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Sample records for ancestral pacific gondwana

  1. Tectonomagmatic controls on Gondwana break-up models: Evidence from the Proto-Pacific Margin of Antarctica

    Science.gov (United States)

    Storey, Bryan C.; Alabaster, Tony

    1991-12-01

    Geochemical and isotopic data are presented that suggest the existence of a large, Middle Jurassic subduction-related magmatic province common to both the Antarctic Peninsula and southern South America. We argue that during the initial stages of Gondwana breakup, Pacific margin magmas were derived from an enriched lithospheric mantle source similar to that for the contemporaneous within-plate Ferrar-Tasman suite. Enriched lithospheric initial-rifting magmas were succeeded, in at least part of the Rocas Verdes basin, by transitional early drift magmas and then by entirely asthenospheric mid-ocean ridge basalt (MORB) magmas representing lithospheric rupture and seafloor spreading. We propose a plate interaction model for the initial stages of Gondwana breakup relating the broad zone of lithospheric mantle melting to a reduction in plate boundary forces. The change from Gondwanide compression to lithospheric extension in the Jurassic is linked to a change from shallow to steeply dipping subduction and to a slowing of subduction rates caused possibly by a decreasing age of the subducting plate. Ridge-trench interaction may have followed subduction of young, hot oceanic lithosphere, possibly causing a temporary cessation of subduction and a further reduction in plate boundary forces, thus facilitating breakup.

  2. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific.

    OpenAIRE

    Rapacz, J; Chen, L.; Butler-Brunner, E; Wu, M J; Hasler-Rapacz, J O; Butler, R.; Schumaker, V N

    1991-01-01

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB ha...

  3. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific

    International Nuclear Information System (INIS)

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes

  4. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific

    Energy Technology Data Exchange (ETDEWEB)

    Rapacz, J.; Hasler-Rapacz, J.O. (Univ. of Wisconsin, Madison (United States)); Chen, L.; Wu, Mingjiuan; Schumaker, V.N. (Univ. of California, Los Angeles (United States)); Butler-Brunner, E.; Butler, R. (Swiss Red Cross Blood Transfusion Service, Bern (Switzerland))

    1991-02-15

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes.

  5. Using ancient DNA to study the origins and dispersal of ancestral Polynesian chickens across the Pacific.

    Science.gov (United States)

    Thomson, Vicki A; Lebrasseur, Ophélie; Austin, Jeremy J; Hunt, Terry L; Burney, David A; Denham, Tim; Rawlence, Nicolas J; Wood, Jamie R; Gongora, Jaime; Girdland Flink, Linus; Linderholm, Anna; Dobney, Keith; Larson, Greger; Cooper, Alan

    2014-04-01

    The human colonization of Remote Oceania remains one of the great feats of exploration in history, proceeding east from Asia across the vast expanse of the Pacific Ocean. Human commensal and domesticated species were widely transported as part of this diaspora, possibly as far as South America. We sequenced mitochondrial control region DNA from 122 modern and 22 ancient chicken specimens from Polynesia and Island Southeast Asia and used these together with Bayesian modeling methods to examine the human dispersal of chickens across this area. We show that specific techniques are essential to remove contaminating modern DNA from experiments, which appear to have impacted previous studies of Pacific chickens. In contrast to previous reports, we find that all ancient specimens and a high proportion of the modern chickens possess a group of unique, closely related haplotypes found only in the Pacific. This group of haplotypes appears to represent the authentic founding mitochondrial DNA chicken lineages transported across the Pacific, and allows the early dispersal of chickens across Micronesia and Polynesia to be modeled. Importantly, chickens carrying this genetic signature persist on several Pacific islands at high frequencies, suggesting that the original Polynesian chicken lineages may still survive. No early South American chicken samples have been detected with the diagnostic Polynesian mtDNA haplotypes, arguing against reports that chickens provide evidence of Polynesian contact with pre-European South America. Two modern specimens from the Philippines carry haplotypes similar to the ancient Pacific samples, providing clues about a potential homeland for the Polynesian chicken. PMID:24639505

  6. The forebrain of the Pacific hagfish: a cladistic reconstruction of the ancestral craniate forebrain.

    Science.gov (United States)

    Wicht, H; Northcutt, R G

    1992-01-01

    The forebrain of the Pacific hagfish is described with regard to its morphology, cytoarchitecture, and secondary olfactory projections. The forebrain ventricular system is greatly reduced in adult hagfishes, although vestiges of ventricular structures can still be recognized. In order to clarify topographical relationships within the forebrain, we provide a three-dimensional reconstruction of the ventricular system, including the vestigial portions. Topography and embryology lead us to conclude that the 'primordium hippocampi' of previous authors is a diencephalic structure. For topographical and hodological reasons, we interpret the 'area basalis' of previous authors to be part of the preoptic region, and we identify a part of the so-called 'nucleus olfactorius anterior' as the homologue of the striatum. The laminated pallium is dominated by secondary olfactory projections and shows a high degree of regional cytoarchitectural specialization, as does the entire forebrain. In all, 42 cell groups are identified in the forebrain of hagfishes (compared to only about 25 in lampreys, for example). This surprisingly high degree of cytoarchitectural complexity prompted us to re-examine the phylogenetic history of craniate brains with this complexity in mind. In this paper we use cladistic methodology to reconstruct a morphotype, and we conclude that the forebrains of the earliest craniates may have been more complex than previously believed. This reconstruction includes hypotheses regarding the general morphology, secondary olfactory system, and visual system, as well as the relative sizes of major divisions of the forebrain in the earliest craniates.

  7. Jurassic fishes of Gondwana

    Directory of Open Access Journals (Sweden)

    Adriana López-Arbarello

    2008-12-01

    Full Text Available The Jurassic is an important period for understanding the origin of modern fish faunas, since it saw the first radiation - and in some cases the origin - of most modern groups. In chondrichthyans, neoselachian sharks and rays diversified during this time. In actinopterygians, the neopterygians, and among them the teleosts, experienced an important radiation, which led to the appearance of several of the modern teleosts groups. In the sarcopterygians, dipnoans and actinistians approached their current forms. However, the Jurassic fossil record of fishes is strongly biased towards the Northern Hemisphere. The only notable Early Jurassic fish fauna from Gondwana is that of the Kota Formation of India. For the Middle Jurassic, the most important Gondwanan fish faunas are those of the Aalenian-Bathonian Stanleyville Beds of the Democratic Republic of Congo, in which a distinct freshwater and a marine fauna are found. In the Late Jurassic, the Gondwanan record is slightly better, with important marine faunas being known from the Oxfordian Quebrada del Profeta in Chile and the Tithonian Vaca Muerta Formation of Argentina. Freshwater faunas have been described from the Tithonian Talbragar Beds of eastern Australia and the Tithonian Cañadón Calcáreo Formation of Argentina. The taxonomic composition of the known marine actinopterygian faunas of Gondwana is in general agreement with faunas of the Northern Hemisphere. However, the Jurassic fish record from Gondwana is highly incomplete both stratigraphically and geographically, and most faunas are in need of revision, further hampering an interpretation of Jurassic fish evolution in the Southern Hemisphere.

  8. Unraveling the New England orocline, east Gondwana accretionary margin

    Science.gov (United States)

    Cawood, P. A.; Pisarevsky, S. A.; Leitch, E. C.

    2011-10-01

    The New England orocline lies within the Eastern Australian segment of the Terra Australis accretionary orogen and developed during the late Paleozoic to early Mesozoic Gondwanide Orogeny (310-230 Ma) that extended along the Pacific margin of the Gondwana supercontinent. The orocline deformed a pre-Permian arc assemblage consisting of a western magmatic arc, an adjoining forearc basin and an eastern subduction complex. The orocline is doubly vergent with the southern and northern segments displaying counter-clockwise and clockwise rotation, respectively, and this has led to contrasting models of formation. We resolve these conflicting models with one that involves buckling of the arc system about a vertical axis during progressive northward translation of the southern segment of the arc system against the northern segment, which is pinned relative to cratonic Gondwana. Paleomagnetic data are consistent with this model and show that an alternative model involving southward motion of the northern segment relative to the southern segment and cratonic Gondwana is not permissible. The timing of the final stage of orocline formation (˜270-265 Ma) overlaps with a major gap in magmatic activity along this segment of the Gondwana margin, suggesting that northward motion and orocline formation were driven by a change from orthogonal to oblique convergence and coupling between the Gondwana and Pacific plates.

  9. Estimating Ancestral Population Parameters

    OpenAIRE

    Wakeley, J.; Hey, J.

    1997-01-01

    The expected numbers of different categories of polymorphic sites are derived for two related models of population history: the isolation model, in which an ancestral population splits into two descendents, and the size-change model, in which a single population undergoes an instantaneous change in size. For the isolation model, the observed numbers of shared, fixed, and exclusive polymorphic sites are used to estimate the relative sizes of the three populations, ancestral plus two descendent...

  10. Continental Arc Magmatism and its Abrupt Termination by Ridge Subduction or Ridge Jump Along the Proto-Pacific Margin of Gondwana, Marie Byrd Land, Antarctica: A Zircon U-Pb Study

    Science.gov (United States)

    Mukasa, S. B.

    2003-12-01

    The Paleozoic and Mesozoic development and subsequent fragmentation of Gondwanaland's Pacific margin is recorded in igneous and metamorphic rocks cropping out in the Marie Byrd Land (MBL) continental block of West Antarctica, recognized on geologic and paleomagnetic grounds to comprise a distinct microplate. Widespread occurrence of metaluminous granitoids dated by the zircon U-Pb method as mid- to late Paleozoic shows that convergence-related magmatism dominated the early evolution of this margin. Dates for granodiorites, monzogranites and granites from the Ruppert and Hobbs Coasts of western MBL reveal a prolonged period of subduction-related calc-alkaline magmatism between at least 320 ñ 3 Ma (age of the oldest granodiorite dated) and 110 ñ1 Ma (the age of the Mt. Prince granite). The latter is intruded by swarms of mafic and intermediate dikes believed to record the onset of rifting that led to separation of the New Zealand microcontinent from MBL. The dikes have been dated by zircon U-Pb at 101 ñ 1 Ma. Thus, the regime along the Ruppert and Hobbs Coasts had shifted from subduction-related to rift-related magmatism within a mere ~9-m.y. period. In the Kohler Range and the Pine Island Bay areas of eastern MBL, the calc-alkaline magmatism did not terminate until 96 ñ 1 Ma, based on U-Pb dating of zircons from one granitoid sample, or 94 ñ 3 Ma based on zircons from another. No continental separation occurred to the east of MBL. The margins of the Thurston Island and Antarctic Peninsula blocks went directly from convergent to inactive. With their zircon U-Pb ages clustering around 100 ñ 2 Ma, dike-free "anorogenic" syenites and quartz syenites along the Ruppert and Hobbs Coasts show that the transition to extensional magmatism was rapid in the west. This is also reflected by the fact that from the onset of rifting at 101 ñ 1 Ma to formation of oceanic crust between MBL and Greater New Zealand (Campbell Plateau, Chatham Rise, North Island and South Island

  11. Neopaleozoic flora in stratigraphic zones of Gondwana

    Energy Technology Data Exchange (ETDEWEB)

    Archangelsky, S.

    1984-01-01

    Carboniferous and Permian floristic sequences in Gondwana and adjacent areas are analyzed. These data are distributed on palaeogeographic maps that correspond to four chronologic segments: lower Carboniferous-early middle Carboniferous, early middle Carboniferous-middle late Carboniferous, lower Permian and upper Permian. A correlation of zones and floral assemblages during the late Palaeozoic is proposed on the base of recent data. The distribution of possible periglacial sediments (diamictites) is also included in the sequences. It is concluded that palaeogeography conditioned the floristic development in Gondwana. An independent evolution of different gondwanic areas is suggested by the continuous change in their palaeolatitudinal disposition. South Africa and South America had a similar development during the Permian and belong to the Northafroamerican Palaeofloristic Province. During the same period, on the other hand, Australia, India and Antartica had a more temperate climatic regime, being located nearer the pole; they may belong to the Indoaustralian Palaefloristic Province. 44 refs.

  12. South China's Gondwana connection in the Paleozoic:Paleomagnetic evidence

    Institute of Scientific and Technical Information of China (English)

    ZHANG Shihong

    2004-01-01

    The reconstruction in which the South China Block (SCB) lies along the Great India-Australia region of Gondwana margin is tested by using existing Paleozoic paleomagnetic data.Under the proposed reconstruction, all six high quality paleopoles from the SCB between the Early Cambrian and late Early Devonian (~400 Ma) are in good agreement with coeval paleopoles from Gondwana.Thereafter, the apparent polar wander paths for the SCB and Gondwana diverge markedly.This indicates that the SCB had been part of Gondwana and the connection was intact from at least Early Cambrian until late Early Devonian, but they began to separate by late Middle Devonian (~375 Ma).

  13. Jurassic fishes of Gondwana Peces jurásicos de Gondwana

    Directory of Open Access Journals (Sweden)

    Adriana López-Arbarello

    2008-12-01

    Full Text Available The Jurassic is an important period for understanding the origin of modern fish faunas, since it saw the first radiation - and in some cases the origin - of most modern groups. In chondrichthyans, neoselachian sharks and rays diversified during this time. In actinopterygians, the neopterygians, and among them the teleosts, experienced an important radiation, which led to the appearance of several of the modern teleosts groups. In the sarcopterygians, dipnoans and actinistians approached their current forms. However, the Jurassic fossil record of fishes is strongly biased towards the Northern Hemisphere. The only notable Early Jurassic fish fauna from Gondwana is that of the Kota Formation of India. For the Middle Jurassic, the most important Gondwanan fish faunas are those of the Aalenian-Bathonian Stanleyville Beds of the Democratic Republic of Congo, in which a distinct freshwater and a marine fauna are found. In the Late Jurassic, the Gondwanan record is slightly better, with important marine faunas being known from the Oxfordian Quebrada del Profeta in Chile and the Tithonian Vaca Muerta Formation of Argentina. Freshwater faunas have been described from the Tithonian Talbragar Beds of eastern Australia and the Tithonian Cañadón Calcáreo Formation of Argentina. The taxonomic composition of the known marine actinopterygian faunas of Gondwana is in general agreement with faunas of the Northern Hemisphere. However, the Jurassic fish record from Gondwana is highly incomplete both stratigraphically and geographically, and most faunas are in need of revision, further hampering an interpretation of Jurassic fish evolution in the Southern Hemisphere.El Período Jurásico es muy importante para entender el origen de las ictiofaunas modernas, dado que evidenció la primera radiación - y en algunos casos el origen - de la mayoría de los grupos modernos. Así, los condrictios neoselacios se diversificaron durante este periodo. Los actinopterigios

  14. Ancestral reconstruction of tick lineages.

    Science.gov (United States)

    Mans, Ben J; de Castro, Minique H; Pienaar, Ronel; de Klerk, Daniel; Gaven, Philasande; Genu, Siyamcela; Latif, Abdalla A

    2016-06-01

    Ancestral reconstruction in its fullest sense aims to describe the complete evolutionary history of a lineage. This depends on accurate phylogenies and an understanding of the key characters of each parental lineage. An attempt is made to delineate our current knowledge with regard to the ancestral reconstruction of the tick (Ixodida) lineage. Tick characters may be assigned to Core of Life, Lineages of Life or Edges of Life phenomena depending on how far back these characters may be assigned in the evolutionary Tree of Life. These include housekeeping genes, sub-cellular systems, heme processing (Core of Life), development, moulting, appendages, nervous and organ systems, homeostasis, respiration (Lineages of Life), specific adaptations to a blood-feeding lifestyle, including the complexities of salivary gland secretions and tick-host interactions (Edges of Life). The phylogenetic relationships of lineages, their origins and importance in ancestral reconstruction are discussed. Uncertainties with respect to systematic relationships, ancestral reconstruction and the challenges faced in comparative transcriptomics (next-generation sequencing approaches) are highlighted. While almost 150 years of information regarding tick biology have been assembled, progress in recent years indicates that we are in the infancy of understanding tick evolution. Even so, broad reconstructions can be made with relation to biological features associated with various lineages. Conservation of characters shared with sister and parent lineages are evident, but appreciable differences are present in the tick lineage indicating modification with descent, as expected for Darwinian evolutionary theory. Many of these differences can be related to the hematophagous lifestyle of ticks. PMID:26868413

  15. Ordovician rafinesquinine brachiopods from peri-Gondwana

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    Jorge Colmenar

    2016-06-01

    Full Text Available The study of the strophomenide brachiopods of the subfamily Rafinesquininae present in the main Upper Ordovician sections, representing the Mediterranean margin of Gondwana, has revealed an increase in diversity of the group at the region during that time. The studied collections are from the Moroccan Anti-Atlas, the Iberian and the Armorican massifs, the Iberian Chains, Pyrenees, Montagne Noire, Sardinia, and Bohemia. Two genera of the subfamily Rafinesquininae have been recorded. Of them, the cosmopolitan Rafinesquina is the only one previously reported from the region and Kjaerina is found for the first time outside Avalonia, Baltica, and Laurentia. Additionally, two new subgenera have been described, Kjaerina (Villasina and Rafinesquina (Mesogeina. Furthermore, the new species Rafinesquina (Mesogeina gabianensis, Rafinesquina (Mesogeina loredensis, Kjaerina (Kjaerina gondwanensis, Kjaerina (Villasina pedronaensis, Kjaerina (Villasina pyrenaica, and Kjaerina (Villasina meloui have been described. In addition, other species of these genera previously known from isolated localities in the region, such as Rafinesquina pseudoloricata, Rafinesquina pomoides, and Hedstroemina almadenensis are revised and their geographic range expanded. The adaptive radiation experienced by the rafinesquinines at the Mediterranean region during middle to late Katian, was probably related to changes in the regime of sedimentation and water temperature caused by the global warming Boda event.

  16. New data refine the travels of Gondwana

    Science.gov (United States)

    Schultz, Colin

    2011-09-01

    The supercontinent Pangea, which existed roughly 300-200 million years ago as the only landmass on Earth, plays a special role in the history of geophysics. The geological, biological, and paleontological similarities between now distant shores—once connected in Pangea—gave the first evidence for the theory of continental drift. That Pangea came apart to form the modern world is well established, but exactly how, when, and where the individual plates moved are still up for debate. Drawing on new high-quality paleomagnetic data, Domeier et al. describe the movements of Gondwana that, until its separation from Laurasia 200 million years ago, formed the southern half of Pangea. The authors collected samples drawn from the Sierra Chica, a band of ancient volcanic rocks in central Argentina. Within the samples the magnetic minerals hematite and titanomagnetite were used to calculate the geographic location of the magnetic pole 263 million years ago. Because the Earth's magnetic poles drift only slightly over time and have well-known reversal episodes, deviations in the location of the calculated pole (paleopole) from the present location are an indication that the plate underlying the volcanic rock has moved since the lava solidified. Changes in the paleopole drawn from samples of different ages from the same plate give a map for the plate's movement. (Geochemistry, Geophysics, Geosystems, doi:10.1029/2011GC003616, 2011)

  17. Patterns of Gondwana plant colonisation anddiversification

    Science.gov (United States)

    Anderson, J. M.; Anderson, H. M.; Archangelsky, S.; Bamford, M.; Chandra, S.; Dettmann, M.; Hill, R.; McLoughlin, S.; Rösler, O.

    Charting the broad patterns of vascular plant evolution for Gondwana againstthe major global environmental shifts and events is attempted here for the first time. This is based on the analysis of the major vascular plant-bearing formations of the southern continents (plus India) correlated against the standard geological time-scale. Australia, followed closely by South America, are shown to yield by far the most complete sequences of productive strata. Ten seminal turnover pulses in the unfolding evolutionary picture are identified and seen to be linked to continental drift, climate change and mass global extinctions. The rise of vascular plants along the tropical belt, for instance, followed closely after the end-Ordovician warming and extinction. Equally remarkable is that the Late Devonian extinction may have caused both the terrestrialisation of the vertebrates and the origin of the true gymnosperms. The end-Permian extinction, closure of Iapetus, together with warming, appears to have set in motion an unparalleled, explosive, gymnosperm radiation; whilst the Late Triassic extinction dramatically curtailed it. It is suggested that the latitudinal diversity gradient clearly recognised today, where species richness increases towards the tropics, may have been partly reversed during phases of Hot House climate. Evidence hints at this being particularly so at the heyday of the gymnosperms in the Late Triassic super-Hot House world. As for the origin of terrestrial, vascular, plant life, the angiosperms seem closely linked to a phase of marked shift from Ice House to Hot House. Insect and tetrapod evolutionary patterns are discussed in the context of the plants providing the base of the ever-changing ecosystems. Intimate co-evolution is often evident. This isn't always the case, for example the non-linkage between the dominant, giant, long-necked, herbivorous sauropod dinosaurs and the dramatic radiation of the flowering plants in the Mid Cretaceous.

  18. Isotopic characterisation of the sub-continental lithospheric mantle beneath Zealandia, a rifted fragment of Gondwana

    DEFF Research Database (Denmark)

    Waight, Tod Earle; Scott, James M.; van der Meer, Quinten Har Adriaan

    2013-01-01

    The greater New Zealand region, known as Zealandia, represents an amalgamation of crustal fragments accreted to the paleo-Pacific Gondwana margin and which underwent significant thinning during the subsequent split from Australia and Antarctica in the mid-Cretaceous following opening of the Tasma...... Sea and the Southern Ocean. We present Sr, Nd and Pb isotopes and laser ablation trace element data for a comprehensive suite of clinopyroxene separates from spinel peridotite xenoliths (lherzolite to harzburgite) from the sub-continental lithospheric mantle across southern New Zealand....... These xenoliths were transported to the surface in intra-plate alkaline volcanics that erupted across the region in the Eocene and Miocene (33-10 m.y.a.). Most of the volcanic suites have similar geochemical and isotopic properties that indicate melting of an OIB-like mantle source in the garnet stability zone...

  19. Kinematics of late Paleozoic continental collision between Laurentia and Gondwana

    Science.gov (United States)

    Sacks, P.E.; Secor, D.T.

    1990-01-01

    In the Appalachians, late Paleozoic Alleghanian orogenesis is widely regarded as resulting from dextral oblique collision between irregular margins of Gondwana and Laurentia. However, this relative plate motion cannot account for coeval convergence in the Ouachitas and Variscides and is incompatible with some tectonic transport indicators in the Appalachians. An alternative kinematic model is proposed in which early sinistral transpression in the Appalachians is followed by counterclockwise rotation of Gondwana and the development of a system of dextral strike-slip faults extending from southern Europe to Alabama.

  20. Paleomagnetism of some Gondwana red beds from central India

    NARCIS (Netherlands)

    Wensink, H.

    1968-01-01

    Oriented samples were collected for paleomagnetic research from red horizons of the Gondwana sediments at a few localities in central India. The specimens were subjected to both alternating-field and thermal demagnetization and were measured on astatic magnetometers. Usually a stable direction of ma

  1. Gondwana to Pangea: a detrital zircons tale from NW Iberia

    Science.gov (United States)

    Pastor-Galán, Daniel; Gutiérrez-Alonso, Gabriel; Brendan Murphy, J.; Fernández-Suárez, Javier; Hofmann, Mandy; Linnemann, Ulf

    2013-04-01

    The Cantabrian Zone of NW Iberia preserves a voluminous, almost continuous, sedimentary sequence that ranges from Neoproterozoic to Early Permian in age. Its tectonic setting is controversial and recent hypotheses include (i) passive margin deposition along the northern margin of Gondwana or (ii) an active continental margin or (iii) a drifting ribbon continent. In this paper we present detrital zircon U-Pb laser ablation age data from 13 samples from the Cantabrian Zone sequence ranging from Early Silurian to Early Permian in depositional age, which, together with previously published detrital zircon ages from Ediacaran-Ordovician strata, allow a comprehensive analysis of changing provenance through time. Laser ablation U-Pb geochronological analysis of detrital zircons in thirteen samples of the Cantabrian Zone of the NW Iberian Variscan belt reveal that this portion of Iberia was part of the northern passive-margin of Gondwana from the Ordovician to Late Devonian, until the onset of collision between Gondwana and Laurentia. Zircon populations in these samples show important similarities with zircons found in coeval detrital rocks from central North Africa. Additionally, the populations found in NW Iberia are coherent with a Saharan source. We suggest that NW Iberia was situated from Ordovician to Late Devonian along the Gondwana northern passive margin close to the paleoposition of central North Africa and Saharan craton. Additionally, the Carboniferous-Permian samples studied record the provenance changes produced during the Variscan collision and basement exhumation, the Cantabrian orocline formation and the subsequent detachment of the lithospheric mantle. The provenance changes reflect major topographic variations due to the afore mentioned processes during Late Devonian to Early Permian times. Detrital zircon studies are a useful tool that can complement regional syntheses in deducing paleogeographic locations, the occurrence of major tectonic events such

  2. Shrinkage Effect in Ancestral Maximum Likelihood

    CERN Document Server

    Mossel, Elchanan; Steel, Mike

    2008-01-01

    Ancestral maximum likelihood (AML) is a method that simultaneously reconstructs a phylogenetic tree and ancestral sequences from extant data (sequences at the leaves). The tree and ancestral sequences maximize the probability of observing the given data under a Markov model of sequence evolution, in which branch lengths are also optimized but constrained to take the same value on any edge across all sequence sites. AML differs from the more usual form of maximum likelihood (ML) in phylogenetics because ML averages over all possible ancestral sequences. ML has long been known to be statistically consistent -- that is, it converges on the correct tree with probability approaching 1 as the sequence length grows. However, the statistical consistency of AML has not been formally determined, despite informal remarks in a literature that dates back 20 years. In this short note we prove a general result that implies that AML is statistically inconsistent. In particular we show that AML can `shrink' short edges in a t...

  3. Panjal Paleomagnetism: Implications for Early Permian Gondwana break-up

    Science.gov (United States)

    Stojanovic, D.; Aitchison, J.; Ali, J. R.; Ahmad, T.; Ahmad Dar, R.; Agarwal, A.; Roeder, T.

    2013-12-01

    The mid-Early Permian represents an important phase in Pangaea's development marking the time when the >13,000 km-long string of terranes that are collectively known as 'Cimmeria' separated from Gondwana's Tethyan margin (northern Africa-NE Arabia-northern India-NW and northern Australia). The ~289 Ma Panjal Traps of NW India (Kashmir) are one of a number of mafic suites (Abor, Sikkim etc.) that were erupted onto the Indian block possibly during the separation of the Lhasa/SE Qiangtang block. Herein, we report data from the first modern paleomagnetic study of the unit. Results from four quarry sections (15 individual cooling units) from a locality close to Srinagar together form a tectonically coherent sequence spanning 2-3 km of stratigraphy. The derived direction and paleopole yield key new information concerning (1) the Early Permian location of India, and by inference that of central Gondwana, and (2) inform debates related to Cimmeria's breakup from eastern Gondwana. Moreover, they provide a new independent control for assessing NW Greater India's extent prior to its collision with Asia and the amount of vertical-axis rotation this sector of the Himalayan range experienced in the mid to late Cenozoic.

  4. New Views of East Antarctica- from Columbia to Gondwana

    Science.gov (United States)

    Ferraccioli, F.; Forsberg, R.; Aitken, A.; Young, D. A.; Blankenship, D. D.; Bell, R. E.; Finn, C.; Martos, Y. M.; Armadillo, E.; Jacobs, J.; Ebbing, J.; Eagles, G.; Jokat, W.; Jordan, T. A.; Ruppel, A.; Läufer, A.; Dalziel, I. W. D.

    2015-12-01

    East Antarctica is a keystone in the Gondwana, Rodinia and the Columbia supercontinents. Recent aerogeophysical research, augmented by satellite magnetic, gravity and seismological data is unveiling the crustal architecture of the continent. This is helping comprehend the impact of supercontinental processes such as subduction, accretion, rifting and intraplate tectonics on its evolution. A mosaic of Precambrian basement provinces is apparent in interior East Antarctica (Ferraccioli et al., 2011, Nature). A major suture separates the Archean-Neoproterozoic Ruker Province from an inferred Grenvillian-age orogenic Gamburtsev Province with remarkably thick crust (up to 60 km thick) and thick lithosphere (over 200 km thick). The age of the suturing and its linkages with supercontinental assembly is debated with both Rodinia and Gondwana candidates being proposed. Further east, magnetic highs delineate a Paleo to Mesoproterozoic Nimrod-South Pole igneous province (Goodge and Finn, 2010 JGR) that flanks a composite Mawson Continent- including the Gawler Craton of South Australia (Aitken et al., 2014 GRL). An over 1,900 km long magnetic and gravity lineament is imaged along the western flank of the Wilkes Subglacial Basin and is interpreted here as a major Paleoproterozoic suture zone linked to the collision of Laurentia and East Antarctica within Columbia. The proposed suture played a pivotal role helping localise Neoproterozoic Rodinia rifted margin evolution and forming a backstop for the Ross-Delamerian cycle of Gondwana amalgamation. Aeromagnetic and gravity imaging help determine the extent of a Keweenawan-age (ca 1.1 Ga) large igneous province in the Coats Land Block -isotopically tied with the Mid-Continent Rift System of Laurentia (Loewy et al., 2011 Geology). Imprints of Grenvillian magmatic arc accretion link together the Namaqua-Natal and Maud belts in South Africa and Dronning Maud Land within Rodinia. The aeromagnetically distinct Southeast Dronning Maud

  5. Algorithms of Ancestral Gene Length Reconstruction

    Directory of Open Access Journals (Sweden)

    Alexander Bolshoy

    2013-01-01

    Full Text Available Ancestral sequence reconstruction is a well-known problem in molecular evolution. The problem presented in this study is inspired by sequence reconstruction, but instead of leaf-associated sequences we consider only their lengths. We call this problem ancestral gene length reconstruction. It is a problem of finding an optimal labeling which minimizes the total length’s sum of the edges, where both a tree and nonnegative integers associated with corresponding leaves of the tree are the input. In this paper we give a linear algorithm to solve the problem on binary trees for the Manhattan cost function .

  6. Permian plate margin volcanism and tuffs in adjacent basins of west Gondwana: Age constraints and common characteristics

    Science.gov (United States)

    López-Gamundí, Oscar

    2006-12-01

    Increasing evidence of Permian volcanic activity along the South American portion of the Gondwana proto-Pacific margin has directed attention to its potential presence in the stratigraphic record of adjacent basins. In recent years, tuffaceous horizons have been identified in late Early Permian-through Middle Permian (280-260 Ma) sections of the Paraná Basin (Brazil, Paraguay, and Uruguay). Farther south and closer to the magmatic tract developed along the continental margin, in the San Rafael and Sauce Grande basins of Argentina, tuffs are present in the Early to Middle Permian section. This tuff-rich interval can be correlated with the appearance of widespread tuffs in the Karoo Basin. Although magmatic activity along the proto-Pacific plate margin was continuous during the Late Paleozoic, Choiyoi silicic volcanism along the Andean Cordillera and its equivalent in Patagonia peaked between the late Early Permian and Middle Permian, when extensive rhyolitic ignimbrites and consanguineous airborne tuffaceous material erupted in the northern Patagonian region. The San Rafael orogenic phase (SROP) interrupted sedimentation along the southwestern segment of the Gondwana margin (i.e., Frontal Cordillera, San Rafael Basin), induced cratonward thrusting (i.e., Ventana and Cape foldbelts), and triggered accelerated subsidence in the adjacent basins (Sauce Grande and Karoo) located inboard of the deformation front. This accelerated subsidence favored the preservation of tuffaceous horizons in the syntectonic successions. The age constraints and similarities in composition between the volcanics along the continental margin and the tuffaceous horizons in the San Rafael, Sauce Grande, Paraná, and Karoo basins strongly suggest a genetic linkage between the two episodes. Radiometric ages from tuffs in the San Rafael, Paraná, and Karoo basins indicate an intensely tuffaceous interval between 280 and 260 Ma.

  7. Paleogeography of Southwest Gondwana Boundary During the Upper Paleozoic

    Science.gov (United States)

    Tomezzoli, R. N.

    2005-05-01

    Current results are summarized from the southwest Gondwana boundary, from rocks from La Pampa province, Argentina. This area is the westward part of an orogenic belt, known as Sam Frau geosincline or Cordón de las Gondwánides and may represent the suture zone between the Gondwana and Patagonia terranes. This collision model is still uncertain and there are many controversies related to the age of the deformation of this belt. Paleomagnetism and the exploration of the magnetic fabric signatures (AMS) can be useful to evaluate the regional deformation and a better understanding of the assembly, deformation, and fragmentation of Gondwana / Pangea. A systematic paleomagnetic study was done in the Cerro Centinela: 36/deg S, 67/deg W, belong to the Choiyoi Group and consist of Lower Paleozoic volcanic rocks. In this paleomagnetic study is present results from 19 sites (84 specimens), sampled from the base to the top in different layers. Samples were demagnetized with thermal procedures. A high un¬blocking temperature component carried by hematite was defined between 580° C and 680° C, showing very good within site consistency (alpha 9520). Remanent magnetization ranges around 1500 mA m-1. In all samples it was possible to isolate one component with the same behavior and positive inclination. These stable remanent magnetization were group into two different Population: 1 and 2, clearly separated. Population 1 (from sites 1 to 12) in situ mean direction is: D=146°, I=63.5°, alpha 95=4°, k=104, N=12. Population 2 (from sites 13 to 19) in situ mean direction is: D=164°, I=42°, alpha 95=4°, k=197, N=7. Reversed characteristic remanence magnetization suggesting that the magnetization was acquired during the Kiaman interval, in accordance with their age. Two high quality paleomagnetic poles were computed for each population on the basis of the in situ remanence directions. The corresponding PP are for Population 1: 63° S, 353° E, Alpha 95=7 and K=44 and for

  8. Plate motions, Gondwana Dinosaurs, Noah's Arks, Beached Viking Funeral Ships, Ghost Ships, and Landspans

    Directory of Open Access Journals (Sweden)

    Louis L. Jacobs

    2011-03-01

    Full Text Available Gondwana landmasses have served as large-scale biogeographic Noah's Arks and Beached Viking Funeral Ships, as defined by McKenna. The latitudinal trajectories of selected Gondwana dinosaur localities were traced through time in order to evaluate their movement through climate zones relative to those in which they originally formed. The dispersal of fauna during the breakup of Gondwana may have been facilitated by the presence of offshelf islands forming landspans (sensu Iturralde-Vinent and MacPhee in the Equatorial Atlantic Gateway and elsewhere.As massas de terra do Gondwana serviram como Arcas de Noe biogeograficas de grande escala e Navios Funerarios Vikings encalhados, conforme definido por McKenna. As trajetorias latitudinais de areas selecionadas de dinossauros do Gondwana foram tracadas ao longo do tempo a fim de avaliar seu movimento atraves de zonas climaticas relativas aquelas nas quais elas foram originalmente formadas. A dispersao da fauna durante a quebra do Gondwana pode ter sido facilitada pela presenca de ilhas oceanicas formando extensoes de terra (sensu Iturralde-Vinent e MacPhee na entrada do Atlantico Equatorial e em outros lugares.

  9. Reconstructing ancestral ranges in historical biogeography: properties and prospects

    Institute of Scientific and Technical Information of China (English)

    Kristin S. LAMM; Benjamin D. REDELINGS

    2009-01-01

    Recent years have witnessed a proliferation of quantitative methods for biogeographic inference. In particular, novel parametric approaches represent exciting new opportunities for the study of range evolution. Here, we review a selection of current methods for biogeographic analysis and discuss their respective properties. These methods include generalized parsimony approaches, weighted ancestral area analysis, dispersal-vicariance analysis, the dispersal-extinction-cladogenesis model and other maximum likelihood approaches, and Bayesian stochastic mapping of ancestral ranges, including a novel approach to inferring range evolution in the context of island biogeography. Some of these methods were developed specifically for problems of ancestral range reconstruction, whereas others were designed for more general problems of character state reconstruction and subsequently applied to the study of ancestral ranges. Methods for reconstructing ancestral history on a phylogenetic tree differ not only in the types of ancestral range states that are allowed, but also in the various historical events that may change the ancestral ranges. We explore how the form of allowed ancestral ranges and allowed transitions can both affect the outcome of ancestral range estimation. Finally, we mention some promising avenues for future work in the development of model-based approaches to biogeographic analysis.

  10. Gondwana Tales: an inquiry approach to plate tectonics

    Science.gov (United States)

    Domènech Casal, Jordi

    2014-05-01

    Plate tectonics and its effects on the constitution of seas and continents are key models in science education. Fossil evidences are usually taught in demostrative key when Wegener's discoverings about Pangea are introduced. In order to introduce inquiry-based science education (IBSE) approaches to this topic, we propose "Gondwana Tales", an activity where students are asked to use fossil data to reconstruct the geologic history of an imaginary planet. Grouped in independent teams, each team is furnished with stratigraphic columns from several sites containing faunistic successions of real organisms existing in the past in Earth. Students are told to reconstruct a model of the evolution of the continents, by making calculations of relative ages of the fossils, and relating each fossil to a geologic era. The different teams have incomplete and complementary information. After a first step where they have to propose a partial model based on incomplete data, each team receives a "visitor scientist" from another team, this implying an informal scientific communication event. This process is performed several times, engaging a discussion in each team and getting a final consensus model created by the whole class. Correct answer is not given to the students, even at the end of the activity, to keep the activity under the parameters of real scientific experience, where there is not a "correct answer" to compare. Instead of this, and following the IBSE standards, a reflection on the process is proposed to students. The lack of complete information and the need to collaborate are part of classroom dynamics focused to the understanding of the process of creation of the scientific knowledge. This activity is part of the C3 Project on Creation of Scientific Knowledge that is being applied in the school.

  11. Ancestral Area Analysis of the Genus Caragara (Leguminosae)

    Institute of Scientific and Technical Information of China (English)

    ZHANGMing-Li

    2004-01-01

    Caragana has a temperate Asian distribution. Based on the phylogeny and 13 distributionalareas of this genus, its ancestral area was studied via the ancestral area analysis suggested by Bremer(1992), Ronquist (1994) and Hausdorf (1997). The results indicate that three areas, Far East-NortheastChina, Altai-Sayan and North China-Qinling Mountains (Mts) are likely the ancestral areas. Linking to theviewpoints of the Holarctic origin for north temperate flora, Far East-Northeast China seems more likely tobe the ancestral area. According to the three ancestral areas isolated geographically and the analysis inthe present study, as well as former biogeographical analysis of this genus, it is suggested that Caraganaspeciation is mainly in the mode of vicariance rather than dispersal, and dispersed is often in shortdistance.

  12. East Gondwana ancestry of the sunflower alliance of families

    OpenAIRE

    Bremer, Kåre; Gustafsson, Mats H. G.

    1997-01-01

    The sunflower alliance of families comprises nearly 10% of all flowering plant species and includes the largest of all plant families, the sunflower family Asteraceae, which has 23,000 species, and the bellflower family Campanulaceae. Both are worldwide in distribution, but the majority of their species occur in the northern hemisphere. Recently it has been shown that a number of small, woody families from the Australian–Southwest Pacific area also belong in this relationship. Here we add yet...

  13. Molecular paleontology: a biochemical model of the ancestral ribosome

    OpenAIRE

    Hsiao, Chiaolong; Lenz, Timothy K.; Peters, Jessica K; Fang, Po-Yu; Schneider, Dana M.; Anderson, Eric J.; Preeprem, Thanawadee; Bowman, Jessica C.; O'Neill, Eric B.; Lie, Lively; Athavale, Shreyas S.; Gossett, J. Jared; Trippe, Catherine; Murray, Jason; Anton S. Petrov

    2013-01-01

    Ancient components of the ribosome, inferred from a consensus of previous work, were constructed in silico, in vitro and in vivo. The resulting model of the ancestral ribosome presented here incorporates ∼20% of the extant 23S rRNA and fragments of five ribosomal proteins. We test hypotheses that ancestral rRNA can: (i) assume canonical 23S rRNA-like secondary structure, (ii) assume canonical tertiary structure and (iii) form native complexes with ribosomal protein fragments. Footprinting exp...

  14. Ancestral Rocky Mountian Tectonics: A Sedimentary Record of Ancestral Front Range and Uncompahgre Exhumation

    Science.gov (United States)

    Smith, T. M.; Saylor, J. E.; Lapen, T. J.

    2015-12-01

    The Ancestral Rocky Mountains (ARM) encompass multiple crustal provinces with characteristic crystallization ages across the central and western US. Two driving mechanisms have been proposed to explain ARM deformation. (1) Ouachita-Marathon collision SE of the ARM uplifts has been linked to an E-to-W sequence of uplift and is consistent with proposed disruption of a larger Paradox-Central Colorado Trough Basin by exhumation of the Uncompahgre Uplift. Initial exhumation of the Amarillo-Wichita Uplift to the east would provide a unique ~530 Ma signal absent from source areas to the SW, and result in initial exhumation of the Ancestral Front Range. (2) Alternatively, deformation due to flat slab subduction along a hypothesized plate boundary to the SW suggests a SW-to-NE younging of exhumation. This hypothesis suggests a SW-derived Grenville signature, and would trigger uplift of the Uncompahgre first. We analyzed depositional environments, sediment dispersal patterns, and sediment and basement zircon U-Pb and (U-Th)/He ages in 3 locations in the Paradox Basin and Central Colorado Trough (CCT). The Paradox Basin exhibits an up-section transition in fluvial style that suggests a decrease in overbank stability and increased lateral migration. Similarly, the CCT records a long-term progradation of depositional environments from marginal marine to fluvial, indicating that sediment supply in both basins outpaced accommodation. Preliminary provenance results indicate little to no input from the Amarillo-Wichita uplift in either basin despite uniformly westward sediment dispersal systems in both basins. Results also show that the Uncompahgre Uplift was the source for sediment throughout Paradox Basin deposition. These observations are inconsistent with the predictions of scenario 1 above. Rather, they suggest either a synchronous response to tectonic stress across the ARM provinces or an SW-to-NE pattern of deformation.

  15. An experimental phylogeny to benchmark ancestral sequence reconstruction.

    Science.gov (United States)

    Randall, Ryan N; Radford, Caelan E; Roof, Kelsey A; Natarajan, Divya K; Gaucher, Eric A

    2016-01-01

    Ancestral sequence reconstruction (ASR) is a still-burgeoning method that has revealed many key mechanisms of molecular evolution. One criticism of the approach is an inability to validate its algorithms within a biological context as opposed to a computer simulation. Here we build an experimental phylogeny using the gene of a single red fluorescent protein to address this criticism. The evolved phylogeny consists of 19 operational taxonomic units (leaves) and 17 ancestral bifurcations (nodes) that display a wide variety of fluorescent phenotypes. The 19 leaves then serve as 'modern' sequences that we subject to ASR analyses using various algorithms and to benchmark against the known ancestral genotypes and ancestral phenotypes. We confirm computer simulations that show all algorithms infer ancient sequences with high accuracy, yet we also reveal wide variation in the phenotypes encoded by incorrectly inferred sequences. Specifically, Bayesian methods incorporating rate variation significantly outperform the maximum parsimony criterion in phenotypic accuracy. Subsampling of extant sequences had minor effect on the inference of ancestral sequences. PMID:27628687

  16. Early Paleozoic paleogeography of Laurentia and western Gondwana: Evidence from tectonic subsidence analysis

    Science.gov (United States)

    Williams, Kenneth E.

    1997-08-01

    A number of terranes were present in the early Paleozoic ocean between Laurentia and Gondwana following rifting. The precise location of these microcontinents and island arcs is unclear. We present tectonic subsidence curves from selected basins that may provide some constraints on the possible paleogeographic interpretations for this time interval. Among these tectonic blocks were the Precordillera terrane that originated in the Ouachita area of Laurentia and the composite Avalon-Carolina terrane that was derived from the Gondwana margin. Also present were the island-arc terranes of Famatina, Mixteca, and Zapoteca. The Precordillera and Famatina terranes are currently located in southern South America. The Avalon-Carolina terrane is in eastern North America. The Mixteca and Zapoteca terranes are in Central America. A review of previous work augmented by new tectonic subsidence analysis indicates that these terranes were swept up by early Paleozoic plate movements and were translated to approximately their present relative positions by the Early Carboniferous.

  17. Early Paleozoic paleogeography of the northern Gondwana margin: new evidence for Ordovician-Silurian glaciation

    Science.gov (United States)

    Semtner, A.-K.; Klitzsch, E.

    1994-12-01

    During the Early Paleozoic, transgressions and the distribution of sedimentary facies on the northern Gondwana margin were controlled by a regional NNW-SSE to almost north-south striking structural relief. In Early Silurian times, a eustatic highstand enabled the sea to reach its maximum southward extent. The counterclockwise rotation of Gondwana during the Cambrian and Early Ordovician caused the northern Gondwana margin to shift from intertropical to southern polar latitudes in Ordovician times. Glacial and periglacial deposits are reported from many localities in Morocco, Algeria, Niger, Libya, Chad, Sudan, Jordan and Saudi Arabia. The Late Ordovician glaciation phase was followed by a period of a major glacioeustatic sea-level rise in the Early Silurian due to the retreat of the ice-cap. As a consequence of the decreasing water circulation in the basin centers (Central Arabia, Murzuk- and Ghadames basins), highly bituminous euxinic shales were deposited. These shales are considered to be the main source rock of Paleozoic oil and gas deposits in parts of Saudi Arabia, Libya and Algeria. The following regression in the southern parts of the Early Silurian sea was probably caused by a second glacial advance, which was mainly restricted to areas in Chad, Sudan and Niger. Evidence for glacial activity and fluvioglacial sedimentation is available from rocks overlying the basal Silurian shale in north-east Chad and north-west Sudan. The Early Silurian ice advance is considered to be responsible for the termination of euxinic shale deposition in the basin centers.

  18. Paleozoic terranes of eastern Australia and the drift history of Gondwana

    Science.gov (United States)

    McElhinny, Michael W.; Powell, Chris McA.; Pisarevsky, Sergei A.

    2003-02-01

    Critical assessment of Paleozoic paleomagnetic results from Australia shows that paleopoles from locations on the main craton and in the various terranes of the Tasman Fold Belt of eastern Australia follow the same path since 400 Ma for the Lachlan and Thomson superterranes, but not until 250 Ma or younger for the New England superterrane. Most of the paleopoles from the Tasman Fold Belt are derived from the Lolworth-Ravenswood terrane of the Thomson superterrane and the Molong-Monaro terrane of the Lachlan superterrane. Consideration of the paleomagnetic data and geological constraints suggests that these terranes were amalgamated with cratonic Australia by the late Early Devonian. The Lolworth-Ravenswood terrane is interpreted to have undergone a 90° clockwise rotation between 425 and 380 Ma. Although the Tamworth terrane of the western New England superterrane is thought to have amalgamated with the Lachlan superterrane by the Late Carboniferous, geological syntheses suggest that movements between these regions may have persisted until the Middle Triassic. This view is supported by the available paleomagnetic data. With these constraints, an apparent polar wander path for Gondwana during the Paleozoic has been constructed after review of the Gondwana paleomagnetic data. The drift history of Gondwana with respect to Laurentia and Baltica during the Paleozoic is shown in a series of paleogeographic maps.

  19. Intraplate mountain building in response to continent continent collision—the Ancestral Rocky Mountains (North America) and inferences drawn from the Tien Shan (Central Asia)

    Science.gov (United States)

    Dickerson, Patricia Wood

    2003-04-01

    Miocene time when full coupling of the colliding plates had occurred. As in the Laurentia-Gondwana case, structures of similar magnitude and spacing to those in Eurasia have developed in the Indian plate. Within the present orogen two ancient suture zones have been reactivated—the early Paleozoic Terskey zone and the late Paleozoic Turkestan suture between the Siberian and East Gondwanan cratons. Inverted Proterozoic to early Paleozoic rift structures and passive-margin deposits are exposed north of the Terskey zone. In the Alay and Tarim complexes, Vendian to mid-Carboniferous passive-margin strata and the subjacent Proterozoic crystalline basement have been uplifted. Data on Tien Shan uplifts, basins, structural arrays, and deformation rates guide paleotectonic interpretations of ancient intraplate mountain belts. Similarly, exhumed deep crustal shear zones in the Ancestral Rockies offer insight into partitioning and reorientation of strain during contemporary intraplate deformation.

  20. Ancestral gene synteny reconstruction improves extant species scaffolding.

    Science.gov (United States)

    Anselmetti, Yoann; Berry, Vincent; Chauve, Cedric; Chateau, Annie; Tannier, Eric; Bérard, Sèverine

    2015-01-01

    We exploit the methodological similarity between ancestral genome reconstruction and extant genome scaffolding. We present a method, called ARt-DeCo that constructs neighborhood relationships between genes or contigs, in both ancestral and extant genomes, in a phylogenetic context. It is able to handle dozens of complete genomes, including genes with complex histories, by using gene phylogenies reconciled with a species tree, that is, annotated with speciation, duplication and loss events. Reconstructed ancestral or extant synteny comes with a support computed from an exhaustive exploration of the solution space. We compare our method with a previously published one that follows the same goal on a small number of genomes with universal unicopy genes. Then we test it on the whole Ensembl database, by proposing partial ancestral genome structures, as well as a more complete scaffolding for many partially assembled genomes on 69 eukaryote species. We carefully analyze a couple of extant adjacencies proposed by our method, and show that they are indeed real links in the extant genomes, that were missing in the current assembly. On a reduced data set of 39 eutherian mammals, we estimate the precision and sensitivity of ARt-DeCo by simulating a fragmentation in some well assembled genomes, and measure how many adjacencies are recovered. We find a very high precision, while the sensitivity depends on the quality of the data and on the proximity of closely related genomes.

  1. Are survival processing memory advantages based on ancestral priorities?

    Science.gov (United States)

    Soderstrom, Nicholas C; McCabe, David P

    2011-06-01

    Recent research has suggested that our memory systems are especially tuned to process information according to its survival relevance, and that inducing problems of "ancestral priorities" faced by our ancestors should lead to optimal recall performance (Nairne & Pandeirada, Cognitive Psychology, 2010). The present study investigated the specificity of this idea by comparing an ancestor-consistent scenario and a modern survival scenario that involved threats that were encountered by human ancestors (e.g., predators) or threats from fictitious creatures (i.e., zombies). Participants read one of four survival scenarios in which the environment and the explicit threat were either consistent or inconsistent with ancestrally based problems (i.e., grasslands-predators, grasslands-zombies, city-attackers, city-zombies), or they rated words for pleasantness. After rating words based on their survival relevance (or pleasantness), the participants performed a free recall task. All survival scenarios led to better recall than did pleasantness ratings, but recall was greater when zombies were the threat, as compared to predators or attackers. Recall did not differ for the modern (i.e., city) and ancestral (i.e., grasslands) scenarios. These recall differences persisted when valence and arousal ratings for the scenarios were statistically controlled as well. These data challenge the specificity of ancestral priorities in survival-processing advantages in memory. PMID:21327372

  2. Isolation of ancestral sylvatic dengue virus type 1, Malaysia.

    Science.gov (United States)

    Teoh, Boon-Teong; Sam, Sing-Sin; Abd-Jamil, Juraina; AbuBakar, Sazaly

    2010-11-01

    Ancestral sylvatic dengue virus type 1, which was isolated from a monkey in 1972, was isolated from a patient with dengue fever in Malaysia. The virus is neutralized by serum of patients with endemic DENV-1 infection. Rare isolation of this virus suggests a limited spillover infection from an otherwise restricted sylvatic cycle. PMID:21029545

  3. Isolation of Ancestral Sylvatic Dengue Virus Type 1, Malaysia

    OpenAIRE

    Teoh, Boon-Teong; Sam, Sing-Sin; Abd-Jamil, Juraina; AbuBakar, Sazaly

    2010-01-01

    Ancestral sylvatic dengue virus type 1, which was isolated from a monkey in 1972, was isolated from a patient with dengue fever in Malaysia. The virus is neutralized by serum of patients with endemic DENV-1 infection. Rare isolation of this virus suggests a limited spillover infection from an otherwise restricted sylvatic cycle.

  4. Gondwana breakup via double-saloon-door rifting and seafloor spreading in a backarc basin during subduction rollback

    Science.gov (United States)

    Martin, A. K.

    2007-12-01

    attached to Southern Patagonia/West Antarctic Peninsula, while the Ellsworth Whitmore Terrane is combined with the Thurston Island Block; paleogeographies demonstrate rifting and extension in a backarc environment relative to a Pacific margin subduction zone/accretionary wedge where simultaneous crustal shortening occurs; a ridge jump towards the subduction zone from east of the Falkland Islands to the Rocas Verdes Basin evinces subduction rollback; this ridge jump combined with backarc extension isolated an area of thicker continental crust — The Falkland Islands Block; well-documented EW oriented seafloor spreading anomalies in the Weddell Sea are perpendicular to the subduction zone and propagate in the opposite direction to rollback; the dextral strike-slip Gastre and sub-parallel faults form one boundary of the Gondwana subduction rollback, whereas the other boundary may be formed by inferred sinistral strike-slip motion between a combined Thurston Island/Ellsworth Whitmore Terrane and Marie Byrd Land/East Antarctica.

  5. Ordovician K-bentonites in the Argentine Precordillera: relations to Gondwana margin evolution

    Science.gov (United States)

    Huff, W.D.; Bergstrom, Stig M.; Kolata, Dennis R.; Cingolani, C.A.; Astini, R.A.

    1998-01-01

    This paper is included in the Special Publication entitled 'The proto- Andean margin of Gondwana', edited by R.J. Pankhurst and C.W. Rapela. Ordovician K-bentonites have now been recorded from >20 localities in the vicinity of the Argentine Precordillera. Most occur in the eastern thrust belts, in the San Juan Limestone and the overlying the Gualcamayo Formation, but a few ash beds are known also from the central thrust belts. The oldest occur in the middle Arenig I, victoriae lunatus graptolite (Oe. evae conodont) Zone, and the youngest in the middle Llanvirn P. elegans (P. suecicus) Zone. Mineralogical characteristics, typical of other Ordovician K-bentonites, include a matrix of illite/smectite mixed-layer clay and a typical felsic volcanic phenocryst assemblage: biotite, beta-form quartz, alkali and plagioclase feldspar, apatite, and zircon, with lesser amounts of hornblende, clinopyroxene, titanite and Fe-Ti oxides. The proportions of the mineral phases and variations in their crystal chemistry are commonly unique to individual (or small groups of) K-bentonite beds. Glass melt inclusions preserved in quartz are rhyolitic in composition. The sequence is unique in its abundance of K-bentonite beds, but a close association between the Precordillera and other Ordovician sedimentary basins cannot be established. The ash distribution is most consistent with palaeogeographical reconstructions in which early Ordovician drifting of the Precordillera occurred in proximity to one or more volcanic arcs, and with eventual collision along the Andean margin of Gondwana during the mid-Ordovician Ocloyic event of the Famatinian orogeny. The Puna-Famatina terrane northeast of the Precordillera might have served as the source of the K-bentonite ashes, possibly in concert with active arc magmatism on the Gondwana plate itself.

  6. A review of the Late Cambrian (Furongian) palaeogeography in the western Mediterranean region, NW Gondwana

    Science.gov (United States)

    Álvaro, J. Javier; Ferretti, Annalisa; González-Gómez, Cristina; Serpagli, Enrico; Tortello, M. Franco; Vecoli, Marco; Vizcaïno, Daniel

    2007-11-01

    The Cambrian-Ordovician transition of the western Mediterranean region (NW Gondwana) is characterized by the record of major erosive unconformities with gaps that range from a chronostratigraphic stage to a series. The hiatii are diachronous and involved progressively younger strata along the Gondwanan margin, from SW (Morocco) to NE (Montagne Noire). They can be related to development of a multi-stage rifting (further North), currently connected to the opening of the Rheic Ocean, and concomitant erosion on southern rift shoulders. The platforms of this margin of Gondwana occupied temperate-water, mid latitudes and were dominated by siliciclastic sedimentation, while carbonate factories were only episodically active in the Montagne-Noire platform. The Upper Cambrian is devoid of significant gaps in the southern Montagne Noire and the Iberian Chains. There, the sedimentation took place in a transgressive-dominated depositional system, with common offshore deposits and clayey substrates, and was bracketed by two major regressive trends. The Late Cambrian is also associated with the record of volcanic activity ( e.g., in the Cantabrian and Ossa-Morena zones, and the northern Montagne Noire), and widespread development of a tectonic instability that led to the episodic establishment of palaeotopographies and record of slope-related facies associations. Several immigration events are recognized throughout the latest Middle Cambrian, Late Cambrian and Tremadocian. The trilobites show a stepwise replacement of Acado-Baltic-type families ( e.g., the conocoryphid-paradoxidid-solenopleurid assemblage) characterized by: (i) a late Languedocian (latest Middle Cambrian) co-occurrence of Middle Cambrian trilobite families with the first anomocarid, dorypygid and proasaphiscid invaders; (ii) a Late Cambrian immigration replacing previous faunas, composed of trilobites (aphelaspidids, catillicephalids, ceratopygids, damesellids, eulomids, idahoiids, linchakephalids, lisariids

  7. The Basement of the Andes: the Gondwana-Laurentia Connections Revisited

    Science.gov (United States)

    Ramos, V. A.

