lowenstein, Tim K; Lum, J Koji

2011-01-01

Fluid inclusions in evaporite minerals (halite, gypsum, etc.) potentially preserve genetic records of microbial diversity and changing environmental conditions of Earth's hydrosphere for nearly one billion years. Here we describe a robust protocol for surface sterilization and retrieval of DNA from fluid inclusions in halite that, unlike previously published methods, guarantees removal of potentially contaminating surface-bound DNA. The protocol involves microscopic visualization of cell structures, deliberate surface contamination followed by surface sterilization with acid and bleach washes, and DNA extraction using Amicon centrifugal filters. Methods were verified on halite crystals of four different ages from Saline Valley, California (modern, 36 ka, 64 ka, and 150 ka), with retrieval of algal and archaeal DNA, and characterization of the algal community using ITS1 sequences. The protocol we developed opens up new avenues for study of ancient microbial ecosystems in fluid inclusions, understanding microbial evolution across geological time, and investigating the antiquity of life on earth and other parts of the solar system.

Optical dating of perennially frozen deposits associated with preserved ancient plant and animal DNA in north-central Siberia

DEFF Research Database (Denmark)

Arnold, L.J.; Roberts, R.G.; Macphee, R.D.E.

2008-01-01

We present chronological constraints on a suite of permanently frozen fluvial deposits which contain ancient DNA (aDNA) from the Taimyr Peninsula of north-central Siberia. The luminescence phenomenology of these samples is first discussed, focusing on the optically stimulated luminescence (OSL) d...... of providing a reliable chronometric framework for sedimentary aDNA records in permafrost environments. (C) 2007 Elsevier Ltd. All rights reserved Udgivelsesdato: 2008...

Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes

Science.gov (United States)

Doerr, Daniel; Chauve, Cedric

2017-01-01

Yersinia pestis is the causative agent of the bubonic plague, a disease responsible for several dramatic historical pandemics. Progress in ancient DNA (aDNA) sequencing rendered possible the sequencing of whole genomes of important human pathogens, including the ancient Y. pestis strains responsible for outbreaks of the bubonic plague in London in the 14th century and in Marseille in the 18th century, among others. However, aDNA sequencing data are still characterized by short reads and non-uniform coverage, so assembling ancient pathogen genomes remains challenging and often prevents a detailed study of genome rearrangements. It has recently been shown that comparative scaffolding approaches can improve the assembly of ancient Y. pestis genomes at a chromosome level. In the present work, we address the last step of genome assembly, the gap-filling stage. We describe an optimization-based method AGapEs (ancestral gap estimation) to fill in inter-contig gaps using a combination of a template obtained from related extant genomes and aDNA reads. We show how this approach can be used to refine comparative scaffolding by selecting contig adjacencies supported by a mix of unassembled aDNA reads and comparative signal. We applied our method to two Y. pestis data sets from the London and Marseilles outbreaks, for which we obtained highly improved genome assemblies for both genomes, comprised of, respectively, five and six scaffolds with 95 % of the assemblies supported by ancient reads. We analysed the genome evolution between both ancient genomes in terms of genome rearrangements, and observed a high level of synteny conservation between these strains. PMID:29114402

Toward a new history and geography of human genes informed by ancient DNA.

Science.gov (United States)

Pickrell, Joseph K; Reich, David

2014-09-01

Genetic information contains a record of the history of our species, and technological advances have transformed our ability to access this record. Many studies have used genome-wide data from populations today to learn about the peopling of the globe and subsequent adaptation to local conditions. Implicit in this research is the assumption that the geographic locations of people today are informative about the geographic locations of their ancestors in the distant past. However, it is now clear that long-range migration, admixture, and population replacement subsequent to the initial out-of-Africa expansion have altered the genetic structure of most of the world's human populations. In light of this we argue that it is time to critically reevaluate current models of the peopling of the globe, as well as the importance of natural selection in determining the geographic distribution of phenotypes. We specifically highlight the transformative potential of ancient DNA. By accessing the genetic make-up of populations living at archaeologically known times and places, ancient DNA makes it possible to directly track migrations and responses to natural selection. Copyright © 2014 Elsevier Ltd. All rights reserved.

Roche genome sequencer FLX based high-throughput sequencing of ancient DNA

DEFF Research Database (Denmark)

Alquezar-Planas, David E; Fordyce, Sarah Louise

2012-01-01

Since the development of so-called "next generation" high-throughput sequencing in 2005, this technology has been applied to a variety of fields. Such applications include disease studies, evolutionary investigations, and ancient DNA. Each application requires a specialized protocol to ensure...... that the data produced is optimal. Although much of the procedure can be followed directly from the manufacturer's protocols, the key differences lie in the library preparation steps. This chapter presents an optimized protocol for the sequencing of fossil remains and museum specimens, commonly referred...

The Geographic Origins of Ethnic Groups in the Indian Subcontinent: Exploring Ancient Footprints with Y-DNA Haplogroups

Directory of Open Access Journals (Sweden)

David G. Mahal

2018-01-01

Full Text Available Several studies have evaluated the movements of large populations to the Indian subcontinent; however, the ancient geographic origins of smaller ethnic communities are not clear. Although historians have attempted to identify the origins of some ethnic groups, the evidence is typically anecdotal and based upon what others have written before. In this study, recent developments in DNA science were assessed to provide a contemporary perspective by analyzing the Y chromosome haplogroups of some key ethnic groups and tracing their ancient geographical origins from genetic markers on the Y-DNA haplogroup tree. A total of 2,504 Y-DNA haplotypes, representing 50 different ethnic groups in the Indian subcontinent, were analyzed. The results identified 14 different haplogroups with 14 geographic origins for these people. Moreover, every ethnic group had representation in more than one haplogroup, indicating multiple geographic origins for these communities. The results also showed that despite their varied languages and cultural differences, most ethnic groups shared some common ancestors because of admixture in the past. These findings provide new insights into the ancient geographic origins of ethnic groups in the Indian subcontinent. With about 2,000 other ethnic groups and tribes in the region, it is expected that more scientific discoveries will follow, providing insights into how, from where, and when the ancestors of these people arrived in the subcontinent to create so many different communities.

Absence of ancient DNA in sub-fossil insect inclusions preserved in 'Anthropocene' Colombian copal.

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David Penney

Full Text Available Insects preserved in copal, the sub-fossilized resin precursor of amber, have potential value in molecular ecological studies of recently-extinct species and of extant species that have never been collected as living specimens. The objective of the work reported in this paper was therefore to determine if ancient DNA is present in insects preserved in copal. We prepared DNA libraries from two stingless bees (Apidae: Meliponini: Trigonisca ameliae preserved in 'Anthropocene' Colombian copal, dated to 'post-Bomb' and 10,612±62 cal yr BP, respectively, and obtained sequence reads using the GS Junior 454 System. Read numbers were low, but were significantly higher for DNA extracts prepared from crushed insects compared with extracts obtained by a non-destructive method. The younger specimen yielded sequence reads up to 535 nucleotides in length, but searches of these sequences against the nucleotide database revealed very few significant matches. None of these hits was to stingless bees though one read of 97 nucleotides aligned with two non-contiguous segments of the mitochondrial cytochrome oxidase subunit I gene of the East Asia bumblebee Bombus hypocrita. The most significant hit was for 452 nucleotides of a 470-nucleotide read that aligned with part of the genome of the root-nodulating bacterium Bradyrhizobium japonicum. The other significant hits were to proteobacteria and an actinomycete. Searches directed specifically at Apidae nucleotide sequences only gave short and insignificant alignments. All of the reads from the older specimen appeared to be artefacts. We were therefore unable to obtain any convincing evidence for the preservation of ancient DNA in either of the two copal inclusions that we studied, and conclude that DNA is not preserved in this type of material. Our results raise further doubts about claims of DNA extraction from fossil insects in amber, many millions of years older than copal.

Resurrecting ancient animal genomes: the extinct moa and more.

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Huynen, Leon; Millar, Craig D; Lambert, David M

2012-08-01

Recently two developments have had a major impact on the field of ancient DNA (aDNA). First, new advances in DNA sequencing, in combination with improved capture/enrichment methods, have resulted in the recovery of orders of magnitude more DNA sequence data from ancient animals. Second, there has been an increase in the range of tissue types employed in aDNA. Hair in particular has proven to be very successful as a source of DNA because of its low levels of contamination and high level of ancient endogenous DNA. These developments have resulted in significant advances in our understanding of recently extinct animals: namely their evolutionary relationships, physiology, and even behaviour. Hair has been used to recover the first complete ancient nuclear genome, that of the extinct woolly mammoth, which then facilitated the expression and functional analysis of haemoglobins. Finally, we speculate on the consequences of these developments for the possibility of recreating extinct animals. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Reconstructing ancient genomes and epigenomes

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Orlando, Ludovic Antoine Alexandre; Gilbert, M. Thomas P.; Willerslev, Eske

2015-01-01

DNA studies have now progressed to whole-genome sequencing for an increasing number of ancient individuals and extinct species, as well as to epigenomic characterization. Such advances have enabled the sequencing of specimens of up to 1 million years old, which, owing to their extensive DNA damage...... and contamination, were previously not amenable to genetic analyses. In this Review, we discuss these varied technical challenges and solutions for sequencing ancient genomes and epigenomes....

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus.

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Weyrich, Laura S; Duchene, Sebastian; Soubrier, Julien; Arriola, Luis; Llamas, Bastien; Breen, James; Morris, Alan G; Alt, Kurt W; Caramelli, David; Dresely, Veit; Farrell, Milly; Farrer, Andrew G; Francken, Michael; Gully, Neville; Haak, Wolfgang; Hardy, Karen; Harvati, Katerina; Held, Petra; Holmes, Edward C; Kaidonis, John; Lalueza-Fox, Carles; de la Rasilla, Marco; Rosas, Antonio; Semal, Patrick; Soltysiak, Arkadiusz; Townsend, Grant; Usai, Donatella; Wahl, Joachim; Huson, Daniel H; Dobney, Keith; Cooper, Alan

2017-04-20

Recent genomic data have revealed multiple interactions between Neanderthals and modern humans, but there is currently little genetic evidence regarding Neanderthal behaviour, diet, or disease. Here we describe the shotgun-sequencing of ancient DNA from five specimens of Neanderthal calcified dental plaque (calculus) and the characterization of regional differences in Neanderthal ecology. At Spy cave, Belgium, Neanderthal diet was heavily meat based and included woolly rhinoceros and wild sheep (mouflon), characteristic of a steppe environment. In contrast, no meat was detected in the diet of Neanderthals from El Sidrón cave, Spain, and dietary components of mushrooms, pine nuts, and moss reflected forest gathering. Differences in diet were also linked to an overall shift in the oral bacterial community (microbiota) and suggested that meat consumption contributed to substantial variation within Neanderthal microbiota. Evidence for self-medication was detected in an El Sidrón Neanderthal with a dental abscess and a chronic gastrointestinal pathogen (Enterocytozoon bieneusi). Metagenomic data from this individual also contained a nearly complete genome of the archaeal commensal Methanobrevibacter oralis (10.2× depth of coverage)-the oldest draft microbial genome generated to date, at around 48,000 years old. DNA preserved within dental calculus represents a notable source of information about the behaviour and health of ancient hominin specimens, as well as a unique system that is useful for the study of long-term microbial evolution.

Ancient Biomolecules and Evolutionary Inference

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Cappellini, Enrico; Prohaska, Ana; Racimo, Fernando

2018-01-01

Over the last decade, studies of ancient biomolecules-particularly ancient DNA, proteins, and lipids-have revolutionized our understanding of evolutionary history. Though initially fraught with many challenges, the field now stands on firm foundations. Researchers now successfully retrieve nucleo...

Deciphering Equine Evolution and Spatial Ancestry with Ancient Data

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Jónsson, Hákon

High-throughput sequencing has opened ancient DNA research to genomics, revolutionizing the amount of genetic information retrievable from archaeological and paleontological remains. Paleogenomics is still in infancy and requires substantial improvements in computational methods tailored to the s......High-throughput sequencing has opened ancient DNA research to genomics, revolutionizing the amount of genetic information retrievable from archaeological and paleontological remains. Paleogenomics is still in infancy and requires substantial improvements in computational methods tailored...... in the analysis of environmental bacterial sequences, which generally dominate ancient DNA extracts, and in the first pipeline completely devoted to the computational analysis of raw ancient DNA sequences. We then develop a spatially explicit method for determining which extant populations show the greatest...... genetic anity to ancient individuals, which often represents the key question in human paleogenomic projects. We applied the computational infrastructure developed to complete the genomic characterization of extant members of the genus Equus, which is composed of horses, asses and zebras. We sequenced...

A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA

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Kuch, Melanie; Gröcke, Darren R; Knyf, Martin C

2007-01-01

, which fall within haplogroups X and C, consistent with Northeastern Native populations today. In addition we have sexed the male using a novel-sexing assay and confirmed the authenticity of his Y chromosome with the presence of the Native American specific Y-QM3 single nucleotide polymorphism (SNP......). This is the first ancient nuclear SNP typed from a Native population in the Americas. In addition, using the same teeth we conducted a stable isotopes analysis of collagen and dentine to show that both individuals relied on marine sources (fresh and salt water fish, seals) with no hierarchy seen between them......, Nonosabasut) were of admixed (European-Native American) descent. We also analyzed patterns of DNA damage in the clones of authentic mtDNA sequences; there is no tendency for DNA damage to occur preferentially at previously defined mutational hotspots, suggesting that such mutational hotspots...

Ancient Resistome.

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Olaitan, Abiola Olumuyiwa; Rolain, Jean-Marc

2016-08-01

Antibiotic resistance is an ancient biological mechanism in bacteria, although its proliferation in our contemporary world has been amplified through antimicrobial therapy. Recent studies conducted on ancient environmental and human samples have uncovered numerous antibiotic-resistant bacteria and resistance genes. The resistance genes that have been reported from the analysis of ancient bacterial DNA include genes coding for several classes of antibiotics, such as glycopeptides, β-lactams, tetracyclines, and macrolides. The investigation of the resistome of ancient bacteria is a recent and emerging field of research, and technological advancements such as next-generation sequencing will further contribute to its growth. It is hoped that the knowledge gained from this research will help us to better understand the evolution of antibiotic resistance genes and will also be used in drug design as a proactive measure against antibiotic resistance.

Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians

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Malmström, Helena; Gilbert, M Thomas P; Thomas, Mark G

2009-01-01

of the two cultures in Scandinavia has been cited as an argument against population replacement between the Mesolithic and the present [7, 8]. Through analysis of DNA extracted from ancient Scandinavian human remains, we show that people of the Pitted Ware culture were not the direct ancestors of modern......]. Furthermore, our data are consistent with the view that the eastern Baltic represents a genetic refugia for some of the European hunter-gatherer populations....

Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears.

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Fortes, Gloria G; Grandal-d'Anglade, Aurora; Kolbe, Ben; Fernandes, Daniel; Meleg, Ioana N; García-Vázquez, Ana; Pinto-Llona, Ana C; Constantin, Silviu; de Torres, Trino J; Ortiz, Jose E; Frischauf, Christine; Rabeder, Gernot; Hofreiter, Michael; Barlow, Axel

2016-10-01

Ancient DNA studies have revolutionized the study of extinct species and populations, providing insights on phylogeny, phylogeography, admixture and demographic history. However, inferences on behaviour and sociality have been far less frequent. Here, we investigate the complete mitochondrial genomes of extinct Late Pleistocene cave bears and middle Holocene brown bears that each inhabited multiple geographically proximate caves in northern Spain. In cave bears, we find that, although most caves were occupied simultaneously, each cave almost exclusively contains a unique lineage of closely related haplotypes. This remarkable pattern suggests extreme fidelity to their birth site in cave bears, best described as homing behaviour, and that cave bears formed stable maternal social groups at least for hibernation. In contrast, brown bears do not show any strong association of mitochondrial lineage and cave, suggesting that these two closely related species differed in aspects of their behaviour and sociality. This difference is likely to have contributed to cave bear extinction, which occurred at a time in which competition for caves between bears and humans was likely intense and the ability to rapidly colonize new hibernation sites would have been crucial for the survival of a species so dependent on caves for hibernation as cave bears. Our study demonstrates the potential of ancient DNA to uncover patterns of behaviour and sociality in ancient species and populations, even those that went extinct many tens of thousands of years ago. © 2016 John Wiley & Sons Ltd.

Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary

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Almathen, Faisal; Charruau, Pauline; Mohandesan, Elmira; Mwacharo, Joram M.; Orozco-terWengel, Pablo; Pitt, Daniel; Abdussamad, Abdussamad M.; Uerpmann, Margarethe; Uerpmann, Hans-Peter; De Cupere, Bea; Magee, Peter; Alnaqeeb, Majed A.; Salim, Bashir; Raziq, Abdul; Dessie, Tadelle; Abdelhadi, Omer M.; Banabazi, Mohammad H.; Al-Eknah, Marzook; Walzer, Chris; Faye, Bernard; Hofreiter, Michael; Peters, Joris; Hanotte, Olivier

2016-01-01

Dromedaries have been fundamental to the development of human societies in arid landscapes and for long-distance trade across hostile hot terrains for 3,000 y. Today they continue to be an important livestock resource in marginal agro-ecological zones. However, the history of dromedary domestication and the influence of ancient trading networks on their genetic structure have remained elusive. We combined ancient DNA sequences of wild and early-domesticated dromedary samples from arid regions with nuclear microsatellite and mitochondrial genotype information from 1,083 extant animals collected across the species’ range. We observe little phylogeographic signal in the modern population, indicative of extensive gene flow and virtually affecting all regions except East Africa, where dromedary populations have remained relatively isolated. In agreement with archaeological findings, we identify wild dromedaries from the southeast Arabian Peninsula among the founders of the domestic dromedary gene pool. Approximate Bayesian computations further support the “restocking from the wild” hypothesis, with an initial domestication followed by introgression from individuals from wild, now-extinct populations. Compared with other livestock, which show a long history of gene flow with their wild ancestors, we find a high initial diversity relative to the native distribution of the wild ancestor on the Arabian Peninsula and to the brief coexistence of early-domesticated and wild individuals. This study also demonstrates the potential to retrieve ancient DNA sequences from osseous remains excavated in hot and dry desert environments. PMID:27162355

Ancient DNA analysis suggests negligible impact of the Wari Empire expansion in Peru's central coast during the Middle Horizon

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Valverde, G.; Romero, M.; Espinoza, I.; Cooper, A.; Fehren-Schmitz, L.; Llamas, B.; Haak, W.

2016-01-01

The analysis of ancient human DNA from South America allows the exploration of pre-Columbian population history through time and to directly test hypotheses about cultural and demographic evolution. The Middle Horizon (650?1100 AD) represents a major transitional period in the Central Andes, which is associated with the development and expansion of ancient Andean empires such as Wari and Tiwanaku. These empires facilitated a series of interregional interactions and socio-political changes, wh...

Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics

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Lumibao Candice Y

2011-01-01

Full Text Available Abstract Background Quaternary plant ecology in much of the world has historically relied on morphological identification of macro- and microfossils from sediments of small freshwater lakes. Here, we report new protocols that reliably yield DNA sequence data from Holocene plant macrofossils and bulk lake sediment used to infer ecological change. This will allow changes in census populations, estimated from fossils and associated sediment, to be directly associated with population genetic changes. Results We successfully sequenced DNA from 64 samples (out of 126 comprised of bulk sediment and seeds, leaf fragments, budscales, and samaras extracted from Holocene lake sediments in the western Great Lakes region of North America. Overall, DNA yields were low. However, we were able to reliably amplify samples with as few as 10 copies of a short cpDNA fragment with little detectable PCR inhibition. Our success rate was highest for sediments Conclusions An ability to extract ancient DNA from Holocene sediments potentially allows exciting new insights into the genetic consequences of long-term environmental change. The low DNA copy numbers we found in fossil material and the discovery of multiple sequence variants from single macrofossil extractions highlight the need for careful experimental and laboratory protocols. Further application of these protocols should lead to better understanding of the ecological and evolutionary consequences of environmental change.

Non-invasive ancient DNA protocol for fluid-preserved specimens and phylogenetic systematics of the genus Orestias (Teleostei: Cyprinodontidae).

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Garrigos, Yareli Esquer; Hugueny, Bernard; Koerner, Kellie; Ibañez, Carla; Bonillo, Celine; Pruvost, Patrice; Causse, Romain; Cruaud, Corinne; Gaubert, Philippe

2013-01-01

Specimens stored in museum collections represent a crucial source of morphological and genetic information, notably for taxonomically problematic groups and extinct taxa. Although fluid-preserved specimens of groups such as teleosts may constitute an almost infinite source of DNA, few ancient DNA protocols have been applied to such material. In this study, we describe a non-invasive Guanidine-based (GuSCN) ancient DNA extraction protocol adapted to fluid-preserved specimens that we use to re-assess the systematics of the genus Orestias (Cyprinodontidae: Teleostei). The latter regroups pupfishes endemic to the inter-Andean basin that have been considered as a 'species flock', and for which the morphology-based taxonomic delimitations have been hotly debated. We extracted DNA from the type specimens of Orestias kept at the Muséum National d'Histoire Naturelle of Paris, France, including the extinct species O. cuvieri. We then built the first molecular (control region [CR] and rhodopsin [RH]) phylogeny including historical and recently collected representatives of all the Orestias complexes as recognized by Parenti (1984a): agassizii, cuvieri, gilsoni and mulleri. Our ancient DNA extraction protocol was validated after PCR amplification through an approach based on fragment-by-fragment chimera detection. After optimization, we were able to amplify Titicaca. We could not recover the reciprocal monophyly of any of the 15 species or morphotypes that were considered in our analyses, possibly due to incomplete lineage sorting and/or hybridization events. As a consequence, our results starkly question the delineation of a series of diagnostic characters listed in the literature for Orestias. Although not included in our phylogenetic analysis, the syntype of O. jussiei could not be assigned to the agassizii complex as newly defined. The CR sequence of the extinct O. cuvieri was recovered within the cuvieri clade (same haplotype as one representative of O. pentlandii), so

DNA typing of ancient parasite eggs from environmental samples identifies human and animal worm infections in Viking-age settlement.

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Søe, Martin Jensen; Nejsum, Peter; Fredensborg, Brian Lund; Kapel, Christian Moliin Outzen

2015-02-01

Ancient parasite eggs were recovered from environmental samples collected at a Viking-age settlement in Viborg, Denmark, dated 1018-1030 A.D. Morphological examination identified Ascaris sp., Trichuris sp., and Fasciola sp. eggs, but size and shape did not allow species identification. By carefully selecting genetic markers, PCR amplification and sequencing of ancient DNA (aDNA) isolates resulted in identification of: the human whipworm, Trichuris trichiura , using SSUrRNA sequence homology; Ascaris sp. with 100% homology to cox1 haplotype 07; and Fasciola hepatica using ITS1 sequence homology. The identification of T. trichiura eggs indicates that human fecal material is present and, hence, that the Ascaris sp. haplotype 07 was most likely a human variant in Viking-age Denmark. The location of the F. hepatica finding suggests that sheep or cattle are the most likely hosts. Further, we sequenced the Ascaris sp. 18S rRNA gene in recent isolates from humans and pigs of global distribution and show that this is not a suited marker for species-specific identification. Finally, we discuss ancient parasitism in Denmark and the implementation of aDNA analysis methods in paleoparasitological studies. We argue that when employing species-specific identification, soil samples offer excellent opportunities for studies of human parasite infections and of human and animal interactions of the past.

Prehistoric introduction of domestic pigs onto the Okinawa Islands: ancient mitochondrial DNA evidence.

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Watanobe, Takuma; Ishiguro, Naotaka; Nakano, Masuo; Takamiya, Hiroto; Matsui, Akira; Hongo, Hitomi

2002-08-01

Ancient DNAs of Sus scrofa specimens excavated from archaeological sites on the Okinawa islands were examined to clarify the genetic relationships among prehistoric Sus scrofa, modern wild boars and domestic pigs inhabiting the Ryukyu archipelago, the Japanese islands, and the Asian continent. We extracted remain DNA from 161 bone specimens excavated from 12 archaeological sites on the Okinawa islands and successfully amplified mitochondrial DNA control region fragments from 33 of 161 specimens. Pairwise difference between prehistoric and modern S. scrofa nucleotide sequences showed that haplotypes of the East Asian domestic pig lineage were found from archaeological specimens together with Ryukyu wild boars native to the Ryukyu archipelago. Phylogenetic analysis of 14 ancient sequences (11 haplotypes; 574 bp) indicated that S. scrofa specimens from two Yayoi-Heian sites (Kitahara and Ara shellmiddens) and two Recent Times sites (Wakuta Kiln and Kiyuna sites) are grouped with modern East Asian domestic pigs. Sus scrofa specimens from Shimizu shellmidden (Yayoi-Heian Period) were very closely related to modern Sus scrofa riukiuanus but had a unique nucleotide insertion, indicating that the population is genetically distinct from the lineage of modern Ryukyu wild boars. This genetic evidence suggests that domestic pigs from the Asian continent were introduced to the Okinawa islands in the early Yayoi-Heian period (1700-2000 BP), or earlier.

Detection of 400-year-old Yersinia pestis DNA in human dental pulp: an approach to the diagnosis of ancient septicemia.

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Drancourt, M; Aboudharam, G; Signoli, M; Dutour, O; Raoult, D

1998-10-13

Ancient septicemic plague epidemics were reported to have killed millions of people for 2 millenniums. However, confident diagnosis of ancient septicemia solely on the basis of historical clinical observations is not possible. The lack of suitable infected material has prevented direct demonstration of ancient septicemia; thus, the history of most infections such as plague remains hypothetical. The durability of dental pulp, together with its natural sterility, makes it a suitable material on which to base such research. We hypothesized that it would be a lasting refuge for Yersinia pestis, the plague agent. DNA extracts were made from the dental pulp of 12 unerupted teeth extracted from skeletons excavated from 16th and 18th century French graves of persons thought to have died of plague ("plague teeth") and from 7 ancient negative control teeth. PCRs incorporating ancient DNA extracts and primers specific for the human beta-globin gene demonstrated the absence of inhibitors in these preparations. The incorporation of primers specific for Y. pestis rpoB (the RNA polymerase beta-subunit-encoding gene) and the recognized virulence-associated pla (the plasminogen activator-encoding gene) repeatedly yielded products that had a nucleotide sequence indistinguishable from that of modern day isolates of the bacterium. The specific pla sequence was obtained from 6 of 12 plague skeleton teeth but 0 of 7 negative controls (P plague was achieved for historically identified victims, and we have confirmed the presence of the disease at the end of 16th century in France. Dental pulp is an attractive target in the quest to determine the etiology of septicemic illnesses detected in ancient corpses. Molecular techniques could be applied to this material to resolve historical outbreaks.

Ancient DNA analyses of museum specimens from selected Presbytis (primate: Colobinae) based on partial Cyt b sequences

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Aifat, N. R.; Yaakop, S.; Md-Zain, B. M.

2016-11-01

The IUCN Red List of Threatened Species has categorized Malaysian primates from being data deficient to critically endanger. Thus, ancient DNA analyses hold great potential to understand phylogeny, phylogeography and population history of extinct and extant species. Museum samples are one of the alternatives to provide important sources of biological materials for a large proportion of ancient DNA studies. In this study, a total of six museum skin samples from species Presbytis hosei (4 samples) and Presbytis frontata (2 samples), aged between 43 and 124 years old were extracted to obtain the DNA. Extraction was done by using QIAGEN QIAamp DNA Investigator Kit and the ability of this kit to extract museum skin samples was tested by amplification of partial Cyt b sequence using species-specific designed primer. Two primer pairs were designed specifically for P. hosei and P. frontata, respectively. These primer pairs proved to be efficient in amplifying 200bp of the targeted species in the optimized PCR conditions. The performance of the sequences were tested to determine genetic distance of genus Presbytis in Malaysia. From the analyses, P. hosei is closely related to P. chrysomelas and P. frontata with the value of 0.095 and 0.106, respectively. Cyt b gave a clear data in determining relationships among Bornean species. Thus, with the optimized condition, museum specimens can be used for molecular systematic studies of the Malaysian primates.

Mitochondrial DNA variation, but not nuclear DNA, sharply divides morphologically identical chameleons along an ancient geographic barrier.

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Dan Bar Yaacov

Full Text Available The Levant is an important migration bridge, harboring border-zones between Afrotropical and palearctic species. Accordingly, Chameleo chameleon, a common species throughout the Mediterranean basin, is morphologically divided in the southern Levant (Israel into two subspecies, Chamaeleo chamaeleon recticrista (CCR and C. c. musae (CCM. CCR mostly inhabits the Mediterranean climate (northern Israel, while CCM inhabits the sands of the north-western Negev Desert (southern Israel. AFLP analysis of 94 geographically well dispersed specimens indicated moderate genetic differentiation (PhiPT = 0.097, consistent with the classical division into the two subspecies, CCR and CCM. In contrast, sequence analysis of a 637 bp coding mitochondrial DNA (mtDNA fragment revealed two distinct phylogenetic clusters which were not consistent with the morphological division: one mtDNA cluster consisted of CCR specimens collected in regions northern of the Jezreel Valley and another mtDNA cluster harboring specimens pertaining to both the CCR and CCM subspecies but collected southern of the Jezreel Valley. AMOVA indicated clear mtDNA differentiation between specimens collected northern and southern to the Jezreel Valley (PhiPT = 0.79, which was further supported by a very low coalescent-based estimate of effective migration rates. Whole chameleon mtDNA sequencing (∼17,400 bp generated from 11 well dispersed geographic locations revealed 325 mutations sharply differentiating the two mtDNA clusters, suggesting a long allopatric history further supported by BEAST. This separation correlated temporally with the existence of an at least 1 million year old marine barrier at the Jezreel Valley exactly where the mtDNA clusters meet. We discuss possible involvement of gender-dependent life history differences in maintaining such mtDNA genetic differentiation and suggest that it reflects (ancient local adaptation to mitochondrial-related traits.

The importance of studying inherited hematological disorders in ancient Anatolian populations

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Yeşim Doğan Alakoç

2011-12-01

Full Text Available Before analysis of DNA from ancient remains was possible, anthropologists studied evolution and migration patterns using data obtained from population genetic studies on modern populations combined with data obtained from morphological evaluations of ancient remains. Currently, DNA analysis of ancient populations is making a valuable contribution to these efforts. Researchers that perform ancient DNA analysis prefer to study polymorphisms on the Y chromosome or mitochondrial DNA because the results are easier to statistically evaluate. To evaluate polymorphisms on diploid genomes, which are more informative, only mutations that have been extensively examined in modern populations should be chosen. The most extensively evaluated mutations are those related to prevalent inherited disorders. As such, beta-thalassemia, sickle cell anemia, FVL mutation of globin and the factor V genes are good candidates for DNA studies in ancient populations. These mutations are common in Anatolia, host to many civilizations since the Paleolithic period. This history makes Anatolia a good place for conducting research that could enhance our understanding of human evolution and migration patterns.

Chromium isotopes in carbonates — A tracer for climate change and for reconstructing the redox state of ancient seawater

DEFF Research Database (Denmark)

Frei, Robert; Gaucher, Claudio; Døssing, Lasse Nørbye

2011-01-01

Strontium and carbon isotopes of marine carbonates are routinely applied for chemostratigraphic cross correlations of time-equivalent sedimentary sequences and for calibration of the compositional evolution of seawater throughout Earth's history, mainly for the purpose of reconstructing ancient c...

Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

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Ahmed, Engy; Parducci, Laura; Unneberg, Per; Ågren, Rasmus; Schenk, Frederik; Rattray, Jayne E.; Han, Lu; Muschitiello, Francesco; Pedersen, Mikkel W.; Smittenberg, Rienk H.; Yamoah, Kweku Afrifa; Slotte, Tanja; Wohlfarth, Barbara

2018-02-01

The Lateglacial/early Holocene sediments from the ancient lake at Hässeldala Port, southern Sweden provide an important archive for the environmental and climatic shifts at the end of the last ice age and the transition into the present Interglacial. The existing multi-proxy data set highlights the complex interplay of physical and ecological changes in response to climatic shifts and lake status changes. Yet, it remains unclear how microorganisms, such as Archaea, which do not leave microscopic features in the sedimentary record, were affected by these climatic shifts. Here we present the metagenomic data set of Hässeldala Port with a special focus on the abundance and biodiversity of Archaea. This allows reconstructing for the first time the temporal succession of major Archaea groups between 13.9 and 10.8 ka BP by using ancient environmental DNA metagenomics and fossil archaeal cell membrane lipids. We then evaluate to which extent these findings reflect physical changes of the lake system, due to changes in lake-water summer temperature and seasonal lake-ice cover. We show that variations in archaeal composition and diversity were related to a variety of factors (e.g., changes in lake water temperature, duration of lake ice cover, rapid sediment infilling), which influenced bottom water conditions and the sediment-water interface. Methanogenic Archaea dominated during the Allerød and Younger Dryas pollen zones, when the ancient lake was likely stratified and anoxic for large parts of the year. The increase in archaeal diversity at the Younger Dryas/Holocene transition is explained by sediment infilling and formation of a mire/peatbog.

Ancient DNA in historical parchments - identifying a procedure for extraction and amplification of genetic material.

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Lech, T

2016-05-06

Historical parchments in the form of documents, manuscripts, books, or letters, make up a large portion of cultural heritage collections. Their priceless historical value is associated with not only their content, but also the information hidden in the DNA deposited on them. Analyses of ancient DNA (aDNA) retrieved from parchments can be used in various investigations, including, but not limited to, studying their authentication, tracing the development of the culture, diplomacy, and technology, as well as obtaining information on the usage and domestication of animals. This article proposes and verifies a procedure for aDNA recovery from historical parchments and its appropriate preparation for further analyses. This study involved experimental selection of an aDNA extraction method with the highest efficiency and quality of extracted genetic material, from among the multi-stage phenol-chloroform extraction methods, and the modern, column-based techniques that use selective DNA-binding membranes. Moreover, current techniques to amplify entire genetic material were questioned, and the possibility of using mitochondrial DNA for species identification was analyzed. The usefulness of the proposed procedure was successfully confirmed in identification tests of historical parchments dating back to the 13-16th century AD.

Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses

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Lira, Jaime; Linderholm, Anna; Olaria, Carmen

2010-01-01

Iberian horses supports this suggestion. To test this hypothesis, we analysed mitochondrial DNA from 22 ancient Iberian horse remains belonging to the Neolithic, the Bronze Age and the Middle Ages, against previously published sequences. Only the medieval Iberian sequence appeared in the D1 group...... wild mares during an early Iberian domestication or restocking event, whereas the D1 group probably was introduced into Iberia in later historical times....

Pre-Columbian population dynamics in coastal southern Peru: A diachronic investigation of mtDNA patterns in the Palpa region by ancient DNA analysis.

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Fehren-Schmitz, Lars; Reindel, Markus; Cagigao, Elsa Tomasto; Hummel, Susanne; Herrmann, Bernd

2010-02-01

Alternative models have been proposed to explain the formation and decline of the south Peruvian Nasca culture, ranging from migration or invasion to autochthonous development and ecological crisis. To reveal to what extent population dynamic processes accounted for cultural development in the Nasca mainland, or were influenced by them, we analyzed ancient mitochondrial DNA of 218 individuals, originating from chronologically successive archaeological sites in the Palpa region, the Paracas Peninsula, and the Andean highlands in southern Peru. The sampling strategy allowed a diachronic analysis in a time frame from approximately 800 BC to 800 AD. Mitochondrial coding region polymorphisms were successfully analyzed and replicated for 130 individuals and control region sequences (np 16021-16408) for 104 individuals to determine Native American mitochondrial DNA haplogroups and haplotypes. The results were compared with ancient and contemporary Peruvian populations to reveal genetic relations of the archaeological samples. Frequency data and statistics show clear proximity of the Nasca populations to the populations of the preceding Paracas culture from Palpa and the Peninsula, and suggest, along with archaeological data, that the Nasca culture developed autochthonously in the Rio Grande drainage. Furthermore, the influence of changes in socioeconomic complexity in the Palpa area on the genetic diversity of the local population could be observed. In all, a strong genetic affinity between pre-Columbian coastal populations from southern Peru could be determined, together with a significant differentiation from ancient highland and all present-day Peruvian reference populations, best shown in the differential distribution of mitochondrial haplogroups. 2009 Wiley-Liss, Inc.

Brief communication: Ancient nuclear DNA and kinship analysis: the case of a medieval burial in San Esteban Church in Cuellar (Segovia, Central Spain).

Science.gov (United States)

Gamba, Cristina; Fernández, Eva; Tirado, Mirian; Pastor, Francisco; Arroyo-Pardo, Eduardo

2011-03-01

The aim of this work was to investigate a very common situation in the archaeological and anthropological context: the study of a burial site containing several individuals, probably related genetically, using ancient DNA techniques. We used available ancient DNA and forensic protocols to obtain reliable results on archaeological material. The results also enabled molecular sex determination to be compared with osteological data. Specifically, a modified ancient DNA extraction method combined with the amplification of nuclear markers with the AmpFlSTR®MiniFiler™ kit(Applied Biosystems) was used. Seven medieval individuals buried in four niches dated in the 15th Century at San Esteban Church in Cuellar (Segovia, Central Spain) were analyzed by the proposed method, and four of seven provided complete autosomal short tandem repeat (STRs) profiles. Kinship analyses comprising paternity and sibship relations were carried out with pedigree-specific software used in forensic casework. A 99.98% paternity probability was established between two individuals, although lower percentages (68%) were obtained in other cases, and some hypothetical kinship relations were excluded. The overall results could eventually provide evidence for reconstructing the historical record. Copyright © 2010 Wiley-Liss, Inc.

STRONTIUM PRECIPITATION

Science.gov (United States)

McKenzie, T.R.

1960-09-13

A process is given for improving the precipitation of strontium from an aqueous phosphoric-acid-containing solution with nickel or cobalt ferrocyanide by simultaneously precipitating strontium or calcium phosphate. This is accomplished by adding to the ferrocyanide-containing solution calcium or strontium nitrate in a quantity to yield a concentration of from 0.004 to 0.03 and adjusting the pH of the solution to a value of above 8.

Increased mitochondrial DNA diversity in ancient Columbia River basin Chinook salmon Oncorhynchus tshawytscha.

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Bobbi M Johnson

Full Text Available The Columbia River and its tributaries provide essential spawning and rearing habitat for many salmonid species, including Chinook salmon (Oncorhynchus tshawytscha. Chinook salmon were historically abundant throughout the basin and Native Americans in the region relied heavily on these fish for thousands of years. Following the arrival of Europeans in the 1800s, salmon in the basin experienced broad declines linked to overfishing, water diversion projects, habitat destruction, connectivity reduction, introgression with hatchery-origin fish, and hydropower development. Despite historical abundance, many native salmonids are now at risk of extinction. Research and management related to Chinook salmon is usually explored under what are termed "the four H's": habitat, harvest, hatcheries, and hydropower; here we explore a fifth H, history. Patterns of prehistoric and contemporary mitochondrial DNA variation from Chinook salmon were analyzed to characterize and compare population genetic diversity prior to recent alterations and, thus, elucidate a deeper history for this species. A total of 346 ancient and 366 contemporary samples were processed during this study. Species was determined for 130 of the ancient samples and control region haplotypes of 84 of these were sequenced. Diversity estimates from these 84 ancient Chinook salmon were compared to 379 contemporary samples. Our analysis provides the first direct measure of reduced genetic diversity for Chinook salmon from the ancient to the contemporary period, as measured both in direct loss of mitochondrial haplotypes and reductions in haplotype and nucleotide diversity. However, these losses do not appear equal across the basin, with higher losses of diversity in the mid-Columbia than in the Snake subbasin. The results are unexpected, as the two groups were predicted to share a common history as parts of the larger Columbia River Basin, and instead indicate that Chinook salmon in these subbasins

Illuminating the evolution of equids and rodents with next-generation sequencing of ancient specimens

DEFF Research Database (Denmark)

Mouatt, Julia Thidamarth Vilstrup

enrichment methods and the massive throughput and latest advances within DNA sequencing, the field of ancient DNA has flourished in later years. Those advances have even enabled the sequencing of complete genomes from the past, moving the field into genomic sciences. In this thesis we have used these latest......The sequencing of ancient DNA provides perspectives on the genetic history of past populations and extinct species. However, ancient DNA research presents specific limitations mostly due to DNA survival, damage and contamination. Yet with stringent laboratory procedures, the sensitivity of target...... developments within ancient DNA research, including target enrichment capture and Next-Generation Sequencing, to address a range of evolutionary questions related to two major mammalian groups, equids and rodents. In particular we have resolved phylogenetic relationships within equids using complete mitochond...

The characterization of Helicobacter pylori DNA associated with ancient human remains recovered from a Canadian glacier.

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Treena Swanston

2011-02-01

Full Text Available Helicobacter pylori is a gram-negative bacterium that colonizes the stomach of nearly half of the world's population. Genotypic characterization of H. pylori strains involves the analysis of virulence-associated genes, such as vacA, which has multiple alleles. Previous phylogenetic analyses have revealed a connection between modern H. pylori strains and the movement of ancient human populations. In this study, H. pylori DNA was amplified from the stomach tissue of the Kwäday Dän Ts'ìnchi individual. This ancient individual was recovered from the Samuel Glacier in Tatshenshini-Alsek Park, British Columbia, Canada on the traditional territory of the Champagne and Aishihik First Nations and radiocarbon dated to a timeframe of approximately AD 1670 to 1850. This is the first ancient H. pylori strain to be characterized with vacA sequence data. The Tatshenshini H. pylori strain has a potential hybrid vacA m2a/m1d middle (m region allele and a vacA s2 signal (s region allele. A vacA s2 allele is more commonly identified with Western strains, and this suggests that European strains were present in northwestern Canada during the ancient individual's time. Phylogenetic analysis indicated that the vacA m1d region of the ancient strain clusters with previously published novel Native American strains that are closely related to Asian strains. This indicates a past connection between the Kwäday Dän Ts'ìnchi individual and the ancestors who arrived in the New World thousands of years ago.

Nuclear counterparts of the cytoplasmic mitochondrial 12S rRNA gene: a problem of ancient DNA and molecular phylogenies.

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van der Kuyl, A C; Kuiken, C L; Dekker, J T; Perizonius, W R; Goudsmit, J

1995-06-01

Monkey mummy bones and teeth originating from the North Saqqara Baboon Galleries (Egypt), soft tissue from a mummified baboon in a museum collection, and nineteenth/twentieth-century skin fragments from mangabeys were used for DNA extraction and PCR amplification of part of the mitochondrial 12S rRNA gene. Sequences aligning with the 12S rRNA gene were recovered but were only distantly related to contemporary monkey mitochondrial 12S rRNA sequences. However, many of these sequences were identical or closely related to human nuclear DNA sequences resembling mitochondrial 12S rRNA (isolated from a cell line depleted in mitochondria) and therefore have to be considered contamination. Subsequently in a separate study we were able to recover genuine mitochondrial 12S rRNA sequences from many extant species of nonhuman Old World primates and sequences closely resembling the human nuclear integrations. Analysis of all sequences by the neighbor-joining (NJ) method indicated that mitochondrial DNA sequences and their nuclear counterparts can be divided into two distinct clusters. One cluster contained all temporary cytoplasmic mitochondrial DNA sequences and approximately half of the monkey nuclear mitochondriallike sequences. A second cluster contained most human nuclear sequences and the other half of monkey nuclear sequences with a separate branch leading to human and gorilla mitochondrial and nuclear sequences. Sequences recovered from ancient materials were equally divided between the two clusters. These results constitute a warning for when working with ancient DNA or performing phylogenetic analysis using mitochondrial DNA as a target sequence: Nuclear counterparts of mitochondrial genes may lead to faulty interpretation of results.

Human evolution in Siberia: from frozen bodies to ancient DNA

Directory of Open Access Journals (Sweden)

Bouakaze Caroline

2010-01-01

Full Text Available Abstract Background The Yakuts contrast strikingly with other populations from Siberia due to their cattle- and horse-breeding economy as well as their Turkic language. On the basis of ethnological and linguistic criteria as well as population genetic studies, it has been assumed that they originated from South Siberian populations. However, many questions regarding the origins of this intriguing population still need to be clarified (e.g. the precise origin of paternal lineages and the admixture rate with indigenous populations. This study attempts to better understand the origins of the Yakuts by performing genetic analyses on 58 mummified frozen bodies dated from the 15th to the 19th century, excavated from Yakutia (Eastern Siberia. Results High quality data were obtained for the autosomal STRs, Y-chromosomal STRs and SNPs and mtDNA due to exceptional sample preservation. A comparison with the same markers on seven museum specimens excavated 3 to 15 years ago showed significant differences in DNA quantity and quality. Direct access to ancient genetic data from these molecular markers combined with the archaeological evidence, demographical studies and comparisons with 166 contemporary individuals from the same location as the frozen bodies helped us to clarify the microevolution of this intriguing population. Conclusion We were able to trace the origins of the male lineages to a small group of horse-riders from the Cis-Baïkal area. Furthermore, mtDNA data showed that intermarriages between the first settlers with Evenks women led to the establishment of genetic characteristics during the 15th century that are still observed today.

Unravelling the complexity of domestication: a case study using morphometrics and ancient DNA analyses of archaeological pigs from Romania

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Evin, Allowen; Flink, Linus Girdland; Bălăşescu, Adrian; Popovici, Dragomir; Andreescu, Radian; Bailey, Douglas; Mirea, Pavel; Lazăr, Cătălin; Boroneanţ, Adina; Bonsall, Clive; Vidarsdottir, Una Strand; Brehard, Stéphanie; Tresset, Anne; Cucchi, Thomas; Larson, Greger; Dobney, Keith

2015-01-01

Current evidence suggests that pigs were first domesticated in Eastern Anatolia during the ninth millennium cal BC before dispersing into Europe with Early Neolithic farmers from the beginning of the seventh millennium. Recent ancient DNA (aDNA) research also indicates the incorporation of European wild boar into domestic stock during the Neolithization process. In order to establish the timing of the arrival of domestic pigs into Europe, and to test hypotheses regarding the role European wild boar played in the domestication process, we combined a geometric morphometric analysis (allowing us to combine tooth size and shape) of 449 Romanian ancient teeth with aDNA analysis. Our results firstly substantiate claims that the first domestic pigs in Romania possessed the same mtDNA signatures found in Neolithic pigs in west and central Anatolia. Second, we identified a significant proportion of individuals with large molars whose tooth shape matched that of archaeological (likely) domestic pigs. These large ‘domestic shape’ specimens were present from the outset of the Romanian Neolithic (6100–5500 cal BC) through to later prehistory, suggesting a long history of admixture between introduced domestic pigs and local wild boar. Finally, we confirmed a turnover in mitochondrial lineages found in domestic pigs, possibly coincident with human migration into Anatolia and the Levant that occurred in later prehistory. PMID:25487340

King penguin population on Macquarie Island recovers ancient DNA diversity after heavy exploitation in historic times.

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Heupink, Tim H; van den Hoff, John; Lambert, David M

2012-08-23

Historically, king penguin populations on Macquarie Island have suffered greatly from human exploitation. Two large colonies on the island were drastically reduced to a single small colony as a result of harvesting for the blubber oil industry. However, recent conservation efforts have resulted in the king penguin population expanding in numbers and range to recolonize previous as well as new sites. Ancient DNA methods were used to estimate past genetic diversity and combined with studies of modern populations, we are now able to compare past levels of variation with extant populations on northern Macquarie Island. The ancient and modern populations are closely related and show a similar level of genetic diversity. These results suggest that the king penguin population has recovered past genetic diversity in just 80 years owing to conservation efforts, despite having seen the brink of extinction.

Ancient DNA Reveals That the Genetic Structure of the Northern Han Chinese Was Shaped Prior to 3,000 Years Ago

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Zhang, Quan-Chao; Li, Hong-Jie; Cui, Ying-Qiu; Xu, Zhi; Jin, Li; Zhou, Hui; Zhu, Hong

2015-01-01

The Han Chinese are the largest ethnic group in the world, and their origins, development, and expansion are complex. Many genetic studies have shown that Han Chinese can be divided into two distinct groups: northern Han Chinese and southern Han Chinese. The genetic history of the southern Han Chinese has been well studied. However, the genetic history of the northern Han Chinese is still obscure. In order to gain insight into the genetic history of the northern Han Chinese, 89 human remains were sampled from the Hengbei site which is located in the Central Plain and dates back to a key transitional period during the rise of the Han Chinese (approximately 3,000 years ago). We used 64 authentic mtDNA data obtained in this study, 27 Y chromosome SNP data profiles from previously studied Hengbei samples, and genetic datasets of the current Chinese populations and two ancient northern Chinese populations to analyze the relationship between the ancient people of Hengbei and present-day northern Han Chinese. We used a wide range of population genetic analyses, including principal component analyses, shared mtDNA haplotype analyses, and geographic mapping of maternal genetic distances. The results show that the ancient people of Hengbei bore a strong genetic resemblance to present-day northern Han Chinese and were genetically distinct from other present-day Chinese populations and two ancient populations. These findings suggest that the genetic structure of northern Han Chinese was already shaped 3,000 years ago in the Central Plain area. PMID:25938511

Biomolecular identification of ancient Mycobacterium tuberculosis complex DNA in human remains from Britain and continental Europe.

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Müller, Romy; Roberts, Charlotte A; Brown, Terence A

2014-02-01

Tuberculosis is known to have afflicted humans throughout history and re-emerged towards the end of the 20th century, to an extent that it was declared a global emergency in 1993. The aim of this study was to apply a rigorous analytical regime to the detection of Mycobacterium tuberculosis complex (MTBC) DNA in 77 bone and tooth samples from 70 individuals from Britain and continental Europe, spanning the 1st-19th centuries AD. We performed the work in dedicated ancient DNA facilities designed to prevent all types of modern contamination, we checked the authenticity of all products obtained by the polymerase chain reaction, and we based our conclusions on up to four replicate experiments for each sample, some carried out in an independent laboratory. We identified 12 samples that, according to our strict criteria, gave definite evidence for the presence of MTBC DNA, and another 22 that we classified as "probable" or "possible." None of the definite samples came from vertebrae displaying lesions associated with TB. Instead, eight were from ribs displaying visceral new bone formation, one was a tooth from a skeleton with rib lesions, one was taken from a skeleton with endocranial lesions, one from an individual with lesions to the sacrum and sacroiliac joint and the last was from an individual with no lesions indicative of TB or possible TB. Our results add to information on the past temporal and geographical distribution of TB and affirm the suitability of ribs for studying ancient TB. Copyright © 2013 Wiley Periodicals, Inc.

Human telomeric G-quadruplex formation and highly selective fluorescence detection of toxic strontium ions.

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Qu, Konggang; Zhao, Chuanqi; Ren, Jinsong; Qu, Xiaogang

2012-03-01

Strontium ions play important roles in biological systems. The inhalation of strontium can cause severe respiratory difficulties, anaphylactic reaction and extreme tachycardia. Strontium can replace calcium in organisms, inhibit normal calcium absorption and induce strontium "rickets" in childhood. Thus, the development of sensitive and selective methods for the determination of trace amounts of Sr(2+) in aqueous media is of considerable importance for environmental and human health protection. A number of methodologies, such as X-ray energy dispersive spectrometry, inductively coupled argon plasma atomic emission spectroscopy (ICP-AES), atomic absorption spectrometry (AAS) and instrumental thermal neutron activation analysis, have been reported. However, these methods are somewhat complex, costly, time consuming and, especially, need special instruments. Thus, the design of convenient and inexpensive approaches for the sensitive and selective detection of Sr(2+) with rapid, easy manipulation is in ever-increasing demand. To the best of our knowledge, using DNA conformational change to detect Sr(2+) has not yet been reported. Herein we utilized thiazole orange (TO) as a signal reporter to devise a simple Sr(2+) detection assay based on Sr(2+) induced human telomeric DNA conformational change in the presence of SWNTs. The limit of detection is 10 nM Sr(2+) (0.87 μg L(-1)), far below 4 mg L(-1), the U.S. Federal threshold in drinking water defined by the U.S. EPA.

Ligation bias in Illumina next-generation DNA libraries

DEFF Research Database (Denmark)

Seguin-Orlando, Andaine; Schubert, Mikkel; Clary, Joel

2013-01-01

Ancient DNA extracts consist of a mixture of endogenous molecules and contaminant DNA templates, often originating from environmental microbes. These two populations of templates exhibit different chemical characteristics, with the former showing depurination and cytosine deamination by-products,...... for authenticating ancient sequence data. Consequently, we show that models adequate for estimating post-mortem DNA damage levels must be robust to the molecular tools used for building ancient DNA libraries.......Ancient DNA extracts consist of a mixture of endogenous molecules and contaminant DNA templates, often originating from environmental microbes. These two populations of templates exhibit different chemical characteristics, with the former showing depurination and cytosine deamination by......-products, resulting from post-mortem DNA damage. Such chemical modifications can interfere with the molecular tools used for building second-generation DNA libraries, and limit our ability to fully characterize the true complexity of ancient DNA extracts. In this study, we first use fresh DNA extracts to demonstrate...