    2009-05-01

    The research performed in the last decade in the basement of the Andes have shown that the Precambrian and Paleozoic rocks have recorded a series of igneous and metamorphic events through time. These episodes can be grouped in discrete orogenic events, which have different paleogeographic distribution and intensity. The first and most important orogenic event is widely distributed along the margin and correspond to the Sunsas-Grenville orogen. Evidence of metamorphism and associated magmatic rocks are found from Colombia to the southernmost Patagonia. This episode produced the amalgamation of Amazonia, Pampia and Patagonia, among other cratonic blocks, to form Rodinia. The Rodinia break-up leaved several cratonic blocks accreted in the Gondwana side, such as Marañón, Arequipa, and Antofalla, although the generalized extension of this period produced crustal attenuation, rifted basins, and limited oceanic realms during late Proterozoic times. The Brasiliano-Pampean orogeny reamalgamated these blocks against the Gondwana margin. A new episode of break-up produced the dispersal of several Gondwanian blocks, separation along some previous sutures, crustal attenuation and magmatism in Late Cambrian times, until the new amalgamation occurred in Middle Late Ordovician times. These processes led to the Famatinian orogeny when metamorphism and arc magmatism was widely spread along the continental margin, as seen in Chibcha, Marañón, Arequipa and Sierras Pampeanas. Besides the re-accretion of some parautochthonous terranes, new exotic blocks were derived from Laurentia, such as the Cuyania terrane, which finally collided against the Andean proto-margin at ~ 460 Ma to form the Argentine Precordillera and surrounding regions. Late accretion in Early to Middle Devonian times of Chilenia and related terranes formed most of the basement of Central Andes. Final collision between Laurentia and Gondwana in the Late Carboniferous - Early Permian times to form the Alleghanides

  8. Geology and coal bed methane resource potential of the Gondwana Barapukuria Coal Basin, Dinajpur, Bangladesh

    Energy Technology Data Exchange (ETDEWEB)

    Islam, Md. Rafiqul; Hayashi, Daigoro [Department of Physics and Earth Sciences Faculty of Science, University of the Ryukyus, Okinawa, 903-0213 (Japan)

    2008-08-05

    With an area of 5.16 km{sup 2}, the Barapukuria coal deposit is one of the five largest Gondwana coal basins in Bangladesh, and is located in the north west of the country close to the towns of Dinajpur and Saidpur. The existence of the basin was initially indicated by a negative gravity anomaly in oil and gas exploration. Exploration for the deposit was commenced by the Geological Survey of Bangladesh (GSB), with seven surface boreholes that confirmed the existence of a significant coal deposit. The deposit occurs as an asymmetrical synclinal structure with an axis striking approximately N-S. The deposit is limited to the east by a large normal fault which has displaced Archaean metamorphics against the Gondwana sediments. The coal-bearing sediments are comprised of Gondwana Permian-age sandstones, siltstones, subordinate carbonaceous shales, and six correlated coal seams. The Gondwana sediments are unconformably overlain by Tertiary and Quaternary deposits, against which the coal seams are successively subcropped to the west. Within the structural limits of the basin, approximately 377 Mt coal in-situ has been quantified in the six coal seams that range in depth from 118 to 518 m below surface. Due to the synclinal nature of the deposit, the upper coal seams, designated I to V, occur over diminishing areal extent with decreasing depth. The principal seam of interest is the lowermost Seam VI, with a variable thickness across the deposit from 22 m in the northern part of the deposit to more than 42 m in the southern and eastern areas. Development of the Barapukuria Mine, the country's first coal mine, commenced in 1996 with the construction of two vertical shafts. Coal production from Seam VI began in 2005 and continues at the present time. Seam VI coal is high volatile B bituminous rank. About 34 Mt of coal has been estimated as recoverable resources, utilising descensional multi-slice longwall mining. The mine design and development have been severely

  9. Bilingualism (Ancestral Language Maintenance) among Native American, Vietnamese American, and Hispanic American College Students.

    Science.gov (United States)

    Wharry, Cheryl

    1993-01-01

    A survey of 21 Hispanic, 22 Native American, and 10 Vietnamese American college students found that adoption or maintenance of ancestral language was related to attitudes toward ancestral language, beliefs about parental attitudes, and integrative motivation (toward family and ancestral ethnic group). There were significant differences by gender…

  10. Pacific Standard

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The United States pushes for greater economic integration of the Asia-Pacific region Barack Obama has been an active free trade promoter in recent months. The U.S. president signed free trade agreements with South Korea,

  11. Multiway admixture deconvolution using phased or unphased ancestral panels.

    Science.gov (United States)

    Churchhouse, Claire; Marchini, Jonathan

    2013-01-01

    We describe a novel method for inferring the local ancestry of admixed individuals from dense genome-wide single nucleotide polymorphism data. The method, called MULTIMIX, allows multiple source populations, models population linkage disequilibrium between markers and is applicable to datasets in which the sample and source populations are either phased or unphased. The model is based upon a hidden Markov model of switches in ancestry between consecutive windows of loci. We model the observed haplotypes within each window using a multivariate normal distribution with parameters estimated from the ancestral panels. We present three methods to fit the model-Markov chain Monte Carlo sampling, the Expectation Maximization algorithm, and a Classification Expectation Maximization algorithm. The performance of our method on individuals simulated to be admixed with European and West African ancestry shows it to be comparable to HAPMIX, the ancestry calls of the two methods agreeing at 99.26% of loci across the three parameter groups. In addition to it being faster than HAPMIX, it is also found to perform well over a range of extent of admixture in a simulation involving three ancestral populations. In an analysis of real data, we estimate the contribution of European, West African and Native American ancestry to each locus in the Mexican samples of HapMap, giving estimates of ancestral proportions that are consistent with those previously reported. PMID:23136122

  12. Ancestral gene and "complementary" antibody dominate early ontogeny.

    Science.gov (United States)

    Arend, Peter

    2013-05-01

    According to N.K. Jerne the somatic generation of immune recognition occurs in conjunction with germ cell evolution and precedes the formation of the zygote, i.e. operates before clonal selection. We propose that it is based on interspecies inherent, ancestral forces maintaining the lineage. Murine oogenesis may be offered as a model. So in C57BL/10BL sera an anti-A reactive, mercapto-ethanol sensitive glycoprotein of up to now unknown cellular origin, but exhibiting immunoglobulin M character, presents itself "complementary" to a syngeneic epitope, which encoded by histocompatibility gene A or meanwhile accepted ancestor of the ABO gene family, arises predominantly in ovarian tissue and was detected statistically significant exclusively in polar glycolipids. Reports either on loss, pronounced expressions or de novo appearances of A-type structures in various conditions of accelerated growth like germ cell evolution, wound healing, inflammation and tumor proliferation in man and ABO related animals might show the dynamics of ancestral functions guarantying stem cell fidelity in maturation and tissue renewal processes. Procedures vice versa generating pluripotent stem cells for therapeutical reasons may indicate, that any artificially started growth should somehow pass through the germ line from the beginning, where according to growing knowledge exclusively the oocyte's genome provides a completely channeling ancestral information. In predatory animals such as the modern-day sea anemone, ancestral proteins, particularly those of the p53 gene family govern the reproduction processes, and are active up to the current mammalian female germ line. Lectins, providing the dual function of growth promotion and defense in higher plants, are suggested to represent the evolutionary precursors of the mammalian immunoglobulin M molecules, or protein moiety implying the greatest functional diversity in nature. And apart from any established mammalian genetic tree, a common vetch

  13. Do Pere David's deer lose memories of their ancestral predators?

    Directory of Open Access Journals (Sweden)

    Chunwang Li

    Full Text Available Whether prey retains antipredator behavior after a long period of predator relaxation is an important question in predator-prey evolution. Père David's deer have been raised in enclosures for more than 1200 years and this isolation provides an opportunity to study whether Père David's deer still respond to the cues of their ancestral predators or to novel predators. We played back the sounds of crows (familiar sound and domestic dogs (familiar non-predators, of tigers and wolves (ancestral predators, and of lions (potential naïve predator to Père David's deer in paddocks, and blank sounds to the control group, and videoed the behavior of the deer during the experiment. We also showed life-size photo models of dog, leopard, bear, tiger, wolf, and lion to the deer and video taped their responses after seeing these models. Père David's deer stared at and approached the hidden loudspeaker when they heard the roars of tiger or lion. The deer listened to tiger roars longer, approached to tiger roars more and spent more time staring at the tiger model. The stags were also found to forage less in the trials of tiger roars than that of other sound playbacks. Additionally, it took longer for the deer to restore their normal behavior after they heard tiger roars, which was longer than that after the trial of other sound playbacks. Moreover, the deer were only found to walk away after hearing the sounds of tiger and wolf. Therefore, the tiger was probably the main predator for Père David's deer in ancient time. Our study implies that Père David's deer still retain the memories of the acoustic and visual cues of their ancestral predators in spite of the long term isolation from natural habitat.

  14. Ancestral Origins and Genetic History of Tibetan Highlanders.

    Science.gov (United States)

    Lu, Dongsheng; Lou, Haiyi; Yuan, Kai; Wang, Xiaoji; Wang, Yuchen; Zhang, Chao; Lu, Yan; Yang, Xiong; Deng, Lian; Zhou, Ying; Feng, Qidi; Hu, Ya; Ding, Qiliang; Yang, Yajun; Li, Shilin; Jin, Li; Guan, Yaqun; Su, Bing; Kang, Longli; Xu, Shuhua

    2016-09-01

    The origin of Tibetans remains one of the most contentious puzzles in history, anthropology, and genetics. Analyses of deeply sequenced (30×-60×) genomes of 38 Tibetan highlanders and 39 Han Chinese lowlanders, together with available data on archaic and modern humans, allow us to comprehensively characterize the ancestral makeup of Tibetans and uncover their origins. Non-modern human sequences compose ∼6% of the Tibetan gene pool and form unique haplotypes in some genomic regions, where Denisovan-like, Neanderthal-like, ancient-Siberian-like, and unknown ancestries are entangled and elevated. The shared ancestry of Tibetan-enriched sequences dates back to ∼62,000-38,000 years ago, predating the Last Glacial Maximum (LGM) and representing early colonization of the plateau. Nonetheless, most of the Tibetan gene pool is of modern human origin and diverged from that of Han Chinese ∼15,000 to ∼9,000 years ago, which can be largely attributed to post-LGM arrivals. Analysis of ∼200 contemporary populations showed that Tibetans share ancestry with populations from East Asia (∼82%), Central Asia and Siberia (∼11%), South Asia (∼6%), and western Eurasia and Oceania (∼1%). Our results support that Tibetans arose from a mixture of multiple ancestral gene pools but that their origins are much more complicated and ancient than previously suspected. We provide compelling evidence of the co-existence of Paleolithic and Neolithic ancestries in the Tibetan gene pool, indicating a genetic continuity between pre-historical highland-foragers and present-day Tibetans. In particular, highly differentiated sequences harbored in highlanders' genomes were most likely inherited from pre-LGM settlers of multiple ancestral origins (SUNDer) and maintained in high frequency by natural selection. PMID:27569548

  15. South China connected to north India in Gondwana: sedimentary basin and detrital provenance analyses

    Science.gov (United States)

    Yao, W.; Li, Z. X.; Li, W. X.; Li, X. H.; Yang, J. H.

    2015-12-01

    The paleoposition of South China during the Ediacaran-Silurian is important for understanding the assembly of Gondwana. We report here the tectonostratigraphic evolution of the Ediacaran-Silurian Nanhua foreland basin in South China, and discuss South China's connection with Gondwana and potential tectonic triggers for both the Wuyi-Yunkai orogeny in South China and the Bhimphedian orogeny in north India. The Nanhua basin was involved in a three-stage evolution, which are: Stage 1 (the Ediacaran-Cambrian) recording the start of tectonic subsidence with turbiditic marine clastic deposition, fed by exotic orogens outboard South China; Stage 2 (the Ordovician to earliest-Silurian) featured by migrating depocentres with dominant shallow marine to deltaic clastic deposition, fed by the local Wuyi-Yunkai orogen; and Stage 3 (the Silurian) showing the arrival of depocentre in the Yangtze Block during the waning stage of the Wuyi-Yunkai orogeny with deltaic deposition in the remanent foreland basin. Detrital zircon analyses of the Ediacaran-Silurian sandstones across the Nanhua basin reveal a prominent age population of 1100-900 Ma (with a peak age at ~980 Ma) and moderate populations of Archean-Paleozoic ages, grossly matching that of crystalline and sedimentary rocks in northern India. Zircon isotopes of the Stage 1 samples suggest three Precambrian episodes of juvenile crustal growth at 3.0 Ga, 2.5 Ga and 1.0 Ga, and a major crustal reworking at 580-500 Ma for the source areas, which are constraint to be northwestern India and its surrounding orogens. Together with other evidence, we propose that South China likely collided with northwestern India during the Gondwana assembly, generated the Bhimphedian orogeny in north India and formed two foreland basins on both the north India and South China sides. Far-field stress of the collision triggered the Ordovician-Silurian Wuyi-Yunkai orogeny in South China. The Stage 2-3 samples in the Nanhua basin of South China were shed

  16. Palaeomagnetism of Neoproterozoic glacial rocks of the Huabei Shield: the North China Block in Gondwana

    Science.gov (United States)

    Piper, J. D. A.; Rui, Zhang Qi

    1997-12-01

    A palaeomagnetic study is reported of reddened facies (Fengtai Formation) of Neoproterozoic glacial rocks which underlie Early Cambrian rocks with disconformity in the Huabei (North China/Sino-Korean) Block. The diamictite (preferred age 620-600 Ma) carries a dual polarity remanence residing in hematite of the red matrix. The mean direction derived from 62 samples is {D}/{I} = {205.9}/{- 32.4°} ( α95 = 3.9°) yielding a pole position at 233°E, 62°N. Tests on the matrix deformed beneath dropstones suggest that remanence was fixed before full compaction, although clasts near the base of the formation are largely overprinted. Overlying Early Cambrian sediments of the Houjiashan and Yutaishan formations have a similar remanence also of dual polarity ( {D}/{I} = {205.5}/{- 32.1°}, α95 = 3.9°, 32 samples). The magnetisation in the diamictite is therefore interpreted to have been acquired during loading by the ice sheet and/or the overlying Cambrian succession. Red shales from the Liulaobei Formation (˜890-840 Ma) near the base of the Neoproterozoic succession in the Huabei Block yield a contrasting remanence of {D}/{I} = {59.4}/{75.3°} ( α95 = 7.1°, 19 samples) equivalent to a pole position at 150°E, 43°N. Pole positions from this study accord with Lower-Middle Cambrian poles from the Australian and South China Blocks with North China sited adjacent to northeastern Australia in accordance with recent biogeographic and palaeogeographic models. Although the palaeolatitude derived from the Fengtai diamictite (17°) is Cambrian in age and probably later than the glaciation, the correlation with Australia implies that glaciation in North China took place in low palaeolatitudes (˜20°) and reinforces the view that late Neoproterozoic glaciation, at least at this perimeter of Gondwana, occurred at low latitudes. Neoproterozoic-Cambrian poles from North China, South China and Australia fail to conform to the popular Rodinia reconstruction with the latter blocks

  17. Orientia tsutsugamushi, agent of scrub typhus, displays a single metapopulation with maintenance of ancestral haplotypes throughout continental South East Asia.

    Science.gov (United States)

    Wongprompitak, Patimaporn; Duong, Veasna; Anukool, Wichittra; Sreyrath, Lay; Mai, Trinh Thi Xuan; Gavotte, Laurent; Moulia, Catherine; Cornillot, Emmanuel; Ekpo, Pattama; Suputtamongkol, Yupin; Buchy, Philippe; Frutos, Roger

    2015-04-01

    Orientia tsutsugamushi is the causative agent of scrub typhus, a major cause of febrile illness in rural area of Asia-Pacific region. A multi-locus sequence typing (MLST) analysis was performed on strains isolated from human patients from 3 countries in Southeast Asia: Cambodia, Vietnam and Thailand. The phylogeny of the 56-kDa protein encoding gene was analyzed on the same strains and showed a structured topology with genetically distinct clusters. MLST analysis did not lead to the same conclusion. DNA polymorphism and phylogeny of individual gene loci indicated a significant level of recombination and genetic diversity whereas the ST distribution indicated the presence of isolated patches. No correlation was found with the geographic origin. This work suggests that weak divergence in core genome and ancestral haplotypes are maintained by permanent recombination in mites while the 56-kDa protein gene is diverging in higher speed due to selection by the mammalian immune system. PMID:25577986

  18. A gigantic sarcopterygian (tetrapodomorph lobe-finned fish from the upper Devonian of Gondwana (Eden, New South Wales, Australia.

    Directory of Open Access Journals (Sweden)

    Ben Young

    Full Text Available Edenopteron keithcrooki gen. et sp. nov. is described from the Famennian Worange Point Formation; the holotype is amongst the largest tristichopterids and sarcopterygians documented by semi-articulated remains from the Devonian Period. The new taxon has dentary fangs and premaxillary tusks, features assumed to be derived for large Northern Hemisphere tristichopterids (Eusthenodon, Hyneria, Langlieria. It resembles Eusthenodon in ornament, but is distinguished by longer proportions of the parietal compared to the post-parietal shield, and numerous differences in shape and proportions of other bones. Several characters (accessory vomers in the palate, submandibulars overlapping ventral jaw margin, scales ornamented with widely-spaced deep grooves are recorded only in tristichopterids from East Gondwana (Australia-Antarctica. On this evidence Edenopteron gen. nov. is placed in an endemic Gondwanan subfamily Mandageriinae within the Tristichopteridae; it differs from the nominal genotype Mandageria in its larger size, less pointed skull, shape of the orbits and other skull characters. The hypothesis that tristichopterids evolved in Laurussia and later dispersed into Gondwana, and a derived subgroup of large Late Devonian genera dispersed from Gondwana, is inconsistent with the evidence of the new taxon. Using oldest fossil and most primitive clade criteria the most recent phylogeny resolves South China and Gondwana as areas of origin for all tetrapodomorphs. The immediate outgroup to tristichopterids remains unresolved - either Spodichthys from Greenland as recently proposed, or Marsdenichthys from Gondwana, earlier suggested to be the sister group to all tristichopterids. Both taxa combine two characters that do not co-occur in other tetrapodomorphs (extratemporal bone in the skull; non-cosmoid round scales with an internal boss. Recently both 'primitive' and 'derived' tristichopterids have been discovered in the late Middle Devonian of both

  19. Record of Lower Gondwana megafloral assemblage from Lower Kamthi Formation of Ib River Coalfield, Orissa, India

    Indian Academy of Sciences (India)

    Shreerup Goswami

    2006-03-01

    Recent investigations carried out in the Ib River Coalfield, Mahanadi Master Basin, Orissa, identified some fossiliferous beds in the Lower Gondwana deposits. Two exposures of the Lower Kamthi Formation yielded diverse and abundant plant remains, which include Neomariopteris, Vertebraria, and a scale leaf along with 14 Glossopteris species otherwise mapped as Barren Measures and Upper Kamthi formations. Glossopteris indica dominates the flora (22.78%) followed by G. communis (17.72%) and G. browniana (13.92%). Based on megafloral assemblages, different beds exposed at Gopalpur and Laxamanpur Pahar are assigned here to the Lower Kamthi Formation (Late Permian). The floristic composition suggests that a warm and humid climate prevailed during the Late Permian. The status of the Kamthi Formation in the Ib River Coalfield has been redefined in the present study.

  20. Evolution of the APWP for Gondwana: constraints based on the geology of eastern Australia

    Science.gov (United States)

    Briden, J. C.; McElhinny, M. W.

    2004-12-01

    The many iterations of the APWP for Gondwana over the past 40 years will be reviewed. They involve all the uncertainties that challenge the determination of the correct record: nature of NRM; age and correlation; geography and history of tectonic units etc. Most arguments about the Paleozoic section of this path depend upon the interpretation of results from the various terranes of eastern Australia. The two extreme views are either that none of the results from eastern Australia can be used for APWP definition or that all of them can be used. The terrane geology of eastern Australia is now reasonably well known and the paleomagnetic results can be placed in an appropriate terrane concept. This suggests that the Molong-Monaro terrane, where most results come from, was certainly accreted to the main craton by the Middle Devonian and probably by the Early Devonian. Early Devonian palaemagnetric results from the north and south of eastern Australia confirm this to be the case. However, the often used Late Carboniferous results from glacial horizons in eastern Australia are from the New England Fold Belt, where accretion to the main craton may not have been completed until the Middle Triassic. Results from this region now also confirm this to be the case. Both the geological setting and paleomagnetic results now confirm that the South Pole APWP makes a rapid transition from North Africa to south of South Africa between the Late Ordovician (455 Ma) and the Early Devonian (405 Ma). This places Bolivia and adjacent regions of South America near the south pole in Silurian times, a position supported by sedimentological evidence for glaciation in Bolivia at that time. The pole then loops back across southwest Gondwana to reach central Africa by the Early Carboniferous.

  1. Paleomagnetism of the Newcastle Range, northern Queensland: Eastern Gondwana in the Late Paleozoic

    Science.gov (United States)

    Anderson, Kari L.; Lackie, Mark A.; Clark, David A.; Schmidt, Phil W.

    2003-06-01

    The Newcastle Range is an extensive (2500 km2) and well-exposed caldera system erupted on the trailing edge of Eastern Gondwana between 325 and 295 Ma. Paleomagnetic samples were collected from ignimbrites and associated microgranitoid intrusions from the central, northern and southern calderas from which three components of magnetization are recognized. Component 1 is considered to be a viscous magnetization acquired during the Brunhes Chron. A presumed Permian component, C2, is found in seven paleomagnetic sites with a mean pole at 30.9°S, 139.7°E (K = 13.9, A95 = 16.8°, ASD = 21.7°), agreeing with previously reported Permian data from Australia. Carboniferous units have a well-defined characteristic component, C3, distinguished by dual polarity (predominantly reversed) and moderate to steep inclination directions. Paleomagnetic polarities in the Newcastle Range Volcanics are formation dependent and new constraints on the timing of Carboniferous volcanism (˜325-317 Ma) are consistent with recent reanalysis of the base of the Permo-Carboniferous Reversed Superchron (PCRS). A mean paleomagnetic pole, calculated from 15 VGPs, lies at 63.4°S, 125°E (K = 26.22, A95 = 7.6°, ASD = 15.8°), suggesting that Australia remained at midlatitudes into the Middle Carboniferous. This paleomagnetic pole is consistent with similarly aged poles from Western Gondwana, the conformity of which indicates contributions from nondipole components of the Earth's paleofield were probably not significant in the time immediately preceding the PCRS.

  2. Fast phylogeny reconstruction through learning of ancestral sequences

    CERN Document Server

    Mihaescu, Radu; Rao, Satish

    2008-01-01

    Given natural limitations on the length DNA sequences, designing phylogenetic reconstruction methods which are reliable under limited information is a crucial endeavor. There have been two approaches to this problem: reconstructing partial but reliable information about the tree (\\cite{Mo07, DMR08,DHJ06,GMS08}), and reaching "deeper" in the tree through reconstruction of ancestral sequences. In the latter category, \\cite{DMR06} settled an important conjecture of M.Steel, showing that, under the CFN model of evolution, all trees on $n$ leaves with edge lengths bounded by the Ising model phase transition can be recovered with high probability from genomes of length $O(\\log n)$ with a polynomial time algorithm. Their methods had a running time of $O(n^{10})$. Here we enhance our methods from \\cite{DHJ06} with the learning of ancestral sequences and provide an algorithm for reconstructing a sub-forest of the tree which is reliable given available data, without requiring a-priori known bounds on the edge lengths o...

  3. The ancestral process of long term seed bank models

    CERN Document Server

    Blath, Jochen; Kurt, Noemi; Spanò, Dario

    2012-01-01

    We present a new model for the evolution of genetic types in the presence of so-called seed banks, i.e., where individuals may obtain their genetic type from ancestors which have lived in the near as well as the very far past. The classical Wright-Fisher model, as well as a seed bank model with bounded age distribution considered by Kaj, Krone and Lascoux (2001) are special cases of our model. We discern three parameter regimes of the seed bank age distribution, which lead to substantially different behaviour in terms of genetic variability, in particular with respect to fixation of types and time to the most recent common ancestor. We prove that for age distributions with finite mean, the rescaled ancestral process converges to a time-changed Kingman coalescent, while in the case of infinite mean, ancestral lineages might not merge at all with positive probability. Further, we present a construction of the forward in time process in equilibrium. The mathematical methods are based on renewal theory, the urn p...

  4. Global Alignment of Molecular Sequences via Ancestral State Reconstruction

    CERN Document Server

    Andoni, Alexandr; Hassidim, Avinatan; Roch, Sebastien

    2009-01-01

    Molecular phylogenetic techniques do not generally account for such common evolutionary events as site insertions and deletions (known as indels). Instead tree building algorithms and ancestral state inference procedures typically rely on substitution-only models of sequence evolution. In practice these methods are extended beyond this simplified setting with the use of heuristics that produce global alignments of the input sequences--an important problem which has no rigorous model-based solution. In this paper we consider a new version of the multiple sequence alignment in the context of stochastic indel models. More precisely, we introduce the following {\\em trace reconstruction problem on a tree} (TRPT): a binary sequence is broadcast through a tree channel where we allow substitutions, deletions, and insertions; we seek to reconstruct the original sequence from the sequences received at the leaves of the tree. We give a recursive procedure for this problem with strong reconstruction guarantees at low mut...

  5. Ancestral genome inference using a genetic algorithm approach.

    Science.gov (United States)

    Gao, Nan; Yang, Ning; Tang, Jijun

    2013-01-01

    Recent advancement of technologies has now made it routine to obtain and compare gene orders within genomes. Rearrangements of gene orders by operations such as reversal and transposition are rare events that enable researchers to reconstruct deep evolutionary histories. An important application of genome rearrangement analysis is to infer gene orders of ancestral genomes, which is valuable for identifying patterns of evolution and for modeling the evolutionary processes. Among various available methods, parsimony-based methods (including GRAPPA and MGR) are the most widely used. Since the core algorithms of these methods are solvers for the so called median problem, providing efficient and accurate median solver has attracted lots of attention in this field. The "double-cut-and-join" (DCJ) model uses the single DCJ operation to account for all genome rearrangement events. Because mathematically it is much simpler than handling events directly, parsimony methods using DCJ median solvers has better speed and accuracy. However, the DCJ median problem is NP-hard and although several exact algorithms are available, they all have great difficulties when given genomes are distant. In this paper, we present a new algorithm that combines genetic algorithm (GA) with genomic sorting to produce a new method which can solve the DCJ median problem in limited time and space, especially in large and distant datasets. Our experimental results show that this new GA-based method can find optimal or near optimal results for problems ranging from easy to very difficult. Compared to existing parsimony methods which may severely underestimate the true number of evolutionary events, the sorting-based approach can infer ancestral genomes which are much closer to their true ancestors. The code is available at http://phylo.cse.sc.edu. PMID:23658708

  6. Paleomagnetic constraints on the Mesozoic drift of the Lhasa terrane (Tibet) from Gondwana to Eurasia

    Science.gov (United States)

    Li, Zhenyu; Lippert, Peter; Ding, Lin; Song, Peiping; Yue, Yahui; van Hinsbergen, Douwe

    2016-04-01

    The Mesozoic plate tectonic history of Gondwana-derived crustal blocks of the Tibetan Plateau is hotly debated, but so far, paleomagnetic constraints quantifying their paleolatitudinal drift history remain sparse. Here, we compile existing data published mainly in Chinese literature and provide a new, high-quality, well-dated paleomagnetic pole from the ˜180 Ma Sangri Group volcanics of the Lhasa terrane. Our Sangri Group pole is calculated from pre-folding characteristic remanent magnetizations carried by thermoremanent magnetizations in low-Ti titanomagnetite and titanohematite in basalts and basaltic andesites that we have dated using zircon U-Pb geochronology. Forty-two lava sites (68%) meet our quality criteria and provide an average direction of D±ΔD = 341.9±3.4° , I±ΔI = -13.3±6.5° , A95 = 3.4, K = 42.9, n=42, corresponding to a paleolatitude of ˜6° S. The A95 value falls within the n-dependent confidence envelope of Deenen et al. (2011) (A95min=2.7; A95max=7.8), indicating that the data scatter can be straightforwardly explained by paleosecular variation of the paleomagnetic field alone. In addition, positive fold tests are consistent with a pre-folding remanence acquisition. Our new pole confirms a trend in existing data of variable quality that suggests the Lhasa terrane rifted from Gondwana in Late Triassic rather than Permian time, as widely perceived. A total northward drift of ˜ 4500 km between ˜220 and ˜130 Ma yields a reasonable average paleolatitudinal plate motion rate of 5 cm/yr. Our results are consistent with both an Indian or an Australian original position of the Lhasa terrane and cannot directly discriminate between these two interpretations. Nonetheless, we show that paleomagnetic data can provide a strong constraint on Mesozoic plate kinematics of the Tethyan realm. Our study also underscores the need for new, high-quality and well-dated paleomagnetic poles from the Paleozoic and Mesozoic of the Tibetan terranes.

  7. Tectonic evolution of the Iberian margin of Gondwana and of correlative regions: A celebration of the career of Cecilio Quesada

    Science.gov (United States)

    Murphy, J. Brendan; Nance, R. Damian; Johnston, Stephen T.

    2016-06-01

    This special issue celebrates the career of an exceptional geologist, Cecilio Quesada, an icon of Iberian geology who "retired" in 2014. It is an outcome of a symposium to honour Cecilio's career held in July 2014 in Madrid during the Gondwana 15 conference. The conference was hosted by the Instituto Geológico y Minero de España (IGME), Cecilio's employer since 1976.

  8. Carboniferous granites on the northern margin of Gondwana, Anatolide-Tauride Block, Turkey - Evidence for southward subduction of Paleotethys

    Science.gov (United States)

    Candan, O.; Akal, C.; Koralay, O. E.; Okay, A. I.; Oberhänsli, R.; Prelević, D.; Mertz-Kraus, R.

    2016-06-01

    Carboniferous metagranites with U-Pb zircon crystallization ages of 331-315 Ma crop out in the Afyon zone in the northern margin of the Anatolide-Tauride Block, which is commonly regarded as part of Gondwana during the Late Palaeozoic. They are peraluminous, calc-alkaline and are characterized by increase in Rb and Ba, decrease in Nb-Ta, and enrichment in Sr and high LILE/HFSE ratios compatible with a continental arc setting. The metagranites intrude a metasedimentary sequence of phyllite, metaquartzite and marble; both the Carboniferous metagranites and metasedimentary rocks are overlain unconformably by Lower Triassic metaconglomerates, metavolcanics and Upper Triassic to Cretaceous recrystallized limestones. The low-grade metamorphism and deformation occurred at the Cretaceous-Tertiary boundary. There is no evidence for Carboniferous deformation and metamorphism in the region. Carboniferous arc-type granites and previously described Carboniferous subduction-accretion complexes on the northern margin of the Anatolide-Tauride Block suggest southward subduction of Paleotethys under Gondwana during the Carboniferous. Considering the Variscan-related arc granites in Pelagonian and Sakarya zones on the active southern margin of Laurasia, a dual subduction of Paleotethys can be envisaged between Early Carboniferous and Late Permian. However, the southward subduction was short-lived and by the Late Permian the Gondwana margin became passive.

  9. Geophysical exploration for coal-bearing Gondwana basins in the states of West Bengal and Bihar in northeast India

    Energy Technology Data Exchange (ETDEWEB)

    Saha, S.N.; Roy, A.K.; Brahman, C.V.; Sastry, C.B.K.; De, M.K.

    1992-10-01

    The states of West Bengal and Bihar in northeast India are known to bear 'A' grade coal seams within Gondwana basins. An alluvium-covered area to the north of the Ajay river was considered to be prospective for the exploration of coal. Gravity and magnetic surveys were mainly carried out over an area of 1900 km[sup 2] with resistivity soundings taken at selected places. Gondwana sediments lying over basement subbasins are prospective areas for the exploration of coal. The gravity survey interpreted an 8-km wide and 20-km long depression known as the Pachami basin. This basin was drilled at several places and thick 'A' grade coal seams were intersected. The gravity survey broadly outlined the Pachami basin and several other basement depressions through gravity low contour closures. A forward modelling of a profile across the Pachami basin indicated a maximum depth of about 1.3 km to the basement at its deepest part. The magnetic map was vitiated through the presence of fluctuating high amplitude and high wavenumber anomalies due to a thick blanket of trap lying above the Gondwana sediments. Selected resistivity soundings could approximately interpret the shallow-basement depths, and the thickness and depths of the overlying trap.

  10. Estimation of the ancestral effective population sizes of African great apes under different selection regimes.

    Science.gov (United States)

    Schrago, Carlos G

    2014-08-01

    Reliable estimates of ancestral effective population sizes are necessary to unveil the population-level phenomena that shaped the phylogeny and molecular evolution of the African great apes. Although several methods have previously been applied to infer ancestral effective population sizes, an analysis of the influence of the selective regime on the estimates of ancestral demography has not been thoroughly conducted. In this study, three independent data sets under different selective regimes were used were composed to tackle this issue. The results showed that selection had a significant impact on the estimates of ancestral effective population sizes of the African great apes. The inference of the ancestral demography of African great apes was affected by the selection regime. The effects, however, were not homogeneous along the ancestral populations of great apes. The effective population size of the ancestor of humans and chimpanzees was more impacted by the selection regime when compared to the same parameter in the ancestor of humans, chimpanzees and gorillas. Because the selection regime influenced the estimates of ancestral effective population size, it is reasonable to assume that a portion of the discrepancy found in previous studies that inferred the ancestral effective population size may be attributable to the differential action of selection on the genes sampled.

  11. CO 2 degassing and trapping during hydrothermal cycles related to Gondwana rifting in eastern Australia

    Science.gov (United States)

    Uysal, I. Tonguç; Golding, Suzanne D.; Bolhar, Robert; Zhao, Jian-xin; Feng, Yue-xing; Baublys, Kim A.; Greig, Alan

    2011-10-01

    Intensive carbonate and clay mineral authigenesis took place throughout the Late Permian Bowen-Gunnedah-Sydney basin system in eastern Australia. We conducted isotopic and trace element analyses of carbonate and clay minerals from clastic sedimentary rocks of the Gunnedah Basin and the Denison Trough in the Bowen Basin. Rb-Sr isochron age data of the illitic clays are consistent with episodic hydrothermal fluid flow events that occurred in association with Gondwana rifting accompanied by alkaline magmatism at ˜85 Ma and ˜95 Ma. Stable isotope data of carbonate and clay minerals from the Gunnedah Basin are indicative of meteoric waters from a high-latitude environment as the main fluid source, whereas trace element, Sr and Nd isotope data highlight mixing of meteoric fluids with magmatic and/or crustal components, with a possible input from marine carbonates for some samples. Trace metals, oxygen and strontium isotopes of dawsonites from the Denison Trough are interpreted to have been mobilised by fluids that interacted with evolved clastic sedimentary and marine carbonate end members. According to the carbon isotope data, CO 2 for calcite and ankerite precipitation was sourced mainly from thermal degradation of organic matter and magmatism, whereas the CO 2 used for dawsonite formation is inferred to have been derived from magmatic and marine sources. In the low permeability environments (particularly in coal seams), the increasing accumulation and oversaturation of CO 2 particularly promote the precipitation of dawsonite.

  12. Pull-apart origin of the Satpura Gondwana basin, central India

    Indian Academy of Sciences (India)

    Chandan Chakraborty; Sanjoy Kumar Ghosh

    2005-06-01

    The Gondwana basins of peninsular India are traditionally considered as extensional-rift basins due to the overwhelming evidence of fault-controlled synsedimentary subsidence. These basins indeed originated under a bulk extensional tectonic regime, due to failure of the attenuated crust along pre-existing zones of weakness inherited from Precambrian structural fabrics. However, disposition of the basins and their structural architecture indicate that the kinematics of all the basins cannot be extensional. To maintain kinematic compatibility with other basins as well as the bulk lateral extension, some basins ought to be of strike-slip origin. The disposition, shape and structural architecture of the Satpura basin, central India suggest that the basin could be a pull-apart basin that developed above a releasing jog of a left-stepping strike-slip fault system defined by the Son-Narmada south fault and Tapti north fault in consequence to sinistral displacement along WSW-ENE. Development of a sedimentary basin under the above-mentioned kinematic condition was simulated in model experiments with sandpack. The shape, relative size, stratigraphic and structural architecture of the experimental basin tally with that of the Satpura basin. The experimental results also provide insights into the tectono-sedimentary evolution of the Satpura basin in particular and pull-apart basins in general.

  13. EVOLUTION. A four-legged snake from the Early Cretaceous of Gondwana.

    Science.gov (United States)

    Martill, David M; Tischlinger, Helmut; Longrich, Nicholas R

    2015-07-24

    Snakes are a remarkably diverse and successful group today, but their evolutionary origins are obscure. The discovery of snakes with two legs has shed light on the transition from lizards to snakes, but no snake has been described with four limbs, and the ecology of early snakes is poorly known. We describe a four-limbed snake from the Early Cretaceous (Aptian) Crato Formation of Brazil. The snake has a serpentiform body plan with an elongate trunk, short tail, and large ventral scales suggesting characteristic serpentine locomotion, yet retains small prehensile limbs. Skull and body proportions as well as reduced neural spines indicate fossorial adaptation, suggesting that snakes evolved from burrowing rather than marine ancestors. Hooked teeth, an intramandibular joint, a flexible spine capable of constricting prey, and the presence of vertebrate remains in the guts indicate that this species preyed on vertebrates and that snakes made the transition to carnivory early in their history. The structure of the limbs suggests that they were adapted for grasping, either to seize prey or as claspers during mating. Together with a diverse fauna of basal snakes from the Cretaceous of South America, Africa, and India, this snake suggests that crown Serpentes originated in Gondwana.

  14. New Late Permian paleomagnetic data from Argentina: Refinement of the apparent polar wander path of Gondwana

    Science.gov (United States)

    Domeier, Mathew; van der Voo, Rob; Tohver, Eric; Tomezzoli, Renata N.; Vizan, Haroldo; Torsvik, Trond H.; Kirshner, Jordan

    2011-07-01

    The Late Paleozoic-Early Mesozoic apparent polar wander path of Gondwana is largely constructed from relatively old paleomagnetic results, many of which are considered unreliable by modern standards. Paleomagnetic results derived from sedimentary sequences, which are generally poorly dated and prone to inclination shallowing, are especially common. Here we report the results of a joint paleomagnetic-geochronologic study of a volcanic complex in central Argentina. U-Pb dating of zircons has yielded a robust age estimate of 263.0 +1.6/-2.0 Ma for the complex. Paleomagnetic analysis has revealed a pretilting (primary Permian) magnetization with dual polarities. Rock magnetic experiments have identified pseudo-single domain (titano)magnetite and hematite as the mineralogic carriers of the magnetization. Lightning-induced isothermal remagnetizations are widespread in the low-coercivity magnetic carriers. The resulting paleomagnetic pole is 80.1°S, 349.0°E, A95 = 3.3°, N = 35, and it improves a Late Permian mean pole calculated from a filtered South American paleomagnetic data set. More broadly, this new, high-quality, igneous-based paleomagnetic pole falls between the previously distinct Late Permian segments of the Laurussian and Gondwanan apparent polar wander paths, suggesting that the long-recognized disparity between these large paleomagnetic data sets may be primarily due to the inclusion of low-quality or systemically biased data.

  15. Color vision of ancestral organisms of higher primates.

    Science.gov (United States)

    Nei, M; Zhang, J; Yokoyama, S

    1997-06-01

    The color vision of mammals is controlled by photosensitive proteins called opsins. Most mammals have dichromatic color vision, but hominoids and Old World (OW) monkeys enjoy trichromatic vision, having the blue-, green-, and red-sensitive opsin genes. Most New World (NW) monkeys are either dichromatic or trichromatic, depending on the sex and genotype. Trichromacy in higher primates is believed to have evolved to facilitate the detection of yellow and red fruits against dappled foliage, but the process of evolutionary change from dichromacy to trichromacy is not well understood. Using the parsimony and the newly developed Bayesian methods, we inferred the amino acid sequences of opsins of ancestral organisms of higher primates. The results suggest that the ancestors of OW and NW monkeys lacked the green gene and that the green gene later evolved from the red gene. The fact that the red/green opsin gene has survived the long nocturnal stage of mammalian evolution and that it is under strong purifying selection in organisms that live in dark environments suggests that this gene has another important function in addition to color vision, probably the control of circadian rhythms. PMID:9190062

  16. Allatotropin: An Ancestral Myotropic Neuropeptide Involved in Feeding

    Science.gov (United States)

    Alzugaray, María Eugenia; Adami, Mariana Laura; Diambra, Luis Anibal; Hernandez-Martinez, Salvador; Damborenea, Cristina; Noriega, Fernando Gabriel; Ronderos, Jorge Rafael

    2013-01-01

    Background Cell-cell interactions are a basic principle for the organization of tissues and organs allowing them to perform integrated functions and to organize themselves spatially and temporally. Peptidic molecules secreted by neurons and epithelial cells play fundamental roles in cell-cell interactions, acting as local neuromodulators, neurohormones, as well as endocrine and paracrine messengers. Allatotropin (AT) is a neuropeptide originally described as a regulator of Juvenile Hormone synthesis, which plays multiple neural, endocrine and myoactive roles in insects and other organisms. Methods A combination of immunohistochemistry using AT-antibodies and AT-Qdot nanocrystal conjugates was used to identify immunoreactive nerve cells containing the peptide and epithelial-muscular cells targeted by AT in Hydra plagiodesmica. Physiological assays using AT and AT- antibodies revealed that while AT stimulated the extrusion of the hypostome in a dose-response fashion in starved hydroids, the activity of hypostome in hydroids challenged with food was blocked by treatments with different doses of AT-antibodies. Conclusions AT antibodies immunolabeled nerve cells in the stalk, pedal disc, tentacles and hypostome. AT-Qdot conjugates recognized epithelial-muscular cell in the same tissues, suggesting the existence of anatomical and functional relationships between these two cell populations. Physiological assays indicated that the AT-like peptide is facilitating food ingestion. Significance Immunochemical, physiological and bioinformatics evidence advocates that AT is an ancestral neuropeptide involved in myoregulatory activities associated with meal ingestion and digestion. PMID:24143240

  17. A new Cretaceous terrestrial ecosystem from Gondwana with the description of a new sauropod dinosaur

    Directory of Open Access Journals (Sweden)

    Jorge O. Calvo

    2007-09-01

    Full Text Available A unique site at the northern area of Patagonia (Neuquén, Argentina reveals a terrestrial ecosystem preserved in a detail never reported before in a Late Cretaceous deposit. An extraordinary diversity and abundance of fossils was found concentrated in a 0.5 m horizon in the same quarry, including a new titanosaur sauropod, Futalognkosaurus dukei n.gen., n.sp, which is the most complete giant dinosaur known so far. Several plant leaves, showing a predominance of angiosperms over gymnosperms that likely constituted the diet of F. dukei were found too. Other dinosaurs (sauropods, theropods, ornithopods, crocodylomorphs, pterosaurs, and fishes were also discovered, allowing a partial reconstruction of this Gondwanan continental ecosystem.Um depósito fóssil na região norte da Patagônia (Neuquén, Argentina revela um ecossistema nunca antes registrado a este nível de detalhes em depósitos do Cretáceo Superior. Uma diversidade e abundância extraordinária de fósseis encontra-se concentrada em uma camada de 0,5 m no mesmo sítio, incluindo um novo saurópodo titanossaurídeo, Futalognkosaurus dukei n. gen, n. sp., que é o mais completo dinossauro gigante encontrado até a presente data. Foram descobertas váriasfolhas de plantas indicando a predominância de angiospermas sobre gimnospermas que possivelmente formavam a base da dieta de F. dukei. Outros dinossauros (saurópodes, terópodes, ornitópodes, crocodilomorfos, pterossauros e peixes foram também encontrados possibilitando a reconstrução parcialdeste ecossistema continental do Gondwana.

  18. Reconstructing the ancestral butterfly eye: focus on the opsins.

    Science.gov (United States)

    Briscoe, Adriana D

    2008-06-01

    The eyes of butterflies are remarkable, because they are nearly as diverse as the colors of wings. Much of eye diversity can be traced to alterations in the number, spectral properties and spatial distribution of the visual pigments. Visual pigments are light-sensitive molecules composed of an opsin protein and a chromophore. Most butterflies have eyes that contain visual pigments with a wavelength of peak absorbance, lambda(max), in the ultraviolet (UV, 300-400 nm), blue (B, 400-500 nm) and long wavelength (LW, 500-600 nm) part of the visible light spectrum, respectively, encoded by distinct UV, B and LW opsin genes. In the compound eye of butterflies, each individual ommatidium is composed of nine photoreceptor cells (R1-9) that generally express only one opsin mRNA per cell, although in some butterfly eyes there are ommatidial subtypes in which two opsins are co-expressed in the same photoreceptor cell. Based on a phylogenetic analysis of opsin cDNAs from the five butterfly families, Papilionidae, Pieridae, Nymphalidae, Lycaenidae and Riodinidae, and comparative analysis of opsin gene expression patterns from four of the five families, I propose a model for the patterning of the ancestral butterfly eye that is most closely aligned with the nymphalid eye. The R1 and R2 cells of the main retina expressed UV-UV-, UV-B- or B-B-absorbing visual pigments while the R3-9 cells expressed a LW-absorbing visual pigment. Visual systems of existing butterflies then underwent an adaptive expansion based on lineage-specific B and LW opsin gene multiplications and on alterations in the spatial expression of opsins within the eye. Understanding the molecular sophistication of butterfly eye complexity is a challenge that, if met, has broad biological implications.

  19. The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

    Energy Technology Data Exchange (ETDEWEB)

    Elkins, James G.; Kunin, Victor; Anderson, Iain; Barry, Kerrie; Goltsman, Eugene; Lapidus, Alla; Hedlund, Brian; Hugenholtz, Phil; Kyrpides, Nikos; Graham, David; Keller, Martin; Wanner, Gerhard; Richardson, Paul; Stetter, Karl O.

    2007-05-01

    Based on conserved cellular properties, all life on Earth can be grouped into different phyla which belong to the primary domains Bacteria, Archaea, and Eukarya. However, tracing back their evolutionary relationships has been impeded by horizontal gene transfer and gene loss. Within the Archaea, the kingdoms Crenarchaeota and Euryarchaeota exhibit a profound divergence. In order to elucidate the evolution of these two major kingdoms, representatives of more deeply diverged lineages would be required. Based on their environmental small subunit ribosomal (ss RNA) sequences, the Korarchaeota had been originally suggested to have an ancestral relationship to all known Archaea although this assessment has been refuted. Here we describe the cultivation and initial characterization of the first member of the Korarchaeota, highly unusual, ultrathin filamentous cells about 0.16 {micro}m in diameter. A complete genome sequence obtained from enrichment cultures revealed an unprecedented combination of signature genes which were thought to be characteristic of either the Crenarchaeota, Euryarchaeota, or Eukarya. Cell division appears to be mediated through a FtsZ-dependent mechanism which is highly conserved throughout the Bacteria and Euryarchaeota. An rpb8 subunit of the DNA-dependent RNA polymerase was identified which is absent from other Archaea and has been described as a eukaryotic signature gene. In addition, the representative organism possesses a ribosome structure typical for members of the Crenarchaeota. Based on its gene complement, this lineage likely diverged near the separation of the two major kingdoms of Archaea. Further investigations of these unique organisms may shed additional light onto the evolution of extant life.

  20. Genome-wide inference of ancestral recombination graphs.

    Science.gov (United States)

    Rasmussen, Matthew D; Hubisz, Melissa J; Gronau, Ilan; Siepel, Adam

    2014-01-01

    The complex correlation structure of a collection of orthologous DNA sequences is uniquely captured by the "ancestral recombination graph" (ARG), a complete record of coalescence and recombination events in the history of the sample. However, existing methods for ARG inference are computationally intensive, highly approximate, or limited to small numbers of sequences, and, as a consequence, explicit ARG inference is rarely used in applied population genomics. Here, we introduce a new algorithm for ARG inference that is efficient enough to apply to dozens of complete mammalian genomes. The key idea of our approach is to sample an ARG of [Formula: see text] chromosomes conditional on an ARG of [Formula: see text] chromosomes, an operation we call "threading." Using techniques based on hidden Markov models, we can perform this threading operation exactly, up to the assumptions of the sequentially Markov coalescent and a discretization of time. An extension allows for threading of subtrees instead of individual sequences. Repeated application of these threading operations results in highly efficient Markov chain Monte Carlo samplers for ARGs. We have implemented these methods in a computer program called ARGweaver. Experiments with simulated data indicate that ARGweaver converges rapidly to the posterior distribution over ARGs and is effective in recovering various features of the ARG for dozens of sequences generated under realistic parameters for human populations. In applications of ARGweaver to 54 human genome sequences from Complete Genomics, we find clear signatures of natural selection, including regions of unusually ancient ancestry associated with balancing selection and reductions in allele age in sites under directional selection. The patterns we observe near protein-coding genes are consistent with a primary influence from background selection rather than hitchhiking, although we cannot rule out a contribution from recurrent selective sweeps. PMID:24831947

  1. Genome-wide inference of ancestral recombination graphs.

    Directory of Open Access Journals (Sweden)

    Matthew D Rasmussen

    Full Text Available The complex correlation structure of a collection of orthologous DNA sequences is uniquely captured by the "ancestral recombination graph" (ARG, a complete record of coalescence and recombination events in the history of the sample. However, existing methods for ARG inference are computationally intensive, highly approximate, or limited to small numbers of sequences, and, as a consequence, explicit ARG inference is rarely used in applied population genomics. Here, we introduce a new algorithm for ARG inference that is efficient enough to apply to dozens of complete mammalian genomes. The key idea of our approach is to sample an ARG of [Formula: see text] chromosomes conditional on an ARG of [Formula: see text] chromosomes, an operation we call "threading." Using techniques based on hidden Markov models, we can perform this threading operation exactly, up to the assumptions of the sequentially Markov coalescent and a discretization of time. An extension allows for threading of subtrees instead of individual sequences. Repeated application of these threading operations results in highly efficient Markov chain Monte Carlo samplers for ARGs. We have implemented these methods in a computer program called ARGweaver. Experiments with simulated data indicate that ARGweaver converges rapidly to the posterior distribution over ARGs and is effective in recovering various features of the ARG for dozens of sequences generated under realistic parameters for human populations. In applications of ARGweaver to 54 human genome sequences from Complete Genomics, we find clear signatures of natural selection, including regions of unusually ancient ancestry associated with balancing selection and reductions in allele age in sites under directional selection. The patterns we observe near protein-coding genes are consistent with a primary influence from background selection rather than hitchhiking, although we cannot rule out a contribution from recurrent selective

  2. Ancestral Genomes, Sex, and the Population Structure of Trypanosoma cruzi.

    Directory of Open Access Journals (Sweden)

    2006-03-01

    Full Text Available Acquisition of detailed knowledge of the structure and evolution of Trypanosoma cruzi populations is essential for control of Chagas disease. We profiled 75 strains of the parasite with five nuclear microsatellite loci, 24Salpha RNA genes, and sequence polymorphisms in the mitochondrial cytochrome oxidase subunit II gene. We also used sequences available in GenBank for the mitochondrial genes cytochrome B and NADH dehydrogenase subunit 1. A multidimensional scaling plot (MDS based in microsatellite data divided the parasites into four clusters corresponding to T. cruzi I (MDS-cluster A, T. cruzi II (MDS-cluster C, a third group of T. cruzi strains (MDS-cluster B, and hybrid strains (MDS-cluster BH. The first two clusters matched respectively mitochondrial clades A and C, while the other two belonged to mitochondrial clade B. The 24Salpha rDNA and microsatellite profiling data were combined into multilocus genotypes that were analyzed by the haplotype reconstruction program PHASE. We identified 141 haplotypes that were clearly distributed into three haplogroups (X, Y, and Z. All strains belonging to T. cruzi I (MDS-cluster A were Z/Z, the T. cruzi II strains (MDS-cluster C were Y/Y, and those belonging to MDS-cluster B (unclassified T. cruzi had X/X haplogroup genotypes. The strains grouped in the MDS-cluster BH were X/Y, confirming their hybrid character. Based on these results we propose the following minimal scenario for T. cruzi evolution. In a distant past there were at a minimum three ancestral lineages that we may call, respectively, T. cruzi I, T. cruzi II, and T. cruzi III. At least two hybridization events involving T. cruzi II and T. cruzi III produced evolutionarily viable progeny. In both events, the mitochondrial recipient (as identified by the mitochondrial clade of the hybrid strains was T. cruzi II and the mitochondrial donor was T. cruzi III.

  3. β-Propeller blades as ancestral peptides in protein evolution.

    Directory of Open Access Journals (Sweden)

    Klaus O Kopec

    Full Text Available Proteins of the β-propeller fold are ubiquitous in nature and widely used as structural scaffolds for ligand binding and enzymatic activity. This fold comprises between four and twelve four-stranded β-meanders, the so called blades that are arranged circularly around a central funnel-shaped pore. Despite the large size range of β-propellers, their blades frequently show sequence similarity indicative of a common ancestry and it has been proposed that the majority of β-propellers arose divergently by amplification and diversification of an ancestral blade. Given the structural versatility of β-propellers and the hypothesis that the first folded proteins evolved from a simpler set of peptides, we investigated whether this blade may have given rise to other folds as well. Using sequence comparisons, we identified proteins of four other folds as potential homologs of β-propellers: the luminal domain of inositol-requiring enzyme 1 (IRE1-LD, type II β-prisms, β-pinwheels, and WW domains. Because, with increasing evolutionary distance and decreasing sequence length, the statistical significance of sequence comparisons becomes progressively harder to distinguish from the background of convergent similarities, we complemented our analyses with a new method that evaluates possible homology based on the correlation between sequence and structure similarity. Our results indicate a homologous relationship of IRE1-LD and type II β-prisms with β-propellers, and an analogous one for β-pinwheels and WW domains. Whereas IRE1-LD most likely originated by fold-changing mutations from a fully formed PQQ motif β-propeller, type II β-prisms originated by amplification and differentiation of a single blade, possibly also of the PQQ type. We conclude that both β-propellers and type II β-prisms arose by independent amplification of a blade-sized fragment, which represents a remnant of an ancient peptide world.

  4. β-Propeller Blades as Ancestral Peptides in Protein Evolution

    Science.gov (United States)

    Kopec, Klaus O.; Lupas, Andrei N.

    2013-01-01

    Proteins of the β-propeller fold are ubiquitous in nature and widely used as structural scaffolds for ligand binding and enzymatic activity. This fold comprises between four and twelve four-stranded β-meanders, the so called blades that are arranged circularly around a central funnel-shaped pore. Despite the large size range of β-propellers, their blades frequently show sequence similarity indicative of a common ancestry and it has been proposed that the majority of β-propellers arose divergently by amplification and diversification of an ancestral blade. Given the structural versatility of β-propellers and the hypothesis that the first folded proteins evolved from a simpler set of peptides, we investigated whether this blade may have given rise to other folds as well. Using sequence comparisons, we identified proteins of four other folds as potential homologs of β-propellers: the luminal domain of inositol-requiring enzyme 1 (IRE1-LD), type II β-prisms, β-pinwheels, and WW domains. Because, with increasing evolutionary distance and decreasing sequence length, the statistical significance of sequence comparisons becomes progressively harder to distinguish from the background of convergent similarities, we complemented our analyses with a new method that evaluates possible homology based on the correlation between sequence and structure similarity. Our results indicate a homologous relationship of IRE1-LD and type II β-prisms with β-propellers, and an analogous one for β-pinwheels and WW domains. Whereas IRE1-LD most likely originated by fold-changing mutations from a fully formed PQQ motif β-propeller, type II β-prisms originated by amplification and differentiation of a single blade, possibly also of the PQQ type. We conclude that both β-propellers and type II β-prisms arose by independent amplification of a blade-sized fragment, which represents a remnant of an ancient peptide world. PMID:24143202

  5. From northern Gondwana passive margin to arc dismantling: a geochemical discrimination of Ordovician volcanisms (Sardinia, Italy)

    Science.gov (United States)

    Gaggero, L.; Oggiano, G.; Buzzi, L.; Funedda, A.