Multiplexed SNP Typing of Ancient DNA Clarifies the Origin of Andaman mtDNA Haplogroups amongst South Asian Tribal Populations

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Endicott, Phillip; Metspalu, Mait; Stringer, Chris; Macaulay, Vincent; Cooper, Alan; Sanchez, Juan J.

2006-01-01

The issue of errors in genetic data sets is of growing concern, particularly in population genetics where whole genome mtDNA sequence data is coming under increased scrutiny. Multiplexed PCR reactions, combined with SNP typing, are currently under-exploited in this context, but have the potential to genotype whole populations rapidly and accurately, significantly reducing the amount of errors appearing in published data sets. To show the sensitivity of this technique for screening mtDNA genomic sequence data, 20 historic samples of the enigmatic Andaman Islanders and 12 modern samples from three Indian tribal populations (Chenchu, Lambadi and Lodha) were genotyped for 20 coding region sites after provisional haplogroup assignment with control region sequences. The genotype data from the historic samples significantly revise the topologies for the Andaman M31 and M32 mtDNA lineages by rectifying conflicts in published data sets. The new Indian data extend the distribution of the M31a lineage to South Asia, challenging previous interpretations of mtDNA phylogeography. This genetic connection between the ancestors of the Andamanese and South Asian tribal groups ∼30 kya has important implications for the debate concerning migration routes and settlement patterns of humans leaving Africa during the late Pleistocene, and indicates the need for more detailed genotyping strategies. The methodology serves as a low-cost, high-throughput model for the production and authentication of data from modern or ancient DNA, and demonstrates the value of museum collections as important records of human genetic diversity. PMID:17218991

Simulating the Transfer of Strontium-90 from Soil to Leafy Vegetables by Using Strontium-88.

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Kuke, Ding; Shujuan, Liu; Yingxue, He; Dong, Yan; Fengshou, Zhang; Shuifeng, Wang; Jinghua, Guo; Wei, Zhang; Xin, Wang; Xiaoyan, Jiang

The transfer, from soil to Chinese cabbage and spinach, of radioactive strontium-90 released as a result of accidents in nuclear power stations was studied using a stable isotope of strontium, namely nuclide strontium-88 ( 88 Sr). The study led to an experimental model for assessing the hazard of radionuclide strontium-90 ( 90 Sr) entering the food chain and for predicting the risk to food safety. Chinese cabbage and spinach were grown in pots in a greenhouse and irrigated with deionized water containing known quantities of strontium. Based on the strontium content of that water, the plants were divided into five groups (treatments) and strontium content of the soil, and 30-day-old plants were determined by inductively coupled plasma atomic emission spectroscopy instrument (ICP-AES). Data on the strontium content of soil and plants enabled the development of a model using MATLAB, a mathematical software package, which included curve fitting and problem solving using regression equations and differential equations. Although strontium curves for leaves, stems, and roots of Chinese cabbage were not exactly the same, all showed a non-linear increase when compared with the increase in the content of strontium in soil. Strontium curves for leaves, stems, and roots of spinach were very similar and showed an initial increase followed by a decrease. Strontium concentrations in both Chinese cabbage and spinach were initially related to the concentrations of sodium and sulfur, the next two relevant nuclides being calcium and magnesium. The relationship between calcium and strontium in Chinese cabbage was different from that in spinach. By using 88 Sr to simulate the transfer of radionuclide 90 Sr from soil to a crop, the relevant data required to deal with accidental release of strontium can be obtained using a fitting curve and regression equations, thereby providing some experimental basis for evaluating the potential hazards posed by such accidents to the food chain.

Integrating archaeology and ancient DNA analysis to address invasive species colonization in the Gulf of Alaska.

Science.gov (United States)

West, Catherine; Hofman, Courtney A; Ebbert, Steve; Martin, John; Shirazi, Sabrina; Dunning, Samantha; Maldonado, Jesus E

2017-10-01

The intentional and unintentional movement of plants and animals by humans has transformed ecosystems and landscapes globally. Assessing when and how a species was introduced are central to managing these transformed landscapes, particularly in island environments. In the Gulf of Alaska, there is considerable interest in the history of mammal introductions and rehabilitating Gulf of Alaska island environments by eradicating mammals classified as invasive species. The Arctic ground squirrel (Urocitellus parryii) is of concern because it affects vegetation and seabirds on Gulf of Alaska islands. This animal is assumed to have been introduced by historic settlers; however, ground squirrel remains in the prehistoric archaeological record of Chirikof Island, Alaska, challenge this timeline and suggest they colonized the islands long ago. We used 3 lines of evidence to address this problem: direct radiocarbon dating of archaeological squirrel remains; evidence of prehistoric human use of squirrels; and ancient DNA analysis of dated squirrel remains. Chirikof squirrels dated to at least 2000 years ago, and cut marks on squirrel bones suggested prehistoric use by people. Ancient squirrels also shared a mitochondrial haplotype with modern Chirikof squirrels. These results suggest that squirrels have been on Chirikof longer than previously assumed and that the current population of squirrels is closely related to the ancient population. Thus, it appears ground squirrels are not a recent, human-mediated introduction and may have colonized the island via a natural dispersal event or an ancient human translocation. © 2016 The Authors. Conservation Biology published by Wiley Periodicals, Inc. on behalf of Society for Conservation Biology.

Isotope exchange of strontium and molybdate ions in strontium polymolybdates

International Nuclear Information System (INIS)

Atun, G.

2002-01-01

The heterogeneous isotopic exchange reactions in strontium polymolybdates of Sr 2+ and MoO 4 2- ions in the strontium nitrate and sodium molybdate solutions have been studied using 90 Sr and 99 Mo as tracers. Electrometric methods have been used to study the compositions of strontium molybdates obtained by adding strontium chloride to a progressively acidified solution of sodium molybdate. It has been found that the exchange fraction increases with increasing chain length of strontium polymolybdate. The exchange equilibrium constant (K ex ) has been calculated between 298 and 348 K as well as ΔG deg, ΔH deg and ΔS deg. The results indicate that Sr 2+ cations have a much higher affinity for exchangers than MoO 4 2- anions. By fitting the data to the Dubinin-Radushkevich (D-R) isotherm it has been shown that the exchange capacity (X m ) for both ions is affected by the ion adsorption process at low temperatures and by the ion exchange process at high temperatures. At high concentrations, the recrystallization process contributes to on the cation exchange but is ineffective on the anion exchange mechanism. (author)

Identifying source populations for the reintroduction of the Eurasian beaver, Castor fiber L. 1758, into Britain: evidence from ancient DNA.

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Marr, Melissa M; Brace, Selina; Schreve, Danielle C; Barnes, Ian

2018-02-09

Establishing true phylogenetic relationships between populations is a critical consideration when sourcing individuals for translocation. This presents huge difficulties with threatened and endangered species that have become extirpated from large areas of their former range. We utilise ancient DNA (aDNA) to reconstruct the phylogenetic relationships of a keystone species which has become extinct in Britain, the Eurasian beaver Castor fiber. We sequenced seventeen 492 bp partial tRNAPro and control region sequences from Late Pleistocene and Holocene age beavers and included these in network, demographic and genealogy analyses. The mode of postglacial population expansion from refugia was investigated by employing tests of neutrality and a pairwise mismatch distribution analysis. We found evidence of a pre-Late Glacial Maximum ancestor for the Western C. fiber clade which experienced a rapid demographic expansion during the terminal Pleistocene to early Holocene period. Ancient British beavers were found to originate from the Western phylogroup but showed no phylogenetic affinity to any one modern relict population over another. Instead, we find that they formed part of a large, continuous, pan-Western European clade that harbored little internal substructure. Our study highlights the utility of aDNA in reconstructing population histories of extirpated species which has real-world implications for conservation planning.

Revising the recent evolutionary history of equids using ancient DNA.

Science.gov (United States)

Orlando, Ludovic; Metcalf, Jessica L; Alberdi, Maria T; Telles-Antunes, Miguel; Bonjean, Dominique; Otte, Marcel; Martin, Fabiana; Eisenmann, Véra; Mashkour, Marjan; Morello, Flavia; Prado, Jose L; Salas-Gismondi, Rodolfo; Shockey, Bruce J; Wrinn, Patrick J; Vasil'ev, Sergei K; Ovodov, Nikolai D; Cherry, Michael I; Hopwood, Blair; Male, Dean; Austin, Jeremy J; Hänni, Catherine; Cooper, Alan

2009-12-22

The rich fossil record of the family Equidae (Mammalia: Perissodactyla) over the past 55 MY has made it an icon for the patterns and processes of macroevolution. Despite this, many aspects of equid phylogenetic relationships and taxonomy remain unresolved. Recent genetic analyses of extinct equids have revealed unexpected evolutionary patterns and a need for major revisions at the generic, subgeneric, and species levels. To investigate this issue we examine 35 ancient equid specimens from four geographic regions (South America, Europe, Southwest Asia, and South Africa), of which 22 delivered 87-688 bp of reproducible aDNA mitochondrial sequence. Phylogenetic analyses support a major revision of the recent evolutionary history of equids and reveal two new species, a South American hippidion and a descendant of a basal lineage potentially related to Middle Pleistocene equids. Sequences from specimens assigned to the giant extinct Cape zebra, Equus capensis, formed a separate clade within the modern plain zebra species, a phenotypicically plastic group that also included the extinct quagga. In addition, we revise the currently recognized extinction times for two hemione-related equid groups. However, it is apparent that the current dataset cannot solve all of the taxonomic and phylogenetic questions relevant to the evolution of Equus. In light of these findings, we propose a rapid DNA barcoding approach to evaluate the taxonomic status of the many Late Pleistocene fossil Equidae species that have been described from purely morphological analyses.

Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity.

Science.gov (United States)

Boessenkool, Sanne; McGlynn, Gayle; Epp, Laura S; Taylor, David; Pimentel, Manuel; Gizaw, Abel; Nemomissa, Sileshi; Brochmann, Christian; Popp, Magnus

2014-04-01

Conservation of biodiversity may in the future increasingly depend upon the availability of scientific information to set suitable restoration targets. In traditional paleoecology, sediment-based pollen provides a means to define preanthropogenic impact conditions, but problems in establishing the exact provenance and ecologically meaningful levels of taxonomic resolution of the evidence are limiting. We explored the extent to which the use of sedimentary ancient DNA (sedaDNA) may complement pollen data in reconstructing past alpine environments in the tropics. We constructed a record of afro-alpine plants retrieved from DNA preserved in sediment cores from 2 volcanic crater sites in the Albertine Rift, eastern Africa. The record extended well beyond the onset of substantial anthropogenic effects on tropical mountains. To ensure high-quality taxonomic inference from the sedaDNA sequences, we built an extensive DNA reference library covering the majority of the afro-alpine flora, by sequencing DNA from taxonomically verified specimens. Comparisons with pollen records from the same sediment cores showed that plant diversity recovered with sedaDNA improved vegetation reconstructions based on pollen records by revealing both additional taxa and providing increased taxonomic resolution. Furthermore, combining the 2 measures assisted in distinguishing vegetation change at different geographic scales; sedaDNA almost exclusively reflects local vegetation, whereas pollen can potentially originate from a wide area that in highlands in particular can span several ecozones. Our results suggest that sedaDNA may provide information on restoration targets and the nature and magnitude of human-induced environmental changes, including in high conservation priority, biodiversity hotspots, where understanding of preanthropogenic impact (or reference) conditions is highly limited. © 2013 Society for Conservation Biology.

High-resolution stratigraphy with strontium isotopes.

Science.gov (United States)

Depaolo, D J; Ingram, B L

1985-02-22

The isotopic ratio of strontium-87 to strontium-86 shows no detectable variation in present-day ocean water but changes slowly over millions of years. The strontium contained in carbonate shells of marine organisms records the ratio of strontium-87 to strontium-86 of the oceans at the time that the shells form. Sedimentary rocks composed of accumulated fossil carbonate shells can be dated and correlated with the use of high precision measurements of the ratio of strontium-87 to strontium-86 with a resolution that is similar to that of other techniques used in age correlation. This method may prove valuable for many geological, paleontological, paleooceanographic, and geochemical problems.

Diversity and survivability of microbial community in ancient permafrost sediment of northeast Siberia

Science.gov (United States)

Liang, R.; Lau, M.; Vishnivetskaya, T. A.; Lloyd, K. G.; Pfiffner, S. M.; Rivkina, E.; Onstott, T. C.

2017-12-01

The prevalence of microorganisms in frozen permafrost has been well documented in ancient sediment up to several million years old. However, the long term survivability and metabolic activity of microbes over geological timespans remain underexplored. Siberian permafrost sediment was collected at various depths (1.4m, 11.8 m and 24.8m) to represent a wide range of geological time from thousands to millions of years. Extracellular (eDNA) and intracellular DNA (iDNA) was simultaneously recovered for sequencing to characterize the potentially extinct and extant microbial community. Additionally, aspartic acid racemization assay (D/L Asp) was used to infer the metabolic activity of microbes in ancient permafrost. As compared with the young sample (1.4m), DNA yield and content of aspartic acid dramatically decreased in old samples (11.8m and 24.8m). However, D/L Asp and eDNA/iDNA significantly increased with the geological age. Such findings suggested that ancient microbiomes might be subjected to racemization or even DNA/proteins degradation at subzero temperature over the wide geological time scale. Preliminary characterization of microbial community indicated that the majority of sequences in old samples were identified as bacteria and only a small fraction was identified as archaea from the iDNA pool. While the eDNA and iDNA fractions shared similar dominant taxa at phylum level, the relative abundance of Proteobacteria in eDNA library was much higher than iDNA. By contrast, the phylum affiliated with Firmicutes was more numerically abundant in the iDNA fraction. More dramatic differences were observed between eDNA and iDNA library at lower taxonomic levels. Particularly, the microbial lineages affiliated with the genera Methanoregula, Desulfosporosinus and Syntrophomonas were only detected in the iDNA library. Such taxonomic difference between the relic eDNA and iDNA suggested that numerous species become locally "extinct" whereas many other taxa might survive in

Rubidium-strontium method

International Nuclear Information System (INIS)

Dubansky, A.

1980-01-01

The rubidium-strontium geological dating method is based on the determination of the Rb and Sr isotope ratio in rocks, mainly using mass spectrometry. The method is only practical for silicate minerals and rocks, potassium feldspars and slates. Also described is the rubidium-strontium isochrone method. This, however, requires a significant amount of experimental data and an analysis of large quantities of samples, often of the order of tons. The results are tabulated of rubidium-strontium dating of geological formations in the Czech Socialist Republic. (M.S.)

Kinetics of isotopic exchange between strontium polymolybdate and strontium ions in aqueous solution

International Nuclear Information System (INIS)

Atun, Gulten; Bilgin, Binay; Kilislioglu, Ayben

2002-01-01

A heterogeneous isotopic exchange reaction of strontium polymolybdate in strontium chloride solution was studied using 90 Sr as a tracer. The effects of low and high strontium chloride concentration on the rate and mechanism of the isotopic exchange reaction were investigated. It was found that, at high concentrations, the rate is independent of strontium concentration, but, at low concentrations, the rate is proportional to the strontium concentration. These results support a hypothesis that, at low concentrations, the rate is controlled by film diffusion, whereas at high concentrations it is controlled by particle diffusion. Experiments were performed at 293, 303 and 313 K. Activation energy of isotopic exchange reaction and thermodynamic parameters ΔH*, ΔS*, and ΔG* were calculated using the Arrhenius and Eyring equations. The results also indicated that recrystallization is a predominant factor in the present exchange reaction

Kinetics of isotopic exchange between strontium polymolybdate and strontium ions in aqueous solution

Energy Technology Data Exchange (ETDEWEB)

Atun, Gulten E-mail: gultena@istanbul.edu.tr; Bilgin, Binay; Kilislioglu, Ayben

2002-06-01

A heterogeneous isotopic exchange reaction of strontium polymolybdate in strontium chloride solution was studied using {sup 90}Sr as a tracer. The effects of low and high strontium chloride concentration on the rate and mechanism of the isotopic exchange reaction were investigated. It was found that, at high concentrations, the rate is independent of strontium concentration, but, at low concentrations, the rate is proportional to the strontium concentration. These results support a hypothesis that, at low concentrations, the rate is controlled by film diffusion, whereas at high concentrations it is controlled by particle diffusion. Experiments were performed at 293, 303 and 313 K. Activation energy of isotopic exchange reaction and thermodynamic parameters {delta}H*, {delta}S*, and {delta}G* were calculated using the Arrhenius and Eyring equations. The results also indicated that recrystallization is a predominant factor in the present exchange reaction.

Ancient DNA analyses reveal contrasting phylogeographic patterns amongst kiwi (Apteryx spp. and a recently extinct lineage of spotted kiwi.

Directory of Open Access Journals (Sweden)

Lara D Shepherd

Full Text Available The little spotted kiwi (Apteryx owenii is a flightless ratite formerly found throughout New Zealand but now greatly reduced in distribution. Previous phylogeographic studies of the related brown kiwi (A. mantelli, A. rowi and A. australis, with which little spotted kiwi was once sympatric, revealed extremely high levels of genetic structuring, with mitochondrial DNA haplotypes often restricted to populations. We surveyed genetic variation throughout the present and pre-human range of little spotted kiwi by obtaining mitochondrial DNA sequences from contemporary and ancient samples. Little spotted kiwi and great spotted kiwi (A. haastii formed a monophyletic clade sister to brown kiwi. Ancient samples of little spotted kiwi from the northern North Island, where it is now extinct, formed a lineage that was distinct from remaining little spotted kiwi and great spotted kiwi lineages, potentially indicating unrecognized taxonomic diversity. Overall, little spotted kiwi exhibited much lower levels of genetic diversity and structuring than brown kiwi, particularly through the South Island. Our results also indicate that little spotted kiwi (or at least hybrids involving this species survived on the South Island mainland until more recently than previously thought.

Measurement of strontium-89 and strontium-90 in environmental waters. A tentative reference method

International Nuclear Information System (INIS)

1976-03-01

A tentative reference method for the measurement of 89 Sr and 90 Sr in environmental waters is described. Samples of environmental water sources are collected, preserved with acid-strontium carrier, and analyzed for 89 Sr and/or 90 Sr. The isotopes are separated from the sample water by precipitating with stable strontium carrier as carbonate. The strontium carbonate is dissolved, 90 Sr separated, the strontium reprecipitated as carbonate, filtered, and counted for the combined 89 Sr and 90 Sr activity. The 90 y is allowed to grow in from the 90 y activity; the strontium carbonate is redissolved; the 90 y is separated, precipitated, and counted for the 90 Sr determination. The 89 Sr activity is then determined by difference of the total 89 Sr and 90 y and the separate 90 Sr activities. Recoveries are determined from the added and found (recovered) strontium carrier. Counting efficiencies are determined with prepared standard reference samples. Results are reported in pCi/liter

Investigation of ancient DNA from Western Siberia and the Sargat culture.

Science.gov (United States)

Bennett, Casey C; Kaestle, Frederika A

2010-04-01

Mitochondrial DNA from 14 archaeological samples at the Ural State University in Yekaterinburg, Russia, was extracted to test the feasibility of ancient DNA work on their collection. These samples come from a number of sites that fall into two groupings. Seven samples are from three sites, dating to the 8th-12th century AD, that belong to a northern group of what are thought to be Ugrians, who lived along the Ural Mountains in northwestern Siberia. The remaining seven samples are from two sites that belong to a southern group representing the Sargat culture, dating between roughly the 5th century BC and the 5th century AD, from southwestern Siberia near the Ural Mountains and the present-day Kazakhstan border. The samples are derived from several burial types, including kurgan burials. They also represent a number of different skeletal elements and a range of observed preservation. The northern sites repeatedly failed to amplify after multiple extraction and amplification attempts, but the samples from the southern sites were successfully extracted and amplified. The sequences obtained from the southern sites support the hypothesis that the Sargat culture was a potential zone of intermixture between native Ugrian and/or Siberian populations and steppe peoples from the south, possibly early Iranian or Indo-Iranian, which has been previously suggested by archaeological analysis.

Calcium and Strontium in Swedish Waters and Fish, and Accumulation of Strontium-90

Energy Technology Data Exchange (ETDEWEB)

Agnedal, P O

1966-04-15

The purpose of this study has been to investigate the correlation between calcium and strontium in fish in relation to the concentration of these elements in the water. An investigation of the uptake of strontium-90 has also been made and permissible levels of strontium-90 in the water is calculated based upon the uptake in fish muscle tissues. Lakes with calcium concentrations between 2 - 63 mg/l have been studied and samples from the Baltic coastal water are also included. Three fish species are studied, viz. pike (Esox lucius (L.)), perch (Perca fluviatilis (L.)) and roach (Leuciscus rutilus (L.)). Bones, muscle tissues and skin + scales have been analysed. Strontium-90 measurements have been made showing an increase in both water and fish. Calculations show that in water with about 2 mg Ca/l a 10-fold increase of the existing strontium-90 level might give strontium-90 concentrations in fish muscle tissues close to what is permissible. In lakes with calcium concentrations 20 - 40 mg/l the permissible levels for drinking water will be exceeded before the fish consumption would have to be restricted.

Calcium and Strontium in Swedish Waters and Fish, and Accumulation of Strontium-90

International Nuclear Information System (INIS)

Agnedal, P.O.

1966-04-01

The purpose of this study has been to investigate the correlation between calcium and strontium in fish in relation to the concentration of these elements in the water. An investigation of the uptake of strontium-90 has also been made and permissible levels of strontium-90 in the water is calculated based upon the uptake in fish muscle tissues. Lakes with calcium concentrations between 2 - 63 mg/l have been studied and samples from the Baltic coastal water are also included. Three fish species are studied, viz. pike (Esox lucius (L.)), perch (Perca fluviatilis (L.)) and roach (Leuciscus rutilus (L.)). Bones, muscle tissues and skin + scales have been analysed. Strontium-90 measurements have been made showing an increase in both water and fish. Calculations show that in water with about 2 mg Ca/l a 10-fold increase of the existing strontium-90 level might give strontium-90 concentrations in fish muscle tissues close to what is permissible. In lakes with calcium concentrations 20 - 40 mg/l the permissible levels for drinking water will be exceeded before the fish consumption would have to be restricted

Low Mitochondrial DNA Diversity in an Ancient Population from China: Insight into Social Organization at the Fujia Site.

Science.gov (United States)

Dong, Yu; Li, Chunxiang; Luan, Fengshi; Li, Zhenguang; Li, Hongjie; Cui, Yinqiu; Zhou, Hui; Malhi, Ripan S

2015-01-01

To gain insight into the social organization of a population associated with the Dawenkou period, we performed ancient DNA analysis of 18 individuals from human remains from the Fujia site in Shandong Province, China. Directly radiocarbon dated to 4800-4500 cal BP, the Fujia site is assumed to be associated with a transitional phase from matrilineal clans to patrilineal monogamous families. Our results reveal a low mitochondrial DNA diversity from the site and population. Combined with Y chromosome data, the pattern observed at the Fujia site is most consistent with a matrilineal community. The patterns also suggest that the bond of marriage was de-emphasized compared with the bonds of descent at Fujia.

Ancient DNA from South-East Europe Reveals Different Events during Early and Middle Neolithic Influencing the European Genetic Heritage.

Science.gov (United States)

Hervella, Montserrat; Rotea, Mihai; Izagirre, Neskuts; Constantinescu, Mihai; Alonso, Santos; Ioana, Mihai; Lazăr, Cătălin; Ridiche, Florin; Soficaru, Andrei Dorian; Netea, Mihai G; de-la-Rua, Concepcion

2015-01-01

The importance of the process of Neolithization for the genetic make-up of European populations has been hotly debated, with shifting hypotheses from a demic diffusion (DD) to a cultural diffusion (CD) model. In this regard, ancient DNA data from the Balkan Peninsula, which is an important source of information to assess the process of Neolithization in Europe, is however missing. In the present study we show genetic information on ancient populations of the South-East of Europe. We assessed mtDNA from ten sites from the current territory of Romania, spanning a time-period from the Early Neolithic to the Late Bronze Age. mtDNA data from Early Neolithic farmers of the Starčevo Criş culture in Romania (Cârcea, Gura Baciului and Negrileşti sites), confirm their genetic relationship with those of the LBK culture (Linienbandkeramik Kultur) in Central Europe, and they show little genetic continuity with modern European populations. On the other hand, populations of the Middle-Late Neolithic (Boian, Zau and Gumelniţa cultures), supposedly a second wave of Neolithic migration from Anatolia, had a much stronger effect on the genetic heritage of the European populations. In contrast, we find a smaller contribution of Late Bronze Age migrations to the genetic composition of Europeans. Based on these findings, we propose that permeation of mtDNA lineages from a second wave of Middle-Late Neolithic migration from North-West Anatolia into the Balkan Peninsula and Central Europe represent an important contribution to the genetic shift between Early and Late Neolithic populations in Europe, and consequently to the genetic make-up of modern European populations.

Leprosy in a Lombard-Avar cemetery in central Italy (Campochiaro, Molise, 6th-8th century AD): ancient DNA evidence and demography.

Science.gov (United States)

Rubini, Mauro; Zaio, Paola; Spigelman, Mark; Donoghue, Helen D

2017-09-01

The study of past infectious diseases increases knowledge of the presence, impact and spread of pathogens within ancient populations. Polymerase chain reaction (PCR) was used to examine bones for the presence of Mycobacterium leprae ancient DNA (aDNA) as, even when leprosy is present, bony changes are not always pathognomonic of the disease. This study also examined the demographic profile of this population and compared it with two other populations to investigate any changes in mortality trends between different infectious diseases and between the pre-antibiotic and antibiotic eras. The individuals were from a site in Central Italy (6th-8th CE) and were examined for the presence of Mycobacterium leprae aDNA. In addition, an abridged life mortality table was constructed. Two individuals had typical leprosy palaeopathology, and one was positive for Mycobacterium leprae aDNA. However, the demographic profile shows a mortality curve similar to that of the standard, in contrast to a population that had been subjected to bubonic plague. This study shows that, in the historical population with leprosy, the risk factors for health seem to be constant and distributed across all age classes, similar to what is found today in the antibiotic era. There were no peaks of mortality equivalent to those found in fatal diseases such as the plague, probably due to the long clinical course of leprosy.

Rapid determination of strontium-89 and strontium-90 in food and environmental samples by Cerenkov counting

International Nuclear Information System (INIS)

Melin, Judith; Suomela, Jorma

1995-01-01

The method has been developed for emergency situations. Minimum detectable concentrations of 5 Bq/liter, kilogram of strontium-89 and strontium-90 respectively is achievable in the presence of nuclides considered to be released under accidental conditions. Result on the strontium-89 and strontium-90 content in a sample can be obtained within 12 hours. One technician can easily handle 8-10 samples during a working day of eight hours. The determination of the strontium isotopes is accomplished by monitoring the Cerenkov radiation from strontium-89 and yttrium-90 in a liquid scintillation counter. The latter is the daughter product of strontium-90. Prior to the Cerenkov counting the sample is separated from interfering nuclides by oxalate precipitation, chromate precipitation and HDEHP-extraction. The method has to be further improved and evaluated with respect to different soil types such as forest mineral soil layers, agricultural soils and pastures. Furthermore, the decontamination procedure should be evaluated for a sample containing freshly irradiated uranium. (author)

A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa

DEFF Research Database (Denmark)

Pedersen, Mikkel Winther; Ginolhac, Aurélien; Orlando, Ludovic Antoine Alexandre

2013-01-01

-eight of thirty-nine samples from the core yielded putative DNA sequences. Using a multiple assignment strategy on the trnL g-h DNA barcode, consisting of two different phylogenetic and one sequence similarity assignment approaches, thirteen families of plants were identified, of which two (. Scrophulariaceae......We use 2nd generation sequencing technology on sedimentary ancient DNA (. sedaDNA) from a lake in South Greenland to reconstruct the local floristic history around a low-arctic lake and compare the results with those previously obtained from pollen and macrofossils in the same lake. Thirty...... and Asparagaceae) are absent from the pollen and macrofossil records. An age model for the sediment based on twelve radiocarbon dates establishes a chronology and shows that the lake record dates back to 10,650calyrBP. Our results suggest that sedaDNA analysis from lake sediments, although taxonomically less...

Ancient DNA from Giant Panda (Ailuropoda melanoleuca) of South-Western China Reveals Genetic Diversity Loss during the Holocene.

Science.gov (United States)

Sheng, Gui-Lian; Barlow, Axel; Cooper, Alan; Hou, Xin-Dong; Ji, Xue-Ping; Jablonski, Nina G; Zhong, Bo-Jian; Liu, Hong; Flynn, Lawrence J; Yuan, Jun-Xia; Wang, Li-Rui; Basler, Nikolas; Westbury, Michael V; Hofreiter, Michael; Lai, Xu-Long

2018-04-06

The giant panda was widely distributed in China and south-eastern Asia during the middle to late Pleistocene, prior to its habitat becoming rapidly reduced in the Holocene. While conservation reserves have been established and population numbers of the giant panda have recently increased, the interpretation of its genetic diversity remains controversial. Previous analyses, surprisingly, have indicated relatively high levels of genetic diversity raising issues concerning the efficiency and usefulness of reintroducing individuals from captive populations. However, due to a lack of DNA data from fossil specimens, it is unknown whether genetic diversity was even higher prior to the most recent population decline. We amplified complete cyt b and 12s rRNA, partial 16s rRNA and ND1 , and control region sequences from the mitochondrial genomes of two Holocene panda specimens. We estimated genetic diversity and population demography by analyzing the ancient mitochondrial DNA sequences alongside those from modern giant pandas, as well as from other members of the bear family (Ursidae). Phylogenetic analyses show that one of the ancient haplotypes is sister to all sampled modern pandas and the second ancient individual is nested among the modern haplotypes, suggesting that genetic diversity may indeed have been higher earlier during the Holocene. Bayesian skyline plot analysis supports this view and indicates a slight decline in female effective population size starting around 6000 years B.P., followed by a recovery around 2000 years ago. Therefore, while the genetic diversity of the giant panda has been affected by recent habitat contraction, it still harbors substantial genetic diversity. Moreover, while its still low population numbers require continued conservation efforts, there seem to be no immediate threats from the perspective of genetic evolutionary potential.

Ancient DNA from Giant Panda (Ailuropoda melanoleuca of South-Western China Reveals Genetic Diversity Loss during the Holocene

Directory of Open Access Journals (Sweden)

Gui-Lian Sheng

2018-04-01

Full Text Available The giant panda was widely distributed in China and south-eastern Asia during the middle to late Pleistocene, prior to its habitat becoming rapidly reduced in the Holocene. While conservation reserves have been established and population numbers of the giant panda have recently increased, the interpretation of its genetic diversity remains controversial. Previous analyses, surprisingly, have indicated relatively high levels of genetic diversity raising issues concerning the efficiency and usefulness of reintroducing individuals from captive populations. However, due to a lack of DNA data from fossil specimens, it is unknown whether genetic diversity was even higher prior to the most recent population decline. We amplified complete cytb and 12s rRNA, partial 16s rRNA and ND1, and control region sequences from the mitochondrial genomes of two Holocene panda specimens. We estimated genetic diversity and population demography by analyzing the ancient mitochondrial DNA sequences alongside those from modern giant pandas, as well as from other members of the bear family (Ursidae. Phylogenetic analyses show that one of the ancient haplotypes is sister to all sampled modern pandas and the second ancient individual is nested among the modern haplotypes, suggesting that genetic diversity may indeed have been higher earlier during the Holocene. Bayesian skyline plot analysis supports this view and indicates a slight decline in female effective population size starting around 6000 years B.P., followed by a recovery around 2000 years ago. Therefore, while the genetic diversity of the giant panda has been affected by recent habitat contraction, it still harbors substantial genetic diversity. Moreover, while its still low population numbers require continued conservation efforts, there seem to be no immediate threats from the perspective of genetic evolutionary potential.

Simulating the Transfer of Strontium-90 from Soil to Leafy Vegetables by Using Strontium-88

OpenAIRE

Kuke, Ding; Shujuan, Liu; Yingxue, He; Dong, Yan; Fengshou, Zhang; Shuifeng, Wang; Jinghua, Guo; Wei, Zhang; Xin, Wang; Xiaoyan, Jiang

2016-01-01

The transfer, from soil to Chinese cabbage and spinach, of radioactive strontium-90 released as a result of accidents in nuclear power stations was studied using a stable isotope of strontium, namely nuclide strontium-88 (88Sr). The study led to an experimental model for assessing the hazard of radionuclide strontium-90 (90Sr) entering the food chain and for predicting the risk to food safety. Chinese cabbage and spinach were grown in pots in a greenhouse and irrigated with deionized water co...

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts

DEFF Research Database (Denmark)

Gilbert, M Thomas P; Tomsho, Lynn P; Rendulic, Snjezana

2007-01-01

Although the application of sequencing-by-synthesis techniques to DNA extracted from bones has revolutionized the study of ancient DNA, it has been plagued by large fractions of contaminating environmental DNA. The genetic analyses of hair shafts could be a solution: We present 10 previously...

Ancient DNA from Nubian and Somali wild ass provides insights into donkey ancestry and domestication.

Science.gov (United States)

Kimura, Birgitta; Marshall, Fiona B; Chen, Shanyuan; Rosenbom, Sónia; Moehlman, Patricia D; Tuross, Noreen; Sabin, Richard C; Peters, Joris; Barich, Barbara; Yohannes, Hagos; Kebede, Fanuel; Teclai, Redae; Beja-Pereira, Albano; Mulligan, Connie J

2011-01-07

Genetic data from extant donkeys (Equus asinus) have revealed two distinct mitochondrial DNA haplogroups, suggestive of two separate domestication events in northeast Africa about 5000 years ago. Without distinct phylogeographic structure in domestic donkey haplogroups and with little information on the genetic makeup of the ancestral African wild ass, however, it has been difficult to identify wild ancestors and geographical origins for the domestic mitochondrial clades. Our analysis of ancient archaeological and historic museum samples provides the first genetic information on the historic Nubian wild ass (Equus africanus africanus), Somali wild ass (Equus africanus somaliensis) and ancient donkey. The results demonstrate that the Nubian wild ass was an ancestor of the first donkey haplogroup. In contrast, the Somali wild ass has considerable mitochondrial divergence from the Nubian wild ass and domestic donkeys. These findings resolve the long-standing issue of the role of the Nubian wild ass in the domestication of the donkey, but raise new questions regarding the second ancestor for the donkey. Our results illustrate the complexity of animal domestication, and have conservation implications for critically endangered Nubian and Somali wild ass.

Strontium-82/rubidium-82 generator

International Nuclear Information System (INIS)

Gennaro, G.P.; Haney, P.S.

1986-01-01

Hydroxylapatite, a compound having the formula: M 10 (PO 4 ) 6 (OH) 2 wherein M is calcium, strontium, barium, lead, iron, sodium, potassium, zinc, cadmium, magnesium, aluminium or a rare earth metal, is provided as a support medium for strontium-82 in a strontium-82/rubidium-82 parent-daughter radionuclide generator

Multiple maternal origins of native modern and ancient horse populations in China.

Science.gov (United States)

Lei, C Z; Su, R; Bower, M A; Edwards, C J; Wang, X B; Weining, S; Liu, L; Xie, W M; Li, F; Liu, R Y; Zhang, Y S; Zhang, C M; Chen, H

2009-12-01

To obtain more knowledge of the origin and genetic diversity of domestic horses in China, this study provides a comprehensive analysis of mitochondrial DNA (mtDNA) D-loop sequence diversity from nine horse breeds in China in conjunction with ancient DNA data and evidence from archaeological and historical records. A 247-bp mitochondrial D-loop sequence from 182 modern samples revealed a total of 70 haplotypes with a high level of genetic diversity. Seven major mtDNA haplogroups (A-G) and 16 clusters were identified for the 182 Chinese modern horses. In the present study, nine 247-bp mitochondrial D-loop sequences of ancient remains of Bronze Age horse from the Chifeng region of Inner Mongolia in China (c. 4000-2000a bp) were used to explore the origin and diversity of Chinese modern horses and the phylogenetic relationship between ancient and modern horses. The nine ancient horses carried seven haplotypes with rich genetic diversity, which were clustered together with modern individuals among haplogroups A, E and F. Modern domestic horse and ancient horse data support the multiple origins of domestic horses in China. This study supports the argument that multiple successful events of horse domestication, including separate introductions of wild mares into the domestic herds, may have occurred in antiquity, and that China cannot be excluded from these events. Indeed, the association of Far Eastern mtDNA types to haplogroup F was highly significant using Fisher's exact test of independence (P = 0.00002), lending support for Chinese domestication of this haplogroup. High diversity and all seven mtDNA haplogroups (A-G) with 16 clusters also suggest that further work is necessary to shed more light on horse domestication in China.

Ancient Biomolecules and Evolutionary Inference.

Science.gov (United States)

Cappellini, Enrico; Prohaska, Ana; Racimo, Fernando; Welker, Frido; Pedersen, Mikkel Winther; Allentoft, Morten E; de Barros Damgaard, Peter; Gutenbrunner, Petra; Dunne, Julie; Hammann, Simon; Roffet-Salque, Mélanie; Ilardo, Melissa; Moreno-Mayar, J Víctor; Wang, Yucheng; Sikora, Martin; Vinner, Lasse; Cox, Jürgen; Evershed, Richard P; Willerslev, Eske

2018-04-25

Over the last decade, studies of ancient biomolecules-particularly ancient DNA, proteins, and lipids-have revolutionized our understanding of evolutionary history. Though initially fraught with many challenges, the field now stands on firm foundations. Researchers now successfully retrieve nucleotide and amino acid sequences, as well as lipid signatures, from progressively older samples, originating from geographic areas and depositional environments that, until recently, were regarded as hostile to long-term preservation of biomolecules. Sampling frequencies and the spatial and temporal scope of studies have also increased markedly, and with them the size and quality of the data sets generated. This progress has been made possible by continuous technical innovations in analytical methods, enhanced criteria for the selection of ancient samples, integrated experimental methods, and advanced computational approaches. Here, we discuss the history and current state of ancient biomolecule research, its applications to evolutionary inference, and future directions for this young and exciting field. Expected final online publication date for the Annual Review of Biochemistry Volume 87 is June 20, 2018. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany.

Science.gov (United States)

Star, Bastiaan; Boessenkool, Sanne; Gondek, Agata T; Nikulina, Elena A; Hufthammer, Anne Karin; Pampoulie, Christophe; Knutsen, Halvor; André, Carl; Nistelberger, Heidi M; Dierking, Jan; Petereit, Christoph; Heinrich, Dirk; Jakobsen, Kjetill S; Stenseth, Nils Chr; Jentoft, Sissel; Barrett, James H

2017-08-22

Knowledge of the range and chronology of historic trade and long-distance transport of natural resources is essential for determining the impacts of past human activities on marine environments. However, the specific biological sources of imported fauna are often difficult to identify, in particular if species have a wide spatial distribution and lack clear osteological or isotopic differentiation between populations. Here, we report that ancient fish-bone remains, despite being porous, brittle, and light, provide an excellent source of endogenous DNA (15-46%) of sufficient quality for whole-genome reconstruction. By comparing ancient sequence data to that of modern specimens, we determine the biological origin of 15 Viking Age (800-1066 CE) and subsequent medieval (1066-1280 CE) Atlantic cod ( Gadus morhua ) specimens from excavation sites in Germany, Norway, and the United Kingdom. Archaeological context indicates that one of these sites was a fishing settlement for the procurement of local catches, whereas the other localities were centers of trade. Fish from the trade sites show a mixed ancestry and are statistically differentiated from local fish populations. Moreover, Viking Age samples from Haithabu, Germany, are traced back to the North East Arctic Atlantic cod population that has supported the Lofoten fisheries of Norway for centuries. Our results resolve a long-standing controversial hypothesis and indicate that the marine resources of the North Atlantic Ocean were used to sustain an international demand for protein as far back as the Viking Age.

Evolutional dynamics of 45S and 5S ribosomal DNA in ancient allohexaploid Atropa belladonna.

Science.gov (United States)

Volkov, Roman A; Panchuk, Irina I; Borisjuk, Nikolai V; Hosiawa-Baranska, Marta; Maluszynska, Jolanta; Hemleben, Vera

2017-01-23

inheritance from the tetraploid progenitor. The obtained molecular, cytogenetic and phylogenetic data demonstrate complex evolutionary dynamics of rDNA loci in allohexaploid species of Atropa belladonna. The high level of sequence unification revealed in 45S and 5S rDNA loci of this ancient hybrid species have been seemingly achieved by different molecular mechanisms.

Combined transuranic-strontium extraction process

Science.gov (United States)

Horwitz, E. Philip; Dietz, Mark L.

1992-01-01

The transuranic (TRU) elements neptunium, plutonium and americium can be separated together with strontium from nitric acid waste solutions in a single process. An extractant solution of a crown ether and an alkyl(phenyl)-N,N-dialkylcarbanylmethylphosphine oxide in an appropriate diluent will extract the TRU's together with strontium, uranium and technetium. The TRU's and the strontium can then be selectively stripped from the extractant for disposal.

Perspectives for DNA studies on polar ice cores

DEFF Research Database (Denmark)

Hansen, Anders J.; Willerslev, E.

2002-01-01

Recently amplifiable ancient DNA was obtained from a Greenland ice core. The DNA revealed a diversity of fungi, plants, algae and protists and has thereby expanded the range of detectable organic material in fossil glacier ice. The results suggest that ancient DNA can be obtained from other ice c...

Ancient DNA reveals substantial genetic diversity in the California Condor (Gymnogyps californianus) prior to a population bottleneck

Science.gov (United States)

D'Elia, Jesse; Haig, Susan M.; Mullins, Thomas D.; Miller, Mark P.

2016-01-01

Critically endangered species that have undergone severe population bottlenecks often have little remaining genetic variation, making it difficult to reconstruct population histories to apply in reintroduction and recovery strategies. By using ancient DNA techniques, it is possible to combine genetic evidence from the historical population with contemporary samples to provide a more complete picture of a species' genetic variation across its historical range and through time. Applying this approach, we examined changes in the mitochondrial DNA (mtDNA) control region (526 base pairs) of the endangered California Condor (Gymnogyps californianus). Results showed a >80% reduction in unique haplotypes over the past 2 centuries. We found no spatial sorting of haplotypes in the historical population; the periphery of the range contained haplotypes that were common throughout the historical range. Direct examination of mtDNA from California Condor museum specimens provided a new window into historical population connectivity and genetic diversity showing: (1) a substantial loss of haplotypes, which is consistent with the hypothesis that condors were relatively abundant in the nineteenth century, but declined rapidly as a result of human-caused mortality; and (2) no evidence of historical population segregation, meaning that the available genetic data offer no cause to avoid releasing condors in unoccupied portions of their historical range.

Letter to the editor: Genetics and the archaeology of ancient Israel.

Science.gov (United States)

Brody, Aaron J; King, Roy J

2013-12-01

This letter is a call for DNA testing on ancient skeletal materials from the southern Levant to begin a database of genetic information of the inhabitants of this crossroads region. In this region, during the Iron I period traditionally dated to circa 1200-1000 BCE, archaeologists and biblical historians view the earliest presence of a group that called itself Israel. They lived in villages in the varied hill countries of the region, contemporary with urban settlements in the coastal plains, inland valleys, and central hill country attributed to varied indigenous groups collectively called Canaanite. The remnants of Egyptian imperial presence in the region lasted until around 1150 BCE, postdating the arrival of an immigrant group from the Aegean called the Philistines circa 1175 BCE. The period that follows in the southern Levant is marked by the development of territorial states throughout the region, circa 1000-800 BCE. These patrimonial kingdoms, including the United Kingdom of Israel and the divided kingdoms of northern Israel and Judah, coalesced varied peoples under central leadership and newly founded administrative and religious bureaucracies. Ancient DNA testing will give us a further refined understanding of the individuals who peopled the region of the southern Levant throughout its varied archaeological and historic periods and provide scientific data that will support, refute, or nuance our sociohistoric reconstruction of ancient group identities. These social identities may or may not map onto genetic data, but without sampling of ancient DNA we may never know. A database of ancient DNA will also allow for comparisons with modern DNA samples collected throughout the greater region and the Mediterranean littoral, giving a more robust understanding of the long historical trajectories of regional human genetics and the genetics of varied ancestral groups of today's Jewish populations and other cultural groups in the modern Middle East and Mediterranean

Deposition of strontium and calcium in snail shell

Energy Technology Data Exchange (ETDEWEB)

Rosenthal, Jr, G M; Nelson, D J; Gardiner, D A

1965-07-03

The relative effects of strontium and calcium concentrations in the environment on their uptake and incorporation into snail shell were investigated. /sup 45/Ca and /sup 85/Sr were used as tracers and specific activities were used to determine deposition. Data are presented in tables and graphs. Deposition of both calcium and strontium in the snail shell depended primarily on the respective concentrations of these elements in the immediate environment. A slight effect of strontium on calcium deposition was observed. There was found to be a minimum strontium deposition for various combinations of strontium and calcium in the environment. It was concluded that strontium uptake is more closely associated with environmental strontium concentrations than with calcium concentrations.

Siberian population of the New Stone Age: mtDNA haplotype diversity in the ancient population from the Ust'-Ida I burial ground, dated 4020-3210 BC by 14C.

Science.gov (United States)

Naumova O, Y u; Rychkov S, Y u

1998-03-01

On the basis of analysis of mtDNA from skeletal remains, dated by 14C 4020-3210 BC, from the Ust'-Ida I Neolithic burial ground in Cis-Baikal area of Siberia, we obtained genetic characteristics of the ancient Mongoloid population. Using the 7 restriction enzymes for the analysis of site's polymorphism in 16,106-16,545 region of mtDNA, we studied the structure of the most frequent DNA haplotypes, and estimated the intrapopulational nucleotide diversity of the Neolithic population. Comparison of the Neolithic and modern indigeneous populations from Siberia, Mongolia and Ural showed, that the ancient Siberian population is one of the ancestors of the modern population of Siberia. From genetic distance, in the assumption of constant nucleotide substitution rate, we estimated the divergence time between the Neolithic and the modern Siberian population. This divergence time (5572 years ago) is conformed to the age of skeletal remains (5542-5652 years). With use of the 14C dates of the skeletal remains, nucleotide substitution rate in mtDNA was estimated as 1% sequence divergence for 8938-9115 years.

A new method for the preparation of strontium titanate and strontium hypovanadate

International Nuclear Information System (INIS)

Balasubramanian, M.R.

1985-01-01

Strontium titanate has been a prized chemical by virtue of its dielectric, photoelectric and surface properties. The compound crystallises with the cubic perovskite structure. Till now only two techniques (and a few variants therein) have been employed for its synthesis, one of them is a solid state reaction between SrCO 3 and TiO 2 at 1100deg, and the other is a coprecipitation of strontium titanyl oxalate followed by calcination at 850deg. As ternary oxides, such as copper chromite, have been prepared by complex formation, the author found it interesting to apply this method to the preparation of strontium titanate. The most easily accessible and versatile complexing agent, EDTA, was used. (author)

Pre-Columbian Population Dynamics and Cultural Development in South Coast Perú as Revealed by Analysis of Ancient DNA

OpenAIRE

Fehren-Schmitz, Lars

2012-01-01

In this paper I report on a study whose principal aim is to understand the development and decline of the southern Peruvian Nasca culture in the upper Río Grande de Nasca drainage, and its cultural and biological affinities to the preceding Paracas culture. Ancient DNA analyses were conducted on over 300 pre-Columbian individuals from various cemeteries in southern Perú, from periods ranging from the Formative Period to the Middle Horizon. Our results show that the Nasca populations are close...

Genetic diversity among ancient Nordic populations

DEFF Research Database (Denmark)

Melchior, Linea Cecilie; Lynnerup, Niels; Siegismund, Hans Redlef

2010-01-01

, the success rate varied substantially between sites; the highest rates were obtained with untouched, freshly excavated material, whereas heavy handling, archeological preservation and storage for many years influenced the ability to obtain authentic endogenic DNA. While the nucleotide diversity at two...... the ancient Danes (average 13%) than among extant Danes and Scandinavians ( approximately 2.5%) as well as among other ancient population samples reported. Haplogroup I could therefore have been an ancient Southern Scandinavian type "diluted" by later immigration events. Interestingly, the two Neolithic...... samples (4,200 YBP, Bell Beaker culture) that were typed were haplogroup U4 and U5a, respectively, and the single Bronze Age sample (3,300-3,500 YBP) was haplogroup U4. These two haplogroups have been associated with the Mesolithic populations of Central and Northern Europe. Therefore, at least...

Determination of radioactive strontium in seawater

International Nuclear Information System (INIS)

Grahek, Zeljko; Rozmaric Macefat, Martina

2005-01-01

This paper describes the procedures of isolating strontium and yttrium from seawater that enable the determination of 89,90 Sr. In one procedure, strontium is directly isolated from seawater on the column filled with Sr resin by binding of strontium to the resin from 3 M HNO 3 in a seawater, and successive elution with HNO 3 . In others, strontium is precipitated from seawater with (NH 4 ) 2 CO 3 , followed by isolation on a Sr column or an anion exchange column. It is shown that strontium precipitation is optimal with concentration of 0.3 M (NH 4 ) 2 CO 3 at pH = 11. In these conditions, 100% Y, 78% Sr, 80% Ca and 50% Mg are precipitated. Strontium is bound on to Sr column from 5 to 8 M HNO 3 , separated from other elements by elution with 3 M HNO 3 and 0.05 M HNO 3 . Strontium and yttrium are bound on to anion exchange column from alcoholic solutions of nitric acid. The optimum mixture of alcohols for sample binding is a mixture of ethanol and methanol with the volume ratio 1:3. Strontium and yttrium are separated from Mg, Ca, K, and other elements by elution with 0.25 M HNO 3 in the mixture of ethanol and methanol. After the separation, yttrium and strontium are eluted from the column with water or methanol. In the procedure of direct isolation from 1 l of the sample, the average recovery of 50% was obtained. In the remaining two procedures, the strontium recovery was about 60% for the Sr column and 65% for anion exchange column. Recovery of yttrium is about 70% for the anion exchange column. It turned out that the procedure with the Sr resin (direct isolation and isolation after precipitation) is simpler and faster in the phase of the isolation on the column in comparison with the procedure with the anion exchanger. The procedure with the anion exchanger, however, enables the simultaneous isolation of yttrium and strontium and rapid determination of 89,90 Sr. These procedures were tested by determination of 89,90 Sr on liquid scintillation counter and Cherenkov

Removal of Strontium from Drinking Water by Conventional ...

Science.gov (United States)

The United States Environmental Protection Agency Contaminant Candidate List 3 lists strontium as a contaminant for potential regulatory consideration in drinking water. There is very little data available on strontium removal from drinking water. As a result, there is an immediate need to perform treatment studies. The objective of this work is to evaluate the effectiveness of conventional and lime-soda ash softening treatments to remove strontium from surface and ground waters. Conventional drinking water treatment with aluminum and iron coagulants were able to achieve 12% and 5.9% strontium removal at best, while lime softening removed as much as 78% from natural strontium-containing ground water. Systematic fundamental experiments showed that strontium removal during the lime-soda ash softening was related to pH, calcium concentration and dissolved inorganic carbon concentration. Final strontium concentration was also directly associated with initial strontium concentration. Precipitated solids showed well-formed crystals or agglomerates of mixed solids, two polymorphs of calcium carbonate (vaterite and calcite), and strontianite, depending on initial water quality conditions. X-ray diffraction analysis suggested that strontium likely replaced calcium inside the crystal lattice and was likely mainly responsible for removal during lime softening. To inform the public.

A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa

Science.gov (United States)

Pedersen, Mikkel Winther; Ginolhac, Aurélien; Orlando, Ludovic; Olsen, Jesper; Andersen, Kenneth; Holm, Jakob; Funder, Svend; Willerslev, Eske; Kjær, Kurt H.

2013-09-01

We use 2nd generation sequencing technology on sedimentary ancient DNA (sedaDNA) from a lake in South Greenland to reconstruct the local floristic history around a low-arctic lake and compare the results with those previously obtained from pollen and macrofossils in the same lake. Thirty-eight of thirty-nine samples from the core yielded putative DNA sequences. Using a multiple assignment strategy on the trnL g-h DNA barcode, consisting of two different phylogenetic and one sequence similarity assignment approaches, thirteen families of plants were identified, of which two (Scrophulariaceae and Asparagaceae) are absent from the pollen and macrofossil records. An age model for the sediment based on twelve radiocarbon dates establishes a chronology and shows that the lake record dates back to 10,650 cal yr BP. Our results suggest that sedaDNA analysis from lake sediments, although taxonomically less detailed than pollen and macrofossil analyses can be a complementary tool for establishing the composition of both terrestrial and aquatic local plant communities and a method for identifying additional taxa.

Strontium-90 fluoride data sheet

Energy Technology Data Exchange (ETDEWEB)

Fullam, H.T.

1981-06-01

This report is a compilation of available data and appropriate literature references on the properties of strontium-90 fluoride and nonradioactive strontium fluoride. The objective of the document is to compile in a single source pertinent data to assist potential users in the development, licensing, and use of /sup 90/SrF/sub 2/-fueled radioisotope heat sources for terrestrial power conversion and thermal applications. The report is an update of the Strontium-90 Fluoride Data Sheet (BNWL-2284) originally issued in April 1977.

Dendritic network models: Improving isoscapes and quantifying influence of landscape and in-stream processes on strontium isotopes in rivers

Science.gov (United States)

Brennan, Sean R.; Torgersen, Christian E.; Hollenbeck, Jeff P.; Fernandez, Diego P.; Jensen, Carrie K.; Schindler, Daniel E.

2016-05-01

A critical challenge for the Earth sciences is to trace the transport and flux of matter within and among aquatic, terrestrial, and atmospheric systems. Robust descriptions of isotopic patterns across space and time, called "isoscapes," form the basis of a rapidly growing and wide-ranging body of research aimed at quantifying connectivity within and among Earth's systems. However, isoscapes of rivers have been limited by conventional Euclidean approaches in geostatistics and the lack of a quantitative framework to apportion the influence of processes driven by landscape features versus in-stream phenomena. Here we demonstrate how dendritic network models substantially improve the accuracy of isoscapes of strontium isotopes and partition the influence of hydrologic transport versus local geologic features on strontium isotope ratios in a large Alaska river. This work illustrates the analytical power of dendritic network models for the field of isotope biogeochemistry, particularly for provenance studies of modern and ancient animals.

Strontium isotopic study of sediment from the Ross Sea

International Nuclear Information System (INIS)

Kovach, J.; Faure, G.

1977-01-01

A preliminary report summarizing the results of a study of the strontium-87/strontium-86 ratios and of the rubidium and strontium concentrations of the fine-grained (less than 150 microns) noncarbonate fractions of sediment samples from core E32-25 raised from a depth of 327 fathoms in the Ross Sea at 78 0 31.0'S 164 0 24.7'W was presented. The strontium-87/strontium-86 ratios of the samples analyzed range from 0.7119 to 0.7220. Rubidium and strontium concentrations range, respectively, from 126 to 164 parts per million and from 113 to 174 parts per million. The observed strontium-87/strontium-86 ratios and strontium concentrations in sediment samples from core E32-25 fit a hyperbolic curve. These ratios can be used to estimate the concentrations of volcanogenic detritus in the sediment samples. The results of this study provide additional baseline data for anticipated future studies of sediment cores to be recovered from beneath the Ross Ice Shelf by the Ross Ice Shelf Project. 1 figure

Ancient mtDNA genetic variants modulate mtDNA transcription and replication.

Directory of Open Access Journals (Sweden)

Sarit Suissa

2009-05-01

Full Text Available Although the functional consequences of mitochondrial DNA (mtDNA genetic backgrounds (haplotypes, haplogroups have been demonstrated by both disease association studies and cell culture experiments, it is not clear which of the mutations within the haplogroup carry functional implications and which are "evolutionary silent hitchhikers". We set forth to study the functionality of haplogroup-defining mutations within the mtDNA transcription/replication regulatory region by in vitro transcription, hypothesizing that haplogroup-defining mutations occurring within regulatory motifs of mtDNA could affect these processes. We thus screened >2500 complete human mtDNAs representing all major populations worldwide for natural variation in experimentally established protein binding sites and regulatory regions comprising a total of 241 bp in each mtDNA. Our screen revealed 77/241 sites showing point mutations that could be divided into non-fixed (57/77, 74% and haplogroup/sub-haplogroup-defining changes (i.e., population fixed changes, 20/77, 26%. The variant defining Caucasian haplogroup J (C295T increased the binding of TFAM (Electro Mobility Shift Assay and the capacity of in vitro L-strand transcription, especially of a shorter transcript that maps immediately upstream of conserved sequence block 1 (CSB1, a region associated with RNA priming of mtDNA replication. Consistent with this finding, cybrids (i.e., cells sharing the same nuclear genetic background but differing in their mtDNA backgrounds harboring haplogroup J mtDNA had a >2 fold increase in mtDNA copy number, as compared to cybrids containing haplogroup H, with no apparent differences in steady state levels of mtDNA-encoded transcripts. Hence, a haplogroup J regulatory region mutation affects mtDNA replication or stability, which may partially account for the phenotypic impact of this haplogroup. Our analysis thus demonstrates, for the first time, the functional impact of particular mtDNA

Effects of calcium and magnesium on strontium distribution coefficients

Science.gov (United States)

Bunde, R.L.; Rosentreter, J.J.; Liszewski, M.J.; Hemming, C.H.; Welhan, J.

1997-01-01

The effects of calcium and magnesium on the distribution of strontium between a surficial sediment and simulated wastewater solutions were measured as part of an investigation to determine strontium transport properties of surficial sediment at the Idaho National Engineering Laboratory (INEL), Idaho. The investigation was conducted by the U.S. Geological Survey and Idaho State University, in cooperation with the U.S. Department of Energy. Batch experimental techniques were used to determine strontium linear sorption isotherms and distribution coefficients (K(d)'s) using simulated wastewater solutions prepared at pH 8.0??0.1 with variable concentrations of calcium and magnesium. Strontium linear sorption isotherm K(d)'s ranged from 12??1 to 85??3 ml/g, increasing as the concentration of calcium and magnesium decreased. The concentration of sorbed strontium and the percentage of strontium retained by the sediment were correlated to aqueous concentrations of strontium, calcium, and magnesium. The effect of these cation concentrations on strontium sorption was quantified using multivariate least-squares regression techniques. Analysis of data from these experiments indicates that increased concentrations of calcium and magnesium in wastewater discharged to waste disposal ponds at the INEL increases the availability of strontium for transport beneath the ponds by decreasing strontium sorption to the surficial sediment.

Hanford waste encapsulation: strontium and cesium

International Nuclear Information System (INIS)

Jackson, R.R.

1976-06-01

The strontium and cesium fractions separated from high radiation level wastes at Hanford are converted to the solid strontium fluoride and cesium chloride salts, doubly encapsulated, and stored underwater in the Waste Encapsulation and Storage Facility (WESF). A capsule contains approximately 70,000 Ci of 137 Cs or 70,000 to 140,000 Ci of 90 Sr. Materials for fabrication of process equipment and capsules must withstand a combination of corrosive chemicals, high radiation dosages and frequently, elevated temperatures. The two metals selected for capsules, Hastelloy C-276 for strontium fluoride and 316-L stainless steel for cesium chloride, are adequate for prolonged containment. Additional materials studies are being done both for licensing strontium fluoride as source material and for second generation process equipment

Heteroplasmy and ancient translocation of mitochondrial DNA to the nucleus in the Chinese Horseshoe Bat (Rhinolophus sinicus complex.

Directory of Open Access Journals (Sweden)

Xiuguang Mao

Full Text Available The utility and reliability of mitochondrial DNA sequences in phylogenetic and phylogeographic studies may be compromised by widespread and undetected nuclear mitochondrial copies (numts as well as heteroplasmy within individuals. Both numts and heteroplasmy are likely to be common across diverse taxa yet few studies have characterised their frequencies and variation at the intra-specific level. Here we report the presence of both numts and heteroplasmy in the mitochondrial control region of the Chinese horseshoe bat Rhinolophus sinicus. In total we generated 123 sequences from 18 bats, which contained two different numt clades (i.e. Numt-1 and Numt-2 and one mtDNA clade. The sequence divergence between Numt-1 and Numt-2 was 16.8% and each numt type was found in all four R. sinicus taxa, suggesting either two ancient translocations of mitochondrial DNA into the nucleus from the same source taxon, or a single translocation from different source taxa that occurred before the split of R. sinicus into different lineages. Within the mtDNA clade, phylogenetic relationships among the four taxa of R. sinicus were similar to those seen in previous results. Based on PCR comparisons, heteroplasmy was inferred between almost all individuals of R. sinicus with respect to sequence variation. Consistent with introgression of mtDNA between Central sinicus and septentrionalis, individuals from these two taxa exhibited similar signatures of repeated sequences in the control region. Our study highlights the importance of testing for the presence of numts and heteroplasmy when applying mtDNA markers to phylogenetic studies.

Distribution of strontium in milk component

International Nuclear Information System (INIS)

Rosskopfova, O.; Galambos, M.; Rajec, P.

2011-01-01

The distribution of strontium between the milk components, i.e., serum, casein micelles, whey and hydroxyapatite was determined. The sorption on hydroxyapatite was investigated using batch method and radiotracer technique. The aqueous phase comprised of either milk or whey. The sorption of strontium on hydroxyapatite depended on the method of its preparation and on the composition of the aqueous phase. The sorption of strontium was increased with an increase of pH. The presence of citrate species resulted in decrease of the sorption of strontium on hydroxyapatite. The sorption of 85 Sr on hydroxyapatite decreased with the increasing concentration of Ca 2+ ions. Addition of Ca 2+ ions to milk resulted in milk pH decrease. The decrease in pH value after calcium addition to milk is related to exchanges between added calcium and micellar H + . The average value of strontium sorption on casein micelles in milk with presence of hydroxyapatite was (47.3 ± 5.6) %. The average value of sorption of 85 Sr on casein micelles in milk without the addition of hydroxyapatite was (68.9 ± 2.2) %. (author)

THE BEST ATHLETES IN ANCIENT ROME WERE VEGETARIAN!

Directory of Open Access Journals (Sweden)

Umile Giuseppe Longo

2008-12-01

Full Text Available The figure of gladiators recalls the ideas of strength, hard training, endurance, and deadly efficiency: a perfect fighting machine. Historically, a gladiator was a sort of sport hero, and gladiator's medicine probably one of the first forms of organised sports medicine. Statues and paintings of the ancient roman period tell us of this astonishing world of fighters. There are traces of famous gladiators all over the known world at Roman times, resembling our Mohammad Ali or Mike Tyson. Most of them grew up in fighting schools, the most famous in Capua, near Naples in Italy: Spartacus, the rebel gladiator who inflicted a severe defeat to Roman army, came from there. Gladiators had to endure long session of training to fight in the arena. Considering the modern diets of strength athletes, we should expect that gladiators had a high protein diet. However, analysis of their bones has put forward the hypothesis that gladiators were vegetarian athletes: in his accounts of Rome, the ancient historian Plinius refers to gladiators as "hordearii" (barley-eaters (Eichholz et al., 1938. Plants contain higher levels of strontium than animal tissues. People who consume more plants and less meat will build up measurably higher levels of strontium in their bones. Levels of strontium in the gladiators' bones were two times as high than the bones of contemporary Ephesians (Kanz and Grossschmidt, 2007. Roman army troopers, the "legionnaires", had daily expenditure of energy that can be estimated at around 5000 kcal for the legionnaire performing engineer work and at 6000 kcal for the legionnaire in war action. At present, only workmen and sportsmen reach such levels of energy expenditure (Fornaris and Aubert, 1998. Legionnaires were able to endure long war campaignes and endless "magnis itineribus" (forced marches with incredible resistance to fatigue. The legionnaire's daily ration consisted of 78% carbohydrates, mainly from wheat or barley. This diet has the

Strontium metabolism and mechanism of interaction with mineralized tissues

International Nuclear Information System (INIS)

Wadkins, C.L.; Fu Peng, C

1981-01-01

This paper examines the administration of strontium to birds and mammals which results in limited incorporation into skeletal tissue, depressed intestinal calcium absorption, and development of rachitic bone lesions. Comparison of radiostrontium and radiocalcium incorporation by intact animals reveals discrimination against strontium in favor of calcium. Comparison of the Sr 85 - Ca 2+ and Ca 45 - Ca 2+ exchange reveals discrimination against strontium in favor of calcium. Thus, this system manifests product specificity, strontium inhibition, strontium exchange, and discrimination observed with intact animals

Uptake behavior of titanium molybdophosphate for cesium and strontium

International Nuclear Information System (INIS)

Yavari, R.; Ahmadi, S.J.; Huang, Y.D.

2010-01-01

This study investigates uptake of cesium and strontium from aqueous solution similar to nuclear waste on three samples of titanium molybdophosphate (TMP) synthesized under various conditions. Effects of concentration of sodium nitrate, pH and contact time on the uptake of cesium and strontium have been studied by bath method. The results showed that TMP has high affinity toward cesium and strontium at pH > 2 and relatively low concentration of sodium nitrate. Kinetic data indicated that cesium uptake process to achieve equilibrium was faster than strontium. Cesium and strontium breakthrough curves were examined at 25 deg C using column packed with H 3 O + form of TMP and breakthrough curves showed symmetrical S-shaped profiles. At the same time, the calculated breakthrough capacity for cesium was higher than strontium. The results of desorption studies showed that over 99% of cesium and strontium was washed out of column by using 4 M NH 4 Cl solution. This study suggests that TMP can have great potential applications for the removal of strontium and specially cesium from nuclear waste solution. (author)

Calcium phosphate cements with strontium halides as radiopacifiers.

Science.gov (United States)

López, Alejandro; Montazerolghaem, Maryam; Engqvist, Håkan; Ott, Marjam Karlsson; Persson, Cecilia

2014-02-01

High radiopacity is required to monitor the delivery and positioning of injectable implants. Inorganic nonsoluble radiopacifiers are typically used in nondegradable bone cements; however, their usefulness in resorbable cements is limited due to their low solubility. Strontium halides, except strontium fluoride, are ionic water-soluble compounds that possess potential as radiopacifiers. In this study, we compare the radiopacity, mechanical properties, composition, and cytotoxicity of radiopaque brushite cements prepared with strontium fluoride (SrF2 ), strontium chloride (SrCl2 ·6H2 O), strontium bromide (SrBr2 ), or strontium iodide (SrI2 ). Brushite cements containing 10 wt % SrCl2 ·6H2 O, SrBr2 , or SrI2 exhibited equal to or higher radiopacity than commercial radiopaque cements. Furthermore, the brushite crystal lattice in cements that contained the ionic radiopacifiers was larger than in unmodified cements and in cements that contained SrF2 , indicating strontium substitution. Despite the fact that the strontium halides increased the solubility of the cements and affected their mechanical properties, calcium phosphate cements containing SrCl2 ·6H2 O, SrBr2 , and SrI2 showed no significant differences in Saos-2 cell viability and proliferation with respect to the control. Strontium halides: SrCl2 ·6H2 O, SrBr2 , and SrI2 may be potential candidates as radiopacifiers in resorbable biomaterials although their in vivo biocompatibility, when incorporated into injectable implants, is yet to be assessed. Copyright © 2013 Wiley Periodicals, Inc.

Ancient DNA from latrines in Northern Europe and the Middle East (500 BC–1700 AD) reveals past parasites and diet

DEFF Research Database (Denmark)

Søe, Martin Jensen; Nejsum, Peter; Seersholm, Frederik Valeur

2018-01-01

, vertebrate and plant DNA proved highly informative in the study of ancient health, human-animal interactions as well as animal and plant dietary components. Most prominent were finding of soil-borne parasites transmitted directly between humans, but also meat-borne parasites that require consumption of raw...... or undercooked fish and pork. The detection of parasites for which sheep, horse, dog, pig, and rodents serves as definitive hosts are clear markers of domestic and synanthropic animals living in closer proximity of the respective sites. Finally, the reconstruction of full mitochondrial parasite genomes from...

Strontium sorption on Savannah River Plant soils

International Nuclear Information System (INIS)

Hoeffner, S.L.

1984-12-01

A laboratory study of strontium-85 sorption was conducted using Savannah River Plant soil and groundwater from the low-level waste burial ground. Systematic variation of soil and water composition indicates that strontium sorption is most strongly a function of pH. Changes in clay content and in K + , Ca 2+ , or Mg 2+ concentrations influence strontium sorption indirectly through the slight pH changes which result. The ions Na + , Cl - , and NO 3 - have no effect. Ferrous ion, added to groundwater to simulate the conditions of water at the bottom of waste trenches, did not account for low strontium sorption observed with some trench waters

Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics.

Science.gov (United States)

Paijmans, Johanna L A; Barnett, Ross; Gilbert, M Thomas P; Zepeda-Mendoza, M Lisandra; Reumer, Jelle W F; de Vos, John; Zazula, Grant; Nagel, Doris; Baryshnikov, Gennady F; Leonard, Jennifer A; Rohland, Nadin; Westbury, Michael V; Barlow, Axel; Hofreiter, Michael

2017-11-06

Saber-toothed cats (Machairodontinae) are among the most widely recognized representatives of the now largely extinct Pleistocene megafauna. However, many aspects of their ecology, evolution, and extinction remain uncertain. Although ancient-DNA studies have led to huge advances in our knowledge of these aspects of many other megafauna species (e.g., mammoths and cave bears), relatively few ancient-DNA studies have focused on saber-toothed cats [1-3], and they have been restricted to short fragments of mitochondrial DNA. Here we investigate the evolutionary history of two lineages of saber-toothed cats (Smilodon and Homotherium) in relation to living carnivores and find that the Machairodontinae form a well-supported clade that is distinct from all living felids. We present partial mitochondrial genomes from one S. populator sample and three Homotherium sp. samples, including the only Late Pleistocene Homotherium sample from Eurasia [4]. We confirm the identification of the unique Late Pleistocene European fossil through ancient-DNA analyses, thus strengthening the evidence that Homotherium occurred in Europe over 200,000 years later than previously believed. This in turn forces a re-evaluation of its demography and extinction dynamics. Within the Machairodontinae, we find a deep divergence between Smilodon and Homotherium (∼18 million years) but limited diversity between the American and European Homotherium specimens. The genetic data support the hypothesis that all Late Pleistocene (or post-Villafrancian) Homotherium should be considered a single species, H. latidens, which was previously proposed based on morphological data [5, 6]. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ceria and strontium titanate based electrodes

DEFF Research Database (Denmark)

2010-01-01

A ceramic anode structure obtainable by a process comprising the steps of: (a) providing a slurry by dispersing a powder of an electronically conductive phase and by adding a binder to the dispersion, in which said powder is selected from the group consisting of niobium-doped strontium titanate......, vanadium-doped strontium titanate, tantalum-doped strontium titanate, and mixtures thereof, (b) sintering the slurry of step (a), (c) providing a precursor solution of ceria, said solution containing a solvent and a surfactant, (d) impregnating the resulting sintered structure of step (b...

Fixation of Radioactive Strontium in Soil

DEFF Research Database (Denmark)

Gregers-Hansen, Birte

1964-01-01

of the other long-lived fission products. Much work2–5 has, therefore, been concerned with the possibility of bringing down the strontium-90 uptake by plants through ploughing or through the addition of lime or fertilizer to the soil. Another factor, the effect of ageing on the availability of strontium, has...... been considered6,7. In general, these methods appear to be of little practical value, except for deep ploughing and the liming of acid soils, both of which will reduce the strontium uptake by a factor of 3–4....

Sorption isolation of strontium from seawater

International Nuclear Information System (INIS)

Avramenko, V.A.; Zheleznov, V.V.; Kaplun, E.V.; Sokol'nitskaya, T.A.; Yukhkam, A.A.

2001-01-01

Sorption isolation of strontium from seawater is considered and prospects of use of selective adsorbents for purification of seawater or liquid radioactive wastes mixed with seawater from 90 Sr are discussed. Comparative analysis of sorptive properties of adsorbents of different nature is done. It is shown that sorption-reagent materials developed by authors can to afford effective separation of 90 Sr from seawater. Possible mechanism of strontium sorption by these adsorbents is considered. The prospect of their use for purification of liquid radioactive wastes from strontium is shown [ru

Determination of mineral radioactive strontium-{sup 90} in urines; Recherche du strontium mineral radioactif {sup 90}Sr dans les urines

Energy Technology Data Exchange (ETDEWEB)

Jeanmaire, L; Jammet, H; Bertrand, S [Commissariat a l' Energie Atomique, Saclay (France).Centre d' Etudes Nucleaires

1959-07-01

An analytical procedure for radioactive strontium in urine is described. As a first step, a precipitation of calcium oxalate performed on the urine, allows to detect the presence of various fission products and particularly of strontium which is carried by the precipitate. Strontium can then be selectively separated on ion exchange resins. By studying the growth curve of {beta} activity, it is possible to determine the activities which may be attributed to {sup 89}Sr and {sup 90}Sr respectively. (author) [French] Cet article decrit une technique de dosage du strontium radioactif dans les urines. Dans un premier stade, une precipitation d'oxalate de calcium effectuee sur l'urine permet de deceler la presence de differents produits de fission et en particulier du strontium qui est entraine sur ce precipite. Il est possible ensuite de separer selectivement le strontium au moyen de resines echangeuses d'ions. L'examen de le courbe de croissance de l'activite {beta} permet de determiner les activites dues respectivement a {sup 89}Sr et {sup 90}Sr. (auteur)

Strontium-90 migration in Hanford sediments, USA

International Nuclear Information System (INIS)

Steefel, C.I.; Yang, L.; Carroll, S.A.; Roberts, S.; Zachara, J.M.; Yabusaki, S.B.

2005-01-01

Full text of publication follows: Strontium-90 is an important risk-driving contaminant at the Hanford site in eastern Washington, USA. Disposal operations at the Hanford 100-N area released millions of liters of reactor cooling water containing high concentrations of strontium-90 into the vadose zone immediately adjacent to the Columbia River. The effectiveness of pump-and-treat methods for remediation have been questioned, largely because the strontium is strongly sorbed on subsurface sediments via ion exchange reactions and co-precipitation in carbonates. In addition, groundwater monitoring wells show a fluctuating seasonal behavior in which high strontium-90 concentrations correlate with high Columbia River stage, even while average concentrations remain approximately constant. A series of fully saturated reactive transport column experiments have been conducted to investigate the important controls on strontium migration in Hanford groundwater [1]. The experiments were designed to investigate the multicomponent cation exchange behavior of strontium in competition with the cations Na + , Ca +2 , and Mg +2 , the concentration of which differs between river water and groundwater. Reactive transport modeling of the experiments indicates that the Sr +2 selectivity coefficient becomes larger with increasing NaNO 3 concentration, a behavior also shown by the divalent cations Ca +2 and Mg +2 . A new set of column experiments investigates the effect of wetting and drying cycles on strontium- 90 sorption and migration by considering episodic flow in Hanford sediments. In addition, the effect of fluctuating aquifer chemistry as a result of changes in the Columbia River stage on Sr +2 sorption is addressed. Modeling of multicomponent reactive transport under variably saturated conditions is used to interpret the results of the episodic flow/chemistry experiments. [1] Experimental and modeling studies of the migration behavior of strontium in Hanford sediments, USA. C

Calcium versus strontium handling by the heart muscle.

Science.gov (United States)

Hendrych, Michal; Olejnickova, Veronika; Novakova, Marie

2016-01-01

Calcium plays a crucial role in numerous processes in living systems, from both intracellular and intercellular signalling to blood clotting. Calcium can be replaced by strontium in various intracellular processes due to high level of their similarity and strontium thus may serve as a valuable tool for different experimental studies. On the other hand, strontium is also used in clinical medicine and is commonly taken to the human body with food and water. The negative cardiac side effects of strontium therapy of osteoporosis and bone metastases are well known, but still not fully explained. This fact explains enhanced interest in this element and its impact on human body. This article reviews effects of calcium and strontium on several biochemical and physiological processes, with special emphasis on cardiac muscle.

Cheek tooth morphology and ancient mitochondrial DNA of late Pleistocene horses from the western interior of North America: Implications for the taxonomy of North American Late Pleistocene Equus.

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Christina I Barrón-Ortiz

Full Text Available Horses were a dominant component of North American Pleistocene land mammal communities and their remains are well represented in the fossil record. Despite the abundant material available for study, there is still considerable disagreement over the number of species of Equus that inhabited the different regions of the continent and on their taxonomic nomenclature. In this study, we investigated cheek tooth morphology and ancient mtDNA of late Pleistocene Equus specimens from the Western Interior of North America, with the objective of clarifying the species that lived in this region prior to the end-Pleistocene extinction. Based on the morphological and molecular data analyzed, a caballine (Equus ferus and a non-caballine (E. conversidens species were identified from different localities across most of the Western Interior. A second non-caballine species (E. cedralensis was recognized from southern localities based exclusively on the morphological analyses of the cheek teeth. Notably the separation into caballine and non-caballine species was observed in the Bayesian phylogenetic analysis of ancient mtDNA as well as in the geometric morphometric analyses of the upper and lower premolars. Teeth morphologically identified as E. conversidens that yielded ancient mtDNA fall within the New World stilt-legged clade recognized in previous studies and this is the name we apply to this group. Geographic variation in morphology in the caballine species is indicated by statistically different occlusal enamel patterns in the specimens from Bluefish Caves, Yukon Territory, relative to the specimens from the other geographic regions. Whether this represents ecomorphological variation and/or a certain degree of geographic and genetic isolation of these Arctic populations requires further study.

Kinetics of strontium sorption in calcium phosphate

International Nuclear Information System (INIS)

Bacic, S.; Komarov, V.F.; Vukovic, Z.

1989-01-01

Kinetics of strontium sorption by highly dispersed solids: tricalcium phosphate (Ca 3 (PO 4 ) 2 , TCP) and hydroxyapatite (Ca 5 (PO 4 ) 3 )H, HAP) were investigated. Analysis of sorption data was made taking into consideration composition and morphology of ultra micro particles. Conclusion is that the isomorphous strontium impurity is structurally sensitive element for calcium phosphate. It was determined that the beginning of strontium desorption corresponds to the beginning of transformation of the TCP - HAP (author)

Measurement of strontium 90 in the rain fall-out

International Nuclear Information System (INIS)

Suratman; Soedyartomo; Suhartono.

1976-01-01

The procedure of radioactivity measurement of strontium 90 in the rain fallout as well as the measurement of the fallout gross beta activity have been studied. In the preliminary study strontium 90 is separated from other cations especially fission products by fuming nitric acid, and radioactivity measurement is carried out in the form of strontium oxalate. Data of radioactivity measurement of strontium 90 and the gross beta activity in the fallout are given. (author)

The coprecipitation of strontium with hydroxyapatite

International Nuclear Information System (INIS)

Fujino, Osamu

1975-01-01

The distribution behavior of the strontium ion between hydroxyapatite and the parent solution was investigated. The hydroxyapatite was formed by the extremely slow addition of diammonium hydrogenphosphate to solutions of calcium and strontium nitrate buffered with ethylenediamine at 80 0 C. The precipitate yielded a typical X-ray diffraction pattern of hydroxyapatite and had a composition in which the Ca/P molar ratio was 1.67 at pH 6.80. The strontium ion was coprecipitated in the apatite, obeying the Doerner and Hoskins logarithnmic distribution law. The distribution coefficient was scarcely affected by the strontium concentration on the pH value in the parent solution, and had a value of 0.26+-0.02 at 80 0 C. On the other hand, the apparent distribution coefficient was a little affected by such organic anions as acetate, citrate, lactate, glycinate, and glutamate ions. The lattice constants of the precipitates prepared in the research were measured in order to confirm the formation of the solid solutions. (auth.)

Ancient and modern environmental DNA

DEFF Research Database (Denmark)

Pedersen, Mikkel Winther; Overballe-Petersen, Søren; Ermini, Luca

2015-01-01

woolly mammoth in Alaska, and pushed back the dates for spruce survival in Scandinavian ice-free refugia during the last glaciation. More recently, eDNA was used to uncover the past 50 000 years of vegetation history in the Arctic, revealing massive vegetation turnover at the Pleistocene...

Phylotyping and functional analysis of two ancient human microbiomes.

Directory of Open Access Journals (Sweden)

Raúl Y Tito

Full Text Available BACKGROUND: The Human Microbiome Project (HMP is one of the U.S. National Institutes of Health Roadmap for Medical Research. Primary interests of the HMP include the distinctiveness of different gut microbiomes, the factors influencing microbiome diversity, and the functional redundancies of the members of human microbiotas. In this present work, we contribute to these interests by characterizing two extinct human microbiotas. METHODOLOGY/PRINCIPAL FINDINGS: We examine two paleofecal samples originating from cave deposits in Durango Mexico and dating to approximately 1300 years ago. Contamination control is a serious issue in ancient DNA research; we use a novel approach to control contamination. After we determined that each sample originated from a different human, we generated 45 thousand shotgun DNA sequencing reads. The phylotyping and functional analysis of these reads reveals a signature consistent with the modern gut ecology. Interestingly, inter-individual variability for phenotypes but not functional pathways was observed. The two ancient samples have more similar functional profiles to each other than to a recently published profile for modern humans. This similarity could not be explained by a chance sampling of the databases. CONCLUSIONS/SIGNIFICANCE: We conduct a phylotyping and functional analysis of ancient human microbiomes, while providing novel methods to control for DNA contamination and novel hypotheses about past microbiome biogeography. We postulate that natural selection has more of an influence on microbiome functional profiles than it does on the species represented in the microbial ecology. We propose that human microbiomes were more geographically structured during pre-Columbian times than today.

Ion exchange of strontium on synthetic hydroxyapatite

International Nuclear Information System (INIS)

Lazic, S.; Vukovic, Z.

1991-01-01

Adsorption of strontium ions on synthetic hydroxyapatite was examined using both batch and column methods. The apatite was prepared from aqueous solutions and characterized by standard analytical methods. The sample obtained had characteristics of well crystallized stoichiometric hydroxyapatite. The experimental data for sorption of strontium can be very well fitted with Langmuir's adsorption isotherm. It was found that sorption occurs by an ion exchange reaction between strontium ions in solution and calcium ions in apatite. (author) 14 refs.; 5 figs.; 1 tab

Whole genome amplification and microsatellite genotyping of herbarium DNA revealed the identity of an ancient grapevine cultivar

Science.gov (United States)

Malenica, Nenad; Šimon, Silvio; Besendorfer, Višnja; Maletić, Edi; Karoglan Kontić, Jasminka; Pejić, Ivan

2011-09-01

Reconstruction of the grapevine cultivation history has advanced tremendously during the last decade. Identification of grapevine cultivars by using microsatellite DNA markers has mostly become a routine. The parentage of several renowned grapevine cultivars, like Cabernet Sauvignon and Chardonnay, has been elucidated. However, the assembly of a complete grapevine genealogy is not yet possible because missing links might no longer be in cultivation or are even extinct. This problem could be overcome by analyzing ancient DNA from grapevine herbarium specimens and other historical remnants of once cultivated varieties. Here, we present the first successful genotyping of a grapevine herbarium specimen and the identification of the corresponding grapevine cultivar. Using a set of nine grapevine microsatellite markers, in combination with a whole genome amplification procedure, we found the 90-year-old Tribidrag herbarium specimen to display the same microsatellite profile as the popular American cultivar Zinfandel. This work, together with information from several historical documents, provides a new clue of Zinfandel cultivation in Croatia as early as the beginning of fifteenth century, under the native name Tribidrag. Moreover, it emphasizes substantial information potential of existing grapevine and other herbarium collections worldwide.

Ancient DNA and morphometric analysis reveal extinction and replacement of New Zealand's unique black swans.

Science.gov (United States)

Rawlence, Nicolas J; Kardamaki, Afroditi; Easton, Luke J; Tennyson, Alan J D; Scofield, R Paul; Waters, Jonathan M

2017-07-26

Prehistoric human impacts on megafaunal populations have dramatically reshaped ecosystems worldwide. However, the effects of human exploitation on smaller species, such as anatids (ducks, geese, and swans) are less clear. In this study we apply ancient DNA and osteological approaches to reassess the history of Australasia's iconic black swans ( Cygnus atratus ) including the palaeo-behaviour of prehistoric populations. Our study shows that at the time of human colonization, New Zealand housed a genetically, morphologically, and potentially ecologically distinct swan lineage ( C. sumnerensis , Poūwa), divergent from modern (Australian) C. atratus Morphological analyses indicate C. sumnerensis exhibited classic signs of the 'island rule' effect, being larger, and likely flight-reduced compared to C. atratus Our research reveals sudden extinction and replacement events within this anatid species complex, coinciding with recent human colonization of New Zealand. This research highlights the role of anthropogenic processes in rapidly reshaping island ecosystems and raises new questions for avian conservation, ecosystem re-wilding, and de-extinction. © 2017 The Author(s).

Source of Lake Vostok Cations Constrained with Strontium Isotopes

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William Berry Lyons

2016-08-01

Full Text Available Lake Vostok is the largest sub-glacial lake in Antarctica. The primary source of our current knowledge regarding the geochemistry and biology of the lake comes from the analysis of refrozen lake water associated with ice core drilling. Several sources of dissolved ions and particulate matter to the lake have been proposed, including materials from the melted glacier ice, the weathering of underlying geological materials, hydrothermal activity and underlying, ancient evaporitic deposits. A sample of Lake Vostok Type 1 accretion ice has been analyzed for its 87Sr/86Sr signature as well as its major cation and anion and Sr concentrations. The strontium isotope ratio of 0.71655 and the Ca/Sr ratio in the sample strongly indicate that the major source of the Sr is from aluminosilicate minerals from the continental crust. These data imply that at least a portion of the other cations in the Type 1 ice also are derived from continental crustal materials and not hydrothermal activity, the melted glacier ice, or evaporitic sources.

A combined cesium-strontium extraction/recovery process

International Nuclear Information System (INIS)

Horwitz, E.P.; Dietz, M.L.; Jensen, M.P.

1996-01-01

A new solvent extraction process for the simultaneous extraction of cesium and strontium from acidic nitrate media is described. This process uses a solvent formulation comprised of 0.05 M di-t-butylcyclohexano-18-crown-6 (DtBuCH18C6), 0.1 M Crown 100' (a proprietary, cesium-selective derivative of dibenzo-18-crown-6), 1.2 M tributyl phosphate (TBP), and 5% (v/v) lauryl nitrile in an isoparaffinic hydrocarbon diluent. Distribution ratios for cesium and strontium from 4 M nitric acid are 4.13 and 3.46, respectively. A benchtop batch countercurrent extraction experiment indicates that >98% of the cesium and strontium initially present in the feed solution can be removed in only four extraction stages. Through proper choice of extraction and strip conditions, extracted cesium and strontium can be recovered either together or individually

Strontium clusters: electronic and geometry shell effects

DEFF Research Database (Denmark)

Lyalin, Andrey G.; Solov'yov, Ilia; Solov'yov, Andrey V.

2008-01-01

charged strontium clusters consisting of up to 14 atoms, average bonding distances, electronic shell closures, binding energies per atom, and spectra of the density of electronic states (DOS). It is demonstrated that the size-evolution of structural and electronic properties of strontium clusters...... is governed by an interplay of the electronic and geometry shell closures. Influence of the electronic shell effects on structural rearrangements can lead to violation of the icosahedral growth motif of strontium clusters. It is shown that the excessive charge essentially affects the optimized geometry...

Leaching of strontium sulfide from produced clinker in conversion furnace

International Nuclear Information System (INIS)

Ghorbanian, S. A.; Salehpour, A. R.; Radpour, S. R.

2009-01-01

Iran is rich in mineral resources one of which is mineral Celestine. Basing on current estimations, the capacity of mineral Celestine is over two million tons, 75-95% of which is strontium sulfate. However; in industries such as Color cathode Ray Tubes, pyrochemical processes, ceramics, paint production, zinc purification processes; strontium sulfate is not a direct feed, rather it is largely consumed in the form of strontium carbonate. Two conventional methods are used to produce strontium carbonate from the sulfate; that is direct reaction and black ash methods. Strontium sulfide, as an intermediate component has a key role in black ash process including strontium sulfate reduction by coke, hence producing and leaching the strontium sulfide by hot water. Finally the reaction of strontium sulfate with sodium carbonate lead to strontium carbonate. In this paper, a system was designed to analyze and optimize the process parameters of strontium sulfide production which is less expensive and available solvent in water. Fundamentally, when strontium sulfide becomes in contact with strontium sulfate; Sr(SH) 2 , and Sr(OH) 2 , are produced. The solubility of strontium sulfide depends on water temperature and the maximum solubility achieved at 90 d egree C . The results showed that in the experimental scale, at water to SrS ratio of 6; they sediment for 45 minutes at 95 d egree C in five operational stages; the separation of 95 and 97.1 percent of imported SrS is possible in effluent of fourth and fifth stages, respectively. Thus; four leaching stages could be recommended for pilot scale plants. Also, the results show that at water to SrS ratio of 8, 40 minutes sedimentation at 85-95 d egree C in one operational stage, the separation of 95 percent separation of inputted SrS, is possible. Solvent leaching process is continued till no smell of sulfur components is felt. It could be used as a key role to determine the number of leaching stages in experiments. Finally, the

Inferring Allele Frequency Trajectories from Ancient DNA Indicates That Selection on a Chicken Gene Coincided with Changes in Medieval Husbandry Practices.

Science.gov (United States)

Loog, Liisa; Thomas, Mark G; Barnett, Ross; Allen, Richard; Sykes, Naomi; Paxinos, Ptolemaios D; Lebrasseur, Ophélie; Dobney, Keith; Peters, Joris; Manica, Andrea; Larson, Greger; Eriksson, Anders

2017-08-01

Ancient DNA provides an opportunity to infer the drivers of natural selection by linking allele frequency changes to temporal shifts in environment or cultural practices. However, analyses have often been hampered by uneven sampling and uncertainties in sample dating, as well as being confounded by demographic processes. Here, we present a Bayesian statistical framework for quantifying the timing and strength of selection using ancient DNA that explicitly addresses these challenges. We applied this method to time series data for two loci: TSHR and BCDO2, both hypothesised to have undergone strong and recent selection in domestic chickens. The derived variant in TSHR, associated with reduced aggression to conspecifics and faster onset of egg laying, shows strong selection beginning around 1,100 years ago, coincident with archaeological evidence for intensified chicken production and documented changes in egg and chicken consumption. To our knowledge, this is the first example of preindustrial domesticate trait selection in response to a historically attested cultural shift in food preference. For BCDO2, we find support for selection, but demonstrate that the recent rise in allele frequency could also have been driven by gene flow from imported Asian chickens during more recent breed formations. Our findings highlight that traits found ubiquitously in modern domestic species may not necessarily have originated during the early stages of domestication. In addition, our results demonstrate the importance of precise estimation of allele frequency trajectories through time for understanding the drivers of selection. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Growth of strontium oxalate crystals in agar–agar gel

Indian Academy of Sciences (India)

Growth of strontium oxalate crystals in agar–agar gel. P V DALAL. ∗ and K B SARAF. Postgraduate Department of Physics, Pratap College, Amalner 425 401, India. MS received 16 March 2008; revised 5 April 2010. Abstract. Single crystals of strontium oxalate have been grown by using strontium chloride and oxalic acid in.

Novel Pharmaceutical Strontium Malonate Influence on Calcium and Strontium Adsorption by Dog Femur and by Dog Teeth in a Four-Week Toxicity Study

DEFF Research Database (Denmark)

Raffalt, Anders Christer; Christgau, Stephan; Andersen, Jens Enevold Thaulov

of osteoporosis. As part of this development the compound was administered in doses of 0 (placebo), 300, 1000 and 3000 mg/kg/day to beagle dogs for a period of 4 weeks. We measured the incorporation of strontium in bone, marrow and teeth in this study. Analysis by inductively coupled plasma mass spectrometry...... marginally higher incorporation of strontium suggesting that saturation levels were reached with the lowest dose level. There was no gender difference in strontium incorporation. Correlations of strontium levels with Sr/Ca-ratio and other important biological parameters were investigated....

Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics

NARCIS (Netherlands)

Paijmans, Johanna L.A.; Barnett, Ross; Gilbert, M. Thomas P.; Zepeda-Mendoza, M. Lisandra; Reumer, Jelle W.F.; de Vos, John; Zazula, Grant; Nagel, Doris; Baryshnikov, Gennady F.; Leonard, Jennifer A.; Rohland, Nadin; Westbury, Michael V.; Barlow, Axel; Hofreiter, Michael

2017-01-01

Saber-toothed cats (Machairodontinae) are among the most widely recognized representatives of the now largely extinct Pleistocene megafauna. However, many aspects of their ecology, evolution, and extinction remain uncertain. Although ancient-DNA studies have led to huge advances in our knowledge of

Genotyping of Capreolus pygargus fossil DNA from Denisova cave reveals phylogenetic relationships between ancient and modern populations.

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Nadezhda V Vorobieva

Full Text Available BACKGROUND: The extant roe deer (Capreolus Gray, 1821 includes two species: the European roe deer (C. capreolus and the Siberian roe deer (C. pygargus that are distinguished by morphological and karyotypical differences. The Siberian roe deer occupies a vast area of Asia and is considerably less studied than the European roe deer. Modern systematics of the Siberian roe deer remain controversial with 4 morphological subspecies. Roe deer fossilized bones are quite abundant in Denisova cave (Altai Mountains, South Siberia, where dozens of both extant and extinct mammalian species from modern Holocene to Middle Pleistocene have been retrieved. METHODOLOGY/PRINCIPAL FINDINGS: We analyzed a 629 bp fragment of the mitochondrial control region from ancient bones of 10 Holocene and four Pleistocene Siberian roe deer from Denisova cave as well as 37 modern specimen belonging to populations from Altai, Tian Shan (Kyrgyzstan, Yakutia, Novosibirsk region and the Russian Far East. Genealogical reconstructions indicated that most Holocene haplotypes were probably ancestral for modern roe deer populations of Western Siberia and Tian Shan. One of the Pleistocene haplotypes was possibly ancestral for modern Yakutian populations, and two extinct Pleistocene haplotypes were close to modern roe deer from Tian Shan and Yakutia. Most modern geographical populations (except for West Siberian Plains are heterogeneous and there is some tentative evidence for structure. However, we did not find any distinct phylogenetic signal characterizing particular subspecies in either modern or ancient samples. CONCLUSION/SIGNIFICANCE: Analysis of mitochondrial DNA from both ancient and modern samples of Siberian roe deer shed new light on understanding the evolutionary history of roe deer. Our data indicate that during the last 50,000 years multiple replacements of populations of the Siberian roe deer took place in the Altai Mountains correlating with climatic changes. The Siberian

Ancient DNA analysis of the oldest canid species from the Siberian Arctic and genetic contribution to the domestic dog.

Directory of Open Access Journals (Sweden)

Esther J Lee

Full Text Available Modern Arctic Siberia provides a wealth of resources for archaeological, geological, and paleontological research to investigate the population dynamics of faunal communities from the Pleistocene, particularly as the faunal material coming from permafrost has proven suitable for genetic studies. In order to examine the history of the Canid species in the Siberian Arctic, we carried out genetic analysis of fourteen canid remains from various sites, including the well-documented Upper Paleolithic Yana RHS and Early Holocene Zhokhov Island sites. Estimated age of samples range from as recent as 1,700 years before present (YBP to at least 360,000 YBP for the remains of the extinct wolf, Canis cf. variabilis. In order to examine the genetic affinities of ancient Siberian canids species to the domestic dog and modern wolves, we obtained mitochondrial DNA control region sequences and compared them to published ancient and modern canid sequences. The older canid specimens illustrate affinities with pre-domestic dog/wolf lineages while others appear in the major phylogenetic clades of domestic dogs. Our results suggest a European origin of domestic dog may not be conclusive and illustrates an emerging complexity of genetic contribution of regional wolf breeds to the modern Canis gene pool.

Insights into Modern Human Prehistory Using Ancient Genomes.

Science.gov (United States)

Yang, Melinda A; Fu, Qiaomei

2018-03-01

The genetic relationship of past modern humans to today's populations and each other was largely unknown until recently, when advances in ancient DNA sequencing allowed for unprecedented analysis of the genomes of these early people. These ancient genomes reveal new insights into human prehistory not always observed studying present-day populations, including greater details on the genetic diversity, population structure, and gene flow that characterized past human populations, particularly in early Eurasia, as well as increased insight on the relationship between archaic and modern humans. Here, we review genetic studies on ∼45000- to 7500-year-old individuals associated with mainly preagricultural cultures found in Eurasia, the Americas, and Africa. Copyright © 2017 Elsevier Ltd. All rights reserved.

Investigation of strontium accumulation on ovariectomized Sprague–Dawley rat tibia by micro-PIXE

Energy Technology Data Exchange (ETDEWEB)

Li, X.; Li, Y. [Institute of Modern Physics, Fudan University, Shanghai 200433 (China); Jin, W. [Institute of Radiation Medicine, Fudan University, Shanghai 200032 (China); Zheng, Y.; Rong, C.; Lyu, H. [Institute of Modern Physics, Fudan University, Shanghai 200433 (China); Shen, H., E-mail: haoshen@fudan.edu.cn [Institute of Modern Physics, Fudan University, Shanghai 200433 (China)

2014-08-01

Strontium ranelate is a newly developed drug effective in osteoporosis treatment by depressing bone resorption and maintaining bone formation. Strontium accumulation and distribution are determined in bones of rat after strontium ranelate administration by using micro-PIXE. The investigated rats are divided into four groups: (A) control, (B) ovariectomized, (C) ovariectomized followed with strontium chloride, (D) ovariectomized followed with strontium ranelate. It was found that strontium ranelate would result in increasing trabecular volume and decreasing bone resorption to treat osteoporosis. There are similar contours of calcium and strontium in two-dimensional images, while the strontium is not evenly distributed in the bone. It supports the conclusion that strontium has an affinity for bone and it is capable of replacing calcium atoms as a part of the strontium mechanism in the osteoporosis treatment. The results related to biochemistry are also discussed.

Growth and characterization of pure and lithium doped strontium ...

Indian Academy of Sciences (India)

TECS

Abstract. The effect of lithium ion as dopant on the size and transparency of strontium tartrate tetrahydrate. (SrC4H4O6⋅4H2O) crystals are presented in this paper. Growth of single crystals of undoped and lithium doped strontium tartrate tetrahydrate by controlled diffusion of strontium nitrate into the gel charged with.

Effect of strontium ranelate on bone mineral: Analysis of nanoscale compositional changes.

Science.gov (United States)

Rossi, André L; Moldovan, Simona; Querido, William; Rossi, Alexandre; Werckmann, Jacques; Ersen, Ovidiu; Farina, Marcos

2014-01-01

Strontium ranelate has been used to prevent bone loss and stimulate bone regeneration. Although strontium may integrate into the bone crystal lattice, the chemical and structural modifications of the bone when strontium interacts with the mineral phase are not completely understood. The objective of this study was to evaluate apatite from the mandibles of rats treated with strontium ranelate in the drinking water and compare its characteristics with those from untreated rats and synthetic apatites with and without strontium. Electron energy loss near edge structures from phosphorus, carbon, calcium and strontium were obtained by electron energy loss spectroscopy in a transmission electron microscope. The strontium signal was detected in the biological and synthetic samples containing strontium. The relative quantification of carbon by analyzing the CK edge at an energy loss of ΔE = 284 eV showed an increase in the number of carbonate groups in the bone mineral of treated rats. A synthetic strontium-containing sample used as control did not exhibit a carbon signal. This study showed physicochemical modifications in the bone mineral at the nanoscale caused by the systemic administration of strontium ranelate. Copyright © 2013 Elsevier Ltd. All rights reserved.

A process for the development of strontium hydroxyapatite

International Nuclear Information System (INIS)

Zahra, N; Fayyaz, M; Iqbal, W; Irfan, M; Alam, S

2014-01-01

A procedure for the preparation of Strontium Hydroxyapatite is adapted to produce high purity and better homogeneity ceramic with good Crystallinity. The strontium substituted bone cement has potential for use in orthopedic surgeries. Ionic Strontium (Sr) in humans shares the same physiological pathway as calcium and can be deposited in the mineral structure of the bone. In the present study, a novel concept of preparing Sr-contained Hydroxyapatite bone cement by using a precipitation method is proposed to get an ideal biomaterial that possesses potential degradability and more excellent pharmacological effect. Chemical analysis, Fourier Transform Infra Red analysis and Thermogravimetric/ Differential Scanning Calorimetric studies were conducted on prepared Strontium Hydroxyapatite sample to characterize the incorporation of 15% Sr 2 + into the crystal lattice of Hydroxyapatite. Strontium was quantitatively incorporated into Hydroxyapatite where its substitution for calcium provoked a linear shift of the infrared absorption bands of the hydroxyl and phosphate groups. Thus, the formation of Sr-HAp was confirmed by Chemical Analysis, FT-IR and TGA/DSC results

A process for the development of strontium hydroxyapatite

Science.gov (United States)

Zahra, N.; Fayyaz, M.; Iqbal, W.; Irfan, M.; Alam, S.

2014-06-01

A procedure for the preparation of Strontium Hydroxyapatite is adapted to produce high purity and better homogeneity ceramic with good Crystallinity. The strontium substituted bone cement has potential for use in orthopedic surgeries. Ionic Strontium (Sr) in humans shares the same physiological pathway as calcium and can be deposited in the mineral structure of the bone. In the present study, a novel concept of preparing Sr-contained Hydroxyapatite bone cement by using a precipitation method is proposed to get an ideal biomaterial that possesses potential degradability and more excellent pharmacological effect. Chemical analysis, Fourier Transform Infra Red analysis and Thermogravimetric/ Differential Scanning Calorimetric studies were conducted on prepared Strontium Hydroxyapatite sample to characterize the incorporation of 15% Sr2+ into the crystal lattice of Hydroxyapatite. Strontium was quantitatively incorporated into Hydroxyapatite where its substitution for calcium provoked a linear shift of the infrared absorption bands of the hydroxyl and phosphate groups. Thus, the formation of Sr-HAp was confirmed by Chemical Analysis, FT-IR and TGA/DSC results.

Method for strontium isolation from high-mineralized water

International Nuclear Information System (INIS)

Evzhanov, Kh.; Andriyasova, G.M.

1983-01-01

A method to isolate strontium from high-mineralized waters containing sodium, magnesium, calcium and strontium chlorides, which differ from the prototype method in a considerable decrease in energy consumption with the preservation of a high degree of Sr, Mg and Ca isolation selectivity, has been suggested. According to the method suggested mineralized waters are treated with alkali (NaOH) in the amount of 95-97% of stoichiometry by magnesium, then after separation of magnesium hydroxide precipitate mother liquor is treated with sodium carbonate in the amount of 50-60% of stoichiometry by calcium. After separation of calcium carbonate precipitate mother liquor is treated with NaOH in the amount of 130-135% of stoichiometry by calcium. After separation of calcium hydroxide precipitate from mother liquor by means of sodium carbonate introduction strontium carbonate is isolated. The degree of strontium extraction in the form of SrCO 3 constitutes 90.5% of its content in the initial solution. The method presented can be used for strontium separation from natural and waste waters

A process for the development of strontium hydroxyapatite

International Nuclear Information System (INIS)

Zahra, N.; Fayyaz, M.; Iqbal, W.; Irfan, M.; Alam, S.

2013-01-01

A procedure for the preparation of Strontium Hydroxyapatite is adapted to produce high purity and better homogeneity ceramic with good Crystallinity. The strontium substituted bone cement has potential for use in orthopedic surgeries. Ionic Strontium (Sr) in humans shares the same physiological pathway as calcium and can be deposited in the mineral structure of the bone. In the present study, a novel concept of preparing Sr-contained Hydroxyapatite bone cement by using a precipitation method is proposed to get an ideal biomaterial that possesses potential degradability and more excellent pharmacological effect. Chemical analysis, Fourier Transform Infra Red analysis and Thermogravimetric/ Differential Scanning Calorimetric studies were conducted on prepared Strontium Hydroxyapatite sample to characterize the incorporation of 15 percentage Sr2+ into the crystal lattice of Hydroxyapatite. Strontium was quantitatively incorporated into Hydroxyapatite where its substitution for calcium provoked a linear shift of the infrared absorption bands of the hydroxyl and phosphate groups. Thus, the formation of Sr-HAp was confirmed by Chemical Analysis, FT-IR and TGA/DSC results. (author)

Infrared characterization of strontium titanate thin films

International Nuclear Information System (INIS)

Almeida, B.G.; Pietka, A.; Mendes, J.A.