    2009-04-01

    In Sardinia, one of the southernmost remain of the European Variscan belt, a crustal section through northern Gondwanan paleodomains is largely preserved. It bears significant evidence of igneous activity, recently detailed in field relationships and radiometric dating (Oggiano et al., submitted). A Cambro - Ordovician (491.7 ± 3.5 Ma ÷ 479.9 ± 2.1 Ma, LA-ICP-MS U-Pb zircon age) bimodal volcanic suite occurs with continuity in external and inner Variscan nappes of Sardinia below the so-called Sardic unconformity. The igneous suite represents an intraplate volcanic activity developed through subsequent episodes: i) an intermediate explosive and effusive volcanism, i.e. pyroclastic fall deposits and lava flows, embedded into epicontinental clastic sediments, culminating in silicic ignimbrite eruptions, and ii) mafic effusives. Geochemical data document a transitional, within-plate signature, e.g. the average Th/Ta (4.5) and La/Nb (2.7) overlap the upper continental crust values. The volcanites are characterized by slight fractionation of LREEs, nearly flat HREE abundance. The negative Eu anomaly increases towards evolved compositions. Some prominent HREE depletion (GdCN/YbCN = 13.8), and the high Nb/Y suggest a garnet-bearing source. The high 87Sr radiogenic content (87Sr/86Sr 490 Ma = 0.71169) and the epsilon Nd 490 Ma value of -6.54 for one dacite sample, imply a time integrated LREE-enriched source with a high Rb/Sr, such as a metasedimentary source. The stratigraphy of the succession and the geochemical composition of igneous members suggest a volcanic passive margin along the northern Gondwana at the early Ordovician. The bimodal Mid-Ordovician arc volcanism (465.4 ± 1.4 Ma, U-Pb zircon age; Oggiano et al., submitted) is developed in the external nappes (e.g. in Sarrabus and Sarcidano) and in the foreland occurs as clasts at the base of the Hirnantian succession (Leone et al. 1991). The Mid Ordovician sub-alkalic volcanic suite has reliable stratigraphic and

  6. The eoorthid brachiopod Apheoorthina in the Lower Ordovician of NW Argentina and the dispersal pathways along western Gondwana

    Directory of Open Access Journals (Sweden)

    Diego F. Muñoz

    2016-08-01

    Full Text Available The eoorthid brachiopod Apheoorthina is reported for the first time from the Lower Ordovician of NW Argentina. It is represented by a species similar to A. ferrigena from the Tremadocian of the Prague Basin, increasing the faunal affinities between the Central Andean Basin and the South European microcontinents, in particular the Bohemian region (Perunica. Nine out of the fourteen brachiopod genera reported from the Tremadocian of the Central Andean Basin (~64% are shared with the Mediterranean region, four of which (~28% have been recorded in the Prague Basin, and two (Kvania and Apheoorthina are restricted to the Central Andes and Perunica. Dispersal pathways around Gondwana are analyzed in the light of major factors affecting large-scale distribution of brachiopods (environment, larval capacity for dispersal, oceanic currents. The presence in Apheoorthina aff. ferrigena of a well-preserved larval protegulum measuring 420 μm in width and 210 μm in length strongly suggests that this species had planktotrophic larvae capable of long-distance dispersal. According to recent ocean-atmosphere general circulation models for the Ordovician Period, the Central Andean margin was dominated by the cold-water Antarctica Current. Despite the complex non-zonal pattern produced by current deflections around the peri-Gondwanan microcontinents, the general westward circulation sense favoured larval dispersal from the Andean region to North Africa, Avalonia, the Armorican Terrane Assemblage, and Perunica. On the other hand, the eastwards flowing Gondwana Current connected the North Gondwana waters with the South American epicontinental seas, which could explain the reversed migration of some brachiopods.

  7. Tectonostratigraphic terranes of the frontier circum-Pacific region

    Energy Technology Data Exchange (ETDEWEB)

    Howell, D.G.; Jones, D.L.; Schermer, E.R.

    1983-03-01

    Many major exploration frontiers around the Pacific are in regions where complex geologic relations reflect plate-tectonic processes, crustal mobility, and accretion of exotic terranes. The destruction of the proto-Pacific ocean (Panthalassa) involved accretion of terranes to cratonal regions such as Gondwana and Laurasia. Terranes in southwestern New Zealand and eastern Antarctica were also probably accreted during the Paleozoic. The southern margin of Siberia, extending into China, underwent a protracted period of accretion from the late Precambrian through the early Mesozoic. Mid-Paleozoic accretion is reflected in the Innuitian foldbelt of the Arctic Ocean, the Black Clastic unit of the northern Rocky Mountains, and the Antler orogeny of the western US cordillera. The Mesozoic breakup of Pangaea and the acceleration of subduction aided in the rifting and dispersal of terranes from equatorial paleolatitudes. Fragments of these terranes now compose much of the continental margins of the Pacific basin, including New Zealand, Indochina, southern China, southeast Siberia, the North American cordillera, and South America. Some terranes are presently being further fragmented by post-accretionary dispersion processes such as strike-slip faulting in western North America and Japan. Although the character and distribution of terranes in the western US are fairly well documented, details are needed for other terranes around the Pacific basin. Interpretation of structure and stratigraphy at depth will be aided by more data on the timing of accretion and the nature of deformation associated with accretion and dispersion. Such data are needed for further define specific exploration targets in the circum-Pacific region.

  8. Eclogite-high-pressure granulite metamorphism records early collision in West Gondwana: new data from the Southern Brasilia Belt, Brazil

    DEFF Research Database (Denmark)

    Reno II, Barry Len; Brown, Michael; Kobayashi, Katsura;

    2009-01-01

    associated with ilmenite in samples from two structural levels in the passive margin-derived high-pressure granulite nappe yields Pb-201/U-238 ages of 648 +/- 12 and 647 +/- 11 Ma, and Ti-in-zircon crystallization temperatures from c. 860 degrees C down to c. 785 degrees C. but skewed toward the lower part...... +/- 28 Ma and Ti-in-zircon crystallization temperatures from c. 970 degrees C down to c. 820 degrees C, which we interpret to record formation of zircon during cooling from peak high-pressure granulite-facies conditions. These ages indicate that the first stage of craton amalgamation in West Gondwana may...

  9. First occurrence of a new Ocruranus-like helcionelloid mollusc from the lower Cambrian of East Gondwana

    DEFF Research Database (Denmark)

    Skovsted, Christian B.; Brock, Glenn A.; Topper, Timothy Paul

    2012-01-01

    A new cap-shaped mollusc, Emargimantus angulatus gen. et sp. nov. is described from the Arrowie Basin of South Australia. The new species is closely comparable to mollusc species from South China and North-East Greenland previously described under the generic name Ocruranus Liu, a genus recently...... reinterpreted as a multiplated, possibly polyplacophoran mollusc. Emargimantus is interpreted as a univalved helcionelloid mollusc and differs from Ocruranus in both morphology and function. E. angulatus represents the first discovery of Ocruranus-like helcionelloids in the lower Cambrian of eastern Gondwana...

  10. An ancestral role for the mitochondrial pyruvate carrier in glucose-stimulated insulin secretion

    Directory of Open Access Journals (Sweden)

    Kyle S. McCommis

    2016-08-01

    Conclusions: Altogether, these studies suggest that the MPC plays an important and ancestral role in insulin-secreting cells in mediating glucose sensing, regulating insulin secretion, and controlling systemic glycemia.

  11. Analysis of the stone ancestral hall of Guo’s tomb on Xiaotang mountainin Han dynasty architectural features

    Institute of Scientific and Technical Information of China (English)

    刘国庆

    2014-01-01

    The stone ancestral hall of Guo’s tomb in Xiaotang mountain is the earliest existing buildings on the ground in China. It has a very high historical, cultural and artistic value, and it was described by the ancient and modern scholars and experts in their books and articles. But the study of architectural of ancestral hall was emphasized from 1930s, and became a brilliant star in the Chinese historic buildings. In this article, the architectural characteristics of the stone ancestral hall are discussed through fieldworks, in order to clarify the real architecture appearance of the ancestral hall and refer more informations for comprehensive study of Xiaotang stone ancestral hall.

  12. Mapping ancestral genomes with massive gene loss: a matrix sandwich problem.

    OpenAIRE

    Gavranović, Haris; Chauve, Cedric; Salse, Jérôme; Tannier, Eric

    2011-01-01

    MOTIVATION: Ancestral genomes provide a better way to understand the structural evolution of genomes than the simple comparison of extant genomes. Most ancestral genome reconstruction methods rely on universal markers, that is, homologous families of DNA segments present in exactly one exemplar in every considered species. Complex histories of genes or other markers, undergoing duplications and losses, are rarely taken into account. It follows that some ancestors are inaccessible by these met...

  13. Paleozoic Orogens of Mexico and the Laurentia-Gondwana Connections: an Update

    Science.gov (United States)

    Ortega-Gutierrez, F.

    2009-05-01

    The present position of Mexico in North America and the fixist tectonic models that prevailed prior to the seventies of the past century, have considered the main Paleozoic tectonic systems of Mexico as natural extensions of the orogens that fringed the eastern and southern sides of the Laurentian craton. Well known examples of pre-Mesozoic orogens in Mexico are the Oaxacan, Acatlan, and Chiapas polymetamorphic terranes, which have been correlated respectively with the Grenville and Appalachian-Ouachitan orogens of eastern North America. Nonetheless, several studies conducted during the last decade in these Mexican orogenic belts, have questioned their Laurentian connections, regarding northwestern Gondwana instead as the most plausible place for their birth and further tectonic evolution. This work pretends to approach the problem by briefly integrating the massive amount of new geological information, commonly generated through powerful dating methods such as LA-ICPM-MS on detrital zircon of sedimentary and metasedimentary units in the Paleozoic crustal blocks, which are widely exposed in southern and southeastern Mexico. The Acatlan Complex bears the closest relationships to the Appalachian orogenic system because it shows thermotectonic evidence for opening and closure of the two main oceans involved in building the Appalachian mountains in eastern Laurentia, whereas two other Paleozoic terranes in NW and SE Mexico, until recently rather geologically unknown, may constitute fundamental links between the Americas for the last-stage suturing and consolidation of western Pangea. The buried basement of the Yucatan platform (400,000 squared km) on the other hand, remains as one of the most relevant problems of tectonostratigraphic correlations across the Americas, because basement clasts from the Chicxulub impact ejecta reveal absolute and Nd-model ages that suggest close Gondwanan affinities. Major changes in the comprehension of the Paleozoic orogens in Mexico

  14. Is the Palaeozoic of Istanbul a part of Gondwana-Land or Laurasia, or both?

    Science.gov (United States)

    Lom, Nalan; Ülgen, Semih Can; Özgül, Necdet; Celal Şengör, A. M.

    2014-05-01

    The Istanbul Zone, northwestern Turkey, located along the southwestern Black Sea coast, consists of a Neoproterozoic (almost entirely Ediacaran) middle to high-grade crystalline basement with relicts of oceanic lithosphere, volcanic arc and continental crust of unknown affinity and it is overlain by a continuous, well-developed transgressive sedimentary sequence extending from the late Ordovician to the Carboniferous. The Palaeozoic sequence was folded and thrust-faulted during the Carboniferous Hercynian orogeny, and is unconformably overlain by Lower Triassic and younger sedimentary strata. The Istanbul Zone is separated from the Sakarya Zone by the Intra- Pontide suture of early to medial Eocene and from the Strandja Massif by an inferred right-lateral strike-slip West Black Sea Fault. The Sakarya and Strandja fragments exhibit late Triassic and late Jurassic-Early Cretaceous metamorphism and deformation, respectively, which are not observed in the Istanbul Zone. The Palaeozoic sequences of Istanbul and Zonguldak have been compared and correlated with similar sequences in Europe, including the Moesian platform in Romania and Bulgaria, Moravo-Silesia (Brunovistulian) in the Czech Republic and the Rhenohercynian zone in Germany and Belgium, all deposited on the northern passive margin of the Rheic ocean. However, these correlations are based on insufficient knowledge of the correlated rock sequences. By contrast, the İstanbul sequence resembles the Carnic Alps, the Montaigne Noir, the Bohemian (Saxo-Thuringian), the Morocco, the Pyrenean sequences and thus northern Gondwana-Land of the Palaeozoic times. Istanbul Zone thus combines the characteristics of both the north and south Hercynian margins! The Istanbul Zone shows characteristics of graben-facies deposits during the Ordovician-early Silurian followed by Atlantic-type continental margin sediments of late Silurian- late Devonian age. Since the arc is missing, the ocean facing İstanbul must have been consumed

  15. Ancient plate kinematics derived from the deformation pattern of continental crust: Paleo- and Neo-Tethys opening coeval with prolonged Gondwana-Laurussia convergence

    Science.gov (United States)

    Kroner, Uwe; Roscher, Marco; Romer, Rolf L.

    2016-06-01

    The formation and destruction of supercontinents requires prolonged convergent tectonics between particular plates, followed by intra-continental extension during subsequent breakup stages. A specific feature of the Late Paleozoic supercontinent Pangea is the prolonged and diachronous formation of the collisional belts of the Rheic suture zone coeval with recurrent continental breakup and subsequent formation of the mid-ocean ridge systems of the Paleo- and Neo-Tethys oceans at the Devonian and Permian margins of the Gondwana plate, respectively. To decide whether these processes are causally related or not, it is necessary to accurately reconstruct the plate motion of Gondwana relative to Laurussia. Here we propose that the strain pattern preserved in the continental crust can be used for the reconstruction of ancient plate kinematics. We present Euler pole locations for the three fundamental stages of the Late Paleozoic assembly of Pangea and closure of the Rheic Ocean: (I) Early Devonian (ca. 400 Ma) collisional tectonics affected Gondwana at the Armorican Spur north of western Africa and at the promontory of the South China block/Australia of eastern Gondwana, resulting in the Variscan and the Qinling orogenies, respectively. The Euler pole of the rotational axis between Gondwana and Laurussia is positioned east of Gondwana close to Australia. (II) Continued subduction of the western Rheic Ocean initiates the clockwise rotation of Gondwana that is responsible for the separation of the South China block from Gondwana and the opening of Paleo-Tethys during the Late Devonian. The position of the rotational axis north of Africa reveals a shift of the Euler pole to the west. (III) The terminal closure of the Rheic Ocean resulted in the final tectonics of the Alleghanides, the Mauritanides and the Ouachita-Sonora-Marathon belt, occurred after the cessation of the Variscan orogeny in Central Europe, and is coeval with the formation of the Central European Extensional

  16. Evidence of Gondwana early rifting process recorded by Resende-Ilha Grande Dike Swarm, southern Rio de Janeiro, Brazil

    Science.gov (United States)

    Guedes, Eliane; Heilbron, Monica; de Morisson Valeriano, Claudio; de Almeida, Julio César Horta; Szatmari, Peter

    2016-04-01

    Continental flood basalts and dike swarm have been related to continental breakup process through geological time. The Resende - Ilha Grande Dike swarm (RIGDS) located in the southeast Brazil, is related the Gondwana breakup and composed of dikes/sills intruded in Precambrian gneiss. The dikes have three distinguish orientations: NNW more inland; NS-NNE in the central segment and NE orientation in the coast line, consistent with Precambrian structural lineaments. The swarm comprises high-TiO2 tholeiitic basalts divided into three suites based on REE and Sr and Nd isotope data. The Resende and Volta Redonda suites present higher initial 87Sr/86Sr ratios between 0.7077 and 0.7065, while Angra dos Reis suite presents values of 0.7066 to 0.7057. Geochemical and isotopic data support the sub-continental lithospheric mantle (SCLM) as the main source for the high-TiO2 basalts. The suites heterogeneities are explained by different compositions of SCLM in accreted Precambrian terranes and/or different degree of partial melting and fractional. 40Ar/39Ar data indicate age interval between ca. 156 to 144 Ma for the swarm, older than the average for Gondwana breakup (ca. 130-120 Ma). The age interval places the RIGDS between the Karoo magmatism (181-178 Ma) and the Paraná-Etendeka magmatism (133-134 Ma) and indicates that extensional process affected the supercontinent prior the break-up.

  17. The Mesozoic Continental Magmatism in Brazil: its Role in the Western Gondwana Evolution from Integrated Paleomagnetic and Geochemical Data

    Science.gov (United States)

    Ernesto, M.; Marques, L. S.

    2011-12-01

    Most of the Paleozoic era in the South American platform represents a period of tectonic quiescence during which large sedimentary basins evolved. Subsequently an intense magmatic activity took place preceding the disclosure of the Gondwana from Pangea, and later the disruption of the western Gondwana blocks (South America and Africa separation). In Brazil Early Jurassic (~220-180 Ma) tholeiitic basalts erupted mostly in the northern area (Amazonas and Parnaíba basins), whereas the Early Cretaceous (~140-120 Ma) is best represented by the huge magmatism of the Serra Geral Formation (Paraná basin, southeastern Brazil). An intense associated intrusive activity in the form of dykes and sills of both ages is widespread all over the country but tends to concentrate towards the continental margins. The integration of paleomagnetic and geochemical data on the Brazilian Mesozoic magmatism put some constraints on the timing, duration and the mantle sources involved in the generation of the magma products related to the different magmatic events.

  18. The first discovery of Permian conodont fauna from peri-Gondwana cool water facies in Tibet, China

    Institute of Scientific and Technical Information of China (English)

    ZHENG YouYe; XU RongKe; WANG ChengYuan; MA GuoTao

    2007-01-01

    The Angjie Formation and Xiala Formation, present in the Shiquanhe area of Gar County in the western part of Gangdise, Tibet, belong to the Gangdise stratigraphic subregion. Conodonts have been found in the Angjie Formation, and they permit an age determination of Early to Middle Permian for that formation. The age of the Xiala Formation could be late Middle Permian. Whether the Late Permian marine deposits are present in this area still needs to be determined, but it ie possible that the lower part of the Xiala Formation overlaps partly the upper part of the Angjie Formation. More importantly, the study has brought about a finding of typical peri-Gondwana cool water facies conodonts, namely,Vjalovognathus sp. nov. x. This is the first report and brief description of a conodont fauna from peri-Gondowana cool water facies in China. It indicates that the Gangdise stratigraphic subregion can be subdivided; the western part belongs to peri-Gondwana cool water facies, and the eastern part belongs to Tethys.

  19. South Pacific newsletter : 9

    OpenAIRE

    Kagoshima University Research Center for the South Pacific; カゴシマ ダイガク ミナミ タイヘイヨウ カイイキ ケンキュウ センター; 鹿児島大学南太平洋海域研究センター

    1998-01-01

    The Future of the Research Center for the South Pacific / INOUE Akio (Director, Kagoshima University Research Center for the South Pacific) Unicellular Organisms with Calcareous Shells in the Subtropical and Tropical NW-Pacific / HOHENEGGER Johann (Visiting Professor, Kagoshima University Research Center for the South Pacific) [Symposium] Foraminifera as Indicators of Marine Environments in the Present and Past Why Does Foraminifera Act as Useful Proxies for Modern and Ancient ...

  20. The Río de la Plata craton and the assembly of SW Gondwana

    Science.gov (United States)

    Rapela, C. W.; Pankhurst, R. J.; Casquet, C.; Fanning, C. M.; Baldo, E. G.; González-Casado, J. M.; Galindo, C.; Dahlquist, J.

    2007-07-01

    origin within Gondwana-forming blocks, for which the closest identifiable sources are 'Brazilian' and 'African' (Namaqua-Natal). Consequently, the preferred model for the Pampean orogeny is that the Río de la Plata craton reached its present position by large-scale dextral strike-slip movement against fore-arc sedimentary sequences that had developed on the southern and western margins of the Kalahari craton during the Early Cambrian. In the final stage the displaced sedimentary sequences outboard of the RPC collided with the Mesoproterozoic Western Sierras Pampeanas terrane, which was at the time attached to the large Amazonia craton and other smaller continental blocks, such as Arequipa-Antofalla and Río Apa. Protracted relative displacement of the RPC after the Pampean Orogeny led to its final position.

  1. Influence of Late Paleozoic Gondwana glaciations on the depositional evolution of the northern Pangean shelf, North Greenland, Svalbard and the Barents Sea

    DEFF Research Database (Denmark)

    Stemmerik, Lars

    2008-01-01

    Outcrop and subsurface data from the central northern margin of the Pangean shelf in North Greenland, Svalbard, and the Norwegian Barents Sea record the depositional response of a Northern Hemisphere subtropical shelf to Late Carboniferous-Early Permian (Bashkirian-Sakmarian) Gondwana glaciations...

  2. Social capital and health: evidence that ancestral trust promotes health among children of immigrants.

    Science.gov (United States)

    Ljunge, Martin

    2014-12-01

    This paper presents evidence that generalized trust promotes health. Children of immigrants in a broad set of European countries with ancestry from across the world are studied. Individuals are examined within country of residence using variation in trust across countries of ancestry. The approach addresses reverse causality and concerns that the trust measure picks up institutional factors in the individual's contextual setting. There is a significant positive estimate of ancestral trust in explaining self-assessed health. The finding is robust to accounting for individual, parental, and extensive ancestral country characteristics. Individuals with higher ancestral trust are also less likely to be hampered by health problems in their daily life, providing evidence of trust influencing real life outcomes. Individuals with high trust feel and act healthier, enabling a more productive life. PMID:25464341

  3. From Gondwana to Europe: the journey of Elba Island (Italy) as recorded by U-Pb detrital zircon ages of Paleozoic metasedimentary rocks

    Science.gov (United States)

    Jacobs, Joachim; Sirevaag, Hallgeir; Ksienzyk, Anna K.; Rocchi, Sergio; Paoli, Gabriele

    2016-04-01

    The configuration of the northern Gondwana margin throughout the Paleozoic is difficult to reconstruct owing to the complex geodynamic setting of the Mediterranean region in Mesozoic to Cenozoic times. Detrital zircons in early Paleozoic to early Mesozoic metasedimentary rocks on Elba and mainland Tuscany record the Gondwana provenance of Adria and its rifting from the northern Gondwana margin. A large new LA-ICP-MS and SIMS U-Pb zircon data set allows us to trace this history. Three main stratigraphic units have been investigated on Elba Island. The oldest Porto Azzurro Unit was deposited in the early Cambrian and has zircon age distributions indicating a typical northern African provenance, most likely sourced from the Saharan Metacraton. The Ortano Unit has a simple, mostly unimodal Ordovician age distribution that is entirely dominated by metavolcanic rocks and their erosional products; a sample of the metavolcanic Ortano Porphyroids provided a SIMS U-Pb zircon age of 460 ± 3 Ma. This phase of intense volcanism is related to the subduction of the Rheic Ocean beneath Gondwana, terminating with initial rifting and subsequent opening of the Paleotethys. This also marks the onset of the separation of a range of European terranes, including Adria and future Elba Island, from Gondwana. The Permo-Triassic Monticiano-Roccastrada Unit is the first to show a European provenance with the appearance of large amounts of Variscan and late to post-Variscan detritus. The presence of Variscan detrital zircons in the Permo-Triassic sediments is unexpected, since a Variscan age signature is so far not well recorded in the Adria Plate. This dataset is the most comprehensive detrital zircon data set so far available for the Adria Plate and documents Adria's close affinity to Africa in the Lower Paleozoic, as well as its initial rifting within an active continental margin setting during the Ordovician and its final separation and independent evolution since late Palaeozoic times.

  4. Provenance of Permian-Triassic Gondwana Sequence Units Accreted to the Banda Arc: Constraints from U/Pb and Hf Analysis of Zircons and Igneous Geochemistry

    Science.gov (United States)

    Flores, J. A.; Spencer, C. J.; Harris, R. A.; Hoiland, C.

    2011-12-01

    Analysis of zircons from Australian affinity Permo-Triassic units of the Timor region yield age distributions with large peaks at 230-400 Ma and 1750-1900 Ma (n=435). Similar zircon age peaks are also found in rocks from NE Australia and the eastern Cimmerian block. It is likely that these terranes, which are now widely separated, were once part of the northern edge of Gondwana near what is now the NW margin of Australia. The Cimmerian Block was removed from Gondwana during Early Permian rifting and initiation of the Neo-Tethys Ocean. Hf analysis of zircon from the Aileu Complex in Timor and Kisar shows bimodal (juvenial and evolved) magmatism in the Gondwana Sequence of NW Australia at ~300 Ma. The magmatic event produced basalt with rift valley and ocean floor geochemical affinities, and rhyolite. Similar rock types and isotopic signatures are also found in Permo-Triassic igneous units throughout the Cimmerian continental block. The part of the Cimmerian Block with zircon distributions most like the Gondwana Sequence of NW Australia is the terranes of northern Tibet and Malaysia. The large 1750-1900 Ma zircon peak is much more wide spread, and appears in terranes from Baoshan (SW China) to Borneo. The Permo-Triassic rocks of the Timor region fill syn-rift intracratonic basins that successfully rifted in the Jurassic to form the NW margin of Australia. This passive continental margin first entered the Sunda Trench in the Timor region at around 8 Ma causing the Permo-Triassic rocks to accrete to the edge of the Asian Plate and emerge as a series of mountainous islands in the young collision zone. Eventually, the Australian continental margin will collide with the southern edge of the Asian plate and these Gondwana terranes will rejoin. However, it may be difficult to reconstruct the various ventures of they made over the past 300 Ma.

  5. Reconstructed Ancestral Enzymes Impose a Fitness Cost upon Modern Bacteria Despite Exhibiting Favourable Biochemical Properties.

    Science.gov (United States)

    Hobbs, Joanne K; Prentice, Erica J; Groussin, Mathieu; Arcus, Vickery L

    2015-10-01

    Ancestral sequence reconstruction has been widely used to study historical enzyme evolution, both from biochemical and cellular perspectives. Two properties of reconstructed ancestral proteins/enzymes are commonly reported--high thermostability and high catalytic activity--compared with their contemporaries. Increased protein stability is associated with lower aggregation rates, higher soluble protein abundance and a greater capacity to evolve, and therefore, these proteins could be considered "superior" to their contemporary counterparts. In this study, we investigate the relationship between the favourable in vitro biochemical properties of reconstructed ancestral enzymes and the organismal fitness they confer in vivo. We have previously reconstructed several ancestors of the enzyme LeuB, which is essential for leucine biosynthesis. Our initial fitness experiments revealed that overexpression of ANC4, a reconstructed LeuB that exhibits high stability and activity, was only able to partially rescue the growth of a ΔleuB strain, and that a strain complemented with this enzyme was outcompeted by strains carrying one of its descendants. When we expanded our study to include five reconstructed LeuBs and one contemporary, we found that neither in vitro protein stability nor the catalytic rate was correlated with fitness. Instead, fitness showed a strong, negative correlation with estimated evolutionary age (based on phylogenetic relationships). Our findings suggest that, for reconstructed ancestral enzymes, superior in vitro properties do not translate into organismal fitness in vivo. The molecular basis of the relationship between fitness and the inferred age of ancestral LeuB enzymes is unknown, but may be related to the reconstruction process. We also hypothesise that the ancestral enzymes may be incompatible with the other, contemporary enzymes of the metabolic network. PMID:26349578

  6. Carbon isotope chemostratigraphy of the Llandovery in northern peri-Gondwana: new data from the Barrandian area, Czech Republic

    Directory of Open Access Journals (Sweden)

    Jiří Frýda

    2014-12-01

    Full Text Available The first complete δ13Corg record of the uppermost Hirnantian to lower Telychian strata of the Barrandian area (northern peri-Gondwana is presented based on 168 new samples. The new data from the study area reveal that the evolution of the Llandoverian organic carbon isotope reservoir was similar to that on other palaeoplates, but it differs from the development of the coeval carbonate carbon isotope reservoir in the absence of two δ13C excursions (i.e. the early Aeronian positive excursion in the upper part of the Demirastrites triangulatus graptolite Biozone and a negative excursion occurring close to the boundary between the Cystograptus vesiculosus and Coronograptus cyphus graptolite biozones.

  7. New Rb-Sr mineral ages temporally link plume events with accretion at the margin of Gondwana

    Science.gov (United States)

    Flowerdew, M.J.; Daly, J.S.; Riley, T.R.

    2007-01-01

    Five of six Rb-Sr muscovite mineral isochron ages from the Scotia Metamorphic Complex of the South Orkney Islands, West Antarctica, average 190 ± 4 Ma. The muscovite ages are interpreted to date foliation-formation and thus also accretion and subduction at the Gondwana margin. Coincident picrite and ferropicrite magmatism, indicative of melts from deep-seated depleted mantle, permits a causative link between accretion and the arrival of the Karoo – Ferrar – Chon Aike mantle plume in the Early Jurassic. Three biotite Rb-Sr mineral isochron ages are consistently younger and average 176 ± 5 Ma. The biotite ages may record post-metamorphic cooling or more likely retrogressive metamorphic effects during uplift.

  8. Pacific Flyway management plan for Pacific brant

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Pacific Flyway brant (Branta bernicla) population (PFBP) is made up of brant breeding in Alaska, the western Canadian arctic, and the eastern Russian arctic,...

  9. Major zircon megacryst suites of the Indo-Pacific lithospheric margin (ZIP) and their petrogenetic and regional implications

    Science.gov (United States)

    Sutherland, Lin; Graham, Ian; Yaxley, Gregory; Armstrong, Richard; Giuliani, Gaston; Hoskin, Paul; Nechaev, Victor; Woodhead, Jon

    2016-04-01

    Zircon megacrysts (± gem corundum) appear in basalt fields of Indo-Pacific origin over a 12,000 km zone (ZIP) along West Pacific continental margins. Age-dating, trace element, oxygen and hafnium isotope studies on representative zircons (East Australia-Asia) indicate diverse magmatic sources. The U-Pb (249 to 1 Ma) and zircon fission track (ZFT) ages (65 to 1 Ma) suggest thermal annealing during later basalt transport, with Residence (0.20-1.02 Ga) model ages suggest several mantle events, continental break-ups (Rodinia and Gondwana) and convergent margin collisions left imprints in the zircon source melts. East Australian ZIP sites reflect prolonged intraplate magmatism (~85 Ma), often during times of fast-migrating lithosphere. In contrast, East Asian-Russian ZIP sites reflect later basaltic magmatism (<40 Ma), often linked to episodes of back-arc rifting and spreading, slow-migrating lithosphere and slab subduction.

  10. South Pacific newsletter : 11

    OpenAIRE

    Kagoshima University Research Center for the Pacific Islands; カゴシマ ダイガク タトウケン ケンキュウ センター; 鹿児島大学多島圏研究センター

    2000-01-01

    The 1999 Yap Research : 13 October to 9 November 2000 / AOYAMA Toru (Kagoshima University Research Center for the Pacific Islands) The "Local" As a Empirical Problem in Pacific Islands Anthropology / BESNIER Niko (Visiting Professor, Kagoshima University Research Venter for the Pacific Islands) [Colloquium] "Social Homeostasis of Small Islands in an Island-Zone" Autonomy and Independence of Each Islands State of the World / NAGASHIMA Shunsuke (Faculty of Human Life & Environment, ...

  11. Assessing the prediction fidelity of ancestral reconstruction by a library approach.

    Science.gov (United States)

    Bar-Rogovsky, Hagit; Stern, Adi; Penn, Osnat; Kobl, Iris; Pupko, Tal; Tawfik, Dan S

    2015-11-01

    Ancestral reconstruction is a powerful tool for studying protein evolution as well as for protein design and engineering. However, in many positions alternative predictions with relatively high marginal probabilities exist, and thus the prediction comprises an ensemble of near-ancestor sequences that relate to the historical ancestor. The ancestral phenotype should therefore be explored for the entire ensemble, rather than for the sequence comprising the most probable amino acid at all positions [the most probable ancestor (mpa)]. To this end, we constructed libraries that sample ensembles of near-ancestor sequences. Specifically, we identified positions where alternatively predicted amino acids are likely to affect the ancestor's structure and/or function. Using the serum paraoxonases (PONs) enzyme family as a test case, we constructed libraries that combinatorially sample these alternatives. We next characterized these libraries, reflecting the vertebrate and mammalian PON ancestors. We found that the mpa of vertebrate PONs represented only one out of many different enzymatic phenotypes displayed by its ensemble. The mammalian ancestral library, however, exhibited a homogeneous phenotype that was well represented by the mpa. Our library design strategy that samples near-ancestor ensembles at potentially critical positions therefore provides a systematic way of examining the robustness of inferred ancestral phenotypes.

  12. PACIFIC NORTHWEST CYBER SUMMIT

    Energy Technology Data Exchange (ETDEWEB)

    Lesperance, Ann M.; Matlock, Gordon W.; Becker-Dippmann, Angela S.; Smith, Karen S.

    2013-08-07

    On March 26, 2013, the Snohomish County Public Utility District (PUD) and the U.S. Department of Energy’s (DOE’s) Pacific Northwest National Laboratory (PNNL) jointly hosted the Pacific Northwest Cyber Summit with the DOE’s Office of Electricity Delivery and Energy Reliability, the White House, Washington State congressional delegation, Washington State National Guard, and regional energy companies.

  13. Evidence of lacustrine sedimentation in the Upper Permian Bijori Formation, Satpura Gondwana basin: Palaeogeographic and tectonic implications

    Indian Academy of Sciences (India)

    Tapan Chakraborty; Soumen Sarkar

    2005-06-01

    The Upper Permian Bijori Formation of the Satpura Gondwana basin comprising fine- to coarsegrained sandstone, carbonaceous shale/mudstone and thin coal bands was previously interpreted as the deposits of meandering rivers. The present study documents abundance of wave ripples, hummocky and swaley cross-stratification and combined flow bedforms in the Bijori Formation, suggesting that a significant part of the formation was deposited in a wave-agitated environment. Evidence of near-emergent depositional conditions provided by repeated occurrence of rootlet beds and hydromorphic paleosols, local flooding surfaces denoting rapid fluctuation of water level, occurrences of temnospondyl vertebrate fossils, and absence of tidal signatures and marine fossils suggest a lacustrine rather than marine depositional regime. Five facies associations recognised within the Bijori Formation are inferred to represent fluvial channels and associated floodplains (FA1), lake shorelines (FA2), subaqueous distributary channels and associated levees (FA3), wave- and storm-affected delta front (FA4), and open lacustrine/lower shoreface (FA5) deposits. The planoconcave fluvial channel-fill sandbodies with unidirectional cross-beds are clearly distinguishable from the delta front bars that show a convexo-plan or bi-convex sandbody geometry and dominance of wave and combined flow bedforms. Some of the distributary channels record interaction of fluvial and wave-dominated basinal processes. Major distributary sandbodies show a north to northwest flow direction while wave-affected delta front sandbodies show very complex flow patterns reflecting interaction between fluvial discharge and wave processes. Wave ripple crest trends show that the lake shoreline had an overall east–northeast to west–southwest orientation. The lack of documented contemporaneous lacustrine or marine sediments in the Satpura Gondwana basin posed a major problem of basin-scale palaeogeographic reconstruction. The

  14. Evidence of pre-Gondwana tectono-thermal event from the Bhilwara Supracrustal units of Rajasthan, north-west India

    Science.gov (United States)

    Saha, Lopamudra; Sarkar, Saheli; Rakshit, Nibedita; Nasipuri, Pritam

    2014-05-01

    In the Indian subcontinent, two pre- Gondwana (pre- Pan African) orogenies are mostly recorded and well-studied from the Eastern Ghat Mobile Belt: (i) >1.1 Ga and (ii) ~950 Ma. During the ~950Ma orogeny, the pre-existing granulites have been re-melted under granulite facies conditions at ~8 kbar, 800-850ºC in the sillimanite stability field with formation of garnet-orthopyroxene in the restites. In this study we report garnet-sillimanite bearing and garnet-staurolite-kyanite bearing supracrustal rocks from the Bhilwara Supergroup in Rajasthan, N-W India. Peak assemblage in the garnet-sillimanite bearing metapelite is: garnet-sillimanite-biotite-plagioclase-quartz. Garnet porphyroblasts contain sillimanite-biotite bearing inclusion trails. Matrix foliations consist of biotite, sillimanite, quartz. Peak pressure-temperature calculated for garnet formation are ~7-8 kbar, 800ºC. Garnet is replaced along the margins by biotite during retrogression. Within garnet-staurolite-kyanite schist, peak assemblage is formed of garnet-staurolite-biotite-kyanite quartz, where garnet and staurolite occur as porphyroclasts and the matrix foliations are formed of kyanite-biotite-quartz. Mineral assemblages and compositions in the rock indicate peak pressure-temperature >8 kbar, 600ºC. The ages of the metamorphic events at sillimanite and kyanite facies are not well-constrained. However since the Bhilwara supracrustal units occur close to the Grenvillian orogenic belt at Sandmata Complex, the timing of the peak metamorphism can be constrained at ~1.0 Ga. Garnet-sillimanite-bearing assemblages noted in the Bhilwara Supracrustal Belt, has also been noted from the Grenvillian belts in the Eastern Ghat Mobile Belt. So the question that needs to be addressed is whether the Grenvillian orogenic belt recorded form the Sandmata Complex in Rajasthan and that of the Eastern Ghat Belt had been a continuous orogenic belt? Such possibilities can be addressed by establishing detailed structural

  15. Shallow lacustrine system of the Permian Pedra de Fogo Formation, Western Gondwana, Parnaíba Basin, Brazil

    Science.gov (United States)

    Araújo, Raphael Neto; Nogueira, Afonso César Rodrigues; Bandeira, José; Angélica, Rômulo Simões

    2016-04-01

    The Permian Period of the Parnaíba Basin, northern Brazil, represented here by deposits from the Pedra de Fogo Formation, records important events that occurred in Western Gondwana near its boundary with the Mesozoic Era. The analysis of outcrop based facies from the Permian Pedra de Fogo Formation, which is 100 m thick, carried out along the eastern and western borders of the Parnaiba Basin, allowed the identification of eleven sedimentary facies, which were grouped into three distinct facies associations (FA), representative of a shallow lacustrine system associated with mudflats and ephemeral rivers. Bioturbation, desiccation cracks, silcretes and various siliceous concretions characterize the Pedra de Fogo deposits. The FA1 mudflat deposits occur predominantly at the base of the Pedra de Fogo Formation and consist of laminated claystone/mudstone, mudcrack-bearing sandstones/mudstones and sandstones exhibiting cross-lamination, massive and megaripple bedding. Popcorn-like silicified nodules and casts indicate evaporite deposits. Other common features are silica concretions, silicified tepees and silcretes. FA2 represents nearshore deposits and consists of fine-grained sandstones with evenly parallel lamination, climbing ripple cross-lamination, massive and megaripple bedding and mudstone/siltstone showing evenly parallel lamination. FA3 refers to wadi/inundite deposits, generally organized as fining-upward cycles of metric size, composed of conglomerates and medium-grained pebbly sandstones showing massive bedding and cross-stratification, as well as claystone/siltstone showing evenly parallel to undulate lamination. Scour-and-fill features are isolated in predominantly tabular deposits composed of mudstones interbedded with fine to medium-grained sandstones showing planar to slightly undulate lamination. Silicified plant remains previously classified as belonging to the Psaronius genus found in the uppermost levels of the Pedra de Fogo Formation, near the

  16. Late Paleozoic accretionary complexes on the Gondwana margin of southern Chile: Evidence from the Chonos Archipelago

    Science.gov (United States)

    Davidson, John; Mpodozis, Constantino; Godoy, Estanislao; Hervé, Francisco; Pankhurst, Robert; Brook, Maureen

    The late Paleozoic "basement" rocks that crop out along the Pacific side of the Chonos Archipelago (44°-46°S) can be divided into two north-south trending belts: (1) an eastern belt formed of submarine fan-turbidites and subordinate pelagic cherts, each containing well-preserved primary sedimentary structures, and (2) a western belt, mainly formed by strongly foliated mica schists and greenschists. Trace element contents in the cherts and greenschists indicate rocks of oceanic affinity. The structures present within the eastern rock suite are principally subiso-clinal folds (with tectonic imbrication) and locally developed zones of broken formation. The transition from these rocks into the foliated schists appears to be related to a progressive increase in metamorphism and strain associated with the development of westward verging recumbent folds and a flat-lying crenulation cleavage. It is inferred that these structures developed during the construction of a Late Carboniferous-Early Permian accretionary prism (about 260 Ma Rb-Sr ages), although sedimentation may have taken place throughout the upper Paleozoic. Rb-Sr whole-rock isochrons giving Late Jurassic to Early Cretaceous ages for some localities may indicate much later development of S2 structures. Alternatively, they may represent isotopic resetting by hydrothermal effects during the emplacement of transgressive Early Cretaceous granites, one of which gives a new Rb-Sr isochron age of 125±2Ma. This overall scenario seems to be consistent with that reported in the slightly older coastal metamorphic basement north of 34°S and equivalent or younger complexes farther south in the Madre de Dios Archipelago.

  17. Crustal structure of Gondwana-and Yangtze-typed blocks: An example by wide-angle seismic profile from Menglian to Malong in western Yunnan

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zhongjie; BAI Zhiming,; WANG Chunyong; TENG Jiwen; Lü Qingtian; LI Jiliang; SUN Shanxue; WANG Xinzheng

    2005-01-01

    The wide-angle seismic profile between Menglian and Malong crosses the Baoshan block (Gondwana-typed), and Simao and southwestern Yangtze blocks (Yangtze-typed). By interpreting the wide-angle seismic data, we obtained the seismic crust/upper mantle structure of P-wave velocities together with the seismic reflections of these three blocks, Changning- Menglian and Mojiang suture zones among the mentioned three blocks. Our interpreting results demonstrate that the P-wave crustal velocity of Simao block is slower than that of Baoshan and southwestern Yangtze block and the crustal thickness gradually thickens from the Baoshan block, Simao to southwestern Yangtze block. Crustal reflection patterns of these three blocks have distinct differences too. For the Gondwana-typed blocks, seismic reflections in the upper crust are well developed while in middle-lower crust they are very weak. The crustal reflections in the Yangtze block are very well developed. The crustal reflection patterns in Simao and southwestern Yangtze blocks are distinguishable. The average thickness of the crust in the studied area is about 40 km. And we make some discussions on the crustal thickening model of the three blocks in western Yunnan and tectonic setting of seismic developing and interaction of Gondwana and Yangtze blocks.

  18. The Choiyoi volcanic province at 34°S-36°S (San Rafael, Mendoza, Argentina): Implications for the Late Palaeozoic evolution of the southwestern margin of Gondwana

    Science.gov (United States)

    Kleiman, Laura E.; Japas, María S.

    2009-08-01

    The Choiyoi rhyolitic province of Chile and Argentina (23°S-42°S) was emplaced at the SW margin of Gondwana during the Permian. The San Rafael Massif (Mendoza, Argentina, 34°-36°S), is a key area to analyse the relative timing of Choyoi magmatism and related deformation as it bears one of the most complete and well exposed succession. Stratigraphic, structural and magmatic studies indicate that major changes of geodynamic conditions occurred during the Permian since arc-related sequences syntectonic with transpression (lower Choiyoi) were followed by transitional to intraplate, postorogenic suites coeval with transtension (upper Choiyoi). During the Early Permian, a major event of N-NNW dextral transpressional motions deformed the Carboniferous foreland basin in the San Rafael Massif. This event is attributed to the first episode of the San Rafael orogeny and can be related to oblique subduction (Az. 30°) of the Palaeo-Pacific plate. Ca. 280 Ma the inception of voluminous calc-alkaline volcanism (lower Choiyoi) syntectonic with WNW sinistral transpression of the second episode of the San Rafael orogeny, is associated with an eastward migration of the magmatic arc at this latitude. To the southeast of San Rafael, magmatism and transpression continued to migrate inland suggesting that a progressively younger, WNW, sinistral, thick skinned deformation belt broadens into the foreland and can be traced from San Rafael to Sierra de la Ventana, linking the San Rafael orogeny with the Gondwanide orogeny of the Cape Fold Belt in South Africa. This distribution of magmatism and deformation is interpreted as being the consequence of a progressive shallowing of the Palaeo-Pacific plate starting to the north of San Rafael, and culminating with a flat-slab region south of 36°S. Ca. 265 Ma the onset of predominantly felsic volcanism (upper Choiyoi) in San Rafael occurred in a Post-San Rafael extensional setting. Kinematic indicators and strain fabric analyses of San Rafael

  19. The late Paleozoic palynological diversity in southernmost Paraná (Uruguay), Claromecó and Paganzo basins (Argentina), Western Gondwana

    Science.gov (United States)

    Beri, Ángeles; Gutiérrez, Pedro R.; Balarino, M. Lucía

    2015-12-01

    This study explores the changes in palynoflora diversity of the late Paleozoic in boreholes DI.NA.MI.GE. 254 (26 samples) and DI.NA.MI.GE. 221 (14 samples) of the Paraná Basin in Uruguay and in 18 surface samples of the La Deheza Formation (Paganzo Basin) and 10 samples of borehole UTAL.CMM1.La Estrella.x-1 (Claromecó Basin) in Argentina. Possible relationships among biostratigraphic zones, diversity levels, facies and climatic evolution patterns in Western Gondwana are studied. Diversity curves of boreholes 221 and 254 and the La Deheza Formation outcrop exhibit similar diversity evolution patterns, i.e., an increase in lower strata diversity and a decrease in upper strata diversity. The disappearance events are determined to be more prominent in biozones of the Cisuralian to the Guadalupian age and less prominent in biozones of the early Cisuralian age. The number of genera raises from the glaciomarine facies, through the deltaic and the marine facies, up to the shallow marine or lagoon facies, in which the disappearance rates become more prominent. . The diversity of the lower part of the La Estrella borehole is lesser than that of the other sequences These diversity, disappearance and appearance behaviors may reflect post-glacial climatic amelioration patterns and the beginning of an arid phase.

  20. The Guarguaraz Complex and the Neoproterozoic-Cambrian evolution of southwestern Gondwana: Geochemical signatures and geochronological constraints

    Science.gov (United States)

    López de Azarevich, Vanina L.; Escayola, Mónica; Azarevich, Miguel B.; Pimentel, Márcio M.; Tassinari, Colombo

    2009-12-01

    The Guarguaraz Complex, in western Argentina, comprises a metasedimentary assemblage, associated with mafic sills and ultramafic bodies intruded by basaltic dikes, which are interpreted as Ordovician dismembered ophiolites. Two kinds of dikes are recognized, a group associated with the metasediments and the other ophiolite-related. Both have N-MORB signatures, with ɛNd between +3.5 and +8.2, indicating a depleted source, and Grenville model ages between 0.99 and 1.62 Ga. A whole-rock Sm-Nd isochron yielded an age of 655 ± 76 Ma for these mafic rocks, which is compatible with cianobacteria and acritarchae recognized in the clastic metasedimentary platform sequences, that indicate a Neoproterozoic (Vendian)-Cambrian age of deposition. The Guarguaraz metasedimentary-ophiolitic complex represents, therefore, a remnant of an oceanic basin developed to the west of the Grenville-aged Cuyania terrane during the Neoproterozoic. The southernmost extension of these metasedimentary sequences in Cordón del Portillo might represent part of this platform and not fragments of the Chilenia terrane. An extensional event related to the fragmentation of Rodinia is represented by the mafic and ultramafic rocks. The Devonian docking of Chilenia emplaced remnants of ocean floor and slices of the Cuyania terrane (Las Yaretas Gneisses) in tectonic contact with the Neoproterozoic metasediments, marking the Devonian western border of Gondwana.

  1. Defining the ancestral eutherian karyotype: a cladistic interpretation of chromosome painting and genome sequence assembly data.

    Science.gov (United States)

    Robinson, Terence J; Ruiz-Herrera, Aurora

    2008-01-01

    A cladistic analysis of genome assemblies (syntenic associations) for eutherian mammals against two distant outgroup species--opossum and chicken--permitted a refinement of the 46-chromosome karyotype formerly inferred in the ancestral eutherian. We show that two intact chromosome pairs (corresponding to human chromosomes 13 and 18) and three conserved chromosome segments (10q, 19p and 8q in the human karyotype) are probably symplesiomorphic for Eutheria because they are also present as unaltered orthologues in one or both outgroups. Seven additional syntenies (4q/8p/4pq, 3p/21, 14/15, 10p/12pq/22qt, 19q/16q, 16p/7a and 12qt/22q), each involving human chromosomal segments that in various combinations correspond to complete chromosomes in the ancestral eutherian karyotype, are also present in one or both outgroup taxa and thus are probable symplesiomorphies for Eutheria. Interestingly, several of the symplesiomorphic characters identified in chicken and/or opossum are present in more distant outgroups such as pufferfish and zebrafish (for example 3p/21, 14/15, 19q/16q and 16p/7a), suggesting their retention since vertebrate common ancestry approximately 450 million years ago. However, eight intact pairs (corresponding to human chromosomes 1, 5, 6, 9, 11, 17, 20 and the X) and three chromosome segments (7b, 2p-q13 and 2q13-qter) are derived characters potentially consistent with eutherian monophyly. Our analyses clarify the distinction between shared-ancestral and shared-derived homology in the eutherian ancestral karyotype.

  2. Late Paleozoic deformation of interior North America: The greater Ancestral Rocky Mountains

    Energy Technology Data Exchange (ETDEWEB)

    Ye, Hongzhuan [Massachusetts Inst. of Technology, Cambridge, MA (United States)]|[Univ. of Texas at Dallas, Richardson, TX (United States); Royden, L.; Burchfiel, C. [Massachusetts Inst. of Technology, Cambridge, MA (United States); Schuepbach, M. [MAXUS Energy Co., Dallas, TX (United States)

    1996-09-01

    Late Paleozoic deformation within interior North America has produced a series of north-northwest- to northwest-trending elongate basins that cover much of Oklahoma, Texas, New Mexico, Colorado, and Utah. Each basin thickens asymmetrically toward an adjacent region of coeval basement uplift from which it is separated by synsedimentary faults with great vertical relief. The remarkable coincidence in timing, geometry, and apparent structural style throughout the region of late Paleozoic deformation strongly suggests that these paired regions of basin subsidence and basement uplift form a unified system of regional deformation, the greater Ancestral Rocky Mountains. Over this region, basin subsidence and basement uplift were approximately synchronous, beginning in the Chesterian-Morrowan, continuing through the Pennsylvanian, and ending in the Wolfcampian (although minor post-Wolfcampian deformation occurs locally). The basement uplifts show evidence for folding and faulting in the Pennsylvanian and Early Permian. Reverse faults and thrust faults have been drilled over many of the uplifts, but only in the Anadarko region has thrusting of the basement uplifts over the adjacent basin been clearly documented. Extensive basement-involved thrusting also occurs along the margins of the Delaware and Midland basins, and suggests that the entire greater Ancestral Rocky Mountains region probably formed as the result of northeast-southwest-directed-intraplate shortening. Deformation within the greater Ancestral Rocky Mountains was coeval with late Paleozoic subduction along much of the North American plate margin, and has traditionally been related to emplacement of thrust sheets within the Ouachita-Marathon orogenic belt. The nature, timing, and orientation of events along the Ouachita-Marathon belt make it difficult to drive the deformation of the greater Ancestral Rocky Mountains by emplacement of the Ouachita-Marathon belt along the southern margin of North America.

  3. Linguistic Diversity in the Pacific.

    Science.gov (United States)

    Crowley, Terry

    1999-01-01

    Reviews Peter Muhlhausler's book "Linguistic Ecology: Language Change and Linguistic Imperialism in the Pacific Region." Discusses the linguistic diversity of the Pacific, the linguistic impact of colonialism in the Pacific, and the role of linguists in the evolving linguistic situation in the Pacific. (Author/VWL)

  4. Paleomagnetic study of Siluro-Devonian volcanic rocks from the central Lachlan Orogen: Implications for the apparent pole wander path of Gondwana

    Science.gov (United States)

    VéRard, Christian; Tait, Jennifer; Glen, Richard

    2005-06-01

    The apparent pole wander (APW) path for Gondwana is still not clearly established, in particular, for Silurian-Devonian times. A controversial debate places authors who argue for an "X path," running directly through Africa on a reconstruction of Gondwana against those who advocate a large loop passing by southern South America, the "Y path." Most of the paleomagnetic data used to draw this loop come from the Lachlan Orogen (Australia). A paleomagnetic study was carried out in the well-dated Ambone and Ural volcanics in the central subprovince of Lachlan Orogen, New South Wales. Anisotropy of magnetic susceptibility measurements confirms detailed mapping of the region and shows that these massive dacitic sills and/or lava flows are flat lying. Among the different localities studied, only one yields interpretable paleomagnetic results. Two components of magnetization can be identified: a midtemperature direction yielding a corresponding pole in Australian coordinates λ = 67.9°S/ϕ = 084.4°E (B = 5; n = 21; dp = 17.5°/dm = 23.1°) and a high-temperature direction with a corresponding VGP λ = 24.4°S/ϕ = 060.6°E (B = 5; n = 25; dp = 1.4°/dm = 2.5°). The first is interpreted as corresponding to an Early Carboniferous pole position and can be regarded as an overprint probably related to the Early Carboniferous Kanimblan orogenic event. The second does not correspond to any expected Silurian-Devonian or younger pole position. This magnetization is thought to be primary in origin; however, secular variation has apparently not been averaged out in the single lava flow sampled. Therefore the earliest Devonian paleopole position probably lies in a 30° cone around the obtained VGP, and this position can only match the X-type APW path for Gondwana. It is in particular very different from coeval poles obtained in the eastern subprovince of the Lachlan Orogen, and it is mostly used as key poles supporting the Silurian-Devonian loop for the APW path of Gondwana

  5. Detrital zircon provenance of Silurian-Devonian and Triassic sedimentary rocks of the western Yangtze Block: Constraint for the location of South China in Gondwana supercontinent

    Science.gov (United States)

    Chen, Qiong; Sun, Min; Zhao, Guochun

    2016-04-01

    During Paleozoic even to early Mesozoic, South China, along with a series of Asia continental blocks, dispersed from the northern margin of Gondwana, drifting across the Tethys Ocean and accreting to the final assembly of Asia in Triassic, which also accepted sediments sourced from the adjoining segments of east Gondwana and itself successively. However, the exact location of South China within the east Gondwana and other Asia blocks is arguing and confusing. Detrital zircon U-Pb geochronology and Hf isotope data from Paleozoic sedimentary rocks and massive Triassic flysch sequences kept in the western margin of South China (Danba-Longmenshan regions) provide a record of the source from which they were derived, and thus being applied to constraining the distribution of basement block in paleogeographic reconstructions and the tectonic setting of the basin. Two Longmenshan Devonian sediments exhibit dominant Grenvillian ages (0.9-1.1 Ga), with mid-Neoproterozoic (730-850 Ma), Pan-African (500-680 Ma) and Neoarchean (2.4-2.5 Ga) age populations, indicative of a typical Gondwana-derived affinity, which is also recorded by the Danba Silurian sample and other Paleozoic sediments (Devonian-Cambrian) in the resting South China block, including the east Yangtze block and the Cathaysia. However, the similar age patterns are not observed in the Devonian sample of Danba region, which exhibits a different age pattern with only two significant age groups of Pan-African (440-600 Ma) and Neoproterozoic (660-994 Ma) with an apparent lack of older zircon grains (>1.0 Ga). The Triassic sandstone from Songpan-Ganze covering sequences shows a distinguished zircon age distribution with prominant mid-Neoproterozoic (649-843 Ma), mid-Paleoproterozoic (1724-1951 Ma) and subordinated Permian-Triassic (236-298 Ma), Paleozoic (375-530 Ma) ages, mainly derived by melting of old crust with few input of juvenile material. Considering provenance changes along with the temporal and variation in

  6. Ancestral Protein Reconstruction Yields Insights into Adaptive Evolution of Binding Specificity in Solute-Binding Proteins.

    Science.gov (United States)

    Clifton, Ben E; Jackson, Colin J

    2016-02-18

    The promiscuous functions of proteins are an important reservoir of functional novelty in protein evolution, but the molecular basis for binding promiscuity remains elusive. We used ancestral protein reconstruction to experimentally characterize evolutionary intermediates in the functional expansion of the polar amino acid-binding protein family, which has evolved to bind a variety of amino acids with high affinity and specificity. High-resolution crystal structures of an ancestral arginine-binding protein in complex with l-arginine and l-glutamine show that the promiscuous binding of l-glutamine is enabled by multi-scale conformational plasticity, water-mediated interactions, and selection of an alternative conformational substate productive for l-glutamine binding. Evolution of specialized glutamine-binding proteins from this ancestral protein was achieved by displacement of water molecules from the protein-ligand interface, reducing the entropic penalty associated with the promiscuous interaction. These results provide a structural and thermodynamic basis for the co-option of a promiscuous interaction in the evolution of binding specificity.

  7. Ancestral informative marker selection and population structure visualization using sparse Laplacian eigenfunctions.

    Directory of Open Access Journals (Sweden)

    Jun Zhang

    Full Text Available Identification of a small panel of population structure informative markers can reduce genotyping cost and is useful in various applications, such as ancestry inference in association mapping, forensics and evolutionary theory in population genetics. Traditional methods to ascertain ancestral informative markers usually require the prior knowledge of individual ancestry and have difficulty for admixed populations. Recently Principal Components Analysis (PCA has been employed with success to select SNPs which are highly correlated with top significant principal components (PCs without use of individual ancestral information. The approach is also applicable to admixed populations. Here we propose a novel approach based on our recent result on summarizing population structure by graph laplacian eigenfunctions, which differs from PCA in that it is geometric and robust to outliers. Our approach also takes advantage of the priori sparseness of informative markers in the genome. Through simulation of a ring population and the real global population sample HGDP of 650K SNPs genotyped in 940 unrelated individuals, we validate the proposed algorithm at selecting most informative markers, a small fraction of which can recover the similar underlying population structure efficiently. Employing a standard Support Vector Machine (SVM to predict individuals' continental memberships on HGDP dataset of seven continents, we demonstrate that the selected SNPs by our method are more informative but less redundant than those selected by PCA. Our algorithm is a promising tool in genome-wide association studies and population genetics, facilitating the selection of structure informative markers, efficient detection of population substructure and ancestral inference.