2004-01-01

Strontium titanate thin films have been prepared at different oxygen pressures with various post-deposition annealing treatments. The films were deposited by pulsed laser ablation at room temperature on Si(0 0 1) substrates with a silica buffer layer. Infrared reflectance measurements were performed in order to determine relevant film parameters such as layer thicknesses and chemical composition. The infrared reflectance spectra were fitted by using adequate dielectric function forms for each layer. The fitting procedure provided the extraction of the dielectric functions of the strontium titanate film, the silica layer and the substrate. The as-deposited films are found to be amorphous, and their infrared spectra present peaks corresponding to modes with high damping constants. As the annealing time and temperature increases the strontium titanate layer becomes more ordered so that it can be described by its SrTiO 3 bulk mode parameters. Also, the silica layer grows along with the ordering of the strontium titanate film, due to oxidation during annealing

Separation of cesium and strontium with zeolites

Energy Technology Data Exchange (ETDEWEB)

Kanno, T; Hashimoto, H [Tohoku Univ., Sendai (Japan). Research Inst. of Mineral Dressing and Metallurgy

1976-06-01

The basic studies of separation of cesium and strontium were made with specimens of zeolite, which are synthetic zeolites A, X and Y; synthetic mordenite; natural mordenite; and clinoptilolite. Ammonium chloride was used as eluent, because it was considered to be a most appropriate eluent in alkaline chlorides. Cesium was easily eluted from the zeolites A and X by ammonium chloride solution, but it was difficult to elute from the synthetic mordenite, natural mordenite and clinoptilolite by ammonium chloride solution, but it was difficult to elute from the zeolites A and X. The zeolite Y is the only one zeolite among these zeolites from which both of cesium and strontium were easily eluted by ammonium chloride solution. Strontium could be separated from cesium with zeolites by formation of Sr-EDTA chelate at pH above 11. In this process, cesium was only exchanged in zeolite column, but strontium flow out from it.

Separation of cesium and strontium with zeolites

International Nuclear Information System (INIS)

Kanno, Takuji; Hashimoto, Hiroyuki

1976-01-01

The basic studies of separation of cesium and strontium were made with specimens of zeolite, which are synthetic zeolites A, X and Y; synthetic mordenite; natural mordenite; and clinoptilolite. Ammonium chloride was used as eluent, because it was considered to be a most appropriate eluent in alkaline chlorides. Cesium was easily eluted from the zeolites A and X by ammonium chloride solution, but it was difficult to elute from the synthetic mordenite, natural mordenite and clinoptilolite by ammonium chloride solution, but it was difficult to elute from the zeolites A and X. The zeolite Y is the only one zeolite among these zeolites from which both of cesium and strontium were easily eluted by ammonium chloride solution. Strontium could be separated from cesium with zeolites by formation of Sr-EDTA chelate at pH above 11. In this process, cesium was only exchanged in zeolite column, but strontium flow out from it. (auth.)

Strontium 90 in silts of the Dnieper cascade water reservoirs

International Nuclear Information System (INIS)

Romanenko, V.D.; Kuz'menko, M.I.; Matvienko, L.P.; Klenus, V.G.; Nasvit, O.I.

1989-01-01

The change of strontium-90 content in water and silts of the Dnieper cascade water reservoirs was analyzed. It was shown, that decrease of strontium-90 content in water in time connected basically with ion exchange adsorption of strontium-90 by residues. A high sorption ability of residues made it possible for radioisotopes to reduce sharply their concentration along depth of soils. The highest concentration of radioisotopes was in the upper layers, enriched by silt. It was ascertained, that strontium-90 migration along depth of residues took place rapidly in the Kiev's water reservoir. Down the cascade strontium-90 content reduced in lower layers of residues as well as in upper layers. 4 tabs

Reduced-graphene-oxide-and-strontium-titanate-based double ...

Indian Academy of Sciences (India)

GO)/strontium titanate were pre- ... R-GO and strontium titanate were synthesized and characterized before ... Microwave absorption capabilities of the composite absorbers were investigated using a .... was backed with a conducting metal sheet.

Amino acid-assisted synthesis of strontium hydroxyapatite bone ...

Indian Academy of Sciences (India)

Strontium-incorporated calcium phosphates show potential in biomedical application, particularly the doped stron- tium may ... shows that the addition of glycine plays an important role in reducing the particle size of strontium hydroxyapatite.

A study on characteristic of selective membrane for strontium analysis

Energy Technology Data Exchange (ETDEWEB)

Moon, Seung Hyun; Choi, Young Woo [Kwang-ju Institute of Science and Technology, Kwangju (Korea)

1999-04-01

In this study, supported liquid membranes (SLMs) using crown ether were prepared in order to separate strontium ion selectively from a calcium contained solution However, at the higher than 3 N nitric acid concentration of a strip solution, stability of a SLM was declined remarkably owing to the hasty loss of carrier impregnated in supporter and, on account of this phenomena, facilitated transports were not accomplished. And DC18C6 as a neutral carrier affected remarkably the selectivity of strontium and the factor determining permeabilities of metal ions was as a role of DNNS. Consequently, in order to be a optimal SLM for the high permeability and the stable selectivity of strontium, concentration of DC18C6 and DNNS should be 0.1 M and 25 mM, respectively and, at this condition, the relative removal ratio of strontium to calcium was 93.3%. And the change of calcium concentration in the feed solution affected the permeability of strontium. In particular, when the ratio of strontium to calcium concentration in the feed solution was in the range of 1/5 - 1/50, strontium could be separated selectively at stable permeabilities. (author). 17 refs., 19 figs., 3 tabs.

Strontium isotopic stratigraphy utilizing authigenic dolomites in hemipelagic sediments

Energy Technology Data Exchange (ETDEWEB)

Baker, P.A. (Duke Univ., Durham, NC (USA)); Kastner, M. (Scripps Institute of Oceanography, La Jolla, CA (USA)); Elderfield, H. (Univ. of Cambridge (England))

1990-05-01

Authigenic dolomites commonly occur in organic-rich, continental margin marine sediments. These dolomites play a key role in the age dating of stratigraphic sections. The dolomites often are the only lithology amenable to paleomagnetic stratigraphy; they preserve siliceous microfossils against diagenetic; recrystallization, and provide useful strontium isotopic stratigraphic ages. Several potential sources of error frequently are unique to the use of authigenic dolomites in the strontium isotope methods. (1) The dolomites occur as cements of the host lithology, hence, they are not a pure phase. Potentially important contaminants during analysis include gypsum clay minerals, feldspars, and iron and manganese oxides. Strontium may occur as a structural substituent ion in these minerals or as a surface-adsorbed ion. Various leaching techniques have been tested to isolate dolomitic strontium. Purer dolomites and strontium-enriched dolomites often can be selected to ease these problems. (2) The dolomites form after the deposition of the host sediment, therefore, they record the diagenetic age not the depositional age. The stable isotopic composition of the dolomites can aid in selection of early formed samples. (3) The dolomites record pore-water strontium isotope compositions, not seawater isotopic compositions. This problem is also minimized by choosing dolomites formed near the sediment-water interface. (4) The dolomites formed near the sediment-water interface originated as rotodolomites and undergo subsequent burial diagenesis, creating a potential for later strontium isotope exchange. This problem is minimized by selecting fresh samples from the interior of nearly impermeable beds and nodules. Results from the Miocene Monterey Formation of California and from the Eocene through Pliocene Pisco basin of Peru show that authigenic dolomites can provide useful strontium isotopic age estimates.

Strontium-90 (90Sr) determination using liquid scintillation counting

International Nuclear Information System (INIS)

Cheberle, L.T.V.; Rosa, M.M.L.; Ferreira, M.T.; Taddei, M.H.T.

2015-01-01

This procedure describes a method for separation and measurement of strontium 90 Sr in water, soils, and biological samples. Water samples may be concentrated using evaporation or calcium phosphate coprecipitation. Soils and biological materials must be dissolved using wet digestion. Tracers and carriers must be added before the attack. Radioactive strontium is separated employing a specific resin before determination by liquid scintillation counting using the double energetic window method. The resin is used to concentrate strontium from samples. Stable strontium is used to monitor method yields and correct results to improve precision and accuracy. The presence of elemental strontium in the sample may bias the gravimetric yield determination. If it is suspected that natural strontium is present in the sample, its concentration should be determined by a suitable means (ICP), and the yield calculation properly modified. Sr-Spec resin with an 8M HNO 3 load solution is used to effectively remove 140 Ba and 40 K isotopes, as well as other interferences from the matrix. Tetravalent plutonium, neptunium, cerium and ruthenium, however, are not removed using nitric acid. The radiochemical procedure was tested using PROCORAD intercomparison exercises and PNI samples. (author)

The Strontium Isotope Record of Zavkhan Terrane Carbonates: Strontium Isotope Stability Through the Ediacaran-Cambrian Transition

OpenAIRE

Petach, Tanya N.

2015-01-01

First order trends in the strontium isotopic (87Sr/86Sr) composition of seawater are controlled by radiogenic inputs from the continent and non-radiogenic inputs from exchange at mid-ocean ridges. Carbonates precipitated in seawater preserve trace amounts of strontium that record this isotope ratio and therefore record the relative importance of mid-ocean ridge and weathering chemical inputs to sea water composition. It has been proposed that environmental changes during the Ediacaran-Cambria...

Complete mtDNA genomes of Filipino ethnolinguistic groups: a melting pot of recent and ancient lineages in the Asia-Pacific region

Science.gov (United States)

Delfin, Frederick; Min-Shan Ko, Albert; Li, Mingkun; Gunnarsdóttir, Ellen D; Tabbada, Kristina A; Salvador, Jazelyn M; Calacal, Gayvelline C; Sagum, Minerva S; Datar, Francisco A; Padilla, Sabino G; De Ungria, Maria Corazon A; Stoneking, Mark

2014-01-01

The Philippines is a strategic point in the Asia-Pacific region for the study of human diversity, history and origins, as it is a cross-road for human migrations and consequently exhibits enormous ethnolinguistic diversity. Following on a previous in-depth study of Y-chromosome variation, here we provide new insights into the maternal genetic history of Filipino ethnolinguistic groups by surveying complete mitochondrial DNA (mtDNA) genomes from a total of 14 groups (11 groups in this study and 3 groups previously published) including previously published mtDNA hypervariable segment (HVS) data from Filipino regional center groups. Comparison of HVS data indicate genetic differences between ethnolinguistic and regional center groups. The complete mtDNA genomes of 14 ethnolinguistic groups reveal genetic aspects consistent with the Y-chromosome, namely: diversity and heterogeneity of groups, no support for a simple dichotomy between Negrito and non-Negrito groups, and different genetic affinities with Asia-Pacific groups that are both ancient and recent. Although some mtDNA haplogroups can be associated with the Austronesian expansion, there are others that associate with South Asia, Near Oceania and Australia that are consistent with a southern migration route for ethnolinguistic group ancestors into the Asia-Pacific, with a timeline that overlaps with the initial colonization of the Asia-Pacific region, the initial colonization of the Philippines and a possible separate post-colonization migration into the Philippine archipelago. PMID:23756438

Mitochondrial DNA variation in the Viking age population of Norway.

Science.gov (United States)

Krzewińska, Maja; Bjørnstad, Gro; Skoglund, Pontus; Olason, Pall Isolfur; Bill, Jan; Götherström, Anders; Hagelberg, Erika

2015-01-19

The medieval Norsemen or Vikings had an important biological and cultural impact on many parts of Europe through raids, colonization and trade, from about AD 793 to 1066. To help understand the genetic affinities of the ancient Norsemen, and their genetic contribution to the gene pool of other Europeans, we analysed DNA markers in Late Iron Age skeletal remains from Norway. DNA was extracted from 80 individuals, and mitochondrial DNA polymorphisms were detected by next-generation sequencing. The sequences of 45 ancient Norwegians were verified as genuine through the identification of damage patterns characteristic of ancient DNA. The ancient Norwegians were genetically similar to previously analysed ancient Icelanders, and to present-day Shetland and Orkney Islanders, Norwegians, Swedes, Scots, English, German and French. The Viking Age population had higher frequencies of K*, U*, V* and I* haplogroups than their modern counterparts, but a lower proportion of T* and H* haplogroups. Three individuals carried haplotypes that are rare in Norway today (U5b1b1, Hg A* and an uncommon variant of H*). Our combined analyses indicate that Norse women were important agents in the overseas expansion and settlement of the Vikings, and that women from the Orkneys and Western Isles contributed to the colonization of Iceland. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Seawater strontium isotopes, acid rain, and the Cretaceous-Tertiary boundary

Science.gov (United States)

Macdougall, J. D.

1988-01-01

A large bolide impact at the end of the Cretaceous would have produced significant amounts of nitrogen oxides by shock heating of the atmosphere. The resulting acid precipitation would have increased continental weathering greatly and could be an explanation for the observed high ratio of strontium-87 to strontium-86 in seawater at about this time, due to the dissolution of large amounts of strontium from the continental crust. Spikes to high values in the seawater strontium isotope record at other times may reflect similar episodes.

Genotyping of ancient Mycobacterium tuberculosis strains reveals historic genetic diversity.

Science.gov (United States)

Müller, Romy; Roberts, Charlotte A; Brown, Terence A

2014-04-22

The evolutionary history of the Mycobacterium tuberculosis complex (MTBC) has previously been studied by analysis of sequence diversity in extant strains, but not addressed by direct examination of strain genotypes in archaeological remains. Here, we use ancient DNA sequencing to type 11 single nucleotide polymorphisms and two large sequence polymorphisms in the MTBC strains present in 10 archaeological samples from skeletons from Britain and Europe dating to the second-nineteenth centuries AD. The results enable us to assign the strains to groupings and lineages recognized in the extant MTBC. We show that at least during the eighteenth-nineteenth centuries AD, strains of M. tuberculosis belonging to different genetic groups were present in Britain at the same time, possibly even at a single location, and we present evidence for a mixed infection in at least one individual. Our study shows that ancient DNA typing applied to multiple samples can provide sufficiently detailed information to contribute to both archaeological and evolutionary knowledge of the history of tuberculosis.

Strontium ranelate for preventing and treating postmenopausal osteoporosis.

Science.gov (United States)

O'Donnell, S; Cranney, A; Wells, G A; Adachi, J D; Reginster, J Y

2006-10-18

Strontium ranelate is a new treatment for osteoporosis therefore, its benefits and harms need to be known. To determine the efficacy and safety of strontium ranelate for the treatment and prevention of postmenopausal osteoporosis. We searched MEDLINE (1996 to March 2005), EMBASE (1996 to week 9 2005), the Cochrane Library (1996 to Issue 1 2005), reference lists of relevant articles and conference proceedings from the last two years. Additional data was sought from authors. We included randomized controlled trials (RCTs) of at least one year duration comparing strontium ranelate versus placebo reporting fracture incidence, bone mineral density (BMD), health related quality of life or safety in postmenopausal women. Treatment (versus prevention) population was defined as women with prevalent vertebral fractures and/or lumbar spine BMD T score gastritis or death. Additional data suggests that the risk of vascular and nervous system side-effects is slightly increased with taking 2 g of strontium ranelate daily over three to four years. There is silver level evidence (www.cochranemsk.org) to support the efficacy of strontium ranelate for the reduction of fractures (vertebral and to a lesser extent non-vertebral) in postmenopausal osteoporotic women and an increase in BMD in postmenopausal women with/without osteoporosis. Diarrhea may occur however, adverse events leading to study withdrawal were not significantly increased with taking 2 g of strontium ranelate daily. Potential vascular and neurological side-effects need to be further explored.

Strontium-90 at the Hanford Site and its ecological implications

International Nuclear Information System (INIS)

RE Peterson; TM Poston

2000-01-01

Strontium-90, a radioactive contaminant from historical operations at the U.S. Department of Energy (DOE) Hanford Site, enters the Columbia River at several locations associated with former plutonium production reactors at the Site. Strontium-90 is of concern to humans and the environment because of its moderately long half-life (29.1 years), its potential for concentrating in bone tissue, and its relatively high energy of beta decay. Although strontium-90 in the environment is not a new issue for the Hanford Site, recent studies of near-river vegetation along the shoreline near the 100 Areas raised public concern about the possibility of strontium-90-contaminated groundwater reaching the riverbed and fall chinook salmon redds. To address these concerns, DOE asked Pacific Northwest National Laboratory (PNNL) to prepare this report on strontium-90, its distribution in groundwater, how and where it enters the river, and its potential ecological impacts, particularly with respect to fall chinook salmon. The purpose of the report is to characterize groundwater contaminants in the near-shore environment and to assess the potential for ecological impact using salmon embryos, one of the most sensitive ecological indicators for aquatic organisms. Section 2.0 of the report provides background information on strontium-90 at the Hanford Site related to historical operations. Public access to information on strontium-90 also is described. Section 3.0 focuses on key issues associated with strontium-90 contamination in groundwater that discharges in the Hanford Reach. The occurrence and distribution of fall chinook salmon redds in the Hanford Reach and characteristics of salmon spawning are described in Section 4.0. Section 5.0 describes the regulatory standards and criteria used to set action levels for strontium-90. Recommendations for initiating additional monitoring and remedial action associated with strontium-90 contamination at the Hanford Site are presented in Section 6

Strontium-90 at the Hanford Site and its ecological implications

Energy Technology Data Exchange (ETDEWEB)

RE Peterson; TM Poston

2000-05-22

Strontium-90, a radioactive contaminant from historical operations at the U.S. Department of Energy (DOE) Hanford Site, enters the Columbia River at several locations associated with former plutonium production reactors at the Site. Strontium-90 is of concern to humans and the environment because of its moderately long half-life (29.1 years), its potential for concentrating in bone tissue, and its relatively high energy of beta decay. Although strontium-90 in the environment is not a new issue for the Hanford Site, recent studies of near-river vegetation along the shoreline near the 100 Areas raised public concern about the possibility of strontium-90-contaminated groundwater reaching the riverbed and fall chinook salmon redds. To address these concerns, DOE asked Pacific Northwest National Laboratory (PNNL) to prepare this report on strontium-90, its distribution in groundwater, how and where it enters the river, and its potential ecological impacts, particularly with respect to fall chinook salmon. The purpose of the report is to characterize groundwater contaminants in the near-shore environment and to assess the potential for ecological impact using salmon embryos, one of the most sensitive ecological indicators for aquatic organisms. Section 2.0 of the report provides background information on strontium-90 at the Hanford Site related to historical operations. Public access to information on strontium-90 also is described. Section 3.0 focuses on key issues associated with strontium-90 contamination in groundwater that discharges in the Hanford Reach. The occurrence and distribution of fall chinook salmon redds in the Hanford Reach and characteristics of salmon spawning are described in Section 4.0. Section 5.0 describes the regulatory standards and criteria used to set action levels for strontium-90. Recommendations for initiating additional monitoring and remedial action associated with strontium-90 contamination at the Hanford Site are presented in Section 6

Single gene retrieval from thermally degraded DNA

Indian Academy of Sciences (India)

To simulate single gene retrieval from ancient DNA, several related factors have been investigated. By monitoring a 889 bp polymerase chain reaction (PCR) product and genomic DNA degradation, we find that heat and oxygen (especially heat) are both crucial factors influencing DNA degradation. The heat influence ...

Strontium 90 in Swedish dairy milk 1978

International Nuclear Information System (INIS)

Gillberg-Wickman, M.; Oestergren, I.

1980-01-01

The contamination of strontium-90 in Swedish milk during 1978 is practically the same as in 1977. The country-wide mean ratio of strontium-90 to calcium in milk is 0.12 Bq 90 Sr(gCa) -1 , based on monthly determinations of samples obtained from 8 dairy plants situated throughout the country. (author)

Cesium and Strontium Separation Technologies Literature Review

Energy Technology Data Exchange (ETDEWEB)

T. A. Todd; T. A. Todd; J. D. Law; R. S. Herbst

2004-03-01

Integral to the Advanced Fuel Cycle Initiative (AFCI) Program’s proposed closed nuclear fuel cycle, the fission products cesium and strontium in the dissolved spent nuclear fuel stream are to be separated and managed separately. A comprehensive literature survey is presented to identify cesium and strontium separation technologies that have the highest potential and to focus research and development efforts on these technologies. Removal of these high-heat-emitting fission products reduces the radiation fields in subsequent fuel cycle reprocessing streams and provides a significant short-term (100 yr) heat source reduction in the repository. This, along with separation of actinides, may provide a substantial future improvement in the amount of fuel that could be stored in a geologic repository. The survey and review of the candidate cesium and strontium separation technologies are presented herein. Because the AFCI program intends to manage cesium and strontium together, technologies that simultaneously separate both elements are of the greatest interest, relative to technologies that separate only one of the two elements.

Ancient DNA Analysis Suggests Negligible Impact of the Wari Empire Expansion in Peru's Central Coast during the Middle Horizon.

Science.gov (United States)

Valverde, Guido; Barreto Romero, María Inés; Flores Espinoza, Isabel; Cooper, Alan; Fehren-Schmitz, Lars; Llamas, Bastien; Haak, Wolfgang

2016-01-01

The analysis of ancient human DNA from South America allows the exploration of pre-Columbian population history through time and to directly test hypotheses about cultural and demographic evolution. The Middle Horizon (650-1100 AD) represents a major transitional period in the Central Andes, which is associated with the development and expansion of ancient Andean empires such as Wari and Tiwanaku. These empires facilitated a series of interregional interactions and socio-political changes, which likely played an important role in shaping the region's demographic and cultural profiles. We analyzed individuals from three successive pre-Columbian cultures present at the Huaca Pucllana archaeological site in Lima, Peru: Lima (Early Intermediate Period, 500-700 AD), Wari (Middle Horizon, 800-1000 AD) and Ychsma (Late Intermediate Period, 1000-1450 AD). We sequenced 34 complete mitochondrial genomes to investigate the potential genetic impact of the Wari Empire in the Central Coast of Peru. The results indicate that genetic diversity shifted only slightly through time, ruling out a complete population discontinuity or replacement driven by the Wari imperialist hegemony, at least in the region around present-day Lima. However, we caution that the very subtle genetic contribution of Wari imperialism at the particular Huaca Pucllana archaeological site might not be representative for the entire Wari territory in the Peruvian Central Coast.

Ancient DNA Analysis Suggests Negligible Impact of the Wari Empire Expansion in Peru's Central Coast during the Middle Horizon.

Directory of Open Access Journals (Sweden)

Guido Valverde

Full Text Available The analysis of ancient human DNA from South America allows the exploration of pre-Columbian population history through time and to directly test hypotheses about cultural and demographic evolution. The Middle Horizon (650-1100 AD represents a major transitional period in the Central Andes, which is associated with the development and expansion of ancient Andean empires such as Wari and Tiwanaku. These empires facilitated a series of interregional interactions and socio-political changes, which likely played an important role in shaping the region's demographic and cultural profiles. We analyzed individuals from three successive pre-Columbian cultures present at the Huaca Pucllana archaeological site in Lima, Peru: Lima (Early Intermediate Period, 500-700 AD, Wari (Middle Horizon, 800-1000 AD and Ychsma (Late Intermediate Period, 1000-1450 AD. We sequenced 34 complete mitochondrial genomes to investigate the potential genetic impact of the Wari Empire in the Central Coast of Peru. The results indicate that genetic diversity shifted only slightly through time, ruling out a complete population discontinuity or replacement driven by the Wari imperialist hegemony, at least in the region around present-day Lima. However, we caution that the very subtle genetic contribution of Wari imperialism at the particular Huaca Pucllana archaeological site might not be representative for the entire Wari territory in the Peruvian Central Coast.

Bactericidal strontium-releasing injectable bone cements based on bioactive glasses.

Science.gov (United States)

Brauer, Delia S; Karpukhina, Natalia; Kedia, Gopal; Bhat, Aditya; Law, Robert V; Radecka, Izabela; Hill, Robert G

2013-01-06

Strontium-releasing injectable bone cements may have the potential to prevent implant-related infections through the bactericidal action of strontium, while enhancing bone formation in patients suffering from osteoporosis. A melt-derived bioactive glass (BG) series (SiO2–CaO–CaF2–MgO) with 0–50% of calcium substituted with strontium on a molar base were produced. By mixing glass powder, poly(acrylic acid) and water, cements were obtained which can be delivered by injection and set in situ, giving compressive strength of up to 35 MPa. Strontium release was dependent on BG composition with increasing strontium substitution resulting in higher concentrations in the medium. Bactericidal effects were tested on Staphylococcus aureus and Streptococcus faecalis; cell counts were reduced by up to three orders of magnitude over 6 days. Results show that bactericidal action can be increased through BG strontium substitution, allowing for the design of novel antimicrobial and bone enhancing cements for use in vertebroplasty or kyphoplasty for treating osteoporosis-related vertebral compression fractures.

Bacterial community in ancient permafrost alluvium at the Mammoth Mountain (Eastern Siberia).

Science.gov (United States)

Brouchkov, Anatoli; Kabilov, Marsel; Filippova, Svetlana; Baturina, Olga; Rogov, Victor; Galchenko, Valery; Mulyukin, Andrey; Fursova, Oksana; Pogorelko, Gennady

2017-12-15

Permanently frozen (approx. 3.5Ma) alluvial Neogene sediments exposed in the Aldan river valley at the Mammoth Mountain (Eastern Siberia) are unique, ancient, and poorly studied permafrost environments. So far, the structure of the indigenous bacterial community has remained unknown. Use of 16S metagenomic analysis with total DNA isolation using DNA Spin Kit for Soil (MO-Bio) and QIAamp DNA Stool Mini Kit (Qiagen) has revealed the major and minor bacterial lineages in the permafrost alluvium sediments. In sum, 61 Operational Taxonomic Units (OTUs) with 31,239 reads (Qiagen kit) and 15,404 reads (Mo-Bio kit) could be assigned to the known taxa. Only three phyla, Bacteroidetes, Proteobacteria and Firmicutes, comprised >5% of the OTUs abundance and accounted for 99% of the total reads. OTUs pertaining to the top families (Chitinophagaceae, Caulobacteraceae, Sphingomonadaceae, Bradyrhizobiaceae, Halomonadaceae) held >90% of reads. The abundance of Actinobacteria was less (0.7%), whereas members of other phyla (Deinococcus-Thermus, Cyanobacteria/Chloroplast, Fusobacteria, and Acidobacteria) constituted a minor fraction of reads. The bacterial community in the studied ancient alluvium differs from other permafrost sediments, mainly by predominance of Bacteroidetes (>52%). The diversity of this preserved bacterial community has the potential to cause effects unknown if prompted to thaw and spread with changing climate. Therefore, this study elicits further reason to study how reintroduction of these ancient bacteria could affect the surrounding ecosystem, including current bacterial species. Copyright © 2017 Elsevier B.V. All rights reserved.

Analysis of radioactive strontium

International Nuclear Information System (INIS)

1977-01-01

In environmental radiation survey, radioactive strontium has been analyzed in compliance with the manual ''Analyzing methods for radioactive strontium'' published in 1960 by the Science and Technology Agency, Japan, and revised in 1963. However, in a past decade, progress and development in analyzing methods and measuring equipments have been significant, therefore the manual was revised in 1974. Major revisions are as follows. (1) Analysis of 90 Sr with long half life was changed to the main theme and that of 89 Sr with short half life became a subordinate one. (2) Measuring criteria and sampling volume were revised. (3) Sample collection method was unified. (4) Analyzing method for soil was improved to NaOH-HCl method which has good recovery rate. (5) 90 Y separation method of simple operation was added for sea water analysis besides EDTA and fuming nitric acid methods. (6) Flame spectrometry for quantitative analysis of stable strontium was revised to atomic absorption spectrometry. The contents of the manual comprises 11 chapters describing introduction, measuring criteria for 90 Sr ( 89 Sr), rain and dust, land water, sea water, soil, sea bottom and river bottom sediments (changed from human urine and human bones), crops, milk (the previous one chapter was divided into two), marine organisms, and everyday foods, respectively. (Wakatsuki, Y.)

Reduced-graphene-oxide-and-strontium-titanate-based double

Indian Academy of Sciences (India)

Microwave-absorbing materials based on reduced graphene oxide (r-GO)/ strontium titanate were prepared by embedding in epoxy matrix. R-GO and strontium titanate were synthesized and characterized before composite fabrication. Microstructures of the constituent elements were studied by scanning electron ...

Cation interdiffusion in polycrystalline calcium and strontium titanate

International Nuclear Information System (INIS)

Butler, E.P.; Jain, H.; Smyth, D.M.

1991-01-01

This paper discusses a method that has been developed to study bulk lattice interdiffusion between calcium and strontium titanate by fabrication of a diffusion couple using cosintering. The measured interdiffusion coefficients, D(C), indicate that strontium impurity diffusion in calcium titanate occurs at a faster rate than calcium impurity diffusion in strontium titanate. These interdiffusion coefficients are composition independent when the concentration of the calcium cation exceeds that of the strontium cation; otherwise D(C) is strongly composition dependent. Investigations into the effect of cation nonstoichiometry give results that are consistent with a defect incorporation reaction in which excess TiO 2 , within the solid solubility limit, produces A-site cation vacancies as compensating defects. The interdiffusion coefficients increase with increasing concentrations of TiO 2 , so it is concluded that interdiffusion of these alkaline-earth cations in their titanates occurs via a vacancy mechanism

Curiously modern DNA for a "250 million-year-old" bacterium.

Science.gov (United States)

Nickle, David C; Learn, Gerald H; Rain, Matthew W; Mullins, James I; Mittler, John E

2002-01-01

Studies of ancient DNA have attracted considerable attention in scientific journals and the popular press. Several of the more extreme claims for ancient DNA have been questioned on biochemical grounds (i.e., DNA surviving longer than expected) and evolutionary grounds (i.e., nucleotide substitution patterns not matching theoretical expectations for ancient DNA). A recent letter to Nature from Vreeland et al. (2000), however, tops all others with respect to age and condition of the specimen. These researchers extracted and cultured a bacterium from an inclusion body from what they claim is a 250 million-year (Myr)-old salt crystal. If substantiated, this observation could fundamentally alter views about bacterial physiology, ecology and evolution. Here we report on molecular evolutionary analyses of the 16S rDNA from this specimen. We find that 2-9-3 differs from a modern halophile, Salibacillus marismortui, by just 3 unambiguous bp in 16S rDNA, versus the approximately 59 bp that would be expected if these bacteria evolved at the same rate as other bacteria. We show, using a Poisson distribution, that unless it can be shown that S. marismortui evolves 5 to 10 times more slowly than other bacteria for which 16S rDNA substitution rates have been established, Vreeland et al.'s claim would be rejected at the 0.05 level. Also, a molecular clock test and a relative rates test fail to substantiate Vreeland et al.'s claim that strain 2-9-3 is a 250-Myr-old bacterium. The report of Vreeland et al. thus falls into a long series of suspect ancient DNA studies.

Isomorfic Substitutions of Calcium by Strontium in Calcium Hydroxyapatite

International Nuclear Information System (INIS)

Christensen, Hilbert

1962-12-01

By means of homogeneous precipitation it has been possible to synthesize crystalline solid solutions of calcium strontium hydroxyapatite from aqueous solutions. The lattice constants for the solid solutions were measured in the range Ca 9 Sr(PO 4 ) 6 (OH) 2 - CaSr 9 (PO 4 ) 6 (OH) 2 . The investigations show that the discrimination of strontium against calcium is considerably smaller than reported elsewhere (1). Strontium is preferentially built into the c-axis direction of the apatite lattice

Morphological control of strontium oxalate particles by PSMA-mediated precipitation reaction

Energy Technology Data Exchange (ETDEWEB)

Yu Jiaguo [State Key Laboratory of Advanced Technology for Material Synthesis and Processing, Wuhan University of Technology, Wuhan 430070 (China)]. E-mail: jiaguoyu@yahoo.com; Tang Hua [State Key Laboratory of Advanced Technology for Material Synthesis and Processing, Wuhan University of Technology, Wuhan 430070 (China); Cheng Bei [State Key Laboratory of Advanced Technology for Material Synthesis and Processing, Wuhan University of Technology, Wuhan 430070 (China)

2005-05-15

In this paper, strontium oxalate particles with different morphologies could be easily obtained by a precipitation reaction of sodium oxalate with strontium chloride in the absence and presence of poly-(styrene-alt-maleic acid) (PSMA). The as-prepared products were characterized with scanning electron microscopy and X-ray diffraction. The effects of pH, aging time and concentration of PSMA on the phase structures and morphologies of the as-prepared strontium oxalate particles were investigated and discussed. The results showed that strontium oxalate particles with various morphologies, such as, bi-pyramids, rods, peanuts, and spherical particles, etc., could be obtained by varying the experimental conditions. PSMA promoted the formation of strontium oxalate dihydrate (SOD) phase. Suitable pH values (pH 7 and 8) favor the formation of the peanut-shaped SrC{sub 2}O{sub 4} particles. This research may provide new insight into the control of morphologies and phase structures of strontium oxalate particles and the biomimetic synthesis of novel inorganic materials.

The globalization of naval provisioning: ancient DNA and stable isotope analyses of stored cod from the wreck of the Mary Rose, AD 1545.

Science.gov (United States)

Hutchinson, William F; Culling, Mark; Orton, David C; Hänfling, Bernd; Lawson Handley, Lori; Hamilton-Dyer, Sheila; O'Connell, Tamsin C; Richards, Michael P; Barrett, James H

2015-09-01

A comparison of ancient DNA (single-nucleotide polymorphisms) and carbon and nitrogen stable isotope evidence suggests that stored cod provisions recovered from the wreck of the Tudor warship Mary Rose, which sank in the Solent, southern England, in 1545, had been caught in northern and transatlantic waters such as the northern North Sea and the fishing grounds of Iceland and Newfoundland. This discovery, underpinned by control data from archaeological samples of cod bones from potential source regions, illuminates the role of naval provisioning in the early development of extensive sea fisheries, with their long-term economic and ecological impacts.

The globalization of naval provisioning: ancient DNA and stable isotope analyses of stored cod from the wreck of the Mary Rose, AD 1545

Science.gov (United States)

Hutchinson, William F.; Culling, Mark; Orton, David C.; Hänfling, Bernd; Lawson Handley, Lori; Hamilton-Dyer, Sheila; O'Connell, Tamsin C.; Richards, Michael P.; Barrett, James H.

2015-01-01

A comparison of ancient DNA (single-nucleotide polymorphisms) and carbon and nitrogen stable isotope evidence suggests that stored cod provisions recovered from the wreck of the Tudor warship Mary Rose, which sank in the Solent, southern England, in 1545, had been caught in northern and transatlantic waters such as the northern North Sea and the fishing grounds of Iceland and Newfoundland. This discovery, underpinned by control data from archaeological samples of cod bones from potential source regions, illuminates the role of naval provisioning in the early development of extensive sea fisheries, with their long-term economic and ecological impacts. PMID:26473047

Surface adsorption in strontium chloride ammines

DEFF Research Database (Denmark)

Ammitzbøll, Andreas L.; Lysgaard, Steen; Klukowska, Agata

2013-01-01

An adsorbed state and its implications on the ab- and desorption kinetics of ammonia in strontium chloride ammine is identified using a combination of ammonia absorption measurements, thermogravimetric analysis, and density functional theory calculations. During thermogravimetric analysis, ammonia...... desorption originating from the adsorbed state is directly observed below the bulk desorption temperature, as confirmed by density functional theory calculations. The desorption enthalpy of the adsorbed state of strontium chloride octa-ammine is determined with both techniques to be around 37-39 k...

Thermal conductivity reduction in oxygen-deficient strontium titanates

NARCIS (Netherlands)

Yu, Choongho; Scullin, Matthew L.; Huijben, Mark; Ramesh, Ramamoorthy; Majumdar, Arun

2008-01-01

We report significant thermal conductivity reduction in oxygen-deficient lanthanum-doped strontium titanate (Sr1−xLaxTiO3−δ) films as compared to unreduced strontium titanates. Our experimental results suggest that the oxygen vacancies could have played an important role in the reduction. This could

The impact of gypsum mine water: A case study on morphology and DNA integrity in the freshwater invertebrate, Gammarus balcanicus

International Nuclear Information System (INIS)

Ternjej, Ivančica; Mihaljević, Zlatko; Ivković, Marija; Previšić, Ana; Stanković, Igor; Maldini, Krešimir; Želježić, Davor; Kopjar, Nevenka

2014-01-01

The aim of our study was to investigate how exposure to heavy metal-rich waters from gypsum mining affects the morphology and levels of primary DNA damage in Gammarus balcanicus. Chemical analysis revealed increased concentrations of metals in water and sediment collected at a site impacted by gypsum mine wastewaters. The specimens also showed elevated total tissue metal levels when compared with the organisms collected at the reference site. The most prominent increase was observed for strontium, followed by iron, nickel, vanadium, aluminium, and manganese. The major pathway of entry for these toxic substances was through the degraded exoskeleton as a consequence of excessive strontium input (unbalanced calcium/strontium ratio) and altered permeability. Disturbed exoskeleton integrity was observed only in individuals collected downstream of the gypsum mine, which was confirmed by electron microscopy. Levels of primary DNA damage were evaluated using the alkaline comet assay in the haemolymph of the specimens. - Highlights: • Our findings suggest toxic potential of gypsum mine wastewaters. • The Gammarus specimens showed elevated total tissue metal levels. • Strontium uptake disturbed exoskeleton integrity. • Corrupted cuticle altered permeability to other toxic substances. • Combined effects of all contaminants caused genotoxicity. - Gypsum mine wastewaters have genotoxic potential and affect the gammarid exoskeleton morphology and biochemistry associated with a high strontium uptake

Maternal and paternal genetic diversity of ancient sheep in Estonia from the Late Bronze Age to the post-medieval period and comparison with other regions in Eurasia.

Science.gov (United States)

Rannamäe, E; Lõugas, L; Niemi, M; Kantanen, J; Maldre, L; Kadõrova, N; Saarma, U

2016-04-01

Sheep were among the first domesticated animals to appear in Estonia in the late Neolithic and became one of the most widespread livestock species in the region from the Late Bronze Age onwards. However, the origin and historical expansion of local sheep populations in Estonia remain poorly understood. Here, we analysed fragments of the hypervariable D-loop of mitochondrial DNA (mtDNA; 213 bp) and the Y-chromosome SRY gene (130 bp) extracted from 31 archaeological sheep bones dated from approximately 800 BC to 1700 AD. The ancient DNA data of sheep from Estonia were compared with ancient sheep from Finland as well as a set of contemporary sheep breeds from across Eurasia in order to place them in a wider phylogeographical context. The analysis shows that: (i) 24 successfully amplified and analysed mtDNA sequences of ancient sheep cluster into two haplogroups, A and B, of which B is predominant; (ii) four of the ancient mtDNA haplotypes are novel; (iii) higher mtDNA haplotype diversity occurred during the Middle Ages as compared to other periods, a fact concordant with the historical context of expanding international trade during the Middle Ages; (iv) the proportion of rarer haplotypes declined during the expansion of sheep from the Near Eastern domestication centre to the northern European region; (v) three male samples showed the presence of the characteristic northern European haplotype, SNP G-oY1 of the Y-chromosome, and represent the earliest occurrence of this haplotype. Our results provide the first insight into the genetic diversity and phylogeographical background of ancient sheep in Estonia and provide basis for further studies on the temporal fluctuations of ancient sheep populations. © 2016 Stichting International Foundation for Animal Genetics.

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Science.gov (United States)

Dabney, Jesse; Knapp, Michael; Glocke, Isabelle; Gansauge, Marie-Theres; Weihmann, Antje; Nickel, Birgit; Valdiosera, Cristina; García, Nuria; Pääbo, Svante; Arsuaga, Juan-Luis; Meyer, Matthias

2013-09-24

Although an inverse relationship is expected in ancient DNA samples between the number of surviving DNA fragments and their length, ancient DNA sequencing libraries are strikingly deficient in molecules shorter than 40 bp. We find that a loss of short molecules can occur during DNA extraction and present an improved silica-based extraction protocol that enables their efficient retrieval. In combination with single-stranded DNA library preparation, this method enabled us to reconstruct the mitochondrial genome sequence from a Middle Pleistocene cave bear (Ursus deningeri) bone excavated at Sima de los Huesos in the Sierra de Atapuerca, Spain. Phylogenetic reconstructions indicate that the U. deningeri sequence forms an early diverging sister lineage to all Western European Late Pleistocene cave bears. Our results prove that authentic ancient DNA can be preserved for hundreds of thousand years outside of permafrost. Moreover, the techniques presented enable the retrieval of phylogenetically informative sequences from samples in which virtually all DNA is diminished to fragments shorter than 50 bp.

Isomorfic Substitutions of Calcium by Strontium in Calcium Hydroxyapatite

Energy Technology Data Exchange (ETDEWEB)

Christensen, Hilbert

1962-12-15

By means of homogeneous precipitation it has been possible to synthesize crystalline solid solutions of calcium strontium hydroxyapatite from aqueous solutions. The lattice constants for the solid solutions were measured in the range Ca{sub 9}Sr(PO{sub 4}){sub 6}(OH){sub 2} - CaSr{sub 9}(PO{sub 4}){sub 6}(OH){sub 2}. The investigations show that the discrimination of strontium against calcium is considerably smaller than reported elsewhere (1). Strontium is preferentially built into the c-axis direction of the apatite lattice.

Sea water strontium isotopes, acid rain, and the cretaceous-tertiary boundary

International Nuclear Information System (INIS)

MacDougall, J.D.

1988-01-01

A large bolide impact at the end of the Cretaceous would have produced significant amounts of nitrogen oxides by shock heating of the atmosphere. The resulting acid precipitation would have increased continental weathering greatly and could be an explanation for the observed high ratio of strontium-87 to strontium-86 in sea water at about this time, due to the dissolution of large amounts of strontium from the continental crust. Spikes to high values in the sea water strontium isotope record at other times may reflect similar episodes. 17 references, 1 figure, 1 table

Strontium Promotes Cementoblasts Differentiation through Inhibiting Sclerostin Expression In Vitro

Directory of Open Access Journals (Sweden)

Xingfu Bao

2014-01-01

Full Text Available Cementogenesis, performed by cementoblasts, is important for the repair of root resorption caused by orthodontic treatment. Based on recent studies, strontium has been applied for osteoporosis treatment due to its positive effect on osteoblasts. Although promising, the effect of strontium on cementoblasts is still unclear. So the aim of this research was to clarify and investigate the effect of strontium on cementogenesis via employing cementoblasts as model. A series of experiments including MTT, alkaline phosphatase activity, gene analysis, alizarin red staining, and western blot were carried out to evaluate the proliferation and differentiation of cementoblasts. In addition, expression of sclerostin was checked to analyze the possible mechanism. Our results show that strontium inhibits the proliferation of cementoblasts with a dose dependent manner; however, it can promote the differentiation of cementoblasts via downregulating sclerostin expression. Taking together, strontium may facilitate cementogenesis and benefit the treatment of root resorption at a low dose.

Pathogens and host immunity in the ancient human oral cavity

Science.gov (United States)

Warinner, Christina; Matias Rodrigues, João F.; Vyas, Rounak; Trachsel, Christian; Shved, Natallia; Grossmann, Jonas; Radini, Anita; Hancock, Y.; Tito, Raul Y.; Fiddyment, Sarah; Speller, Camilla; Hendy, Jessica; Charlton, Sophy; Luder, Hans Ulrich; Salazar-García, Domingo C.; Eppler, Elisabeth; Seiler, Roger; Hansen, Lars; Samaniego Castruita, José Alfredo; Barkow-Oesterreicher, Simon; Teoh, Kai Yik; Kelstrup, Christian; Olsen, Jesper V.; Nanni, Paolo; Kawai, Toshihisa; Willerslev, Eske; von Mering, Christian; Lewis, Cecil M.; Collins, Matthew J.; Gilbert, M. Thomas P.; Rühli, Frank; Cappellini, Enrico

2014-01-01

Calcified dental plaque (dental calculus) preserves for millennia and entraps biomolecules from all domains of life and viruses. We report the first high-resolution taxonomic and protein functional characterization of the ancient oral microbiome and demonstrate that the oral cavity has long served as a reservoir for bacteria implicated in both local and systemic disease. We characterize: (i) the ancient oral microbiome in a diseased state, (ii) 40 opportunistic pathogens, (iii) the first evidence of ancient human-associated putative antibiotic resistance genes, (iv) a genome reconstruction of the periodontal pathogen Tannerella forsythia, (v) 239 bacterial and 43 human proteins, allowing confirmation of a long-term association between host immune factors, “red-complex” pathogens, and periodontal disease, and (vi) DNA sequences matching dietary sources. Directly datable and nearly ubiquitous, dental calculus permits the simultaneous investigation of pathogen activity, host immunity, and diet, thereby extending the direct investigation of common diseases into the human evolutionary past. PMID:24562188

Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains

DEFF Research Database (Denmark)

Wales, Nathan; Andersen, Kenneth; Cappellini, Enrico

2014-01-01

Ancient DNA (aDNA) recovered from archaeobotanical remains can provide key insights into many prominent archaeological research questions, including processes of domestication, past subsistence strategies, and human interactions with the environment. However, it is often difficult to isolate a...... extracted from non-charred ancient plant remains. Based upon the criteria of resistance to enzymatic inhibition, behavior in quantitative real-time PCR, replication fidelity, and compatibility with aDNA damage, we conclude these polymerases have nuanced properties, requiring researchers to make educated...... on the interactions between humans and past plant communities....

Next-generation sequencing offers new insights into DNA degradation

DEFF Research Database (Denmark)

Overballe-Petersen, Søren; Orlando, Ludovic Antoine Alexandre; Willerslev, Eske

2012-01-01

The processes underlying DNA degradation are central to various disciplines, including cancer research, forensics and archaeology. The sequencing of ancient DNA molecules on next-generation sequencing platforms provides direct measurements of cytosine deamination, depurination and fragmentation...... rates that previously were obtained only from extrapolations of results from in vitro kinetic experiments performed over short timescales. For example, recent next-generation sequencing of ancient DNA reveals purine bases as one of the main targets of postmortem hydrolytic damage, through base...... elimination and strand breakage. It also shows substantially increased rates of DNA base-loss at guanosine. In this review, we argue that the latter results from an electron resonance structure unique to guanosine rather than adenosine having an extra resonance structure over guanosine as previously suggested....

Did the ancient Egyptians migrate to ancient Nigeria?

Directory of Open Access Journals (Sweden)

Jock M. Agai

2014-01-01

Full Text Available Literatures concerning the history of West African peoples published from 1900 to 1970 debate�the possible migrations of the Egyptians into West Africa. Writers like Samuel Johnson and�Lucas Olumide believe that the ancient Egyptians penetrated through ancient Nigeria but Leo�Frobenius and Geoffrey Parrinder frowned at this opinion. Using the works of these early�20th century writers of West African history together with a Yoruba legend which teaches�about the origin of their earliest ancestor(s, this researcher investigates the theories that the�ancient Egyptians had contact with the ancient Nigerians and particularly with the Yorubas.Intradisciplinary and/or interdisciplinary implications: There is an existing ideology�amongst the Yorubas and other writers of Yoruba history that the original ancestors of�the Yorubas originated in ancient Egypt hence there was migration between Egypt and�Yorubaland. This researcher contends that even if there was migration between Egypt and�Nigeria, such migration did not take place during the predynastic and dynastic period as�speculated by some scholars. The subject is open for further research.

Microwave-assisted fabrication of strontium doped apatite coating on Ti6Al4V

Energy Technology Data Exchange (ETDEWEB)

Zhou, Huan, E-mail: huanzhou@cczu.edu.cn [Institute of Biomedical Engineering and Health Sciences, Changzhou University, Changzhou, Jiangsu 213164 (China); Kong, Shiqin [Institute of Biomedical Engineering and Health Sciences, Changzhou University, Changzhou, Jiangsu 213164 (China); School of Materials Science and Engineering, Changzhou University, Changzhou, Jiangsu 213164 (China); Pan, Yan; Zhang, Zhiguo [Institute of Biomedical Engineering and Health Sciences, Changzhou University, Changzhou, Jiangsu 213164 (China); Deng, Linhong, E-mail: dlh@cczu.edu.cn [Institute of Biomedical Engineering and Health Sciences, Changzhou University, Changzhou, Jiangsu 213164 (China)

2015-11-01

Strontium has been shown to be a beneficial dopant to calcium phosphates when incorporated at nontoxic level. In the present work we studied the possibility of solution derived doping strontium into calcium phosphate coatings on titanium alloy Ti6Al4V based implants by a recently reported microwave-assisted method. By using this method strontium doped calcium phosphate nuclei were deposited to pretreated titanium alloy surface dot by dot to compose a crack-free coating layer. The presence of strontium in solution led to reduced roughness of the coating and finer nucleus size formed. In vitro study found that proliferation and differentiation of osteoblast cells seeded on the coating were influenced by strontium content in coatings, showing an increasing followed by a decreasing behavior with increasing substitution of calcium by strontium. It is suggested that this new microwave-assisted strontium doped calcium phosphate coatings may have great potential in implant modification. - Highlights: • Strontium doped calcium phosphate coating is deposited with microwave irradiation. • Increase of strontium reduces coating roughness and results in finer nucleus size. • Proliferation and differentiation of osteoblasts depend on doped strontium content.

Depression Mechanism of Strontium Ions in Bastnaesite Flotation with Salicylhydroxamic Acid as Collector

Directory of Open Access Journals (Sweden)

Shiming Cao

2018-02-01

Full Text Available Metal ions are widely present in flotation pulp. Metal ions change solution chemistry and mineral surface properties, consequently affecting mineral flotation. In this work, the effect of strontium ions on bastnaesite flotation with salicylhydroxamic acid (SHA was investigated by microflotation tests, contact angle measurements, zeta-potential measurements, and X-ray photoelectron spectroscopy (XPS analysis. Microflotation tests confirmed that the addition of strontium ions decreased bastnaesite floatability, compared with that in the absence of strontium ions. Contact angle measurements suggested that the pretreatment of strontium ions decreased SHA adsorption. Zeta potential measurements confirmed that the bastnaesite was depressed by the adsorption of positively charged strontium species, and the lower adsorption capacity of SHA onto the bastnaesite surfaces was obtained after modifying with strontium ions. XPS analysis demonstrated that strontium ions adsorbed onto the bastnaesite surfaces through the interaction between strontium ions and oxygen atoms of surface ≡ CeOH 0 groups. This occurrence hindered surface Ce sites which chelated with SHA and therefore, decreased bastnaesite floatability.

Ancient DNA Analysis Suggests Negligible Impact of the Wari Empire Expansion in Peru’s Central Coast during the Middle Horizon

Science.gov (United States)

Barreto Romero, María Inés; Flores Espinoza, Isabel; Cooper, Alan; Fehren-Schmitz, Lars

2016-01-01

The analysis of ancient human DNA from South America allows the exploration of pre-Columbian population history through time and to directly test hypotheses about cultural and demographic evolution. The Middle Horizon (650–1100 AD) represents a major transitional period in the Central Andes, which is associated with the development and expansion of ancient Andean empires such as Wari and Tiwanaku. These empires facilitated a series of interregional interactions and socio-political changes, which likely played an important role in shaping the region’s demographic and cultural profiles. We analyzed individuals from three successive pre-Columbian cultures present at the Huaca Pucllana archaeological site in Lima, Peru: Lima (Early Intermediate Period, 500–700 AD), Wari (Middle Horizon, 800–1000 AD) and Ychsma (Late Intermediate Period, 1000–1450 AD). We sequenced 34 complete mitochondrial genomes to investigate the potential genetic impact of the Wari Empire in the Central Coast of Peru. The results indicate that genetic diversity shifted only slightly through time, ruling out a complete population discontinuity or replacement driven by the Wari imperialist hegemony, at least in the region around present-day Lima. However, we caution that the very subtle genetic contribution of Wari imperialism at the particular Huaca Pucllana archaeological site might not be representative for the entire Wari territory in the Peruvian Central Coast. PMID:27248693

Strontium-90 and cesium-137 in powdered milk

International Nuclear Information System (INIS)

1977-01-01

Japan Chemical Analysis Center has analysed the strontium-90 and cesium-137 content in powdered milk. The samples were purchased on the open market in Tokyo from the powdered milk producers. The analysis of Strontium-90 and Cesium-137 content was carried out using the method recommended by Science and Technology Agency. (author)

Ancient DNA from European Early Neolithic Farmers Reveals Their Near Eastern Affinities

Science.gov (United States)

Haak, Wolfgang; Balanovsky, Oleg; Sanchez, Juan J.; Koshel, Sergey; Zaporozhchenko, Valery; Adler, Christina J.; Der Sarkissian, Clio S. I.; Brandt, Guido; Schwarz, Carolin; Nicklisch, Nicole; Dresely, Veit; Fritsch, Barbara; Balanovska, Elena; Villems, Richard; Meller, Harald; Alt, Kurt W.; Cooper, Alan

2010-01-01

In Europe, the Neolithic transition (8,000–4,000 b.c.) from hunting and gathering to agricultural communities was one of the most important demographic events since the initial peopling of Europe by anatomically modern humans in the Upper Paleolithic (40,000 b.c.). However, the nature and speed of this transition is a matter of continuing scientific debate in archaeology, anthropology, and human population genetics. To date, inferences about the genetic make up of past populations have mostly been drawn from studies of modern-day Eurasian populations, but increasingly ancient DNA studies offer a direct view of the genetic past. We genetically characterized a population of the earliest farming culture in Central Europe, the Linear Pottery Culture (LBK; 5,500–4,900 calibrated b.c.) and used comprehensive phylogeographic and population genetic analyses to locate its origins within the broader Eurasian region, and to trace potential dispersal routes into Europe. We cloned and sequenced the mitochondrial hypervariable segment I and designed two powerful SNP multiplex PCR systems to generate new mitochondrial and Y-chromosomal data from 21 individuals from a complete LBK graveyard at Derenburg Meerenstieg II in Germany. These results considerably extend the available genetic dataset for the LBK (n = 42) and permit the first detailed genetic analysis of the earliest Neolithic culture in Central Europe (5,500–4,900 calibrated b.c.). We characterized the Neolithic mitochondrial DNA sequence diversity and geographical affinities of the early farmers using a large database of extant Western Eurasian populations (n = 23,394) and a wide range of population genetic analyses including shared haplotype analyses, principal component analyses, multidimensional scaling, geographic mapping of genetic distances, and Bayesian Serial Simcoal analyses. The results reveal that the LBK population shared an affinity with the modern-day Near East and Anatolia, supporting a major

Ancient DNA from European early neolithic farmers reveals their near eastern affinities.

Directory of Open Access Journals (Sweden)

Wolfgang Haak

Full Text Available In Europe, the Neolithic transition (8,000-4,000 B.C. from hunting and gathering to agricultural communities was one of the most important demographic events since the initial peopling of Europe by anatomically modern humans in the Upper Paleolithic (40,000 B.C.. However, the nature and speed of this transition is a matter of continuing scientific debate in archaeology, anthropology, and human population genetics. To date, inferences about the genetic make up of past populations have mostly been drawn from studies of modern-day Eurasian populations, but increasingly ancient DNA studies offer a direct view of the genetic past. We genetically characterized a population of the earliest farming culture in Central Europe, the Linear Pottery Culture (LBK; 5,500-4,900 calibrated B.C. and used comprehensive phylogeographic and population genetic analyses to locate its origins within the broader Eurasian region, and to trace potential dispersal routes into Europe. We cloned and sequenced the mitochondrial hypervariable segment I and designed two powerful SNP multiplex PCR systems to generate new mitochondrial and Y-chromosomal data from 21 individuals from a complete LBK graveyard at Derenburg Meerenstieg II in Germany. These results considerably extend the available genetic dataset for the LBK (n = 42 and permit the first detailed genetic analysis of the earliest Neolithic culture in Central Europe (5,500-4,900 calibrated B.C.. We characterized the Neolithic mitochondrial DNA sequence diversity and geographical affinities of the early farmers using a large database of extant Western Eurasian populations (n = 23,394 and a wide range of population genetic analyses including shared haplotype analyses, principal component analyses, multidimensional scaling, geographic mapping of genetic distances, and Bayesian Serial Simcoal analyses. The results reveal that the LBK population shared an affinity with the modern-day Near East and Anatolia, supporting

Flame Spectrophotometric Determination of Strontium in Water and Biological Material

Energy Technology Data Exchange (ETDEWEB)

Joensson, G

1964-10-15

A flame spectrophotometric method has been developed for the determination of strontium in biological material and water samples. Strontium is determined in the presence of calcium at a wavelength of 4607 A. The intensity of the strontium emission from the sample is increased if n-butanol is added to a solution of the sample in water. With a 6 vol% solution of n-butanol in water, an optimum intensity of 3.5 times that obtained with pure water solution is obtained. Anions and alkali metals which might interfere with the flame spectrophotometric determination are separated from the sample by a simple ion exchange operation. The method allows determination of strontium in solutions down to 0.1{mu}g/ml. In this case the standard deviation is 3.1 % and with a strontium concentration of 1 {mu}g/ml the deviation is 0.9 %. This method has been used for the determination of strontium in samples of varying composition such as bone, meat and skin from fishes, samples of human bones, shell-fish, milk, and water, in which case Sr quantities of 5{mu}g were determined with an analytical error of less than 5 % and Sr{sub q}uantities greater than 10 {mu}g with an error of less than 3 %.

Flame Spectrophotometric Determination of Strontium in Water and Biological Material

International Nuclear Information System (INIS)

Joensson, G.

1964-10-01

A flame spectrophotometric method has been developed for the determination of strontium in biological material and water samples. Strontium is determined in the presence of calcium at a wavelength of 4607 A. The intensity of the strontium emission from the sample is increased if n-butanol is added to a solution of the sample in water. With a 6 vol% solution of n-butanol in water, an optimum intensity of 3.5 times that obtained with pure water solution is obtained. Anions and alkali metals which might interfere with the flame spectrophotometric determination are separated from the sample by a simple ion exchange operation. The method allows determination of strontium in solutions down to 0.1μg/ml. In this case the standard deviation is 3.1 % and with a strontium concentration of 1 μg/ml the deviation is 0.9 %. This method has been used for the determination of strontium in samples of varying composition such as bone, meat and skin from fishes, samples of human bones, shell-fish, milk, and water, in which case Sr quantities of 5μg were determined with an analytical error of less than 5 % and Sr q uantities greater than 10 μg with an error of less than 3 %

Strontium eluting graphene hybrid nanoparticles augment osteogenesis in a 3D tissue scaffold

Science.gov (United States)

Kumar, Sachin; Chatterjee, Kaushik

2015-01-01

The objective of this work was to prepare hybrid nanoparticles of graphene sheets decorated with strontium metallic nanoparticles and demonstrate their advantages in bone tissue engineering. Strontium-decorated reduced graphene oxide (RGO_Sr) hybrid nanoparticles were synthesized by the facile reduction of graphene oxide and strontium nitrate. X-ray diffraction, transmission electron microscopy, and atomic force microscopy revealed that the hybrid particles were composed of RGO sheets decorated with 200-300 nm metallic strontium particles. Thermal gravimetric analysis further confirmed the composition of the hybrid particles as 22 wt% of strontium. Macroporous tissue scaffolds were prepared by incorporating RGO_Sr particles in poly(ε-caprolactone) (PCL). The PCL/RGO_Sr scaffolds were found to elute strontium ions in aqueous medium. Osteoblast proliferation and differentiation was significantly higher in the PCL scaffolds containing the RGO_Sr particles in contrast to neat PCL and PCL/RGO scaffolds. The increased biological activity can be attributed to the release of strontium ions from the hybrid nanoparticles. This study demonstrates that composites prepared using hybrid nanoparticles that elute strontium ions can be used to prepare multifunctional scaffolds with good mechanical and osteoinductive properties. These findings have important implications for designing the next generation of biomaterials for use in tissue regeneration.The objective of this work was to prepare hybrid nanoparticles of graphene sheets decorated with strontium metallic nanoparticles and demonstrate their advantages in bone tissue engineering. Strontium-decorated reduced graphene oxide (RGO_Sr) hybrid nanoparticles were synthesized by the facile reduction of graphene oxide and strontium nitrate. X-ray diffraction, transmission electron microscopy, and atomic force microscopy revealed that the hybrid particles were composed of RGO sheets decorated with 200-300 nm metallic strontium

Genetic data suggests that the Jinggouzi people are associated with the Donghu, an ancient nomadic group of North China.

Science.gov (United States)

Wang, Haijing; Chen, Lu; Ge, Binwen; Zhang, Ye; Zhu, Hong; Zhou, Hui

2012-08-01

Nomadic populations have played a significant role in the history of not only China but also in many nations worldwide. Because they had no written language, an important aspect in the study of these people is the discovery of their tombs. It has been generally accepted that Xiongnu was the first empire created by a nomadic tribe in the 3rd century BC. However, little population genetic information is available concerning the Donghu, another flourishing nomadic tribe at the same period because of the restriction of materials until the Jinggouzi site was excavated. In order to test the genetic characteristics of ancient people in this site and to explore the relationship between Jinggouzis and Donghus, two uniparentally inherited markers were analyzed from 42 human remains in this site, which was located in northern China, dated approximately 2500 years ago. With ancient DNA technology, four mtDNA haplogroups (D, G, C, and M10) and one Y chromosome haplogroup (C) were identified using mitochondrial DNA and Y-chromosome single nucleotide polymorphisms. Those haplogroups are common in North Asia and East Asia. The Jinggouzi people were genetically closest to the Xianbeis in ancient populations and to the Oroqens among extant populations, who were all pastoralists. This might indicate that ancient Jinggouzi people were nomads. Meanwhile, according to the genetic data and the evidences in archaeology, we inferred that Jinggouzi people were associated with Donghu. It is of much value to trace the history of the Donghu tribe and this might show some insight into the ancient nomadic society.

Effect of competing cations on strontium sorption to surficial sediments

International Nuclear Information System (INIS)

Bunde, R.L.; Rosentreter, J.J.

1995-01-01

The following study was conducted to determine strontium distribution coefficients (K d 'S) of a surficial sediment at the Idaho National Engineering Laboratory (INEL), Idaho. Batch experimental techniques were used to determine K d 's which describe the partitioning of a solute between the solution and solid phase. A surficial sediment was mixed with synthesized aqueous solutions designed to chemically simulate wastewater disposed to infiltrations ponds near the Idaho Chemical Processing Plant at the INEL with respect to major ionic character and pH. The effects of variable concentrations of competing cations (sodium, potassium, calcium and magnesium) on strontium sorption were investigated at a fixed pH of 8.00. The pH of the natural system shows no appreciable variation, whereas a marked variability in cation concentration has been noted. Strontium sorption was impacted to a greater degree by the concentration of calcium and magnesium in solution than by the presence of sodium or potassium. However, extreme sodium solution concentrations of 1.0 to 5.0 g/L dramatically reduced strontium sorption. In all cases, strontium K d 's decreased as the concentration of calcium and magnesium in solution increased. Linear isotherm model K d 's ranged from 12.0 to 84.7 mL/g. Analysis of data from these experiments indicated that moderate concentrations of calcium and magnesium (less than 40 mg/L) and high concentrations of sodium (1.0 to 5.0 g/L) in wastewater increase strontium mobility by decreasing the sorption of strontium on surficial sediments beneath infiltration ponds at the INEL

Strontium migration in a crystalline medium: effects of the presence of bentonite colloids.

Science.gov (United States)

Albarran, Nairoby; Missana, Tiziana; García-Gutiérrez, Miguel; Alonso, Ursula; Mingarro, Manuel

2011-03-25

The effects of bentonite colloids on strontium migration in fractured crystalline medium were investigated. We analyzed first the transport behaviour of bentonite colloids alone at different flow rates; then we compared the transport behaviour of strontium as solute and of strontium previously adsorbed onto stable bentonite colloids at a water velocity of approximately 7.1·10(-6)m/s-224m/yr. Experiments with bentonite colloids alone showed that - at the lowest water flow rate used in our experiments (7.1·10(-6)m/s) - approximately 70% of the initially injected colloids were retained in the fracture. Nevertheless, the mobile colloidal fraction, moved through the fracture without retardation, at any flow rate. Bentonite colloids deposited over the fracture surface were identified during post-mortem analyses. The breakthrough curve of strontium as a solute, presented a retardation factor, R(f)~6, in agreement with its sorption onto the granite fracture surface. The breakthrough curve of strontium in the presence of bentonite colloids was much more complex, suggesting additional contributions of colloids to strontium transport. A very small fraction of strontium adsorbed on mobile colloids moved un-retarded (R(f)=1) and this fraction was much lower than the expected, considering the quantity of strontium initially adsorbed onto colloids (90%). This behaviour suggests the hypothesis of strontium sorption reversibility from colloids. On the other hand, bentonite colloids retained within the granite fracture played a major role, contributing to a slower strontium transport in comparison with strontium as a solute. This was shown by a clear peak in the breakthrough curve corresponding to a retardation factor of approximately 20. Copyright © 2010 Elsevier B.V. All rights reserved.

Strontium incorporates at sites critical for bone mineralization in rats with renal failure

International Nuclear Information System (INIS)

Oste, Line; Verberckmoes, Steven C.; Behets, Geert J.; Dams, Geert; Bervoets, An R.; De Broe, Marc E.; D'Haese, Patrick C.; Van Hoof, Viviane O.; Bohic, Sylvain; Drakopoulos, Michael

2007-01-01

We previously demonstrated the development of a mineralization defect during strontium administration and its reversibility after withdrawal in rats with chronic renal failure. Recently, strontium ranelate has been introduced as a therapeutic agent for osteoporosis. However, caution has to be taken, as this bone disorder mainly develops in elderly people who may present a moderately decreased renal function. In order to assess the ultra-structural localization of strontium in bone and thereby to get a better insight into the element's systemic effects on bone, synchrotron-based x-ray micro-fluorescence was applied, which showed that after 2 weeks of strontium loading (2 g l -1 in drinking water) in rats with renal failure, concomitant with the development of impaired mineralization, the element was localized mainly at the outer edge of the mineralized bone, while after longer loading periods, a more homogeneous distribution was found. After washout, strontium was found at sites deeper within the trabeculae, while newly deposited low-strontium-containing mineral was found at the outer edges. Synchrotron x-ray micro-diffraction analysis showed that strontium is incorporated in the apatite crystal lattice through exchange with calcium. The results show that strontium is initially incorporated in bone at sites of active bone mineralization, close to the osteoid/mineralization front.Most likely, strontium binds to matrix proteins serving as crystal nucleation points and by hetero-ionic substitution with calcium within the hydroxyapatite crystals, thereby impairing further hydroxyapatite formation. After withdrawal, strontium is released from these sites, by which mineralization is restored and the previously formed strontium-containing hydroxyapatite is buried under a new layer of mineralized bone. (authors)

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

DEFF Research Database (Denmark)

Pedersen, Jakob Skou; Valen, Eivind; Velazquez, Amhed Missael Vargas

2014-01-01

Epigenetic information is available from contemporary organisms, but is difficult to track back in evolutionary time. Here, we show that genome-wide epigenetic information can be gathered directly from next-generation sequence reads of DNA isolated from ancient remains. Using the genome sequence...... data generated from hair shafts of a 4000-yr-old Paleo-Eskimo belonging to the Saqqaq culture, we generate the first ancient nucleosome map coupled with a genome-wide survey of cytosine methylation levels. The validity of both nucleosome map and methylation levels were confirmed by the recovery...

Photostriction of strontium ruthenate

KAUST Repository

Wei, Tzu-Chiao; Wang, Hsin-Ping; Liu, Heng-Jui; Tsai, Dung-Sheng; Ke, Jr-Jian; Wu, Chung-Lun; Yin, Yu-Peng; Zhan, Qian; Lin, Gong-Ru; Chu, Ying-Hao; He, Jr-Hau

2017-01-01

Transition metal oxides with a perovskite crystal structure exhibit a variety of physical properties associated with the lattice. Among these materials, strontium ruthenate (SrRuO3) displays unusually strong coupling of charge, spin and lattice

Strontium Localization in Bone Tissue Studied by X-Ray Absorption Spectroscopy

DEFF Research Database (Denmark)

Frankær, Christian Grundahl; Raffalt, Anders Christer; Ståhl, Kenny

2014-01-01

Strontium has recently been introduced as a pharmacological agent for the treatment and prevention of osteoporosis. We determined the localization of strontium incorporated into bone matrix from dogs treated with Sr malonate by X-ray absorption spectroscopy. A new approach for analyzing the X...... highly ordered sites, and at least 30 % is located at less ordered sites where only the first solvation shell is resolved, suggesting that strontium is sur- rounded by only oxygen atoms similar to Sr2? in solution. Strontium was furthermore shown to be absorbed in collagen in which it obtains a higher...

Strontium and calcium accumulation in fish as affected by food composition

International Nuclear Information System (INIS)

Ophel, I.L.; Judd, J.M.

1976-01-01

Radioactive tracers ( 85 Sr and 47 Ca) were used to investigate the effects of food composition on the accumulation of strontium and calcium by fish and their discrimination between these two elements. The total amount of calcium assimilated by fish was the same for all experimental conditions. Calcium not obtainable from food was absorbed from the water, even when the water concentration was less than 10 mg Ca/l. The major discriminatory process occurred during direct (gill) uptake from water. Gut uptake provided least discrimination against strontium. Strontium content of fish was closely related to the Sr/Ca ratio in their food. Strontium assimilation was found to be a function of: the Sr/Ca ratios of food and water, the amounts of calcium derived from each source and the biological discrimination against strontium relative to calcium

A combined method for DNA analysis and radiocarbon dating from a single sample.

Science.gov (United States)

Korlević, Petra; Talamo, Sahra; Meyer, Matthias

2018-03-07

Current protocols for ancient DNA and radiocarbon analysis of ancient bones and teeth call for multiple destructive samplings of a given specimen, thereby increasing the extent of undesirable damage to precious archaeological material. Here we present a method that makes it possible to obtain both ancient DNA sequences and radiocarbon dates from the same sample material. This is achieved by releasing DNA from the bone matrix through incubation with either EDTA or phosphate buffer prior to complete demineralization and collagen extraction utilizing the acid-base-acid-gelatinization and ultrafiltration procedure established in most radiocarbon dating laboratories. Using a set of 12 bones of different ages and preservation conditions we demonstrate that on average 89% of the DNA can be released from sample powder with minimal, or 38% without any, detectable collagen loss. We also detect no skews in radiocarbon dates compared to untreated samples. Given the different material demands for radiocarbon dating (500 mg of bone/dentine) and DNA analysis (10-100 mg), combined DNA and collagen extraction not only streamlines the sampling process but also drastically increases the amount of DNA that can be recovered from limited sample material.

Strontium isotope geochemistry of soil and playa deposits near Yucca Mountain, Nevada

International Nuclear Information System (INIS)

Marshall, B.D.; Mahan, S.A.

1994-01-01

The isotopic composition of strontium contained in the carbonate fractions of soils provides an excellent tracer which can be used to test models for their origin. This paper reports data on surface coatings and cements, eolian sediments, playas and alluvial fan soils which help to constrain a model for formation of the extensive calcretes and fault infillings in the Yucca Mountain region. The playas contain carbonate with a wide range of strontium compositions; further work will be required to fully understand their possible contributions to the pedogenic carbonate system. Soils from an alluvial fan to the west of Yucca Mountain show that only small amounts of strontium are derived from a fan draining a carbonate terrane have strontium component. Although much evidence points to an eolian source for at least some of the strontium in the pedogenic carbonates near Yucca Mountain, an additional component or past variation of strontium composition in the eolian source is required to model the pedogenic carbonate system

Influence of granular strontium chloride as additives on some ...

Indian Academy of Sciences (India)

Influence of granular strontium chloride as additives on some electrical and mechanical properties for pure polyvinyl alcohol. A B Elaydy M Hafez ... Keywords. Polyvinyl-alcohol (PVA); granular strontium chloride, SrCl2; a.c. electrical conductivity; dielectric constant; dielectric loss; Young's modulus; creep relaxation curve.

40 CFR 721.10011 - Barium calcium manganese strontium oxide.

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 30 2010-07-01 2010-07-01 false Barium calcium manganese strontium... Specific Chemical Substances § 721.10011 Barium calcium manganese strontium oxide. (a) Chemical substance and significant new uses subject to reporting. (1) The chemical substance identified as barium calcium...

Investigation of Varied Strontium-Transuranic Precipitation Chemistries for Crossflow

International Nuclear Information System (INIS)

Nash, C.A.

2000-01-01

Precipitation chemistries for strontium and transuranic (TRU) removal have been tested for crossflow filterability and lanthanide removal with simulants of Hanford tank 241-AN-107 supernate. This is the initial work indicating the usefulness of a strontium and permanganate precipitation process as applied to the Hanford River Protection Project. Precipitations with both ferric and ferrous iron were shown to be at least two orders of magnitude less filterable than a 0.1 gpm/ft target average flux that was desired at the time. A precipitate from a strontium nitrate strike alone was found to filter easily and to make the desired average flux. Other chemistries tested included precipitant of lanthanum(III), nickel (II), calcium (II), and a redox chemistry using sodium permanganate. Of these chemistries a strontium and permanganate strike including calcium provided the highest filter flux compared to the other chemistries. It showed the most promise in lanthanide removal as well. This work provides a promising direction for further work to achieve both acceptable filterability and decontamination for Envelope C wastes to be treated by the Hanford River Protection Project. The work reported here was originally intended to satisfy needs for crossflow filter testing of a strontium and ferric precipitation method for treating Envelope C using a 241-AN-107 simulant

Spectroscopy and Laser-SNMS on stable and radioactive strontium

Energy Technology Data Exchange (ETDEWEB)

Bosco, Hauke; Walther, Clemens [Institut fuer Radiooekologie und Strahlenschutz, Leibniz Universitaet Hannover (Germany); Franzmann, Michael [Institut fuer Radiooekologie und Strahlenschutz, Leibniz Universitaet Hannover (Germany); Institut fuer Physik, Johannes Gutenberg Universitaet Mainz (Germany); Kron, Tobias; Wendt, Klaus [Institut fuer Physik, Johannes Gutenberg Universitaet Mainz (Germany)

2016-07-01

Nuclear accidents as experienced e.g. in Chernobyl or Fukushima and nuclear weapon tests released considerable activity levels and a variety of medium to long-lived radionuclides into the environment. Strontium-90 appears as a significant share of the fission products in spent nuclear fuel and correspondingly in any possible release. Due to its chemical properties it is subject to long range transport through the environment and can cause considerable dose to man when entering the food chain. Correspondingly, the investigation of speciation and migration channels is of major relevance. A radioanalytical approach is severely hampered by the low beta energy of the strontium-90 decay and the need to separate strontium-90 from the secular equilibrated daughter yttrium-90. Hence, application of a mass spectrometric method without chemical separation of the elements is a promising alternative for low-level investigation of strontium-90. Application of the new Laser-SNMS system at IRS Hannover could well suit those needs. It applies three Ti:Sa lasers for resonant ionization of neutral atoms produced by primary ion sputtering in a SIMS together with a time-of-flight mass analysis which provides high spatial resolution. The analytical measurements are preceded by spectroscopic studies on the level structure of strontium to develop a most efficient ionization scheme.

Investigation of Varied Strontium-Transuranic Precipitation Chemistries for Crossflow

Energy Technology Data Exchange (ETDEWEB)

Nash, C.A.

2000-07-27

Precipitation chemistries for strontium and transuranic (TRU) removal have been tested for crossflow filterability and lanthanide removal with simulants of Hanford tank 241-AN-107 supernate. This is the initial work indicating the usefulness of a strontium and permanganate precipitation process as applied to the Hanford River Protection Project. Precipitations with both ferric and ferrous iron were shown to be at least two orders of magnitude less filterable than a 0.1 gpm/ft target average flux that was desired at the time. A precipitate from a strontium nitrate strike alone was found to filter easily and to make the desired average flux. Other chemistries tested included precipitant of lanthanum(III), nickel (II), calcium (II), and a redox chemistry using sodium permanganate. Of these chemistries a strontium and permanganate strike including calcium provided the highest filter flux compared to the other chemistries. It showed the most promise in lanthanide removal as well. This work provides a promising direction for further work to achieve both acceptable filterability and decontamination for Envelope C wastes to be treated by the Hanford River Protection Project. The work reported here was originally intended to satisfy needs for crossflow filter testing of a strontium and ferric precipitation method for treating Envelope C using a 241-AN-107 simulant.

Strontium-90 in ion-exchange resin used in the Australian FIEFS network

International Nuclear Information System (INIS)

Wise, K.N.

1977-10-01

In order to determine monthly strontium-90 fallout deposited at the eight Australian monitoring stations, account must be taken of the level of strontium-90 contamination of the ion-exchange resin as prepared for use in the FIEFS. This procedure has always been important in monitoring strontium-90 fallout deposit in Australia because the level of strontium-90 contamination of ion-exchange resin, supplied by manufacturers in the Northern Hemisphere, has remained of the same order of magnitude as the monthly fallout deposit in the Southern Hemisphere

Physicochemical Properties and Cellular Responses of Strontium-Doped Gypsum Biomaterials

OpenAIRE

Pouria, Amir; Bandegani, Hadis; Pourbaghi-Masouleh, Milad; Hesaraki, Saeed; Alizadeh, Masoud

2012-01-01

This paper describes some physical, structural, and biological properties of gypsum bioceramics doped with various amounts of strontium ions (0.19–2.23 wt%) and compares these properties with those of a pure gypsum as control. Strontium-doped gypsum (gypsum:Sr) was obtained by mixing calcium sulfate hemihydrate powder and solutions of strontium nitrate followed by washing the specimens with distilled water to remove residual salts. Gypsum was the only phase found in the composition of both pu...

Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing.

Directory of Open Access Journals (Sweden)

Nathan Wales

Full Text Available DNA extracted from ancient plant remains almost always contains a mixture of endogenous (that is, derived from the plant and exogenous (derived from other sources DNA. The exogenous 'contaminant' DNA, chiefly derived from microorganisms, presents significant problems for shotgun sequencing. In some samples, more than 90% of the recovered sequences are exogenous, providing limited data relevant to the sample. However, other samples have far less contamination and subsequently yield much more useful data via shotgun sequencing. Given the investment required for high-throughput sequencing, whenever multiple samples are available, it is most economical to sequence the least contaminated sample. We present an assay based on quantitative real-time PCR which estimates the relative amounts of fungal and bacterial DNA in a sample in comparison to the endogenous plant DNA. Given a collection of contextually-similar ancient plant samples, this low cost assay aids in selecting the best sample for shotgun sequencing.

Strontium isotope geochemistry of soil and playa a deposits near Yucca Mountain, Nevada

International Nuclear Information System (INIS)

Marshall, B.D.; Mahan, S.A.

1994-01-01

The isotopic composition of strontium contained in the carbonate fractions of soils provides an excellent tracer which can be used to test models for their origin. This paper reports data on surface coatings and cements, eolian sediments, playas and alluvial fan soils which help to constrain a model for formation of the extensive calcretes and fault infilling in the Yucca Mountain region. The playas contain carbonate with a wide range of strontium compositions; further work will be required to fully understand their possible contributions to the pedogenic carbonate system. Soils from an alluvial fan to the west of Yucca Mountain show that only small amounts of strontium are derived from weathering of silicate detritus. However, calcretes from a fan draining a carbonate terrane have strontium compositions dominated locally by the limestone strontium component. Although much evidence points to an eolian source for at least some of the strontium in the pedogenic carbonates near Yucca Mountain, an additional component or past variation of strontium composition in the eolian source is required to model the pedogenic carbonate system

Organic composite-mediated surface coating of human acellular bone matrix with strontium.

Science.gov (United States)

Huang, Yi-Zhou; Wang, Jing-Jing; Huang, Yong-Can; Wu, Cheng-Guang; Zhang, Yi; Zhang, Chao-Liang; Bai, Lin; Xie, Hui-Qi; Li, Zhao-Yang; Deng, Li

2018-03-01

Acellular bone matrix (ACBM) provides an osteoconductive scaffold for bone repair, but its osteoinductivity is poor. Strontium (Sr) improves the osteoinductivity of bone implants. In this study, we developed an organic composite-mediated strontium coating strategy for ACBM scaffolds by using the ion chelating ability of carboxymethyl cellulose (CMC) and the surface adhesion ability of dopamine (DOPA). The organic coating composite, termed the CMC-DOPA-Sr composite, was synthesized under a mild condition, and its chemical structure and strontium ion chelating ability were then determined. After surface decoration, the physicochemical properties of the strontium-coated ACBM (ACBM-Sr) scaffolds were characterized, and their biocompatibility and osteoinductivity were determined in vitro and in vivo. The results showed that the CMC-DOPA-Sr composite facilitated strontium coating on the surface of ACBM scaffolds. The ACBM-Sr scaffolds possessed a sustained strontium ion release profile, exhibited good cytocompatibility, and enhanced the osteogenic differentiation of mesenchymal stem cells in vitro. Furthermore, the ACBM-Sr scaffolds showed good histocompatibility after subcutaneous implantation in nude mice. Taken together, this study provided a simple and mild strategy to realize strontium coating for ACBM scaffolds, which resulted in good biocompatibility and improved osteoinductivity. Copyright © 2017 Elsevier B.V. All rights reserved.

Strontium and fluorine in tuatua shells

International Nuclear Information System (INIS)

Trompetter, W.J.; Coote, G.E.

1993-01-01

This report describes the research to date on the elemental distributions of strontium, calcium, and fluorine in a collection of 24 tuatua shells (courtesy of National Museum). Variations in elemental concentrations were measured in the shell cross-sections using a scanning proton microprobe (PIXE and PIGME). In this paper we report the findings to date, and present 2-D measurement scans as illustrative grey-scale pictures. Our results support the hypothesis that increased strontium concentrations are deposited in the shells during spawning, and that fluorine concentration is proportional to growth rate. (author). 15 refs.; 13 figs.; 1 appendix

Dosing of low-activity strontium 90 in human bone ashes - A method based on the quantitative precipitation of strontium nitrate

International Nuclear Information System (INIS)

Patti, Francois; Bullier, Denise

1969-02-01

The specific separation of strontium nitrate in bone ash samples by red fuming nitric acid requires a succession of precipitation varying in number according to the weight of ashes. The interest of the technique is to define the experimental conditions required for a reproducible quantitative separation of strontium. The operating process tested on over 1.500 samples allowed to obtain chemical yields of about 90 per cent. (authors) [fr

Strontium-90 and cesium-137 in freshwater from May 1984

International Nuclear Information System (INIS)

1984-01-01

Strontium-90 and cesium-137 in freshwater measured in May 1984 are given in pCi/l. The sampling point is 1, Kasumigaura-Lake (Ibaraki). Collection and pretreatment of samples, preparation of samples for analysis, separation of strontium-90 and cesium-137, determination of stable strontium, calcium and potassium, and counting are described. The sample was passed through a cation exchange column. After the radiochemical separation, the mounted precipitates were counted for activity using low background beta counters normally for 60 minutes. (Mori, K.)

Bactericidal strontium-releasing injectable bone cements based on bioactive glasses

OpenAIRE

Brauer, Delia S.; Karpukhina, Natalia; Kedia, Gopal; Bhat, Aditya; Law, Robert V.; Radecka, Izabela; Hill, Robert G.

2013-01-01

Strontium-releasing injectable bone cements may have the potential to prevent implant-related infections through the bactericidal action of strontium, while enhancing bone formation in patients suffering from osteoporosis. A melt-derived bioactive glass (BG) series (SiO2–CaO–CaF2–MgO) with 0–50% of calcium substituted with strontium on a molar base were produced. By mixing glass powder, poly(acrylic acid) and water, cements were obtained which can be delivered by injection and set in situ, gi...

Decomposition pathways of polytetrafluoroethylene by co-grinding with strontium/calcium oxides.

Science.gov (United States)

Qu, Jun; He, Xiaoman; Zhang, Qiwu; Liu, Xinzhong; Saito, Fumio

2017-06-01

Waste polytetrafluoroethylene (PTFE) could be easily decomposed by co-grinding with inorganic additive such as strontium oxide (SrO), strontium peroxide (SrO 2 ) and calcium oxide (CaO) by using a planetary ball mill, in which the fluorine was transformed into nontoxic inorganic fluoride salts such as strontium fluoride (SrF 2 ) or calcium fluoride (CaF 2 ). Depending on the kind of additive as well as the added molar ratio, however, the reaction mechanism of the decomposition was found to change, with different compositions of carbon compounds formed. CO gas, the mixture of strontium carbonate (SrCO 3 ) and carbon, only SrCO 3 were obtained as reaction products respectively with equimolar SrO, excess SrO and excess SrO 2 to the monomer unit CF 2 of PTFE were used. Excess amount of CaO was needed to effectively decompose PTFE because of its lower reactivity compared with strontium oxide, but it promised practical applications due to its low cost.

Strontium Diibuprofenate Dihydrate, Strontium Malonate Sesquihydrate, Strontium Diascorbate Dihydrate and Strontium 2-Oxidobenzoate Hydrate at 120 K

DEFF Research Database (Denmark)

Stahl, Kenny; Andersen, Jens Enevold Thaulov; Cristgau, Stephan

2006-01-01

-sharing to form chains. The Sr coordination chains are packed into layers, which are stacked by van der Waals interactions. Poly[-aqua-diaquadi--malonato-distrontium(II)], [Sr2(C3H2O4)2(H2O)3]n, crystallizes with nine-coordinated Sr atoms three-dimensionally interconnected into a framework structure. One...... of the two crystallographically independent water molecules is located on a twofold axial site. catena-Poly[[diaqua(ascorbato)strontium(II)]--ascorbato], [Sr(C6H7O6)2(H2O)2]n, crystallizes with isolated eight-coordinated Sr polyhedra. One of the ascorbate ligands bridges two Sr atoms, forming zigzag...

Measurements of cesium and strontium diffusion in biotite gneiss

International Nuclear Information System (INIS)

Skagius, K.; Neretnieks, I.

1988-01-01

A significant retardation of radionuclides transported by flowing water from an underground repository can be expected if the nuclides are able to diffuse into the water filled micropores in the rock. This diffusion into the pores will also increase the surface available to interactions between the nuclides in the ground water and the rock material, such as sorption. To calculate the retardation, it is necessary to know the sorption properties and the diffusivities in the rock matrix for the radionuclides. Diffusion experiments with cesium and strontium in biotite gneiss samples have been performed. Both the transport of strontium and cesium through rock samples and the concentration profiles of cesium and strontium inside rock samples have been determined. The result shows that diffusion of cesium and strontium occurs in the rock material. A diffusion model has been used to evaluate the diffusivity. Both pore diffusion and surface diffusion had to be included in the model to give good agreement with the experimental data. If surface diffusion is not included in the model, the effective pore diffusivity that gives the best fit to the experimental data is found to be higher than expected from earlier measurement of iodide diffusion in the same type of rock material. This indicates that the diffusion of cesium and strontium (sorbing components) in rock material is caused by both pore diffusion and surface diffusion acting in parallel

Diffusion measurements of cesium and strontium in biotite gneiss

International Nuclear Information System (INIS)

Skagius, K.; Neretnieks, I.

1985-01-01

A significant retardation of radionuclides transported by flowing water from an underground repository can be expected if the nuclides are able to diffuse into the water filled micropores in the rock. This diffusion into the pores will also increase the surface available to interaction between the nuclides in the groundwater and the rock material, such as sorption. To calculate the retardation it is necessary to know the sorption properties and the diffusivities in the rock matrix for the radionuclides. Diffusion experiments with cesium and strontium in biotite gneiss samples have been performed. Both the transport of strontium and cesium through rock samples and the concentration profiles of cesium and strontium inside rock samples have been determined. The result show that diffusion of cesium and strontium occurs in the rock material. A diffusion model has been used to evaluate the diffusivity. Both pore diffusion and surface diffusion had to be included in the model to give good agreement with the experimental data. If surface diffusion is not included in the model, the effective pore diffusivity that gives the best fit to the experimental data is found to be higher than expected from earlier measurements of iodide diffusion in the same type of rock material. This indicates that the diffusion of cesium and strontium (sorbing components) in rock material is caused by both pore diffusion and surface diffusion acting in parallel. (author)

Ancient DNA investigations: A review on their significance in ...

African Journals Online (AJOL)

However, its degradation and post-mortem chemical alteration make difficult its quantification and amplification. Moreover the study of aDNA is challenging due to the contamination by exogenous current DNA. Recently, the progress of molecular techniques and the use of sophisticated approaches greatly improved the ratio ...

Exploring Ancient Skies A Survey of Ancient and Cultural Astronomy

CERN Document Server

Kelley, David H

2011-01-01

Exploring Ancient Skies brings together the methods of archaeology and the insights of modern astronomy to explore the science of astronomy as it was practiced in various cultures prior to the invention of the telescope. The book reviews an enormous and growing body of literature on the cultures of the ancient Mediterranean, the Far East, and the New World (particularly Mesoamerica), putting the ancient astronomical materials into their archaeological and cultural contexts. The authors begin with an overview of the field and proceed to essential aspects of naked-eye astronomy, followed by an examination of specific cultures. The book concludes by taking into account the purposes of ancient astronomy: astrology, navigation, calendar regulation, and (not least) the understanding of our place and role in the universe. Skies are recreated to display critical events as they would have appeared to ancient observers—events such as the supernova of 1054 A.D., the "lion horoscope," and the Star of Bethlehem. Explori...

Ancient pathogen DNA in human teeth and petrous bones

DEFF Research Database (Denmark)

Margaryan, Ashot; Hansen, Henrik B.; Rasmussen, Simon

2018-01-01

pestis. Based on shotgun sequencing data, four of these five plague victims showed clearly detectable levels of Y.pestis DNA in the teeth, whereas all the petrous bones failed to produce Y.pestis DNA above baseline levels. A broader comparative metagenomic analysis of teeth and petrous bones from 10...

Characteristics of strontium-doped ZnO films on love wave filter applications

International Nuclear Information System (INIS)

Water, Walter; Yan, Y.-S.

2007-01-01

The effect of dopant concentrations in strontium-doped ZnO films on Love wave filter characteristics was investigated. Strontium-doped ZnO films with a c-axis preferred orientation were grown on ST-cut quartz by radio frequency magnetron sputtering. The crystalline structures and surface morphology of films were studied by X-ray diffraction, scanning electron microscopy and atomic force microscopy. The electromechanical coupling coefficient, dielectric constant, and temperature coefficient of frequency of filters were then determined using a network analyzer. A uniform crystalline structure and smooth surface of the ZnO films were obtained at the 1-2 mol% strontium dopant level. The electromechanical coupling coefficient of the 1 mol% strontium-doped ZnO film reaches a maximum of 0.61%, and the temperature coefficient of frequency declines to + 12.87 ppm/deg. C at a 1.5 mol% strontium dopant level

Temporal Fluctuation in North East Baltic Sea Region Cattle Population Revealed by Mitochondrial and Y-Chromosomal DNA Analyses

Science.gov (United States)

Niemi, Marianna; Bläuer, Auli; Iso-Touru, Terhi; Harjula, Janne; Nyström Edmark, Veronica; Rannamäe, Eve; Lõugas, Lembi; Sajantila, Antti; Lidén, Kerstin; Taavitsainen, Jussi-Pekka

2015-01-01

Background Ancient DNA analysis offers a way to detect changes in populations over time. To date, most studies of ancient cattle have focused on their domestication in prehistory, while only a limited number of studies have analysed later periods. Conversely, the genetic structure of modern cattle populations is well known given the undertaking of several molecular and population genetic studies. Results Bones and teeth from ancient cattle populations from the North-East Baltic Sea region dated to the Prehistoric (Late Bronze and Iron Age, 5 samples), Medieval (14), and Post-Medieval (26) periods were investigated by sequencing 667 base pairs (bp) from the mitochondrial DNA (mtDNA) and 155 bp of intron 19 in the Y-chromosomal UTY gene. Comparison of maternal (mtDNA haplotypes) genetic diversity in ancient cattle (45 samples) with modern cattle populations in Europe and Asia (2094 samples) revealed 30 ancient mtDNA haplotypes, 24 of which were shared with modern breeds, while 6 were unique to the ancient samples. Of seven Y-chromosomal sequences determined from ancient samples, six were Y2 and one Y1 haplotype. Combined data including Swedish samples from the same periods (64 samples) was compared with the occurrence of Y-chromosomal haplotypes in modern cattle (1614 samples). Conclusions The diversity of haplogroups was highest in the Prehistoric samples, where many haplotypes were unique. The Medieval and Post-Medieval samples also show a high diversity with new haplotypes. Some of these haplotypes have become frequent in modern breeds in the Nordic Countries and North-Western Russia while other haplotypes have remained in only a few local breeds or seem to have been lost. A temporal shift in Y-chromosomal haplotypes from Y2 to Y1 was detected that corresponds with the appearance of new mtDNA haplotypes in the Medieval and Post-Medieval period. This suggests a replacement of the Prehistoric mtDNA and Y chromosomal haplotypes by new types of cattle. PMID:25992976

Thermal reactions of some calcium, strontium, and barium chromates

International Nuclear Information System (INIS)

Piekarska-Piesse, B.; Gontarz, Z.; Ostrowski, A.; Kucharski, R.

2000-01-01

Thermal decomposition of calcium chromates and solid state reactions of barium and strontium chromates(VI) with barium and strontium hydroxides and carbonates, as well as the reduction of chromates by carbon and hydrogen, have been investigated. The mechanisms of individual stages of the thermal decomposition have been proposed on the basis of morphological classification. (author)

Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens.

Science.gov (United States)

Weiß, Clemens L; Schuenemann, Verena J; Devos, Jane; Shirsekar, Gautam; Reiter, Ella; Gould, Billie A; Stinchcombe, John R; Krause, Johannes; Burbano, Hernán A

2016-06-01

Herbaria archive a record of changes of worldwide plant biodiversity harbouring millions of specimens that contain DNA suitable for genome sequencing. To profit from this resource, it is fundamental to understand in detail the process of DNA degradation in herbarium specimens. We investigated patterns of DNA fragmentation and nucleotide misincorporation by analysing 86 herbarium samples spanning the last 300 years using Illumina shotgun sequencing. We found an exponential decay relationship between DNA fragmentation and time, and estimated a per nucleotide fragmentation rate of 1.66 × 10(-4) per year, which is six times faster than the rate estimated for ancient bones. Additionally, we found that strand breaks occur specially before purines, and that depurination-driven DNA breakage occurs constantly through time and can to a great extent explain decreasing fragment length over time. Similar to what has been found analysing ancient DNA from bones, we found a strong correlation between the deamination-driven accumulation of cytosine to thymine substitutions and time, which reinforces the importance of substitution patterns to authenticate the ancient/historical nature of DNA fragments. Accurate estimations of DNA degradation through time will allow informed decisions about laboratory and computational procedures to take advantage of the vast collection of worldwide herbarium specimens.

Characterising the potential of sheep wool for ancient DNA analyses

DEFF Research Database (Denmark)

Brandt, Luise Ørsted; Tranekjer, Lena D.; Mannering, Ulla

2011-01-01

can be PCR-amplified from wool derived from a variety of breeds, regardless of the body location or natural pigmentation. Furthermore, although DNA can be PCR-amplified from wool dyed with one of four common plant dyes (tansy, woad, madder, weld), the use of mordants such as alum or iron leads...... and content of DNA in hair shafts are known to vary, and it is possible that common treatments of wool such as dyeing may negatively impact the DNA. Using quantitative real-time polymerase chain reaction (PCR), we demonstrate that in general, short fragments of both mitochondrial and single-copy nuclear DNA...

Strontium-90 - ED 4309

International Nuclear Information System (INIS)

Ammerich, M.; Frot, P.; Gambini, D.; Gauron, C.; Moureaux, P.; Herbelet, G.; Lahaye, T.; Le Guen, B.; Pihet, P.; Rannou, A.; Vidal, E.

2012-12-01

This sheet presents the characteristics of strontium-90, its origin, and its radio-physical and biological properties. It briefly describes its use in nuclear medicine. It indicates its dosimetric parameters for external exposure, cutaneous contamination, and internal exposure due to acute contamination or to chronic contamination. It indicates and comments the various exposure control techniques: ambient dose rate measurement, surface contamination measurement, atmosphere contamination. It addresses the means of protection: premise design, protection against external exposure and against internal exposure. It describes how areas are delimited and controlled within the premises: regulatory areas, controls to be performed. It addresses the personnel classification, training and medical survey. It addresses the issue of wastes and effluents. It briefly recalls the administrative procedures related to the authorization and declaration of possession and use of sealed and unsealed sources. It indicates regulatory aspects related to the transport of strontium-90, describes what is to be done in case of incident or accident (for the different types of contamination or exposure)

Prediction of autosomal STR typing success in ancient and Second World War bone samples.

Science.gov (United States)

Zupanič Pajnič, Irena; Zupanc, Tomaž; Balažic, Jože; Geršak, Živa Miriam; Stojković, Oliver; Skadrić, Ivan; Črešnar, Matija

2017-03-01

Human-specific quantitative PCR (qPCR) has been developed for forensic use in the last 10 years and is the preferred DNA quantification technique since it is very accurate, sensitive, objective, time-effective and automatable. The amount of information that can be gleaned from a single quantification reaction using commercially available quantification kits has increased from the quantity of nuclear DNA to the amount of male DNA, presence of inhibitors and, most recently, to the degree of DNA degradation. In skeletal remains samples from disaster victims, missing persons and war conflict victims, the DNA is usually degraded. Therefore the new commercial qPCR kits able to assess the degree of degradation are potentially able to predict the success of downstream short tandem repeat (STR) typing. The goal of this study was to verify the quantification step using the PowerQuant kit with regard to its suitability as a screening method for autosomal STR typing success on ancient and Second World War (WWII) skeletal remains. We analysed 60 skeletons excavated from five archaeological sites and four WWII mass graves from Slovenia. The bones were cleaned, surface contamination was removed and the bones ground to a powder. Genomic DNA was obtained from 0.5g of bone powder after total demineralization. The DNA was purified using a Biorobot EZ1 device. Following PowerQuant quantification, DNA samples were subjected to autosomal STR amplification using the NGM kit. Up to 2.51ng DNA/g of powder were extracted. No inhibition was detected in any of bones analysed. 82% of the WWII bones gave full profiles while 73% of the ancient bones gave profiles not suitable for interpretation. Four bone extracts yielded no detectable amplification or zero quantification results and no profiles were obtained from any of them. Full or useful partial profiles were produced only from bone extracts where short autosomal (Auto) and long degradation (Deg) PowerQuant targets were detected. It is

Strontium effects on root dentin tubule occlusion and nanomechanical properties.

Science.gov (United States)

Saeki, Kuniko; Marshall, Grayson W; Gansky, Stuart A; Parkinson, Charles R; Marshall, Sally J

2016-02-01

Dentin hypersensitivity often is treated by promotion of dentin tubule occlusion. In this in vitro study we evaluated nanomechanical properties and degree of tubule occlusion conferred to sound and demineralized human root dentin following treatment with a 10% (w/w) strontium acetate solution and its relation to the treatment duration and delivery method. 24 human cervical root dentin disks (8 groups of 3) were polished through 0.25 μm. 12 disks were subjected to an acid challenge (1% citric acid, pH 3.8) for 2 min. The specimens were incubated in artificial saliva, treated by soaking or brushing with deionized (DI) water or a solution of 10% strontium acetate for 2 min twice a day for 28 days. The occlusion percent and nanomechanical properties were determined at the baseline, 5, 14 and 28 days. Cross-sectioned specimens were prepared to evaluate the depth affected by strontium acetate / dentin interaction by SEM. Statistical analysis was performed using linear mixed effects models. A 10% strontium acetate treatment over 5-28 days significantly increased tubule occlusion for normal root dentin and to a lesser extent for demineralized dentin and increased the AFM based nanomechanical properties of demineralized dentin. Brushing was more effective than soaking in recovery of properties of demineralized dentin when treated with strontium. No difference in tubuleocclusion was found between the two delivery methods. Strontium acetate itself proved to have the ability to occlude dentin tubules and result in small changes in the mechanical properties of dentin. Copyright © 2015 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

Ancient genomics in India: Clarifying the maternal origins of 160-year-old human remains

Directory of Open Access Journals (Sweden)

Esha Bandyopadhyay

2017-10-01

Full Text Available Sequencing DNA from archaeological remains has opened up new possibilities for furthering our understanding of the origins and evolutionary history of modern humans [1]. However, most ancient DNA (aDNA studies, thus far, have focused on ancient samples obtained from permafrozen and temperate regions, where preservation conditions are better suited for long-term DNA survival. Consequently, this has left a void in aDNA research in tropical regions such as South Asia. The primary aims of the present study were to (a test the feasibility of extracting DNA from historical samples (~160 years old from northern India, and (b correlate obtained mitochondrial DNA (mtDNA signatures with geographical origins of the individuals, as reported in historical records. A total of 30 molars were subjected to DNA extractions and Illumina indexed library preparation. All laboratory work was performed following strict aDNA standards in the clean laboratory at the Centre for Cellular and Molecular Biology, Hyderabad. Complete mtDNA genomes were targeted from all 30 samples following the DNA hybridization method outlined in Maricic et al., 2010 [2]. Captured libraries were sequenced on the Illumina HiSeq 2500 platform (100 bp paired-end mode at MedGenome Inc., Bangalore. Obtained sequences were trimmed for residual adapters using AdapterRemoval and mapped to the revised Cambridge Reference Sequence (rCRS using BWA. HaploGrep2 [3] was used to assign mtDNA haplogroups to each sample. We successfully obtained endogenous mtDNA sequences from all 30 samples, as confirmed by typical aDNA damage (cytosine deamination on the ends of DNA molecules. Coverage and depth of sequencing were in the range of 91-99.5% and 6X-371X, respectively. To ascertain the maternal origins of the individuals, mtDNA haplogroups of our samples were compared to a database compiled from published mtDNA sequences from modern South Asian individuals. Based on this, we were able to confirm northern

Induction of a program gene expression during osteoblast differentiation with strontium ranelate

International Nuclear Information System (INIS)

Zhu Lingling; Zaidi, Samir; Peng Yuanzhen; Zhou Hang; Moonga, Baljit S.; Blesius, Alexia; Dupin-Roger, Isabelle; Zaidi, Mone; Sun Li

2007-01-01

Strontium ranelate, a new agent for the treatment of osteoporosis, has been shown stimulate bone formation in various experimental models. This study examines the effect of strontium ranelate on gene expression in osteoblasts, as well as the formation of mineralized (von Kossa-positive) colony-forming unit-osteoblasts (CFU-obs). Bone marrow-derived stromal cells cultured for 21 days under differentiating conditions, when exposed to strontium ranelate, displayed a significant time- and concentration-dependent increase in the expression of the master gene, Runx2, as well as bone sialoprotein (BSP), but interestingly without effects on osteocalcin. This was associated with a significant increase in the formation of CFU-obs at day 21 of culture. In U-33 pre-osteoblastic cells, strontium ranelate significantly enhanced the expression of Runx2 and osteocalcin, but not BSP. Late, more mature osteoblastic OB-6 cells showed significant elevations in BSP and osteocalcin, but with only minimal effects on Runx2. In conclusion, strontium ranelate stimulates osteoblast differentiation, but the induction of the program of gene expression appears to be cell type-specific. The increased osteoblastic differentiation is the likely basis underlying the therapeutic bone-forming actions of strontium ranelate

Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Science.gov (United States)

Ziesemer, Kirsten A; Mann, Allison E; Sankaranarayanan, Krithivasan; Schroeder, Hannes; Ozga, Andrew T; Brandt, Bernd W; Zaura, Egija; Waters-Rist, Andrea; Hoogland, Menno; Salazar-García, Domingo C; Aldenderfer, Mark; Speller, Camilla; Hendy, Jessica; Weston, Darlene A; MacDonald, Sandy J; Thomas, Gavin H; Collins, Matthew J; Lewis, Cecil M; Hofman, Corinne; Warinner, Christina

2015-11-13

To date, characterization of ancient oral (dental calculus) and gut (coprolite) microbiota has been primarily accomplished through a metataxonomic approach involving targeted amplification of one or more variable regions in the 16S rRNA gene. Specifically, the V3 region (E. coli 341-534) of this gene has been suggested as an excellent candidate for ancient DNA amplification and microbial community reconstruction. However, in practice this metataxonomic approach often produces highly skewed taxonomic frequency data. In this study, we use non-targeted (shotgun metagenomics) sequencing methods to better understand skewed microbial profiles observed in four ancient dental calculus specimens previously analyzed by amplicon sequencing. Through comparisons of microbial taxonomic counts from paired amplicon (V3 U341F/534R) and shotgun sequencing datasets, we demonstrate that extensive length polymorphisms in the V3 region are a consistent and major cause of differential amplification leading to taxonomic bias in ancient microbiome reconstructions based on amplicon sequencing. We conclude that systematic amplification bias confounds attempts to accurately reconstruct microbiome taxonomic profiles from 16S rRNA V3 amplicon data generated using universal primers. Because in silico analysis indicates that alternative 16S rRNA hypervariable regions will present similar challenges, we advocate for the use of a shotgun metagenomics approach in ancient microbiome reconstructions.

Crystallization of carbonate hydroxyapatite in the presence of strontium ranelate

Science.gov (United States)

Izmailov, R. R.; Golovanova, O. A.

2015-11-01

The influence of strontium ranelate on the crystallization of carbonate hydroxyapatite from a prototype of synovial fluid of humans has been investigated. The synthesis products are studied by IR Fourier spectroscopy, X-ray diffraction, and differential thermal analysis. The amount of strontium in the samples is determined by atomic emission analysis. The sizes of crystallites in the synthesized phases are calculated from the Selyakov-Scherrer formula; the lattice parameters are also determined. The phases obtained are found to be species of calcium-deficient strontium-containing carbonate hydroxyapatite of mixed A and B types. Schemes of chemical reactions occurring during heat treatment are proposed.