  8. Distinct actions of ancestral vinclozolin and juvenile stress on neural gene expression in the male rat

    Directory of Open Access Journals (Sweden)

    Ross eGillette

    2015-03-01

    Full Text Available Exposure to the endocrine disrupting chemical vinclozolin during gestation of an F0 generation and/or chronic restraint stress during adolescence of the F3 descendants affects behavior, physiology, and gene expression in the brain. Genes related to the networks of growth factors, signaling peptides and receptors, steroid hormone receptors and enzymes, and epigenetic related factors were measured using quantitative polymerase chain reaction via Taqman low density arrays targeting 48 genes in the central amygdaloid nucleus, medial amygdaloid nucleus, medial preoptic area, lateral hypothalamus, and the ventromedial nucleus of the hypothalamus. We found that growth factors are particularly vulnerable to ancestral exposure in the central and medial amygdala; restraint stress during adolescence affected neural growth factors in the medial amygdala. Signaling peptides were affected by both ancestral exposure and stress during adolescence primarily in hypothalamic nuclei. Steroid hormone receptors and enzymes were strongly affected by restraint stress in the medial preoptic area. Epigenetic related genes were affected by stress in the ventromedial hypothalamus and by both ancestral exposure and stress during adolescence independently in the central amygdala. It is noteworthy that the lateral hypothalamus showed no effects of either manipulation. Gene expression is discussed in the context of behavioral and physiological measures previously published.

  9. AAV ancestral reconstruction library enables selection of broadly infectious viral variants.

    Science.gov (United States)

    Santiago-Ortiz, J; Ojala, D S; Westesson, O; Weinstein, J R; Wong, S Y; Steinsapir, A; Kumar, S; Holmes, I; Schaffer, D V

    2015-12-01

    Adeno-associated virus (AAV) vectors have achieved clinical efficacy in treating several diseases. However, enhanced vectors are required to extend these landmark successes to other indications and protein engineering approaches may provide the necessary vector improvements to address such unmet medical needs. To generate new capsid variants with potentially enhanced infectious properties and to gain insights into AAV's evolutionary history, we computationally designed and experimentally constructed a putative ancestral AAV library. Combinatorial variations at 32 amino acid sites were introduced to account for uncertainty in their identities. We then analyzed the evolutionary flexibility of these residues, the majority of which have not been previously studied, by subjecting the library to iterative selection on a representative cell line panel. The resulting variants exhibited transduction efficiencies comparable to the most efficient extant serotypes and, in general, ancestral libraries were broadly infectious across the cell line panel, indicating that they favored promiscuity over specificity. Interestingly, putative ancestral AAVs were more thermostable than modern serotypes and did not use sialic acids, galactose or heparan sulfate proteoglycans for cellular entry. Finally, variants mediated 19- to 31-fold higher gene expression in the muscle compared with AAV1, a clinically used serotype for muscle delivery, highlighting their promise for gene therapy. PMID:26186661

  10. Ancestral sleep.

    Science.gov (United States)

    de la Iglesia, Horacio O; Moreno, Claudia; Lowden, Arne; Louzada, Fernando; Marqueze, Elaine; Levandovski, Rosa; Pilz, Luisa K; Valeggia, Claudia; Fernandez-Duque, Eduardo; Golombek, Diego A; Czeisler, Charles A; Skene, Debra J; Duffy, Jeanne F; Roenneberg, Till

    2016-04-01

    While we do not yet understand all the functions of sleep, its critical role for normal physiology and behaviour is evident. Its amount and temporal pattern depend on species and condition. Humans sleep about a third of the day with the longest, consolidated episode during the night. The change in lifestyle from hunter-gatherers via agricultural communities to densely populated industrialized centres has certainly affected sleep, and a major concern in the medical community is the impact of insufficient sleep on health [1,2]. One of the causal mechanisms leading to insufficient sleep is altered exposure to the natural light-dark cycle. This includes the wide availability of electric light, attenuated exposure to daylight within buildings, and evening use of light-emitting devices, all of which decrease the strength of natural light-dark signals that entrain circadian systems [3].

  11. Unravelling the Pacific Paradox

    OpenAIRE

    Teuea Toatu

    2002-01-01

    The performance of the Pacific Island countries (PICs) over the past two decades has been characterized by economic growth rates that are low on average yet extremely volatile. This has been so despite favorable levels of natural and human resources, high levels of public investment and aid, and reasonably prudent economic management – a phenomenon that has been labeled the “Pacific Paradox”. Questions may be posed therefore as to what accounts for this poor performance of the PICs, especiall...

  12. Evidence that the ancestral haplotype in Australian hemochromatosis patients may be associated with a common mutation in the gene

    Energy Technology Data Exchange (ETDEWEB)

    Crawford, D.H.G.; Powell, L.W.; Leggett, B.A. [Univ. of Queensland (Australia)] [and others

    1995-08-01

    Hemochromatosis (HC) is a common inherited disorder of iron metabolism for which neither the gene nor biochemical defect have yet been identified. The aim of this study was to look for clinical evidence that the predominant ancestral haplotype in Australian patients is associated with a common mutation in the gene. We compared indices of iron metabolism and storage in three groups of HC patients categorized according to the presence of the ancestral haplotype (i.e., patients with two copies, one copy, and no copies of the ancestral haplotype). We also examined iron indices in two groups of HC heterozygotes (those with the ancestral haplotype and those without) and in age-matched controls. These analyses indicate that (i) HC patients with two copies of the ancestral haplotype show significantly more severe expression of the disorder than those with one copy or those without, (ii) HC heterozygotes have partial clinical expression, which may be influenced by the presence of the ancestral haplotype in females but not in males, and (iii) the high population frequency of the HC gene may be the result of the selective advantage conferred by protecting heterozygotes against iron deficiency. 18 refs., 3 tabs.

  13. Geology of the Grove Mountains in East Antarctica--New evidence for the final suture of Gondwana Land

    Institute of Scientific and Technical Information of China (English)

    刘小汉; 赵越; 刘晓春; 俞良军

    2003-01-01

    Grove Mountains consists mainly of a series of high-grade (upper amphibolite to granulite facies) metamorphic rocks, including felsic granulite, granitic gneiss, mafic granulite lenses and charnockite, intruded by late tectonic gneissic granite and post-tectonic granodioritic veins. Geochemical analysis demonstrates that the charnockite, granitic gneiss and granite belonged to aluminous A type plutonic rocks, whereas the felsic and mafic granulite were from supracrustal materials as island-arc, oceanic island and middle oceanic ridge basalt. A few high-strained shear zones disperse in regional stable sub-horizontal foliated metamorphic rocks. Three generations of ductile deformation were identified, in which D1 is related to the event before Pan-African age, D2 corresponds to the regional granulite peak metamorphism, whereas D3 reflects ductile extension in late Pan-African orogenic period. The metamorphic reactions from granitic gneiss indicate a single granulite facies event, but 3 steps from mafic granulite, with P-T condition of M1 800℃, 9.3×105 Pa; M2 800-810℃, 6.4×105 Pa ; and M3 650℃ have been recognized. The U-Pb age data from representative granitic gneiss indicate (529±14) Ma of peak metamorphism, (534±5) Ma of granite emplacement, and (501±7) Ma of post-tectonic granodioritic veins. All these evidences suggest that a huge Pan-African aged mobile belt exists in the East Antarctic Shield extending from Prydz Bay via Grove Mountains to the southern Prince Charles Mountains. This orogenic belt could be the final suture during the Gondwana Land assemblage.

  14. The Brabant Massif as part of Armorica/Gondwana: UPb isotopic evidence from detrital zircons

    Science.gov (United States)

    Von Hoegen, J.; Kramm, U.; Walter, R.

    1990-12-01

    UPb isotopic ratios of zircons are used as time-dependent geochemical tracers for the formation of the zircons and for the sum of processes and their intensities effective for the disturbance of the UPb systems during the history of the zircons. By comparison detrital zircons can thus serve as indicators for the provenance of clastic sediments. The UPb systematics of 57 carefully selected fractions of detrital zircons from four Cambrian sandstones of the Ardennes and the Brabant Massif have been investigated. According to the UPb data features of color and shape of these zircons are suited for distinguishing to major groups: (1) colourless, mainly rounded, subordinately subhedral or euhedral zircons which are characterized by U contents below 300 ppm and by apparent 207Pb/ 235U ages between 0.53 Ga and 1.65 Ga. (2) reddish, generally subrounded to very well rounded zircons with U contents from 240 ppm to more than 800 ppm and apparent 207Pb/ 235U ages between 1.75 Ga and 2.4 Ga. From the group of colourless zircons only one fraction yields concordant UPb data and documents a Cadomian/PanAfrican crystal growth at 545 Ma. UPb data of the other colourless zircons arrange in a fan-shaped area in the Concordia diagram below Concordia and from 530 Ma to 600 Ma. Zircons with such UPb characteristics are well-known from Central and Southern Europe. They suggest a strong Cadomian/Pan-African influence. The reddish zircons are dominantly derived from Archean to Early Proterozoic crystalline rocks. Based on these results and on comparison with U-Pb data of other detrital zircons the Ardennes and the Brabant Massif must be regarded to be coherent to the Gondwana continental plate before the Caledonian orogeny.

  15. Neoproterozoic to Lower Palaeozoic successions of the Tandilia System in Argentina: implication for the palaeotectonic framework of southwest Gondwana

    Science.gov (United States)

    Zimmermann, Udo; Poiré, Daniel G.; Peral, Lucía Gómez

    2011-04-01

    margin fringing Gondwana ("Terra Australis Orogen") as a retro-arc or retro-arc foreland basin.

  16. Kinematic constraints on buckling a lithospheric-scale orocline along the northern margin of Gondwana: A geologic synthesis

    Science.gov (United States)

    Weil, A. Brandon; Gutiérrez-Alonso, G.; Johnston, S. T.; Pastor-Galán, D.

    2013-01-01

    The Paleozoic Variscan orogeny was a large-scale collisional event involving amalgamation of multiple continents and micro-continents. Existing data, suggests oroclinal buckling of an originally near-linear convergent margin during the last stages of Variscan deformation in the late Paleozoic. Closure of the Rheic Ocean resulted in E-W shortening (present-day coordinates) in the Carboniferous, producing a near linear N-S trending, east-verging belt. Subsequent N-S shortening near the Carb-Permian boundary resulted in oroclinal buckling. This late-stage orogenic event remains an enigmatic part of final Pangea amalgamation. The present-day arc curvature of the Variscan has inspired many tectonic models, with little agreement between them. While there is general consensus that two separate phases of deformation occurred, various models consider that curvature was caused by: dextral transpression around a Gondwana indentor; strike-slip wrench tectonics; or a change in tectonic transport direction due to changing stress fields. More recent models explain the curvature as an orocline, with potentially two opposite-facing bends, caused by secondary rotations. Deciphering the kinematic history of curved orogens is difficult, and requires establishment of two deformation phases: an initial compressive phase that forms a relatively linear belt, and a second phase that causes vertical-axis rotation of the orogenic limbs. Historically the most robust technique to accurately quantify vertical axis-rotation in curved orogens is paleomagnetic analysis, but recently other types of data, including fracture, geochemical, petrologic, paleo-current and calcite twin data, have been used to corroborate secondary buckling. A review of existing and new Variscan data from Iberia is presented that argues for secondary buckling of an originally linear orogenic system. Together, these data constrain oroclinal buckling of the Cantabrian Orocline to have occurred in about 10 Ma during the

  17. Evolution of sexes from an ancestral mating-type specification pathway.

    Directory of Open Access Journals (Sweden)

    Sa Geng

    2014-07-01

    Full Text Available Male and female sexes have evolved repeatedly in eukaryotes but the origins of dimorphic sexes and their relationship to mating types in unicellular species are not understood. Volvocine algae include isogamous species such as Chlamydomonas reinhardtii, with two equal-sized mating types, and oogamous multicellular species such as Volvox carteri with sperm-producing males and egg-producing females. Theoretical work predicts genetic linkage of a gamete cell-size regulatory gene(s to an ancestral mating-type locus as a possible step in the evolution of dimorphic gametes, but this idea has not been tested. Here we show that, contrary to predictions, a single conserved mating locus (MT gene in volvocine algae-MID, which encodes a RWP-RK domain transcription factor-evolved from its ancestral role in C. reinhardtii as a mating-type specifier, to become a determinant of sperm and egg development in V. carteri. Transgenic female V. carteri expressing male MID produced functional sperm packets during sexual development. Transgenic male V. carteri with RNA interference (RNAi-mediated knockdowns of VcMID produced functional eggs, or self-fertile hermaphrodites. Post-transcriptional controls were found to regulate cell-type-limited expression and nuclear localization of VcMid protein that restricted its activity to nuclei of developing male germ cells and sperm. Crosses with sex-reversed strains uncoupled sex determination from sex chromosome identity and revealed gender-specific roles for male and female mating locus genes in sexual development, gamete fitness and reproductive success. Our data show genetic continuity between the mating-type specification and sex determination pathways of volvocine algae, and reveal evidence for gender-specific adaptations in the male and female mating locus haplotypes of Volvox. These findings will enable a deeper understanding of how a master regulator of mating-type determination in an ancestral unicellular species was

  18. The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida is ancestral within the deuterostomes

    Directory of Open Access Journals (Sweden)

    Lanfear Robert

    2009-05-01

    Full Text Available Abstract Background Mitochondrial genome comparisons contribute in multiple ways when inferring animal relationships. As well as primary sequence data, rare genomic changes such as gene order, shared gene boundaries and genetic code changes, which are unlikely to have arisen through convergent evolution, are useful tools in resolving deep phylogenies. Xenoturbella bocki is a morphologically simple benthic marine worm recently found to belong among the deuterostomes. Here we present analyses comparing the Xenoturbella bocki mitochondrial gene order, genetic code and control region to those of other metazoan groups. Results The complete mitochondrial genome sequence of Xenoturbella bocki was determined. The gene order is most similar to that of the chordates and the hemichordates, indicating that this conserved mitochondrial gene order might be ancestral to the deuterostome clade. Using data from all phyla of deuterostomes, we infer the ancestral mitochondrial gene order for this clade. Using inversion and breakpoint analyses of metazoan mitochondrial genomes, we test conflicting hypotheses for the phylogenetic placement of Xenoturbella and find a closer affinity to the hemichordates than to other metazoan groups. Comparative analyses of the control region reveal similarities in the transcription initiation and termination sites and origin of replication of Xenoturbella with those of the vertebrates. Phylogenetic analyses of the mitochondrial sequence indicate a weakly supported placement as a basal deuterostome, a result that may be the effect of compositional bias. Conclusion The mitochondrial genome of Xenoturbella bocki has a very conserved gene arrangement in the deuterostome group, strikingly similar to that of the hemichordates and the chordates, and thus to the ancestral deuterostome gene order. Similarity to the hemichordates in particular is suggested by inversion and breakpoint analysis. Finally, while phylogenetic analyses of the

  19. Contrasting determinants of abundance in ancestral and colonized ranges of an invasive brood parasite

    Science.gov (United States)

    Hahn, D.C.; O'Connor, R.J.

    2002-01-01

    Avian species distributions are typically regarded as constrained by spatially extensive variables such as climate, habitat, spatial patchiness, and microhabitat attributes. We hypothesized that the distribution of a brood parasite depends as strongly on host distribution patterns as on biophysical factors and examined this hypothesis with respect to the national distribution of the Brown-headed Cowbird (Molothrus ater). We applied a classification and regression (CART) analysis to data from the Breeding Bird Survey (BBS) and the Christmas Bird Count (CBC) and derived hierarchically organized statistical models of the influence of climate and weather, cropping and land use, and host abundance and distribution on the distribution of the Brown-headed Cowbird within the conterminous United States. The model accounted for 47.2% of the variation in cowbird incidence, and host abundance was the top predictor with an R2 of 18.9%. The other predictors identified by the model (crops 15.7%, weather and climate 14.3%, and region 9.6%) fit the ecological profile of this cowbird. We showed that host abundance was independent of these environmental predictors of cowbird distribution. At the regional scale host abundance played a very strong role in determining cowbird abundance in the cowbird?s colonized range east and west of their ancestral range in the Great Plains (26.6%). Crops were not a major predictor for cowbirds in their ancestral range, although they are the most important predictive factor (33%) for the grassland passerines that are the cowbird?s ancestral hosts. Consequently our findings suggest that the distribution of hosts does indeed take precedence over habitat attributes in shaping the cowbird?s distribution at a national scale, within an envelope of constraint set by biophysical factors.

  20. The mammary gland-specific marsupial ELP and eutherian CTI share a common ancestral gene

    Directory of Open Access Journals (Sweden)

    Pharo Elizabeth A

    2012-06-01

    Full Text Available Abstract Background The marsupial early lactation protein (ELP gene is expressed in the mammary gland and the protein is secreted into milk during early lactation (Phase 2A. Mature ELP shares approximately 55.4% similarity with the colostrum-specific bovine colostrum trypsin inhibitor (CTI protein. Although ELP and CTI both have a single bovine pancreatic trypsin inhibitor (BPTI-Kunitz domain and are secreted only during the early lactation phases, their evolutionary history is yet to be investigated. Results Tammar ELP was isolated from a genomic library and the fat-tailed dunnart and Southern koala ELP genes cloned from genomic DNA. The tammar ELP gene was expressed only in the mammary gland during late pregnancy (Phase 1 and early lactation (Phase 2A. The opossum and fat-tailed dunnart ELP and cow CTI transcripts were cloned from RNA isolated from the mammary gland and dog CTI from cells in colostrum. The putative mature ELP and CTI peptides shared 44.6%-62.2% similarity. In silico analyses identified the ELP and CTI genes in the other species examined and provided compelling evidence that they evolved from a common ancestral gene. In addition, whilst the eutherian CTI gene was conserved in the Laurasiatherian orders Carnivora and Cetartiodactyla, it had become a pseudogene in others. These data suggest that bovine CTI may be the ancestral gene of the Artiodactyla-specific, rapidly evolving chromosome 13 pancreatic trypsin inhibitor (PTI, spleen trypsin inhibitor (STI and the five placenta-specific trophoblast Kunitz domain protein (TKDP1-5 genes. Conclusions Marsupial ELP and eutherian CTI evolved from an ancestral therian mammal gene before the divergence of marsupials and eutherians between 130 and 160 million years ago. The retention of the ELP gene in marsupials suggests that this early lactation-specific milk protein may have an important role in the immunologically naïve young of these species.

  1. Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra

    Directory of Open Access Journals (Sweden)

    Azevedo Nathália F

    2012-03-01

    Full Text Available Abstract Background Xenarthra (sloths, armadillos and anteaters represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autosomes and X-chromosome specific probes on metaphases of two three-toed sloths: Bradypus torquatus and B. variegatus. These species represent the fourth of the five extant Xenarthra families to be studied with this approach. Results Eleven human chromosomes were conserved as one block in both B. torquatus and B. variegatus: (HSA 5, 6, 9, 11, 13, 14, 15, 17, 18, 20, 21 and the X chromosome. B. torquatus, three additional human chromosomes were conserved intact (HSA 1, 3 and 4. The remaining human chromosomes were represented by two or three segments on each sloth. Seven associations between human chromosomes were detected in the karyotypes of both B. torquatus and B. variegatus: HSA 3/21, 4/8, 7/10, 7/16, 12/22, 14/15 and 17/19. The ancestral Eutherian association 16/19 was not detected in the Bradypus species. Conclusions Our results together with previous reports enabled us to propose a hypothetical ancestral Xenarthran karyotype with 48 chromosomes that would differ from the proposed ancestral Eutherian karyotype by the presence of the association HSA 7/10 and by the split of HSA 8 into three blocks, instead of the two found in the Eutherian ancestor. These same chromosome features point to the monophyly of Xenarthra, making this the second supraorder of placental mammals to have a chromosome signature supporting its monophyly.

  2. Tectonic insight based on anisotropy of magnetic susceptibility and compaction studies in the Sierras Australes thrust and fold belt (southwest Gondwana boundary, Argentina)

    Science.gov (United States)

    Arzadún, Guadalupe; Tomezzoli, Renata N.; Cesaretti, Nora N.

    2016-04-01

    The Sierras Australes fold and thrust belt (Buenos Aires Province, Argentina) was in the southwestern Gondwanaland margin during the Paleozoic. The Tunas Formation (Permian) is exposed along the eastern part of it and continues eastward beneath the Claromecó Basin. Anisotropy of magnetic susceptibility (AMS) and compaction studies are described and compared with previous paleomagnetic studies with the aim of determining direction and magnitude of the main stresses acting during the sedimentation of the Tunas Formation. The anisotropy ellipsoids are triaxial with oblate or prolate shapes, reflecting different stages of layer parallel shortening during the evolution of the basin. Kmax axes trend NW-SE, parallel to the fold axes, while Kmin move from a horizontal (base) to a vertical orientation at the top of the succession, showing a change from a tectonic to almost a sedimentary fabric. The magnitude of anisotropy and compaction degree decreases toward the top of the succession. The AMS results are consistent with the outcrop structural observations and the compaction and paleomagnetic data. Regional pattern indicates a compression from the SW along this part of Gondwana, with a migration of the orogenic front and attenuation toward the NE in the foreland basin during the Upper Paleozoic. This deformation, locally assigned to the San Rafael noncollisional orogenic phase, is the result of the latitudinal movements toward the Equator of Gondwana (southern plates) and Laurentia (northern plates) during the Permian. This movement is the result of a rearrangement of the microplates that collided with Gondwana during the Late Devonian, to configure Pangea during the Triassic.

  3. Did Patagonia collide against Gondwana in the Late Paleozoic? Some Insights From Magnetic Fabrics of Granitoids in the North Patagonian Massif.

    Science.gov (United States)

    Rapalini, A. E.; Lopez de Luchi, M. G.; Tomezzoli, R. N.

    2008-05-01

    The Paleozoic tectonic evolution of Patagonia has been a matter of much debate in the last two decades. There is no consensus on whether the North Patagonian Massif (NPM) was accreted by a frontal collision to Gondwana in the Late Paleozoic or if it shared a similar paleotectonic evolution with other Gondwana blocks during the Paleozoic. Different geologic, geochronologic, geophysical and structural data have been interpreted either as supporting or refuting the collisional model. Paleomagnetic data obtained so far is consistent with an authochtonous evolution since the Devonian, but it does not rule out relative displacements of up to 1500 km between Patagonia and Gondwana.Therefore, a Late Paleozoic frontal collision cannot be definitely ruled out on the basis of paleomagnetic data alone. As part of a muldisciplinary research project a magnetic fabric study, by means of the anisotropy of magnetic susceptibility (AMS), was carried out on Late Paleozoic granitoids exposed in northeastern NPM. Two main composite units were studied, the highly to variably foliated Yaminue Complex, poorly dated as Late Carboniferous and ranging in composition from tonalite to leuco-granite, and the much less deformed granodiorites to monzoganites of the Early Permian (283 Ma) Navarrete complex. While the former is composed of both ferro and paramagnetic units, with a dominance of the latter; the Navarrete plutons are basically ferromagnetic. Directional and scalar AMS results joined with meso and microstructural studies permitted the characterization of the deformational and magmatic fabric of the different units. An evolutionary picture of the succesive intrusive events in NPM emerged which confirms an important NNE-SSW contractional event associated with intrusion of the different units that compose the Yaminue Complex. This event ended before the intrusion of the Navarrete Complex, which is governed by a different stress regime. Our results fit the hypothesis of a collisional event

  4. Analysis of Ancestral and Functionally Relevant CD5 Variants in Systemic Lupus Erythematosus Patients

    OpenAIRE

    Maria Carmen Cenit; Mario Martínez-Florensa; Marta Consuegra; Lizette Bonet; Elena Carnero-Montoro; Noelia Armiger; Miguel Caballero-Baños; Maria Teresa Arias; Daniel Benitez; Norberto Ortego-Centeno; Enrique de Ramón; José Mario Sabio; García-Hernández, Francisco J; Carles Tolosa; Ana Suárez

    2014-01-01

    Objective: CD5 plays a crucial role in autoimmunity and is a well-established genetic risk factor of developing RA. Recently, evidence of positive selection has been provided for the CD5 Pro224-Val471 haplotype in East Asian populations. The aim of the present work was to further analyze the functional relevance of non-synonymous CD5 polymorphisms conforming the ancestral and the newly derived haplotypes (Pro224-Ala471 and Pro224-Val471, respectively) as well as to investigate the potential r...

  5. Ancestral heritage saves tribes during 1 April 2007 Solomon Islands tsunami

    Science.gov (United States)

    Fritz, Hermann M.; Kalligeris, Nikos

    2008-01-01

    The 1 April 2007 magnitude Ms 8.1 earthquake off the New Georgia Group in the Solomon Islands generated a tsunami that killed 52 with locally focused run-up heights of 12 m, local flow depths of 5 m as well as tectonic uplift up to 3.6 m and subsidence down to -1.5 m. A reconnaissance team deployed within one week investigated 65 coastal settlements on 13 remote Islands. The ancestral heritage ``run to high ground after an earthquake'' passed on to younger generations by survivors of smaller historic tsunamis triggered an immediate spontaneous self evacuation containing the death toll.

  6. Trans-Pacific Section

    Science.gov (United States)

    A trans-Pacific section along latitude 24.5°N is planned for 1985, with the field program tentatively scheduled for April 17 to June 27. The purpose of the expedition is to measure the transport of heat by ocean currents, to determine the net transport of water masses and estimate the meridional general circulation of the North Pacific, and to improve the mapping of tracer distributions in the deep North Pacific.Approximately 200 surface-to-bottom CTD/rosette stations will be occupied across the width of the ocean, with maximum station spacing of 80 km over abyssal plains, closing to 30-50 km over rough topography and boundaries. Water samples will be collected and analyzed on board for salinity, oxygen, and nutrients.

  7. Stroke and Native Hawaiians/Pacific Islanders

    Science.gov (United States)

    ... Population Profiles > Native Hawaiian/Other Pacific Islander > Stroke Stroke and Native Hawaiians/Pacific Islanders Native Hawaiians/Pacific ... non-Hispanic white adults to die from a stroke in 2010. In general, Native Hawaiian/Pacific Islander ...

  8. Abrupt spatial and geochemical changes in lamprophyre magmatism related to Gondwana fragmentation prior, during and after opening of the Tasman Sea

    DEFF Research Database (Denmark)

    van der Meer, Quinten; Storey, Michael; Scott, James;

    2016-01-01

    the inception of opening of the Tasman Sea. Magmatic quiescence followed until ~72–68Ma,when another swarmof dikes was emplaced. The composition of the dikes reveals a dramatic change in primary melt sources while continental extension and lithospheric thinning were ongoing. The 102–100 Ma South...... Westland dikes represent the last mafic calc-alkaline magmatism Associated with a long-lived history of the area as Gondwana's active margin. The 92–84 Ma North and 72–68 Ma Central Westland dike swarms on the other hand have strongly alkaline compositions interpreted as melts from an intraplate source...

  9. Magnetic fabric and microstructures of Late Paleozoic granitoids from the North Patagonian Massif: Evidence of a collision between Patagonia and Gondwana?

    Science.gov (United States)

    López de Luchi, Mónica G.; Rapalini, Augusto E.; Tomezzoli, Renata N.

    2010-10-01

    Widespread Late Paleozoic magmatism in northern Patagonia is a target to test hypotheses on the long standing question over the origin of Patagonia. In recent years, a dispute over whether it is an accreted crustal block that collided with Gondwana in Paleozoic times or an autochthonous part of South America has taken place. As part of a multidisciplinary study, an integrated microstructural and magnetic fabric study was carried out on the Late Carboniferous Yaminué Complex and the Early Permian Navarrete Plutonic Complex, both exposed in the northeastern corner of the North Patagonian Massif (40.5°S, 67.0°W). Other investigated units are the Late Carboniferous Tardugno Granodiorite, the newly defined Cabeza de Vaca Granite and the Late Permian San Martin pluton. Over 300 oriented cores from 60 sites were collected for anisotropy of magnetic susceptibility (AMS) measurements. A systematic analysis of around 100 petrographic thin sections was performed to characterize the microstructures of the different magmatic units. Microstructures in the Yaminué Complex are indicative of a transition from magmatic to solid-state deformation. Microstructures of the orthogneiss of tonalitic composition suggest an early stage in the emplacement history of this complex. The Cabeza de Vaca Granite, intrusive in Yaminué Complex, is the most evolved unit and records less intense high-temperature solid-state deformation which suggests that the stress field that controlled the emplacement of the Yaminué Complex outlasted it. According to petrologic and structural considerations, the Navarrete Plutonic Complex has been subdivided into three facies, i.e. Robaina, Guanacos and Aranda, respectively. Microstructures of the Navarrete Plutonic Complex are mostly magmatic to submagmatic, versus the solid-state fabric that characterizes the Robaina facies at the contact with the Yaminué Complex. Combined analyses of AMS and microstructural data lead us to suggest that the Yaminué Complex

  10. Pacific Coastal Salmon Recovery Fund

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Congress established the Pacific Coastal Salmon Recovery Fund (PCSRF) to monitor the restoration and conservation of Pacific salmon and steelhead populations and...

  11. Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure.

    Science.gov (United States)

    DeGiorgio, Michael; Rosenberg, Noah A

    2016-08-01

    In the last few years, several statistically consistent consensus methods for species tree inference have been devised that are robust to the gene tree discordance caused by incomplete lineage sorting in unstructured ancestral populations. One source of gene tree discordance that has only recently been identified as a potential obstacle for phylogenetic inference is ancestral population structure. In this article, we describe a general model of ancestral population structure, and by relying on a single carefully constructed example scenario, we show that the consensus methods Democratic Vote, STEAC, STAR, R(∗) Consensus, Rooted Triple Consensus, Minimize Deep Coalescences, and Majority-Rule Consensus are statistically inconsistent under the model. We find that among the consensus methods evaluated, the only method that is statistically consistent in the presence of ancestral population structure is GLASS/Maximum Tree. We use simulations to evaluate the behavior of the various consensus methods in a model with ancestral population structure, showing that as the number of gene trees increases, estimates on the basis of GLASS/Maximum Tree approach the true species tree topology irrespective of the level of population structure, whereas estimates based on the remaining methods only approach the true species tree topology if the level of structure is low. However, through simulations using species trees both with and without ancestral population structure, we show that GLASS/Maximum Tree performs unusually poorly on gene trees inferred from alignments with little information. This practical limitation of GLASS/Maximum Tree together with the inconsistency of other methods prompts the need for both further testing of additional existing methods and development of novel methods under conditions that incorporate ancestral population structure.

  12. Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure.

    Science.gov (United States)

    DeGiorgio, Michael; Rosenberg, Noah A

    2016-08-01

    In the last few years, several statistically consistent consensus methods for species tree inference have been devised that are robust to the gene tree discordance caused by incomplete lineage sorting in unstructured ancestral populations. One source of gene tree discordance that has only recently been identified as a potential obstacle for phylogenetic inference is ancestral population structure. In this article, we describe a general model of ancestral population structure, and by relying on a single carefully constructed example scenario, we show that the consensus methods Democratic Vote, STEAC, STAR, R(∗) Consensus, Rooted Triple Consensus, Minimize Deep Coalescences, and Majority-Rule Consensus are statistically inconsistent under the model. We find that among the consensus methods evaluated, the only method that is statistically consistent in the presence of ancestral population structure is GLASS/Maximum Tree. We use simulations to evaluate the behavior of the various consensus methods in a model with ancestral population structure, showing that as the number of gene trees increases, estimates on the basis of GLASS/Maximum Tree approach the true species tree topology irrespective of the level of population structure, whereas estimates based on the remaining methods only approach the true species tree topology if the level of structure is low. However, through simulations using species trees both with and without ancestral population structure, we show that GLASS/Maximum Tree performs unusually poorly on gene trees inferred from alignments with little information. This practical limitation of GLASS/Maximum Tree together with the inconsistency of other methods prompts the need for both further testing of additional existing methods and development of novel methods under conditions that incorporate ancestral population structure. PMID:27086043

  13. Palaeotsunamis in the Pacific Islands

    Science.gov (United States)

    Goff, J.; Chague-Goff, C.; Dominey-Howes, D.; McAdoo, B.; Cronin, S.; Bonte-Grapetin, Michael; Nichol, S.; Horrocks, M.; Cisternas, M.; Lamarche, G.; Pelletier, B.; Jaffe, B.; Dudley, W.

    2011-01-01

    The recent 29 September 2009 South Pacific and 27 February 2010 Chilean events are a graphic reminder that the tsunami hazard and risk for the Pacific Ocean region should not be forgotten. Pacific Islands Countries (PICs) generally have short (Elsevier B.V.

  14. On the Potential Origins of the High Stability of Reconstructed Ancestral Proteins.

    Science.gov (United States)

    Trudeau, Devin L; Kaltenbach, Miriam; Tawfik, Dan S

    2016-10-01

    Ancestral reconstruction provides instrumental insights regarding the biochemical and biophysical characteristics of past proteins. A striking observation relates to the remarkably high thermostability of reconstructed ancestors. The latter has been linked to high environmental temperatures in the Precambrian era, the era relating to most reconstructed proteins. We found that inferred ancestors of the serum paraoxonase (PON) enzyme family, including the mammalian ancestor, exhibit dramatically increased thermostabilities compared with the extant, human enzyme (up to 30 °C higher melting temperature). However, the environmental temperature at the time of emergence of mammals is presumed to be similar to the present one. Additionally, the mammalian PON ancestor has superior folding properties (kinetic stability)-unlike the extant mammalian PONs, it expresses in E. coli in a soluble and functional form, and at a high yield. We discuss two potential origins of this unexpectedly high stability. First, ancestral stability may be overestimated by a "consensus effect," whereby replacing amino acids that are rare in contemporary sequences with the amino acid most common in the family increases protein stability. Comparison to other reconstructed ancestors indicates that the consensus effect may bias some but not all reconstructions. Second, we note that high stability may relate to factors other than high environmental temperature such as oxidative stress or high radiation levels. Foremost, intrinsic factors such as high rates of genetic mutations and/or of transcriptional and translational errors, and less efficient protein quality control systems, may underlie the high kinetic and thermodynamic stability of past proteins.

  15. QTL linkage analysis of connected populations using ancestral marker and pedigree information.

    Science.gov (United States)

    Bink, Marco C A M; Totir, L Radu; ter Braak, Cajo J F; Winkler, Christopher R; Boer, Martin P; Smith, Oscar S

    2012-04-01

    The common assumption in quantitative trait locus (QTL) linkage mapping studies that parents of multiple connected populations are unrelated is unrealistic for many plant breeding programs. We remove this assumption and propose a Bayesian approach that clusters the alleles of the parents of the current mapping populations from locus-specific identity by descent (IBD) matrices that capture ancestral marker and pedigree information. Moreover, we demonstrate how the parental IBD data can be incorporated into a QTL linkage analysis framework by using two approaches: a Threshold IBD model (TIBD) and a Latent Ancestral Allele Model (LAAM). The TIBD and LAAM models are empirically tested via numerical simulation based on the structure of a commercial maize breeding program. The simulations included a pilot dataset with closely linked QTL on a single linkage group and 100 replicated datasets with five linkage groups harboring four unlinked QTL. The simulation results show that including parental IBD data (similarly for TIBD and LAAM) significantly improves the power and particularly accuracy of QTL mapping, e.g., position, effect size and individuals' genotype probability without significantly increasing computational demand.

  16. On the historical biogeography of global Galliformes: ancestral range and diversification patterns

    Institute of Scientific and Technical Information of China (English)

    Youhua; Chen

    2014-01-01

    Background: In this study, the ancestral distributional ranges and the tempo of diversification patterns of global Galliformes were investigated.Methods: Different diversification models characterizing possible tempo patterns were fitted and compared onto the phylogenetic tree for the 197 Galliforme species, consisting of a constant-speciation and constant-extinction model(CONSTANT), a decreasing-speciation and constant-extinction model(SPVAR), a constant-speciation and increasing-extinction model(EXVAR) and a decreasing-speciation and increasing-extinction model(BOTHVAR).Ancestral range reconstruction was conducted using the dispersal-extinction-cladogenesis model.Results: A constant-diversification-rate(CONSTANT) model best quantified the historical speciation patterns of this avian assemblage through model selection. Clade age and species richness are significantly and positively correlated. The most recent common ancestor for Galliformes species was originally found in the disjunctive regions between Southeast Asia and North America. High-frequency dispersal events were identified across the whole evolutionary time.Conclusions: The constant diversification rate for global Galliforme species implied that there were no diversification rate-shifting trends for Galliformes species. The present study may contribute to the understanding of the ecology and diversity patterns of Galliformes from the perspective of historical biogeography, although some limitations existed.

  17. On the historical biogeography of global Galliformes:ancestral range and diversification patterns

    Institute of Scientific and Technical Information of China (English)

    Youhua Chen

    2014-01-01

    Background:In this study, the ancestral distributional ranges and the tempo of diversification patterns of global Galliformes were investigated. Methods:Different diversification models characterizing possible tempo patterns were fitted and compared onto the phylogenetic tree for the 197 Galliforme species, consisting of a constant-speciation and constant-extinction model (CONSTANT), a decreasing-speciation and constant-extinction model (SPVAR), a constant-speciation and increasing-extinction model (EXVAR) and a decreasing-speciation and increasing-extinction model (BOTHVAR). Ancestral range reconstruction was conducted using the dispersal-extinction-cladogenesis model. Results:A constant-diversification-rate (CONSTANT) model best quantified the historical speciation patterns of this avian assemblage through model selection. Clade age and species richness are significantly and positively correlated. The most recent common ancestor for Galliformes species was originally found in the disjunctive regions between Southeast Asia and North America. High-frequency dispersal events were identified across the whole evolutionary time. Conclusions:The constant diversification rate for global Gal iforme species implied that there were no diversification rate-shifting trends for Galliformes species. The present study may contribute to the understanding of the ecology and diversity patterns of Galliformes from the perspective of historical biogeography, although some limitations existed.

  18. Bearing the unbearable: ancestral transmission through dreams and moving metaphors in the analtyic field.

    Science.gov (United States)

    Pickering, Judith

    2012-11-01

    This paper explores how untold and unresolved intergenerational trauma may be transmitted through unconscious channels of communication, manifesting in the dreams of descendants. Unwitting carriers for that which was too horrific for their ancestors to bear, descendants may enter analysis through an unconscious need to uncover past secrets, piece together ancestral histories before the keys to comprehending their terrible inheritance die with their forebears. They seek the relational containment of the analytic relationship to provide psychological conditions to bear the unbearable, know the unknowable, speak the unspeakable and redeem the unredeemable. In the case of 'Rachael', initial dreams gave rise to what Hobson (1984) called 'moving metaphors of self' in the analytic field. Dream imagery, projective and introjective processes in the transference-countertransference dynamics gradually revealed an unknown ancestral history. I clarify the back and forth process from dream to waking dream thoughts to moving metaphors and differentiate the moving metaphor from a living symbol. I argue that the containment of the analytic relationship nested within the security of the analytic space is a necessary precondition for such healing processes to occur.

  19. The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome.

    Science.gov (United States)

    Nelson, Matthew N; Parkin, Isobel A P; Lydiate, Derek J

    2011-01-01

    The organisation of the Sinapis alba genome, comprising 12 linkage groups (n = 12), was compared with the Brassicaceae ancestral karyotype (AK) genomic blocks previously described in other crucifer species. Most of the S. alba genome falls into conserved triplicated genomic blocks that closely match the AK-defined genomic blocks found in other crucifer species including the A, B, and C genomes of closely related Brassica species. In one instance, an S. alba linkage group (S05) was completely collinear with one AK chromosome (AK1), the first time this has been observed in a member of the Brassiceae tribe. However, as observed for other members of the Brassiceae tribe, ancestral genomic blocks were fragmented in the S. alba genome, supporting previously reported comparative chromosome painting describing rearrangements of the AK karyotype prior to the divergence of the Brassiceae from other crucifers. The presented data also refute previous phylogenetic reports that suggest S. alba was more closely related to Brassica nigra (B genome) than to B. rapa (A genome) and B. oleracea (C genome). A comparison of the S. alba and Arabidopsis thaliana genomes revealed many regions of conserved gene order, which will facilitate access to the rich genomic resources available in the model species A. thaliana for genetic research in the less well-resourced crop species S. alba.

  20. A FORTRAN subroutine to compute inbreeding and kinship coefficients according to the number of ancestral generations.

    Science.gov (United States)

    Vu Tien Khang, J

    1989-07-01

    This paper presents a FORTRAN IV subroutine to calculate inbreeding and kinship coefficients from pedigree information in a diploid population without self-fertilization. The user can specify the number of ancestral generations to be taken into account. It is thus possible to determine contributions of succeeding ancestral generations to the inbreeding and kinship coefficients under consideration. The subroutine is based on a recursive procedure that generates systematically all paths connecting two individuals. NP and NM, whose kinship coefficient is to be calculated (or between the father NP and the mother NM of the individual whose inbreeding coefficient is to be calculated). These paths obey the following conditions: (i) a given path does not contain the same parent-offspring link more than once; (ii) the vertex of a path is an ancestor common to individuals NP and NM, with a rank lower or equal to the parameter specified in input. Constraints regarding the size of the corpus of genealogical data and the storage method are discussed, as well as the interest of this subroutine compared to the existing ones. An example of application is given.

  1. Ancestral origin of the ATTCT repeat expansion in spinocerebellar ataxia type 10 (SCA10.

    Directory of Open Access Journals (Sweden)

    Teresa Almeida

    Full Text Available Spinocerebellar ataxia type 10 (SCA10 is an autosomal dominant neurodegenerative disease characterized by cerebellar ataxia and seizures. The disease is caused by a large ATTCT repeat expansion in the ATXN10 gene. The first families reported with SCA10 were of Mexican origin, but the disease was soon after described in Brazilian families of mixed Portuguese and Amerindian ancestry. The origin of the SCA10 expansion and a possible founder effect that would account for its geographical distribution have been the source of speculation over the last years. To unravel the mutational origin and spread of the SCA10 expansion, we performed an extensive haplotype study, using closely linked STR markers and intragenic SNPs, in families from Brazil and Mexico. Our results showed (1 a shared disease haplotype for all Brazilian and one of the Mexican families, and (2 closely-related haplotypes for the additional SCA10 Mexican families; (3 little or null genetic distance in small normal alleles of different repeat sizes, from the same SNP lineage, indicating that they are being originated by a single step mechanism; and (4 a shared haplotype for pure and interrupted expanded alleles, pointing to a gene conversion model for its generation. In conclusion, we show evidence for an ancestral common origin for SCA10 in Latin America, which might have arisen in an ancestral Amerindian population and later have been spread into the mixed populations of Mexico and Brazil.

  2. Bearing the unbearable: ancestral transmission through dreams and moving metaphors in the analtyic field.

    Science.gov (United States)

    Pickering, Judith

    2012-11-01

    This paper explores how untold and unresolved intergenerational trauma may be transmitted through unconscious channels of communication, manifesting in the dreams of descendants. Unwitting carriers for that which was too horrific for their ancestors to bear, descendants may enter analysis through an unconscious need to uncover past secrets, piece together ancestral histories before the keys to comprehending their terrible inheritance die with their forebears. They seek the relational containment of the analytic relationship to provide psychological conditions to bear the unbearable, know the unknowable, speak the unspeakable and redeem the unredeemable. In the case of 'Rachael', initial dreams gave rise to what Hobson (1984) called 'moving metaphors of self' in the analytic field. Dream imagery, projective and introjective processes in the transference-countertransference dynamics gradually revealed an unknown ancestral history. I clarify the back and forth process from dream to waking dream thoughts to moving metaphors and differentiate the moving metaphor from a living symbol. I argue that the containment of the analytic relationship nested within the security of the analytic space is a necessary precondition for such healing processes to occur. PMID:23130614

  3. Modelos de cinemática de placas para Antártida durante la ruptura de Gondwana: una revisión Plate kinematic models for Antactica during Gondwana break-up: A review

    Directory of Open Access Journals (Sweden)

    M.E. Ghidella

    2007-12-01

    Full Text Available La historia de apertura del mar de Weddell y del Oc éano Atlántico Sur es crítica para comprender la ruptura de Gondwana y la evolución geológica de Antártida desde el Jurásico temprano. La dispersión de los fragmentos gondwánicos es importante para entender la circulación oceánica del pasado, descifrar la historia de las cuencas sedimentarias ubicadas al Este de la Península Antártica y establecer posibles rutas de dispersión de flora y fauna entre los continentes australes. Desafortunadamente, la tectónica del mar de Weddell es difícil de resolver debido a la escasez de datos y a su inherente complejidad. Aunque se ha alcanzado un progreso muy grande el los últimos 20 años, con nuevos datos aeromagnéticos marinos y mapas de gravedad derivada de altimetría satelital, todavía hay varios modelos en consideración que difieren en edades corticales y esquemas de apertura. En este trabajo se presenta una revisión de cuatro de esos modelos. Utilizando polos de rotación, isócronas sintéticas y líneas de flujo, se ha procedido hacia atrás en el tiempo comenzando en la anomalía magnética 34 (83,5 millones de años, porque la misma está relativamente bien definida en los océanos, y se presentan mapas de edades de corteza que muestran la trayectoria estimada del punto triple Sudamérica - Antártida - África para cada modelo. Asimismo se muestran gráficos de las reconstrucciones en cuatro épocas elegidas para todos los modelos usando la misma proyección y escala para facilitar la comparación. La variedad de suposiciones simplificadoras que debieron hacerse en cada modelo, recurriendo a fragmentación de placas para considerar las numerosas cuencas de syn-rift y períodos de extensión, son fuertes indicadores de que la tectónica de placas rígidas es un modelo demasiado simple para el presente problema.The opening history of both the Weddell Sea and South Atlantic Ocean is critical to understand the break-up of

  4. Early Callovian ingression in southwestern Gondwana. Palaeoenvironmental evolution of the carbonate ramp (Calabozo Formation) in southwestern Mendoza, Neuquen basin, Argentina

    Science.gov (United States)

    Armella, Claudia; Cabaleri, Nora G.; Cagnoni, Mariana C.; Panarello, Héctor O.

    2013-08-01

    The carbonatic sequence of the Calabozo Formation (Lower Callovian) developed in southwestern Gondwana, within the northern area of the Neuquén basin, and is widespread in thin isolated outcrops in southwestern Mendoza province, Argentina. This paper describes the facies, microfacies and geochemical-isotopic analysis carried out in five studied localities, which allowed to define the paleoenvironmental conditions of a homoclinal shallow ramp model, highly influenced by sea level fluctuations, where outer, mid and inner ramp subenvironments were identified. The outer ramp subenvironment was only recognized in the south of the depocenter and is characterized by proximal outer ramp facies with shale levels and interbedded mudstone and packstone layers. The mid ramp subenvironment is formed by low energy facies (wackestone) affected by storms (packstones, grainstones and floatstones). The inner ramp subenvironment is the most predominant and is characterized by tidal flat facies (wackestones, packstones and grainstones) over which a complex of shoals (grainstones and packstones) dissected by tidal channels (packstone, grainstones and floatstones) developed. In the north area, protected environment facies were recorded (bioturbated wackestones and packstones). The vertical distribution of facies indicates that the paleoenvironmental evolution of the Calabozo Formation results from a highstand stage in the depocenter, culminating in a supratidal environment, with stromatolitic levels interbedded with anhydrite originated under restricted water circulation conditions due to a progressive isolation of the basin. δ13C and δ18O values of the carbonates of the Calabozo Formation suggest an isotopic signature influenced by local palaeoenvironmental parameters and diagenetic overprints. The δ13C and δ18O oscillations between the carbonates of the different studied sections are related with lateral facies variations within the carbonate ramp accompanied with dissimilar

  5. Control of deep lithospheric roots on crustal scale GOCE gravity and gradient fields evident in Gondwana reconstructions

    Science.gov (United States)

    Braitenberg, Carla; Mariani, Patrizia

    2015-04-01

    implications from complete Gondwana GOCE-products reconstructions and link to lithospheric roots. Proceedings of 5th International GOCE User Workshop, 25 - 28 November 2014. Braitenberg, C. (2015). Exploration of tectonic structures with GOCE in Africa and across-continents. Int. J.Appl. Earth Observ. Geoinf. 35, 88-95. http://dx.doi.org/10.1016/j.jag.2014.01.013 Braitenberg, C. (2015). A grip on geological units with GOCE, IAG Symp. 141, in press.

  6. Post-Gondwana geomorphic evolution of southwestern Africa: Implications for hte controls on landscape development from observations and numerical experiments

    Science.gov (United States)

    Gilchrist, Alan R.; Kooi, Henk; Beaumont, Christopher

    1994-01-01

    The relationship between morphology and surficial geology is used to quantify the denudation that has occurred across southwestern Africa sicne the fragmentation of Gondwana during the Early Mesozoic. Two main points emerge. Signficant denudation, of the order of kilometers, is widespread except in the Kalahari region of the continental interior. The denudation is systematically distributed so that the continental exterior catchment, draining directly to the Cape basin, is denuded to a greater depth than the interior catchment inland of the Great Escarpment. The analysis also implies tha the majority of the denudation occurred before the beginning of the Cenozoic for both teh exerior and interior catchments. Existing models of landscape development are reviewed, and implications of the denudation chronology are incorporated into a revised conceptual model. This revision implies tha thte primary effect of rifting on the subsequent landscape evolution is that it generates two distinct drainage regimes. A marginal upwarp, or rift flank uplift, separates rejuvenated rivers that drain into the subsiding rift from rivers in the continetal interior that are deflected but not rejuvenated. The two catchments evolve independently unless they are integrated by breaching of hte marginal upwarp. If this occurs, the exterior baselevel is communicated to the interior catchment that is denuded accordingly. Denudation rates generally decrease as the margin evolves, and this decrease is reinforced by the exposure of substrate that is resistant to denudation and/or a change to a more arid climate. The observations do not reveal a particular style of smaller-scale landscape evolution, sucha s escarpment retreat, that is responsible for the differential denudation across the region. It is proposed that numerical model experiments, which reflect the observational insights at the large scale, may identify the smaller-scale controls on escarpment development if the model and natural

  7. Post-Gondwana geomorphic evolution of southwestern Africa: Implications for hte controls on landscape development from observations and numerical experiments

    Science.gov (United States)

    Gilchrist, Alan R.; Kooi, Henk; Beaumont, Christopher

    1994-06-01

    The relationship between morphology and surficial geology is used to quantify the denudation that has occurred across southwestern Africa sicne the fragmentation of Gondwana during the Early Mesozoic. Two main points emerge. Signficant denudation, of the order of kilometers, is widespread except in the Kalahari region of the continental interior. The denudation is systematically distributed so that the continental exterior catchment, draining directly to the Cape basin, is denuded to a greater depth than the interior catchment inland of the Great Escarpment. The analysis also implies tha the majority of the denudation occurred before the beginning of the Cenozoic for both teh exerior and interior catchments. Existing models of landscape development are reviewed, and implications of the denudation chronology are incorporated into a revised conceptual model. This revision implies tha thte primary effect of rifting on the subsequent landscape evolution is that it generates two distinct drainage regimes. A marginal upwarp, or rift flank uplift, separates rejuvenated rivers that drain into the subsiding rift from rivers in the continetal interior that are deflected but not rejuvenated. The two catchments evolve independently unless they are integrated by breaching of hte marginal upwarp. If this occurs, the exterior baselevel is communicated to the interior catchment that is denuded accordingly. Denudation rates generally decrease as the margin evolves, and this decrease is reinforced by the exposure of substrate that is resistant to denudation and/or a change to a more arid climate. The observations do not reveal a particular style of smaller-scale landscape evolution, sucha s escarpment retreat, that is responsible for the differential denudation across the region. It is proposed that numerical model experiments, which reflect the observational insights at the large scale, may identify the smaller-scale controls on escarpment development if the model and natural

  8. Australia in the Pacific.

    Science.gov (United States)

    Kennedy, Kerry; Welch, Ian

    1988-01-01

    Discusses Australia's growth since European settlement and its development into a major world trader in industrial and high technology raw materials. Examines the country's expanding relations with New Zealand and other Pacific states which is the outgrowth of the realization that all will gain from greater international cooperation. (GEA)

  9. The East Pacific Rise

    NARCIS (Netherlands)

    NN,

    1961-01-01

    Evidence gathered by expeditions of the University of California’s Scripps Institution of Oceanography during the International Geophysical Year suggests that the East Pacific Rise is one of the largest physical structures on earth. It runs in a sickle-shaped curve from near New Zealand 8,000 miles

  10. South Pacific newsletter : 23

    OpenAIRE

    Kagoshima University Research Center for the Pacific Islands; カゴシマ ダイガク コクサイ トウショ キョウイク ケンキュウ センター; 鹿児島大学国際島嶼教育研究センター

    2012-01-01

    Kagoshima University and Kagoshima : Learning Curves / NARSEY Wadan Lal (Visiting Professor, Research Center for the Pacific Islands) [International Symposium] Small Islands : Ecology, Taxonomy and Ethnobiology [International Workshop] Interaction between Nature and People in the Coastal Areas of Fiji : A Case Study of an Important Industrial Species [Research Seminars] Where the Japanese Pandanus from? Botanical topics of Pandanaceae / MIYAMOTO Junko (Graduate School of ...

  11. Eolian deposits of the southwestern margin of the Botucatú paleoerg: Reconstruction of the Gondwana landscape in Central Northern Argentina

    Science.gov (United States)

    Peri, V. Gisel; Naipauer, Maximiliano; Pimentel, Marcio; Barcelona, Hernan

    2016-06-01

    The Mesozoic Botucatú paleoerg at the southwestern margin of Gondwana includes a succession of eolian dunes cross-strata which are presently exposed in Otumpa Hills (Central Northern Argentina). Here, the architectural facies, petrology, and provenance of those rocks were studied in order to investigate depositional environments and paleoclimates. The stratigraphic sequence included basal eolian two-dimensional crescentic dunes (Slp) overlain by three-dimensional crescentic dunes of smaller scale (Smt). These were correlated with the Upper Member Rivera of the Tacuarembó Formation (Uruguay), or its equivalent in Brazil, the Botucatú Formation. These outcrops partially mark the southwestern margin of the Botucatú paleoerg along the Chaco-Paraná Basin boundary. The paleocurrents from the W, NW, and SW and the U-Pb ages of detrital zircons indicate a main Pampean cratonic and secondary Andean magmatic arc (180 Ma) source. A detrital zircon of 180 Ma by U-Pb limits a maximum depositional age at 180 Ma (Toarcian) for facies Slp. Upwards, the phreatic silcrete and calcrete indicate semiarid conditions during the Paleocene, which are correlated with the Queguay Formation of Uruguay. A saprolite paleoweathering profile, recording wet tropical-hyper-tropical climate at the Early Eocene and representing the Gondwana landscape and climate conditions, crowns the sequence. This study represents the first provenance and surface texture analysis of minerals from the Botucatú paleoerg and was instrumental to unravel past environmental and sedimentary conditions.

  12. Magmatism during Gondwana breakup

    DEFF Research Database (Denmark)

    van der Meer, Quinten; Scott, J.M.; Waight, Tod Earle;

    2013-01-01

    Newly determined mid-late Cretaceous 40Ar/39Ar ages on megacrystic kaersutite from lamprophyre dikes in central and north Westland (New Zealand) are presented. These ages (88 Ma, 86 Ma and 68 Ma) indicate that the intrusion of mafic dikes was not necessarily restricted to the previously establish...... did not only precede Tasman Sea initiation (starting at ~83 Ma, lasting to ~53 Ma) but may have sporadically continued for up to 15 Myr after continental breakup....

  13. Thermotolerant Yeast Strains Adapted by Laboratory Evolution Show Trade-Off at Ancestral Temperatures and Preadaptation to Other Stresses

    DEFF Research Database (Denmark)

    Caspeta, Luis; Nielsen, Jens

    2015-01-01

    adaptive laboratory evolution, we previously isolated seven Saccharomyces cerevisiae strains with improved growth at 40°C. Here, we show that genetic adaptations to high temperature caused a growth trade-off at ancestral temperatures, reduced cellular functions, and improved tolerance of other stresses...... in the ancestral strain. The latter is an advantageous attribute for acquiring thermotolerance and correlates with the reduction of yeast functions associated with loss of respiration capacity. This trait caused glycerol overproduction that was associated with the growth trade-off at ancestral temperatures....... In combination with altered sterol composition of cellular membranes, glycerol overproduction was also associated with yeast osmotolerance and improved tolerance of high concentrations of glucose and ethanol. Our study shows that thermal adaptation of yeast is suitable for improving yeast resistance...

  14. Ancestral state reconstruction of body size in the Caniformia (Carnivora, Mammalia): the effects of incorporating data from the fossil record.

    Science.gov (United States)

    Finarelli, John A; Flynn, John J

    2006-04-01

    A recent molecular phylogeny of the mammalian order Carnivora implied large body size as the ancestral condition for the caniform subclade Arctoidea using the distribution of species mean body sizes among living taxa. "Extant taxa-only" approaches such as these discount character state observations for fossil members of living clades and completely ignore data from extinct lineages. To more rigorously reconstruct body sizes of ancestral forms within the Caniformia, body size and first appearance data were collected for 149 extant and 367 extinct taxa. Body sizes were reconstructed for four ancestral nodes using weighted squared-change parsimony on log-transformed body mass data. Reconstructions based on extant taxa alone favored large body sizes (on the order of 10 to 50 kg) for the last common ancestors of both the Caniformia and Arctoidea. In contrast, reconstructions incorporating fossil data support small body sizes (fossil data was discarded, body size reconstructions became ambiguous, demonstrating that incorporating both character state and temporal information from fossil taxa unambiguously supports a small ancestral body size, thereby falsifying hypotheses derived from extant taxa alone. Body size reconstructions for Caniformia, Arctoidea, and Musteloidea were not sensitive to potential errors introduced by uncertainty in the position of extinct lineages relative to the molecular topology, or to missing body size data for extinct members of an entire major clade (the aquatic Pinnipedia). Incorporating character state observations and temporal information from the fossil record into hypothesis testing has a significant impact on the ability to reconstruct ancestral characters and constrains the range of potential hypotheses of character evolution. Fossil data here provide the evidence to reliably document trends of both increasing and decreasing body size in several caniform clades. More generally, including fossils in such analyses incorporates evidence of

  15. Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.

    Science.gov (United States)

    Groussin, Mathieu; Hobbs, Joanne K; Szöllősi, Gergely J; Gribaldo, Simonetta; Arcus, Vickery L; Gouy, Manolo

    2015-01-01

    The resurrection of ancestral proteins provides direct insight into how natural selection has shaped proteins found in nature. By tracing substitutions along a gene phylogeny, ancestral proteins can be reconstructed in silico and subsequently synthesized in vitro. This elegant strategy reveals the complex mechanisms responsible for the evolution of protein functions and structures. However, to date, all protein resurrection studies have used simplistic approaches for ancestral sequence reconstruction (ASR), including the assumption that a single sequence alignment alone is sufficient to accurately reconstruct the history of the gene family. The impact of such shortcuts on conclusions about ancestral functions has not been investigated. Here, we show with simulations that utilizing information on species history using a model that accounts for the duplication, horizontal transfer, and loss (DTL) of genes statistically increases ASR accuracy. This underscores the importance of the tree topology in the inference of putative ancestors. We validate our in silico predictions using in vitro resurrection of the LeuB enzyme for the ancestor of the Firmicutes, a major and ancient bacterial phylum. With this particular protein, our experimental results demonstrate that information on the species phylogeny results in a biochemically more realistic and kinetically more stable ancestral protein. Additional resurrection experiments with different proteins are necessary to statistically quantify the impact of using species tree-aware gene trees on ancestral protein phenotypes. Nonetheless, our results suggest the need for incorporating both sequence and DTL information in future studies of protein resurrections to accurately define the genotype-phenotype space in which proteins diversify.

  16. ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun.

    Directory of Open Access Journals (Sweden)

    Ruiqiang Li

    2005-09-01

    Full Text Available We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist at high copy numbers across the genome and must not be so old that they are no longer recognizable in comparison to their ancestral sequences. Tested on the japonica rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences.

  17. The imperfect ancestral recombination graph reconstruction problem: upper bounds for recombination and homoplasy.

    Science.gov (United States)

    Lam, Fumei; Tarpine, Ryan; Istrail, Sorin

    2010-06-01

    One of the central problems in computational biology is the reconstruction of evolutionary histories. While models incorporating recombination and homoplasy have been studied separately, a missing component in the theory is a robust and flexible unifying model which incorporates both of these major biological events shaping genetic diversity. In this article, we introduce the first such unifying model and develop algorithms to find the optimal ancestral recombination graph incorporating recombinations and homoplasy events. The power of our framework is the connection between our formulation and the Directed Steiner Arborescence Problem in combinatorial optimization. We implement linear programming techniques as well as heuristics for the Directed Steiner Arborescence Problem, and use our methods to construct evolutionary histories for both simulated and real data sets. PMID:20583925

  18. Novel ancestral Dysferlin splicing mutation which migrated from the Iberian peninsula to South America.

    Science.gov (United States)

    Vernengo, Luis; Oliveira, Jorge; Krahn, Martin; Vieira, Emilia; Santos, Rosário; Carrasco, Luisa; Negrão, Luís; Panuncio, Ana; Leturcq, France; Labelle, Veronique; Bronze-da-Rocha, Elsa; Mesa, Rosario; Pizzarossa, Carlos; Lévy, Nicolas; Rodriguez, Maria-Mirta

    2011-05-01

    Primary dysferlinopathies are a group of recessive heterogeneous muscular dystrophies. The most common clinical presentations are Miyoshi myopathy and LGMD2B. Additional presentations range from isolated hyperCKemia to severe functional disability. Symptomatology begins in the posterior muscle compartment of the calf and its clinical course progresses slowly in Miyoshi myopathy whereas LGMD2B involves predominantly the proximal muscles of the lower limbs. The age of onset ranges from 13 to 60years in Caucasians. We present five patients that carry a novel mutation in the exon12/intron12 boundary: c.1180_1180+7delAGTGCGTG (r.1054_1284del). We provide evidence of a founder effect due to a common ancestral origin of this mutation, detected in heterozygosity in four patients and in homozygosity in one patient.

  19. Researching Pacific island livelihoods:

    DEFF Research Database (Denmark)

    Egelund Christensen, Andreas; Mertz, Ole

    2010-01-01

    on contemporary theories of nissology and conceptual analytical frameworks for island research. Through a review of selected case-study-based island literature on changing livelihoods coming out of the South Pacific, we wish to illustrate and discuss advantages of finding common grounds for small island studies......Small island literature is vast in focus and aim, and is rooted in many different disciplines. The challenge is to find common grounds for researching small islands conceptually and theoretically. The aim of this article is to comment on how to research small islands, including a discussion....... The focus is on two dimensions of island livelihood, migration and natural resource management, both of which are significant contributors in making island livelihoods and shaping Pacific seascapes. We argue that there is still a substantial lack of studies targeting small island dynamics that are empirical...

  20. Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations

    Directory of Open Access Journals (Sweden)

    Omberg Larsson

    2012-06-01

    Full Text Available Abstract Background Populations of the Arabian Peninsula have a complex genetic structure that reflects waves of migrations including the earliest human migrations from Africa and eastern Asia, migrations along ancient civilization trading routes and colonization history of recent centuries. Results Here, we present a study of genome-wide admixture in this region, using 156 genotyped individuals from Qatar, a country located at the crossroads of these migration patterns. Since haplotypes of these individuals could have originated from many different populations across the world, we have developed a machine learning method "SupportMix" to infer loci-specific genomic ancestry when simultaneously analyzing many possible ancestral populations. Simulations show that SupportMix is not only more accurate than other popular admixture discovery tools but is the first admixture inference method that can efficiently scale for simultaneous analysis of 50-100 putative ancestral populations while being independent of prior demographic information. Conclusions By simultaneously using the 55 world populations from the Human Genome Diversity Panel, SupportMix was able to extract the fine-scale ancestry of the Qatar population, providing many new observations concerning the ancestry of the region. For example, as well as recapitulating the three major sub-populations in Qatar, composed of mainly Arabic, Persian, and African ancestry, SupportMix additionally identifies the specific ancestry of the Persian group to populations sampled in Greater Persia rather than from China and the ancestry of the African group to sub-Saharan origin and not Southern African Bantu origin as previously thought.

  1. Magnetic Investigation of Ancestral Puebloan Rio Grande (New Mexico) Glaze Wares

    Science.gov (United States)

    Dyer, J. B.; Geissman, J. W.; Ramenofsky, A. F.

    2007-12-01

    In geologically heterogeneous regions, such as the Rio Grande, archaeologists typically rely on petrographic analyses to determine ceramic provenance and reconstruct prehistoric trade patterns. Even in these regions, other methods are useful for elucidating trade patterns and/or resolving ambiguities from the petrographic data. Magnetic properties of Ancestral central Rio Grande Puebloan ceramics are being acquired to assess their use in identifying provenance, trade patterns, composition, manufacturing techniques, and firing conditions of ceramics, before and during the early European contact period (ca. A.D. 1325-1700) in New Mexico. Similar to the study of Moskowitz et al. (1987), we use a combination of bulk susceptibility, NRM, ARM, and SIRM intensity, AF response by NRM, ARM, and SIRM, thermal demagnetization of NRM and SIRM, and coercivity of remanence, to study temporal change in Rio Grande glaze wares from four archaeological sites in the northern Rio Grande (approximately 90 sherds per site). Rio Grande glaze wares were widely traded among Ancestral Puebloan groups before and during the European contact period. The ceramics are from the two earliest Spanish administrative centers in New Mexico, San Gabriel del Yungue and Palace of the Governors, and two mission pueblos, Pecos Pueblo and San Marcos Pueblo. Magnetic property data are being compared with petrographic observations to test the effectiveness of several magnetic measurements to identify, among other things, ceramic provenance. A tentative observation in our study is that bulk susceptibility values correlate with different ceramic provenances. The mean bulk susceptibility values for Galisteo Basin ceramics, tempered with augite monzonite and hornblende latite, are significantly higher (5.56E-04 and 4.91E-04 SI mass, respectively) than those for Pajarito Plateau ceramics, tempered with glassy tuff, tuff rocks, and andesite, (1.79E-04, 2.53E-04, and 2.58E-04 SI mass, respectively). This study is

  2. Wiring a periscope--ocelli, retinula axons, visual neuropils and the ancestrality of sea spiders.

    Directory of Open Access Journals (Sweden)

    Tobias Lehmann

    Full Text Available The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a 'periscope' or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon "pseudoinverted" retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora and Limulus polyphemus (Xiphosura. This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have 'looked' like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes.

  3. Genes Suggest Ancestral Colour Polymorphisms Are Shared across Morphologically Cryptic Species in Arctic Bumblebees.

    Directory of Open Access Journals (Sweden)

    Paul H Williams

    Full Text Available Our grasp of biodiversity is fine-tuned through the process of revisionary taxonomy. If species do exist in nature and can be discovered with available techniques, then we expect these revisions to converge on broadly shared interpretations of species. But for the primarily arctic bumblebees of the subgenus Alpinobombus of the genus Bombus, revisions by some of the most experienced specialists are unusual for bumblebees in that they have all reached different conclusions on the number of species present. Recent revisions based on skeletal morphology have concluded that there are from four to six species, while variation in colour pattern of the hair raised questions as to whether at least seven species might be present. Even more species are supported if we accept the recent move away from viewing species as morphotypes to viewing them instead as evolutionarily independent lineages (EILs using data from genes. EILs are recognised here in practice from the gene coalescents that provide direct evidence for their evolutionary independence. We show from fitting both general mixed Yule/coalescent (GMYC models and Poisson-tree-process (PTP models to data for the mitochondrial COI gene that there is support for nine species in the subgenus Alpinobombus. Examination of the more slowly evolving nuclear PEPCK gene shows further support for a previously unrecognised taxon as a new species in northwestern North America. The three pairs of the most morphologically similar sister species are separated allopatrically and prevented from interbreeding by oceans. We also find that most of the species show multiple shared colour patterns, giving the appearance of mimicry among parts of the different species. However, reconstructing ancestral colour-pattern states shows that speciation is likely to have cut across widespread ancestral polymorphisms, without or largely without convergence. In the particular case of Alpinobombus, morphological, colour-pattern, and

  4. A Study on Ground Water Resource Management in Gondwana Formations in Western Part of West Godavari District Andhra Pradesh India

    Science.gov (United States)

    Singara, S.

    2006-05-01

    Groundwater source forms nearly fifty percent of the total irrigation in the country. With green revolution, there has been an increasing demand for water for agricultural and this led to overexploitation of groundwater resources in many parts of the state and the study area is not an exception. With the success of groundwater exploration and development through deep tube wells in the study area, the farmers plunged into hectic activity of tapping groundwater. The present study was taken up to assess to groundwater recharge and draft in the area and to suggest remedial measures to redress overexploitation condition. The study area is underlain by a vide range of geological formations from Archean to Tertiary age. Crystallines consist of two-tier setting of aquifers with weathered and fracture zones. The Gondwana formations with Sandstone, shale and clay zones form unconfined to confined aquifer system. Deccan trap basalt occurs subsurface in some parts. Crystalline aquifers are exploited through borewells with a depth range of 29 to 101.5 m. Static water levels range in depth from 2.5 and 19.27 m bgl. Their yields range from 2.53 to 19.27 m3/hr. Sedimentary aquifers are exploited through tube wells with a depth range of 18 to 293 m and static water levels range from 2.1m agl to 48.0 m bgl. Yields of the wells vary form 1.3 to 67 m3 /hr. Groundwater is lifted by monoblock pumpsets of 5 HP in some places but mostly by submersible pumpsets with 5 to 12.5 HP. The tube wells are subjected to pumping from 5 to 18 hours per day depending on availability of electricity (power supply). They are operated form 90 days to throughout the year in different places. Groundwater development in the study area shows a steady increase since 1960 with number of tube wells uniformly increasing in each decade, from an initial figure of 592 wells in 1960 to 17,173 tube wells in 2002. Crop pattern was shifted from dry crops to paddy and sugar cane as major crops and irrigated dry crops

  5. Final assembly of Gondwana along its northern margin: Revising the suture geometry based on evidence from the Iranian-Turkish Plateau

    Science.gov (United States)

    Jamali Ashtiani, Rezvaneh; Hassanzadeh, Jamshid; Schmitt, Axel K.; Rahgoshay, Mohammad; Sobel, Edward

    2016-04-01

    The existing reconstructions of Gondwana suffer from uncertainties about its northern extensions due to the episodic separation of rifted blocks and their accretion to the Alpine-Himalayan orogenic belt during the Phanerozoic times. Using new data and the published information we synthesize an Ediacaran (630-542 Ma) thickened continental belt whose fragments are now dispersed in a 2300-km-long NW-SE trending zone within the Iranian-Turkish Plateau. The belt is characterized by Barrovian and high-P metamorphic associations which include metasediments, orthogenisses and metabasites with amphibolite to eclogite grade rocks. Three metamorphic complexes in the Sanandaj-Sirjan zone of Iran (Zayanderud, Dorud-Azna, and Khoy) and one complex in Turkey (the Menderes Massif) are correlated based on similar rock compositions and U-Pb zircon ages. Metabasites are shown to be largely derived from tholeiitic magmas displaying continental basalt affinity. Orthogneisses are calcalkaline and reveal arc-like trace element geochemistry. Magmatic crystallization ages throughout the belt lie entirely in the Ediacaran Period range: 560-586 Ma (Zayanderud), 588-608 Ma (Dorud-Azna), 550-595 Ma (Khoy), and 552-570 Ma (Menderes). Recognition of this orogenic belt within the Arabia-Eurasia collision zone begs the question of which way the Menderes eclogitic terrain was connected to the known Pan-African orogenic belts, e.g., the East African orogen. There are various paleogeographic suggestions for this part of Gondwana at the end of the Precambrian time which can be tested using our compiled dataset. A recent scheme assumes that the connection of the Menderes eclogitic terrain and the East African orogen was through the Arabian Peninsula. The thick Phanerozoic cover precludes any easy testing of the crystalline basement of the Arabian plate for the presence of similar rock associations. Our data favors the alternative connecting path via a roughly E-W-trending orogen (in present

  6. Three stages in the Late Paleozoic to Triassic magmatism of southwestern Gondwana, and the relationships with the volcanogenic events in coeval basins

    Science.gov (United States)

    Sato, Ana María; Llambías, Eduardo J.; Basei, Miguel A. S.; Castro, Carlos E.

    2015-11-01

    The intermediate to acid Choiyoi Magmatic Province is the most conspicuous feature along the Late Paleozic continental margin of southwestern Gondwana, and is generally regarded as the possible source for the widespread ash fall deposits interlayered with sedimentary sequences in the adjacent Gondwana basins. The Choiyoi magmatism is geologically constrained between the early Permian San Rafael orogenic phase and the Triassic extensional Huarpica phase in the region of Argentine Frontal Cordillera, Precordillera and San Rafael Block. In order to better assess the Choiyoi magmatism in Argentine Frontal Cordillera, we obtained 6 new LA-ICPMS U-Pb ages between 278.8 ± 3.4 Ma and 252.5 ± 1.9 Ma from plutonic rocks of the Colangüil Batholith and an associated volcanic rock. The global analysis of age data compiled from Chilean and Argentine Late Paleozoic to Triassic outcrops allows us to identify three stages of magmatism: (1) pre-Choiyoi orogenic magmatism, (2) Choiyoi magmatism (286-247 Ma), and (3) post-Choiyoi magmatism related to extensional tectonics. In the Choiyoi stage is there an eastward shift and expansion of the magmatism to the southeast, covering an extensive region that defines the Choiyoi magmatic province. On the basis of comparison with the ages from volcanogenic levels identified in the coeval Gondwana basins, we propose: (a) The pre-Choiyoi volcanism from the Paganzo basin (320-296 Ma) probably has a local source in addition to the Frontal Cordillera region. (b) The pre-Choiyoi and Choiyoi events identified in the Paraná basin (304-275 Ma) are likely to have their source in the Chilean Precordillera. (c) The early stage of the Choiyoi magmatism found in the Sauce Grande basin (284-281 Ma) may have come from the adjacent Las Matras to Chadileuvú blocks. (d) The pre-Choiyoi and Choiyoi events in the Karoo basins (302-253 Ma) include the longest Choiyoi interval, and as a whole bear the best resemblance to the age records along the Chilean and

  7. ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

    DEFF Research Database (Denmark)

    Li, Ruiqiang; Ye, Jia; Li, Songgang;

    2005-01-01

    in comparison to their ancestral sequences. Tested on the japonica rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences. Udgivelsesdato: 2005-Sep...

  8. Diachronism in the late Neoproterozoic-Cambrian arc-rift transition of North Gondwana: A comparison of Morocco and the Iberian Ossa-Morena Zone

    Science.gov (United States)

    Álvaro, J. Javier; Bellido, Félix; Gasquet, Dominique; Pereira, M. Francisco; Quesada, Cecilio; Sánchez-García, Teresa

    2014-10-01

    In the northwestern border of the West African craton (North Gondwana), a transition from late Neoproterozoic subduction/collision to Cambrian rift processes was recorded in the Anti-Atlas (Morocco) and in the Ossa-Morena Zone (Iberia). Cambrian rifting affected both Pan-African and Cadomian basements in a stepwise and diachronous way. Subsequently, both areas evolved into a syn-rift margin episodically punctuated by uplift and tilting that precluded Furongian sedimentation. A comparison of sedimentary, volcanic and geodynamic evolution is made in the late Neoproterozoic (Pan-African and Cadomian) belts and Cambrian rifts trying to solve the apparent diachronous (SW-NE-trending) propagation of an early Palaeozoic rifting regime that finally led to the opening of the Rheic Ocean.

  9. Significance of transition between Talchir Formation and Karharbari Formation in Lower Gondwana basin evolution — A study in West Bokaro Coal basin, Jharkhand, India

    Indian Academy of Sciences (India)

    H N Bhattacharya; Abhijit Chakraborty; Biplab Bhattacharya

    2005-06-01

    Basal part of the Gondwana Supergroup represented by Talchir and Karharbari Formations (Permo-Carboniferous) records an abrupt change-over from glacio-marine to terrestrial fluviolacustrine depositional environment. The contact between the two is an unconformity. Facies analysis of the glacio-marine Talchir Formation reveals that basal glaciogenic and reworked glaciogenic sediments are buried under storm influenced inner and outer shelf sediments. Facies associations of the Karharbari Formation suggest deposition as fluvio-lacustrine deposits in fault-controlled troughs. An attempt has been made in this paper to explain the sedimentation pattern in Talchir and Karharbari basins, and the abrupt change-over from glacio-marine to terrestrial fluviolacustrine depositional environment in terms of glacio-isostacy.

  10. 周代宗庙礼制考%The Research on the Etiquettes of Zhou Dynasty’s Ancestral Temple

    Institute of Scientific and Technical Information of China (English)

    王启敏

    2015-01-01

    周代社会中与宗庙相关的礼制多种多样。宗庙始成要举行落成典礼,作歌诗以纪之。祭庙的形式可谓五花八门,而且祭者的态度要十分的恭敬、严谨。诸侯有丧事了,要在宗庙吊唁,规矩也很多。此外,如天子即位,天子(或诸侯)娶妻、嫁女、出国、归国、出征、凯旋等都要在宗庙举行郑重的祭告仪式。在宗庙的守护、装饰、迁移等方面,在当时也有着严格的、不同的礼节制度要遵守。%In Zhou dynasty the related ancestral temple customs are various. After the completion of ancestral temple, it should be inaugurated and poems should be made to memorize. The forms of memorial temples are varied. The attitude of the emperor and monarch muse be very respectful. The same was the monarch’s condolences at the ancestral temple. In addition, the ascending to the throne as emperor, or monarch, getting married or married abroad, returning to the homeland and triumphing must be held in the ancestral temple solemnly and be reported to ancestral temple. The temple’s guardian, decoration, migration and the others also have restricted rules to obey.

  11. Cambrian rift-related magmatism in the Ossa-Morena Zone (Iberian Massif): Geochemical and geophysical evidence of Gondwana break-up

    Science.gov (United States)

    Sarrionandia, F.; Carracedo Sánchez, M.; Eguiluz, L.; Ábalos, B.; Rodríguez, J.; Pin, C.; Gil Ibarguchi, J. I.

    2012-10-01

    Volcanic rocks of Cambrian age from Zafra (Ossa-Morena Zone, Iberian Massif) are the result of rift processes that affected Cadomian arc units accreted to the NW edge of Gondwana during the Neoproterozoic-Early Cambrian transition. Tephrite to rhyolite volcanics define an alkaline transitional association (Coombs type). Basic-ultrabasic rocks exhibit typical alkaline REE-patterns, strongly enriched in LREE with respect to HREE. Two parental magmas are identified, one with a mantle signature, lack of Nb negative anomaly and εNd500Ma + 3.8 to + 4.2; another with crustal contribution, minor Nb negative anomaly and εNd500Ma + 0.8 to + 1.8. Intermediate-acid rocks show variable REE fractionation and share geochemical characteristics of both basic-ultrabasic groups with restricted εNd500Ma + 2.2 to 3.1 and general absence of Nb negative anomaly. Basic-ultrabasic melts resulted from different amounts of partial melting of a homogeneous source and segregation at the garnet-spinel transition zone. We argue that the "Hales transition" recently recognized in reflection seismic experiments of SW Iberia might image such a source region. Mantle-derived magmas ponded at the base of the crust and weakly interacted with crustal rocks/melts, whilst intermediate-acid rocks were generated by plagioclase ± clinopyroxene ± amphibole fractionation. Melt ascent took place through fractures, with limited crustal interaction. Based upon the new geochemical results and complementary cartographic and geophysical data, a model is presented for the Cambrian break-up of North Gondwana due to magma ascent from the mantle.

  12. Early Cambrian granitoids of North Gondwana margin in the transition from a convergent setting to intra-continental rifting (Ossa-Morena Zone, SW Iberia)

    Science.gov (United States)

    Sánchez-García, T.; Pereira, M. F.; Bellido, F.; Chichorro, M.; Silva, J. B.; Valverde-Vaquero, P.; Pin, Ch.; Solá, A. R.

    2014-07-01

    Two distinct Cambrian magmatic pulses are recognized in the Ossa-Morena Zone (SW Iberia): an early rift-(ER) and a main rift-related event. This Cambrian magmatism is related to intra-continental rifting of North Gondwana that is thought to have culminated in the opening of the Rheic Ocean in Lower Ordovician times. New data of whole-rock geochemistry (19 samples), Sm-Nd-Sr isotopes (4 samples) and ID-TIMS U-Pb zircon geochronology (1 sample) of the Early Cambrian ER plutonic rocks of the Ossa-Morena Zone are presented in this contribution. The ER granitoids (Barreiros, Barquete, Calera, Salvatierra de los Barros and Tablada granitoid Massifs) are mostly peraluminous granites. The Sm-Nd isotopic data show moderate negative ɛNdt values ranging from -3.5 to +0.1 and TDM ages greatly in excess of emplacement ages. Most ER granitoids are crustal melts. However, a subset of samples shows a transitional anorogenic alkaline tendency, together with more primitive isotopic signatures, documenting the participation of lower crust or mantle-derived sources and suggesting a local transient advanced stage of rifting. The Barreiros granitoid is intrusive into the Ediacaran basement of the Ossa-Morena Zone (Série Negra succession) and has yielded a crystallization age of 524.7 ± 0.8 Ma consistent with other ages of ER magmatic pulse. This age: (1) constrains the age of the metamorphism developed in the Ediacaran back-arc basins before the intrusion of granites and (2) defines the time of the transition from the Ediacaran convergent setting to the Lower Cambrian intra-continental rifting in North Gondwana.

  13. Paleomagnetic data support Early Permian age for the Abor Volcanics in the lower Siang Valley, NE India: Significance for Gondwana-related break-up models

    Science.gov (United States)

    Ali, Jason R.; Aitchison, Jonathan C.; Chik, Sam Y. S.; Baxter, Alan T.; Bryan, Scott E.

    2012-05-01

    Confusion exists as to the age of the Abor Volcanics of NE India. Some consider the unit to have been emplaced in the Early Permian, others the Early Eocene, a difference of ˜230 million years. The divergence in opinion is significant because fundamentally different models explaining the geotectonic evolution of India depend on the age designation of the unit. Paleomagnetic data reported here from several exposures in the type locality of the formation in the lower Siang Valley indicate that steep dipping primary magnetizations (mean = 72.7 ± 6.2°, equating to a paleo-latitude of 58.1°) are recorded in the formation. These are only consistent with the unit being of Permian age, possibly Artinskian based on a magnetostratigraphic argument. Plate tectonic models for this time consistently show the NE corner of the sub-continent >50°S; in the Early Eocene it was just north of the equator, which would have resulted in the unit recording shallow directions. The mean declination is counter-clockwise rotated by ˜94°, around half of which can be related to the motion of the Indian block; the remainder is likely due local Himalayan-age thrusting in the Eastern Syntaxis. Several workers have correlated the Abor Volcanics with broadly coeval mafic volcanic suites in Oman, NE Pakistan-NW India and southern Tibet-Nepal, which developed in response to the Cimmerian block peeling-off eastern Gondwana in the Early-Middle Permian, but we believe there are problems with this model. Instead, we suggest that the Abor basalts relate to India-Antarctica/India-Australia extension that was happening at about the same time. Such an explanation best accommodates the relevant stratigraphical and structural data (present-day position within the Himalayan thrust stack), as well as the plate tectonic model for Permian eastern Gondwana.

  14. A study of the distribution of ice sheets on Gondwana Supercontinent in Paleozoic%冈瓦纳大陆古生代冰盖分布研究

    Institute of Scientific and Technical Information of China (English)

    王洪浩; 李江海; 李维波; 周肖贝; 马丽亚; 刘仲兰

    2014-01-01

    In this study, the authors reconstructed the distribution of ice sheets on Gondwana Supercontinent in Paleozoic based on the methods of stratigraphic correlation and paleomagnetism. By studying the Paleozoic glacier deposits on the major plates of Gondwana, the authors have reached the conclusion that three major glacial events occurred on Gondwana Supercontinent in Paleozoic, which included (1) Late Ordovician-Early Silurian glacial event, (2) Late Devonian-Early Carboniferous glacial event, (3) the end of Late Carboniferous-Permian glacial event. The Late Ordovician-Early Silurian glacier event lasted a shorter period of time, and the glacier deposits were limitedly distributed on West Gondwana. Compared with the first glacier period, the ice sheets during the Late Devonian-Early Carboniferous glacier period were even smaller and mainly distributed in South America Plate, whereas the last glacial event lasted for the longest time and influenced the largest area, and the ice sheets were distributed on all the major plates which constituted Gondwana Supercontinent. Furthermore, the centers of ice sheets in the three glacial events were all close to the South Pole, but they were not completely coincident. It is thus held that the major factor affecting the distribution of ice sheets on Gondwana Supercontinent was the temperature. In addition, basin dynamics, topography, attributes of glacier and other specific factors could also affect the distribution of ice sheets. Combining the authors’field work in Baoshan Block with achievements of other researchers, the authors have reached the conclusion that only the Late Carboniferous-Permian glacial event had an effect on China’s blocks, and mainly affected the blocks in Southwest China, including Baoshan Block, Tengchong Block, Lhasa Block and Qiangtang Block.%提基于冈瓦纳大陆主要板块冰川沉积地层的对比,并结合古地磁方法对冈瓦纳大陆古生代主要冰期的冰盖分布范围进行再

  15. Obesity and Native Hawaiians/Pacific Islanders

    Science.gov (United States)

    ... Population Profiles > Native Hawaiian/Other Pacific Islander > Obesity Obesity and Native Hawaiians/Pacific Islanders Native Hawaiians/Pacific ... youthonline . [Accessed 05/25/2016] HEALTH IMPACT OF OBESITY More than 80 percent of people with type ...

  16. Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states

    Directory of Open Access Journals (Sweden)

    Grünewald Stefan

    2011-01-01

    Full Text Available Abstract Background As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all branches of a tree to explain the evolution of a character. Due to the extensive usage of this method, it has become a scientific endeavor in recent years to study the reconstruction accuracies of the Fitch method. However, most studies are restricted to 2-state evolutionary models and a study for higher-state models is needed since DNA sequences take the format of 4-state series and protein sequences even have 20 states. Results In this paper, the ambiguous and unambiguous reconstruction accuracy of the Fitch method are studied for N-state evolutionary models. Given an arbitrary phylogenetic tree, a recurrence system is first presented to calculate iteratively the two accuracies. As complete binary tree and comb-shaped tree are the two extremal evolutionary tree topologies according to balance, we focus on the reconstruction accuracies on these two topologies and analyze their asymptotic properties. Then, 1000 Yule trees with 1024 leaves are generated and analyzed to simulate real evolutionary scenarios. It is known that more taxa not necessarily increase the reconstruction accuracies under 2-state models. The result under N-state models is also tested. Conclusions In a large tree with many leaves, the reconstruction accuracies of using all taxa are sometimes less than those of using a leaf subset under N-state models. For complete binary trees, there always exists an equilibrium interval [a, b] of conservation probability, in which the limiting ambiguous reconstruction accuracy equals to the probability of randomly picking a state. The value b decreases with the increase of the number of states, and it seems to converge. When the conservation probability is greater than b, the reconstruction accuracies of the Fitch method increase rapidly. The reconstruction

  17. Pacific Northwest: paradise lost

    Energy Technology Data Exchange (ETDEWEB)

    Thomas, W.V.

    1980-04-18

    An influx of new residents to the Pacific Northwest is changing social patterns and is endangering the region's valued wilderness and resources. A growing population and a feeling that the national govenment is more exploitive than conserving of its resources combines with a political tension between progressive populism and conservative Mormon influences to make residents wary of either newcomers or new prosperity. The abundant hydro power is threatened as power demand increases and utilities, industries, and the state and local governments compete for their fair share. A plan to restructure the Bonneville Power Administration (BPA) has been introduced in Congress to give it a single appointed administrator with the authority to decide how power will be distributed and which new power sources to develop. Concern about the two national nuclear waste repositories at Hanford and Idaho Falls led to a six-month moratorium at Hanford to warn the government that the site was not intended to be a permanent solution. A legislative proposal to set up regional nuclear parks will not relieve the Pacific Northwest's problems for some time. Leaders blame the policymakers for looking on the area as too remote and underpopulated to worry about. 18 references (DCK)

  18. The North Pacific Gyre Mode

    Science.gov (United States)

    Schneider, N.; di Lorenzo, E.

    2007-12-01

    Discussion of North Pacific Decadal decadal variability has focused primarily on the Pacific Decadal Oscillation, the leading mode of sea surface temperature anomalies north of the tropics. The PDO appears to result from a superposition of SST pattern forced by the North Pacific atmosphere due to its intrinsic dynamics and teleconnected from the tropics, with a regional impact of the ocean circulation in the frontal regions associated with the Kuroshio/Oyashio and their extensions into the interior. Recent modeling, however, suggest that previously unexplained decadal changes of salinity, nutrient upwelling and chlorophyl in the California Current are not dominated by the PDO. Rather, these are associated with a mode of variability associated with wind driven changes of the North Pacific Gyre. Consideration of this mode variability may thus be important to understand present and future variations of the North Pacific ecosystem, and in the interpretation of climate proxies.

  19. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral "Salicoid" Genome Duplication.

    Science.gov (United States)

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-01-01

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the "salicoid" duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants. PMID:27352946

  20. A PCA-based method for ancestral informative markers selection in structured populations

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Identification of population structure can help trace population histories and identify disease genes. Structured association (SA) is a commonly used approach for population structure identification and association mapping. A major issue with SA is that its performance greatly depends on the informa-tiveness and the numbers of ancestral informative markers (AIMs). Present major AIM selection meth-ods mostly require prior individual ancestry information, which is usually not available or uncertain in practice. To address this potential weakness, we herein develop a novel approach for AIM selection based on principle component analysis (PCA), which does not require prior ancestry information of study subjects. Our simulation and real genetic data analysis results suggest that, with equivalent AIMs, PCA-based selected AIMs can significantly increase the accuracy of inferred individual ancestries compared with traditionally randomly selected AIMs. Our method can easily be applied to whole genome data to select a set of highly informative AIMs in population structure, which can then be used to identify potential population structure and correct possible statistical biases caused by population stratification.

  1. The vomeronasal complex of nocturnal strepsirhines and implications for the ancestral condition in primates.

    Science.gov (United States)

    Garrett, Eva C; Dennis, John C; Bhatnagar, Kunwar P; Durham, Emily L; Burrows, Anne M; Bonar, Christopher J; Steckler, Natalie K; Morrison, Edward E; Smith, Timothy D

    2013-12-01

    This study investigates the vomeronasal organ in extant nocturnal strepsirhines as a model for ancestral primates. Cadaveric samples from 10 strepsirhine species, ranging from fetal to adult ages, were studied histologically. Dimensions of structures in the vomeronasal complex, such as the vomeronasal neuroepithelium (VNNE) and vomeronasal cartilage (VNC) were measured in serial sections and selected specimens were studied immunohistochemically to determine physiological aspects of the vomeronasal sensory neurons (VSNs). Osteological features corresponding to vomeronasal structures were studied histologically and related to 3-D CT reconstructions. The VNC consistently rests in a depression on the palatal portion of the maxilla, which we refer to as the vomeronasal groove (VNG). Most age comparisons indicate that in adults VNNE is about twice the length compared with perinatal animals. In VNNE volume, adults are 2- to 3-fold larger compared with perinatal specimens. Across ages, a strong linear relationship exists between VNNE dimensions and body length, mass, and midfacial length. Results indicate that the VNNE of nocturnal strepsirhines is neurogenic postnatally based on GAP43 expression. In addition, based on Olfactory Marker Protein expression, terminally differentiated VSNs are present in the VNNE. Therefore, nocturnal strepsirhines have basic similarities to rodents in growth and maturational characteristics of VSNs. These results indicate that a functional vomeronasal system is likely present in all nocturnal strepsirhines. Finally, given that osteological features such as the VNG are visible on midfacial bones, primate fossils can be assessed to determine whether primate ancestors possessed a vomeronasal complex morphologically similar to that of modern nocturnal strepsirhines. PMID:24249398

  2. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral “Salicoid” Genome Duplication

    Science.gov (United States)

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-01-01

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the “salicoid” duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants. PMID:27352946

  3. The tendency to recreate ancestral CG dinucleotides in the human genome

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    Li Mingkun

    2011-01-01

    Full Text Available Abstract Background The CG dinucleotides are known to be deficient in the human genome, due to a high mutation rate from 5-methylated CG to TG and its complementary pair CA. Meanwhile, many cellular functions rely on these CG dinucleotides, such as gene expression controlled by cytosine methylation status. Thus, CG dinucleotides that provide essential functional substrates should be retained in genomes. How these two conflicting processes regarding the fate of CG dinucleotides - i.e., high mutation rate destroying CG dinucleotides, vs. functional processes that require their preservation remains an unsolved question. Results By analyzing the mutation and frequency spectrum of newly derived alleles in the human genome, a tendency towards generating more CGs was observed, which was mainly contributed by an excess number of mutations from CA/TG to CG. Simultaneously, we found a fixation preference for CGs derived from TG/CA rather than CGs generated by other dinucleotides. These tendencies were observed both in intergenic and genic regions. An analysis of Integrated Extended Haplotype Homozygosity provided no evidence of selection for newly derived CGs. Conclusions Ancestral CG dinucleotides that were subsequently lost by mutation tend to be recreated in the human genome, as indicated by a biased mutation and fixation pattern favoring new CGs that derived from TG/CA.

  4. Detection of Weakly Conserved Ancestral Mammalian RegulatorySequences by Primate Comparisons

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Qian-fei; Prabhakar, Shyam; Chanan, Sumita; Cheng,Jan-Fang; Rubin, Edward M.; Boffelli, Dario

    2006-06-01

    Genomic comparisons between human and distant, non-primatemammals are commonly used to identify cis-regulatory elements based onconstrained sequence evolution. However, these methods fail to detectcryptic functional elements, which are too weakly conserved among mammalsto distinguish from nonfunctional DNA. To address this problem, weexplored the potential of deep intra-primate sequence comparisons. Wesequenced the orthologs of 558 kb of human genomic sequence, coveringmultiple loci involved in cholesterol homeostasis, in 6 nonhumanprimates. Our analysis identified 6 noncoding DNA elements displayingsignificant conservation among primates, but undetectable in more distantcomparisons. In vitro and in vivo tests revealed that at least three ofthese 6 elements have regulatory function. Notably, the mouse orthologsof these three functional human sequences had regulatory activity despitetheir lack of significant sequence conservation, indicating that they arecryptic ancestral cis-regulatory elements. These regulatory elementscould still be detected in a smaller set of three primate speciesincluding human, rhesus and marmoset. Since the human and rhesus genomesequences are already available, and the marmoset genome is activelybeing sequenced, the primate-specific conservation analysis describedhere can be applied in the near future on a whole-genome scale, tocomplement the annotation provided by more distant speciescomparisons.

  5. Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes.

    Directory of Open Access Journals (Sweden)

    Vincent J Lynch

    2009-01-01

    Full Text Available While the proposal that large-scale genome expansions occurred early in vertebrate evolution is widely accepted, the exact mechanisms of the expansion--such as a single or multiple rounds of whole genome duplication, bloc chromosome duplications, large-scale individual gene duplications, or some combination of these--is unclear. Gene families with a single invertebrate member but four vertebrate members, such as the Hox clusters, provided early support for Ohno's hypothesis that two rounds of genome duplication (the 2R-model occurred in the stem lineage of extant vertebrates. However, despite extensive study, the duplication history of the Hox clusters has remained unclear, calling into question its usefulness in resolving the role of large-scale gene or genome duplications in early vertebrates. Here, we present a phylogenetic analysis of the vertebrate Hox clusters and several linked genes (the Hox "paralogon" and show that different phylogenies are obtained for Dlx and Col genes than for Hox and ErbB genes. We show that these results are robust to errors in phylogenetic inference and suggest that these competing phylogenies can be resolved if two chromosomal crossover events occurred in the ancestral vertebrate. These results resolve conflicting data on the order of Hox gene duplications and the role of genome duplication in vertebrate evolution and suggest that a period of genome reorganization occurred after genome duplications in early vertebrates.

  6. The ancestral circadian clock of monarch butterflies: role in time-compensated sun compass orientation.

    Science.gov (United States)

    Reppert, S M

    2007-01-01

    The circadian clock has a vital role in monarch butterfly (Danaus plexippus) migration by providing the timing component of time-compensated sun compass orientation, which contributes to navigation to the overwintering grounds. The location of circadian clock cells in monarch brain has been identified in the dorsolateral protocerebrum (pars lateralis); these cells express PERIOD, TIMELESS, and a Drosophila-like cryptochrome designated CRY1. Monarch butterflies, like all other nondrosophilid insects examined so far, express a second cry gene (designated insect CRY2) that encodes a vertebrate-like CRY that is also expressed in pars lateralis. An ancestral circadian clock mechanism has been defined in monarchs, in which CRY1 functions as a blue light photoreceptor for photic entrainment, whereas CRY2 functionswithin the clockwork as themajor transcriptional repressor of an intracellular negative transcriptional feedback loop. A CRY1-staining neural pathway has been identified that may connect the circadian (navigational) clock to polarized light input important for sun compass navigation, and a CRY2-positive neural pathway has been discovered that may communicate circadian information directly from the circadian clock to the central complex, the likely site of the sun compass. The monarch butterfly may thus use the CRY proteins as components of the circadian mechanism and also as output molecules that connect the clock to various aspects of the sun compass apparatus. PMID:18419268

  7. WEB LOG PREPROCESSING BASED ON PARTIAL ANCESTRAL GRAPH TECHNIQUE FOR SESSION CONSTRUCTION

    Directory of Open Access Journals (Sweden)

    S.Chitra

    2012-10-01

    Full Text Available Web access log analysis is to analyze the patterns of web site usage and the features of users behavior. It is the fact that the normal Log data is very noisy and unclear and it is vital to preprocess the log data for efficient web usage mining process. Preprocessing comprises of three phases which includes data cleaning, user identification and session construction. Session construction is very vital and numerous real world problems can be modeled as traversals on graph and mining from these traversals would provide the requirement for preprocessing phase. On the other hand, the traversals on unweighted graph have been taken into consideration in existing works. This paper oversimplifies this to the case where vertices of graph are given weights to reflect their significance. The proposed method constructs sessions as a Partial Ancestral Graph which contains pages with calculated weights. This will help site administrators to find the interesting pages for users and to redesign their web pages. After weighting each page according to browsing time a PAG structure is constructed for each user session. Existing system in which there is a problem of learning with the latent variables of the data and the problem can be overcome by the proposed method.

  8. Evolutionary Psychology: How Psychological Mechanisms Shaped by Natural Selection for Ancestral Environments Produce Current Behaviours

    Institute of Scientific and Technical Information of China (English)

    Charles Crawford

    2009-01-01

    The central purpose of this paper is to explain how Darwin's theory of evolution by natural selection can be used in understanding current human behaviour. First, Darwin's logic is briefly described. Development is an important issue when applying evolutionary theory to human behaviour. The notion of innate developmental orga-nization of psychological mechanisms is introduced. The possible social and political outcomes produced when differ-ent levels of innate developmental organization are paired with different beliefs about it are considered. The notion of psychological mechanisms as evolved adaptations is considered in some detail. Then I discuss different ways evo-htionists think about how genes are involved in the development of adaptations. The paper concludes with a frame-work for considering how ancestral adaptations function in current environments and outlines some ways of studying them. In China and many other parts of the world people desire a more harmonious society. Ⅰ hope that this paper will be of some small help in achieving this great task.

  9. Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures.

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    Mohan Manikkam

    Full Text Available Environmental factors during fetal development can induce a permanent epigenetic change in the germ line (sperm that then transmits epigenetic transgenerational inheritance of adult-onset disease in the absence of any subsequent exposure. The epigenetic transgenerational actions of various environmental compounds and relevant mixtures were investigated with the use of a pesticide mixture (permethrin and insect repellant DEET, a plastic mixture (bisphenol A and phthalates, dioxin (TCDD and a hydrocarbon mixture (jet fuel, JP8. After transient exposure of F0 gestating female rats during the period of embryonic gonadal sex determination, the subsequent F1-F3 generations were obtained in the absence of any environmental exposure. The effects on the F1, F2 and F3 generations pubertal onset and gonadal function were assessed. The plastics, dioxin and jet fuel were found to promote early-onset female puberty transgenerationally (F3 generation. Spermatogenic cell apoptosis was affected transgenerationally. Ovarian primordial follicle pool size was significantly decreased with all treatments transgenerationally. Differential DNA methylation of the F3 generation sperm promoter epigenome was examined. Differential DNA methylation regions (DMR were identified in the sperm of all exposure lineage males and found to be consistent within a specific exposure lineage, but different between the exposures. Several genomic features of the DMR, such as low density CpG content, were identified. Exposure-specific epigenetic biomarkers were identified that may allow for the assessment of ancestral environmental exposures associated with adult onset disease.

  10. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European.

    Science.gov (United States)

    Olalde, Iñigo; Allentoft, Morten E; Sánchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W K; DeGiorgio, Michael; Prado-Martinez, Javier; Rodríguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramírez, Oscar; Marigorta, Urko M; Fernández-Callejo, Marcos; Prada, María Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G; Novembre, John; Sturm, Richard A; Sabeti, Pardis; Marquès-Bonet, Tomàs; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles

    2014-03-13

    Ancient genomic sequences have started to reveal the origin and the demographic impact of farmers from the Neolithic period spreading into Europe. The adoption of farming, stock breeding and sedentary societies during the Neolithic may have resulted in adaptive changes in genes associated with immunity and diet. However, the limited data available from earlier hunter-gatherers preclude an understanding of the selective processes associated with this crucial transition to agriculture in recent human evolution. Here we sequence an approximately 7,000-year-old Mesolithic skeleton discovered at the La Braña-Arintero site in León, Spain, to retrieve a complete pre-agricultural European human genome. Analysis of this genome in the context of other ancient samples suggests the existence of a common ancient genomic signature across western and central Eurasia from the Upper Paleolithic to the Mesolithic. The La Braña individual carries ancestral alleles in several skin pigmentation genes, suggesting that the light skin of modern Europeans was not yet ubiquitous in Mesolithic times. Moreover, we provide evidence that a significant number of derived, putatively adaptive variants associated with pathogen resistance in modern Europeans were already present in this hunter-gatherer. PMID:24463515

  11. A PCA-based method for ancestral informative markers selection in structured populations

    Institute of Scientific and Technical Information of China (English)

    ZHANG Feng; ZHANG Lei; DENG Hong-Wen

    2009-01-01

    Identification of population structure can help trace population histories and identify disease genes.Structured association (SA) is a commonly used approach for population structure identification and association mapping. A major issue with SA is that its performance greatly depends on the informativeness and the numbers of ancestral informative markers (AIMs). Present major AIM selection methods mostly require prior individual ancestry information, which is usually not available or uncertain in practice. To address this potential weakness, we herein develop a novel approach for AIM selection based on principle component analysis (PCA), which does not require prior ancestry information of study subjects. Our simulation and real genetic data analysis results suggest that, with equivalent AIMs,PCA-based selected AIMs can significantly increase the accuracy of inferred individual ancestries compared with traditionally randomly selected AIMs. Our method can easily be applied to whole genome data to select a set of highly informative AIMs in population structure, which can then be used to identify potential population structure and correct possible statistical biases caused by population stratification.

  12. 客家祠堂的文化内涵研究--以三明客家祠堂为例%Study on the Culture Connotation of Hakka Ancestral Hall---Taking Sanming Hakka Ancestral Hall as an Example

    Institute of Scientific and Technical Information of China (English)

    黄晓珍

    2014-01-01

    Hakka ancestral hall is the most important place of Hakka clan ancestors,and it is an emotion carrier of Hakka as well, which contains rich cultural connotation. Sanming,as an important part of Fujian,Guangdong and Jiangxi Hakka stronghold,has a large number of Hakka ancestral halls. The name、couplets and architectural pattern of Hakka ancestral hall reflect how deeply the con-cept of ancestor worship of Hakka is;The pedigree of a clan、temple monument and ancestral hall couplets reflect how difficult Hakka' s migration path is;Its ancestor's instruction and function reflect how strong Hakka's concept of farming-reading is;Its site selection and layout reflect how prosperous Feng Shui Culture in Hakka is. They are the windows through which we can know Hakka history and Hak-ka culture.%客家祠堂是客家宗族祭祖的首要重地,也是客家人的情感载体,蕴含着丰富的文化内涵。三明作为闽粤赣边客家大本营的重要地区,拥有大量的客家祠堂,其堂号、楹联、建筑格局反映了客家人崇祖观念之深;其族谱、祠碑、楹联反映了客家人移民道路之艰;其祖训、功能反映出客家人耕读思想之重;其选址、布局反映出客家人风水文化之盛。客家祠堂是研究与理解客家历史文化的重要窗口。

  13. The Crystal Structure of Aq_328 from the Hyperthermophilic Bacteria Aquifex aeolicus Shows an Ancestral Histone Fold

    OpenAIRE

    Qiu, Yang; Tereshko, Valentina; Kim, Youngchang; Zhang, Rongguang; Collart, Frank; Yousef, Mohammed; Kossiakoff, Anthony; Joachimiak, Andrzej

    2006-01-01

    The structure of Aq_328, an uncharacterized protein from hyperthermophilic bacteria Aquifex aeolicus, has been determined to 1.9 Å by using multi-wavelength anomalous diffraction (MAD) phasing. Although the amino acid sequence analysis shows that Aq_328 has no significant similarity to proteins with a known structure and function, the structure comparison by using the Dali server reveals that it: (1) assumes a histone-like fold, and (2) is similar to an ancestral nuclear histone protein (PDB ...

  14. Impacts of Plant-Based Foods in Ancestral Hominin Diets on the Metabolism and Function of Gut Microbiota In Vitro

    OpenAIRE

    Gary S Frost; Walton, Gemma E; Jonathan R Swann; Psichas, Arianna; Costabile, Adele; Johnson, Laura P.; Sponheimer, Matt; Glenn R Gibson; Barraclough, Timothy G.

    2014-01-01

    ABSTRACT Ancestral human populations had diets containing more indigestible plant material than present-day diets in industrialized countries. One hypothesis for the rise in prevalence of obesity is that physiological mechanisms for controlling appetite evolved to match a diet with plant fiber content higher than that of present-day diets. We investigated how diet affects gut microbiota and colon cells by comparing human microbial communities with those from a primate that has an extreme plan...

  15. Genetic evidence for the ancestral loss of short-wavelength-sensitive cone pigments in mysticete and odontocete cetaceans.

    OpenAIRE

    Levenson, D H; Dizon, A

    2003-01-01

    All mammals ancestrally possessed two types of cone pigments, an arrangement that persists in nearly all contemporary species. However, the absence of one of these cone types, the short-wavelength-sensitive (SWS) cone, has recently been established in several delphinoid cetacean species, indicating that the loss of this pigment type may be widespread among cetaceans. To evaluate the functional condition of SWS cones in cetaceans, partial SWS cone-opsin gene sequences were obtained from nuclea...

  16. Genotype-based ancestral background consistently predicts efficacy and side effects across treatments in CATIE and STAR*D.

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    Daniel E Adkins

    Full Text Available Only a subset of patients will typically respond to any given prescribed drug. The time it takes clinicians to declare a treatment ineffective leaves the patient in an impaired state and at unnecessary risk for adverse drug effects. Thus, diagnostic tests robustly predicting the most effective and safe medication for each patient prior to starting pharmacotherapy would have tremendous clinical value. In this article, we evaluated the use of genetic markers to estimate ancestry as a predictive component of such diagnostic tests. We first estimated each patient's unique mosaic of ancestral backgrounds using genome-wide SNP data collected in the Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE (n = 765 and the Sequenced Treatment Alternatives to Relieve Depression (STAR*D (n = 1892. Next, we performed multiple regression analyses to estimate the predictive power of these ancestral dimensions. For 136/89 treatment-outcome combinations tested in CATIE/STAR*D, results indicated 1.67/1.84 times higher median test statistics than expected under the null hypothesis assuming no predictive power (p<0.01, both samples. Thus, ancestry showed robust and pervasive correlations with drug efficacy and side effects in both CATIE and STAR*D. Comparison of the marginal predictive power of MDS ancestral dimensions and self-reported race indicated significant improvements to model fit with the inclusion of MDS dimensions, but mixed evidence for self-reported race. Knowledge of each patient's unique mosaic of ancestral backgrounds provides a potent immediate starting point for developing algorithms identifying the most effective and safe medication for a wide variety of drug-treatment response combinations. As relatively few new psychiatric drugs are currently under development, such personalized medicine offers a promising approach toward optimizing pharmacotherapy for psychiatric conditions.

  17. JGOFS moves to the Pacific

    Science.gov (United States)

    Livingston, Hugh D.

    A process study in the equatorial Pacific Ocean for 1991-1992 has been recommended as the next major field program of the U.S. Joint Global Ocean Flux Study. The study will be preceded by a planning workshop in spring 1990.The equatorial study was selected at the September meeting of the U.S. JGOFS Committee at the University of Hawaii. The committee reviewed progress made since the issuance of the U.S. Pacific Planning report (U.S. JGOFS Planning Report No. 9) and the recommendations from the Scientific Committee on Oceanic Research (SCOR) JGOFS Pacific Planning meeting, which was at the university two days earlier.

  18. Regionalization of the shark hindbrain: a survey of an ancestral organization

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    Isabel eRodríguez-Moldes

    2011-03-01

    Full Text Available Cartilaginous fishes (chondrichthyans represent an ancient radiation of vertebrates currently considered the sister group of the group of gnathostomes with a bony skeleton that gave rise to land vertebrates. This out-group position makes chondrichthyans essential in assessing the ancestral organization of the brain of jawed vertebrates. To gain knowledge about hindbrain evolution we have studied its development in a shark, the lesser spotted dogfish Scyliorhinus canicula by analyzing the expression of some developmental genes and the origin and distribution of specific neuronal populations, which may help to identify hindbrain subdivisions and boundaries and the topology of specific cell groups. We have characterized three developmental periods that will serve as a framework to compare the development of different neuronal systems and may represent a suitable tool for comparing the absolute chronology of development among vertebrates. The expression patterns of Pax6, Wnt8 and Hoxa2 genes in early embryos of S. canicula showed close correspondence to what has been described in other vertebrates and helped to identify the anterior rhombomeres. Also in these early embryos, the combination of Pax6 with protein markers of migrating neuroblasts (DCX and early differentiating neurons (general: HuC/D; neuron type specific: GAD, the GABA synthesizing enzyme revealed the organization of S. canicula hindbrain in both transverse segmental units corresponding to visible rhombomeres and longitudinal columns. Later in development, when the interrhombomeric boundaries fade away, accurate information about S. canicula hindbrain subdivisions was achieved by comparing the expression patterns of Pax6 and GAD, serotonin (serotoninergic neurons, tyrosine hydroxylase (catecholaminergic neurons, choline acetyltransferase (cholinergic neurons and calretinin (a calcium-binding protein. The patterns observed revealed many topological correspondences with other vertebrates

  19. Streptococcus thermophilus Biofilm Formation: A Remnant Trait of Ancestral Commensal Life?

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    Benoit Couvigny

    Full Text Available Microorganisms have a long history of use in food production and preservation. Their adaptation to food environments has profoundly modified their features, mainly through genomic flux. Streptococcus thermophilus, one of the most frequent starter culture organisms consumed daily by humans emerged recently from a commensal ancestor. As such, it is a useful model for genomic studies of bacterial domestication processes. Many streptococcal species form biofilms, a key feature of the major lifestyle of these bacteria in nature. However, few descriptions of S. thermophilus biofilms have been reported. An analysis of the ability of a representative collection of natural isolates to form biofilms revealed that S. thermophilus was a poor biofilm producer and that this characteristic was associated with an inability to attach firmly to surfaces. The identification of three biofilm-associated genes in the strain producing the most biofilms shed light on the reasons for the rarity of this trait in this species. These genes encode proteins involved in crucial stages of biofilm formation and are heterogeneously distributed between strains. One of the biofilm genes appears to have been acquired by horizontal transfer. The other two are located in loci presenting features of reductive evolution, and are absent from most of the strains analyzed. Their orthologs in commensal bacteria are involved in adhesion to host cells, suggesting that they are remnants of ancestral functions. The biofilm phenotype appears to be a commensal trait that has been lost during the genetic domestication of S. thermophilus, consistent with its adaptation to the milk environment and the selection of starter strains for dairy fermentations.

  20. BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut

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    Chaine Christian

    2008-01-01

    Full Text Available Abstract Background Cultivated peanut, Arachis hypogaea is an allotetraploid of recent origin, with an AABB genome. In common with many other polyploids, it seems that a severe genetic bottle-neck was imposed at the species origin, via hybridisation of two wild species and spontaneous chromosome duplication. Therefore, the study of the genome of peanut is hampered both by the crop's low genetic diversity and its polyploidy. In contrast to cultivated peanut, most wild Arachis species are diploid with high genetic diversity. The study of diploid Arachis genomes is therefore attractive, both to simplify the construction of genetic and physical maps, and for the isolation and characterization of wild alleles. The most probable wild ancestors of cultivated peanut are A. duranensis and A. ipaënsis with genome types AA and BB respectively. Results We constructed and characterized two large-insert libraries in Bacterial Artificial Chromosome (BAC vector, one for each of the diploid ancestral species. The libraries (AA and BB are respectively c. 7.4 and c. 5.3 genome equivalents with low organelle contamination and average insert sizes of 110 and 100 kb. Both libraries were used for the isolation of clones containing genetically mapped legume anchor markers (single copy genes, and resistance gene analogues. Conclusion These diploid BAC libraries are important tools for the isolation of wild alleles conferring resistances to biotic stresses, comparisons of orthologous regions of the AA and BB genomes with each other and with other legume species, and will facilitate the construction of a physical map.

  1. Are Hox genes ancestrally involved in axial patterning? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria.

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    Roxane Chiori

    Full Text Available BACKGROUND: The early evolution and diversification of Hox-related genes in eumetazoans has been the subject of conflicting hypotheses concerning the evolutionary conservation of their role in axial patterning and the pre-bilaterian origin of the Hox and ParaHox clusters. The diversification of Hox/ParaHox genes clearly predates the origin of bilaterians. However, the existence of a "Hox code" predating the cnidarian-bilaterian ancestor and supporting the deep homology of axes is more controversial. This assumption was mainly based on the interpretation of Hox expression data from the sea anemone, but growing evidence from other cnidarian taxa puts into question this hypothesis. METHODOLOGY/PRINCIPAL FINDINGS: Hox, ParaHox and Hox-related genes have been investigated here by phylogenetic analysis and in situ hybridisation in Clytia hemisphaerica, an hydrozoan species with medusa and polyp stages alternating in the life cycle. Our phylogenetic analyses do not support an origin of ParaHox and Hox genes by duplication of an ancestral ProtoHox cluster, and reveal a diversification of the cnidarian HOX9-14 genes into three groups called A, B, C. Among the 7 examined genes, only those belonging to the HOX9-14 and the CDX groups exhibit a restricted expression along the oral-aboral axis during development and in the planula larva, while the others are expressed in very specialised areas at the medusa stage. CONCLUSIONS/SIGNIFICANCE: Cross species comparison reveals a strong variability of gene expression along the oral-aboral axis and during the life cycle among cnidarian lineages. The most parsimonious interpretation is that the Hox code, collinearity and conservative role along the antero-posterior axis are bilaterian innovations.