Ancient fossil specimens of extinct species are genetically more distant to an outgroup than extant sister species are

Science.gov (United States)

Huang, Shi

2009-01-01

There exists a remarkable correlation between genetic distance as measured by protein or DNA dissimilarity and time of species divergence as inferred from fossil records. This observation has provoked the molecular clock hypothesis. However, data inconsistent with the hypothesis have steadily accumulated in recent years from studies of extant organisms. Here the published DNA and protein sequences from ancient fossil specimens were examined to see if they would support the molecular clock hypothesis. The hypothesis predicts that ancient specimens cannot be genetically more distant to an outgroup than extant sister species are. Also, two distinct ancient specimens cannot be genetically more distant than their extant sister species are. The findings here do not conform to these predictions. Neanderthals are more distant to chimpanzees and gorillas than modern humans are. Dinosaurs are more distant to frogs than extant birds are. Mastodons are more distant to opossums than other placental mammals are. The genetic distance between dinosaurs and mastodons is greater than that between extant birds and mammals. Therefore, while the molecular clock hypothesis is consistent with some data from extant organisms, it has yet to find support from ancient fossils. Far more damaging to the hypothesis than data from extant organisms, which merely question the constancy of mutation rate, the study of ancient fossil organisms here challenges for the first time the fundamental premise of modern evolution theory that genetic distances had always increased with time in the past history of life on Earth. PMID:18600632

Simplified method for the determination of strontium-90 in large amounts of bone-ash; Methode simplifiee de dosage du strontium 90 sur des quantites importantes de cendres d'os

Energy Technology Data Exchange (ETDEWEB)

Patti, F; Jeanmaire, L [Commissariat a l' Energie Atomique, Fontenay-aux-roses (France). Centre d' Etudes Nucleaires

1966-06-01

The principle of the determination is based on a 3-step process: 1) concentrating the strontium by attacking the ash with nitric acid; 2) elimination of residual phosphoric ions by a double precipitation of strontium oxalate; and 3) extraction of yttrium 90, counted in the oxalate form. The advantages of the method: -) using simple techniques it makes it possible to process 50 g of ash; -) the initial concentration of strontium considerably reduces the volume of the solutions as well as the size of precipitates handled. Fuming nitric acid is used in a specially designed burette. (authors) [French] Le principe du dosage repos sur un procede en 3 etapes: 1) Concentration du strontium par une attaque nitrique des cendres; 2) Elimination des ions phosphoriques restants par une double precipitation de l'oxalate de strontium. 3) Extraction de l'yttrium 90, compte sous forme d'oxalate. Interet de la methode: dans des conditions techniques simples, elle permet le traitement de 50 g de cendres d'os; la concentration initiale du strontium reduit notablement le volume des solutions ainsi que l'importance des precipites manipules. L'acide nitrique fumant est utilise par l'intermediaire d'une burette specialement concue a cet effet.

Strontium-doped calcium silicate bioceramic with enhanced in vitro osteogenic properties.

Science.gov (United States)

No, Young Jung; Roohaniesfahani, Seyediman; Lu, Zufu; Shi, Jeffrey; Zreiqat, Hala

2017-06-05

Gehlenite (GLN, Ca 2 SiAl 2 O 7 ) is a bioceramic that has been recently shown to possess excellent mechanical strength and in vitro osteogenic properties for bone regeneration. Substitutional incorporation of strontium in place of calcium is an effective way to further enhance biological properties of calcium-based bioceramics and glasses. However, such strategy has the potential to affect other important physicochemical parameters such as strength and degradation due to differences in the ionic radius of strontium and calcium. This study is the first to investigate the effect of a range of concentrations of strontium substitution of calcium at 1, 2, 5, 10 mol% (S1-GLN, S2-GLN, S5-GLN and S10-GLN) on the physicochemical and biological properties of GLN. We showed that up to 2 mol% strontium ion substitution retains the monophasic GLN structure when sintered at 1450 °C, whereas higher concentrations resulted in presence of calcium silicate impurities. Increased strontium incorporation resulted in changes in grain morphology and reduced densification when the ceramics were sintered at 1450 °C. Porous GLN, S1-GLN and S2-GLN scaffolds (∼80% porosity) showed compressive strengths of 2.05 ± 0.46 MPa, 1.76 ± 0.79 MPa and 1.57 ± 0.52 MPa respectively. S1-GLN and S2-GLN immersed in simulated body fluid showed increased strontium ion release but reduced calcium and silicon ion release compared to GLN without affecting overall weight loss and pH over a 21 d period. The bioactivity of the S2-GLN ceramics was significantly improved as reflected in the significant upregulation of HOB proliferation and differentiation compared to GLN. Overall, these results suggest that increased incorporation of strontium presents a trade-off between bioactivity and mechanical strength for GLN bioceramics. This is an important consideration in the development of strontium-doped bioceramics.

Preparation of strontium hexaferrite magnets from celestite and blue dust by mechanochemical route

Directory of Open Access Journals (Sweden)

Tiwary R.K.

2008-01-01

Full Text Available In the present investigation celestite (natural ore of strontium and blue dust (iron ore fines have been used for the preparation of strontium hexaferrite powder. The mechanical alloying process has been adopted to prepare strontium hexaferrite powder. The celestite after chemical upradation and physically upgraded blue dust alongwith sodium carbonate was taken for the preparation of strontium hexaferrite in this experiment. The high-energy planetary ball mill with tungsten carbide jar and ball was used to prepare strontium hexaferrite powder. A long time of ball milling for different duration has led to displacement solid-state reaction. At the end of each experiment the product was washed thoroughly and dried. The X-ray diffaction study after annealing shows the development of single-phase strontium hexaferrite after 40 hrs. of milling. The resultant powder was compacted under magnetic field and sintered to prepare the magnet after annealing the ferrite powder. The magnetic properties were measured by Pulse magneto meter. The moderate value of coercivity, remanence and energy product were observed in this sintered magnet. The work illustrates the feasibility to prepare strontium hexaferrite magnetic powders directly from natural ores which can reduce the total cost of production as compared to conventional method.

Study of strontium and cesium migration in fractured crystalline rock

International Nuclear Information System (INIS)

Gustafsson, E.; Klockars, C.E.

1984-01-01

The purpose of this investigation has been to study the retardation and dilution of non-active strontium and cesium relative to a non-absorbing substance (iodide) in a well-defined fracture zone in the Finnsjoen field research area. The investigation was carried out in a previously tracer-tested fracture zone. The study has encompassed two separate test runs with prolonged injection of strontium and iodide and of cesium and iodide. The test have shown that: - Strontium is not retarded, but rather absorbed to about 40% at equilibrium. - At injection stop, 36.3% of the injected mass of strontium has been absorbed and there is no deabsorption. -Cesium is retarded a factor of 2-3 and absorbed to about 30% at equilibrium. - At injection stop, 39.4% of the injected mass of cesium has been absorbed. Cesium is deabsorbed after injection stop (400h) and after 1300 hours, only 22% of the injected mass of cesium is absorbed. (author)

Atomization of magnesium, strontium, barium and lead nitrates on surface of graphite atomizers

International Nuclear Information System (INIS)

Nagdaev, V.K.; Pupyshev, A.A.

1982-01-01

Modelling of the processes on graphite surface using differential-thermal analysis and graphite core with identification of decomposition products of magnesium, strontium, barium and lead nitrates by X-ray analysis has shown that carbon promotes the formation of strontium, barium and lead carbonates. The obtained temperatures of strontium and barium carbonate decomposition to oxides agree satisfactorily with calculation ones. Magnesium nitrate does not react with carbon. Formation of strontium and barium carbonates results in considerable slowing down of the process of gaseous oxide dissociation. Lead carbonate is unstable and rapidly decomposes to oxide with subsequent reduction to free metal. Formation of magnesium, strontium and barium free atoms is connected with appearance of gaseous oxides in analytical zone. Oxide and free metal lead are present on graphite surface simultaneously

Redistribution of strontium and cesium during alteration of smectite to illite

International Nuclear Information System (INIS)

Ohnuki, Toshihiko; Murakami, Takashi; Sato, Tsutomu; Isobe, Hiroshi

1994-01-01

The redistribution of strontium and cesium during the alteration of smectite to illite has been studied under hydrothermal conditions at 200 C using solutions of 1x10 -4 M Sr and Cs. Two different sorption conditions were applied for the hydrothermal experiments. One was the condition in which strontium and cesium were sorbed by smectite before the hydrothermal experiments (dynamic condition). The other was the condition in which strontium and cesium were sorbed by the alteration products, illite/smectite (I/S) interstratified minerals after the hydrothermal experiments (static condition). The sorption characteristics of strontium and cesium by smectite, I/S interstratified minerals were examined by a sequential extraction method. Most of the strontium was desorbed from smectite and the I/S interstratified minerals with a 1 M KCl solution under both the dynamic and static conditions. Less than 1% of cesium was desorbed from the I/S interstratified minerals with any solution of a 1 M KCl, a 1 M HCl and a 6 M HCl under the dynamic condition, while most of cesium was desorbed with either solution of a 1 M KCl and 1 M HCl from smectite and from the I/S interstratified minerals under the static condition. These suggest that cesium sorbed by smectite changes its sorption characteristic during the alteration process, but strontium does not. Possible sites for more strongly bounded cesium to the I/S interstratified minerals may be at the 'ditrigonal cavity' of adjacent tetrahedral layers. (orig.)

Baseline concentrations of strontium and 90Sr in seawater from the northern Gulf

International Nuclear Information System (INIS)

Uddin, S.; Al Ghadban, A.N.; Behbahani, M.

2013-01-01

Highlights: • This is the first baseline for strontium and 90 Sr from northern Gulf. • The total strontium concentration is much higher than reported for other oceans. • The Sr/salinity ratio correlates well with global averages. • High Sr might be due to increased salinity/CaCo 3 dissolution in acidifying Gulf waters. -- Abstract: Baseline concentration of strontium and Sr-90 in Gulf is presented. The strontium concentration is much higher than reported for other oceanic waters, while the Sr-90 concentration is low at 0.7–1.0 mBq l −1 , that represents the background level following nuclear tests and can be used as an effective tracer in case of any radioactive release in the region. The strontium concentration is primarily related to the increasing salinity off the Gulf coast

Isotope ratios of strontium and neodymium for characterizing earth mantle materials

International Nuclear Information System (INIS)

Brandt, S.B.; Lepin, V.S.; Maslovskaja, M.N.

1985-01-01

It is shown that the shares of mantle, crustal and sedimentary materials in rocks and ore deposits can be determined by isotope methods. Using Yakutian kimberlites as an example, mixing processes of mantle and crustal materials are illustrated with the aid of strontium isotopes. Due to the high sensitivity of strontium to hydrothermal effects, the combined use of neodymium and strontium isotopes is considered more appropriate to solve the problem of determining the share of mantle materials. This is demonstrated for rare earth minerals and alkaline rocks of Eastern Siberia and Mongolia. (author)

Biosorption of the strontium ion by irradiated Saccharomyces cerevisiae under culture conditions.

Science.gov (United States)

Qiu, Liang; Feng, Jundong; Dai, Yaodong; Chang, Shuquan

2017-06-01

As a new-emerging method for strontium disposal, biosorption has shown advantages such as high sorption capacity; low cost. In this study, we investigated the potential of Saccharomyces cerevisiae (S. cerevisiae) in strontium disposal under culture conditions and the effects of irradiation on their biosorption capabilities. We found that S. cerevisiae can survive irradiation and grow. Pre-exposure to irradiation rendered S. cerevisiae resistant to further irradiation. Surprisingly, the pre-exposure to irradiation can increase the biosorption capability of S. cerevisiae. We further investigated the factors that influenced the biosorption efficiency, which were (strongest to weakest): pH > strontium concentration > time > temperature. In our orthogonal experiment, the optimal conditions for strontium biosorption by irradiated S. cerevisiae were: pH 7, 150 mg L -1 strontium at the temperature of 32 °C with 30 h. The equilibrium of strontium biosorption was analyzed by Langmuir and Freundlich models, from which the formal model is found to provide a better fit for the experimental results. The kinetics of strontium biosorption by living irradiated S. cerevisiae was found to be comprised of three phases: dramatically increased during 0-9 h, decreased during 12-24 h, and increased during 30-50 h. These results provide a systematic understanding of the biosorption capabilities of irradiated S. cerevisiae, which can contribute to the development of remediating nuclear waste water. Copyright © 2017 Elsevier Ltd. All rights reserved.

Accumulation of strontium 90 and cesium 137 in some hydrobionts

International Nuclear Information System (INIS)

Boyadzhiev, A.; Keslev, D.; Kerteva, A.; Novakova, E.

1974-01-01

Factors responsible for the accumulation of strontium 90 and cesium 137 in some plant organisms, characteristic for fishes in Bulgarian fresh-water reservoirs and in Black Seawater, were examined. The investigated samples were taken during spring, summer and autumn-winter seasons 1967/1968. Each sample burnt to ashes at 450 0 C was examined for strontium 90 and cesium 137 content as well as stable isotopes of calcuim and potassium. Accumulation factors for strontium 90 and cesium 137 were significantly higher in freshwater hydrobionts than in seawater hydrobionts. This could be explained by variations in the concentration of stable isotopes of calcium and potassium from freshwater reservoirs and from seawater. Potassium and calcium concentrations were relatively constant in seawater while in freshwater they were significantly variable. Accumulation factors for these radionuclides increased according to the amount of rain and the altitude above sea level. Strontium 90 was deposited mostly in fins, less in scales and least in the meat of fishes; cesium 137 was mainly deposited in the meat and less in the other parts of fishes. The highest accumulation factors for strontium 90 were determined in fishes and for cesium 137 in plant organisms. The most convenient plant and fish species for tracing radioactive contamination of freshwater reservoirs and in the Black Sea were indicated. (A.B.)

Printed Barium Strontium Titanate capacitors on silicon

Energy Technology Data Exchange (ETDEWEB)

Sette, Daniele [Univ. Grenoble Alpes, F-38000 Grenoble (France); CEA, LETI, MINATEC Campus, F-38054 Grenoble (France); Luxembourg Institute of Science and Technology LIST, Materials Research and Technology Department, L-4422 Belvaux (Luxembourg); Kovacova, Veronika [Univ. Grenoble Alpes, F-38000 Grenoble (France); CEA, LETI, MINATEC Campus, F-38054 Grenoble (France); Defay, Emmanuel, E-mail: emmanuel.defay@list.lu [Univ. Grenoble Alpes, F-38000 Grenoble (France); CEA, LETI, MINATEC Campus, F-38054 Grenoble (France); Luxembourg Institute of Science and Technology LIST, Materials Research and Technology Department, L-4422 Belvaux (Luxembourg)

2015-08-31

In this paper, we show that Barium Strontium Titanate (BST) films can be prepared by inkjet printing of sol–gel precursors on platinized silicon substrate. Moreover, a functional variable capacitor working in the GHz range has been made without any lithography or etching steps. Finally, this technology requires 40 times less precursors than the standard sol–gel spin-coating technique. - Highlights: • Inkjet printing of Barium Strontium Titanate films • Deposition on silicon substrate • Inkjet printed silver top electrode • First ever BST films thinner than 1 μm RF functional variable capacitor that has required no lithography.

Dissolved strontium and calcium levels in the tropical Indian Ocean

Science.gov (United States)

Steiner, Zvi; Sarkar, Amit; Turchyn, Alexandra

2017-04-01

Measurements of seawater alkalinity and dissolved calcium concentrations along oceanic transects are often used to calculate calcium carbonate precipitation and dissolution rates. Given that the distribution coefficient of strontium in CaCO3 varies greatly between different groups of organisms, adding precise measurements of dissolved strontium concentrations provides opportunities to also track relative contributions of these different groups to the regional CaCO3 cycle. However, there are several obstacles to this approach. These obstacles include unresolved systematic discrepancies between seawater calcium and alkalinity data, very large analytical noise around the calcium concentration measurements and the unconstrained role of acantharia (radiolarian precipitating SrSO4 skeletons) in the marine strontium cycle. During the first cruise of the second International Indian Ocean Expedition (IIOE-2) water samples were collected along 67°E from 9°N to 5°S to explore the dissolution rate of calcium carbonate in the water. The dissolution rate can be calculated by combining measurements of water column potential alkalinity with calcium and strontium concentrations measured by ICP-OES and calcium concentration measurements using isotope dilution thermal ionization mass spectrometry (ID-TIMS). CaCO3 mineral saturation state calculated using pH and total alkalinity suggests that along 67°E, the aragonite saturation horizon lays at depth of 500 m on both sides of the equator. Across the cruise transect, dissolved strontium concentrations increase by 2-3% along the thermocline suggesting rapid recycling of strontium rich phases. This is particularly evident just below the thermocline at 8-9°N and below 1000 m water depth, south of the equator. The deep, southern enrichment in strontium does not involve a change in the Sr/Ca ratio, suggesting that this strontium enrichment is related to CaCO3 dissolution. In contrast, in the intermediate waters of the northern part of

Determination of the exchange capacity of soils using radio-strontium; Determination de la capacite d'echange des sols au moyen du radio-strontium

Energy Technology Data Exchange (ETDEWEB)

Grauby, A; Saas, A [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

1964-07-01

In order to improve the technique and in particular to reduce the time required for measuring the exchange capacity of soils, the authors have developed a rapid measurement method based on the use of radio-active tracers. The element chosen for showing the occurrence of exchangeable bases is radio-strontium; it can displace the ions Ca{sup ++}, Mg{sup ++}, Na{sup ++}, K{sup +} from the soil. The use of a de-sorbent, barium chloride, makes it possible to recover the strontium fixed. A comparison of the results obtained using the two methods appears to be very satisfactory. The conventional method requires from 1 1/2 to 2 days - the radio-strontium method requires only 3 hours with the possibility also of carrying out large series of measurements. (authors) [French] Pour ameliorer la technique et surtout reduire le temps de manipulation que necessite la mesure de la capacite d'echange des sols, les auteurs ont mis au point une methode de mesure rapide qui fait appel aux traceurs radioactifs. C'est le radio-strontium qui a ete choisi pour la mise en evidence des bases echangeables. Il permet de deplacer les ions Ca{sup ++}, Mg{sup ++}, Na{sup ++}, K{sup +} du sol. Un desorbant, le chlorure de baryum, permet de recuperer la quantite du strontium fixe. La comparaison des resultats obtenus par les deux methodes semble tres satisfaisante. La methode classique necessite 1 jour et demi a 2 jours - la methode radiostrontium exige seulement 3 heures avec la possibilite de grandes series. (auteurs)

Ancient Genomics and the Peopling of the Southwest Pacific

Science.gov (United States)

Skoglund, Pontus; Posth, Cosimo; Sirak, Kendra; Spriggs, Matthew; Valentin, Frederique; Bedford, Stuart; Clark, Geoffrey; Reepmeyer, Christian; Petchey, Fiona; Fernandes, Daniel; Fu, Qiaomei; Harney, Eadaoin; Lipson, Mark; Mallick, Swapan; Novak, Mario; Rohland, Nadin; Stewardson, Kristin; Abdullah, Syafiq; Cox, Murray P.; Friedlaender, Françoise R.; Friedlaender, Jonathan S.; Kivisild, Toomas; Koki, George; Kusuma, Pradiptajati; Merriwether, D. Andrew; Ricaut, Francois-X.; Wee, Joseph T. S.; Patterson, Nick; Krause, Johannes; Pinhasi, Ron; Reich, David

2017-01-01

The appearance of people associated with the Lapita culture in the South Pacific ~3,000 years ago1 marked the beginning of the last major human dispersal to unpopulated lands. However, the relationship of these pioneers to the long established Papuans of the New Guinea region is unclear. We report genome-wide ancient DNA data from four individuals from Vanuatu (~3100-2700 years before present) and Tonga (~2700-2300 years before present), and co-analyze them with 778 present-day East Asians and Oceanians. Today, indigenous peoples of the South Pacific harbor a mixture of ancestry from Papuans and a population of East Asian origin that does not exist in unmixed form today, but is a match to the ancient individuals. Most analyses have interpreted the minimum of twenty-five percent Papuan ancestry in the region today as evidence that the first humans to reach Remote Oceania, including Polynesia, were derived from population mixtures near New Guinea, prior to the further expansion into Remote Oceania2–5. However, our finding that the ancient individuals had little to no Papuan ancestry implies later human population movements that spread Papuan ancestry through the South Pacific after the islands’ first peopling. PMID:27698418

Detection of 400-year-old Yersinia pestis DNA in human dental pulp: An approach to the diagnosis of ancient septicemia

OpenAIRE

Drancourt, Michel; Aboudharam, Gérard; Signoli, Michel; Dutour, Olivier; Raoult, Didier

1998-01-01

Ancient septicemic plague epidemics were reported to have killed millions of people for 2 millenniums. However, confident diagnosis of ancient septicemia solely on the basis of historical clinical observations is not possible. The lack of suitable infected material has prevented direct demonstration of ancient septicemia; thus, the history of most infections such as plague remains hypothetical. The durability of dental pulp, together with its natural sterility, makes it a suitable material on...

Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts"

DEFF Research Database (Denmark)

Gilbert, Marcus Thomas Pius; Miller, Webb; Schuster, Stephan C.

2008-01-01

Debruyne et al. challenge the findings of our study and imply that we argue that hair shafts are an overall superior source of ancient DNA than bone. However, the authors are misreading and misinterpreting the conclusions of our study; we claim nothing further than that hair shaft represents...

Metastable equilibrium solubility behavior of carbonated apatite in the presence of solution strontium.

Science.gov (United States)

Heslop, D D; Bi, Y; Baig, A A; Higuchi, W I

2004-01-01

The purpose of this study was to use the concept of metastable equilibrium solubility (MES) to describe the anomalous solubility behavior of carbonated apatite (CAP) in the presence of solution strontium. A CAP sample (4.8 wt% CO(3), synthesized at 70 degrees C) was prepared by precipitation. Baseline MES distributions were determined in a series of 0.1 M acetate buffers containing only calcium and phosphate (no strontium) over a broad range of solution conditions. In order to assess the influence of strontium, MES profiles were then determined in a similar fashion with 20, 30, 40, 50, 60, 70, and 80% of the solution calcium being replaced on an equal molar basis by solution strontium. From the compositions of the equilibrating buffer solutions, ion activity products (IAPs) of the form Ca(10-n)Sr(n)(PO(4))(6)(OH)(2) (n = 0-10) were calculated in an attempt to determine the correct function governing the dissolution of the CAP preparation. The results demonstrate the following important findings: (a) at high solution strontium/calcium ratios (i.e., when 60% or more of the solution calcium was replaced by strontium), the MES profiles in all the experiments were found to be essentially superimposable when the solution IAPs were calculated using the stoichiometry of Ca(6)Sr(4)(PO(4))(6)(OH)(2), and (b), at low solution strontium/calcium ratios (i.e., when 40% or less of the solution calcium was replaced by strontium), the stoichiometry yielding MES data superpositioning was found to be that of hydroxyapatite. When other stoichiometries were assumed, good superpositioning of the data was not possible.

Apps for Ancient Civilizations

Science.gov (United States)

Thompson, Stephanie

2011-01-01

This project incorporates technology and a historical emphasis on science drawn from ancient civilizations to promote a greater understanding of conceptual science. In the Apps for Ancient Civilizations project, students investigate an ancient culture to discover how people might have used science and math smartphone apps to make their lives…

DETERMINATION OF STRONTIUM IONS IN WATERS WITH A HIGH CONTENT OF SODIUM IONS

Directory of Open Access Journals (Sweden)

Tatiana Mitina

2015-06-01

Full Text Available This paper reports on the influence of sodium ions on experimental determination of strontium ions concentration in waters with a high content of sodium ions by using emission flame photometry and atomic absorption spectroscopy. For the method of emission flame photometry it was shown that at a wavelength of 460.7 nm (spectral emission line of strontium the emission is linearly dependent on the concentration of sodium ions. The greatest impact of high concentrations of sodium ions on the result of determination the strontium ions concentration has been registered at low levels of strontium. The influence of nitric acid on the results is also discussed. In the case of using atomic absorption spectroscopy method no influence of sodium ions and nitric acid on the results of determination the strontium ions concentration was revealed. The metrological characteristics of both methods are evaluated.

Barium iodide and strontium iodide crystals andd scintillators implementing the same

Science.gov (United States)

Payne, Stephen A; Cherepy, Nerine J; Hull, Giulia E; Drobshoff, Alexander D; Burger, Arnold

2013-11-12

In one embodiment, a material comprises a crystal comprising strontium iodide providing at least 50,000 photons per MeV. A scintillator radiation detector according to another embodiment includes a scintillator optic comprising europium-doped strontium iodide providing at least 50,000 photons per MeV. A scintillator radiation detector in yet another embodiment includes a scintillator optic comprising SrI.sub.2 and BaI.sub.2, wherein a ratio of SrI.sub.2 to BaI.sub.2 is in a range of between 0:1 A method for manufacturing a crystal suitable for use in a scintillator includes mixing strontium iodide-containing crystals with a source of Eu.sup.2+, heating the mixture above a melting point of the strontium iodide-containing crystals, and cooling the heated mixture near the seed crystal for growing a crystal. Additional materials, systems, and methods are presented.

Effect of selected foodstuffs on strontium 89 metabolism in rats

International Nuclear Information System (INIS)

Keslev, D.; Jotov, M.

1975-01-01

The influence of a variety of food products used in human nutrition on strontium-89 cumulation in rat organism is studied. To this end the animals were fed for a week with meat, beans, maize, white and brown bread, cabbage, milk or potatoes prepared so as to be edible by man. Then for additional 15 days the animals were fed the same diet + a daily oral dose of 2 μCi strontium-89. On the 16th day radionuclide activity in the thigh bone was measured. Beans was the food product exerting optimal limiting effect on strontium deposition (reduction factor (RF) 17), milk and ranking next (RF 13, resp. 6.5). All other products showed approximately equal efforts (RF 1.4 - 1.8). The different calcium content of each of these food products is responsible for their different effectiveness. Together with the discrimination which the living organism displays in the presence of calcium, other constituents of the food products which form complexes with strontium and prevent its deposition in the bones are equally essential. (Ch.K.)

[Effects of strontium in drinking water on the growth of school-age children].

Science.gov (United States)

Tao, Y; Cao, S; Xu, F; Li, J

1999-09-30

An epidemiological study on the effect of strontium in drinking water on body shape development, bone age, prevalence of caries and dental fluorosis was carried out. The results show: there is a certain promotion on the development of bone age of school-age children, especially of girls, and there is no obvious impact on body shape developing when the concentration of strontium in drinking water is only 10 mg/L. The correlation between strontium in drinking water and the prevalence of caries in children could not get a conclusive evidence in this paper. A further epidemiological investigation is necessary if the role of strontium against caries should be proved.

The strontium isotopic composition of seawater, and seawater-oceanic crust interaction

International Nuclear Information System (INIS)

Spooner, E.T.C.

1976-01-01

The 87 Sr/ 86 Sr ratio of seawater strontium (0.7091) is less than the 87 Sr/ 86 Sr ratio of dissolved strontium delivered to the oceans by continental run-off (approximately 0.716). Isotope exchange with strontium isotopically lighter oceanic crust during hydrothermal convection within spreading oceanic ridges can explain this observation. In quantitative terms, the current 87 Sr/ 86 Sr ratio of seawater (0.7091) may be maintained by balancing the continental run-off flux of strontium (0.59 x 10 12 g/yr) against a hydrothermal recirculation flux of 3.6 x 10 12 g/yr, during which the 87 Sr/ 86 Sr ratio of seawater drops by 0.0011. A concomitant mean increase in the 87 Sr/ 86 Sr ratio of the upper 4.5 km of oceanic crust of 0.0010 (0.7029-0.7039) should be produced. This required 87 Sr enrichment has been observed in hydrothermally metamorphosed ophiolitic rocks from the Troodos Massif, Cyprus. The post-Upper Cretaceous increase in the strontium isotopic composition of seawater (approximately 0.7075-0.7091) covaries smoothly with inferred increase in land area. This suggests that during this period the main factor which has caused variability in the 87 Sr/ 86 Sr ratio of seawater strontium could have been variation in the magnitude of the continental run-off flux caused by variation in land area. Variations in land area may themselves have been partly a consequence of variations in global mean sea-floor spreading rate. (Auth.)

Sr-89 therapy: Strontium kinetics in disseminated carcinoma of the prostate

International Nuclear Information System (INIS)

Blake, G.M.; Zivanovic, M.A.; McEwan, A.J.; Ackery, D.M.

1986-01-01

Strontium kinetics were investigated in a group of 14 patients receiving 89 Sr palliation for metastatic bone disease secondary to prostatic carcinoma. Using 85 Sr as a tracer, total body strontium retention R(t) was monitored for a 3 month period following 89 Sr administration, and at 90 days was found to vary from 11% to 88% and to correlate closely with the fraction of the skeleton showing scintigraphic evidence of osteoblastic metastatic involvement. Strontium renal plasma clearance varied from 1.6l/ day to 11.6l/day, and in nine patients was significantly reduced compared with values found in healthy adult men, probably due to increased renal tubular reabsorption associated with the disturbance of calcium homoeostasis. Renal clearance rate was the principal factor determining R(t) for t 30 (t/30) -b , with R 30 and b showing the close correlation expected from the effect of R(t) on strontium recycling. The correction of the data for this effect to determine the true skeletal release rate is described. Measurement of localized strontium turnover in individual metastatic deposits from whole body profiles and scintigraphic images gave retention curves that typically rose to a plateau by 10 days after therapy, and then decreased very slowly. In contrast, retention curves for adjacent normal trabecular bone showed more rapid turnover, peaking at 1 day and subsequently decreasing following a t -0.2 power law function. The changes in strontium kinetics found in metastatic bone disease are favourable to the objectives of 89 Sr therapy. (orig.)

Towards the onset of fruit tree growing north of the Alps: ancient DNA from waterlogged apple (Malus sp.) seed fragments.

Science.gov (United States)

Schlumbaum, Angela; van Glabeke, Sabine; Roldan-Ruiz, Isabel

2012-01-20

Wild apples (Malus sp.) have been a major food source in the northern Alpine region since prehistory and their use is well understood. The onset of deliberate fruit tree growing in the area is, however, less clear. It is generally assumed that horticulture was practised in Roman times, but it might be even earlier. In the archaeological record seed testa and pericarp remains are particularly frequent at sites with waterlogged preservation such as lakeshore settlements or wells, pits and ditches, but the distinction between wild and domestic plants is not morphologically possible. With waterlogged remains being one main source of information about past fruit cultivation, we have tested the feasibility of analysing ancient DNA from waterlogged preserved bulk samples of testa fragments. We studied apple seeds from three Neolithic and three Roman sites with waterlogged preservation in the Alpine foreland. Chloroplast markers failed in all samples, but nuclear ITS1 (internal transcribed spacer region 1) of the ribosomal DNA was successfully typed in two Roman samples from the site Oedenburg/Biesheim-Kunheim (Haut-Rhin, F). The retrieved ITS1 sequences are identical to each other and are shared with wild Malus sylvestris and Malus sieversii, and with domestic apple cultivars, supporting the potential of using waterlogged remains for identifying the genetic status of apple diachronically. Copyright © 2011 Elsevier GmbH. All rights reserved.

Mycobacterium leprae genomes from a British medieval leprosy hospital: towards understanding an ancient epidemic.

Science.gov (United States)

Mendum, Tom A; Schuenemann, Verena J; Roffey, Simon; Taylor, G Michael; Wu, Huihai; Singh, Pushpendra; Tucker, Katie; Hinds, Jason; Cole, Stewart T; Kierzek, Andrzej M; Nieselt, Kay; Krause, Johannes; Stewart, Graham R

2014-04-08

Leprosy has afflicted humankind throughout history leaving evidence in both early texts and the archaeological record. In Britain, leprosy was widespread throughout the Middle Ages until its gradual and unexplained decline between the 14th and 16th centuries. The nature of this ancient endemic leprosy and its relationship to modern strains is only partly understood. Modern leprosy strains are currently divided into 5 phylogenetic groups, types 0 to 4, each with strong geographical links. Until recently, European strains, both ancient and modern, were thought to be exclusively type 3 strains. However, evidence for type 2 strains, a group normally associated with Central Asia and the Middle East, has recently been found in archaeological samples in Scandinavia and from two skeletons from the medieval leprosy hospital (or leprosarium) of St Mary Magdalen, near Winchester, England. Here we report the genotypic analysis and whole genome sequencing of two further ancient M. leprae genomes extracted from the remains of two individuals, Sk14 and Sk27, that were excavated from 10th-12th century burials at the leprosarium of St Mary Magdalen. DNA was extracted from the surfaces of bones showing osteological signs of leprosy. Known M. leprae polymorphisms were PCR amplified and Sanger sequenced, while draft genomes were generated by enriching for M. leprae DNA, and Illumina sequencing. SNP-typing and phylogenetic analysis of the draft genomes placed both of these ancient strains in the conserved type 2 group, with very few novel SNPs compared to other ancient or modern strains. The genomes of the two newly sequenced M. leprae strains group firmly with other type 2F strains. Moreover, the M. leprae strain most closely related to one of the strains, Sk14, in the worldwide phylogeny is a contemporaneous ancient St Magdalen skeleton, vividly illustrating the epidemic and clonal nature of leprosy at this site. The prevalence of these type 2 strains indicates that type 2F strains

Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death.

Science.gov (United States)

Schuenemann, Verena J; Bos, Kirsten; DeWitte, Sharon; Schmedes, Sarah; Jamieson, Joslyn; Mittnik, Alissa; Forrest, Stephen; Coombes, Brian K; Wood, James W; Earn, David J D; White, William; Krause, Johannes; Poinar, Hendrik N

2011-09-20

Although investigations of medieval plague victims have identified Yersinia pestis as the putative etiologic agent of the pandemic, methodological limitations have prevented large-scale genomic investigations to evaluate changes in the pathogen's virulence over time. We screened over 100 skeletal remains from Black Death victims of the East Smithfield mass burial site (1348-1350, London, England). Recent methods of DNA enrichment coupled with high-throughput DNA sequencing subsequently permitted reconstruction of ten full human mitochondrial genomes (16 kb each) and the full pPCP1 (9.6 kb) virulence-associated plasmid at high coverage. Comparisons of molecular damage profiles between endogenous human and Y. pestis DNA confirmed its authenticity as an ancient pathogen, thus representing the longest contiguous genomic sequence for an ancient pathogen to date. Comparison of our reconstructed plasmid against modern Y. pestis shows identity with several isolates matching the Medievalis biovar; however, our chromosomal sequences indicate the victims were infected with a Y. pestis variant that has not been previously reported. Our data reveal that the Black Death in medieval Europe was caused by a variant of Y. pestis that may no longer exist, and genetic data carried on its pPCP1 plasmid were not responsible for the purported epidemiological differences between ancient and modern forms of Y. pestis infections.

Strontium zirconate as silicon and aluminum scavenger in yttria stabilized zirconia

DEFF Research Database (Denmark)

Andersen, Thomas; Hansen, Karin Vels; Chorkendorff, Ib

2011-01-01

Here we report on strontium zirconate as a getter for silicon dioxide and aluminum oxide in yttria stabilized zirconia (YSZ) single crystals for cleaning purposes. YSZ single crystals were covered with strontium zirconate powder and heat treated at 1450°C in water vapor. After treatment the YSZ...... by transmission electron microscopy (TEM) the interface region between bump and YSZ single crystal bulk was examined. EDS showed a homogeneous distribution of silicon and aluminum through the cross section of a bump. The results suggest strontium zirconate as a good getter for silicon and aluminum from bulk...

Towards next-generation biodiversity assessment using DNA metabarcoding

DEFF Research Database (Denmark)

Taberlet, Pierre; Coissac, Eric; Pompanon, Francois

2012-01-01

Virtually all empirical ecological studies require species identification during data collection. DNA metabarcoding refers to the automated identification of multiple species from a single bulk sample containing entire organisms or from a single environmental sample containing degraded DNA (soil......, water, faeces, etc.). It can be implemented for both modern and ancient environmental samples. The availability of next-generation sequencing platforms and the ecologists need for high-throughput taxon identification have facilitated the emergence of DNA metabarcoding. The potential power of DNA...

Formation of barium strontium titanate powder by solid state reaction using different calcination temperatures

International Nuclear Information System (INIS)

Teoh Wah Tzu; Ahmad Fauzi Mohd Noor; Zainal Arifin Ahmad

2002-01-01

The unique electrical properties of large permittivity in Barium Strontium Titanate have been widely used to make capacitors; it can be produced by solid state reaction. In this study, the mixture of Barium Carbonate, Strontium Carbonate and Titanium Dioxide was calcined at 500 degree C, 1000 degree C, 1100 degree C , 1150 degree C, 1200 degree C, 1250 degree C and 1300 degree C. The results of the phases change in each stage were investigated via X ay Diffraction. The results show that the formation of Barium Strontium Titanate started at 1100 degree C with the presence of other phases. The mixture is fully reacted to form Barium Strontium Titanate at 1150 degree C. Only Barium Strontium Titanate was formed as the calcination temperature was set higher. (Author)

Literature survey of strontium-89/90 analysis

International Nuclear Information System (INIS)

Kwakman, P.J.M.

1994-08-01

At the RIVM Laboratory of Radiation Research (LSO), the determination of strontium-89/90 in grass and milk samples using fuming nitric acid is a bottle neck in the routine monitoring programme, mainly due to the use of hazardous chemicals. In recent scientific articles, a number of alternatives have been described. This report gives an overview of the latest developments in this field and compares the pros and cons of these methods. The most promising method appears to be the 'Sr-spec' method developed by EIChrom Industries. In this method, an ion-exchanger is used for sorption of cations from the sample solution and, subsequently, a crown ether on a polymer support is applied for the selective complexation of bivalent strontium ions in the presence of other interfering bivalent ions. An important advantage is that the hazardous fuming nitric acid can be omitted and that the total number of chemical separation steps can be largely reduced. The possibility of a routine application of the 'Sr-spec' method for the determination of strontium-89/90 in grass and milk at RIVM/LSO is proposed. 2 tabs., 1 appendix, 23 refs

Quantification and presence of human ancient DNA in burial place ...

African Journals Online (AJOL)

STORAGESEVER

2009-10-19

Oct 19, 2009 ... burial place remains of Turkey using real time ... DNA was isolaled from fossil bone tissue remains with Bio Robot EZ1 and ... the increase in the amount of DNA as it is amplified. The ... species or human blood in this work.

Effects of strontium stress on antioxidant characteristics of oilseed rape seedling

International Nuclear Information System (INIS)

Ao Jia; Tang Yunlai; Chen Mei; An Bing; Wang Dan; Tao Yang

2010-01-01

Seedlings of oilseed rape (Brassica napus L.) were treated with different concentration of Sr 2+ (0, 10, 20, 40 mmol/L SrCl 2 ) for 0, 7, 14, 21 days under quartz sand and Hoagland solution culture, and the antioxidant characteristics and Sr 2+ accumulation of seedling were investigated. Rape seedlings showed high accumulation capacity for strontium, especial the leaves. But the accumulation capacity declined with the increasing of Sr 2+ concentration. The activity of superoxide dismutase (SOD) and the content of malondialdehyde (MDA) increased with the increasing of Sr 2+ concentration and then declined with the extention of the stress time. The activity of catalase (CAT) and peroxidase (POD) declined with the increasing of the Sr 2+ accumulation capacity. This study showed that oilseed rape had a very high strontium-tolerant and strontium-uptake capacity, and leaf was the organ that accumulates most of strontium. The accumulation capacity and activity of CAT, POD exhibited a significantly-negative correlation. (authors)

Biosorption of strontium ions from aqueous solution using modified eggshell materials

Energy Technology Data Exchange (ETDEWEB)

Metwally, Sayed S.; Rizk, Hoda E.; Gasser, Mona S. [Atomic Energy Authority, Cairo (Egypt). Hot Laboratories Center

2017-07-01

Green composites emphasize renewable starting materials for better economy using biomass materials. Therefore, low-cost composite biosorbent was prepared by modification of eggshell material using heteropoly acid for removal of strontium ions from aqueous solution. The resulted composite was characterized and evaluated for the sorption process using the batch technique. Low concentration of strontium ions was used to evaluate the sorption sensitivity of the prepared composite. The obtained experimental results illustrated that the modification process of eggshell material enhanced the percent uptake from 49.9 to 95.7%. From kinetic studies, the sorption of strontium ions follows the pseudo-second-order kinetic model. The isotherm studies indicated that Langmuir is more applicable than Freundlich isotherm. Moreover, Dubinin-Radushkevich isotherm was studied. Thermodynamic studies revealed that the sorption process is spontaneous and has endothermic nature. Strontium ions can be desorbed from the modified eggshell using HNO{sub 3}, desorption percent was found to be 96.4%; the results revealed the reusability of the modified eggshell for further sorption.

Study of the kinetics of strontium elimination in the rat; Etude de la cinetique de l'elimination du strontium chez le rat

Energy Technology Data Exchange (ETDEWEB)

Guilloux, M J; Michon, G [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

1958-07-01

A kinetic study of strontium elimination was made on rats after a single oral administration of 3 to 5 {mu}curies of carrier free Sr{sup 90}. The curve showing the body burden in function of time may be considered as the sum of three exponential terms with half-lives of 14 hours, 72 days, 153 days. The term with a half-live of 153 days represents the metabolism of strontium in the bone; it is predominant since the 17. day and its extrapolation to time zero shows that things seem to proceed as if 18 per cent of the administered amount were deposited in the skeleton. (author) [French] La cinetique de l'elimination du strontium chez le rat a ete etudiee apres une administration orale unique de 3 a 5 {mu}curies de {sup 90}Sr repute sans entraineur. La courbe representant la quantite presente dans l'organisme en fonction du temps peut etre assimilee a la somme de trois termes exponentiels de periode 14 heures, 72 jours, 153 jours. Le terme de periode 153 jours represente le metabolisme osseux du strontium, il est preponderant des le 17. jour et son extrapolation au temps zero nous montre qu'en definitive, tout se passe comme si 18 pour cent de la quantite administree etaient deposes dans le squelette. (auteur)

A code of ethics for evidence-based research with ancient human remains.

Science.gov (United States)

Kreissl Lonfat, Bettina M; Kaufmann, Ina Maria; Rühli, Frank

2015-06-01

As clinical research constantly advances and the concept of evolution becomes a strong and influential part of basic medical research, the absence of a discourse that deals with the use of ancient human remains in evidence-based research is becoming unbearable. While topics such as exhibition and excavation of human remains are established ethical fields of discourse, when faced with instrumentalization of ancient human remains for research (i.e., ancient DNA extractions for disease marker analyses) the answers from traditional ethics or even more practical fields of bio-ethics or more specific biomedical ethics are rare to non-existent. The Centre for Evolutionary Medicine at the University of Zurich solved their needs for discursive action through the writing of a self-given code of ethics which was written in dialogue with the researchers at the Institute and was published online in Sept. 2011: http://evolutionäremedizin.ch/coe/. The philosophico-ethical basis for this a code of conduct and ethics and the methods are published in this article. © 2015 Wiley Periodicals, Inc.

Placental transfer of calcium and strontium and of their radionuclides

International Nuclear Information System (INIS)

Griessl, I.; Stieve, F.E.

1987-11-01

The first part of the report deals with the occurrence and the chemistry of strontium and its radioisotopes, and the second part discusses the calcium and the strontium metabolism in man. General information on the biology and physiology of the human skeleton is given in part 3, whereas part 4 again discusses the calcium and strontium metabolism in man, however with particular emphasis on the conditions during pregnancy and lactation. Part 5 presents an evaluation of the literature in this subject field, concentrating on results obtained with experimental animals such as cows, swine, dogs, guinea pigs, rats, and mice, and discusses the applicability of these findings to the conditions in man. An annex presents data on the yttrium metabolism in man and animal. (MG) [de

A study on provenance relation between Jiaotanxia ancient Guan porcelain and Qingliangsi ancient Ru porcelain by NAA

International Nuclear Information System (INIS)

Li Rongwu; Feng Songlin; Huang Zhongxiang; Jia Xiuqin

2004-01-01

11 samples of ancient Chinese Ru porcelain from Qingliangsi kiln, 23 samples of ancient Chinese Guan porcelain from Jiaotanxia kiln and 4 samples of modern archaized Guan porcelain were obtained to determine the contents of elements in each of them by neutron activation analysis (NAA). The NAA data were further analyzed using fuzzy cluster analysis to obtain the fuzzy cluster trend diagrams for the bodies' samples and the glazes samples respectively. The analysis shows that the raw material origins of the Jiaotanxia ancient Chinese Guan porcelain bodies samples are very concentrated; those of the Qingliangsi ancient Chinese Ru porcelain bodies samples are a little dispersed; those of ancient Chinese Guan porcelain glazes samples are relatively concentrated; those of ancient Chinese Ru porcelain glazes samples are dispersed; and the origins of the raw material of ancient Chinese Guan porcelain glazes samples are obviously different from those of ancient Chinese Ru porcelain glazes samples. The bodies samples and glazes samples of Jiaotanxia ancient Chinese Guan porcelain and those of Qingliangsi ancient Chinese Ru porcelain have some difference but can be compared with each other. (authors)

Thermoluminescence of strontium tetraborate

International Nuclear Information System (INIS)

Santiago, M.; Caselli, E.; Lester, M.

1999-01-01

The thermoluminescent properties of crystalline strontium tetraborate are reported. Without activators it has an efficiency comparable to that of TLD-700 powder. Its fading after 40 days amount to less than 2%. The isometric plot shows that most of the emitted light is concentrated at wavelengths ranging from 350 to 450 nm, which accounts partially for the high efficiency. (author)

The concentration of active and inactive strontium in some Danube river samples

International Nuclear Information System (INIS)

Koshutich, K.; Lulich, S.

1985-01-01

The following fish species were investigated: Barbus barbus, Acipencer ruthenus, Abramis brama, Stizostedion lucioperca, Silurus glanis, Cyprinus caprio. The samples were collected during 1981. The inactive strontium in the water residue (after evaporation), sediment and fishes ewrw determined by nondestructive neutron activation analysis by using gamma couting system consisted of a 40 cm 3 Ge(Li) semiconductor rystal attached to a 4096-channel pulsehight analyser. The standard solution contained 5x10 -5 g of strontium per 100 lambda. Radioactive strontium was measured after several separation procedures. 90 SrCO 3 in equilibrium with its daughter 90 Y was detected in the β-low-level counting anticoincident system with gas-flow detector. The results confirmed the literature data that the sediment concentrations of the total strontium and the active 90 Sr are several times greater than those in water

Bio sorption of strontium from aqueous solution by the new strain of bacillus sp. strain GT-83

International Nuclear Information System (INIS)

Tajer Mohammad Ghazvini, P.; Ghorbanzadeh Mashkani, S.; Mazaheri, M.

2009-01-01

An attempt was made to isolate bacterial strains capable of removing strontium biologically. In this study ten different water samples collected from Neydasht spring in the north of Iran and then the bacterial species were isolated from the water samples. The initial screening of a total of 50 bacterial isolates resulted in selection of one strain.The isolated strain showed a maximum adsorption capacity with 55 milligrams strontium/g dry wt. It was tentatively identified as Bacillus sp. According to the morphological and biochemical properties, and called strain GT-83. Our studies indicated that Bacillus sp. GT-83 is able to grow aerobically in the presence of 50 mM SrCl 2 , but its growth was inhibited at high levels of strontium concentrations. The bio sorption capacity of Bacillus sp. GT-83 depends strongly on the p H solution. Hence the maximum strontium sorption capacity of Bacillus sp. GT-83 was obtained at pah 10, independent of absence or presence of MgCl 2 of different concentrations. Strontium-salt bio sorption studies were also performed at this p H values. The equilibrium bio sorption of strontium was elevated by increasing the strontium concentration, up to 250 milligrams/l for Bacillus sp. GT-83. The maximum bio sorption of strontium was obtained at temperatures in the range of 30-35 d eg C . The Bacillus sp. GT-83 bio sorbed 97 milligrams strontium/g dry wt at 100 milligrams/l initial strontium concentration without MgCl 2 . When MgCl 2 concentration increased to 15%(w/v), these values dropped to 23.6 milligrams strontium/g dry wt at the same conditions. Uptake of strontium within 5 min of incubation was relatively rapid and the absorption continued slowly thereafter

Thermodynamic study on the adsorption of strontium on polyantimonic acid exchanger

International Nuclear Information System (INIS)

Li Mingyu; Chen Jing; Wang Jianchen; Zhao Jing

2007-01-01

The adsorption of strontium on the polyantimonic acid adsorbent was studied. The equilibrium data for the adsorption of strontium on polyantimonic acid exchanger from aqueous solutions were obtained and correlated with Langmuir-type and Freundlich-type isotherm equation within the temperature range of 293-323 K and the experimental concentration range. Freundlich adsorption isotherms and the isosteric enthalpy indicate that the adsorption of strontium on polyantimonic acid is an endothermic process from aqueous solutions. The enthalpy, free energy, and entropy of adsorption were calculated. The results indicate that the adsorption process is a complex interaction of physical and chemical processes. The adsorption behaviors were reasonably explained. (authors)

Ancient mitochondrial DNA and the genetic history of Eurasian beaver (Castor fiber) in Europe.

Science.gov (United States)

Horn, Susanne; Prost, Stefan; Stiller, Mathias; Makowiecki, Daniel; Kuznetsova, Tatiana; Benecke, Norbert; Pucher, Erich; Hufthammer, Anne K; Schouwenburg, Charles; Shapiro, Beth; Hofreiter, Michael

2014-04-01

After centuries of human hunting, the Eurasian beaver Castor fiber had disappeared from most of its original range by the end of the 19th century. The surviving relict populations are characterized by both low genetic diversity and strong phylogeographical structure. However, it remains unclear whether these attributes are the result of a human-induced, late Holocene bottleneck or already existed prior to this reduction in range. To investigate genetic diversity in Eurasian beaver populations during the Holocene, we obtained mitochondrial control region DNA sequences from 48 ancient beaver samples and added 152 modern sequences from GenBank. Phylogeographical analyses of the data indicate a differentiation of European beaver populations into three mitochondrial clades. The two main clades occur in western and eastern Europe, respectively, with an early Holocene contact zone in eastern Europe near a present-day contact zone. A divergent and previously unknown clade of beavers from the Danube Basin survived until at least 6000 years ago, but went extinct during the transition to modern times. Finally, we identify a recent decline in effective population size of Eurasian beavers, with a stronger bottleneck signal in the western than in the eastern clade. Our results suggest that the low genetic diversity and the strong phylogeographical structure in recent beavers are artefacts of human hunting-associated population reductions. While beaver populations have been growing rapidly since the late 19th century, genetic diversity within modern beaver populations remains considerably reduced compared to what was present prior to the period of human hunting and habitat reduction.

Study of sorption processes of strontium on the synthetic hydroxyapatite

International Nuclear Information System (INIS)

Rosskopfova, O.; Galambos, M.; Rajec, P.

2011-01-01

The sorption of strontium on synthetic hydroxyapatite was investigated using batch method and radiotracer technique. The hydroxyapatite samples were prepared by a wet precipitation process followed by calcination of calcium phosphate that precipitated from aqueous solution. Also, commercial hydroxyapatites were used. The sorption of strontium on hydroxyapatite depended on the method of preparation and it was pH independent ranging from 4 to 9 as a result of buffering properties of hydroxyapatite. The distribution coefficient K d was significantly decreased with increasing concentration of Sr 2+ and Ca 2+ ions in solution with concentration above 1 x 10 -3 mol dm -3 . The percentage strontium sorption for commercial and by wet method prepared hydroxyapatite was in the range of 83-96%, while calcined hydroxyapatite was ranging from 10 to 30%. The experimental data for sorption of strontium have been interpreted in the term of Langmuir isotherm. The sorption of Sr 2+ ions was performed by ion-exchange with Ca 2+ cations on the crystal surface of hydroxyapatite. Although calcined hydroxyapatite is successfully used as biomaterial for hard tissues repair, it is not used for the treatment of liquid wastes. (author)

Strontium titanate thin film deposition - structural and electronical characterization

Energy Technology Data Exchange (ETDEWEB)

Hanzig, Florian; Hanzig, Juliane; Stoecker, Hartmut; Mehner, Erik; Abendroth, Barbara; Meyer, Dirk C. [TU Bergakademie Freiberg, Institut fuer Experimentelle Physik (Germany); Franke, Michael [TU Bergakademie Freiberg, Institut fuer Elektronik- und Sensormaterialien (Germany)

2012-07-01

Strontium titanate is on the one hand a widely-used model oxide for solids which crystallize in perovskite type of structure. On the other hand, with its large band-gap energy and its mixed ionic and electronic conductivity, SrTiO{sub 3} is a promising isolating material in metal-insulator-metal (MIM) structures for resistive switching memory cells. Here, we used physical vapour deposition methods (e. g. electron-beam and sputtering) to produce strontium titanate layers. Sample thicknesses were probed with X-ray reflectometry (XRR) and spectroscopic ellipsometry (SE). Additionally, layer densities and dielectric functions were quantified with XRR and SE, respectively. Using infrared spectroscopy free electron concentrations were obtained. Phase and element composition analysis was carried out with grazing incidence X-ray diffraction and X-ray photoelectron spectroscopy. Subsequent temperature treatment of samples lead to crystallization of the initially amorphous strontium titanate.