  2. Estimating ancestral proportions in a multi-ethnic US sample: implications for studies of admixed populations

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    Levran Orna

    2012-07-01

    Full Text Available Abstract This study was designed to determine the ancestral composition of a multi-ethnic sample collected for studies of drug addictions in New York City and Las Vegas, and to examine the reliability of self-identified ethnicity and three-generation family history data. Ancestry biographical scores for seven clusters corresponding to world major geographical regions were obtained using STRUCTURE, based on genotypes of 168 ancestry informative markers (AIMs, for a sample of 1,291 African Americans (AA, European Americans (EA, and Hispanic Americans (HA along with data from 1,051 HGDP-CEPH ‘diversity panel’ as a reference. Self-identified ethnicity and family history data, obtained in an interview, were accurate in identifying the individual major ancestry in the AA and the EA samples (approximately 99% and 95%, respectively but were not useful for the HA sample and could not predict the extent of admixture in any group. The mean proportions of the combined clusters corresponding to European and Middle Eastern populations in the AA sample, revealed by AIMs analysis, were 0.13. The HA subjects, predominantly Puerto Ricans, showed a highly variable hybrid contribution pattern of clusters corresponding to Europe (0.27, Middle East (0.27, Africa (0.20, and Central Asia (0.14. The effect of admixture on allele frequencies is demonstrated for two single-nucleotide polymorphisms (118A > G, 17 C > T of the mu opioid receptor gene (OPRM1. This study reiterates the importance of AIMs in defining ancestry, especially in admixed populations.

  3. Allelic lineages of the ficolin genes (FCNs are passed from ancestral to descendant primates.

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    Tina Hummelshøj

    Full Text Available The ficolins recognize carbohydrates and acetylated compounds on microorganisms and dying host cells and are able to activate the lectin pathway of the complement system. In humans, three ficolin genes have been identified: FCN1, FCN2 and FCN3, which encode ficolin-1, ficolin-2 and ficolin-3, respectively. Rodents have only two ficolins designated ficolin-A and ficolin-B that are closely related to human ficolin-1, while the rodent FCN3 orthologue is a pseudogene. Ficolin-2 and ficolin-3 have so far only been observed in humans. Thus, we performed a systematic investigation of the FCN genes in non-human primates. The exons and intron-exon boundaries of the FCN1-3 genes were sequenced in the following primate species: chimpanzee, gorilla, orangutan, rhesus macaque, cynomolgus macaque, baboon and common marmoset. We found that the exon organisation of the FCN genes was very similar between all the non-human primates and the human FCN genes. Several variations in the FCN genes were found in more than one primate specie suggesting that they were carried from one species to another including humans. The amino acid diversity of the ficolins among human and non-human primate species was estimated by calculating the Shannon entropy revealing that all three proteins are generally highly conserved. Ficolin-1 and ficolin-2 showed the highest diversity, whereas ficolin-3 was more conserved. Ficolin-2 and ficolin-3 were present in non-human primate sera with the same characteristic oligomeric structures as seen in human serum. Taken together all the FCN genes show the same characteristics in lower and higher primates. The existence of trans-species polymorphisms suggests that different FCN allelic lineages may be passed from ancestral to descendant species.

  4. Toxic and nontoxic components of botulinum neurotoxin complex are evolved from a common ancestral zinc protein

    Energy Technology Data Exchange (ETDEWEB)

    Inui, Ken [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo 102-8472 (Japan); Sagane, Yoshimasa [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Miyata, Keita [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo 102-8472 (Japan); Miyashita, Shin-Ichiro [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Suzuki, Tomonori [Department of Bacteriology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 2-5-1 Shikata-cho, Kita-ku, Okayama 700-8558 (Japan); Shikamori, Yasuyuki [Agilent Technologies International Japan, Ltd. Takaura-cho 9-1, Hachioji-shi, Tokyo 192-0033 (Japan); Ohyama, Tohru; Niwa, Koichi [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Watanabe, Toshihiro, E-mail: t-watana@bioindustry.nodai.ac.jp [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan)

    2012-03-16

    Highlights: Black-Right-Pointing-Pointer BoNT and NTNHA proteins share a similar protein architecture. Black-Right-Pointing-Pointer NTNHA and BoNT were both identified as zinc-binding proteins. Black-Right-Pointing-Pointer NTNHA does not have a classical HEXXH zinc-coordinating motif similar to that found in all serotypes of BoNT. Black-Right-Pointing-Pointer Homology modeling implied probable key residues involved in zinc coordination. -- Abstract: Zinc atoms play an essential role in a number of enzymes. Botulinum neurotoxin (BoNT), the most potent toxin known in nature, is a zinc-dependent endopeptidase. Here we identify the nontoxic nonhemagglutinin (NTNHA), one of the BoNT-complex constituents, as a zinc-binding protein, along with BoNT. A protein structure classification database search indicated that BoNT and NTNHA share a similar domain architecture, comprising a zinc-dependent metalloproteinase-like, BoNT coiled-coil motif and concanavalin A-like domains. Inductively coupled plasma-mass spectrometry analysis demonstrated that every single NTNHA molecule contains a single zinc atom. This is the first demonstration of a zinc atom in this protein, as far as we know. However, the NTNHA molecule does not possess any known zinc-coordinating motif, whereas all BoNT serotypes possess the classical HEXXH motif. Homology modeling of the NTNHA structure implied that a consensus K-C-L-I-K-X{sub 35}-D sequence common among all NTNHA serotype molecules appears to coordinate a single zinc atom. These findings lead us to propose that NTNHA and BoNT may have evolved distinct functional specializations following their branching out from a common ancestral zinc protein.

  5. Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes

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    Magdelenat Ghislaine

    2009-07-01

    Full Text Available Abstract Background The ParaHox gene cluster is the evolutionary sister to the Hox cluster. Whilst the role of the Hox cluster in patterning the anterior-posterior axis of bilaterian animals is well established, and the organisation of vertebrate Hox clusters is intimately linked to gene regulation, much less is known about the more recently discovered ParaHox cluster. ParaHox gene clustering, and its relationship to expression, has only been described in deuterostomes. Conventional protostome models (Drosophila melanogaster and Caenorhabditis elegans are secondarily derived with respect to ParaHox genes, suffering gene loss and cluster break-up. Results We provide the first evidence for ParaHox gene clustering from a less-derived protostome animal, the annelid Platynereis dumerilii. Clustering of these genes is thus not a sole preserve of the deuterostome lineage within Bilateria. This protostome ParaHox cluster is not entirely intact however, with Pdu-Cdx being on the opposite end of the same chromosome arm from Pdu-Gsx and Pdu-Xlox. From the genomic sequence around the P. dumerilii ParaHox genes the neighbouring genes are identified, compared with other taxa, and the ancestral arrangement deduced. Conclusion We relate the organisation of the ParaHox genes to their expression, and from comparisons with other taxa hypothesise that a relatively complex pattern of ParaHox gene expression existed in the protostome-deuterostome ancestor, which was secondarily simplified along several invertebrate lineages. Detailed comparisons of the gene content around the ParaHox genes enables the reconstruction of the genome surrounding the ParaHox cluster of the protostome-deuterostome ancestor, which existed over 550 million years ago.

  6. Toxic and nontoxic components of botulinum neurotoxin complex are evolved from a common ancestral zinc protein

    International Nuclear Information System (INIS)

    Highlights: ► BoNT and NTNHA proteins share a similar protein architecture. ► NTNHA and BoNT were both identified as zinc-binding proteins. ► NTNHA does not have a classical HEXXH zinc-coordinating motif similar to that found in all serotypes of BoNT. ► Homology modeling implied probable key residues involved in zinc coordination. -- Abstract: Zinc atoms play an essential role in a number of enzymes. Botulinum neurotoxin (BoNT), the most potent toxin known in nature, is a zinc-dependent endopeptidase. Here we identify the nontoxic nonhemagglutinin (NTNHA), one of the BoNT-complex constituents, as a zinc-binding protein, along with BoNT. A protein structure classification database search indicated that BoNT and NTNHA share a similar domain architecture, comprising a zinc-dependent metalloproteinase-like, BoNT coiled-coil motif and concanavalin A-like domains. Inductively coupled plasma-mass spectrometry analysis demonstrated that every single NTNHA molecule contains a single zinc atom. This is the first demonstration of a zinc atom in this protein, as far as we know. However, the NTNHA molecule does not possess any known zinc-coordinating motif, whereas all BoNT serotypes possess the classical HEXXH motif. Homology modeling of the NTNHA structure implied that a consensus K-C-L-I-K-X35-D sequence common among all NTNHA serotype molecules appears to coordinate a single zinc atom. These findings lead us to propose that NTNHA and BoNT may have evolved distinct functional specializations following their branching out from a common ancestral zinc protein.

  7. The ancestral activation promiscuity of ADP-glucose pyrophosphorylases from oxygenic photosynthetic organisms

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    Kuhn Misty L

    2013-02-01

    Full Text Available Abstract Background ADP-glucose pyrophosphorylase (ADP-Glc PPase catalyzes the first committed step in the synthesis of glycogen in bacteria and starch in algae and plants. In oxygenic photosynthetic organisms, ADP-Glc PPase is mainly activated by 3-phosphoglycerate (3-PGA and to a lesser extent by other metabolites. In this work, we analyzed the activation promiscuity of ADP-Glc PPase subunits from the cyanobacterium Anabaena PCC 7120, the green alga Ostreococcus tauri, and potato (Solanum tuberosum tuber by comparing a specificity constant for 3-PGA, fructose-1,6-bisphosphate (FBP, fructose-6-phosphate, and glucose-6-phosphate. Results The 3-PGA specificity constant for the enzymes from Anabaena (homotetramer, O. tauri, and potato tuber was considerably higher than for other activators. O. tauri and potato tuber enzymes were heterotetramers comprising homologous small and large subunits. Conversely, the O. tauri small subunit (OtaS homotetramer was more promiscuous because its FBP specificity constant was similar to that for 3-PGA. To explore the role of both OtaS and OtaL (O. tauri large subunit in determining the specificity of the heterotetramer, we knocked out the catalytic activity of each subunit individually by site-directed mutagenesis. Interestingly, the mutants OtaSD148A/OtaL and OtaS/OtaLD171A had higher specificity constants for 3-PGA than for FBP. Conclusions After gene duplication, OtaS seemed to have lost specificity for 3-PGA compared to FBP. This was physiologically and evolutionarily feasible because co-expression of both subunits restored the specificity for 3-PGA of the resulting heterotetrameric wild type enzyme. This widespread promiscuity seems to be ancestral and intrinsic to the enzyme family. Its presence could constitute an efficient evolutionary mechanism to accommodate the ADP-Glc PPase regulation to different metabolic needs.

  8. Functions of two distinct prolactin-releasing peptides evolved from a common ancestral gene

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    Tetsuya eTachibana

    2014-11-01

    Full Text Available Prolactin-releasing peptide (PrRP is one of the RF-amide peptides and was originally identified in the bovine hypothalamus as a stimulator of prolactin (PRL release. Independently, another RF-amide peptide was found in Japanese crucian carp and named Carassius RFa (C-RFa, which shows high homology to PrRP and stimulates PRL secretion in teleost fish. Therefore, C-RFa has been recognized as fish PrRP. However, recent work has revealed that PrRP and C-RFa in non-mammalian vertebrates are encoded by separate genes originated through duplication of an ancestral gene. Indeed, both PrRP and C-RFa are suggested to exist in teleost, amphibian, reptile, and avian species. Therefore, we propose that non-mammalian PrRP (C-RFa be renamed PrRP2. Despite a common evolutionary origin, PrRP2 appears to be a physiological regulator of PRL, whereas this is not a consistent role for PrRP itself. Further work revealed that the biological functions of PrRP and PrRP2 are not limited solely to PRL release, because they are also neuromodulators of several hypothalamus-pituitary axes and are involved in some brain circuits related to the regulation of food intake, stress, and cardiovascular functions. However, these actions appear to be different among vertebrates. For example, central injection of PrRP inhibits feeding behavior in rodents and teleosts while it stimulates it in chicks. Therefore, both PrRP and PrRP2 have acquired diverse actions through evolution. In this review, we integrate the burgeoning information of structures, expression profiles, and multiple biological actions of PrRP in higher vertebrates, as well as those of PrRP2 in non-mammals.

  9. Functions of two distinct "prolactin-releasing peptides" evolved from a common ancestral gene.

    Science.gov (United States)

    Tachibana, Tetsuya; Sakamoto, Tatsuya

    2014-01-01

    Prolactin-releasing peptide (PrRP) is one of the RF-amide peptides and was originally identified in the bovine hypothalamus as a stimulator of prolactin (PRL) release. Independently, another RF-amide peptide was found in Japanese crucian carp and named Carassius-RFa (C-RFa), which shows high homology to PrRP and stimulates PRL secretion in teleost fish. Therefore, C-RFa has been recognized as fish PrRP. However, recent work has revealed that PrRP and C-RFa in non-mammalian vertebrates are encoded by separate genes originated through duplication of an ancestral gene. Indeed, both PrRP and C-RFa are suggested to exist in teleost, amphibian, reptile, and avian species. Therefore, we propose that non-mammalian PrRP (C-RFa) be renamed PrRP2. Despite a common evolutionary origin, PrRP2 appears to be a physiological regulator of PRL, whereas this is not a consistent role for PrRP itself. Further work revealed that the biological functions of PrRP and PrRP2 are not limited solely to PRL release, because they are also neuromodulators of several hypothalamus-pituitary axes and are involved in some brain circuits related to the regulation of food intake, stress, and cardiovascular functions. However, these actions appear to be different among vertebrates. For example, central injection of PrRP inhibits feeding behavior in rodents and teleosts, while it stimulates it in chicks. Therefore, both PrRP and PrRP2 have acquired diverse actions through evolution. In this review, we integrate the burgeoning information of structures, expression profiles, and multiple biological actions of PrRP in higher vertebrates, as well as those of PrRP2 in non-mammals.

  10. Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates.

    Science.gov (United States)

    Weng, Mao-Lun; Blazier, John C; Govindu, Madhumita; Jansen, Robert K

    2014-03-01

    Geraniaceae plastid genomes are highly rearranged, and each of the four genera already sequenced in the family has a distinct genome organization. This study reports plastid genome sequences of six additional species, Francoa sonchifolia, Melianthus villosus, and Viviania marifolia from Geraniales, and Pelargonium alternans, California macrophylla, and Hypseocharis bilobata from Geraniaceae. These genome sequences, combined with previously published species, provide sufficient taxon sampling to reconstruct the ancestral plastid genome organization of Geraniaceae and the rearrangements unique to each genus. The ancestral plastid genome of Geraniaceae has a 4 kb inversion and a reduced, Pelargonium-like small single copy region. Our ancestral genome reconstruction suggests that a few minor rearrangements occurred in the stem branch of Geraniaceae followed by independent rearrangements in each genus. The genomic comparison demonstrates that a series of inverted repeat boundary shifts and inversions played a major role in shaping genome organization in the family. The distribution of repeats is strongly associated with breakpoints in the rearranged genomes, and the proportion and the number of large repeats (>20 bp and >60 bp) are significantly correlated with the degree of genome rearrangements. Increases in the degree of plastid genome rearrangements are correlated with the acceleration in nonsynonymous substitution rates (dN) but not with synonymous substitution rates (dS). Possible mechanisms that might contribute to this correlation, including DNA repair system and selection, are discussed. PMID:24336877

  11. Composition and evolution of the Ancestral South Sandwich Arc: Implications for the flow of deep ocean water and mantle through the Drake Passage Gateway

    Science.gov (United States)

    Pearce, J. A.; Hastie, A. R.; Leat, P. T.; Dalziel, I. W.; Lawver, L. A.; Barker, P. F.; Millar, I. L.; Barry, T. L.; Bevins, R. E.

    2014-12-01

    The Ancestral South Sandwich Arc (ASSA) has a short life-span of c. 20 m.y. (early Oligocene to middle-late Miocene) before slab retreat and subsequent 'resurrection' as the active South Sandwich Island Arc (SSIA). The ASSA is, however, significant because it straddled the eastern margin of the Drake Passage Gateway where it formed a potential barrier to deep ocean water and mantle flow from the Pacific to Atlantic. The ASSA may be divided into three parts, from north to south: the Central Scotia Sea (CSS), the Discovery segment, and the Jane segment. Published age data coupled with new geochemical data (major elements, trace elements, Hf-Nd-Sr-Pb isotopes) from the three ASSA segments place constraints on models for the evolution of the arc and hence gateway development. The CSS segment has two known periods of activity. The older, Oligocene, period produced basic-acidic, mostly calc-alkaline rocks, best explained in terms of subduction initiation volcanism of Andean-type (no slab rollback). The younger, middle-late Miocene period produced basic-acidic, high-K calc-alkaline rocks (lavas and pyroclastic rocks with abundant volcanigenic sediments) which, despite being erupted on oceanic crust, have continental arc characteristics best explained in terms of a large, hot subduction flux most typical of a syn- or post-collision arc setting. Early-middle Miocene volcanism in the Discovery and Jane arc segments is geochemically quite different, being typically tholeiitic and compositionally similar to many lavas from the active South Sandwich Island Arc front. There is indirect evidence for Western Pacific-type (slab rollback) subduction initiation in the southern part of the ASSA and for the back-arc basins (the Jane and Scan Basins) to have been active at the time of arc volcanism. Models for the death of the ASSA in the south following a series of ridge-trench collisions are not positively supported by any geochemical evidence of hot subduction, but cessation of

  12. Palaeoenvironmental and geochemical approach of Archaeocyath-rich facies from Lower Cambrian of Western Gondwana margin at Central Iberian Zone (Urda, Toledo Mountains, Spain)

    Science.gov (United States)

    Menéndez, Silvia; Rodríguez-Martínez, Marta; Moreno-Eris, Elena; Perejón, Antonio; Reitner, Joachim

    2010-05-01

    in Western Gondwana margin. Powdered microsamples have been analysed for their elemental and isotopic composition (δ13C values range from + 0.41 to + 3.05). Sulphur minerals and silicates where analyzed with XRD and wavelength-dispersive electron microprobe. Major elements were measured with ICP-OES and minor and trace elements were analyzed with ICP-MS. These are the first palaeontological, sedimetological, geochemical and isotopical data provided to reconstruct the depositional environment of these Archaeocyath-rich facies at the Western Gondwana margin. References Julivert, M., Fontboté, J.M., Ribeiro, A., Nabais Conde L.E. 1972. Mapa tectónico de la Península Ibérica y Baleares, Escala 1: 1.000.000, Memoria Explicativa [1974], 113 pp. Instituto Geológico y Minero de España. Perejón, A., Moreno-Eiris, E. 2006. Biostratigraphy and palaeobiography of the archaeocyaths on the south-western margin of Gondwana. Zeitschrift der Deutschen Gesellschaft für Geowissenschaften 157 (4): 611-627.

  13. Petrogenesis of the Early Cretaceous Laguila bimodal intrusive rocks from the Tethyan Himalaya: Implications for the break-up of Eastern Gondwana

    Science.gov (United States)

    Liu, Zheng; Zhou, Qing; Lai, Yang; Qing, Chengshi; Li, Yingxu; Wu, Jianyang; Xia, Xiangbiao

    2015-11-01

    The Kerguelen mantle plume triggered the rift of Eastern Gondwana to open the eastern Indian Ocean, with the formation of ~ 132 Ma Comei-Bunbury large igneous province (LIP). The Comei area is located in the eastern Tethyan Himalaya, paleogeographically belonging to Greater India. The Laguila bimodal intrusive rocks from the Comei area consist of mafic (gabbro-diabase) and felsic rocks (quartz monzonite-granodiorite). This paper presents detailed LA-ICP-MS zircon U-Pb chronology, major and trace elements, and Sr-Nd-Pb isotope geochemistry of the Laguila bimodal intrusive rocks, in order to constrain the early activity of the Kerguelen mantle plume. LA-ICP-MS zircon U-Pb dating shows that the Laguila intrusive rocks were emplaced in the Early Cretaceous (~ 134-130 Ma). The Laguila mafic rocks are enriched in LREE, LILE and HFSE, similar to those of oceanic island basalts (OIB). Their 87Sr/86Sri (0.7054 to 0.7066), 143Νd/144Nd (T) (0.512548 to 0.512619) and (206Pb/204Pb)t ratios (18.492 to 18.859) are comparable with those basalts derived by the Kerguelen hot spot. Elemental and isotopic data suggest that they were likely derived by partial melting of the Kerguelen plume source in the spinel-garnet transition zone (~ 60-80 km). The Laguila felsic rocks share most of the geochemical features of A-type granite and show different 87Sr/86Sri (0.7171 to 0.7204), 143Νd/144Nd (T) (0.511874 to 0.511956) and (206Pb/204Pb)t ratios (19.087 to 19.274) from those of the mafic rocks. They were likely derived by partial melting of crustal rocks at a shallow depth ( 150 km) underneath Greater India prevented the Kerguelen plume from large-scale melting because of the high pressure when the latter impinged onto the former at ~ 132 Ma. The shallow source (~ 60-80 km) of the Laguila mafic rocks indicate that they originated likely from a series of "diapirs" or "fingers" rising from the head of the Kerguelen plume, which penetrated into the thick lithospheric mantle of Eastern

  14. From source-to-sink: The Late Permian SW Gondwana paleogeography and sedimentary dispersion unraveled by a multi-proxy analysis

    Science.gov (United States)

    Alessandretti, Luciano; Machado, Rômulo; Warren, Lucas Veríssimo; Assine, Mario Luis; Lana, Cristiano

    2016-10-01

    The Late Permian sedimentary succession of the Paraná Basin, southern Brazil, provide a valuable source of information about sediment provenance, tectonic processes and, consequently, the paleogeography of the southwestern Gondwana supercontinent. In order to understand the patterns of sedimentary dispersal and reconstruct the Late Permian source-to-sink dynamic, we report a complete series of U-Pb ages and Hf isotopic compositions of detrital zircons from the Rio do Rasto Formation sandstones allied with detailed paleocurrent and sedimentologic data. Our integrated provenance study reveals a consistent sediment transport from the south to the north and northwest. According to the evaluation of zircon ages and Hf isotopes, it was possible to determine four distinct source areas: (i) a distant Late Paleozoic active magmatic arc located in the southwestern Gondwana margin (i.e. Gondwanides Orogen), corresponding to the North Patagonian Massif; (ii) recycling of orthoquartzites from the uplifted Paleozoic Ventania Fold Belt and immature sandstones from the Claromecó Foreland Basin in central-eastern Argentina and the Silurian-Devonian successions of the southern Paraná Basin (central-northern Uruguay) and North Patagonian Massif; (iii) exhumed areas of the Archean-Paleoproterozoic basement and Neoproterozoic to Early Paleozoic mobile belts of the Damara in southwestern Africa and Ribeira Fold Belt in Uruguay and southern Brazil; and (iv) southeastward provenance of Grenvillian (1.2-1.0 Ga) zircons coming from the mafic to intermediate Mesoproterozoic igneous units of the Namaqua-Natal Belt in South Africa and Namibia. These data allow us to argue that sediments deposited in the Paraná Basin during the Late Permian come from both short- and long-distance source areas. In this context, an important population of Permian detrital zircons comes from the Gondwanides Orogen in the south, probably carried by transcontinental alluvial systems. Close to the source area

  15. Western Pacific Typhoon Aircraft Fixes

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Western Pacific typhoon aircraft reconnaissance data from the years 1946 - 1965 and 1978, excluding 1952, were transcribed from original documents, or copy of...

  16. Pacific Studies: Quo Vadis?

    Directory of Open Access Journals (Sweden)

    Anne Holden Rønning

    2014-02-01

    Full Text Available Looking back to the past this paper discusses why Pacific studies and in particular Australasian studies became an area of interest in tertiary education in Europe. What subject areas initiated these studies, and how do past legacies shape the present? With cutbacks in higher education over the past two decades the future of interdisciplinary studies and the humanities looks bleak. At the same time due to global business and increased political communication across borders there is a vibrant interest in and need for such studies among businesses and students. For most Europeans the literature of settler countries, with their European legacy, makes access to ways of thought and culture easier than studies of countries with other mythological backgrounds. In today’s multicultural environment such studies can provide knowledge for an understanding of other cultures and increase tolerance of the ‘other’. Area studies have relevance to our situation in Europe with increased migrancy, not least as a result of Schengen and EU regulations.

  17. A Common Ancestral Mutation in CRYBB3 Identified in Multiple Consanguineous Families with Congenital Cataracts

    Science.gov (United States)

    Irum, Bushra; Khan, Arif O.; Wang, Qiwei; Li, David; Khan, Asma A.; Husnain, Tayyab; Akram, Javed; Riazuddin, Sheikh

    2016-01-01

    development. Conclusion Here, we report a common ancestral mutation in CRYBB3 associated with autosomal recessive congenital cataracts identified in four familial cases of Pakistani origin. PMID:27326458

  18. A Common Ancestral Mutation in CRYBB3 Identified in Multiple Consanguineous Families with Congenital Cataracts.

    Directory of Open Access Journals (Sweden)

    Xiaodong Jiao

    report a common ancestral mutation in CRYBB3 associated with autosomal recessive congenital cataracts identified in four familial cases of Pakistani origin.

  19. Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins

    Directory of Open Access Journals (Sweden)

    Coulson Richard MR

    2007-02-01

    Full Text Available Abstract Background In membrane trafficking, the mechanisms ensuring vesicle fusion specificity remain to be fully elucidated. Early models proposed that specificity was encoded entirely by SNARE proteins; more recent models include contributions from Rab proteins, Syntaxin-binding (SM proteins and tethering factors. Most information on membrane trafficking derives from an evolutionarily narrow sampling of model organisms. However, considering factors from a wider diversity of eukaryotes can provide both functional information on core systems and insight into the evolutionary history of the trafficking machinery. For example, the major Qa/syntaxin SNARE families are present in most eukaryotic genomes and likely each evolved via gene duplication from a single ancestral syntaxin before the existing eukaryotic groups diversified. This pattern is also likely for Rabs and various other components of the membrane trafficking machinery. Results We performed comparative genomic and phylogenetic analyses, when relevant, on the SM proteins and components of the tethering complexes, both thought to contribute to vesicle fusion specificity. Despite evidence suggestive of secondary losses amongst many lineages, the tethering complexes are well represented across the eukaryotes, suggesting an origin predating the radiation of eukaryotic lineages. Further, whilst we detect distant sequence relations between GARP, COG, exocyst and DSL1 components, these similarities most likely reflect convergent evolution of similar secondary structural elements. No similarity is found between the TRAPP and HOPS complexes and the other tethering factors. Overall, our data favour independent origins for the various tethering complexes. The taxa examined possess at least one homologue of each of the four SM protein families; since the four monophyletic families each encompass a wide diversity of eukaryotes, the SM protein families very likely evolved before the last common

  20. Effects of interleukin-10 on cutaneous wounds and scars in humans of African continental ancestral origin.

    Science.gov (United States)

    Kieran, Ingrid; Taylor, Catherine; Bush, Jim; Rance, Mark; So, Karen; Boanas, Adam; Metcalfe, Anthony; Hobson, Rosalind; Goldspink, Nick; Hutchison, John; Ferguson, Mark

    2014-01-01

    Scars in humans of African continental ancestry heal with an exaggerated inflammatory response and a generally wider scar. Interleukin-10 is an anti-inflammatory and antifibrotic cytokine. A randomized controlled trial in Caucasians found that exogenous interleukin-10 resulted in improved macroscopic scar appearance and reduced scar redness. We investigated the effects of interleukin-10 on cutaneous scarring in volunteers of African ancestral origin in an exploratory, single-center, within-subject, double-blind randomized controlled trial. Fifty-six subjects received two of four potential prerandomized concentrations of interleukin-10 (5, 25, 100, and 250 ng/100 µL) in two full-thickness incisions on the upper inner arms. Anatomically matching incisions on the contralateral arm were treated with placebo. Scars were excised at 1 month for histological analysis and were redosed with the same regimen. Resultant excision scars were followed up for 12 months for scar width measurement and scoring. Scoring was performed by trial doctors, subjects, and a panel. Incisions treated with 100 ng/100 µL interleukin-10 had significantly reduced microscopic scar widths. Incisions treated with 5 and 25 ng/100 µL interleukin-10 were also narrower, but not significantly. There were no differences observed in pro-inflammatory or pro-fibrotic markers between interleukin-10 and placebo treatment. There was no long-term evidence that 100 ng/100 µL interleukin-10 had a therapeutic effect on macroscopic scar width or appearance, as excisions treated with this concentration were significantly wider than placebo between 8 and 12 months of maturation. Doctors showed a trend toward favoring the macroscopic appearance of placebo-treated excisions compared with those treated with 250 ng/100 µL interleukin-10. Panelists scored placebo-treated excisions as significantly better-appearing than those treated with 250 ng/100 µL interleukin-10. Doctors' scores showed a

  1. The age of the Tunas formation in the Sauce Grande basin-Ventana foldbelt (Argentina): Implications for the Permian evolution of the southwestern margin of Gondwana

    Science.gov (United States)

    López-Gamundí, Oscar; Fildani, Andrea; Weislogel, Amy; Rossello, Eduardo

    2013-08-01

    New SHRIMP radiogenic isotope dating on zircons in tuffs (280.8 ± 1.9 Ma) confirms the Early Permian (Artinskian) age of the uppermost section of the Tunas Formation. Tuff-rich levels in the Tunas Formation are exposed in the Ventana foldbelt of central Argentina; they are part of a deltaic to fluvial section corresponding to the late overfilled stage of the Late Paleozoic Sauce Grande foreland basin. Recent SHRIMP dating of zircons from the basal Choiyoi volcanics exposed in western Argentina yielded an age of 281.4 ± 2.5 Ma (Rocha-Campos et al., 2011). The new data for the Tunas tuffs suggest that the volcanism present in the Sauce Grande basin can be considered as the distal equivalent of the earliest episodes of the Choiyoi volcanism of western Argentina. From the palaeoclimatic viewpoint the new Tunas SHRIMP age confirms that by early Artinskian glacial conditions ceased in the Sauce Grande basin and, probably, in adajacent basins in western Gondwana.

  2. 40Ar/ 39Ar dating of the Jurassic volcanic province of Patagonia: migrating magmatism related to Gondwana break-up and subduction

    Science.gov (United States)

    Féraud, G.; Alric, V.; Fornari, M.; Bertrand, H.; Haller, M.

    1999-10-01

    The Mesozoic large igneous province (LIP) of Patagonia (southern South America), which is one of the largest silicic provinces on Earth has been investigated by the 40Ar/ 39Ar method. Twenty-seven ages considered as valid, including twenty plateau ages, show that the volcanic activity, ranging from 187 to 144 Ma, occurred between and contemporaneously with the initial break-up of Gondwana (starting with the Karoo-Antarctic-Tasmanian (KAT) flood basalt province) in the east, and a subduction in the west. The data display a regular decreasing of ages from the ENE (187 Ma) to the WSW (144 Ma) along about 650 km, apparently related to the tectonic structure in half-grabens oriented NNW-SSE. The good fitting of this trend with the opening of the Rocas Verdes-Sarmiento marginal basin favors a space time evolution of this continental volcanism culminating towards the SSW in a continental disruption behind the magmatic arc. The observed age progression of volcanism may be the result of the variations of the physical characteristics of the subduction. The spreading and thermal effect of the KAT plume may have an additional effect and also could account for the unusually large volume of magma.

  3. Major shear zones of southern Brazil and Uruguay: escape tectonics in the eastern border of Rio de La plata and Paranapanema cratons during the Western Gondwana amalgamation

    Science.gov (United States)

    Passarelli, C. R.; Basei, M. A. S.; Wemmer, K.; Siga, O.; Oyhantçabal, P.

    2011-04-01

    The Mantiqueira Province represents a series of supracrustal segments of the South-American counterpart formed during the Gondwana Supercontinent agglutination. In this crustal domain, the process of escape tectonics played a conspicuous role, generating important NE-N-S-trending lineaments. The oblique component of the motions of the colliding tectonic blocks defined the transpressional character of the main suture zones: Lancinha-Itariri, Cubatão-Arcádia-Areal, Serrinha-Rio Palmital in the Ribeira Belt and Sierra Ballena-Major Gercino in the Dom Feliciano Belt. The process as a whole lasted for ca. 60 Ma, since the initial collision phase until the lateral escape phase predominantly marked by dextral and subordinate sinistral transpressional shear zones. In the Dom Feliciano Belt, southern Brazil and Uruguay, transpressional event at 630-600 Ma is recognized and in the Ribeira Belt, despite less coevally, the transpressional event occurred between 590 and 560 Ma in its northern-central portion and between ca. 625 and 595 Ma in its central-southern portion. The kinematics of several shear zones with simultaneous movement in opposite directions at their terminations is explained by the sinuosity of these lineaments in relation to a predominantly continuous westward compression.

  4. The African and Pacific Superplume Structures Constrained by Assembly and Breakup of Pangea

    Science.gov (United States)

    Zhang, N.; Zhong, S.; Leng, W.; Li, Z.

    2009-12-01

    Seismic tomography studies indicate that the Earth’s mantle structure is characterized by African and Pacific seismically slow velocity anomalies (i.e., superplumes) and circum-Pacific seismically fast anomalies (i.e., a globally spherical harmonic degree-2 structure). McNamara and Zhong (2005) have demonstrated that the African and Pacific superplume structures result from dynamic interaction between mantle convection and surface plate motion history in the last 120 Ma. However, their models produce slightly stronger degree 3 structure than degree 2 near the CMB. Here, we construct a proxy model of plate motions for the African hemisphere for the last 450 Ma since the Early Paleozoic using the paleogeographic reconstruction of continents constrained by paleomagnetic and geological observations. Using this proxy model for plate motion history as the time-dependent surface boundary conditions for a 3-dimensional spherical model of thermochemical mantle convection, we calculate the present-day mantle structure and explore the evolution of mantle structures since the Early Paleozoic. Our model calculations reproduce well the present-day mantle structure including the African and Pacific superplumes. The power spectra of our calculated present-day temperature field shows that the strongest power occurs at degree 2 in the lower mantle while in the upper mantle the strongest power is at degree 3. The degree correlation between tomography model S20RTS and our calculated temperature field shows a high correlation at the degree 1 and degree 2 in the lower mantle while the upper mantle and the short wavelength structures do not correlate well. The summed degree correlation for the lower mantle shows a relatively good correlation for the bottom 300 km of the mantle but the correlation is significantly reduced at depth 600 km above the CMB. For the evolution of mantle structures, we focus on the evolution of the African superplume. Our results suggest that the mantle in the

  5. La modernidad, el cuidado de la salud y la cultura ancestral

    Directory of Open Access Journals (Sweden)

    Ana Cecilia Becerra

    2008-09-01

    Full Text Available La modernidad es tanto un período histórico como un concepto filosófico y sociológico que impuso la razón y el método formal sobre todos los actos políticos, sociales y epistemológicos de las distintas culturas del mundo. La modernidad se construyó en su momento sobre el imaginario de la superioridad europea1 y durante el período colonial fue la causante del proceso avasallador de exterminio y de desconocimiento de las sociedades y culturas indígenas de América.Ella, con sus valores patriarcales y formales, desplazó la ética del cuidado y del abrigo de los pueblos autóctonos imponiendo una lógica racional, calculadora e impersonal. Al desconocer y casi negar en su totalidad la cosmovisión ancestral de curar y cuidar, relegó los ejercicios profesionalizantes de la salud bajo el amparo de la mercantilización del capitalismo mundial integrado.La modernidad, desde el inicio y en la actualidad, ha impregnado la cultura de todos los pueblos y ha condicionado todos los actos académicos en las instituciones escolares y universitarias. La perpetuación de un modelo positivista y occidentalizado ha sido una constante en las aulas universitarias y en las disciplinas, sobre todo en las ciencias de la salud. Históricamente el conocimiento en salud ha sido construido con base en el enfoque positivista y la concepción biologista del proceso salud-enfermedad, lo cual lleva a una fragmentación del saber, disyunción del sujeto y el objeto en la producción del conocimiento, y a una incapacidad de asumir al ser humano en todas sus dimensiones, razón de ser de la acción en salud, como totalidad y unidad integral2.Este panorama aquí planteado deja un gran reto epistemológico a los profesionales y a los docentes de las ciencias de la salud en general y de enfermería en particular. Vista la enfermería desde la fundamentación del cuidado de la salud, no se puede descontextualizar ni escindir de nuestra propia cultura, pretendiendo

  6. La modernidad, el cuidado de la salud y la cultura ancestral.

    Directory of Open Access Journals (Sweden)

    Ana Cecilia Becerra

    2009-11-01

    Full Text Available La modernidad es tanto un período histórico como un concepto filosófico y sociológico que impuso la razón y el método formal sobre todos los actos políticos, sociales y epistemológicos de las distintas culturas del mundo. La modernidad se construyó en su momento sobre el imaginario de la superioridad europea1 y durante el período colonial fue la causante del proceso avasallador de exterminio y de desconocimiento de las sociedades y culturas indígenas de América. Ella, con sus valores patriarcales y formales, desplazó la ética del cuidado y del abrigo de los pueblos autóctonos imponiendo una lógica racional, calculadora e impersonal. Al desconocer y casi negar en su totalidad la cosmovisión ancestral de curar y cuidar, relegó los ejercicios profesionalizantes de la salud bajo el amparo de la mercantilización del capitalismo mundial integrado. La modernidad, desde el inicio y en la actualidad, ha impregnado la cultura de todos los pueblos y ha condicionado todos los actos académicos en las instituciones escolares y universitarias. La perpetuación de un modelo positivista y occidentalizado ha sido una constante en las aulas universitarias y en las disciplinas, sobre todo en las ciencias de la salud. Históricamente el conocimiento en salud ha sido construido con base en el enfoque positivista y la concepción biologista del proceso salud-enfermedad, lo cual lleva a una fragmentación del saber, disyunción del sujeto y el objeto en la producción del conocimiento, y a una incapacidad de asumir al ser humano en todas sus dimensiones, razón de ser de la acción en salud, como totalidad y unidad integral2. Este panorama aquí planteado deja un gran reto epistemológico a los profesionales y a los docentes de las ciencias de la salud en general y de enfermería en particular. Vista la enfermería desde la fundamentación del cuidado de la salud, no se puede descontextualizar ni escindir de nuestra propia cultura, pretendiendo

  7. Tropical Pacific Decadal Variability in Subsurface Temperature

    Institute of Scientific and Technical Information of China (English)

    LIU Qinyu; XU Lixiao; LU Jiuyou; WANG Qi

    2012-01-01

    The nature decadal variability of the equatorial Pacific subsurface temperature is examined in the control simulation with the Geophysical Fluid Dynamics Laboratory coupled model CM2.1.The dominant mode of the subsurface temperature variations in the equator Pacific features a 20-40 year period and is North-South asymmetric about the equator.Decadal variations of the thermocline are most pronounced in the southwest of the Tropical Pacific.Decadal variation of the north-south asymmetric Sea Surface wind in the tropical Pacific,especially in the South Pacific Convergence,is the dominant mechanism of the nature decadal variation of the subsurface temperature in the equatorial Pacific.

  8. Human Genetic Ancestral Composition Correlates with the Origin of Mycobacterium leprae Strains in a Leprosy Endemic Population

    Science.gov (United States)

    Cardona-Castro, Nora; Cortés, Edwin; Beltrán, Camilo; Romero, Marcela; Badel-Mogollón, Jaime E.; Bedoya, Gabriel

    2015-01-01

    Recent reports have suggested that leprosy originated in Africa, extended to Asia and Europe, and arrived in the Americas during European colonization and the African slave trade. Due to colonization, the contemporary Colombian population is an admixture of Native-American, European and African ancestries. Because microorganisms are known to accompany humans during migrations, patterns of human migration can be traced by examining genomic changes in associated microbes. The current study analyzed 118 leprosy cases and 116 unrelated controls from two Colombian regions endemic for leprosy (Atlantic and Andean) in order to determine possible associations of leprosy with patient ancestral background (determined using 36 ancestry informative markers), Mycobacterium leprae genotype and/or patient geographical origin. We found significant differences between ancestral genetic composition. European components were predominant in Andean populations. In contrast, African components were higher in the Atlantic region. M. leprae genotypes were then analyzed for cluster associations and compared with the ancestral composition of leprosy patients. Two M. leprae principal clusters were found: haplotypes C54 and T45. Haplotype C54 associated with African origin and was more frequent in patients from the Atlantic region with a high African component. In contrast, haplotype T45 associated with European origin and was more frequent in Andean patients with a higher European component. These results suggest that the human and M. leprae genomes have co-existed since the African and European origins of the disease, with leprosy ultimately arriving in Colombia during colonization. Distinct M. leprae strains followed European and African settlement in the country and can be detected in contemporary Colombian populations. PMID:26360617

  9. Extensive Chromosomal Reorganization in the Evolution of New World Muroid Rodents (Cricetidae, Sigmodontinae): Searching for Ancestral Phylogenetic Traits

    Science.gov (United States)

    Pereira, Adenilson Leão; Malcher, Stella Miranda; Nagamachi, Cleusa Yoshiko; O’Brien, Patricia Caroline Mary; Ferguson-Smith, Malcolm Andrew; Mendes-Oliveira, Ana Cristina; Pieczarka, Julio Cesar

    2016-01-01

    Sigmodontinae rodents show great diversity and complexity in morphology and ecology. This diversity is accompanied by extensive chromosome variation challenging attempts to reconstruct their ancestral genome. The species Hylaeamys megacephalus–HME (Oryzomyini, 2n = 54), Necromys lasiurus—NLA (Akodontini, 2n = 34) and Akodon sp.–ASP (Akodontini, 2n = 10) have extreme diploid numbers that make it difficult to understand the rearrangements that are responsible for such differences. In this study we analyzed these changes using whole chromosome probes of HME in cross-species painting of NLA and ASP to construct chromosome homology maps that reveal the rearrangements between species. We include data from the literature for other Sigmodontinae previously studied with probes from HME and Mus musculus (MMU) probes. We also use the HME probes on MMU chromosomes for the comparative analysis of NLA with other species already mapped by MMU probes. Our results show that NLA and ASP have highly rearranged karyotypes when compared to HME. Eleven HME syntenic blocks are shared among the species studied here. Four syntenies may be ancestral to Akodontini (HME2/18, 3/25, 18/25 and 4/11/16) and eight to Sigmodontinae (HME26, 1/12, 6/21, 7/9, 5/17, 11/16, 20/13 and 19/14/19). Using MMU data we identified six associations shared among rodents from seven subfamilies, where MMU3/18 and MMU8/13 are phylogenetic signatures of Sigmodontinae. We suggest that the associations MMU2entire, MMU6proximal/12entire, MMU3/18, MMU8/13, MMU1/17, MMU10/17, MMU12/17, MMU5/16, MMU5/6 and MMU7/19 are part of the ancestral Sigmodontinae genome. PMID:26800516

  10. Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors.

    Science.gov (United States)

    Burgess, Ralph; Yang, Ziheng

    2008-09-01

    Estimation of population parameters for the common ancestors of humans and the great apes is important in understanding our evolutionary history. In particular, inference of population size for the human-chimpanzee common ancestor may shed light on the process by which the 2 species separated and on whether the human population experienced a severe size reduction in its early evolutionary history. In this study, the Bayesian method of ancestral inference of Rannala and Yang (2003. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics. 164:1645-1656) was extended to accommodate variable mutation rates among loci and random species-specific sequencing errors. The model was applied to analyze a genome-wide data set of approximately 15,000 neutral loci (7.4 Mb) aligned for human, chimpanzee, gorilla, orangutan, and macaque. We obtained robust and precise estimates for effective population sizes along the hominoid lineage extending back approximately 30 Myr to the cercopithecoid divergence. The results showed that ancestral populations were 5-10 times larger than modern humans along the entire hominoid lineage. The estimates were robust to the priors used and to model assumptions about recombination. The unusually low X chromosome divergence between human and chimpanzee could not be explained by variation in the male mutation bias or by current models of hybridization and introgression. Instead, our parameter estimates were consistent with a simple instantaneous process for human-chimpanzee speciation but showed a major reduction in X chromosome effective population size peculiar to the human-chimpanzee common ancestor, possibly due to selective sweeps on the X prior to separation of the 2 species. PMID:18603620

  11. Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme.

    Directory of Open Access Journals (Sweden)

    Maritrini Colón

    Full Text Available BACKGROUND: Gene duplication is a key evolutionary mechanism providing material for the generation of genes with new or modified functions. The fate of duplicated gene copies has been amply discussed and several models have been put forward to account for duplicate conservation. The specialization model considers that duplication of a bifunctional ancestral gene could result in the preservation of both copies through subfunctionalization, resulting in the distribution of the two ancestral functions between the gene duplicates. Here we investigate whether the presumed bifunctional character displayed by the single branched chain amino acid aminotransferase present in K. lactis has been distributed in the two paralogous genes present in S. cerevisiae, and whether this conservation has impacted S. cerevisiae metabolism. PRINCIPAL FINDINGS: Our results show that the KlBat1 orthologous BCAT is a bifunctional enzyme, which participates in the biosynthesis and catabolism of branched chain aminoacids (BCAAs. This dual role has been distributed in S. cerevisiae Bat1 and Bat2 paralogous proteins, supporting the specialization model posed to explain the evolution of gene duplications. BAT1 is highly expressed under biosynthetic conditions, while BAT2 expression is highest under catabolic conditions. Bat1 and Bat2 differential relocalization has favored their physiological function, since biosynthetic precursors are generated in the mitochondria (Bat1, while catabolic substrates are accumulated in the cytosol (Bat2. Under respiratory conditions, in the presence of ammonium and BCAAs the bat1Δ bat2Δ double mutant shows impaired growth, indicating that Bat1 and Bat2 could play redundant roles. In K. lactis wild type growth is independent of BCAA degradation, since a Klbat1Δ mutant grows under this condition. CONCLUSIONS: Our study shows that BAT1 and BAT2 differential expression and subcellular relocalization has resulted in the distribution of the

  12. The ear region of earliest known elephant relatives: new light on the ancestral morphotype of proboscideans and afrotherians.

    Science.gov (United States)

    Schmitt, Arnaud; Gheerbrant, Emmanuel

    2016-01-01

    One of the last major clades of placental mammals recognized was the Afrotheria, which comprises all main endemic African mammals. This group includes the ungulate-like paenungulates, and among them the elephant order Proboscidea. Among afrotherians, the petrosal anatomy remains especially poorly known in Proboscidea. We provide here the first comparative CT scan study of the ear region of the two earliest known proboscideans (and paenungulates), Eritherium and Phosphatherium, from the mid Palaeocene and early Eocene of Morocco. It is helpful to characterize the ancestral morphotype of Proboscidea to understand petrosal evolution within proboscideans and afrotherians. The petrosal structure of these two taxa shows several differences. Eritherium is more primitive than Phosphatherium and closer to the basal paenungulate Ocepeia in several traits (inflated tegmen tympani, very deep fossa subarcuata and ossified canal for ramus superior of stapedial artery). Phosphatherium, however, retains plesiomorphies such as a true crus commune secundaria. A cladistic analysis of petrosal traits of Eritherium and Phosphatherium among Proboscidea results in a single tree with a low level of homoplasy in which Eritherium, Phosphatherium and Numidotherium are basal. This contrasts with previous phylogenetic studies showing homoplasy in petrosal evolution among Tethytheria. It suggests that evolutionary modalities of petrosal characters differ with the taxonomic level among Afrotheria: noticeable convergences occurred among the paenungulate orders, whereas little homoplasy seems to have occurred at intra-ordinal level in orders such as Proboscidea. Most petrosal features of both Eritherium and Phosphatherium are primitive. The ancestral petrosal morphotype of Proboscidea was not specialized but was close to the generalized condition of paenungulates, afrotherians, and even eutherians. This is consistent with cranial and dental characters of Eritherium, suggesting that the ancestral

  13. Ancestral polymorphism at the major histocompatibility complex (MHCIIß in the Nesospiza bunting species complex and its sister species (Rowettia goughensis

    Directory of Open Access Journals (Sweden)

    van Rensburg Alexandra

    2012-08-01

    Full Text Available Abstract Background The major histocompatibility complex (MHC is an important component of the vertebrate immune system and is frequently used to characterise adaptive variation in wild populations due to its co-evolution with pathogens. Passerine birds have an exceptionally diverse MHC with multiple gene copies and large numbers of alleles compared to other avian taxa. The Nesospiza bunting species complex (two species on Nightingale Island; one species with three sub-species on Inaccessible Island represents a rapid adaptive radiation at a small, isolated archipelago, and is thus an excellent model for the study of adaptation and speciation. In this first study of MHC in Nesospiza buntings, we aim to characterize MHCIIß variation, determine the strength of selection acting at this gene region and assess the level of shared polymorphism between the Nesospiza species complex and its putative sister taxon, Rowettia goughensis, from Gough Island. Results In total, 23 unique alleles were found in 14 Nesospiza and 2 R. goughensis individuals encoding at least four presumably functional loci and two pseudogenes. There was no evidence of ongoing selection on the peptide binding region (PBR. Of the 23 alleles, 15 were found on both the islands inhabited by Nesospiza species, and seven in both Nesospiza and Rowettia; indications of shared, ancestral polymorphism. A gene tree of Nesospiza MHCIIß alleles with several other passerine birds shows three highly supported Nesospiza-specific groups. All R. goughensis alleles were shared with Nesospiza, and these alleles were found in all three Nesospiza sequence groups in the gene tree, suggesting that most of the observed variation predates their phylogenetic split. Conclusions Lack of evidence of selection on the PBR, together with shared polymorphism across the gene tree, suggests that population variation of MHCIIß among Nesospiza and Rowettia is due to ancestral polymorphism rather than local selective

  14. North Pacific Pelagic Seabird Database (NPPSD)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The North Pacific Pelagic Seabird Database (NPPSD) was created in 2005 to consolidate data on the oceanic distribution of marine bird species in the North Pacific....

  15. Pacific Northwest Salmon Habitat Project Database

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In the Pacific Northwest Salmon Habitat Project Database Across the Pacific Northwest, both public and private agents are working to improve riverine habitat for a...

  16. New insights from U Pb zircon dating of Early Ordovician magmatism on the northern Gondwana margin: The Urra Formation (SW Iberian Massif, Portugal)

    Science.gov (United States)

    Solá, A. R.; Pereira, M. F.; Williams, I. S.; Ribeiro, M. L.; Neiva, A. M. R.; Montero, P.; Bea, F.; Zinger, T.

    2008-12-01

    The Central Iberian-Ossa-Morena transition zone (SW Iberian Massif) represents a segment of the northern Gondwana margin with a long geodynamic evolution, characterized by the superposition of Cadomian and Variscan events. The Early Ordovician is mainly represented by porphyritic felsic volcaniclastic rocks (the Urra Formation) that pass up into a siliciclastic sediments typical of the Central Iberian Zone (Lower Ordovician Armorican Quartzite Formation). The Urra Formation unconformably overlies the previously deformed and metamorphosed Ediacaran sediments of the Série Negra (with Ossa-Morena Zone paleogeographic affinity). New SHRIMP zircon data obtained from the Urra Formation volcaniclastic rocks indicate an Early Ordovician age ( 206Pb/ 238U ages ranging from 494.6 ± 6.8 Ma to 488.3 ± 5.2 Ma) for this magmatic event. The inherited zircon cores indicate the presence of multicycle protoliths with different Precambrian ages: Neoproterozoic (698-577 Ma), Paleoproterozoic (2.33 Ga) and Paleoarchean (3.2-3.3 Ga). There is a noticeable lack of Meso- to Neoarchean and Mesoproterozoic ages. The data support the hypothesis that the volcaniclastic rocks were derived by partial melting of Cadomian basement (linked to a West African Craton provenance). The Urra Formation volcaniclastic rocks have rhyolitic to dacitic compositions, are peraluminous and similar to calc-alkaline high-K series suites elsewhere. Isotopic signatures present a wide range of values ( 87Sr/ 86Sr) t = 0.7085-0.7190, more restricted ɛNd t (- 2.65 to - 0.35) and δ18O = 9.63-10.34‰, compatible with magmas derived from crustal rocks, including portions of the lower crust. Some samples show disturbance of the Rb-Sr system as shown by unrealistic values for ( 87Sr/ 86Sr) t < 0.703, probably due to Variscan deformation and metamorphism. The volcaniclastic rocks with a significant sedimentary contribution (upper unit) are distinguished from the others by the lowest values of ɛNd t (- 5.53 to - 4

  17. Geology and metallogeny of the Ar Rayn terrane, eastern Arabian shield: Evolution of a Neoproterozoic continental-margin arc during assembly of Gondwana within the East African orogen

    Science.gov (United States)

    Doebrich, J.L.; Al-Jehani, A. M.; Siddiqui, A.A.; Hayes, T.S.; Wooden, J.L.; Johnson, P.R.

    2007-01-01

    characteristics of the Ar Rayn terrane are analogous to the Andean continental margin of Chile, with opposite subduction polarity. The Ar Rayn terrane represents a continental margin arc that lay above a west-dipping subduction zone along a continental block represented by the Afif composite terrane. The concentration of epithermal, porphyry Cu and IOCG mineral systems, of central arc affiliation, along the AAF suggests that the AAF is not an ophiolitic suture zone, but originated as a major intra-arc fault that localized magmatism and mineralization. West-directed oblique subduction and ultimate collision with a land mass from the east (East Gondwana?) resulted in major transcurrent displacement along the AAF, bringing the eastern part of the arc terrane to its present exposed position, juxtaposed across the AAF against a back-arc basin assemblage represented by the Abt schist of the Ad Dawadimi terrane. Our findings indicate that arc formation and accretionary processes in the Arabian shield were still ongoing into the latest Neoproterozoic (Ediacaran), to about 620-600 Ma, and lead us to conclude that evolution of the Ar Rayn terrane (arc formation, accretion, syn- to postorogenic plutonism) defines a final stage of assembly of the Gondwana supercontinent along the northeastern margin of the East African orogen. ?? 2007 Elsevier B.V. All rights reserved.

  18. 76 FR 33641 - Safety Zone; The Pacific Grove Feast of Lanterns, Fireworks Display, Pacific Grove, CA

    Science.gov (United States)

    2011-06-09

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; The Pacific Grove Feast of Lanterns... Lovers Point, in Pacific Grove, California in support of the Pacific Grove Feast of Lanterns Fireworks... regulations must be in effect during the event. Basis and Purpose Pacific Grove Feast of Lanterns will...

  19. Moa's Ark or volant ghosts of Gondwana? Insights from nineteen years of ancient DNA research on the extinct moa (Aves: Dinornithiformes) of New Zealand.

    Science.gov (United States)

    Allentoft, Morten E; Rawlence, Nicolas J

    2012-01-20

    The moa (Aves: Dinornithiformes) of New Zealand represent one of the extinct iconic taxa that define the field of ancient DNA (aDNA), and after almost two decades of genetic scrutiny of bones, feathers, coprolites, mummified tissue, eggshell, and sediments, our knowledge of these prehistoric giants has increased significantly. Thanks to molecular and morphological-based research, the insights that have been obtained into moa phylogenetics, phylogeography, and palaeobiology exceeds that of any other extinct taxon. This review documents the strengths of applying a multidisciplinary approach when studying extinct taxa but also shows that cross-disciplinary controversies still remain at the most fundamental levels, with highly conflicting interpretations derived from aDNA and morphology. Moa species diversity, for example, is still heavily debated, as well as their relationship with other ratites and the mode of radiation. In addition to increasing our knowledge on a lineage of extinct birds, further insights into these aspects can clarify some of the basal splits in avian evolution, and the evolutionary implications of the breakup of the prehistoric supercontinent Gondwana. Did a flightless moa ancestor drift away on proto New Zealand (Moa's Ark) or did a volant ancestor arrive by flight? Here we provide an overview of 19 years of aDNA research on moa, critically assess the attempts and controversies in placing the moa lineage among palaeognath birds, and discuss the factors that facilitated the extensive radiation of moa. Finally, we identify the most obvious gaps in the current knowledge to address the future potential research areas in moa genetics.

  20. Australian provenance for Upper Permian to Cretaceous rocks forming accretionary complexes on the New Zealand sector of the Gondwana land margin

    International Nuclear Information System (INIS)

    U-Pb (SHRIMP) detrital zircon age patterns are reported for 12 samples of Permian to Cretaceous turbiditic quartzo-feldspathic sandstone from the Torlesse and Waipapa suspect terranes of New Zealand. Their major Permian to Triassic, and minor Early Palaeozoic and Mesoproterozoic, age components indicate that most sediment was probably derived from the Carboniferous to Triassic New England Orogen in northeastern Australia. Rapid deposition of voluminous Torlesse/Waipapa turbidite fans during the Late Permian to Late Triassic appears to have been directly linked to uplift and exhumation of the magmatically active orogen during the 265-230 Ma Hunter-Bowen event. This period of cordilleran-type orogeny allowed transport of large volumes of quartzo-feldspathic sediment across the convergent Gondwana land margin. Post-Triassic depocentres also received (recycled?) sediment from the relict orogen as well as from Jurassic and Cretaceous volcanic provinces now offshore from southern Queensland and northern New South Wales. The detailed provenance-age fingerprints provided by the detrital zircon data are also consistent with progressive southward derivation of sediment: from northeastern Queensland during the Permian, southeastern Queensland during the Triassic, and northeastern New South Wales - Lord Howe Rise - Norfolk Ridge during the Jurassic to Cretaceous. Although the dextral sense of displacement is consistent with the tectonic regime during this period, detailed characterisation of source terranes at this scale is hindered by the scarcity of published zircon age data for igneous and sedimentary rocks in Queensland and northern New South Wales. Mesoproterozoic and Neoproterozoic age components cannot be adequately matched with likely source terranes in the Australian-Antarctic Precambrian craton, and it is possible they originated in the Proterozoic cores of the Cathaysia and Yangtze Blocks of southeast China. Copyright (1999) Geological Society of Australia

  1. Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.

    Science.gov (United States)

    Vakirlis, Nikolaos; Sarilar, Véronique; Drillon, Guénola; Fleiss, Aubin; Agier, Nicolas; Meyniel, Jean-Philippe; Blanpain, Lou; Carbone, Alessandra; Devillers, Hugo; Dubois, Kenny; Gillet-Markowska, Alexandre; Graziani, Stéphane; Huu-Vang, Nguyen; Poirel, Marion; Reisser, Cyrielle; Schott, Jonathan; Schacherer, Joseph; Lafontaine, Ingrid; Llorente, Bertrand; Neuvéglise, Cécile; Fischer, Gilles

    2016-07-01

    Reconstructing genome history is complex but necessary to reveal quantitative principles governing genome evolution. Such reconstruction requires recapitulating into a single evolutionary framework the evolution of genome architecture and gene repertoire. Here, we reconstructed the genome history of the genus Lachancea that appeared to cover a continuous evolutionary range from closely related to more diverged yeast species. Our approach integrated the generation of a high-quality genome data set; the development of AnChro, a new algorithm for reconstructing ancestral genome architecture; and a comprehensive analysis of gene repertoire evolution. We found that the ancestral genome of the genus Lachancea contained eight chromosomes and about 5173 protein-coding genes. Moreover, we characterized 24 horizontal gene transfers and 159 putative gene creation events that punctuated species diversification. We retraced all chromosomal rearrangements, including gene losses, gene duplications, chromosomal inversions and translocations at single gene resolution. Gene duplications outnumbered losses and balanced rearrangements with 1503, 929, and 423 events, respectively. Gene content variations between extant species are mainly driven by differential gene losses, while gene duplications remained globally constant in all lineages. Remarkably, we discovered that balanced chromosomal rearrangements could be responsible for up to 14% of all gene losses by disrupting genes at their breakpoints. Finally, we found that nonsynonymous substitutions reached fixation at a coordinated pace with chromosomal inversions, translocations, and duplications, but not deletions. Overall, we provide a granular view of genome evolution within an entire eukaryotic genus, linking gene content, chromosome rearrangements, and protein divergence into a single evolutionary framework.

  2. Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses.

    Science.gov (United States)

    Witkowski, Peter T; Drexler, Jan F; Kallies, René; Ličková, Martina; Bokorová, Silvia; Mananga, Gael D; Szemes, Tomáš; Leroy, Eric M; Krüger, Detlev H; Drosten, Christian; Klempa, Boris

    2016-07-01

    Until recently, hantaviruses (family Bunyaviridae) were believed to originate from rodent reservoirs. However, genetically distinct hantaviruses were lately found in shrews and moles, as well as in bats from Africa and Asia. Bats (order Chiroptera) are considered important reservoir hosts for emerging human pathogens. Here, we report on the identification of a novel hantavirus, provisionally named Makokou virus (MAKV), in Noack's Roundleaf Bat (Hipposideros ruber) in Gabon, Central Africa. Phylogenetic analysis of the genomic l-segment showed that MAKV was the most closely related to other bat-borne hantaviruses and shared a most recent common ancestor with the Asian hantaviruses Xuan Son and Laibin. Breakdown of the virus load in a bat animal showed that MAKV resembles rodent-borne hantaviruses in its organ distribution in that it predominantly occurred in the spleen and kidney; this provides a first insight into the infection pattern of bat-borne hantaviruses. Ancestral state reconstruction based on a tree of l gene sequences of all relevant hantavirus lineages was combined with phylogenetic fossil host hypothesis testing, leading to a statistically significant rejection of the mammalian superorder Euarchontoglires (including rodents) but not the superorder Laurasiatheria (including shrews, moles, and bats) as potential hosts of ancestral hantaviruses at most basal tree nodes. Our data supports the emerging concept of bats as previously overlooked hantavirus reservoir hosts. PMID:27051047

  3. Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position

    Directory of Open Access Journals (Sweden)

    Lang Michael

    2010-11-01

    Full Text Available Abstract Background The modern coelacanth (Latimeria is the extant taxon of a basal sarcopterygian lineage and sister group to tetrapods. Apart from certain apomorphic traits, its morphology is characterized by a high degree of retention of ancestral vertebrate structures and little morphological change. An insight into the molecular evolution that may explain the unchanged character of Latimeria morphology requires the analysis of the expression patterns of developmental regulator genes and their cis-regulatory modules (CRMs. Results We describe the comparative and functional analysis of the sonic hedgehog (shh genomic region of Latimeria menadoensis. Several putative enhancers in the Latimeria shh locus have been identified by comparisons to sarcopterygian and actinopterygian extant species. Specific sequence conservation with all known actinopterygian enhancer elements has been detected. However, these elements are selectively missing in more recently diverged actinopterygian and sarcopterygian species. The functionality of the putative Latimeria enhancers was confirmed by reporter gene expression analysis in transient transgenic zebrafish and chick embryos. Conclusions Latimeria shh CRMs represent the ancestral set of enhancers that have emerged before the split of lobe-finned and ray-finned fishes. In contrast to lineage-specific losses and differentiations in more derived lineages, Latimeria shh enhancers reveal low levels of sequence diversification. High overall sequence conservation of shh conserved noncoding elements (CNE is consistent with the general trend of high levels of conservation of noncoding DNA in the slowly evolving Latimeria genome.

  4. Mutational Studies on Resurrected Ancestral Proteins Reveal Conservation of Site-Specific Amino Acid Preferences throughout Evolutionary History

    Science.gov (United States)

    Risso, Valeria A.; Manssour-Triedo, Fadia; Delgado-Delgado, Asunción; Arco, Rocio; Barroso-delJesus, Alicia; Ingles-Prieto, Alvaro; Godoy-Ruiz, Raquel; Gavira, Jose A.; Gaucher, Eric A.; Ibarra-Molero, Beatriz; Sanchez-Ruiz, Jose M.

    2015-01-01

    Local protein interactions (“molecular context” effects) dictate amino acid replacements and can be described in terms of site-specific, energetic preferences for any different amino acid. It has been recently debated whether these preferences remain approximately constant during evolution or whether, due to coevolution of sites, they change strongly. Such research highlights an unresolved and fundamental issue with far-reaching implications for phylogenetic analysis and molecular evolution modeling. Here, we take advantage of the recent availability of phenotypically supported laboratory resurrections of Precambrian thioredoxins and β-lactamases to experimentally address the change of site-specific amino acid preferences over long geological timescales. Extensive mutational analyses support the notion that evolutionary adjustment to a new amino acid may occur, but to a large extent this is insufficient to erase the primitive preference for amino acid replacements. Generally, site-specific amino acid preferences appear to remain conserved throughout evolutionary history despite local sequence divergence. We show such preference conservation to be readily understandable in molecular terms and we provide crystallographic evidence for an intriguing structural-switch mechanism: Energetic preference for an ancestral amino acid in a modern protein can be linked to reorganization upon mutation to the ancestral local structure around the mutated site. Finally, we point out that site-specific preference conservation naturally leads to one plausible evolutionary explanation for the existence of intragenic global suppressor mutations. PMID:25392342

  5. South Pacific Nuclear Free Zone Treaty

    International Nuclear Information System (INIS)

    The full text of the South Pacific Nuclear Free Zone Treaty with its Annexes endorsed on 6 August 1985 by the South Pacific Forum (a body comprising the independent and self-governing countries of the South Pacific, namely Australia, the Cook Islands, Fiji, Kiribati, Nauru, New Zealand, Nive, Papua New Guinea, the Solomon Islands, Tonga, Tuvalu, Vanuatu and Western Samoa) is presented

  6. South Pacific Nuclear Free Zone Treaty

    International Nuclear Information System (INIS)

    On 6 August 1985 the South Pacific Forum, a body comprising the independent and self-governing countries of the South Pacific (Australia, the Cook Islands, Fiji, Kiribati, Nauru, New Zealand, Niue, Papua New Guinea, the Solomon Islands, Tonga, Tuvalu, Vanuatu and Western Samoa), endorsed the text of the South Pacific Nuclear Free Zone Treaty and opened it for signature

  7. Code breaking in the pacific

    CERN Document Server

    Donovan, Peter

    2014-01-01

    Covers the historical context and the evolution of the technically complex Allied Signals Intelligence (Sigint) activity against Japan from 1920 to 1945 Describes, explains and analyzes the code breaking techniques developed during the war in the Pacific Exposes the blunders (in code construction and use) made by the Japanese Navy that led to significant US Naval victories

  8. Proto-Pacific-margin source for the Ordovician turbidite submarine fan, Lachlan Orogen, southeast Australia: Geochemical constraints

    Science.gov (United States)

    Offler, R.; Fergusson, C. L.

    2016-04-01

    The Early Palaeozoic proto-Pacific Pacific margin of Gondwana was characterised by a huge turbidite submarine fan with abundant clastic detritus derived from unknown sources within Gondwana. These deposits are widespread in the Lachlan Orogen of southeast Australia and include the Ordovician Adaminaby Group. Here we show that the mudstones and sandstones of the Adaminaby Group have chemical compositions that indicate the detritus in them was derived from a felsic, continental source similar in composition to Post Archean Australian Shales (PAAS). Chondrite normalised REE patterns showing LREE enrichment, flat PAAS normalised patterns and elemental ratios La/Sc, Cr/Th, Cr/V, Th/Sc and Th/U, have been used to support this interpretation. The dominance of quartz, and to a lesser degree plagioclase and biotite in the sandstones, suggests that the source was mainly granodioritic to tonalitic in composition. Th/Yb and Ta/Yb ratios indicate that the source was probably calc-alkaline, continental and shoshonitic. In addition, the presence of detrital muscovite, low-grade metamorphic and felsic volcanic clasts, demonstrates that a low-grade metamorphic terrane and volcanic arc contributed to the detritus observed in the samples. The presence of well-rounded zircons and tourmalines, very high Zr contents, high Zr/Sc and higher Cr/V ratios in some samples particularly in the Shoalhaven River area, indicate that some of the detritus was recycled. SiO2 versus (Al2O3 + K2O + Na2O) plots suggest the source areas experienced conditions varying from humid/semi-humid to semi-arid. Textural features and weathering trends of samples from all locations follow a curved pathway on Al2O3 - (CaO* + Na2O) - K2O (ACNK) diagrams, and indicate that the clays formed from weathering had been K-metasomatised prior to penetrative deformation. Chemical indices of alteration (CIA) reveal that even the freshest sandstones are altered and others are moderately to strongly altered. Discrimination

  9. Detrital zircon SHRIMP U-Pb age study of the Cordillera Darwin Metamorphic Complex of Tierra del Fuego : sedimentary sources and implications for the evolution of the Pacific margin of Gondwana

    OpenAIRE

    Herve, F.; Fanning, C.M.; Pankhurst, R.J.; Mpodozis, C.; Klepeis, K.; Calderon, M.; S. N. Thomson

    2010-01-01

    The Cordillera Darwin Metamorphic Complex in the southernmost Andes includes a basement of probable Palaeozoic age, a mid-Jurassic and younger volcano-sedimentary cover, and a suite of Jurassic granites, all of which were jointly metamorphosed during the Cretaceous. Detrital zircon ages presented here show that some of the amphibolite-facies metamorphic rocks previously mapped as basement have a Jurassic protolith. Overall the detrital zircon age patterns for samples of the Cordillera Darwin ...

  10. On Cultural Perspective of Ancestral Hall Couplets in Sanming%三明宗祠楹联的文化透视

    Institute of Scientific and Technical Information of China (English)

    金文凯

    2012-01-01

    宗祠楹联是宋元以后宗族社会特有的一种艺术形式,是祠堂文化的典型产物。三明宗祠楹联文化蕴涵丰富。有的反映祠堂的祭祀功能;有的追祖溯源,崇仰故土祖根;有的表彰先贤,表达对先人的顶礼膜拜;有的则训勉后人,激励家族不断进取。它们在一定程度上记录着各家族的繁衍生息、荣衰变迁,为我们探知三明祠堂文化、了解三明宗族发展的历史以及研究三明历史文化名人等提供了珍贵的资料;同时,它们又以宗经明道、敦品立德为要旨,对促进社会和谐有序与可持续发展也具有重要意义,值得重视。%The ancestral hall couplet is a unique art form in clan society of the Song and Yuan dynasties,which is a typical product of the ancestral temple culture.The ancestral hall couplets in Sanming have rich cultural implications,such as reflecting the ritual function of the ancestral hall,recovering ancestral source,enshrining the homeland ancestral root,the recognition of the sages,the expression of pay homage to the ancestors,encouraging future generations and inspiring family to make progress.To a certain extent,they are a record of the development of each family as well as their changes in prosperity and decline,which provide valuable information for probing the ancestral hall culture in Sanming,understanding the history of ancestral hall couplets' development and studying the historical and cultural celebrities in Sanming.What's more,their following traditional ideas and regulating ethical conduct have important significance to promote harmonious society and sustainable development,which deserves attention.

  11. EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution

    Directory of Open Access Journals (Sweden)

    Liran Carmel

    2010-01-01

    Full Text Available Evolutionary binary characters are features of species or genes, indicating the absence (value zero or presence (value one of some property. Examples include eukaryotic gene architecture (the presence or absence of an intron in a particular locus, gene content, and morphological characters. In many studies, the acquisition of such binary characters is assumed to represent a rare evolutionary event, and consequently, their evolution is analyzed using various flavors of parsimony. However, when gain and loss of the character are not rare enough, a probabilistic analysis becomes essential. Here, we present a comprehensive probabilistic model to describe the evolution of binary characters on a bifurcating phylogenetic tree. A fast software tool, EREM, is provided, using maximum likelihood to estimate the parameters of the model and to reconstruct ancestral states (presence and absence in internal nodes and events (gain and loss events along branches.

  12. Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model

    DEFF Research Database (Denmark)

    Mailund, Thomas; Dutheil, Julien; Hobolth, Asger;

    2011-01-01

    ue to genetic variation in the ancestor of two populations or two species, the divergence time for DNA sequences from two populations is variable along the genome. Within genomic segments all bases will share the same divergence—because they share a most recent common ancestor—when no recombination...... event has occurred to split them apart. The size of these segments of constant divergence depends on the recombination rate, but also on the speciation time, the effective population size of the ancestral population, as well as demographic effects and selection. Thus, inference of these parameters may...... be possible if we can decode the divergence times along a genomic alignment. Here, we present a new hidden Markov model that infers the changing divergence (coalescence) times along the genome alignment using a coalescent framework, in order to estimate the speciation time, the recombination rate...

  13. ¿Con o sin ancestros? Vigencia de lo ancestral en la Amazonía peruana

    Directory of Open Access Journals (Sweden)

    Thomas Mouriès

    2014-07-01

    Full Text Available The existence —or not— of the concept of ancestors in the indigenous Amazon has been the subject of much debate. However, regional leaders do not hesitate to call upon ‘ancestral’ knowledge, customs, or territories in the sense that, from an academic point of view, could appear enigmatic. «Ancestral, but… with or without ancestors?» is the question a confused anthropologist might ask. In this article, I propose to offer elements of a response to this question,based on a case study in Peru. First I analyze how Amazonian indigenous leaders, following international law, have adopted the legal notion of ‘ancestral possession’ of their territory to adapt it to the political sphere. This approach accounts for the recent generalization and uniformization of the term ‘ancestral’, but poses the problem of how it articulates with the indigenous cosmologies that it supposes to reflect. For this reason, I explore in the second section the pertinence of the category of ‘ancestor’ in the indigenous Amazon, briefly drawing upon the academic debate in order to define inwhat way this category takes on meaning. Based on testimony from an experienced Awajún leader, we thus return in the third section more explicitly to the different meanings and planes of reference that unfold when one uses the term ‘ancestral’, showing how Amazonian indigenous people not only adopt external conceptual elements and arguments, but also transform them based on their own cosmological singularities and political perspectives.

  14. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories

    Science.gov (United States)

    Hanson-Smith, Victor; Johnson, Alexander

    2016-01-01

    The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1) reconstruct and “resurrect” (that is, synthesize in vivo or in vitro) extinct proteins to study how they differ from modern proteins, (2) identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3) order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above), or use our open-source code to launch their own PhyloBot server. PMID:27472806

  15. Cis-by-Trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene.

    Directory of Open Access Journals (Sweden)

    Shamoni Maheshwari

    Full Text Available The Dobzhansky and Muller (D-M model explains the evolution of hybrid incompatibility (HI through the interaction between lineage-specific derived alleles at two or more loci. In agreement with the expectation that HI results from functional divergence, many protein-coding genes that contribute to incompatibilities between species show signatures of adaptive evolution, including Lhr, which encodes a heterochromatin protein whose amino acid sequence has diverged extensively between Drosophila melanogaster and D. simulans by natural selection. The lethality of D. melanogaster/D. simulans F1 hybrid sons is rescued by removing D. simulans Lhr, but not D. melanogaster Lhr, suggesting that the lethal effect results from adaptive evolution in the D. simulans lineage. It has been proposed that adaptive protein divergence in Lhr reflects antagonistic coevolution with species-specific heterochromatin sequences and that defects in LHR protein localization cause hybrid lethality. Here we present surprising results that are inconsistent with this coding-sequence-based model. Using Lhr transgenes expressed under native conditions, we find no evidence that LHR localization differs between D. melanogaster and D. simulans, nor do we find evidence that it mislocalizes in their interspecific hybrids. Rather, we demonstrate that Lhr orthologs are differentially expressed in the hybrid background, with the levels of D. simulans Lhr double that of D. melanogaster Lhr. We further show that this asymmetric expression is caused by cis-by-trans regulatory divergence of Lhr. Therefore, the non-equivalent hybrid lethal effects of Lhr orthologs can be explained by asymmetric expression of a molecular function that is shared by both orthologs and thus was presumably inherited from the ancestral allele of Lhr. We present a model whereby hybrid lethality occurs by the interaction between evolutionarily ancestral and derived alleles.

  16. Low pathogenic avian influenza (H9N2) in chicken: Evaluation of an ancestral H9-MVA vaccine.

    Science.gov (United States)

    Ducatez, Mariette F; Becker, Jens; Freudenstein, Astrid; Delverdier, Maxence; Delpont, Mattias; Sutter, Gerd; Guérin, Jean-Luc; Volz, Asisa

    2016-06-30

    Modified Vaccinia Ankara (MVA) has proven its efficacy as a recombinant vector vaccine for numerous pathogens including influenza virus. The present study aimed at evaluating a recombinant MVA candidate vaccine against low pathogenic avian influenza virus subtype H9N2 in the chicken model. As the high genetic and antigenic diversity of H9N2 viruses increases vaccine design complexity, one strategy to widen the range of vaccine coverage is to use an ancestor sequence. We therefore generated a recombinant MVA encoding for the gene sequence of an ancestral hemagglutinin H9 protein (a computationally derived amino acid sequence of the node of the H9N2 G1 lineage strains was obtained using the ANCESCON program). We analyzed the genetics and the growth properties of the MVA vector virus confirming suitability for use under biosafety level 1 and tested its efficacy when applied either as an intra-muscular (IM) or an oral vaccine in specific pathogen free chickens challenged with A/chicken/Tunisia/12/2010(H9N2). Two control groups were studied in parallel (unvaccinated and inoculated birds; unvaccinated and non-inoculated birds). IM vaccinated birds seroconverted as early as four days post vaccination and neutralizing antibodies were detected against A/chicken/Tunisia/12/2010(H9N2) in all the birds before challenge. The role of local mucosal immunity is unclear here as no antibodies were detected in eye drop or aerosol vaccinated birds. Clinical signs were not detected in any of the infected birds even in absence of vaccination. Virus replication was observed in both vaccinated and unvaccinated chickens, suggesting the MVA-ancestral H9 vaccine may not stop virus spread in the field. However vaccinated birds showed less histological damage, fewer influenza-positive cells and shorter virus shedding than their unvaccinated counterparts. PMID:27259828

  17. Tectonics vs. eustasy: Mid Pennsylvanian carbonate-ramp cycles, ancestral Rocky Mountains, north-central New Mexico

    Energy Technology Data Exchange (ETDEWEB)

    Wiberg, T.L. (PRC Environmental Management, Inc., Chicago, IL (United States). Dept. of Geology); Smith, G.A. (Univ. of Mexico, Albuquerque, NM (United States). Dept. of Geology)

    1992-01-01

    Detailed stratigraphic and sedimentologic analysis of measured sections within the Madera Limestone in the Sandia Mountains, New Mexico, characterize depositional environments and transgressive-regressive (T-R) cycles across a west-dipping ramp, situated approximately 70 kilometers west of the Pedernal uplift, a tectonically active element of the Ancestral Rocky Mountains. The ramp setting was separated from the Pedernal Uplift by the deep, clastic-filled Estancia Basin. T-R cycles are 2--12 meters thick and consist of asymmetric, shoaling-upward calcareous shales, thick skeletal wackestones, packstones-grainstones, and are capped by subaerial exposure surfaces or terrigenous clastics. The presence of subaerial exposure features upon subtidal carbonates argues for an allogenic control on cycle formation. 15 T-R cycles are interpreted to coincide with 3rd-order eustatic curves of Ross and Ross (1987). Following the convention of most workers, these 3rd-order cycles are herein referred to as 4th-order. No higher-order cycles have been recognized. Cycles exhibit a bundling of 4, 4th-order cycles into larger, asymmetric 3rd-order cycles, similar in pattern to those described by Ross and Ross (1987). Correlation of Madera Limestone cycles with those in other regions indicates that ancestral Rocky Mountains tectonism was less effective than eustasy in controlling the stratigraphy of Middle Pennsylvanian sediments. Using various time scales for the Desmoinesian, cycle periodicities range between 200,000--370,000 years. This average cycle periodicity is similar to other 4th-order cycles reported in the literature for the Pennsylvanian and suggests a Milankovitch orbital forcing mechanism.

  18. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories.

    Science.gov (United States)

    Hanson-Smith, Victor; Johnson, Alexander

    2016-07-01

    The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1) reconstruct and "resurrect" (that is, synthesize in vivo or in vitro) extinct proteins to study how they differ from modern proteins, (2) identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3) order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above), or use our open-source code to launch their own PhyloBot server.

  19. Orangutan fish eating, primate aquatic fauna eating, and their implications for the origins of ancestral hominin fish eating.

    Science.gov (United States)

    Russon, Anne E; Compost, Alain; Kuncoro, Purwo; Ferisa, Agnes

    2014-12-01

    This paper presents new evidence of fish eating in rehabilitant orangutans living on two Bornean islands and explores its contributions to understanding nonhuman primates' aquatic fauna eating and the origins of ancestral hominin fish eating. We assessed the prevalence of orangutans' fish eating, their techniques for obtaining fish, and possible contributors (ecology, individual differences, humans). We identified 61 events in which orangutans tried to obtain fish, including 19 in which they ate fish. All the orangutans were juvenile-adolescent; all the fish were disabled catfish; and most were obtained and eaten in drier seasons in or near shallow, slow-moving water. Orangutans used several techniques to obtain fish (inadvertent, opportunistic and deliberate hand-catch, scrounge, tool-assisted catch) and probably learned them in that order. Probable contributing factors were orangutan traits (age, pre-existing water or tool skills), island features (social density, water accessibility), and local human fishing. Our review of primates' aquatic fauna eating showed orangutans to be one of 20 species that eat aquatic fauna, one of nine confirmed to eat fish, and one of three that use tools to obtain fish. Primate fish eating is also site-specific within species, partly as a function of habitat (e.g., marine-freshwater, seasonality) and human influence (possibly fostered eating fish or other aquatic fauna at most sites, clearly induced it at some). At tropical freshwater sites, fish eating occurred most often in drier seasons around shallow water. Orangutan and primate findings are generally consistent with Stewart's (2010) reconstruction of the origins of ancestral hominin fish eating, but suggest that it, and tool-assisted fish catching, were possible much earlier. PMID:25038033

  20. The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times

    Institute of Scientific and Technical Information of China (English)

    Konstantinos ANGELIS; Mario DOS REIS

    2015-01-01

    Although the effects of the coalescent process on sequence divergence and genealogies are well understood, the vir-tual majority of studies that use molecular sequences to estimate times of divergence among species have failed to account for the coalescent process. Here we study the impact of ancestral population size and incomplete lineage sorting on Bayesian estimates of species divergence times under the molecular clock when the inference model ignores the coalescent process. Using a combi-nation of mathematical analysis, computer simulations and analysis of real data, we find that the errors on estimates of times and the molecular rate can be substantial when ancestral populations are large and when there is substantial incomplete lineage sort-ing. For example, in a simple three-species case, we find that if the most precise fossil calibration is placed on the root of the phylogeny, the age of the internal node is overestimated, while if the most precise calibration is placed on the internal node, then the age of the root is underestimated. In both cases, the molecular rate is overestimated. Using simulations on a phylogeny of nine species, we show that substantial errors in time and rate estimates can be obtained even when dating ancient divergence events. We analyse the hominoid phylogeny and show that estimates of the neutral mutation rate obtained while ignoring the coalescent are too high. Using a coalescent-based technique to obtain geological times of divergence, we obtain estimates of the mutation rate that are within experimental estimates and we also obtain substantially older divergence times within the phylogeny [Current Zoology 61 (5): 874–885, 2015].

  1. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories.

    Science.gov (United States)

    Hanson-Smith, Victor; Johnson, Alexander

    2016-07-01

    The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1) reconstruct and "resurrect" (that is, synthesize in vivo or in vitro) extinct proteins to study how they differ from modern proteins, (2) identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3) order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above), or use our open-source code to launch their own PhyloBot server. PMID:27472806

  2. Comparative Study on the Electrical Properties of the Oceanic Mantle Beneath the Northwest Pacific Ocean

    Science.gov (United States)

    Toh, H.

    2013-12-01

    responses as well. It, however, should be also noted here that the penetration depth beneath Site WPB is significantly smaller than that beneath Site NWP because the solar activity has been very low since 2006. References Ichiki, M., K. Baba, H. Toh and K. Fuji-ta, An overview of electrical conductivity structures of the crust and upper mantle beneath the northwestern Pacific, the Japanese Islands, and continental East Asia, Gondwana Research, 16, 545?562, doi:10.1016/j.gr.2009.04.007, 2009. Salisbury MH et al (2006) 2. Leg 195 Synthesis: Site 1201?A geological and geophysical section in the West Philippine Basin from the 660-km discontinuity to the mudline. Proc. Ocean Drilling Program, Scientific Reports 195:27. Shipboard Scientific Party of ODP Leg 191 (2000) Northwest Pacific seismic observatory and hammer drill tests, Proc. Ocean Drilling Program, Initial Reports 191. Toh, H., Y. Hamano and M. Ichiki, Long-term seafloor geomagnetic station in the northwest Pacific: A possible candidate for a seafloor geomagnetic observatory, Earth Planets Space, 58, 697-705, 2006. Toh, H., Y. Hamano, M. Ichiki and H. Utada, Geomagnetic observatory operates at the seafloor in the Northwest Pacific Ocean, Eos, Trans. Am. Geophys. Union, 85, 467/473, DOI: 10.1029/2004EO450003, 2004.

  3. Septarian carbonate concretions in the Permian Rio do Rasto Formation: Birth, growth and implications for the early diagenetic history of southwestern Gondwana succession

    Science.gov (United States)

    Alessandretti, Luciano; Warren, Lucas Veríssimo; Machado, Rômulo; Novello, Valdir Felipe; Sayeg, Isaac Jamil

    2015-08-01

    Between the Late Carboniferous and Early Triassic, the southwestern Gondwana supercontinent was characterized by the development of a huge intracratonic basin. A large confined epeiric sea and the accumulation of a transgressive-regressive sequence were formed by continuous subsidence related to tectonic effects caused by the Sanrafaelic Orogeny and the consequent generation of accommodation space. The Permian Rio do Rasto Formation documents the last progradational cycle related to the complete continentalization of this epeiric sea. The basal member of the Rio do Rasto Formation (Serrinha) is believed to have been deposited in a shallow epicontinental water body subjected to storms and influenced by episodic deltaic incursions. One of the most remarkable characteristics of the Serrinha Member is the presence of carbonate concretions hosted in mudstones and very fine sandstones. Here, we combine sedimentological and petrographic descriptions coupled with geochemical and stable carbon and oxygen isotopic data to elucidate the nature of these carbonate concretions. The non-deformed internal structure, decreasing proportion of carbonate cements relative to detrital grains toward the concretion edges, core-to-rim isotopic variations, and perhaps most importantly, the preservation of a well-developed cardhouse fabric support an early diagenetic origin for these structures at shallow burial depths of tens of meters. Stable isotope analyses of micritic calcite cements and calcites filling the septarian fractures reveal major negative excursions in both δ18O and δ13C values. Oxygen isotope ratios obtained for the micritic calcite cements vary between - 12.1 and - 2.6‰. The calcite filling septarian fractures also exhibit negative values of δ18O (- 14.2 to - 13.8‰), with an average of - 14‰. The δ13C values of micritic calcite cements range from - 5.0-0.2‰. The carbon isotopic data from the calcite-filling septarian fractures are also negative (- 4.4 to - 3.3

  4. The Palu Metamorphic Complex, NW Sulawesi, Indonesia: Origin and evolution of a young metamorphic terrane with links to Gondwana and Sundaland

    Science.gov (United States)

    van Leeuwen, Theo; Allen, Charlotte M.; Elburg, Marlina; Massonne, Hans-Joachim; Palin, J. Michael; Hennig, Juliane

    2016-01-01

    The Palu Metamorphic Complex (PMC) is exposed in a late Cenozoic orogenic belt in NW Sulawesi, Indonesia. It is a composite terrane comprising a gneiss unit of Gondwana origin, a schist unit composed of meta-sediments deposited along the SE Sundaland margin in the Late Cretaceous and Early Tertiary, and one or more slivers of amphibolite with oceanic crust characteristics. The gneiss unit forms part of the West Sulawesi block underlying the northern and central sections of the Western Sulawesi Province. The presence of Late Triassic granitoids and recycled Proterozoic zircons in this unit combined with its isotopic signature suggests that the West Sulawesi block has its origin in the New Guinea margin from which it rifted in the late Mesozoic. It docked with Sundaland sometime during the Late Cretaceous. U-Th-Pb dating results for monazite suggest that another continental fragment may have collided with the Sundaland margin in the earliest Miocene. High-pressure (HP) and ultrahigh-pressure (UHP) rocks (granulite, peridotite, eclogite) are found as tectonic slices within the PMC, mostly along the Palu-Koro Fault Zone, a major strike-slip fault that cuts the complex. Mineralogical and textural features suggest that some of these rocks resided at depths of 60-120 km during a part of their histories. Thermochronological data (U-Th-Pb zircon and 40Ar/39Ar) from the metamorphic rocks indicate a latest Miocene to mid-Pliocene metamorphic event, which was accompanied by widespread granitoid magmatism and took place in an extensional tectonic setting. It caused recrystallization of, and new overgrowths on, pre-existing zircon crystals, and produced andalusite-cordierite-sillimanite-staurolite assemblages in pelitic protoliths, indicating HT-LP (Buchan-type) metamorphism. The PMC was exhumed as a core complex at moderate rates (c. 0.7-1.0 mm/yr) accompanied by rapid cooling in the Plio-Pleistocene. Some of the UHP rocks were transported to the surface at significantly higher

  5. P-T path and timing of crustal thickening during amalgamation of East and West Gondwana: A case study from the Hafafit Metamorphic Complex, Eastern Desert of Egypt

    Science.gov (United States)

    Abu El-Enen, Mahrous M.; Abu-Alam, Tamer S.; Whitehouse, Martin J.; Ali, Kamal A.; Okrusch, Martin

    2016-10-01

    The southeastern sector of the Hafafit Metamorphic Complex, southern Eastern Desert of Egypt comprises infrastructural orthogneisses of tonalite and syenogranite parentage, amphibolites, and a volcano-sedimentary association. These are overthrust by an obducted suprastructural ophiolite nappes via the Nugrus thrust. The protolith of the biotite-hornblende-gneisses was formed during island-arc accretion, while that of the garnet-biotite gneisses were formed in a within-plate regime, consistent with a transition to a post-collisional setting. The volcano-sedimentary association comprises interbedded and intercalated highly foliated metapelitic schists, metabasites, and leucocratic gneisses, deposited in a back-arc basin. The metapelites and the leucocratic gneisses originated from immature Fe-shales and arkoses derived from intermediate-mafic and acidic igneous rocks, respectively, via weak chemical weathering in a tectonically active island arc terrane. The intercalated amphibolites were derived from tholeiitic basalts generated in a back-arc setting. The volcano-sedimentary association was metamorphosed under upper-amphibolite facies conditions with pressures of 9-13 kbar and temperatures of 570-675 °C, as derived from conventional geothermobarometry and pseudosection calculation. A steep, tight clockwise P-T path is constrained and a geothermal gradient around 20 °C/km is estimated for the peak metamorphism. We assume that deformation and metamorphism are due to crustal thickening during the collision of East and West Gondwana, where peak metamorphism took place in the middle to lower crust at 33 km average crustal depth. This was followed by a subsequent quasi-isothermal decompression due to rapid exhumation during wrench tectonics. Sinistral transcurrent shearing with extensional denudation resulted in vertical ductile thinning that was accompanied by heat input from magmatism, as indicated by a higher geothermal gradient during retrograde metamorphism and

  6. Modelos de cinemática de placas para Antártida durante la ruptura de Gondwana: una revisión

    Directory of Open Access Journals (Sweden)

    M.E. Ghidella

    2007-12-01

    Full Text Available La historia de apertura del mar de Weddell y del Oc éano Atlántico Sur es crítica para comprender la ruptura de Gondwana y la evolución geológica de Antártida desde el Jurásico temprano. La dispersión de los fragmentos gondwánicos es importante para entender la circulación oceánica del pasado, descifrar la historia de las cuencas sedimentarias ubicadas al Este de la Península Antártica y establecer posibles rutas de dispersión de flora y fauna entre los continentes australes. Desafortunadamente, la tectónica del mar de Weddell es difícil de resolver debido a la escasez de datos y a su inherente complejidad. Aunque se ha alcanzado un progreso muy grande el los últimos 20 años, con nuevos datos aeromagnéticos marinos y mapas de gravedad derivada de altimetría satelital, todavía hay varios modelos en consideración que difieren en edades corticales y esquemas de apertura. En este trabajo se presenta una revisión de cuatro de esos modelos. Utilizando polos de rotación, isócronas sintéticas y líneas de flujo, se ha procedido hacia atrás en el tiempo comenzando en la anomalía magnética 34 (83,5 millones de años, porque la misma está relativamente bien definida en los océanos, y se presentan mapas de edades de corteza que muestran la trayectoria estimada del punto triple Sudamérica - Antártida - África para cada modelo. Asimismo se muestran gráficos de las reconstrucciones en cuatro épocas elegidas para todos los modelos usando la misma proyección y escala para facilitar la comparación. La variedad de suposiciones simplificadoras que debieron hacerse en cada modelo, recurriendo a fragmentación de placas para considerar las numerosas cuencas de syn-rift y períodos de extensión, son fuertes indicadores de que la tectónica de placas rígidas es un modelo demasiado simple para el presente problema.

  7. Infectious diseases of Pacific salmon

    Science.gov (United States)

    1954-01-01

    Investigations on infectious diseases of Pacific salmon due to micro-organisms other than viruses are reviewed. The etiological agents include trematodes, fungi, protozoa and bacteria. Bacteria have been found to be the most important agents of disease in the several species of Pacific salmon. Kidney disease, due to a small, unnamed Gram-positive diplobacillus, causes serious mortalities in young salmon reared in hatcheries. The disease has also been found in wild fish. Aquatic myxobacteria are important agents of disease both in the hatchery and in the natural habitat. One of the myxobacteria, Chondrococcus columnaris, causes disease at relatively high water temperatures. The problem of the taxonomy of this organism is discussed. Another myxobacterium, Cytophaga psychrophila, has been found responsible for epizootics in coho salmon at lower water temperatures, i.e., in the range of 40° to 55° F. In outbreaks of gill disease in young salmon, myxobacteria of several kinds have been implicated.

  8. Measuring Poverty in the Pacific

    OpenAIRE

    Matthew Morris

    2011-01-01

    Measuring poverty in the Pacific is important to keep poor people on the policy agenda, to design effective policies and programs and to carry out rigorous evaluation so that we know what works and why. There are various definitions of poverty, ranging from a narrow focus on adequate calorie consumption through to broader concepts of capabilities. This paper takes a practical look at how to measure one conventional indicator of poverty: income (or consumption) poverty. In doing so, the paper ...

  9. The Importance of the Pacific

    Directory of Open Access Journals (Sweden)

    Manuel Montobbio

    1995-01-01

    Full Text Available Asia has now woken up. Its huge economic development is proof of this. The Asian-Pacific nations have known how to adopt Western means of production and have incorporated them into their own culture and tradition. However, this does not mean that they are not undergoing profound transformations both at a domestic and external level, as can be highlighted, with regard to the latter, by the desire to establish a new order in the Asia-Pacific region. In this context, the present article analyses whether this dynamic presents a reformation of the world order: the fundamental role that the US plays in this region after the Cold War; the new actors and power relations that are emerging such as Japan, China and ASEAN (Association of South East Nations; and forums such as APEC (AsiaPacific Economic Cooperation, EAEC (East Asian Economic Conference, ASEAN and the ASEAN Security Forum, created and empowered among other things in order to keep a check on the reappearance of those old “ghosts” (nationalisms, territorial disputes pending solution which could triumph over the growing prosperity.Finally, the author draws to attention the Europe of the EU which is too busy in its own self-construction and puts before it the challenge of knowing how to shape itself into the third great actor of the region, after the U.S. and Japan and he speaks of the necessityfor Spain to be more present in the Pacific given that it is vital for its economy.

  10. Pacific Northwest regional assessment program

    International Nuclear Information System (INIS)

    The Pacific Northwest (comprised of the states of Alaska, Idaho, Montana, Oregon, Washington and Wyoming) can by several measures be regarded as a national warehouse of fossil energy resources. This condition coupled with an evolving national policy stressing utilization of fossil fuels in the near term prior to development of more advanced technologies for energy supply, could result in the imposition of major changes in the region's environmental, socioeconomic and possibly health status. The objective of the Pacific Northwest Regional Assessment Program is to establish and exercise an integrated analytical assessment program for evaluation of these potential changes that may result from various energy development or conservation scenarios. After consideration of a variety of approaches to integrated assessment at a regional level, Pacific Northwest Laboratories (PNL) has concluded that dynamic simulation techniques provide the best available approach to evaluating the issues pertinent to the Northwest. As a result, the PNW Regional Assessment Program has been structured in a framework involving ten sectors. Each of these sectors involve their own submodels that receive information either from outside the model as exogenous inputs or from other sector submodels

  11. Central Equatorial Pacific Experiment (CEPEX)

    Energy Technology Data Exchange (ETDEWEB)

    1993-01-01

    The Earth's climate has varied significantly in the past, yet climate records reveal that in the tropics, sea surface temperatures seem to have been remarkably stable, varying by less than a few degrees Celsius over geologic time. Today, the large warm pool of the western Pacific shows similar characteristics. Its surface temperature always exceeds 27[degree]C, but never 31[degree]C. Heightened interest in this observation has been stimulated by questions of global climate change and the exploration of stabilizing climate feedback processes. Efforts to understand the observed weak sensitivity of tropical sea surface temperatures to climate forcing has led to a number of competing ideas about the nature of this apparent thermostat. Although there remains disagreement on the processes that regulate tropical sea surface temperature, most agree that further progress in resolving these differences requires comprehensive field observations of three-dimensional water vapor concentrations, solar and infrared radiative fluxes, surface fluxes of heat and water vapor, and cloud microphysical properties. This document describes the Central Equatorial Pacific Experiment (CEPEX) plan to collect such observations over the central equatorial Pacific Ocean during March of 1993.

  12. Complete tribal sampling reveals basal split in Muscidae (Diptera), confirms saprophagy as ancestral feeding mode, and reveals an evolutionary correlation between instar numbers and carnivory

    DEFF Research Database (Denmark)

    Kutty, Sujatha Narayanan; Pont, Adrian C.; Meier, Rudolf;

    2014-01-01

    of the number of larval instars from three (ancestral) to two and one. The genus Achanthiptera which was previously in its own subfamily is shown to be closely related to Azeliini. However, it appears that Azeliinae is paraphyletic because Muscinae is sister-group to the Azeliini while the azeliine...

  13. Broadening the New Perspective on Paul : Paul and the Ethnographical Debate of his Time - The Criticism of Jewish and Pagan Ancestral Customs (1 Thess 2:13-16)

    NARCIS (Netherlands)

    van Kooten, G.H.; van Kooten, G.H.; Goodman, M.; van Ruiten, J.T.A.G.M.

    2010-01-01

    George H. van Kooten, “Broadening the New Perspective on Paul: Paul and the Ethnographical Debate of His Time—The Criticism of Jewish and Pagan Ancestral Customs (1 Thess 2:13-16),” in Abraham, the Nations, and the Hagarites: Jewish, Christian, and Islamic Perspectives on Kinship with Abraham (ed. M

  14. Pacific Hake - Growth and natal origin of Pacific hake from the Georgia Basin DPS

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Pacific hake (Merluccius productus) is an abundant species residing along the Pacific coast from the Gulf of California to the Strait of Georgia. It is the most...

  15. Biological data - Integrated acoustic and trawl survey of Pacific hake off the Pacific Coast

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Integrated acoustic and trawl surveys are used to assess the distribution, biomass, and biology of Pacific hake along the Pacific coasts of the United States and...

  16. Acoustic data - Integrated acoustic and trawl survey of Pacific hake off the Pacific Coast

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Integrated acoustic and trawl surveys are used to assess the distribution, biomass, and biology of Pacific hake along the Pacific coasts of the United States and...

  17. Climate Prediction Center (CPC) East Pacific/ North Pacific Teleconnection Pattern Index

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Monthly tabulated index of the East Pacific/ North Pacific teleconnection pattern. The data spans the period 1950 to present. The index is derived from a rotated...

  18. Oceanographic data - Integrated acoustic and trawl survey of Pacific hake off the Pacific Coast

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Integrated acoustic and trawl surveys are used to assess the distribution, biomass, and biology of Pacific hake along the Pacific coasts of the United States and...

  19. Summary Report: Asian Pacific Islander Workers Hearing

    OpenAIRE

    Asian Pacific American Labor Alliance; AFL-CIO; UCLA Labor Center

    2002-01-01

    The first ever California State Assembly Hearing on Asian Pacific Islander Workers was convened by the Labor Employment Committee and the Asian Pacific Islander Legislative Caucus, at the request of Assembly member Judy Chu. The Hearing brought together Asian Pacific Islander workers and advocates from all over California. Their stories are a snapshot of millions of workers. The testimonies gave a glimpse of the detrimental impact that worker exploitation has on families and communities. Most...

  20. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    APJTB Monthly Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding,preventing and controlling the dramatic global emergence and reemergence of infectious diseases in the Asian Pacific region.

  1. South Pacific Nuclear Free Zone Treaty

    International Nuclear Information System (INIS)

    On 8 August 1986 the Protocols to the South Pacific Nuclear Free Zone Treaty were adopted by the South Pacific Forum at its 17th session, in Suva. The attached texts of the Protocols were formally communicated to the Director General by the Director of the South Pacific Bureau for Economic Co-operation (SPEC) and are herewith being circulated to all Member States for their information pursuant to a request made by the Director of SPEC. Following the deposit of the eighth instrument of ratification, the South Pacific Nuclear Free Zone Treaty entered into force on 11 December 1986

  2. The ancestral cascades arc: Cenozoic evolution of the central Sierra Nevada (California) and the birth of the new plate boundary

    Science.gov (United States)

    Busby, C.J.; Hagan, J.C.; Putirka, K.; Pluhar, C.J.; Gans, P.B.; Wagner, D.L.; Rood, D.; DeOreo, S.B.; Skilling, I.

    2008-01-01

    We integrate new stratigraphic, structural, geochemical, geochronological, and magnetostratigraphic data on Cenozoic volcanic rocks in the central Sierra Nevada to arrive at closely inter-related new models for: (1) the paleogeography of the ancestral Cascades arc, (2) the stratigraphic record of uplift events in the Sierra Nevada, (3) the tectonic controls on volcanic styles and compositions in the arc, and (4) the birth of a new plate margin. Previous workers have assumed that the ancestral Cascades arc consisted of stratovolcanoes, similar to the modern Cascades arc, but we suggest that the arc was composed largely of numerous, very small centers, where magmas frequently leaked up strands of the Sierran frontal fault zone. These small centers erupted to produce andesite lava domes that collapsed to produce block-and-ash flows, which were reworked into paleocanyons as volcanic debris flows and streamflow deposits. Where intrusions rose up through water-saturated paleocanyon fill, they formed peperite complexes that were commonly destabilized to form debris flows. Paleocanyons that were cut into Cretaceous bedrock and filled with Oligocene to late Miocene strata not only provide a stratigraphic record of the ancestral Cascades arc volcanism, but also deep unconformities within them record tectonic events. Preliminary correlation of newly mapped unconformities and new geochronological, magnetostratigraphic, and structural data allow us to propose three episodes of Cenozoic uplift that may correspond to (1) early Miocene onset of arc magmatism (ca. 15 Ma), (2) middle Miocene onset of Basin and Range faulting (ca. 10 Ma), and (3) late Miocene arrival of the triple junction (ca. 6 Ma), perhaps coinciding with a second episode of rapid extension on the range front. Oligocene ignimbrites, which erupted from calderas in central Nevada and filled Sierran paleocanyons, were deeply eroded during the early Miocene uplift event. The middle Miocene event is recorded by growth

  3. Blood types in Pacific salmon

    Science.gov (United States)

    Ridgway, G.L.; Klontz, G.W.

    1961-01-01

    Intraspecific differences in erythrocyte antigens (blood types) were shown to occur in four species of Pacific salmon, the sockeye or red salmon (Oncorhynchus nerka), the chinook or king salmon (0. tshawytscha), the chum salmon (O. keta), and the pink salmon (O. gorbuscha). Antisalmon-erythrocyte sera prepared in rabbits and chickens were used after absorption of species-specific antibodies. Some of these blood types were shown to differ in their frequency of occurrence between different geographic races. In addition, isoimmunizations were conducted on one race of sockeye salmon. Antisera of seven different specificities were prepared and at least eight different patterns of antigenic composition were displayed by the cells tested.

  4. Pacific Northwest Resources Inventory Demonstration

    Science.gov (United States)

    Nichols, J. D.

    1976-01-01

    The Pacific Northwest Land Resource Inventory Demonstration project is designed to demonstrate to users from state and local agencies in Washington, Oregon, and Idaho the cost effective role that Landsat derived information can play in natural resource planning and management when properly supported by ground and aircraft data. The project has been organized into five main phases: (1) maps and overlays, (2) early digital image analysis, (3) demonstration of applications using interactive image analysis, (4) Landsat products and land resources information systems, and (5) documentation. The demonstration project has been applied to Washington forestry, water inventory in southern Idaho, and monitoring of tansy ragwort in western Oregon.

  5. Tectonic Evolution of the Jurassic Pacific Plate

    Science.gov (United States)

    Nakanishi, M.; Ishihara, T.

    2015-12-01

    We present the tectonic evolution of the Jurassic Pacific plate based on magnetic anomly lineations and abyssal hills. The Pacific plate is the largest oceanic plate on Earth. It was born as a microplate aroud the Izanagi-Farallon-Phoenix triple junction about 192 Ma, Early Jurassic [Nakanishi et al., 1992]. The size of the Pacific plate at 190 Ma was nearly half that of the present Easter or Juan Fernandez microplates in the East Pacific Rise [Martinez et at, 1991; Larson et al., 1992]. The plate boundary surrounding the Pacific plate from Early Jurassic to Early Cretaceous involved the four triple junctions among Pacific, Izanagi, Farallon, and Phoenix plates. The major tectonic events as the formation of oceanic plateaus and microplates during the period occurred in the vicinity of the triple junctions [e.g., Nakanishi and Winterer, 1998; Nakanishi et al., 1999], implying that the study of the triple junctions is indispensable for understanding the tectonic evolution of the Pacific plate. Previous studies indicate instability of the configuration of the triple junctions from Late Jurassic to Early Cretaceous (155-125 Ma). On the other hand, the age of the birth of the Pacific plate was determined assuming that all triple junctions had kept their configurations for about 30 m.y. [Nakanishi et al., 1992] because of insufficient information of the tectonic history of the Pacific plate before Late Jurassic.Increase in the bathymetric and geomagnetic data over the past two decades enables us to reveal the tectonic evolution of the Pacific-Izanagi-Farallon triple junction before Late Jurassic. Our detailed identication of magnetic anomaly lineations exposes magnetic bights before anomaly M25. We found the curved abyssal hills originated near the triple junction, which trend is parallel to magnetic anomaly lineations. These results imply that the configuration of the Pacific-Izanagi-Farallon triple junction had been RRR before Late Jurassic.

  6. Sedimentological and sequence stratigraphic analysis of Carboniferous deposits in western Libya: Recording the sedimentary response of the northern Gondwana margin to climate and sea-level changes

    Science.gov (United States)

    Fröhlich, Sebastian; Petitpierre, Laurent; Redfern, Jonathan; Grech, Paul; Bodin, Stéphane; Lang, Simon

    2010-06-01

    Detailed sedimentological and sequence stratigraphic analysis of Carboniferous (Tournaisian to Moscovian) strata exposed in the north-western Murzuq Basin and southern Ghadames Basin, western Libya, provides new insights into the sedimentary response of the northern Gondwana margin to climate and sea-level change. The Lower Carboniferous Marar and Assedjefar Formations can be divided into five depositional sequences of 3rd order. In total 27 facies types are defined, grouped into four facies associations: offshore shales, shallow marine clastics, fluvial sandstones and marine carbonates. The bulk of the Lower Carboniferous interval is dominated by an alternation of offshore shales and shallow marine clastics, which were deposited during the transgressive and highstand systems tracts. The clastic deposits mostly consist of laterally persistent coarsening and thickening upward cycles with a common succession from basal hummocky cross-stratified sandstones to ripple-laminated sandstones, capped by multidirectional cross-stratified sandstones. Within the lowstand systems tracts, lenticular sandbodies have been identified, which vary in thickness from 1.5 m (ca. 40 m wide) to 50 m (ca. 1.5 km wide). These are interpreted to be fluvial channel complexes based on their geometry, erosive base, and presence of thick stacked sandstones with unidirectional planar and trough cross-bedding, the absence of bioturbation and occurrence of land plant fragments. These channel complexes mostly cut down into offshore shales, and are interpreted to be bound at the base by sequence boundaries. Palaeogeographic maps generated for each lowstand system show the location and palaeoflow direction of these fluvial channel complexes. They are interpreted to represent large incised valleys filled with thick fluvial sandstones. Their identification and distribution indicates repeated exposure of large areas of western Libya, most-likely controlled by major eustatic sea-level changes. The

  7. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>APJTB Monthly Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public

  8. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    Aims & Scope Asian Pacific Journal of TropicalBiomedicine(APJTB) aims to set up and provide an international academic communication plaffom for physicians,medical scientisis,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges

  9. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding

  10. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    APJTB MonthlyAims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges

  11. Diabetes and Asians and Pacific Islanders

    Science.gov (United States)

    ... diabetes per 100 population (2014) Asian American White Asian American/White Ratio Men 5.8 6.3 0.9 Women 5.7 5.3 1.1 Total 5.8 5.7 1.0 Source: CDC 2016. National Diabetes Surveillance ... Asian American/Pacific Islanders Non-Hispanic White Asian American/Pacific ...

  12. Atmospheric science: Pacific trade wind intensifier

    Science.gov (United States)

    Collier, Mark

    2016-08-01

    The unprecedented recent intensification of the Pacific trade winds cannot simply be explained by natural variability alone. Now research finds that the more local influence of sulfate aerosols of human and volcanic origin play a significant role, in addition to the Pacific's coupling to the Atlantic Ocean via the 'atmospheric bridge'.

  13. Expression of segment polarity genes in brachiopods supports a non-segmental ancestral role of engrailed for bilaterians.

    Science.gov (United States)

    Vellutini, Bruno C; Hejnol, Andreas

    2016-01-01

    The diverse and complex developmental mechanisms of segmentation have been more thoroughly studied in arthropods, vertebrates and annelids-distantly related animals considered to be segmented. Far less is known about the role of "segmentation genes" in organisms that lack a segmented body. Here we investigate the expression of the arthropod segment polarity genes engrailed, wnt1 and hedgehog in the development of brachiopods-marine invertebrates without a subdivided trunk but closely related to the segmented annelids. We found that a stripe of engrailed expression demarcates the ectodermal boundary that delimits the anterior region of Terebratalia transversa and Novocrania anomala embryos. In T. transversa, this engrailed domain is abutted by a stripe of wnt1 expression in a pattern similar to the parasegment boundaries of insects-except for the expression of hedgehog, which is restricted to endodermal tissues of the brachiopod embryos. We found that pax6 and pax2/5/8, putative regulators of engrailed, also demarcate the anterior boundary in the two species, indicating these genes might be involved in the anterior patterning of brachiopod larvae. In a comparative phylogenetic context, these findings suggest that bilaterians might share an ancestral, non-segmental domain of engrailed expression during early embryogenesis. PMID:27561213

  14. Natural environments, ancestral diets, and microbial ecology: is there a modern "paleo-deficit disorder"? Part II.

    Science.gov (United States)

    Logan, Alan C; Katzman, Martin A; Balanzá-Martínez, Vicent

    2015-01-01

    Famed microbiologist René J. Dubos (1901-1982) was an early pioneer in the developmental origins of health and disease (DOHaD) construct. In the 1960s, he conducted groundbreaking research concerning the ways in which early-life experience with nutrition, microbiota, stress, and other environmental variables could influence later-life health outcomes. He recognized the co-evolutionary relationship between microbiota and the human host. Almost 2 decades before the hygiene hypothesis, he suggested that children in developed nations were becoming too sanitized (vs. our ancestral past) and that scientists should determine whether the childhood environment should be "dirtied up in a controlled manner." He also argued that oft-celebrated growth chart increases via changes in the global food supply and dietary patterns should not be equated to quality of life and mental health. Here in the second part of our review, we reflect the words of Dubos off contemporary research findings in the areas of diet, the gut-brain-axis (microbiota and anxiety and depression) and microbial ecology. Finally, we argue, as Dubos did 40 years ago, that researchers should more closely examine the relevancy of silo-sequestered, reductionist findings in the larger picture of human quality of life. In the context of global climate change and the epidemiological transition, an allergy epidemic and psychosocial stress, our review suggests that discussions of natural environments, urbanization, biodiversity, microbiota, nutrition, and mental health, are often one in the same. PMID:25889196

  15. Ancestral association between HLA and HFE H63D and C282Y gene mutations from northwest Colombia

    Directory of Open Access Journals (Sweden)

    Libia M Rodriguez

    2015-03-01

    Full Text Available A significant association between HFE gene mutations and the HLA-A*03-B*07 and HLA-A*29-B*44 haplotypes has been reported in the Spanish population. It has been proposed that these mutations are probably connected with Celtic and North African ancestry, respectively. We aimed to find the possible ancestral association between HLA alleles and haplotypes associated with the HFE gene (C282Y and H63D mutations in 214 subjects from Antioquia, Colombia. These were 18 individuals with presumed hereditary hemochromatosis (“HH” and 196 controls. The HLA-B*07 allele was in linkage disequilibrium (LD with C282Y, while HLA-A*23, A*29, HLA-B*44, and B*49 were in LD with H63D. Altogether, our results show that, although the H63D mutation is more common in the Antioquia population, it is not associated with any particular HLA haplotype, whereas the C282Y mutation is associated with HLA-A*03-B*07, this supporting a northern Spaniard ancestry.

  16. Food-Nonfood Discrimination in Ancestral Vertebrates: Gamete Cannibalism and the Origin of the Adaptive Immune System.