Strontium borate glass: potential biomaterial for bone regeneration.

Science.gov (United States)

Pan, H B; Zhao, X L; Zhang, X; Zhang, K B; Li, L C; Li, Z Y; Lam, W M; Lu, W W; Wang, D P; Huang, W H; Lin, K L; Chang, J

2010-07-06

Boron plays important roles in many life processes including embryogenesis, bone growth and maintenance, immune function and psychomotor skills. Thus, the delivery of boron by the degradation of borate glass is of special interest in biomedical applications. However, the cytotoxicity of borate glass which arises with the rapid release of boron has to be carefully considered. In this study, it was found that the incorporation of strontium into borate glass can not only moderate the rapid release of boron, but also induce the adhesion of osteoblast-like cells, SaOS-2, thus significantly increasing the cyto-compatibility of borate glass. The formation of multilayers of apatite with porous structure indicates that complete degradation is optimistic, and the spread of SaOS-2 covered by apatite to form a sandwich structure may induce bone-like tissue formation at earlier stages. Therefore, such novel strontium-incorporated borosilicate may act as a new generation of biomaterial for bone regeneration, which not only renders boron as a nutritious element for bone health, but also delivers strontium to stimulate formation of new bones.

A comparison of the palliative effects of strontium-89 and external beam radiotherapy in metastatic prostate cancer

International Nuclear Information System (INIS)

Quilty, P.M.; Kirk, D.; Bolger, J.J.; Dearnaley, D.P.; Mason, M.D.; Lewington, V.J.; Reed, N.S.E.; Russell, J.M.; Yardley, J.

1994-01-01

From 1988 to 1991, 284 patients with prostatic cancer and painful bone metastases were treated with either radiotherapy or strontium-89 (200 MBq). Patients were first stratified according to suitability for local or hemibody radiotherapy, then randomly allocated that form of treatment or strontium-89 (i.v. injection). After 4,8 and 12 weeks pain sites were mapped, toxicity monitored, and all additional palliative treatments recorded. There was no significant difference in median survival (after >80% had died); 33 weeks following strontium 8 9 and 28 weeks following radiotherapy (p=0.1). All treatments provided effective pain relief; improvement was sustained to 3 months in 63.6% after hemibody radiotherapy compared with 66.1% after strontium-89, and in 61% after local radiotherapy compared with 65.9% in the comparable strontium 8 9 group. Fewer patients reported new pain sites after strontium-89 than after local or hemibody radiotherapy (p < 0.05). Radiotherapy to a new site was required by 12 patients in the local radiotherapy group compared with 2 after strontium-89 (p < 0.01), although there was no significant difference between hemibody radiotherapy (6 patients) and strontium-89 (9 patients) in this respect. Platelets and leukocytes fell by an average 30-40% after strontium-89 but sequelae were uncommon, and other symptoms rare

Strontium D-Glutamate Hexahydrate and Strontium Di(hydrogen L-glutamate) Pentahydrate

DEFF Research Database (Denmark)

Christgau, Stephan; Odderhede, Jette; Stahl, Kenny

2005-01-01

Sr(C5H7NO4)] center dot 6H(2)O, ( I), and [Sr(C5H8NO4)(2)] center dot 5H(2)O, (II), both crystallize with similar strontium - glutamate - water layers. In ( I), the neutral layers are connected through hydrogen bonds by water molecules, while in ( II), the positively charged layers are connected...... through hydrogen bonds and electrostatic interactions by interleaving layers of hydrogen glutamate anions and water molecules....

Isolation of radioactive strontium from natural samples. Separation of strontium from alkaline and alkaline earth elements by means of mixed solvent anion exchange

International Nuclear Information System (INIS)

Grahek, Z.; Kosutic, K.; Lulic, S.; Kvastek, K.; Eskinja, I.

1999-01-01

This paper presents the results of studies which led to the procedures for the chromatographic separation of radioactive strontium from alkaline, earth-alkaline and other elements in natural samples, on columns filled with strong base anion exchangers using alcoholic solutions of nitric acid as eluents. It has been shown that potassium, caesium, calcium, barium, yttrium and strontium can be adsorbed on strong base anion exchangers of the Dowex and Amberlite type, which contain the quaternary ammonium group with nitrate as counter-ion, from solutions of nitric acid in alcohol. Adsorption strength increases in the order methanol 3 in methanol, while they are adsorbed from ethanol and propanol. The adsorption strength is influenced by the polarity of alcohol, by the concentration of nitrate and by pH. The strength with which strontium adsorbs on the exchangers increases in the interval from 0 to 0.25M NH 4 NO 3 in methanol, after which it starts to decrease. Strontium adsorbs to the exchangers from the alcoholic solution of ammonium nitrate twice as strongly as from the alcoholic solution of nitric acid, while a fraction of water in pure alcohol exceeding 10% prevents adsorption. In the mixture of alcohol and nitric acid, the adsorption strength for calcium and strontium increases with the increase of the volume fraction of alcohol with a lower dielectric constant. The rate and strength of adsorption of ions on the exchanger also increase in the series 0.25M HNO 3 in methanol 3 in ethanol 3 in 1-propanol for each individual ion, as well as in the Ca 3 in methanol, 0.25M HNO 3 in ethanol and 0.25M HNO 3 in propanol. Separation is also possible from alcohol mixtures. Strontium separation is most difficult from calcium, while the efficiency of separation increases with a decrease of the polarity of the used alcohol or alcohol mixture. The first group elements of the periodic table are not separated from each other in this way, while the elements of the second group are

Lanthanide doped strontium-barium cesium halide scintillators

Science.gov (United States)

Bizarri, Gregory; Bourret-Courchesne, Edith; Derenzo, Stephen E.; Borade, Ramesh B.; Gundiah, Gautam; Yan, Zewu; Hanrahan, Stephen M.; Chaudhry, Anurag; Canning, Andrew

2015-06-09

The present invention provides for a composition comprising an inorganic scintillator comprising an optionally lanthanide-doped strontium-barium, optionally cesium, halide, useful for detecting nuclear material.

Sorption of strontium on uranyl peroxide: implications for a high-level nuclear waste repository.

Science.gov (United States)

Sureda, Rosa; Martínez-Lladó, Xavier; Rovira, Miquel; de Pablo, Joan; Casas, Ignasi; Giménez, Javier

2010-09-15

Strontium-90 is considered the most important radioactive isotope in the environment and one of the most frequently occurring radionuclides in groundwaters at nuclear facilities. The uranyl peroxide studtite (UO2O2 . 4H2O) has been observed to be formed in spent nuclear fuel leaching experiments and seems to have a relatively high sorption capacity for some radionuclides. In this work, the sorption of strontium onto studtite is studied as a function of time, strontium concentration in solution and pH. The main results obtained are (a) sorption is relatively fast although slower than for cesium; (b) strontium seems to be sorbed via a monolayer coverage of the studtite surface, (c) sorption has a strong dependence on ionic strength, is negligible at acidic pH, and increases at neutral to alkaline pH (almost 100% of the strontium in solution is sorbed above pH 10). These results point to uranium secondary solid phase formation on the spent nuclear fuel as an important mechanism for strontium retention in a high-level nuclear waste repository (HLNW). Copyright 2010 Elsevier B.V. All rights reserved.

Ancient DNA analysis reveals high frequency of European lactase persistence allele (T-13910) in medieval central europe.

Science.gov (United States)

Krüttli, Annina; Bouwman, Abigail; Akgül, Gülfirde; Della Casa, Philippe; Rühli, Frank; Warinner, Christina

2014-01-01

Ruminant milk and dairy products are important food resources in many European, African, and Middle Eastern societies. These regions are also associated with derived genetic variants for lactase persistence. In mammals, lactase, the enzyme that hydrolyzes the milk sugar lactose, is normally down-regulated after weaning, but at least five human populations around the world have independently evolved mutations regulating the expression of the lactase-phlorizin-hydrolase gene. These mutations result in a dominant lactase persistence phenotype and continued lactase tolerance in adulthood. A single nucleotide polymorphism (SNP) at C/T-13910 is responsible for most lactase persistence in European populations, but when and where the T-13910 polymorphism originated and the evolutionary processes by which it rose to high frequency in Europe have been the subject of strong debate. A history of dairying is presumed to be a prerequisite, but archaeological evidence is lacking. In this study, DNA was extracted from the dentine of 36 individuals excavated at a medieval cemetery in Dalheim, Germany. Eighteen individuals were successfully genotyped for the C/T-13910 SNP by molecular cloning and sequencing, of which 13 (72%) exhibited a European lactase persistence genotype: 44% CT, 28% TT. Previous ancient DNA-based studies found that lactase persistence genotypes fall below detection levels in most regions of Neolithic Europe. Our research shows that by AD 1200, lactase persistence frequency had risen to over 70% in this community in western Central Europe. Given that lactase persistence genotype frequency in present-day Germany and Austria is estimated at 71-80%, our results suggest that genetic lactase persistence likely reached modern levels before the historic population declines associated with the Black Death, thus excluding plague-associated evolutionary forces in the rise of lactase persistence in this region. This new evidence sheds light on the dynamic evolutionary

Evidence of authentic DNA from Danish Viking Age skeletons untouched by humans for 1,000 years.

Directory of Open Access Journals (Sweden)

Linea Melchior

Full Text Available BACKGROUND: Given the relative abundance of modern human DNA and the inherent impossibility for incontestable proof of authenticity, results obtained on ancient human DNA have often been questioned. The widely accepted rules regarding ancient DNA work mainly affect laboratory procedures, however, pre-laboratory contamination occurring during excavation and archaeological-/anthropological handling of human remains as well as rapid degradation of authentic DNA after excavation are major obstacles. METHODOLOGY/PRINCIPAL FINDINGS: We avoided some of these obstacles by analyzing DNA from ten Viking Age subjects that at the time of sampling were untouched by humans for 1,000 years. We removed teeth from the subjects prior to handling by archaeologists and anthropologists using protective equipment. An additional tooth was removed after standard archaeological and anthropological handling. All pre-PCR work was carried out in a "clean- laboratory" dedicated solely to ancient DNA work. Mitochondrial DNA was extracted and overlapping fragments spanning the HVR-1 region as well as diagnostic sites in the coding region were PCR amplified, cloned and sequenced. Consistent results were obtained with the "unhandled" teeth and there was no indication of contamination, while the latter was the case with half of the "handled" teeth. The results allowed the unequivocal assignment of a specific haplotype to each of the subjects, all haplotypes being compatible in their character states with a phylogenetic tree drawn from present day European populations. Several of the haplotypes are either infrequent or have not been observed in modern Scandinavians. The observation of haplogroup I in the present study (<2% in modern Scandinavians supports our previous findings of a pronounced frequency of this haplogroup in Viking and Iron Age Danes. CONCLUSION: The present work provides further evidence that retrieval of ancient human DNA is a possible task provided adequate

Evidence of authentic DNA from Danish Viking Age skeletons untouched by humans for 1,000 years.

Science.gov (United States)

Melchior, Linea; Kivisild, Toomas; Lynnerup, Niels; Dissing, Jørgen

2008-05-28

Given the relative abundance of modern human DNA and the inherent impossibility for incontestable proof of authenticity, results obtained on ancient human DNA have often been questioned. The widely accepted rules regarding ancient DNA work mainly affect laboratory procedures, however, pre-laboratory contamination occurring during excavation and archaeological-/anthropological handling of human remains as well as rapid degradation of authentic DNA after excavation are major obstacles. We avoided some of these obstacles by analyzing DNA from ten Viking Age subjects that at the time of sampling were untouched by humans for 1,000 years. We removed teeth from the subjects prior to handling by archaeologists and anthropologists using protective equipment. An additional tooth was removed after standard archaeological and anthropological handling. All pre-PCR work was carried out in a "clean- laboratory" dedicated solely to ancient DNA work. Mitochondrial DNA was extracted and overlapping fragments spanning the HVR-1 region as well as diagnostic sites in the coding region were PCR amplified, cloned and sequenced. Consistent results were obtained with the "unhandled" teeth and there was no indication of contamination, while the latter was the case with half of the "handled" teeth. The results allowed the unequivocal assignment of a specific haplotype to each of the subjects, all haplotypes being compatible in their character states with a phylogenetic tree drawn from present day European populations. Several of the haplotypes are either infrequent or have not been observed in modern Scandinavians. The observation of haplogroup I in the present study (Viking and Iron Age Danes. The present work provides further evidence that retrieval of ancient human DNA is a possible task provided adequate precautions are taken and well-considered sampling is applied.

A novel SERRS sandwich-hybridization assay to detect specific DNA target.

Directory of Open Access Journals (Sweden)

Cécile Feuillie

Full Text Available In this study, we have applied Surface Enhanced Resonance Raman Scattering (SERRS technology to the specific detection of DNA. We present an innovative SERRS sandwich-hybridization assay that allows specific DNA detection without any enzymatic amplification, such as is the case with Polymerase Chain Reaction (PCR. In some substrates, such as ancient or processed remains, enzymatic amplification fails due to DNA alteration (degradation, chemical modification or to the presence of inhibitors. Consequently, the development of a non-enzymatic method, allowing specific DNA detection, could avoid long, expensive and inconclusive amplification trials. Here, we report the proof of concept of a SERRS sandwich-hybridization assay that leads to the detection of a specific chamois DNA. This SERRS assay reveals its potential as a non-enzymatic alternative technology to DNA amplification methods (particularly the PCR method with several applications for species detection. As the amount and type of damage highly depend on the preservation conditions, the present SERRS assay would enlarge the range of samples suitable for DNA analysis and ultimately would provide exciting new opportunities for the investigation of ancient DNA in the fields of evolutionary biology and molecular ecology, and of altered DNA in food frauds detection and forensics.

Differential Nuclear and Mitochondrial DNA Preservation in Post-Mortem Teeth with Implications for Forensic and Ancient DNA Studies

Science.gov (United States)

Higgins, Denice; Rohrlach, Adam B.; Kaidonis, John; Townsend, Grant; Austin, Jeremy J.

2015-01-01

Major advances in genetic analysis of skeletal remains have been made over the last decade, primarily due to improvements in post-DNA-extraction techniques. Despite this, a key challenge for DNA analysis of skeletal remains is the limited yield of DNA recovered from these poorly preserved samples. Enhanced DNA recovery by improved sampling and extraction techniques would allow further advancements. However, little is known about the post-mortem kinetics of DNA degradation and whether the rate of degradation varies between nuclear and mitochondrial DNA or across different skeletal tissues. This knowledge, along with information regarding ante-mortem DNA distribution within skeletal elements, would inform sampling protocols facilitating development of improved extraction processes. Here we present a combined genetic and histological examination of DNA content and rates of DNA degradation in the different tooth tissues of 150 human molars over short-medium post-mortem intervals. DNA was extracted from coronal dentine, root dentine, cementum and pulp of 114 teeth via a silica column method and the remaining 36 teeth were examined histologically. Real time quantification assays based on two nuclear DNA fragments (67 bp and 156 bp) and one mitochondrial DNA fragment (77 bp) showed nuclear and mitochondrial DNA degraded exponentially, but at different rates, depending on post-mortem interval and soil temperature. In contrast to previous studies, we identified differential survival of nuclear and mtDNA in different tooth tissues. Futhermore histological examination showed pulp and dentine were rapidly affected by loss of structural integrity, and pulp was completely destroyed in a relatively short time period. Conversely, cementum showed little structural change over the same time period. Finally, we confirm that targeted sampling of cementum from teeth buried for up to 16 months can provide a reliable source of nuclear DNA for STR-based genotyping using standard

Separation of americium (III) and strontium (II) using TEHDGA and 18-crown-6

Energy Technology Data Exchange (ETDEWEB)

Sinharoy, Prithwish; Khan, Pasupati Nath; Nair, Deepika; Jagasia, Poonam; Dhami, P.S.; Kaushik, C.P.; Banerjee, Kalyan [Bhabha Atomic Research Centre, Mumbai (India). Nuclear Recycle Group; Anitha, M. [Bhabha Atomic Research Centre, Mumbai (India). Rare Earth Development Section; Sharma, J.N. [Bhabha Atomic Research Centre, Mumbai (India). Process Development Div.

2017-06-01

This work describes extraction of Am(III) and Sr(II) together with tetra(2-ethylhexyl) diglycolamide (TEHDGA) and selective back-extraction of strontium with a strontium complexant, 18-crown-6, leading to their separation from each other. 0.3 M TEHDGA+5% isodecyl alcohol/n-dodecane was used to extract Am(III) and Sr(II) from 4 M nitric acid into organic phase with very high D (D{sub Am}=1000, D{sub Sr}=22) and 0.1 M 18-crown-6 dissolved in 4 M nitric acid is used for selective stripping of Sr(II) from loaded extract phase. Am(III) left in the extract phase was then stripped with 0.01 M nitric acid. Stripping of Sr(II) was found to increase with increase in 18-crown-6 concentration, at 0.1 M 18-crown-6 dissolved in 4 M nitric acid, 83% of the loaded strontium (D{sub Sr}=0.20) was back-extracted in a single contact while loss of Am(III) was 0.8% (D{sub Am}=122.45). Stoichiometry limit of 1:1 was observed between strontium and 18-crown-6. Strontium was precipitated and separated from the complexant by Na{sub 2}SO{sub 4} or Na{sub 2}CO{sub 3}. This process was tested with simulated solution of high level waste and found suitable for quantitative recovery of strontium with high purity.

Development of novel strontium containing bioactive glass based calcium phosphate cement.

Science.gov (United States)

D'Onofrio, A; Kent, N W; Shahdad, S A; Hill, R G

2016-06-01

The aim of this study was to investigate the effect on properties of increasing strontium substitution for calcium in bioactive glasses used as precursors for novel calcium phosphate cements. Glasses were produced by progressively substituting strontium for calcium. Cements were prepared by mixing the glass powder with Ca(H2PO4)2 powder with a 2.5% solution of Na2HPO4. Setting times and compressive strength were measured after 1h, 1 day, 7 days and 28 days immersion in Tris buffer solution. X-ray diffraction (XRD), Fourier transform infrared spectroscopy and radiopacity were measured and crystal morphology was assessed using scanning electron microscopy. A correlation between the phases formed, morphology of the crystallites, setting time and compressive strength were analyzed. Setting time increased proportionally with strontium substitution in the glass up to 25%, whereas for higher substitutions it decreased. Compressive strength showed a maximum value of 12.5MPa and was strongly influenced by the interlocking of the crystals and their morphology. XRD showed that the presence of strontium influenced the crystal phases formed. Octacalcium phosphate (Ca8H2(PO4)6·5H2O, OCP) was the main phase present after 1h and 1 day whereas after 28 days OCP was completely transformed to strontium-containing hydroxyapatite (SrxCa(10-x)(PO4)6(OH)2, SrHA). Radiopacity increased proportionally to strontium substitution in the glass. A novel method to develop a bone substitute forming in vitro SrHA as a final product by using a bioactive glass as a precursor was shown. These novel injectable bioactive glass cements are promising materials for dental and orthopedic applications. Further in vivo characterizations are being conducted. Copyright © 2016 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

Study of the separation of strontium from solutions which imitate natural waters of increased mineralization

International Nuclear Information System (INIS)

Golub, A.M.; Voitko, I.N.; Glushchenko, L.V.; Mitrofanova, O.G.; Zyryanova, N.P.

1976-01-01

It has been shown by experiments on synthetically prepared solutions that it is possible to separate strontium and calcium by carbonate precipitation from the larger part of the magnesium accompanying them in natural high mineral waters. In this way the residual content of strontium is reduced to a value of 40-50 mg/liter and, under conditions of removing CO 2 from the solution, to 5-10 mg/liter. The high ionic strength of the solution prevented a more complete precipitation of strontium. Magnesium may be isolated from the filtrate after precipitation of the calcium-strontium mixture. The possibility has been shown of isolating strontium from the mixture of carbonates by means of pyrolysis at 1100-1200 0 and the selective solution of SrO in hot water

Local structure and speciation of uranium in strontium orthosilicate: TRFS and EXAFS studies

International Nuclear Information System (INIS)

Gupta, Santosh K.; Thulasidas, S.K.; Natarajan, V.; Yadav, A.K.; Bhattacharya, D.

2015-01-01

TRFS is used to investigate the valence state and coordination behavior of uranium in strontium orthosilicate. From TRFS measurement it was observed that uranium exists as U(VI) in the form of UO 2 2+ in Sr 2 SiO 4 . Based on life time measurement and EXAFS studies it was inferred that uranyl is stabilized on both 9- and 10- coordinated strontium polyhedra. Majority of uranyl ion occupy relatively asymmetric site in strontium silicate most probably 9-coordinated Sr sites. (author)

Investigation of the elution by seawater of caesium and strontium from loaded clinoptilolite

International Nuclear Information System (INIS)

Harder, B.R.; Mitchell, I.H.; Smyth, M.J.

1985-07-01

Simple investigations of the elution of caesium and strontium from loaded clinoptilolite are described. The clinoptilolite was loaded to levels expected in the British Nuclear Fuels plc SIXEP plant and contacted with seawater at approx. 15 C. (The elution time was measured until about 99% of the caesium and strontium had been eluted.) It was found that 99% of the caesium was eluted in 35 hours but the strontium (with more variable results) took at least 400 hours for 99% elution. (author)

Isotopic strontium, carbon and oxygen study on neoproterozoic marbles from Sierra de Umango, Andean Foreland, Argentina

International Nuclear Information System (INIS)

Varela, R; Valencio, S.; Ramos, A; Sato, K; Gonzalez, P; Panarello, H; Roverano, D

2001-01-01

The Umango Hill (La Rioja Province, 29 o 00'S-68 o 40'W) is one of the mountain blocks of Sierras Pampeanas Occidentales (Caminos, 1979), bounded by thrust faults and surrounded by Upper Devonian to Tertiary marine and continental sedimentites. The exposed crystalline basement is composed of basic igneous rocks and a siliciclastic-limestone sequence, both affected by amphibolite facies metamorphic peak. In the southern area (Juchi creek), the metamorphic complex carries relics of granitic orthogneisses, with Rb/Sr and U/Pb dates of ∼1000 Ma (Varela et al., 1996). These ancient inliers were asigned to a Mesoproterozoic Grenville Orogenic Cycle. Granitic bodies, intrusives at different ages in the Metamorphic Complex, have also been distinguished. The most ancient is El Penon Granite, with 469±9 Ma Rb/Sr age (Varela et al., 2000) and 523±26 Ma U/Pb zircon age (unpublished data). In this way it is possible to point out broadly that the siliciclastic-limestone sequence belongs to the Neoproterozoic-Early Palaeozoic times. It was a platform cover over grenvillian cratonic basement. The metamorphism and deformation, we understand, took place in the Early Palaeozoic, related to the Pampean-Famatinian Orogenic Cycle. In this work, compositional and isotopic data of Strontium ( 87 Sr/ 86 Sr), Carbon (δ 13 Cv PDB ) and Oxygen (δ 18 Ov PDB ) of the marbles derived from the siliciclastic-limestone sequence are presented. The results are interpreted and correlated with the temporal variation curves of 87 Sr/ 86 Sr and δ 13 C from Neoproterozoic marine carbonates (Jacobsen and Kaufman, 1999) (au)

Separation of fission strontium from nuclear fuels by ammonium molybdatophosphate

International Nuclear Information System (INIS)

Hermann, A.

1984-01-01

The separation of fission strontium from solutions of prolonged cooled nuclear fuel has been performed using ammoniummolybdatophosphate (AMP) columns. The sorption mechanism of bivalent ions of AMP has been investigated by column and batch experiments. A pure ion exchange of Sr 2+ for two H + or NH 4 + ions has been established. Conditions for the sepasorption and elution of fission strontium and other fission products on AMP columns are described. (author)

DNA and bone structure preservation in medieval human skeletons.

Science.gov (United States)

Coulson-Thomas, Yvette M; Norton, Andrew L; Coulson-Thomas, Vivien J; Florencio-Silva, Rinaldo; Ali, Nadir; Elmrghni, Samir; Gil, Cristiane D; Sasso, Gisela R S; Dixon, Ronald A; Nader, Helena B

2015-06-01

Morphological and ultrastructural data from archaeological human bones are scarce, particularly data that have been correlated with information on the preservation of molecules such as DNA. Here we examine the bone structure of macroscopically well-preserved medieval human skeletons by transmission electron microscopy and immunohistochemistry, and the quantity and quality of DNA extracted from these skeletons. DNA technology has been increasingly used for analyzing physical evidence in archaeological forensics; however, the isolation of ancient DNA is difficult since it is highly degraded, extraction yields are low and the co-extraction of PCR inhibitors is a problem. We adapted and optimised a method that is frequently used for isolating DNA from modern samples, Chelex(®) 100 (Bio-Rad) extraction, for isolating DNA from archaeological human bones and teeth. The isolated DNA was analysed by real-time PCR using primers targeting the sex determining region on the Y chromosome (SRY) and STR typing using the AmpFlSTR(®) Identifiler PCR Amplification kit. Our results clearly show the preservation of bone matrix in medieval bones and the presence of intact osteocytes with well preserved encapsulated nuclei. In addition, we show how effective Chelex(®) 100 is for isolating ancient DNA from archaeological bones and teeth. This optimised method is suitable for STR typing using kits aimed specifically at degraded and difficult DNA templates since amplicons of up to 250bp were successfully amplified. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Interactive effects of vitamin D3 and strontium on performance, nutrient retention and bone mineral composition in laying hens.

Science.gov (United States)

Browning, Linda C; Cowieson, Aaron J

2015-03-30

Strontium is currently prescribed for patients with osteoporosis to increase bone density and reduce bone fractures but its relevance in animal nutrition is obscure. In order to investigate the effect of supplemental strontium and vitamin D3 on performance, egg quality and skeletal integrity in poultry a total of 108 laying hens, 99 weeks of age, were fed three levels of strontium (0, 500, 1000 mg kg(-1) ) and two levels of vitamin D3 (2500, 5,000 iu kg(-1)) over a 12-week period. There was an improvement (P < 0.05) in egg production and feed conversion efficiency with strontium at 500 mg kg(-1) and a significant increase in egg weight in those hens fed additional vitamin D3 . Supplemental strontium increased phosphorus, sodium and strontium retention in birds fed 2500 iu D3 kg(-1) but reduced phosphorus, sodium and strontium retention in birds fed 5000 iu D3 kg(-1), resulting in an interaction (P < 0.01) between strontium and vitamin D3 . Addition of 5000 iu D3 kg(-1) increased egg weight (P < 0.05); predominantly by increased albumen content (P < 0.05), whereas strontium supplementation reduced egg weight (P < 0.001). Similarly, 5000 iu kg(-1) D3 increased apparent metabolizable energy (P < 0.05); in contrast, strontium supplementation reduced (P < 0.05) apparent metabolizable energy. The addition of 500 mg kg(-1) strontium significantly improved egg production and feed efficiency; however, further investigation needs to be undertaken to refine the optimum level of strontium required to maximize hen performance. The interrelationship between strontium and vitamin D3 requires further exploratory study. © 2014 Society of Chemical Industry.

Hydrologic inferences from strontium isotopes in pore water from the unsaturated zone at Yucca Mountain, Nevada

International Nuclear Information System (INIS)

Marshall, B.D.; Futa, K.; Peterman, Z.E.

1997-01-01

Calcite is ubiquitous at Yucca Mountain, occurring in the soils and as fracture and cavity coatings within the volcanic tuff section. Strontium is a trace element in calcite, generally at the tens to hundreds of ppm level. Because calcite contains very little rubidium and the half-life of the 87 Rb parent is billions of years, the 87 Sr/ 86 Sr ratios of the calcite record the ratio in the water from which the calcite precipitated. Dissolution and reprecipitation does not alter these compositions so that, in the absence of other sources of strontium, one would expect the strontium ratios along a flow path to preserve variations inherited from strontium in the soil zone. Strontium isotope compositions of calcites from various settings in the Yucca Mountain region have contributed to the understanding of the unsaturated zone (UZ), especially in distinguishing unsaturated zone calcite from saturated zone calcite. Different populations of calcite have been compared, either to group them together or distinguish them from each other in terms of their strontium isotope compositions. Ground water and perched water have also been analyzed; this paper presents strontium isotope data obtained on pore water

Application of dicyclohexyl-18-crown-6 to selective extraction of radioactive strontium from waters

International Nuclear Information System (INIS)

Yakshin, V.V.; Myasoedov, B.F.; Vilkova, O.M.; Tuzova, A.M.; Fedorova, A.T.; Rodionova, I.M.

1989-01-01

Influence of various factors on strontium extraction in the system nitric acid-dicyclohexyl-18-crown-6 was studied to develop the technique for determining 89 Sr and 90 Sr content in natural waters and aqueous salt solutions. Conditions for selective strontium extraction from complex salt systems containing Ba, Cs, Ru, Ce and other radionuclides were found. It is shown that coefficient of strontium distribution is sufficiently higher, as compared to coefficients of Cs, Ru, Ce distribution. Extraction performance under chosen conditions enables to elevate sufficiently the distribution coefficient of these substances. The scheme of radiochemical analysis is given. Strontium content in natural waters and salt solutions was determined with the use of described radiochemical method

Investigation of aluminium-rich alloy system of aluminium-strontium-silicium

International Nuclear Information System (INIS)

Ganiev, I.N.; Vakhobov, A.B.; Dzhuraev, T.D.; Alidzhanov, F.N.

1976-01-01

An area of the solid solution based on aluminium was studied, and the surface was plotted of the liquidus adjoining the apex of the aluminium corner of the strontium-aluminium-silicon system. The investigation was carried out by microstructure and differential thermal analyses and by the measurement of the microhardness of the component phases. A combined solubility of silicon and strontium in aluminium was studied along three radial sections at Sr-to-Si ratios of 1/2, 1/1 and 2/1. The relationships of ''composition vs. Microhardness'', obtained in these sections, made it possible to define the boundaries of the phase regions in the aluminium corner of the strontium-aluminium-silicon system at 500 deg C. The greatest solubility is that along the Al-SrAl 2 Si 2 section at a Sr/Si ratio of 1/2. A further increase in the content of strontium brings about a drop in the solubility of silicon in solid aluminium. The projection of the liquidus surface of the strontium-aluminium-silicon system, rich in aluminium, includes four surfaces of primary crystallization: α-Al, SrAl 4 , SrAl 2 Si 2 and Si. The system comprises a section of Al-SrAl 2 Si 2 representing a quasibinary system of an eutectic type. The eutectic reaction takes place at a temperature of 640 deg C. The quasibinary Al-SrAl 2 Si 2 section divides the aluminium corner of the Sr-Al-Si system into two independent systems Al-SrAl 4 -SrAl 2 Si 2 and Al-Si-SrAl 2 Si 2 of an eutectic type

Effects of mineralogy on sorption of strontium and cesium onto Calico Hills Tuff

International Nuclear Information System (INIS)

Meyer, R.E.; Arnold, W.D.; Case, F.I.; O'Kelley, G.D.; Land, J.F.

1990-04-01

The sorption properties of tuff formations at the proposed site for the high-level nuclear waste repository at Yucca Mountain, Nevada, have been extensively studied. Sorption and desorption measurements were made of strontium and cesium onto clinoptilolite and Calico Hills Tuff. The object was to see whether there was a correlation between sorption of strontium and cesium onto Calico Hills Tuff and the sorption of strontium and cesium onto clinoptilolite based on the content of clinoptilolite in the Calico Hills Tuff. 13 refs., 10 figs., 6 tabs

Study on the Key Technology of High Purity Strontium Titanate Powder Synthesized from Oxalic Acid Co-sediment Precipitation

Science.gov (United States)

Bi, Xiaoguo; Dong, Yingnan; Li, Yingjie; Niu, Wei; Tang, Jian; Ding, Shuang; Li, Meiyang

2017-09-01

Oxalate coprecipitation is applied in this paper, high purity titanium tetrachloride, and after the purification of strontium chloride, match with a certain concentration of solution, oxalate and strontium chloride and titanium tetrachloride in 1.005:1.000 make strontium titanium mixture ratio, slowly under 60°C to join in oxalic acid solution, aging around 4 h, get oxygen titanium strontium oxalate (SrTiO(C2O4)2 • 4H2 ) precipitation, after washing, drying and other process made oxygen titanium strontium oxalate powder.

Urinary strontium and the risk of breast cancer: A case-control study in Guangzhou, China

Energy Technology Data Exchange (ETDEWEB)

Chen, Li-Juan [The School of Public Health, Sun Yat-sen University, 74 Zhongshan 2nd Rd, Guangzhou 510080 (China); Tang, Lu-Ying [The School of Public Health, Sun Yat-sen University, 74 Zhongshan 2nd Rd, Guangzhou 510080 (China); The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou 510630 (China); He, Jian-Rong [The School of Public Health, Sun Yat-sen University, 74 Zhongshan 2nd Rd, Guangzhou 510080 (China); Guangzhou Women and Children' s Medical Center, Guangzhou 510623 (China); Su, Yi; Cen, Yu-Ling; Yu, Dan-Dan [The School of Public Health, Sun Yat-sen University, 74 Zhongshan 2nd Rd, Guangzhou 510080 (China); Wu, Bang-Hua [The Guangdong Prevention and Treatment Center for Occupational Diseases, Guangzhou 510300 (China); Lin, Ying [The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080 (China); Chen, Wei-Qing [The School of Public Health, Sun Yat-sen University, 74 Zhongshan 2nd Rd, Guangzhou 510080 (China); Song, Er-Wei, E-mail: songerwei02@yahoo.com.cn [The Second Affiliated Hospital, Sun Yat-sen University, 107 Yanjiang West, Guangzhou 510120 (China); Ren, Ze-Fang, E-mail: renzef@mail.sysu.edu.cn [The School of Public Health, Sun Yat-sen University, 74 Zhongshan 2nd Rd, Guangzhou 510080 (China)

2012-01-15

Strontium has been widely used in industries like electronic and pharmacy. It has a carcinogenic potential, however, and no study has been conducted to evaluate its effects on cancer risk. The aim of this study was to explore the possible association between strontium and breast cancer risk in a case-control study including 240 incident invasive breast cancer patients and 246 age-matched controls. We measured the urinary concentrations of strontium by inductively coupled plasma mass spectrometry, and conducted face-to-face interviews to obtain information on potential breast cancer risk factors. Multivariable analysis was used to estimate the association. Creatinine-adjusted levels [median (25th, 75th) {mu}g/g] of strontium were 155.59 (99.05, 230.70) in the breast cancer patients and 119.62 (81.97, 163.76) in the controls. Women in the highest tertile of strontium showed 124% increased risk of breast cancer, when compared with those in the lowest tertile after adjustment for the potential risk factors [OR (95% CI): 2.24 (1.42-3.81)]. This association was particularly strong for HER2 positive breast cancer [OR (95% CI): 10.92 (3.53-33.77)], and only occurred among premenopausal women. These results suggest a potential role of strontium in the development of breast cancer and urge further studies on the environmental contamination and the physiological and pathological mechanisms of strontium.

Distribution of strontium in DB18K6 and DTBDB18K6 systems

International Nuclear Information System (INIS)

Usarov, Z.O.; Khujaev, S.

2007-01-01

Distributions of strontium in DB18K6 and DTBDB18K6 crown-ethers in chloroform were investigated for extraction of strontium from water solutions of nitric acid. Nitrate solutions with various pH were considered. In both crown-ethers the most extraction of strontium was observed for the moderate pH values. Equilibrium of extraction process is reached for comparatively short time and is occurred to be 20 min (authors)

Strontium-90 and cesium-137 in sea sediments (from May 1984 to Sep 1984)

International Nuclear Information System (INIS)

1984-01-01

Strontium-90 and cesium-137 monitoring results are presented for sea sediment samples of 12 sampling points located all over Japan from Tomari, Hokkaido to Kinnakagusuku Bay, Okinawa. The samples were collected by considering of enough sea water depth, no significant sedimental movement and sediment characteristics, and by employing a conventional sampling device. Approximately 4 kg-wet sample was dried and was passed through a 20 cm mesh sieve. After adding of strontium and cesium carriers, strontium-90 and cesium-137 were leached with a hot hydrochloric acid solution. The leachate was treated by ion exchange and coprecipitation to concentrate and isolate strontium-90 or cesium-137. Radiation counting was carried out by employing a low background beta counter usually for 60 minutes for the samples of strontium carbonate or cesium chloroplatinate. Determined strontium-90 contents in sea sediment were distributed from 0 +- 2.7 pCi/kg-dry (Mutsu Bay, Aomori, Yamaguchi Bay, Yamaguchi) to 14 +- 3.2 pCi/kg-dry (Mutsu Bay), and those of cesium-137 were from 9 +- 3.5 pCi/kg-dry (Mutsu Bay) to 250 +- 9 pCi/kg-dry (Off-Niigata Port, Niigata). Local variation of the contents of these radionuclides was very large, and for seasonal variation, it was also found large for the both nuclides content in the Mutsu Bay samples of May, 1984 and August 1984, as for strontium-90, 0 +- 2.7 pCi/kg and 14 +- 3.2 pCi/kg, for cesium-137, 9 +- 3.5 pCi/kg and 200 +- 8 pCi/kg, respectively. (Takagi, S.)

Strontium ranelate improved tooth anchorage and reduced root resorption in orthodontic treatment of rats.

Science.gov (United States)

Kirschneck, Christian; Wolf, Michael; Reicheneder, Claudia; Wahlmann, Ulrich; Proff, Peter; Roemer, Piero

2014-12-05

The anchorage mechanisms currently used in orthodontic treatment have various disadvantages. The objective of this study was to determine the applicability of the osteoporosis medication strontium ranelate in pharmacologically induced orthodontic tooth anchorage. In 48 male Wistar rats, a constant orthodontic force of 0.25 N was reciprocally applied to the upper first molar and the incisors by means of a Sentalloy(®) closed coil spring for two to four weeks. 50% of the animals received strontium ranelate at a daily oral dosage of 900 mg per kilogramme of body weight. Bioavailability was determined by blood analyses. The extent of tooth movement was measured both optometrically and cephalometrically (CBCT). Relative alveolar gene expression of osteoclastic markers and OPG-RANKL was assessed by qRT-PCR and root resorption area and osteoclastic activity were determined in TRAP-stained histologic sections of the alveolar process. Compared to controls, the animals treated with strontium ranelate showed up to 40% less tooth movement after four weeks of orthodontic treatment. Gene expression and histologic analyses showed significantly less osteoclastic activity and a significantly smaller root resorption area. Blood analyses confirmed sufficient bioavailability of strontium ranelate. Because of its pharmacologic effects on bone metabolism, strontium ranelate significantly reduced tooth movement and root resorption in orthodontic treatment of rats. Strontium ranelate may be a viable agent for inducing tooth anchorage and reducing undesired root resorption in orthodontic treatment. Patients under medication of strontium ranelate have to expect prolonged orthodontic treatment times. Copyright © 2014 Elsevier B.V. All rights reserved.

Stable strontium isotopic ratios from archaeological organic remains from the Thorsberg peat bog

DEFF Research Database (Denmark)

Nosch, Marie-Louise Bech; von Carnap-Bornheim, Claus; Grupe, Gisela

2007-01-01

Pilot study analysing stable strontium isotopic ratios from Iron Age textile and leather finds from the Thorsberg peat bog.......Pilot study analysing stable strontium isotopic ratios from Iron Age textile and leather finds from the Thorsberg peat bog....

Strontium-90 and cesium-137 in soil (from May 1985 to Jul. 1985)

International Nuclear Information System (INIS)

1985-01-01

This report is aimed at listing measurements of strontium-90 and cesium-137 in soil made at eight places across Japan during the period from May to July in 1985. Collection and pretreatment methods are described for samples of rain and dry fallout, airborne dust, service water and freshwater, soil, sea water, sea sediments, total diet, rice, milk, vegetables, tea, as well as fish, shellfish and seaweeds. The methods for the preparation of these samples for analysis are also outlined. Sample solutions were neutralized with sodium hydroxide, and the precipitate of strontium and calcium carbonates was separated after sodium carbonate was added. The supernatant solution was retained for cesium-137 determination. After being precipitated as oxalates, strontium and calcium were separated by successive fuming nitric acid separations. For the determination of stable strontium, calcium and potassium, soil and sediment were treated with sodium hydroxide and hydrochloric acid for extraction while other samples were ashed and digested. Calcium, separated as oxalate, was determined by titration while stable strontium and potassium were determined by atomic absorption and flame emission spectroscopy, respectively. Couting for activity was carried out using low background beta counters normally for 60 min. (Nogami, K.)

Studies of cesium and strontium migration in unconsolidated Canadian geological materials

International Nuclear Information System (INIS)

Gillham, R.W.; Lindsay, L.E.; Reynolds, W.D.; Kewen, T.J.; Cherry, J.A.; Reddy, M.R.

1981-06-01

Distribution coefficients (Ksub(d)) were measured for cesium and strontium in 16 samples of Canadian unconsolidated geological materials. The samples were collected to cover a wide range of grain size, clay-mineral composition, cation exchange capacity and carbonate mineral content. Distribution coefficients ranged between 10 2 and 2.0 x 10 4 ml/g for cesium and between 2.5 and 10 2 ml/g for strontium, indicating that most unconsolidated geological materials have a substantial ability to retard the migration of cesium, while strontium could generally be expected to be somewhat more mobile. The measured K values were not significantly correlated with the measured soil properties, but appeared to be significantly affected by the background concentration of stable isotopes of the respective radionuclides

Innovation in metrology: fast automated radiochemical separation and measurement for strontium 89 and 90

Energy Technology Data Exchange (ETDEWEB)

Augeray, C.; Galliez, K.; Mouton, M.; Tarlette, L.; Loyen, J.; Fayolle, C.; Gleizes, M. [Institut de Radioprotection et de Surete Nucleaire - IRSN (France)

2014-07-01

Measuring radioactivity in the food and for radiological monitoring of the environment around Nuclear Facilities or mining sites requires the quantification of the radioactive isotopes present in the different compartments (liquids or solids), especially of the beta emitters. Strontium 89 and 90, both pure beta emitters are radioactive isotopes of interest. Because of their toxicity and the similarity of their chemical and physical behavior with calcium, these elements may be found through the food chain. After the Fukushima accident, the necessity of quantifying quickly radioactive isotopes such as strontium 89 and 90 appeared. The technique we are going to present concerns the determination of the activity concentration of strontium 89 and 90 in water, according to the {sup 89}Sr/{sup 90}Sr ratio. It consists of two stages: the chemical separation by ionic chromatography and the measurement of the activity concentration of strontium 89 and 90 by Cerenkov Effect. The automated separation has been developed and allows isolating the isotopes of strontium in particular the radioactive ones: strontium 89 and 90. The separation can be done within one hour. It was realized from the adaptation of existing analytical chemistry equipments with on-line couplings. The protocol of separation is based on the use of ions exchange columns of Ionic chromatography not as a separation and measurement technique of the cation but only as a separation technique. At the release time of the ion to be quantified, a fraction collector allows its recovery. The test portion is then analyzed with a liquid scintillation counter (LSC). The activity concentration is measured by Cerenkov Effect on a quenched sample. The quenching is realized by applying a thin colored film on the sample vial. This color quench is used to make strontium 90 counts disappear on the LS spectrum. This way, only yttrium 90 ingrowth and strontium 89 decay are measured (E{sup 90}Sr < E{sup 89}Sr < E{sup 90}Y

Review and evaluation of extractants for strontium removal using magnetically assisted chemical separation

International Nuclear Information System (INIS)

Bauer, C.B.; Rogers, R.D.

1995-11-01

A literature review on extractants for strontium removal was initially performed at Northern Illinois University to assess their potential in magnetically assisted chemical separation. A series of potential strontium extractants was systematically evaluated there using radioanalytical methods. Initial experiments were designed to test the uptake of strontium from nitric acid using several samples of magnetic extractant particles that were coated with various crown ether ligands. High partition coefficient (K d ) values for stimulant tank waste were obtained. Further studies demonstrated that the large partitioning was due to uncoated particles

Review and evaluation of extractants for strontium removal using magnetically assisted chemical separation

Energy Technology Data Exchange (ETDEWEB)

Bauer, C.B.; Rogers, R.D. [Northern Illinois Univ., De Kalb, IL (United States). Dept. of Chemistry; Nunez, L.; Ziemer, M.D.; Pleune, T.T.; Vandegrift, G.F. [Argonne National Lab., IL (United States)

1995-11-01

A literature review on extractants for strontium removal was initially performed at Northern Illinois University to assess their potential in magnetically assisted chemical separation. A series of potential strontium extractants was systematically evaluated there using radioanalytical methods. Initial experiments were designed to test the uptake of strontium from nitric acid using several samples of magnetic extractant particles that were coated with various crown ether ligands. High partition coefficient (K{sub d}) values for stimulant tank waste were obtained. Further studies demonstrated that the large partitioning was due to uncoated particles.

Spectrographic determination of strontium in yttrium-90 solutions

International Nuclear Information System (INIS)

Roca, M.; Capdevila, C.

1970-01-01

The copper spark method has been used for determining strontium in the concentration range 1-100 g/ml in yttrium-90 solutions containing 0,5 % or thereabouts of ammonium citrate. The influence of the citric acid as well as the ammonium citrate with regard to 2N HCL solutions has been studied: the citric acid enhances the line intensities of strontium. The employment of either barium or lanthanum as reference element compensates for this enhancement. Because of the increase in sensitivity mentioned above, the study of influence of the citric acid has been extended and several impurities usually determined in radioisotope solutions have been considered. (Author) 4 refs

Rapid method for the radioactive strontium determination in natural samples; Brza metoda za odredjivanje radioaktivnog stroncija u prirodnim uzorcima

Energy Technology Data Exchange (ETDEWEB)

Grahek, Z; Kosutic, K; Lulic, S [Rudjer Boskovic Institute, Zagreb (Croatia)

1997-12-31

Radioactive strontium isotopes belong to the group of isotopes that are very dangerous for human health. Therefore radioactive strontium is regularly determined in natural samples. When determining strontium isotopes in natural samples, it is necessary to isolate strontium from the sample because strontium isotopes are pure {beta}-emitters. As natural samples contain much more calcium and sodium than strontium it is necessary to isolate a small quantity of strontium from large sample with simultaneous separation of calcium and other interfering elements. For this purposes an elegant method based on ion exchange chromatography has been developed. Namely, examinations with model system have shown that strontium may be separated from calcium on the column filled with anion exchanger and the mixture of the methanol and nitric acid as eluent. It was also shown that yttrium does not separate from strontium but elutes almost simultaneously with it. Yttrium may be separated from strontium on the column filled with cation exchanger DOWEX 50X8 and nitric acid as eluent. According to the above examinations, the procedure of isolation of strontium and yttrium from natural sample has been created (on assumption that {sup 90}Sr and {sup 90}Y in secular equilibrium in sample). Strontium and yttrium have been isolated from natural sample (standard IAEA A-7) on the column filled with the exchanger AMBERLITE CG-400 and the mixture of methanol and nitric acid as eluent. Strontium and yttrium have been separated on the column with cation exchanger. {sup 90}Sr has been determined through {sup 90}Y by counting the solid yttrium oxalate immediately upon isolation and separation from strontium. {sup 90}Sr has also been determined by counting {sup 90}Sr-{sup 90}Y in secular equilibrium after 15 days. The obtained results of determination of {sup 90}Sr through {sup 90}Y and through secular equilibrium {sup 90}Sr-{sup 90}Y correspond to the declared values of standard. (author). 2 figs., 1

Melanesian mtDNA complexity.

Directory of Open Access Journals (Sweden)

Jonathan S Friedlaender

Full Text Available Melanesian populations are known for their diversity, but it has been hard to grasp the pattern of the variation or its underlying dynamic. Using 1,223 mitochondrial DNA (mtDNA sequences from hypervariable regions 1 and 2 (HVR1 and HVR2 from 32 populations, we found the among-group variation is structured by island, island size, and also by language affiliation. The more isolated inland Papuan-speaking groups on the largest islands have the greatest distinctions, while shore dwelling populations are considerably less diverse (at the same time, within-group haplotype diversity is less in the most isolated groups. Persistent differences between shore and inland groups in effective population sizes and marital migration rates probably cause these differences. We also add 16 whole sequences to the Melanesian mtDNA phylogenies. We identify the likely origins of a number of the haplogroups and ancient branches in specific islands, point to some ancient mtDNA connections between Near Oceania and Australia, and show additional Holocene connections between Island Southeast Asia/Taiwan and Island Melanesia with branches of haplogroup E. Coalescence estimates based on synonymous transitions in the coding region suggest an initial settlement and expansion in the region at approximately 30-50,000 years before present (YBP, and a second important expansion from Island Southeast Asia/Taiwan during the interval approximately 3,500-8,000 YBP. However, there are some important variance components in molecular dating that have been overlooked, and the specific nature of ancestral (maternal Austronesian influence in this region remains unresolved.

Regulation of strontium migration and translocation in chemical reclamation of acid soils

International Nuclear Information System (INIS)

Velichko, V.A.; Okonskij, A.I.; Shestakov, E.I.; Panov, N.P.

1993-01-01

Results of chemical testing are presented of the local reclamants (ashes of various deposits and ferrochromium plant slags) to study the possibilities of their use for chemical soil reclamation. Attention was paid to the investigation of pollutant (strontium) behaviour in the reclamant-acid soil-plant-ground water system. Tracer method was used, 85 Sr was applied as a label. Prospects of zeolite application to control the strontium behaviour following the reclamant introduction into soil were considered. It was shown that zeolite application permitted to regulate strontium behaviour in the reclamant-soil-plant-ground water system. At that the modified zeolites possessing high Sr selectivity are recommended for application

Strontium-90 accumulation in fowl and its migration into egg following chromic intake with forage

International Nuclear Information System (INIS)

Koldaeva, K.A.; Sarapul'tsev, I.A.

1975-01-01

Accumulation of strontium-90 in different organs of hens and its transfer ot eggs have been studied at chronic feeding with the isotope. The feed consisted of potato and wheat grown on plots artificially contaminated with strontium-90. The duration of the experiment is 30 days during which the hens lay 35 eggs. Strontium-90 and calcium are determined in the femur, shoulder, breastbone, skull, rib, vertebrae, and muscles. Determination errors do not exceed 10 and 5% for the isotope and calcium respectively. Concentration of stronium-90 and calcium in different bones and in muscles of laying hens and roosters after a month's feeding with the isotope presented. The isotope concentration in bones of hens 3 to 4 times higher than in bones of roosters while the muscle concentration is similar in both cases. The higher content of strontium-90 per g of bone tissue calcium in hens can be explained by a higher level of calcium metabolism during the laying period. Data on strontium-90 and calcium concentration in eggs are also presented. The bulk of the isotope accumulates in the eggshell (96.4%). One egg contains an average of 31% of the daily strontium intake

Marking pike fry otoliths with alizarin complexone and strontium : an evaluation of methods

DEFF Research Database (Denmark)

Skov, Christian; Grønkjær, P.; Nielsen, C.

2001-01-01

Laboratory experiments demonstrated that both alizarin complexone and strontium are useful in mass marking of pike Esox lucius fry otoliths. Visual detection of alizarin complexone marks was considered more reliable than the quantitative analysis of strontium for differentiating marked and unmarked...

Ancient Greek with Thrasymachus: A Web Site for Learning Ancient Greek.

Science.gov (United States)

Barker, Alison

2001-01-01

Discusses a project that was begun as an attempt by two teachers of Ancient Greek to provide supplementary materials to accompany "Thrasymachus," a first-year textbook for learning ancient Greek. Provides a brief history and description of the project, the format of each chapter, a chronology for completion of materials for each chapter in the…

Classification of ancient mammal individuals using dental pulp MALDI-TOF MS peptide profiling.

Directory of Open Access Journals (Sweden)

Thi-Nguyen-Ny Tran

Full Text Available BACKGROUND: The classification of ancient animal corpses at the species level remains a challenging task for forensic scientists and anthropologists. Severe damage and mixed, tiny pieces originating from several skeletons may render morphological classification virtually impossible. Standard approaches are based on sequencing mitochondrial and nuclear targets. METHODOLOGY/PRINCIPAL FINDINGS: We present a method that can accurately classify mammalian species using dental pulp and mass spectrometry peptide profiling. Our work was organized into three successive steps. First, after extracting proteins from the dental pulp collected from 37 modern individuals representing 13 mammalian species, trypsin-digested peptides were used for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis. The resulting peptide profiles accurately classified every individual at the species level in agreement with parallel cytochrome b gene sequencing gold standard. Second, using a 279-modern spectrum database, we blindly classified 33 of 37 teeth collected in 37 modern individuals (89.1%. Third, we classified 10 of 18 teeth (56% collected in 15 ancient individuals representing five mammal species including human, from five burial sites dating back 8,500 years. Further comparison with an upgraded database comprising ancient specimen profiles yielded 100% classification in ancient teeth. Peptide sequencing yield 4 and 16 different non-keratin proteins including collagen (alpha-1 type I and alpha-2 type I in human ancient and modern dental pulp, respectively. CONCLUSIONS/SIGNIFICANCE: Mass spectrometry peptide profiling of the dental pulp is a new approach that can be added to the arsenal of species classification tools for forensics and anthropology as a complementary method to DNA sequencing. The dental pulp is a new source for collagen and other proteins for the species classification of modern and ancient mammal individuals.

Classification of Ancient Mammal Individuals Using Dental Pulp MALDI-TOF MS Peptide Profiling

Science.gov (United States)

Tran, Thi-Nguyen-Ny; Aboudharam, Gérard; Gardeisen, Armelle; Davoust, Bernard; Bocquet-Appel, Jean-Pierre; Flaudrops, Christophe; Belghazi, Maya; Raoult, Didier; Drancourt, Michel

2011-01-01

Background The classification of ancient animal corpses at the species level remains a challenging task for forensic scientists and anthropologists. Severe damage and mixed, tiny pieces originating from several skeletons may render morphological classification virtually impossible. Standard approaches are based on sequencing mitochondrial and nuclear targets. Methodology/Principal Findings We present a method that can accurately classify mammalian species using dental pulp and mass spectrometry peptide profiling. Our work was organized into three successive steps. First, after extracting proteins from the dental pulp collected from 37 modern individuals representing 13 mammalian species, trypsin-digested peptides were used for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis. The resulting peptide profiles accurately classified every individual at the species level in agreement with parallel cytochrome b gene sequencing gold standard. Second, using a 279–modern spectrum database, we blindly classified 33 of 37 teeth collected in 37 modern individuals (89.1%). Third, we classified 10 of 18 teeth (56%) collected in 15 ancient individuals representing five mammal species including human, from five burial sites dating back 8,500 years. Further comparison with an upgraded database comprising ancient specimen profiles yielded 100% classification in ancient teeth. Peptide sequencing yield 4 and 16 different non-keratin proteins including collagen (alpha-1 type I and alpha-2 type I) in human ancient and modern dental pulp, respectively. Conclusions/Significance Mass spectrometry peptide profiling of the dental pulp is a new approach that can be added to the arsenal of species classification tools for forensics and anthropology as a complementary method to DNA sequencing. The dental pulp is a new source for collagen and other proteins for the species classification of modern and ancient mammal individuals. PMID:21364886

Strontium Removal: Full-Scale Ohio Demonstrations

Science.gov (United States)

The objectives of this presentation are to present a brief overview of past bench-scale research to evaluate the impact lime softening on strontium removal from drinking water and present full-scale drinking water treatment studies to impact of lime softening and ion exchange sof...

Bulgarian regional patterns of contamination by global fallout (strontium 90)

International Nuclear Information System (INIS)

Boyadzhiev, A.; Shopov, N.; Simova, G.; Andreev, E.; Mikha lov, M.G.

1980-01-01

For selected districts in the country, mean annual atmospheric precipitation rates were related to strontium-90 contents in milk over the period 1970-1977. Strontium-90 in milk was determined by the method of Popov, using Va-Z-310 counters for activity measurements. The impact of annual precipitation means was examined by monofactorial spread analysis, with sites distributed into three groups according to precipitation rates observed over longer time periods: up to 650 l/m 2 from 650 to 750 l/m 2 ; and above 750 L/M 2 . Values of coefficient F were estimated, representing the ratio of group to random spreads. These figures were compared with critical values in Student's tables for 0.05 significance level. The F data indicated a definite alternative relationship to exist between strontium-90 amounts in mils and annual precipitation rates, which is prognostically meaningful from the strandpoint of radiological protection of the population

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA

DEFF Research Database (Denmark)

Boessenkool, Sanne; Epp, Laura S.; Haile, James Seymour

2012-01-01

the amplification of contaminant sequences to such an extent that retrieval of the endogenous DNA is severely restricted. The application of blocking primers is a promising tool to avoid this bias and can greatly enhance the quantity and the diversity of the endogenous DNA sequences that are amplified....

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data

Directory of Open Access Journals (Sweden)

Heike H. Zimmermann

2017-10-01

Full Text Available Ecosystem boundaries, such as the Arctic-Boreal treeline, are strongly coupled with climate and were spatially highly dynamic during past glacial-interglacial cycles. Only a few studies cover vegetation changes since the last interglacial, as most of the former landscapes are inundated and difficult to access. Using pollen analysis and sedimentary ancient DNA (sedaDNA metabarcoding, we reveal vegetation changes on Bol’shoy Lyakhovsky Island since the last interglacial from permafrost sediments. Last interglacial samples depict high levels of floral diversity with the presence of trees (Larix, Picea, Populus and shrubs (Alnus, Betula, Ribes, Cornus, Saliceae on the currently treeless island. After the Last Glacial Maximum, Larix re-colonised the island but disappeared along with most shrub taxa. This was probably caused by Holocene sea-level rise, which led to increased oceanic conditions on the island. Additionally, we applied two newly developed larch-specific chloroplast markers to evaluate their potential for tracking past population dynamics from environmental samples. The novel markers were successfully re-sequenced and exhibited two variants of each marker in last interglacial samples. SedaDNA can track vegetation changes as well as genetic changes across geographic space through time and can improve our understanding of past processes that shape modern patterns.

Coherent normalization of finger strontium XRF measurements: feasibility and limitations

Energy Technology Data Exchange (ETDEWEB)

Zamburlini, M; Pejovic-Milic, A; Chettle, D R [Medical Physics and Applied Radiation Sciences, McMaster University, Hamilton, L8S 4K1 (Canada)

2008-08-07

A non-invasive in vivo x-ray fluorescence (XRF) method of measuring bone strontium concentrations has previously been reported as a potential diagnostic tool able to detect strontium concentration in the finger and ankle bones. The feasibility of coherent normalization for {sup 125}I-source-based finger bone strontium x-ray fluorescence (XRF) measurements is assessed here by theoretical considerations and Monte Carlo simulations. Normalization would have several advantages, among which are the correction for the signal attenuation by the overlying soft tissue, and intersubject variability in the bone size and shape. The coherent normalization of bone strontium XRF measurements presents several challenges dictated by the behaviour of the coherent cross section and mass attenuation coefficient at the energies involved. It was found that the coherent normalization alone with either 22.1 keV or 35.5 keV photons was not successful in correcting for the overlying soft tissue attenuation. However, it was found that the coherent peak at 35.5 keV was able to correct effectively for variability in the finger bone size between people. Thus, it is suggested that, if the overlying soft tissue thickness can be obtained by means of an independent measurement, the 35.5 keV peak can be used to correct for the bone size, with an overall accuracy of the normalization process of better than 10%. (note)

Comparison of two Neolithic mtDNA haplotypes from a Czech excavation site with the results of mitochondrial DNA studies on European Neolithic and Mesolithic individuals

Czech Academy of Sciences Publication Activity Database

Votrubová, J.; Emmerová, B.; Brzobohatá, Hana; Šumberová, Radka; Vaněk, D.

2017-01-01

Roč. 6, December (2017), „e125”-„e128” ISSN 1875-1768 R&D Projects: GA ČR GB14-36938G Institutional support: RVO:67985912 Keywords : ancient DNA * mtDNA * sequencing * haplotype * haplogroup Subject RIV: AC - Archeology, Anthropology, Ethnology OBOR OECD: Archaeology http://www.fsigeneticssup.com/article/S1875-1768(17)30162-2/pdf

Strontium concentration in the Baltic Sea in 1974-1975 and its correlation with some hydrodynamic characteristics

International Nuclear Information System (INIS)

Stankajtis, A.K.; Styro, D.B.

1978-01-01

Strontium concentration data in the surface and deep layers of the Baltic Sea water are presented. Strontium concentration in the surface layer varies from 1.6 mg/1 to 2.2 mg/1 and that at a depth of 50 m - from 2.0 to 3.2 mg/1. Maximum concentration (4.5 mg/1) is at a depth of 440 m. Strontium concentration data are correlated with some hydrometeorological parameters (wind velocity and direction, water temperature, salinity). It has been indicated that water mass transfer in the Baltic Sea may be traced using the data on strontium concentration variations

Growth and characterization of magnesium chloride and lanthanum chloride doped strontium tartrate crystals - gel method

International Nuclear Information System (INIS)

Kalaiarasi, S.; Jaikumar, D.

2014-01-01

Growth of single crystals of doped strontium tartrate by controlled diffusion of strontium chloride into the silica gel charged with tartaric acid at room temperature is narrated. In this study, we synthesized magnesium chloride (5% and 10%) doped strontium tartrate crystals and Lanthanum chloride (5%, 10% and 15%) doped strontium tartrate crystals are grown. The crystal structure of the compound crystals was confirmed by single crystal X-ray diffraction. The Fourier transform infrared spectrum of pure and doped crystals are recorded and analyzed. The UV-Vis-NIR spectrum analysis reveals that the optical study of the grown crystals. The second harmonic generation efficiency was measured by using Kurtz powder technique with Nd:YAG laser of wavelength 1064 nm. (author)

Recovery and separation of rare-earth elements, barium, and strontium from bastnasite with sulfuric acid

International Nuclear Information System (INIS)

Eisele, J.A.; Bauer, D.J.

1974-01-01

A bench-scale investigation was made of a concentrated H 2 SO 4 reaction for recovering and separating rare earth elements, barium, and strontium from a bastnaesite ore and byproduct. Barium and strontium were dissolved in the concentrated acid and precipitated as a mixed product by water dilution. Separation of strontium from barium was effected by reaction with Na 2 CO 3 solution, followed by a dilute acid leach of the SrCO 3 formed. After removing the barium and strontium from bastnaesite ore, the rare-earth elements were roasted to water-soluble sulfates. The rare earth sulfate solution was subsequently processed by solvent extraction to produce rare-earth oxides low in lead and magnesium. (U.S.)

ADSORPTION OF STRONTIUM IONS FROM WATER ON MODIFIED ACTIVATED CARBONS

Directory of Open Access Journals (Sweden)

Mihai Ciobanu

2016-12-01

Full Text Available Adsorption of strontium ions from aqueous solutions on active carbons CAN-7 and oxidized CAN-8 has been studied. It has been found that allure of the adsorption isotherms for both studied active carbons are practically identical. Studies have shown that the adsorption isotherms for strontium ions from aqueous solutions are well described by the Langmuir and Dubinin-Radushkevich equations, respectively. The surface heterogeneity of activated carbons CAN-7 and oxidized CAN-8 has been assessed by using Freundlich equation.

Application of empore TM strontium rad disks to the analysis of radiostrontium in environmental water samples

International Nuclear Information System (INIS)

Smith, L.L.; Seely, D.C.; Shannon, R.T.

1996-01-01

A solid phase extraction method for analyzing radioactive strontium in surface, ground, and drinking waters is presented. Strontium is simply isolated by pulling an acidified sample aliquot through an Empore TM strontium rad disk with a vacuum, and the disk is subsequently assayed for beta activity. The method is efficient, safe, reliable, and potentially field deployable. Sample preparation and counting source preparation may be condensed into a single procedure, thereby improving efficiency and eliminating many potential sources of laboratory error. Moreover, many of the hazardous chemicals associated with traditional strontium procedures are eliminated. Samples are easily batched, and a one-liter sample may be prepared with as little as 20 min of effort. For a one-liter aqueous sample, up to 3 mg of strontium can be retained by the disks. Chemical and radiometric interferences are discussed. (orig.)

Determination of lithium, rubidium and strontium in foodstuffs

International Nuclear Information System (INIS)

Evans, W.H.; Read, J.I.

1985-01-01

For the determination of total lithium, rubidium and strontium in foodstuffs the organic matter is destroyed by a wet-oxidation procedure. Both lithium and rubidium are measured by flame atomic-emission spectrophotometry, rubidium with the addition of a radiation buffer and strontium is measured by flame atomic-absorption spectrophotometry using the same radiation buffer. The optimum conditions for measurement are described and interferences noted. The accuracy of the method was assessed by measuring the recovery of these metals from foodstuff homogenates and values for standard reference materials are listed, for comparison with certified levels where these exist. From the results obtained standard deviations were calculated and derived limits of detection and confidence intervals are given. (author)

Determination of the thermal radiation effect on an optical strontium lattice clock; Bestimmung des Einflusses thermischer Strahlung auf eine optische Strontium-Gitteruhr

Energy Technology Data Exchange (ETDEWEB)

Middelmann, Thomas

2013-05-31

Optical clocks have the potential to be 100 times more accurate than current best cesium atomic clocks within a fraction of the averaging time. This corresponds to a fractional uncertainty of the clock frequency on the level of 10{sup -18} and requires highaccuracy knowledge of systematic frequency shifts, such that they can be avoided or corrected for. In strontium optical lattice clocks an ensemble of ultracold strontium atoms is confined in an optical lattice, to allow for spectroscopy of the reference transition 5s{sup 2} {sup 1}S{sub 0}-5s5p {sup 3}P{sub 0} in the Lamb-Dicke regime. The by far largest systematic frequency shift of the strontium clock transition is caused by its high sensitivity to blackbody radiation (BBR). The knowledge of the resulting frequency shift limited the achievable clock uncertainty to about 1 x 10{sup -16}. In this thesis for the first time an experimental approach was followed, to determine the sensitivity of the strontium clock transition to blackbody radiation. At an environmental temperature of 300 K the resulting frequency shift corresponds to 2.277 8(23) Hz. The achieved uncertainty contributes with 5 x 10{sup -18} to the fractional systematic uncertainty of the clock frequency. The determination is based on a precision measurement of the difference of static polarizabilities of the two clock states {Delta}{alpha}{sub dc} = {alpha}(5s5p {sup 3}P{sub 0})-{alpha}(5s{sup 2} {sup 1}S{sub 0}) = 4.078 73(11) x 10{sup -39} Cm{sup 2} /V. For this the de Stark shift of the clock transition has been measured in the accurately known electric field of a precision plate capacitor, which has been developed in this work. The attained static polarizability difference {Delta}{alpha}{sub dc} corresponds to the first term of a power series of the sensitivity to BBR. Higher orders are accumulated as dynamic part of the BBR shift. Which has been modelled using {Delta}{alpha}{sub dc} and experimental data for other atomic properties. To

800,000 year old mammoth DNA, modern elephant DNA or PCR artefact?

DEFF Research Database (Denmark)

Binladen, Jonas; Gilbert, M Thomas P; Willerslev, Eske

2007-01-01

Poulakakis and colleagues (Poulakakis et al. 2006: Biol. Lett. 2, 451-454), report the recovery of 'authentic' mammoth DNA from an 800,000-year-old fragment of bone excavated on the island of Crete. In light of results from other ancient DNA studies that indicate how DNA survival is unlikely...... in samples, which are recovered from warm environments and are relatively old (e.g. more than 100,000 years), these findings come as a great surprise. Here, we show that problems exist with the methodological approaches used in the study. First, the nested PCR technique as reported is nonsensical...... polymorphisms. Finally, we demonstrate using a simple BLAST search in GenBank that the claimed 'uniquely derived character state' for mammoths is in fact also found within modern elephants. Udgivelsesdato: 2007-Feb-22...

A Spatio-Temporal Analysis of Mitochondrial DNA Haplogroup I

Directory of Open Access Journals (Sweden)

Revesz Peter Z.

2016-01-01

Full Text Available The recent recovery of ancient DNA from a growing number of human samples shows that mitochondrial DNA haplogroup I was introduced to Europe after the end of the Last Glacial Maximum. This paper provides a spatio-temporal analysis of the various subhaplogroups of mitochondrial DNA I. The study suggests that haplogroup I diversified into haplogroups I1, I2’3, I4 and I5 at specific regions in Eurasia and then spread southward to Crete and Egypt.

Strontium-90 and cesium-137 in freshwater (from September, 1982, to December, 1982)

International Nuclear Information System (INIS)

1982-01-01

Strontium-90 and cesium-137 in fresh water measured at 4 locations across Japan from September to December, 1982, are given in pCi/l, respectively. The methods of the collection and pretreatment of samples, the preparation of samples for analysis, the separation of strontium-90 and cesium-137, and the counting are also described. The sample was passed through a cation exchange column. Strontium and cesium were eluted with hydrochloric acid from the cation exchange column. The sample solution prepared was neutralized with sodium hydroxide. After sodium carbonate was added, the precipitate of strontium and calcium carbonates was separated. The supernatant solution was retained for cesium-137 determination. After the radiochemical separation, the mounted precipitate was counted for activity using a low background beta counter normally for 60 min. The radioactivity ranged 0.08 to 0.22 pCi/l for Sr-90 and 0.003 to 0.020 pCi/l for Cs-137 in the freshwater. (J.P.N.)

Microwave-hydrothermal synthesis of barium strontium titanate nanoparticles

International Nuclear Information System (INIS)

Simoes, A.Z.; Moura, F.; Onofre, T.B.; Ramirez, M.A.; Varela, J.A.; Longo, E.

2010-01-01

Research highlights: → Barium strontium titanate nanoparticles were obtained by the Hydrothemal microwave technique (HTMW) → This is a genuine technique to obtain nanoparticles at low temperature and short times → Barium strontium titanate free of carbonates with tetragonal structure was grown at 130 o C. - Abstract: Hydrothermal-microwave method (HTMW) was used to synthesize crystalline barium strontium titanate (Ba 0.8 Sr 0.2 TiO 3 ) nanoparticles (BST) in the temperature range of 100-130 o C. The crystallization of BST with tetragonal structure was reached at all the synthesis temperatures along with the formation of BaCO 3 as a minor impurity at lower syntheses temperatures. Typical FT-IR spectra for tetragonal (BST) nanoparticles presented well defined bands, indicating a substantial short-range order in the system. TG-DTA analyses confirmed the presence of lattice OH- groups, commonly found in materials obtained by HTMW process. FE/SEM revealed that lower syntheses temperatures led to a morphology that consisted of uniform grains while higher syntheses temperature consisted of big grains isolated and embedded in a matrix of small grains. TEM has shown BST nanoparticles with diameters between 40 and 80 nm. These results show that the HTMW synthesis route is rapid, cost effective, and could serve as an alternative to obtain BST nanoparticles.

Resonant double photoionisation spectroscopy of strontium

Energy Technology Data Exchange (ETDEWEB)

Sokell, E; Grimm, M; Sheridan, P, E-mail: emma.sokell@ucd.i, E-mail: paul.sheridan@ucd.i [School of Physics, University College Dublin, Belfield, Dublin 4 (Ireland)

2009-11-01

Resonant triple-differential cross-section (TDCS) measurements on atomic strontium on the 4p {yields} 4d resonance are presented. All of these TDCS measurements display unexpected lobes at a mutual emission angle for the two electrons of 180{sup o}. Possible explanations for these lobes are explored.

Spontaneous reossification of the sella in transsphenoidal reoperation associated with strontium ranelate

Directory of Open Access Journals (Sweden)

Maria Mercedes Pineyro

2017-07-01

Full Text Available Spontaneous reossification of the sellar floor after transsphenoidal surgery has been rarely reported. Strontium ranelate, a divalent strontium salt, has been shown to increase bone formation, increasing osteoblast activity. We describe an unusual case of a young patient with Cushing’s disease who was treated with strontium ranelate for low bone mass who experienced spontaneous sellar reossification after transsphenoidal surgery. A 21-year-old male presented with Cushing’s features. His past medical history included delayed puberty diagnosed at 16 years, treated with testosterone for 3 years without further work-up. He was diagnosed with Cushing’s disease initially treated with transsphenoidal surgery, which was not curative. The patient did not come to follow-up visits for more than 1 year. He was prescribed strontium ranelate 2 g orally once daily for low bone mass by an outside endocrinologist, which he received for more than 1 year. Two years after first surgery he was reevaluated and persisted with active Cushing’s disease. Magnetic resonance image revealed a left 4 mm hypointense mass, with sphenoid sinus occupation by a hyperintense material. At repeated transsphenoidal surgery, sellar bone had a very hard consistency; surgery was complicated and the patient died. Sellar reossification negatively impacted surgery outcomes in this patient. While this entity is possible after transsphenoidal surgery, it remains unclear whether strontium ranelate could have affected sellar ossification.

Balancing Acts Between Ancient and Modern Cities: The Ancient Greek Cities Project of C. A. Doxiadis

Directory of Open Access Journals (Sweden)

Mantha Zarmakoupi

2015-12-01

Full Text Available This paper examines the inception and development of the Ancient Greek Cities (AGC research project (1963–77 of Constantinos A. Doxiadis and addresses the novelty of its methodological approach to the study of classical urbanism. With the AGC project, Doxiadis launched a comprehensive study of the ancient Greek built environment to provide an overview of the factors involved in its shaping. The project produced 24 published volumes — the first two laying out the historical and methodological parameters of the ensuing 22 monographs with case studies — as well as 12 unpublished manuscripts, and through international conferences initiated a wider dialogue on ancient cities beyond the classical Greek world. It was the first interdisciplinary study that attempted to tackle the environmental factors, together with the social and economic ones, underpinning the creation, development and operation of ancient Greek cities. Doxiadis’s innovative approach to the analysis of the ancient city was indebted to his practice as an architect and town planner and was informed by his theory of Ekistics. His purpose was to identify the urban planning principles of ancient Greek settlements in order to employ them in his projects. This paper examines the concept and methodology of the AGC project as well as the ways in which Doxiadis used the study of ancient cities in relation to his contemporary urban/architectural agendas, and explains this important moment in the historiography of ancient Greek urbanism.

Research on a pellet co-precipitation micro-filtration process for the treatment of liquid waste containing strontium

International Nuclear Information System (INIS)

Xin Luo; North China Institute of Science and Technology, Beijing; Guanghui Zhang; Xue Wang; Ping Gu

2013-01-01

The chemical precipitation method for radioactive wastewater treatment has the advantages of being simple and cost-effective. However, difficulties with the solid–liquid separation and sludge concentration restrict the application of this method. In this paper, a pellet co-precipitation micro-filtration (PCM) process was studied for treating strontium-containing wastewater on a laboratory scale. The seed was prepared by CaCO 3 powders. Sr 2+ and CO 3 2- were constantly crystallised on the seed surface, with Na 2 CO 3 as the precipitating agent in the pellet reactor. The following membrane separator with the addition of FeCl 3 enhanced the treatment effect. The average strontium concentrations in the raw water and in the effluent were 12.0 and 0.0220 mg/L, respectively. The strontium decontamination factor (DF) increased with the operation time, with an average value of 577. The precipitate particles formed gradually grew larger, with good sedimentation properties. When the experiment was complete, the formed precipitate was separated easily from the liquid phase and directly discharged. The concentration factor (CF) was 1,958. In the PCM process, crystallisation was the main mechanism for strontium removal, with the influent strontium level playing an important role. Membrane pore blockage and cake layer formation could help to further intercept the strontium crystallites. Furthermore, ferric chloride coagulation in the membrane separator also contributed to strontium removal. The PCM process has potential for wider application in the removal of strontium from wastewater. (author)

Gas thermodesorption study of barium and strontium cerates

International Nuclear Information System (INIS)

Aksenova, T.I.; Khromushin, I.V.; Zhotabaev, Zh.R.; Bukenov, K.D.; Medvedeva, Z.V.; Berdauletov, A.K.

2002-01-01

Kinetic of water, oxygen, hydrogen and carbon dioxide molecules release from doped and undoped samples of barium cerates and doped strontium cerates during vacuum heating was studied. The samples were prepared by inductive melting method. The following two kinds of preliminary samples treatments were used: annealing in air (650-750 deg. C) and wet nitrogen atmosphere (625 deg.C). Main results of thermodesorption studies of barium and strontium cerates are represented in the table. The samples of doped LaSrMnO were investigated also. It was found that the initial doped samples (without preliminary annealing) did not show any gas release in temperature range of 20-1100 deg. C. This fact indicates on high stability of compositions and strong bond of 'host' oxygen in their lattice. A significant amount of water and oxygen molecules were released from BaCe 0.9 Nd 0.1 O 3 samples whereas water and hydrogen molecules desorption from SrCe 0.95 Y 0.05 O 3 samples took place. Hydrogen molecules desorption was found for strontium cerates samples; no hydrogen molecules release was observed for doped and pure barium cerate samples.Intensive water molecules release from doped samples confirms the necessity of oxygen vacancies creation in these compounds to get properties of proton conductivity, since it was not found any water molecules release from annealed undoped samples of BaCeO 3 It is necessary to notice that oxygen molecules release from these samples took place at ∼1000 deg. C that is significantly higher then from BaCeNdO samples. Forms of high temperatures part of oxygen and low temperature part of water spectra indicate that phase transformations are responsible for oxygen and water molecules desorption in this cases. These results are in good agreement with literature data. Desorption of water molecules from barium and strontium cerates took place. Oxygen desorption took place only from barium cerates. It can be explained as the following: doped barium cerates have

Sr-89 therapy: strontium kinetics in disseminated carcinoma of the prostate.

Science.gov (United States)

Blake, G M; Zivanovic, M A; McEwan, A J; Ackery, D M

1986-01-01

Strontium kinetics were investigated in a group of 14 patients receiving 89Sr palliation for metastatic bone disease secondary to prostatic carcinoma. Using 85Sr as a tracer, total body strontium retention R(t) was monitored for a 3 month period following 89Sr administration, and at 90 days was found to vary from 11% to 88% and to correlate closely with the fraction of the skeleton showing scintigraphic evidence of osteoblastic metastatic involvement. Strontium renal plasma clearance varied from 1.6 l/day to 11.6 l/day, and in nine patients was significantly reduced compared with values found in healthy adult men, probably due to increased renal tubular reabsorption associated with the disturbance of calcium homoeostasis. Renal clearance rate was the principal factor determining R(t) for t less than 6 days, and was an important secondary factor at later times. Over the interval 30 days less than t less than 90 days, R(t) was closely fitted by the power law function R(t) = R30 (t/30)-b, with R30 and b showing the close correlation expected from the effect of R(t) on strontium recycling. The correction of the data for this effect to determine the true skeletal release rate is described. Measurement of localized strontium turnover in individual metastatic deposits from whole body profiles and scintigraphic images gave retention curves that typically rose to a plateau by 10 days after therapy, and then decreased very slowly. In contrast, retention curves for adjacent normal trabecular bone showed more rapid turnover, peaking at 1 day and subsequently decreasing following a t-0.2 power law function.(ABSTRACT TRUNCATED AT 250 WORDS)

Bacterial natural transformation by highly fragmented and damaged DNA

DEFF Research Database (Denmark)

Overballe-Petersen, Søren; Harms, Klaus; Orlando, Ludovic Antoine Alexandre

2013-01-01

for microbes, but not as potential substrate for bacterial evolution. Here, we show that fragmented DNA molecules (≥20 bp) that additionally may contain abasic sites, cross-links, or miscoding lesions are acquired by the environmental bacterium Acinetobacter baylyi through natural transformation. With uptake......DNA molecules are continuously released through decomposition of organic matter and are ubiquitous in most environments. Such DNA becomes fragmented and damaged (often DNA is recognized as nutrient source...... of DNA from a 43,000-y-old woolly mammoth bone, we further demonstrate that such natural transformation events include ancient DNA molecules. We find that the DNA recombination is RecA recombinase independent and is directly linked to DNA replication. We show that the adjacent nucleotide variations...

Electrochemically assisted deposition of strontium modified magnesium phosphate on titanium surfaces

International Nuclear Information System (INIS)

Meininger, M.; Wolf-Brandstetter, C.; Zerweck, J.; Wenninger, F.; Gbureck, U.; Groll, J.; Moseke, C.

2016-01-01

Electrochemically assisted deposition was utilized to produce ceramic coatings on the basis of magnesium ammonium phosphate (struvite) on corundum-blasted titanium surfaces. By the addition of defined concentrations of strontium nitrate to the coating electrolyte Sr 2+ ions were successfully incorporated into the struvite matrix. By variation of deposition parameters it was possible to fabricate coatings with different kinetics of Sr 2+ into physiological media, whereas the release of therapeutically relevant strontium doses could be sustained over several weeks. Morphological and crystallographic examinations of the immersed coatings revealed that the degradation of struvite and the release of Sr 2+ ions were accompanied by a transformation of the coating to a calcium phosphate based phase similar to low-crystalline hydroxyapatite. These findings showed that strontium doped struvite coatings may provide a promising degradable coating system for the local application of strontium or other biologically active metal ions in the implant–bone interface. - Highlights: • Sr-doped struvite coatings have been deposited on titanium by electrochemically assisted deposition. • Sr content can be adjusted by means of process time, current density and pulse mode. • Sr-doped coatings release therapeutically relevant Sr doses in physiological media for several weeks. • During immersion in physiological media Sr-doped struvite coatings transform into a low crystalline calcium phosphate phase.

Migration of strontium-90 from a strontium-90 fluoride deep ocean source

International Nuclear Information System (INIS)

Yabusaki, S.

1981-06-01

A hypothetical rupture of a heat source capsule on the ocean floor is analyzed for strontium-90 migration and attenuation. The evolution of the three-dimensional contaminant plume is simulated by a modified version of the Okubo-Pritchard radially symmetrical, diffusion velocity dispersion model. Results from this study indicate that released solutes are confined vertically to a layer near the level of introduction. Along the plume centerline, however, water quality is affected for considerably distances downstream from the source, with the maximum effect occurring after one year

Solid solution barium–strontium chlorides with tunable ammonia desorption properties and superior storage capacity

DEFF Research Database (Denmark)

Bialy, Agata; Jensen, Peter Bjerre; Blanchard, Didier

2015-01-01

with spray drying and in situ thermogravimetric and structural characterization, we synthesize a range of new, stable barium-strontium chloride solid solutions with superior ammonia storage densities. By tuning the barium/strontium ratio, different crystallographic phases and compositions can be obtained...... with different ammonia ab- and desorption properties. In particular it is shown, that in the molar range of 35–50% barium and 65–50% strontium, stable materials can be produced with a practically usable ammonia density (both volumetric and gravimetric) that is higher than any of the pure metal halides...

DNA from keratinous tissue

DEFF Research Database (Denmark)

Bengtsson, Camilla F.; Olsen, Maja E.; Brandt, Luise Ørsted

2011-01-01

Keratinous tissues such as nail, hair, horn, scales and feather have been used as a source of DNA for over 20 years. Particular benefits of such tissues include the ease with which they can be sampled, the relative stability of DNA in such tissues once sampled, and, in the context of ancient...... genetic analyses, the fact that sampling generally causes minimal visual damage to valuable specimens. Even when freshly sampled, however, the DNA quantity and quality in the fully keratinized parts of such tissues is extremely poor in comparison to other tissues such as blood and muscle – although little...... systematic research has been undertaken to characterize how such degradation may relate to sample source. In this review paper we present the current understanding of the quality and limitations of DNA in two key keratinous tissues, nail and hair. The findings indicate that although some fragments of nuclear...

Mitochondrial DNA variation in the Viking age population of Norway

OpenAIRE

Krzewińska, Maja; Bjørnstad, Gro; Skoglund, Pontus; Olason, Pall Isolfur; Bill, Jan; Götherström, Anders; Hagelberg, Erika

2015-01-01

The medieval Norsemen or Vikings had an important biological and cultural impact on many parts of Europe through raids, colonization and trade, from about AD 793 to 1066. To help understand the genetic affinities of the ancient Norsemen, and their genetic contribution to the gene pool of other Europeans, we analysed DNA markers in Late Iron Age skeletal remains from Norway. DNA was extracted from 80 individuals, and mitochondrial DNA polymorphisms were detected by next-generation sequencing. ...

Ancient DNA analysis reveals high frequency of European lactase persistence allele (T-13910 in medieval central europe.

Directory of Open Access Journals (Sweden)

Annina Krüttli

Full Text Available Ruminant milk and dairy products are important food resources in many European, African, and Middle Eastern societies. These regions are also associated with derived genetic variants for lactase persistence. In mammals, lactase, the enzyme that hydrolyzes the milk sugar lactose, is normally down-regulated after weaning, but at least five human populations around the world have independently evolved mutations regulating the expression of the lactase-phlorizin-hydrolase gene. These mutations result in a dominant lactase persistence phenotype and continued lactase tolerance in adulthood. A single nucleotide polymorphism (SNP at C/T-13910 is responsible for most lactase persistence in European populations, but when and where the T-13910 polymorphism originated and the evolutionary processes by which it rose to high frequency in Europe have been the subject of strong debate. A history of dairying is presumed to be a prerequisite, but archaeological evidence is lacking. In this study, DNA was extracted from the dentine of 36 individuals excavated at a medieval cemetery in Dalheim, Germany. Eighteen individuals were successfully genotyped for the C/T-13910 SNP by molecular cloning and sequencing, of which 13 (72% exhibited a European lactase persistence genotype: 44% CT, 28% TT. Previous ancient DNA-based studies found that lactase persistence genotypes fall below detection levels in most regions of Neolithic Europe. Our research shows that by AD 1200, lactase persistence frequency had risen to over 70% in this community in western Central Europe. Given that lactase persistence genotype frequency in present-day Germany and Austria is estimated at 71-80%, our results suggest that genetic lactase persistence likely reached modern levels before the historic population declines associated with the Black Death, thus excluding plague-associated evolutionary forces in the rise of lactase persistence in this region. This new evidence sheds light on the dynamic

Decorporation of mixture of strontium and cesium isotopes with domestic mineral waters

International Nuclear Information System (INIS)

Slavov, S.; Filev, G.; Kiradzhiev, G.

1990-01-01

The possibilities of Bulgarian mineral waters to decorporate mixtures of strontium and cesium radioisotopes, simultaneous entering the body, were studied. A modified effect in respect to radioactive strontium was found. Modification of the effect of mixing two diferent types of mineral waters was not proven. No effect was found of potassium-containing mineral water on radioactive cesium kinetics. 1 tab., 7 refs

Strontium hydroxyapatite and strontium carbonate as templates for the precipitation of calcium-phosphates in the absence and presence of fluoride

Science.gov (United States)

Sternitzke, Vanessa; Janousch, Markus; Heeb, Michèle B.; Hering, Janet G.; Johnson, C. Annette

2014-06-01

The heterogeneous precipitation of calcium-phosphates on calcium hydroxyapatite (Ca10(PO4)6(OH)2 or HAP) in the presence and absence of fluoride is important in the formation of bone and teeth, protection against tooth decay, dental and skeletal fluorosis and defluoridation of drinking water. Strontium hydroxyapatite (Sr10(PO4)6(OH)2 or SrHAP) and strontium carbonate (SrCO3) were used as calcium-free seed templates in precipitation experiments conducted with varying initial calcium-to-phosphate (Ca/P) or calcium-to-phosphate-to-fluoride (Ca/P/F) ratios. Suspensions of SrHAP or SrCO3 seed templates (which were calcium-limited for both templates and phosphate-limited in the case of SrCO3) were reacted at pH 7.3 (25 °C) over 3 days. The resulting solids were examined with Scanning Transmission Electron Microscopy (STEM), X-ray Diffraction (XRD), Fourier Transform Infrared (FTIR), and X-ray Photoelectron Spectroscopy (XPS), X-ray Absorption Near Edge Structure (XANES), and Extended X-ray Absorption Fine Structure spectroscopy (EXAFS). Calcium apatite was the predominant phase identified by all techniques independent of the added Ca/P ratios and of the presence of fluoride. It was not possible to make an unambiguous distinction between HAP and fluorapatite (Ca10(PO4)6F2, FAP). The apatite was calcium-deficient and probably contained some strontium.

A distribution ratio model of strontium by crown ether extraction from simulated HLLW

International Nuclear Information System (INIS)

Chen Jing; Wang Qiuping; Wang Jianchen; Song Chongli

1995-01-01

An experiential distribution ratio model for strontium extraction by dicyclohexano-18-crown-6-n-octanol from simulated high-level waste is established. The experimental points for the model are designed by experimental homogeneous-design method. The regression of distribution ratio model of strontium is carried out by the complex-optimization method. The model is verified with experimental distribution ratio data in different extraction conditions. The results show that the relative deviations are within +-10% and the mean relative divination is 4.4% between the calculated data and the experimental ones. The experiential model together with an iteration program can be used for the strontium extraction process calculation

Dielectric behaviour of strontium tartrate single crystals

Indian Academy of Sciences (India)

Unknown

dielectric loss (tan δ) as functions of frequency and temperature. Ion core type ... Since the data on dielectric properties of strontium tartrate trihydrate (STT) do not ... through 'AE' make 15-amp dimmerstat, the rate of heating was maintained ...

X-ray fluorescence analysis of strontium in environmental water by using barium carbonate coprecipitation method

International Nuclear Information System (INIS)

Nishioka, Hiroshi; Yoneda, Akio; Maeda, Yoshimichi; Azumi, Takatugu

1986-01-01

Determination of strontium in environmental water was studied by a coprecipitation method with barium carbonate and the subsequent X-ray fluorescence analysis. Fifty mg of barium ion and 1 g of sodium carbonate were added to sample water, which was then mixed for one hour by a magnetic stirrer. Precipitate was gathered onto a membrane filter paper to measure its XF intensity. The amount of strontium from 2 to 150 μg could be repeatedly determined by means of the calibration curve method, and the limit of detection was found to be 0.6 μg of strontium. A large amount of calcium and magnesium ions was found to interfere with the coprecipitation of strontium ion. However, this interference could be eliminated by using a small amount of sample water. Strontium in several environmental waters was determined by the above method. The results obtained from the calibration curve method and the standard addition method agreed with each other, and also agreed with those from the atomic absorption spectrometry. (author)

Investigation of the process of co-crystallization of barium and strontium nitrates from the system acetic acid-water

International Nuclear Information System (INIS)

Hubicki, W.; Piskorek, M.

1976-01-01

Co-crystallization of barium nitrate and strontium nitrate from the system CH 3 COOH-H 2 O was investigated by using radioactive tracer Ba 133 . The authors have found that during the crystallization of strontium nitrate from acetic acid solution at 25 0 C, one can obtain a 67-fold lowering of the content of barium in strontium nitrate, a 40-fold lowering of the content of barium in strontium nitrate is at 35 0 C. Strontium nitrate went to the solid phase with 70% efficiency. Acetic acid solutions of 24.5-24.3 per cent weight were used. Attention was paid to the franctionation of barium admixtures during crystallization of strontium nitrate from acetic acid solutions (so called ''isothermic salting out crystallization process'') is in agreement with the logarithmic law of Doerner-Hoskins. Process is characterized by a constant coefficient of surface co-crystallization lambda = 18. The results of investigations show that it is possible to obtain spectrally pure non-barium strontium nitrate as the result of its crystallization from the system CH 3 COOH-H 2 O at a temperature of 25 0 and 35 0 C. (author)

Strontium-90 and cesium-137 in soil from May to July 1983

International Nuclear Information System (INIS)

1983-01-01

The measured values in soil of strontium-90 and cesium-137 at a total of 4 locations throughout Japan from May to July, 1983 are given in pCi/kg and mCi/km 2 in the tables. The method of measurement is also described: collection and pretreatment of samples, preparation of the samples for analysis, separation of strontium-90 and cesium-137, determination of stable strontium, calcium and potassium, and counting. Soil was collected from the location in the spacious and flat area without any past disturbance. Soil was taken from two layers having different depths: 0--5 cm and 5--20 cm. The sample solution was neutralized with sodium hydroxide. After sodium carbonate was added, the precipitate of strontium and calcium carbonates was separated. The supernatant solution was retained for cesium-137 determination. After the radiochemical separation, the mounted precipitates were counted for activity using a low background beta counter normally for 60 min. The maximum values were 690 pCi/kg for Sr-90 and 1300 pCi/kg for Cs-137, which were obtained from the samples in the 5-to-20 cm depth, in June 1983, at Akita-ken,Japan. (Mori, K.)

Ancient DNA: Would the Real Neandertal Please Stand up?

DEFF Research Database (Denmark)

Cooper, Alan; Drummond, Alexei J.; Willerslev, Eske

2004-01-01

Mitochondrial DNA sequences recovered from eight Neandertal specimens cannot be detected in either early fossil Europeans or in modern populations. This indicates that, if Neandertals made any genetic contribution at all to modern humans, it must have been limited, though the extent of the contri...

Strontium cobaltite oxygen sponge catalyst and methods of use

Energy Technology Data Exchange (ETDEWEB)

Lee, Ho Nyung; Jeen, Hyoungjeen; Choi, Woo Seok; Biegalski, Michael; Folkman, Chad M.; Tung, I-Cheng; Fong, Dillon D.; Freeland, John W.; Shin, Dongwon; Ohta, Hiromichi; Chisholm, Matthew F.

2017-01-24

Rapid, reversible redox activity may be accomplished at significantly reduced temperatures, as low as about 200.degree. C., from epitaxially stabilized, oxygen vacancy ordered SrCoO.sub.2.5 and thermodynamically unfavorable perovskite SrCoO.sub.3-.delta.. The fast, low temperature redox activity in SrCoO.sub.3-.delta. may be attributed to a small Gibbs free energy difference between the two topotactic phases. Epitaxially stabilized thin films of strontium cobaltite provide a catalyst adapted to rapidly transition between oxidation states at substantially low temperatures. Methods of transitioning a strontium cobaltite catalyst from a first oxidation state to a second oxidation state are described.

Development of a strontium chronic effects benchmark for aquatic life in freshwater.

Science.gov (United States)

McPherson, Cathy A; Lawrence, Gary S; Elphick, James R; Chapman, Peter M

2014-11-01

There are no national water-quality guidelines for strontium for the protection of freshwater aquatic life in North America or elsewhere. Available data on the acute and chronic toxicity of strontium to freshwater aquatic life were compiled and reviewed. Acute toxicity was reported to occur at concentrations ranging from 75 mg/L to 15 000 mg/L. The majority of chronic effects occurred at concentrations above 11 mg/L; however, calculation of a representative benchmark was confounded by results from 4 studies indicating that chronic effects occurred at lower concentrations than all other studies, in 2 cases below background concentrations reported for US and European streams. Two of these studies, including 1 reporting effects below background concentrations, were repeated and found not to be reproducible; chronic effects occurred at considerably higher strontium concentrations than in the original studies. Studies with narrow-mouthed toad and goldfish were not repeated; both studies reported chronic effects below background concentrations, and both studies had been conducted by the authors of 1 of the 2 studies that were repeated and shown to be nonreproducible. Studies by these authors (3 of the 4 confounding studies), conducted over 30 yr ago, lacked detail in reporting of methods and results. It is thus likely that repeating the toad and goldfish studies would also have resulted in a higher strontium effects concentration. A strontium chronic effects benchmark of 10.7 mg/L that incorporates the results of additional testing summarized in the present study is proposed for freshwater environments. © 2014 SETAC.

Ancient origin and maternal inheritance of blue cuckoo eggs.

Science.gov (United States)

Fossøy, Frode; Sorenson, Michael D; Liang, Wei; Ekrem, Torbjørn; Moksnes, Arne; Møller, Anders P; Rutila, Jarkko; Røskaft, Eivin; Takasu, Fugo; Yang, Canchao; Stokke, Bård G

2016-01-12

Maternal inheritance via the female-specific W chromosome was long ago proposed as a potential solution to the evolutionary enigma of co-existing host-specific races (or 'gentes') in avian brood parasites. Here we report the first unambiguous evidence for maternal inheritance of egg colouration in the brood-parasitic common cuckoo Cuculus canorus. Females laying blue eggs belong to an ancient (∼2.6 Myr) maternal lineage, as evidenced by both mitochondrial and W-linked DNA, but are indistinguishable at nuclear DNA from other common cuckoos. Hence, cuckoo host races with blue eggs are distinguished only by maternally inherited components of the genome, which maintain host-specific adaptation despite interbreeding among males and females reared by different hosts. A mitochondrial phylogeny suggests that blue eggs originated in Asia and then expanded westwards as female cuckoos laying blue eggs interbred with the existing European population, introducing an adaptive trait that expanded the range of potential hosts.

The last Viking King: a royal maternity case solved by ancient DNA analysis

DEFF Research Database (Denmark)

Dissing, Jørgen; Binladen, Jonas; Hansen, Anders

2006-01-01

Estridsen to haplogroup H; Estrid's sequence differed from that of Sven at two positions in HVR-1, 16093T-->C and 16304T-->C, indicating that she belongs to subgroup H5a. Given the maternal inheritance of mtDNA, offspring will have the same mtDNA sequence as their mother with the exception of rare cases...... doubts among historians whether the woman entombed was indeed Estrid. To shed light on this problem, we have extracted and analysed mitochondrial DNA (mtDNA) from pulp of teeth from each of the two royals. Four overlapping DNA-fragments covering about 400bp of hypervariable region 1 (HVR-1) of the D...

Aiding the Interpretation of Ancient Documents

DEFF Research Database (Denmark)

Roued-Cunliffe, Henriette

How can Decision Support System (DSS) software aid the interpretation process involved in the reading of ancient documents? This paper discusses the development of a DSS prototype for the reading of ancient texts. In this context the term ‘ancient documents’ is used to describe mainly Greek...... tool it is important first to comprehend the interpretation process involved in reading ancient documents. This is not a linear process but rather a recursive process where the scholar moves between different levels of reading, such as ‘understanding the meaning of a character’ or ‘understanding...

Deposition of caesium and strontium substances on growing crops: Effects and countermeasures

International Nuclear Information System (INIS)

Bengtsson, S.

2010-01-01

Full text: To investigate how the two radionuclides caesium ( 134 Cs) and strontium ( 85 Sr) are taken up and transported to the harvested parts (the seeds) by fallout in a growing crop. Further on how this is related to the size and time of the fallout. From the information collected recommendation of suitable countermeasures at different scenarios to prevent further spreading to food stuff can be suggested. In the project a number of field trials where artificial deposited by the two radionuclides 134 Cs and 85 Sr in a contaminated rainfall, on the two agricultural crops Brassica napus L. (spring rape) and Triticum aestivum L. (spring wheat). The trial contained different treatments where the radionuclides where deposited by a rainfall simulator at different growing stages of the crops. The field trial continues for two more years and the reason for that is due to the variation of the climate for the different years. The radionuclides were applied in the form of a wet deposition and the rainfall was about 1 mm m -1 with a concentration of 20 kBq m -1 for each radionuclide. Samples were taken from the plots at the day(s) after the treatment of contaminated rainfall, both from the latest treated plots and from the earlier treated plots. The hypotheses are: 1. That the size of the deposition and the time in relation to the development stages of the crop will steer how much caesium and strontium that are coughed, detained and transferred to the harvested parts. 2. That the levels of caesium and strontium in the harvested parts of the crops are related to the insensitivity of the rainfall after a deposition and also how long time the first intensive rain will occur. 3. That the size of caesium and strontium in harvested plant parts are related to the size of uptake throw the leaves. 4. If the deposition of caesium and strontium will be the same, the levels of caesium will be much higher than strontium in the harvested parts. (author)

Bioactivity and corrosion properties of novel coatings containing strontium by micro-arc oxidation

Energy Technology Data Exchange (ETDEWEB)

Kung, Kuan-Chen [Department of Materials Science and Engineering, National Cheng Kung University, Tainan, Taiwan (China); Lee, Tzer-Min, E-mail: tmlee@mail.ncku.edu.t [Institute of Oral Medicine, National Cheng Kung University, Tainan, Taiwan (China); Lui, Truan-Sheng [Department of Materials Science and Engineering, National Cheng Kung University, Tainan, Taiwan (China)

2010-10-22

Research highlights: The dental implant of titanium could be modified by anodic oxidation. It was found that incorporation of strontium ions into the matrix increase the bone formation. In this study, we try to investigate the effect of corrosion property and bioactivity on coatings containing strontium by anodic oxidation. The results suggest that coatings containing strontium on titanium by anodic oxidation has the potential to show the stability and bioactivity in the clinical use. - Abstract: Pure titanium (Ti) and titanium alloys are considered as bio-inert materials in clinical use. Bioactivity is the ability to induce bone-like apatite on the material surface. The micro-arc oxidation (MAO) technique is an effective method for improving the surface properties of titanium. The aim of this study was to investigate the bioactivity and corrosion behavior of MAO coatings containing strontium, which is beneficial for biological performance. The bioactivity of materials was evaluated based on the ability to induce a bond-like apatite layer on the surface in simulated body fluid (SBF), as proposed by Kokubo et al. After the materials were soaked in SBF for 1 day, precipitates formed on the surface of MAO coating. The surface of MAO coatings was completely covered with precipitates after 7 days. The precipitates, which were found to be composed of fiber structures, were identified as the apatite phase using thin film X-ray diffraction (TF-XRD). The results show that MAO coatings containing strontium can induce the formation of an apatite layer on their surface. In the potentiodynamic test, MAO coatings exhibited a more noble corrosion potential (E{sub corr}) than that of titanium in SBF. In the passive region, the current density of MAO coatings was lower than that of titanium. All findings in this study indicated that MAO coatings containing strontium have good bioactivity and corrosion resistance for clinical applications.

Bioactivity and corrosion properties of novel coatings containing strontium by micro-arc oxidation

International Nuclear Information System (INIS)

Kung, Kuan-Chen; Lee, Tzer-Min; Lui, Truan-Sheng

2010-01-01

Research highlights: The dental implant of titanium could be modified by anodic oxidation. It was found that incorporation of strontium ions into the matrix increase the bone formation. In this study, we try to investigate the effect of corrosion property and bioactivity on coatings containing strontium by anodic oxidation. The results suggest that coatings containing strontium on titanium by anodic oxidation has the potential to show the stability and bioactivity in the clinical use. - Abstract: Pure titanium (Ti) and titanium alloys are considered as bio-inert materials in clinical use. Bioactivity is the ability to induce bone-like apatite on the material surface. The micro-arc oxidation (MAO) technique is an effective method for improving the surface properties of titanium. The aim of this study was to investigate the bioactivity and corrosion behavior of MAO coatings containing strontium, which is beneficial for biological performance. The bioactivity of materials was evaluated based on the ability to induce a bond-like apatite layer on the surface in simulated body fluid (SBF), as proposed by Kokubo et al. After the materials were soaked in SBF for 1 day, precipitates formed on the surface of MAO coating. The surface of MAO coatings was completely covered with precipitates after 7 days. The precipitates, which were found to be composed of fiber structures, were identified as the apatite phase using thin film X-ray diffraction (TF-XRD). The results show that MAO coatings containing strontium can induce the formation of an apatite layer on their surface. In the potentiodynamic test, MAO coatings exhibited a more noble corrosion potential (E corr ) than that of titanium in SBF. In the passive region, the current density of MAO coatings was lower than that of titanium. All findings in this study indicated that MAO coatings containing strontium have good bioactivity and corrosion resistance for clinical applications.

Non-Fickian dispersive transport of strontium in laboratory-scale columns: Modelling and evaluation

Science.gov (United States)

Liu, Dongxu; Jivkov, Andrey P.; Wang, Lichun; Si, Gaohua; Yu, Jing

2017-06-01

In the context of environmental remediation of contaminated sites and safety assessment of nuclear waste disposal in the near-surface zone, we investigate the leaching and non-Fickian dispersive migration with sorption of strontium (mocking strontium-90) through columns packed with sand and clay. Analysis is based on breakthrough curves (BTCs) from column experiments, which simulated rainfall infiltration and source term release scenario, rather than applying constant tracer solution at the inlet as commonly used. BTCs are re-evaluated and transport parameters are estimated by inverse modelling using two approaches: (1) equilibrium advection-dispersion equation (ADE); and (2) continuous time random walk (CTRW). Firstly, based on a method for calculating leach concentration, the inlet condition with an exponential decay input is identified. Secondly, the results show that approximately 39%-58% of Br- and 16%-49% of Sr2+ are eluted from the columns at the end of the breakthrough experiments. This suggests that trapping mechanisms, including diffusion into immobile zones and attachment of tracer on mineral surfaces, are more pronounced for Sr2+ than for Br-. Thirdly, we demonstrate robustness of CTRW-based truncated power-law (TPL) model in capturing non-Fickian reactive transport with 0 2. The non-Fickian dispersion observed experimentally is explained by variations of local flow field from preferential flow paths due to physical heterogeneities. Particularly, the additional sorption process of strontium on clay minerals contributes to the delay of the peak concentration and the tailing features, which leads to an enhanced non-Fickian transport for strontium. Finally, the ADE and CTRW approaches to environmental modelling are evaluated. It is shown that CTRW with a sorption term can describe non-Fickian dispersive transport of strontium at laboratory scale by identifying appropriate parameters, while the traditional ADE with a retardation factor fails to reproduce

Full-Scale and Bench-Scale Studies on the Removal of Strontium from Water (abstract)

Science.gov (United States)

Strontium (Sr) is a natural and commonly occurring alkaline earth metal which has an oxidation state of +2 under normal environmental conditions. Stable strontium is suspended in water and is dissolved after water runs through rocks and soil. It behaves very similar to calcium. G...