    Science.gov (United States)

    Corcos, D

    2015-11-01

    Adaptive immunity is a complex system that appeared twice in vertebrates (in gnathostomes and in jawless fish) although it is not required for invertebrate defence. The adaptive immune system is tightly associated with self-non-self discrimination, and it is now clear that this interplay is not limited to the prevention of autoreactivity. Micro-organisms are usually considered for their pathogenicity or symbiotic ability, but, for most small metazoans, they mainly constitute food. Vertebrates are characterized by feeding by predation on larger preys, when compared to their ancestors who were filter feeders and ate micro-organisms. Predation gives a strong selective advantage, not only due to the availability of new food resources but also by the ability to eliminate competitors for environmental resources (intraguild predation (IGP)). Unlike size-structured IGP, intraspecific predation of juveniles, zygotes or gametes can be detrimental for species fitness in some circumstances. The ability of individuals to recognize highly polymorphic molecules on the surface of gametes present in the plankton and so distinguish self versus non-self gametes might have constituted a strong selective advantage in intraspecific competition. Here, I propose the theory that the capacity to rearrange receptors has been selected in ancestral vertebrates as a consequence of this strong need for discriminating between hetero-cannibalism versus filial cannibalism. This evolutionary origin sheds light on presently unexplained features of the immune system, including the existence of regulatory T cells and of non-pathogenic natural autoimmunity. PMID:26286030

  17. Basin and range-age reactivation of the ancestral Rocky Mountains in Texas Panhandle: evidence from Ogallala Formation

    Energy Technology Data Exchange (ETDEWEB)

    Budnik, R.T.

    1984-04-01

    The Ogallala Formation (Neogene) is a widespread syntectonic alluvial apron that was shed eastward from the Rio Grande rift and related uplifts in Colorado and New Mexico during Basin and Range extension. In the Texas Panhandle, the Ogallala completely buried Ancestral Rocky Mountain (Pennsylvanian) structures. Renewed movement on these older structures during the Neogene influenced the thickness and facies distribution of the Ogallala. The Ogallala thickens into the Palo Duro, Dalhart, and Anadarko basins. Major distributary channels on Ogallala alluvial fans coincide with the axes of these basins, whereas major interchannel areas overlie intervening uplifts. Second-order structures subtly influenced the unit as well. For example, the Carson basin, a Pennsylvanian rhomb graben along the Amarillo uplift, the Ogallala is over 250 m (820 ft) thick compared with 90 m (275 ft) in adjacent areas. Within the Palo Duro basin, local highs controlled the distribution of thin, interchannel flood-basin and lacustrine deposits. Thicker, braided-stream channel deposits follow local lows. Later movement on the Amarillo uplift broadly folded the Ogallala. The southern high plains surface subtly reflects basement structure, with topographic highs overlying basement highs, suggesting post-Ogallala deformation within the Palo Duro basin. The Amarillo uplift is approximately perpendicular to the Rio Grande rift and parallel to the direction of Basin and Range extension. Thus, the stress field that produced the rift may have caused strike-slip movement and reactivation of the Carson basin along the Amarillo uplift.

  18. Natural environments, ancestral diets, and microbial ecology: is there a modern "paleo-deficit disorder"? Part II.

    Science.gov (United States)

    Logan, Alan C; Katzman, Martin A; Balanzá-Martínez, Vicent

    2015-03-10

    Famed microbiologist René J. Dubos (1901-1982) was an early pioneer in the developmental origins of health and disease (DOHaD) construct. In the 1960s, he conducted groundbreaking research concerning the ways in which early-life experience with nutrition, microbiota, stress, and other environmental variables could influence later-life health outcomes. He recognized the co-evolutionary relationship between microbiota and the human host. Almost 2 decades before the hygiene hypothesis, he suggested that children in developed nations were becoming too sanitized (vs. our ancestral past) and that scientists should determine whether the childhood environment should be "dirtied up in a controlled manner." He also argued that oft-celebrated growth chart increases via changes in the global food supply and dietary patterns should not be equated to quality of life and mental health. Here in the second part of our review, we reflect the words of Dubos off contemporary research findings in the areas of diet, the gut-brain-axis (microbiota and anxiety and depression) and microbial ecology. Finally, we argue, as Dubos did 40 years ago, that researchers should more closely examine the relevancy of silo-sequestered, reductionist findings in the larger picture of human quality of life. In the context of global climate change and the epidemiological transition, an allergy epidemic and psychosocial stress, our review suggests that discussions of natural environments, urbanization, biodiversity, microbiota, nutrition, and mental health, are often one in the same.

  19. Hox Proteins Display a Common and Ancestral Ability to Diversify Their Interaction Mode with the PBC Class Cofactors

    Science.gov (United States)

    Hudry, Bruno; Remacle, Sophie; Delfini, Marie-Claire; Rezsohazy, René; Graba, Yacine; Merabet, Samir

    2012-01-01

    Hox transcription factors control a number of developmental processes with the help of the PBC class proteins. In vitro analyses have established that the formation of Hox/PBC complexes relies on a short conserved Hox protein motif called the hexapeptide (HX). This paradigm is at the basis of the vast majority of experimental approaches dedicated to the study of Hox protein function. Here we questioned the unique and general use of the HX for PBC recruitment by using the Bimolecular Fluorescence Complementation (BiFC) assay. This method allows analyzing Hox-PBC interactions in vivo and at a genome-wide scale. We found that the HX is dispensable for PBC recruitment in the majority of investigated Drosophila and mouse Hox proteins. We showed that HX-independent interaction modes are uncovered by the presence of Meis class cofactors, a property which was also observed with Hox proteins of the cnidarian sea anemone Nematostella vectensis. Finally, we revealed that paralog-specific motifs convey major PBC-recruiting functions in Drosophila Hox proteins. Altogether, our results highlight that flexibility in Hox-PBC interactions is an ancestral and evolutionary conserved character, which has strong implications for the understanding of Hox protein functions during normal development and pathologic processes. PMID:22745600

  20. Hox proteins display a common and ancestral ability to diversify their interaction mode with the PBC class cofactors.

    Directory of Open Access Journals (Sweden)

    Bruno Hudry

    Full Text Available Hox transcription factors control a number of developmental processes with the help of the PBC class proteins. In vitro analyses have established that the formation of Hox/PBC complexes relies on a short conserved Hox protein motif called the hexapeptide (HX. This paradigm is at the basis of the vast majority of experimental approaches dedicated to the study of Hox protein function. Here we questioned the unique and general use of the HX for PBC recruitment by using the Bimolecular Fluorescence Complementation (BiFC assay. This method allows analyzing Hox-PBC interactions in vivo and at a genome-wide scale. We found that the HX is dispensable for PBC recruitment in the majority of investigated Drosophila and mouse Hox proteins. We showed that HX-independent interaction modes are uncovered by the presence of Meis class cofactors, a property which was also observed with Hox proteins of the cnidarian sea anemone Nematostella vectensis. Finally, we revealed that paralog-specific motifs convey major PBC-recruiting functions in Drosophila Hox proteins. Altogether, our results highlight that flexibility in Hox-PBC interactions is an ancestral and evolutionary conserved character, which has strong implications for the understanding of Hox protein functions during normal development and pathologic processes.

  1. Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

    Directory of Open Access Journals (Sweden)

    Shigeki Nakagome

    Full Text Available Recent studies have reported discordant gene trees in the evolution of brown bears and polar bears. Genealogical histories are different among independent nuclear loci and between biparentally inherited autosomal DNA (aDNA and matrilineal mitochondrial DNA (mtDNA. Based on multi-locus genomic sequences from aDNA and mtDNA, we inferred the population demography of brown and polar bears and found that brown bears have 6 times (aDNA or more than 14 times (mtDNA larger population sizes than polar bears and that polar bear lineage is derived from within brown bear diversity. In brown bears, the effective population size ratio of mtDNA to aDNA was at least 0.62, which deviated from the expected value of 0.25, suggesting matriarchal population due to female philopatry and male-biased migration. These results emphasize that ancestral polymorphisms and sex-biased migration may have contributed to conflicting branching patterns in brown and polar bears across aDNA genes and mtDNA.

  2. Natural epigenetic protection against the I-factor, a Drosophila LINE retrotransposon, by remnants of ancestral invasions.

    Science.gov (United States)

    Dramard, Xavier; Heidmann, Thierry; Jensen, Silke

    2007-03-21

    Transposable elements are major components of most eukaryotic genomes. Such sequences are generally defective for transposition and have little or no coding capacity. Because transposition can be highly mutagenic, mobile elements that remain functional are tightly repressed in all living species. Drosophila pericentromeric heterochromatin naturally contains transposition-defective, non-coding derivatives of a LINE retrotransposon related to the I-factor. The I-factor is a good model to study the regulation of transposition in vivo because, under specific conditions, current functional copies of this mobile element can transpose at high frequency, specifically in female germ cells, with deleterious effects including female sterility. However, this high transpositional activity becomes spontaneously repressed upon ageing or heat treatment, by a maternally transmitted, transgenerational epigenetic mechanism of unknown nature. We have analyzed, by quantitative real time RT-PCR, the RNA profile of the transposition-defective I-related sequences, in the Drosophila ovary during ageing and upon heat treatment, and also in female somatic tissues and in males, which are not permissive for I-factor transposition. We found evidence for a role of transcripts from these ancestral remnants in the natural epigenetic protection of the Drosophila melanogaster genome against the deleterious effects of new invasions by functional I-factors. These results provide a molecular basis for a probably widespread natural protection against transposable elements by persisting vestiges of ancient invasions.

  3. Petrología y geoquímica de los granitoides peralumínicos de la Faja TIPA, en el borde occidental de Gondwana, sistema de Famatina, Argentina

    Directory of Open Access Journals (Sweden)

    Toselli, A. J.

    1996-08-01

    Full Text Available Main pretrological and geochemistry characteristics of the rocks of Copacabana, Paimán and Velasco Ranges are shown, constituent of the important deformative structure developed in the east border of Famatinian System. This structure is relationed with Ocloyic-Taconic Collision between Gondwana and Laurentia, during Upper Ordovicic-Lower Siluric and Lower Carbonic, in response to a compressive regimen with vergence to the East.En este trabajo se presentan las principales características petrográficas y geoquímicas de las rocas que constituyen las Sierra de Copacabana, flanco oriental de la Sierra de Paimán y extremo NW de la Sierra de Velasco, dentro de la importante estructura deformativa que se desarrolla en el borde oriental del Sistema de Famatina y da lugar a la Faja Deformada TIPA. Tales rocas corresponden a una tendencia evolutiva de características calcoalcalinas y son netamente peraluminosas, con presencia de minerales como biotita, muscovita, sillimanita, cianita, cordierita y granate. Esta estructura se vincularía con la colisión oclóyica-tacónica entre Gondwana y Laurentia (Dalla Salda el al., 1993 en niveles no muy profundos de la corteza, dentro de un ambiente tectónico transicional entre regiones de arco volcánico y sin-colisional. Este evento colisional habría tenido lugar entre el Ordovícico superior-Silúrico inferior y el Carbónico inferior, respondiendo a un régimen compresivo con vergencia al E.

  4. The pig story (tiboi sakkoko Storytelling of kinship, memories of the past, and rights to plots of ancestral land in Mentawai

    Directory of Open Access Journals (Sweden)

    Juniator Tulius

    2016-07-01

    Full Text Available This paper examines some significant elements of the pig story (tiboi sakkoko. This tale contains crucial information about the collective identity, ancestors and historical events affecting particular Mentawai kin-groups. As families do not preserve their culture and traditions in written form, storytellers of kin-groups have narrated the pig story from generation to generation so as to preserve it carefully. In the course of time, storytellers establish particular ways of telling their stories so as to remember the content and plot of the stories easily. Through the pig story, members of kin groups also recollect their ancestral place of origin and plots of ancestral lands. The role of human memory is indispensable to recalling all these important elements. Therefore, this paper analyses memories of the past of different family generations. To achieve its aims, this paper also evaluates the roles of family stories in the culture and traditions of Mentawai society.

  5. Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction

    DEFF Research Database (Denmark)

    Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin;

    2015-01-01

    the reconstructed cDNAs were tested in cell culture and pigs. Both reconstructed ancestral genomes proved functional, and displayed distinct phenotypes in vitro and in vivo. We suggest that reconstruction of ancestral viruses is a useful tool for experimental and computational investigations of virulence and viral......RNA viruses have the highest known mutation rates. Consequently it is likely that a high proportion of individual RNA virus genomes, isolated from an infected host, will contain lethal mutations and be non-functional. This is problematic if the aim is to clone and investigate high...... a moderately virulent isolate. In addition to here being used as a model for RNA viruses generally, CSFV has high socioeconomic importance and remains a threat to animal welfare and pig production. We find that the majority of the investigated genomes are non-functional and only 12% produced infectious RNA...

  6. Clan, ancestral hall, and sacrifice in the Song Dynasty%宋代的宗族祠堂、祭祀及其它

    Institute of Scientific and Technical Information of China (English)

    游彪

    2007-01-01

    The Song Dynasty is the most important period in Chinese history in terms of the establishment of a new type of clan system. During the Song, Chinese social organization, at the grass-roots level, experienced a fundamental change.In the wake of the late-Tang collapse of the local power system, it was necessary for the Song to replace the ancestral lineage structure and develop a new system to adapt itself to the new circumstances brought on by drastic changes in its economy. Song Confucians played a vital part in the changes. Not only did they gradually solve the theoretical problems of the new type of clan organization, but they also developed many feasible and standard models. Eventually this model would gain even wider acceptance after the Yuan Dynasty with the rise of Neo-Confucianism. Thus, ancestral halls, serving as the major centers for the new clan activities, became prevalent among common people.

  7. Nutrition communication in the Pacific.

    Science.gov (United States)

    White, Leticia; Saweri, Wila

    2007-09-01

    This paper summarises the findings of a scoping study to analyse and guide nutrition communication in some countries in the Pacific region. Nutrition is fundamental to achieving good health and preventing the rising prevalence of non-communicable disease. Dietary patterns are influenced by many factors and complex interactions, such as income, food prices, individual preference and beliefs, cultural traditions, as well as geographical, environmental and social factors. These interactions, the quantitative and qualitative changes in the diet, and the accompanying lifestyle changes seen in recent years, make a collaborative approach to behaviour change essential. This study suggests that by supporting nutritionists to promote nutrition, improve public awareness and by addressing key areas influencing nutrition communication, gains towards improving public health can be made at a regional level. PMID:19588610

  8. Personal and Social Transformation in the Health Area through Education: A Brief Journey from the Ancestral Indigenous Wisdom to the Modern Tyranny of Healthiness

    OpenAIRE

    Andrés de Muller

    2015-01-01

    This paper aims at claiming the ancestral wisdom of indigenous people in the health area. It analyzes how health has been commodified in the interest of large companies (particularly those related to the pharmaceutical industry) to the detriment of a holistic definition of wellness through education. Furthermore, the concept of health as a right disagrees with such commodification or sale to the highest bidder, which prompts dehumanization of health services and public misinformation. The abu...

  9. Broadening the New Perspective on Paul: Paul and the Ethnographical Debate of his Time - The Criticism of Jewish and Pagan Ancestral Customs (1 Thess 2:13-16)

    OpenAIRE

    van Kooten, G.H.; Goodman, M.(Argonne National Laboratory, Argonne, Illinois, 60439, U.S.A.); Ruiten, J.T.A.G.M. van

    2010-01-01

    George H. van Kooten, “Broadening the New Perspective on Paul: Paul and the Ethnographical Debate of His Time—The Criticism of Jewish and Pagan Ancestral Customs (1 Thess 2:13-16),” in Abraham, the Nations, and the Hagarites: Jewish, Christian, and Islamic Perspectives on Kinship with Abraham (ed. Martin Goodman, George H. van Kooten, and Jacques T.A.G.M. van Ruiten; Themes in Biblical Narrative 13; Leiden and Boston: Brill, 2010), 319-344.

  10. The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora)

    OpenAIRE

    Beklemisheva, Violetta R.; Perelman, Polina L.; Lemskaya, Natalya A.; Kulemzina, Anastasia I.; Proskuryakova, Anastasia A.; Burkanov, Vladimir N.; Alexander S Graphodatsky

    2016-01-01

    Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae-monotypic family), near threatened Steller sea li...

  11. Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle.

    Science.gov (United States)

    Huson, Heather J; Kim, Eui-Soo; Godfrey, Robert W; Olson, Timothy A; McClure, Matthew C; Chase, Chad C; Rizzi, Rita; O'Brien, Ana M P; Van Tassell, Curt P; Garcia, José F; Sonstegard, Tad S

    2014-01-01

    The slick hair coat (SLICK) is a dominantly inherited trait typically associated with tropically adapted cattle that are from Criollo descent through Spanish colonization of cattle into the New World. The trait is of interest relative to climate change, due to its association with improved thermo-tolerance and subsequent increased productivity. Previous studies localized the SLICK locus to a 4 cM region on chromosome (BTA) 20 and identified signatures of selection in this region derived from Senepol cattle. The current study compares three slick-haired Criollo-derived breeds including Senepol, Carora, and Romosinuano and three additional slick-haired cross-bred lineages to non-slick ancestral breeds. Genome-wide association (GWA), haplotype analysis, signatures of selection, runs of homozygosity (ROH), and identity by state (IBS) calculations were used to identify a 0.8 Mb (37.7-38.5 Mb) consensus region for the SLICK locus on BTA20 in which contains SKP2 and SPEF2 as possible candidate genes. Three specific haplotype patterns are identified in slick individuals, all with zero frequency in non-slick individuals. Admixture analysis identified common genetic patterns between the three slick breeds at the SLICK locus. Principal component analysis (PCA) and admixture results show Senepol and Romosinuano sharing a higher degree of genetic similarity to one another with a much lesser degree of similarity to Carora. Variation in GWA, haplotype analysis, and IBS calculations with accompanying population structure information supports potentially two mutations, one common to Senepol and Romosinuano and another in Carora, effecting genes contained within our refined location for the SLICK locus.

  12. Somatostatin signaling system as an ancestral mechanism: Myoregulatory activity of an Allatostatin-C peptide in Hydra.

    Science.gov (United States)

    Alzugaray, María Eugenia; Hernández-Martínez, Salvador; Ronderos, Jorge Rafael

    2016-08-01

    The coordination of physiological processes requires precise communication between cells. Cellular interactions allow cells to be functionally related, facilitating the maintaining of homeostasis. Neuropeptides functioning as intercellular signals are widely distributed in Metazoa. It is assumed that neuropeptides were the first intercellular transmitters, appearing early during the evolution. In Cnidarians, neuropeptides are mainly involved in neurotransmission, acting directly or indirectly on epithelial muscle cells, and thereby controlling coordinated movements. Allatostatins are a group of chemically unrelated neuropeptides that were originally characterized based on their ability to inhibit juvenil hormone synthesis in insects. Allatostatin-C has pleiotropic functions, acting as myoregulator in several insects. In these studies, we analyzed the myoregulatory effect of Aedes aegypti Allatostatin-C in Hydra sp., a member of the phylum Cnidaria. Allatostatin-C peptide conjugated with Qdots revealed specifically distributed cell populations that respond to the peptide in different regions of hydroids. In vivo physiological assays using Allatostatin-C showed that the peptide induced changes in shape and length in tentacles, peduncle and gastrovascular cavity. The observed changes were dose and time dependent suggesting the physiological nature of the response. Furthermore, at highest doses, Allatostatin-C induced peristaltic movements of the gastrovascular cavity resembling those that occur during feeding. In silico search of putative Allatostatin-C receptors in Cnidaria showed that genomes predict the existence of proteins of the somatostatin/Allatostatin-C receptors family. Altogether, these results suggest that Allatostatin-C has myoregulatory activity in Hydra sp, playing a role in the control of coordinated movements during feeding, indicating that Allatostatin-C/Somatostatin based signaling might be an ancestral mechanism.

  13. Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle

    Directory of Open Access Journals (Sweden)

    Heather Jay Huson

    2014-04-01

    Full Text Available The slick hair coat (SLICK is a dominantly inherited trait typically associated with tropically adapted cattle that are from Criollo descent through Spanish colonization of cattle into the New World. The trait is of interest relative to climate change, due to its association with improved thermo-tolerance and subsequent increased productivity. Previous studies localized the SLICK locus to a 4 cM region on chromosome (Chr 20 and identified signatures of selection in this region derived from Senepol cattle. The current study compares three slick-haired Criollo-derived breeds including Senepol, Carora, and Romosinuano and three additional slick-haired cross-bred lineages to non-slick ancestral breeds. Genome-wide association (GWA, haplotype analysis, signatures of selection, runs of homozygosity, and identity by state (IBS calculations were used to identify a 0.8Mb (37.7-38.5Mb consensus region for the SLICK locus on Chr 20 in which contains SKP2 and SPEF2 as possible candidate genes. Three specific haplotype patterns are identified in slick individuals, all with zero frequency in non-slick individuals. Admixture analysis identified common genetic patterns between the three slick breeds at the SLICK locus. Principle component analysis and admixture results show Senepol and Romosinuano sharing a higher degree of genetic similarity to one another with a much lesser degree of similarity to Carora. Variation in GWA, haplotype analysis, and IBS calculations with accompanying population structure information supports potentially two mutations, one common to Senepol and Romosinuano and another in Carora, effecting genes contained within our refined location for the SLICK locus.

  14. Phylogenetic analysis of glycerol 3-phosphate acyltransferases in opisthokonts reveals unexpected ancestral complexity and novel modern biosynthetic components.

    Directory of Open Access Journals (Sweden)

    Heather C Smart

    Full Text Available Glycerolipid synthesis represents a central metabolic process of all forms of life. In the last decade multiple genes coding for enzymes responsible for the first step of the pathway, catalyzed by glycerol 3-phosphate acyltransferase (GPAT, have been described, and characterized primarily in model organisms like Saccharomyces cerevisiae and mice. Notoriously, the fungal enzymes share low sequence identity with their known animal counterparts, and the nature of their homology is unclear. Furthermore, two mitochondrial GPAT isoforms have been described in animal cells, while no such enzymes have been identified in Fungi. In order to determine if the yeast and mammalian GPATs are representative of the set of enzymes present in their respective groups, and to test the hypothesis that metazoan orthologues are indeed absent from the fungal clade, a comparative genomic and phylogenetic analysis was performed including organisms spanning the breadth of the Opisthokonta supergroup. Surprisingly, our study unveiled the presence of 'fungal' orthologs in the basal taxa of the holozoa and 'animal' orthologues in the basal holomycetes. This includes a novel clade of fungal homologues, with putative peroxisomal targeting signals, of the mitochondrial/peroxisomal acyltransferases in Metazoa, thus potentially representing an undescribed metabolic capacity in the Fungi. The overall distribution of GPAT homologues is suggestive of high relative complexity in the ancestors of the opisthokont clade, followed by loss and sculpting of the complement in the descendent lineages. Divergence from a general versatile metabolic model, present in ancestrally deduced GPAT complements, points to distinctive contributions of each GPAT isoform to lipid metabolism and homeostasis in contemporary organisms like humans and their fungal pathogens.

  15. Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation

    Directory of Open Access Journals (Sweden)

    Adams Josephine C

    2006-04-01

    Full Text Available Abstract Background Thrombospondins (TSPs are evolutionarily-conserved, extracellular, calcium-binding glycoproteins with important roles in cell-extracellular matrix interactions, angiogenesis, synaptogenesis and connective tissue organisation. Five TSPs, designated TSP-1 through TSP-5, are encoded in the human genome. All but one have known roles in acquired or inherited human diseases. To further understand the roles of TSPs in human physiology and pathology, it would be advantageous to extend the repertoire of relevant vertebrate models. In general the zebrafish is proving an excellent model organism for vertebrate biology, therefore we set out to evaluate the status of TSPs in zebrafish and two species of pufferfish. Results We identified by bioinformatics that three fish species encode larger numbers of TSPs than vertebrates, yet all these sequences group as homologues of TSP-1 to -4. By phylogenomic analysis of neighboring genes, we uncovered that, in fish, a TSP-4-like sequence is encoded from the gene corresponding to the tetrapod TSP-5 gene. Thus, all TSP genes show conservation of synteny between fish and tetrapods. In the human genome, the TSP-1, TSP-3, TSP-4 and TSP-5 genes lie within paralogous regions that provide insight into the ancestral genomic context of vertebrate TSPs. Conclusion A new model for TSP evolution in vertebrates is presented. The TSP-5 protein sequence has evolved rapidly from a TSP-4-like sequence as an innovation in the tetrapod lineage. TSP biology in fish is complicated by the presence of additional lineage- and species-specific TSP paralogues. These novel results give deeper insight into the evolution of TSPs in vertebrates and open new directions for understanding the physiological and pathological roles of TSP-4 and TSP-5 in humans.

  16. Somatostatin signaling system as an ancestral mechanism: Myoregulatory activity of an Allatostatin-C peptide in Hydra.

    Science.gov (United States)

    Alzugaray, María Eugenia; Hernández-Martínez, Salvador; Ronderos, Jorge Rafael

    2016-08-01

    The coordination of physiological processes requires precise communication between cells. Cellular interactions allow cells to be functionally related, facilitating the maintaining of homeostasis. Neuropeptides functioning as intercellular signals are widely distributed in Metazoa. It is assumed that neuropeptides were the first intercellular transmitters, appearing early during the evolution. In Cnidarians, neuropeptides are mainly involved in neurotransmission, acting directly or indirectly on epithelial muscle cells, and thereby controlling coordinated movements. Allatostatins are a group of chemically unrelated neuropeptides that were originally characterized based on their ability to inhibit juvenil hormone synthesis in insects. Allatostatin-C has pleiotropic functions, acting as myoregulator in several insects. In these studies, we analyzed the myoregulatory effect of Aedes aegypti Allatostatin-C in Hydra sp., a member of the phylum Cnidaria. Allatostatin-C peptide conjugated with Qdots revealed specifically distributed cell populations that respond to the peptide in different regions of hydroids. In vivo physiological assays using Allatostatin-C showed that the peptide induced changes in shape and length in tentacles, peduncle and gastrovascular cavity. The observed changes were dose and time dependent suggesting the physiological nature of the response. Furthermore, at highest doses, Allatostatin-C induced peristaltic movements of the gastrovascular cavity resembling those that occur during feeding. In silico search of putative Allatostatin-C receptors in Cnidaria showed that genomes predict the existence of proteins of the somatostatin/Allatostatin-C receptors family. Altogether, these results suggest that Allatostatin-C has myoregulatory activity in Hydra sp, playing a role in the control of coordinated movements during feeding, indicating that Allatostatin-C/Somatostatin based signaling might be an ancestral mechanism. PMID:27288244

  17. Zebrafish Wnt9a,9b paralog comparisons suggest ancestral roles for Wnt9 in neural, oral-pharyngeal ectoderm and mesendoderm.

    Science.gov (United States)

    Cox, A A; Jezewski, P A; Fang, P-K; Payne-Ferreira, T L

    2010-09-01

    The Wnts are a highly conserved family of secreted glycoproteins involved in cell-cell signaling and pattern formation during early embryonic development. Teasing out the role of individual Wnt molecules through development is challenging. Gene duplications are one of the most important mechanisms for generating evolutionary variations. The current consensus suggests that most anatomical variation is generated by divergence of regulatory control regions rather than by coding sequence divergence. Thus phylogenetic comparisons of divergent gene expression patterns are essential to understanding ancestral morphogenetic patterns from which subsequent anatomy diversified in modern lineages. We previously demonstrated strongest expression of zebrafish wnt9b within its heart tube, limb bud and ventral/anterior ectoderm during oral and pharyngeal arch patterning. Our goal is to compare and contrast zwnt9b to its closest paralog, zwnt9a. Sequenced, fulllength zebrafish wnt9a and wnt9b cDNA clones were used for phylogenetic analysis, which suggests their derivation from a common pre-vertebrate archeolog by gene duplication and divergence. Here we demonstrate that zwnt9a expression is found within unique (CNS, pronephric ducts, sensory organs) and overlapping (pectoral fin buds) expression domains relative to zwnt9b. Apparently, Wnt9 paralogs differentially parsed common ancestral expression domains during their subsequent rounds of gene duplication, divergence and loss in different vertebrate lineages. This expression data suggests ancestral roles for Wnt9s in early patterning of neural/oral-pharyngeal ectoderm and mesendoderm derivatives.

  18. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding,preventing and controlling the dramatic global emergence and reemergence of infectious diseases in the Asian Pacific region.APJTB publishes new findings in both basic and clinical(including modern,traditional and epidemiological)research

  19. Ancestral Relationships Using Metafounders

    DEFF Research Database (Denmark)

    Legarra, Andres; Christensen, Ole Fredslund; Vitezica, Zulma G;

    2015-01-01

    Recent use of genomic (marker-based) relationships shows that relationships exist within and across base population (breeds or lines). However, current treatment of pedigree relationships is unable to consider relationships within or across base populations, although such relationships must exist...

  20. Surgeons and suture zones: Hybridization among four surgeonfish species in the Indo-Pacific with variable evolutionary outcomes

    KAUST Repository

    DiBattista, Joseph

    2016-04-30

    Closely related species can provide valuable insights into evolutionary processes through comparison of their ecology, geographic distribution and the history recorded in their genomes. In the Indo-Pacific, many reef fishes are divided into sister species that come into secondary contact at biogeographic borders, most prominently where Indian Ocean and Pacific Ocean faunas meet. It is unclear whether hybridization in this contact zone represents incomplete speciation, secondary contact, an evolutionary dead-end (for hybrids) or some combination of the above. To address these issues, we conducted comprehensive surveys of two widely-distributed surgeonfish species, Acanthurus leucosternon (N = 141) and A. nigricans (N = 412), with mtDNA cytochrome b sequences and ten microsatellite loci. These surgeonfishes are found primarily in the Indian and Pacific Oceans, respectively, but overlap at the Christmas and Cocos-Keeling Islands hybrid zone in the eastern Indian Ocean. We also sampled the two other Pacific members of this species complex, A. achilles (N = 54) and A. japonicus (N = 49), which are known to hybridize with A. nigricans where their ranges overlap. Our results indicate separation between the four species that range from the recent Pleistocene to late Pliocene (235,000 to 2.25 million years ago). The Pacific A. achilles is the most divergent (and possibly ancestral) species with mtDNA dcorr ≈ 0.04, whereas the other two Pacific species (A. japonicus and A. nigricans) are distinguishable only at a population or subspecies level (ΦST = 0.6533, P < 0.001). Little population structure was observed within species, with evidence of recent population expansion across all four geographic ranges. We detected sharing of mtDNA haplotypes between species and extensive hybridization based on microsatellites, consistent with later generation hybrids but also the effects of allele homoplasy. Despite extensive introgression, 98% of specimens had concordance between mt

  1. The Trans-Pacific Partnership and Asia-Pacific Integration: Policy Implications

    OpenAIRE

    Petri, Peter A.; Michael Plummer

    2012-01-01

    The Trans-Pacific Partnership (TPP) agreement, now in negotiation among nine Asia-Pacific countries, could yield annual global income gains of $295 billion (including $78 billion for the United States) and offers a pathway to free trade in the Asia-Pacific with potential gains of $1.9 trillion. The TPP is a crucial step on what is becoming a "Trans-Pacific track" of trade agreements, and its expected template promises to be unusually productive because it offers opportunities for the leading ...

  2. Culturally Speaking: Asian Pacific American Heritage Month

    Science.gov (United States)

    York, Sherry

    2004-01-01

    The celebration of the Asian Pacific American heritage month is to be held in May 2004. The librarians are advised to include authentic literature by and about Asian Americans for cross-cultural understanding.

  3. 1- HARPs of the Pacific Islands Region

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains information on acoustic recordings of cetaceans collected from areas within the Pacific Islands Region since 2006. In collaboration with...

  4. PODs cruise - Pacific Orcinus Distrbution Survey

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Orcinus spp. occur in the Pacific Ocean throughout the West Coast of North America. Data concerning their precise locations and abundance are critical to...

  5. Pacific Islands Climate Change Virtual Library

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Virtual Library provides access to web based climate variability and climate change information and tools relevant to the Pacific Islands including case...

  6. Food irradiation seminar: Asia and the Pacific

    International Nuclear Information System (INIS)

    The report covers the Seminar for Asia and the Pacific on the practical application of food irradiation. The seminar assessed the practical application of food irradiation processes, commercial utilisation and international trade of irradiated food

  7. Eastern Pacific Ocean Purse-seine Fishery

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vessel logbook and landings data sets from U.S.A.-flagged purse-seine vessels fishing in the Eastern Pacific Ocean (EPO). These purse seiners...

  8. Pacific Trade Deal Faces Tough Choices

    Institute of Scientific and Technical Information of China (English)

    Financial Times

    2011-01-01

    @@ The annual meeting of the Asia-Pacific Economic Cooperation (APEC) forum in Hawaii will have something more concrete to focus on than the usual bromides about extending free trade in the region. Barack Obama, the host, will use the occasion to laud progress in the "trans-Pacific partnership" (TPP), a nascent trade deal aiming to knit together a coalition including the US, Chile, Australia, Vietnam and Malaysia.

  9. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>APJTB Monthly Aims&Scope Asian Pacific Jounrnal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges

  10. THE "COMFORT WOMEN" OF THE PACIFIC WAR

    OpenAIRE

    JULIA YURI OKAMOTO

    2013-01-01

    During the pacific war, about 80 to 200 thousand women were mobilized by the Japanese imperial army to sexually serve its soldiers, in one of world’s largest cases of human trafficking. Most of the victims, euphemistically known as "comfort women", came from Korea, Japan's colony at the time, and was attracted by false promises of employment or simply kidnapped by Japanese troops. Taken to military brothels throughout the pacific, they were subjected to repeated rape and beatings. Some of the...

  11. The US Pivot Towards Asia-Pacific

    DEFF Research Database (Denmark)

    Ulrich, Philip Christian

    An analysis of the US new Asia-Pacific strategy. The brief seeks to set the new strategy in the context of American foreign policy since the end of the Cold War.......An analysis of the US new Asia-Pacific strategy. The brief seeks to set the new strategy in the context of American foreign policy since the end of the Cold War....

  12. Renewable Energy Country Profiles. Pacific

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2012-09-15

    The IRENA Renewable Energy Country Profiles take stock of the latest development of renewable energy in two regions where renewable energy can make a significant contribution to combat climate change and bring modern energy services to everyone: Africa and the Pacific. These two regions are presented separately in this volume and its sister publication. The country profiles combine elements of IRENA analysis with the latest information available from a vast array of sources in order to give a brief yet comprehensive and up-to-date picture of the situation of renewable energy that includes energy supply, electrical capacity, energy access, policies, targets, investment climate, projects and endowment in renewable energy resources. Because of the different timelines of these sources, data presented here refer to years between 2008 and 2012. Data availability also differs from country to country, which makes comparison with a wider regional group possible only for the year for which figures are available for all the members of the group; while this may not be the most recent year, the differences between countries, regions and the world remain striking. The current country profiles are just a starting point; they will be extended upon with new indicators to make them more informative, and maintained as a live product on the IRENA website as a key source of information on renewable energy.

  13. Mismatching Perspectives and Pacific Transculturality

    Directory of Open Access Journals (Sweden)

    Anne Holden Rønning

    2013-01-01

    Full Text Available Increased critical consciousness and awareness of interculturality in a global and glocal context at the beginning of the twenty-first century has increasingly used the concept of transculturation when discussing modernities. Politically transculturation can be used to describe processes of negotiation in contemporary society that lead to social awareness and solidarity, as well as ensuring the continuity of societies. The fusing of cultural forms leads to a mismatching of perspectives, hence some critics have preferred to use the terms translation and/or transliteracy to describe this concept. Transculturation is related to the “normal processes of artistic borrowing and influence, by which any culture makes part of its contribution to the conversation of mankind,” as Les Murray maintained, and “it engages multiple lines of difference simultaneously” with overlapping boundaries (Rogers 491. Referring to various authors and linking it to cultural appropriation and border crossings, this article examines how the narrative expression of Both Sides of the Moon, to cite the title of Alan Duff’s book, is a key feature of Pacific writing, in an area where centuries of migration from near and far have exposed different cultures to each other on social, political, linguistic and aesthetic levels. These ‘contact zones’, to use Mary Pratt’s words, provide the reader with constantly moving translated identities, cultural hybridity and a use of language that has a highly local significance in a global context.

  14. Asia-pacific LNG outlook

    International Nuclear Information System (INIS)

    Full text: There are powerful drivers at work in the Asia-Pacific region for clean and affordable energy. Liquefied Natural Gas (LNG) is providing a vital solution to this need. With demand in the region expected to grow from 70 million tonnes per annum to 110 million tonnes per annum by 2010, there are significant opportunities for the Australian natural gas industry and the country. The North West Shelf Venture, Australia's only LNG producer, currently provides some 7.5 million tonnes of LNG to Japanese customers. On 2 April 2001 a 50% expansion in LNG production was announced. The A$2.4 billion expansion project will be ready for start up in mid 2004 and will supply additional LNG to the Japanese customers. This increased demand and supply comes on the back of significant restructuring of the Japanese energy market. In addition to Japan, supply opportunities for LNG from Australia are emerging in China, Korea and Taiwan and the expectation is that there will be an increased reliance on LNG as an energy source. The challenge for Australian companies will be to ensure that opportunities are maximised for current and future LNG producers. David Maxwell, General Manager Commercial of Woodside Energy Limited, Operator of the North West Shelf Venture, will explore the current state of the LNG market, the forces at work in this industry and the outlook for LNG in the region. Copyright (2002) Institution of Chemical Engineers in Australia

  15. ¿Con o sin ancestros?: vigencia de lo ancestral en la Amazonía peruana

    Directory of Open Access Journals (Sweden)

    Thomas Mouriès

    2014-06-01

    Full Text Available La existencia o no de ancestros en la Amazonía indígena ha sido objeto de importantes debates. Sin embargo, los líderes de la región no dudan en llamar ‘ancestrales’ sus saberes, normas o territorios, en un sentido que, desde un punto de vista académico, puede parecer enigmático. «Ancestrales, pero… ¿con o sin ancestros?», preguntaría entonces, confuso, el antropólogo. En este artículo propongo aportar elementos de respuesta a esta pregunta a través del caso peruano. Primero analizo cómo los líderes indígenas amazónicos, conectándose al circuito del derecho internacional, adoptan la noción jurídica de ‘posesión ancestral’ del territorio para adaptarla al ámbito político. Este planteamiento rinde cuenta de la generalización y uniformización reciente del vocablo ‘ancestral’ pero deja pendiente el problema de su eventual articulación con las cosmologías indígenas que pretende reflejar. Por eso, en la segunda parte, intento sondear sobre la pertinencia de la categoría de ‘ancestro’ en la Amazonía indígena, recordando brevemente el debate académico para ir definiendo en qué medida esta categoría puede cobrar sentido. A partir del testimonio de un experimentado líder awajún, la tercera parte permite, entonces, volver más explícitos los diferentes sentidos y planos referenciales que despliega la referencia a lo ancestral, mostrando cómo los indígenas amazónicos no solo adoptan elementos conceptuales y discursivos externos, sino que al mismo tiempo los transforman a partir de sus propias singularidades cosmológicas y perspectivas políticas.

  16. Zonal displacement of western Pacific warm pool and zonal wind anomaly over the Pacific Ocean

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The thermal condition anomaly of the western Pacific warm pool and its zonal displacement have very important influences on climate change in East Asia and even the whole world.However, the impact of the zonal wind anomaly over the Pacific Ocean on zonal displacement of the warm pool has not yet been analyzed based on long-term record. Therefore, it is important to study the zonal displacement of the warm pool and its response to the zonal wind anomaly over the equatorial Pacific Ocean. Based on the NCDC monthly averaged SST (sea surface temperature) data in 2°×2° grid in the Pacific Ocean from 1950 to 2000, and the NCEP/NCAR global monthly averaged 850 hPa zonal wind data from 1949 to 2000, the relationships between zonal displacements of the western Pacific warm pool and zonal wind anomalies over the tropical Pacific Ocean are analyzed in this paper. The results show that the zonal displacements are closely related to the zonal wind anomalies over the western, central and eastern equatorial Pacific Ocean. Composite analysis indicates that during ENSO events, the warm pool displacement was trigged by the zonal wind anomalies over the western equatorial Pacific Ocean in early stage and the process proceeded under the zonal wind anomalies over the central and eastern equatorial Pacific Ocean unless the wind direction changes. Therefore, in addition to the zonal wind anomaly over the western Pacific, the zonal wind anomalies over the central and eastern Pacific Ocean should be considered also in investigation the dynamical mechanisms of the zonal displacement of the warm pool.

  17. Paleomagnetic constraints on Cenozoic deformation along the northwest margin of the Pacific-Australian plate boundary zone through New Zealand

    Science.gov (United States)

    Turner, Gillian M.; Michalk, Daniel M.; Little, Timothy A.

    2012-02-01

    New Zealand straddles the boundary between the Australian and Pacific plates, a zone of oblique continental convergence and transform motion. The actively deforming region offers a unique opportunity to study the dynamics of deformation, including vertical-axis rotation of rigid blocks within a transcurrent plate boundary zone. We present and interpret paleomagnetic data from three new and three previously published sites from the NW part of the South Island (NW Nelson region), where sedimentary strata dated between 36 and 10 Ma overlie the crystalline Paleozoic basement assemblages of the Gondwana margin. Compared with reference directions from the Australian apparent polar wander path, none of the results provide evidence of post-Eocene vertical-axis rotation. This suggests that for the past 36 Myr NW Nelson has remained a strong, coherent block that has moved as a contiguous part of the Australian plate. This is in marked contrast to the strongly rotated nature of more outboard accreted terranes to the east. For example, the Hikurangi Margin in the North Island (NW of the Alpine Fault) and the Marlborough region in the NE of the South Island (SE of the Alpine Fault), have both undergone diverse clockwise rotations of up to 140° since the early Paleogene. The NW tip of the South Island seems to have acted as a rigid backstop relative to these more complex oroclinal deformations. We infer that, because of its relatively stiff bulk rheology, it has not been drawn into the distributed plate boundary rotational deformation associated with the New Zealand Orocline.

  18. 76 FR 68332 - International Fisheries; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean

    Science.gov (United States)

    2011-11-04

    ... coastal fisheries. During the IATTC's 82nd Meeting, IATTC scientific staff showed estimates illustrating a...; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean AGENCY: National Marine... proposed rule in the Federal Register (76 FR 560790) to revise regulations at 50 CFR part 300, subpart...

  19. 76 FR 60790 - International Fisheries; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean

    Science.gov (United States)

    2011-09-30

    ... coastal fisheries. During the IATTC's 82nd Meeting, IATTC scientific staff showed estimates illustrating a...; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean AGENCY: National Marine... Advanced Notice of Proposed Rulemaking (ANPR) on July 7, 2011 (76 FR 39808), to request public comment...

  20. 78 FR 23539 - National Marine Fisheries Service, Pacific Fishery Management Council (Pacific Council); May 6...

    Science.gov (United States)

    2013-04-19

    ... meeting is to discuss issues of relevance to the Councils, including: budget issues, CCC meeting protocols... Renaissance Hotel, 1127 Connecticut Avenue NW., Washington DC 20036. The Pacific Council address is Pacific... p.m. Lunch 1:30-4 p.m. CCC Meeting Guidance Budget Issues 4-5 p.m. The Marine Fisheries...

  1. 78 FR 33240 - International Fisheries; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean

    Science.gov (United States)

    2013-06-04

    ... proposed rule in the Federal Register (76 FR 560790) to implement Resolution C-12-09 of the IATTC by... central Pacific Ocean. In 2011, NMFS determined overfishing is occurring on Pacific bluefin tuna (76 FR... overexploitation of these stocks and to promote sustainable fisheries. Current IATTC membership includes:...

  2. The Features of Development in the Pacific Countries of the African, Caribbean and Pacific Group

    Science.gov (United States)

    Cuenca Garcia, Eduardo; Rodriguez Martin, Jose Antonio; Navarro Pabsdorf, Margarita

    2010-01-01

    In this article we present a new proposal for the measurement of development, applied to the Pacific Countries of the African, Caribbean and Pacific Group (ACP), conditional on their insularity, and with privileged relations with the European Union. Our index has been constructed attending to the criteria defined in the Goals of the Millennium…

  3. Personal and Social Transformation in the Health Area through Education: A Brief Journey from the Ancestral Indigenous Wisdom to the Modern Tyranny of Healthiness

    Directory of Open Access Journals (Sweden)

    Andrés de Muller

    2015-09-01

    Full Text Available This paper aims at claiming the ancestral wisdom of indigenous people in the health area. It analyzes how health has been commodified in the interest of large companies (particularly those related to the pharmaceutical industry to the detriment of a holistic definition of wellness through education. Furthermore, the concept of health as a right disagrees with such commodification or sale to the highest bidder, which prompts dehumanization of health services and public misinformation. The abundance of self-proclaimed gurus or healers who appeal to autosuggestion contributes both to confusion and to an unhealthy cult of healthiness.

  4. The Integration of Traditional and New in Neoteric Pudong Ancestral Buildings%浦东近代祠堂建筑的传统与新统

    Institute of Scientific and Technical Information of China (English)

    王凤席; 曹永康

    2011-01-01

    祠堂是在中国传统社会中具有极为重要意义的一种建筑类型,在传统社会中具有维护社会稳定关系的重要社会职能.因此祠堂作为一种建筑类型具有超级稳定的特点.然而这种稳定的建筑类型在近代外来文化的冲击下也发生了一定的改变.该文对浦东区6座近代祠堂进行案例研究,通过对这种变化的描述与分析,理清祠堂建筑中表发生变化的部分与发生了变化部分.以及变化的程度,并进一步探讨这种变与不变背后的深层原因.在一定程度上有助于了解建筑文化交流与嬗变之中的变迁特点与模式.%The ancestral hall is a very important building type, which maintains the function of social stability in traditional Chinese society. Therefore, as an architecture type,the ancestral hall is super-stable. However,under the impact of foreign culture in modern times, certain changes have taken place in this construction too. This paper studies six cases of neoteric ancestral halls in Pudong District. Through the description and analysis of such changes, the issue which part of ancestral buildings has changed, and which did not, is clarified, as well as the degree of change. And the Underlying reasons are investigated .Hope that this study will help to understand the exchanges and Evolution of Architectural cultural in characteristics and mode to some extent.

  5. Latest Miocene-earliest Pliocene evolution of the ancestral Rio Grande at the Española-San Luis Basin boundary, northern New Mexico

    Science.gov (United States)

    Daniel J. Koning,; Scott Aby,; Grauch, V. J.; Matthew J. Zimmerer,

    2016-01-01

    We use stratigraphic relations, paleoflow data, and 40Ar/39Ar dating to interpret net aggradation, punctuated by at least two minor incisional events, along part of the upper ancestral Rio Grande fluvial system between 5.5 and 4.5 Ma (in northern New Mexico). The studied fluvial deposits, which we informally call the Sandlin unit of the Santa Fe Group, overlie a structural high between the San Luis and Española Basins. The Sandlin unit was deposited by two merging, west- to southwest-flowing, ancestral Rio Grande tributaries respectively sourced in the central Taos Mountains and southern Taos Mountains-northeastern Picuris Mountains. The river confluence progressively shifted southwestward (downstream) with time, and the integrated river (ancestral Rio Grande) flowed southwards into the Española Basin to merge with the ancestral Rio Chama. Just prior to the end of the Miocene, this fluvial system was incised in the southern part of the study area (resulting in an approximately 4–7 km wide paleovalley), and had sufficient competency to transport cobbles and boulders. Sometime between emplacement of two basalt flows dated at 5.54± 0.38 Ma and 4.82±0.20 Ma (groundmass 40Ar/39Ar ages), this fluvial system deposited 10–12 m of sandier sediment (lower Sandlin subunit) preserved in the northern part of this paleovalley. The fluvial system widened between 4.82±0.20 and 4.50±0.07 Ma, depositing coarse sand and fine gravel up to 14 km north of the present-day Rio Grande. This 10–25 m-thick sediment package (upper Sandlin unit) buried earlier south- to southeast-trending paleovalleys (500–800 m wide) inferred from aeromagnetic data. Two brief incisional events are recognized. The first was caused by the 4.82±0.20 Ma basalt flow impounding south-flowing paleodrainages, and the second occurred shortly after emplacement of a 4.69±0.09 Ma basalt flow in the northern study area. Drivers responsible for Sandlin unit aggradation may include climate

  6. Influenza vaccines: an Asia-Pacific perspective.

    Science.gov (United States)

    Jennings, Lance C

    2013-11-01

    This article provides an overview of some aspects of seasonal, pre-pandemic and pandemic influenza vaccines and initiatives aimed to increase influenza vaccine use within the Asia-Pacific region. Expanding the use of influenza vaccines in the Asia-Pacific region faces many challenges. Despite the recent regional history for the emergence of novel viruses, SARS, the H5N1 and H7N9, and the generation of and global seeding of seasonal influenza viruses and initiatives by WHO and other organisations to expand influenza awareness, the use of seasonal influenza vaccines remains low. The improvement in current vaccine technologies with the licensing of quadrivalent, live-attenuated, cell culture-based, adjuvanted and the first recombinant influenza vaccine is an important step. The development of novel influenza vaccines able to provide improved protection and with improved manufacturing capacity is also advancing rapidly. However, of ongoing concern are seasonal influenza impact and the low use of seasonal influenza vaccines in the Asia-Pacific region. Improved influenza control strategies and their implementation in the region are needed. Initiatives by the World Health Organization (WHO), and specifically the Western Pacific Regional Office of WHO, are focusing on consistent vaccine policies and guidelines in countries in the region. The Asian-Pacific Alliance for the Control of Influenza (APACI) is contributing through the coordination of influenza advocacy initiates. PMID:24215381

  7. The Pacific Island Health Care Project

    Directory of Open Access Journals (Sweden)

    Donald Ames Person

    2014-10-01

    Full Text Available Introduction/BackgroundUS Associated/Affiliated Pacific Islands (USAPI include 3 Freely Associated States: Marshall Islands, Federated States of Micronesia, Palau and 3 Territories: American Samoa, Guam, and Commonwealth of the Northern Mariana Islands. ObjectiveThe Pacific Island Health Care Project (PIHCP provides humanitarian medical referral/consultation/care to >500,000 indigenous people of these remote islands. Methods In the mid-1990s, we developed a simple store-and-forward program to link the USAPI with Tripler Army Medical Center (TAMC. This application allowed image attachment to email consultations. ResultsMore than 8000 Pacific Islanders have benefited from the program. 3000 Pacific Islanders prior to telemedicine (1990-1997 and since store-and-forward telemedicine (1997-present, the PIHCP has helped an additional 5000. Records post dynamically and are stored in an archival database. Conclusion The PIHCP is the longest running telemedicine program in the world delivering humanitarian medical care. It has bridged the Developing World of the remote Pacific islands with advanced medical and surgical care available at a major US military teaching hospital.(The opinions expressed here are those of the author and not that of the Army, Department of Defense, or the US Government.

  8. Asia-Pacific lube oil markets

    Energy Technology Data Exchange (ETDEWEB)

    Yamaguchi, N.

    2001-06-01

    An overview of the Asia-Pacific (AP) lubricating oils market, its special characteristics, and its role in the global economy are presented. In the 'boom and bust' years of 1997-1999, the Asia-Pacific market was even bigger then the US market. For the short-term, the scenario is surplus capacity and poor margins, but in the long term there is enormous potential for growth. How fuel demand and quality is related to engine type is discussed. The three basic grades of baseoils are described, and the Asia-Pacific lube demand and the Asia-Pacific lube oil supply are discussed. There are 15 diagrams giving data on: (i) finished lubes in world markets as a percentage of total; (ii) how lube demand follows GDP per capita in Asia; (iii) AP baseoil capacity relationships; (iv) AP baseoil disposition by end use; (v) AP changing shares of baseoil demand; (vi) AP finished lube demand by subregion; (vii) AP finished lube demand growth, indexed; (viii) AP baseoil capacity by region; Singapore baseoil vs. Dubai crude prices, 1992-99; (ix) Singapore baseoil vs. crude prices, 1992-99; (x) AP baseoil deficit moved to surplus; (xi) AP baseoil production; (xii) East Asia net percentage change in lube sales, 1997-1999. (xiii) Southeast Asia net percentage change in lube sales, 1997-1999; (xiv) South East Asia and Australia net percentage change in lube sales, 1997-1999 and (xv) Asia-Pacific major lube marketers.

  9. Holocene Hydrologic Changes in the Tropical Pacific

    Science.gov (United States)

    Sachs, J. P.; Zhang, Z.; Smittenberg, R.; Saenger, C.; Sachse, D.

    2006-12-01

    The tropical Pacific Ocean plays a central role in the climate system by providing massive fluxes of sensible and latent heat to the atmosphere that have the potential to drive global climate changes. Though some abrupt climate events in the late Pleistocene and Holocene were likely forced from the North Atlantic region, it is entirely possible that some had their trigger in the tropics. A paucity of paleoclimate records from the tropical Pacific region has hampered efforts to evaluate this possibility. Here we present highly resolved and well-dated molecular and isotopic records of rainfall from Palau (western Pacific), Kiribati (central Pacific) and Galapagos (eastern Pacific) lake sediments that indicate large hydrologic changes on decadal to millennial time scales throughout the Holocene. We note that some of the largest events in our records occurred during the last millennium. Implications for the mean state of the tropical climate, the position of the inter-tropical convergence zone (ITCZ), and the El Nino-Southern Oscillation (ENSO) system will be addressed.

  10. Influenza vaccines: an Asia-Pacific perspective.

    Science.gov (United States)

    Jennings, Lance C

    2013-11-01

    This article provides an overview of some aspects of seasonal, pre-pandemic and pandemic influenza vaccines and initiatives aimed to increase influenza vaccine use within the Asia-Pacific region. Expanding the use of influenza vaccines in the Asia-Pacific region faces many challenges. Despite the recent regional history for the emergence of novel viruses, SARS, the H5N1 and H7N9, and the generation of and global seeding of seasonal influenza viruses and initiatives by WHO and other organisations to expand influenza awareness, the use of seasonal influenza vaccines remains low. The improvement in current vaccine technologies with the licensing of quadrivalent, live-attenuated, cell culture-based, adjuvanted and the first recombinant influenza vaccine is an important step. The development of novel influenza vaccines able to provide improved protection and with improved manufacturing capacity is also advancing rapidly. However, of ongoing concern are seasonal influenza impact and the low use of seasonal influenza vaccines in the Asia-Pacific region. Improved influenza control strategies and their implementation in the region are needed. Initiatives by the World Health Organization (WHO), and specifically the Western Pacific Regional Office of WHO, are focusing on consistent vaccine policies and guidelines in countries in the region. The Asian-Pacific Alliance for the Control of Influenza (APACI) is contributing through the coordination of influenza advocacy initiates.

  11. Magmatic evolution in the N-Gondwana margin related to the opening of the Rheic Ocean—evidence from the Upper Parautochthon of the Galicia-Trás-os-Montes Zone and from the Central Iberian Zone (NW Iberian Massif)

    Science.gov (United States)

    Dias da Silva, Ícaro; Díez Fernández, Rubén; Díez-Montes, Alejandro; González Clavijo, Emilio; Foster, David A.

    2016-06-01

    LA-MC-ICP-MS U-Pb zircon ages and whole-rock geochemical data obtained from volcanic rocks erupted in the northern margin of Gondwana provide new insights on the polyphase magmatic evolution of the NW Iberian domain during the establishment of passive margin conditions in Lower Paleozoic times. The U-Pb data show crystallization ages of ca. 455 Ma for two calc-alkaline rhyolites sampled in the Upper Parautochthon of the eastern Galicia—Trás-os-Montes Zone (GTMZ) and for an intraplate basalt intruded into Middle Ordovician slates of the autochthonous series of the Central Iberian Zone (CIZ). Together with previous data, the ages obtained reveal a periodic magmatic activity across the northern Gondwana margin during the Lower Paleozoic, which is comparable to that observed in NE Iberia and in other massifs of the Mediterranean realm. Both geochronological and geochemical data reinforce paleontological and stratigraphic evidences for paleogeographic proximity between these domains and contribute to the recognition of extensional-related magmatism along the northern margin of Central Gondwana associated with the opening of the Rheic Ocean.

  12. North Pacific sea ice cover, a predictor for the Western North Pacific typhoon frequency?

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The relationship between the sea ice cover in the North Pacific and the typhoon frequency has been studied in this paper. It follows that the index for the sea ice cover in the North Pacific (ISA) both in December-January-February (DJF) and in March-April-May (MAM) is negatively correlated with annual typhoon number over the western North Pacific (TNWNP) during 1965―2004, with correlation coeffi-cients of -0.42 and -0.49 respectively (above 99% significant level). Large sea ice cover in the North Pacific tends to decrease TNWNP. Positive ISA (MAM) is associated with the tropical circulation and SST anomalies in the North Pacific, which may lead to unfavorable dynamic and thermal conditions for typhoon genesis over WNP from June to October (JJASO). The variability of the atmospheric circula-tion over the North Pacific, associated with the ISA anomaly in MAM is connected to the tropical at-mospheric circulation variability in MAM via the teleconnection wave train. Besides, as the tropical circulation has strong seasonal persistency from the MAM to JJASO, thus, the ISA in MAM-related variability of the tropical atmospheric circulation as well as the SST can affect the typhoon activity over the western North Pacific.

  13. North Pacific sea ice cover, a predictor for the Western North Pacific typhoon frequency?

    Institute of Scientific and Technical Information of China (English)

    FAN Ke

    2007-01-01

    The relationship between the sea ice cover in the North Pacific and the typhoon frequency has been studied in this paper. It follows that the index for the sea ice cover in the North Pacific (ISA) both in December-January-February (DJF) and in March-April-May (MAM) is negatively correlated with annual typhoon number over the western North Pacific (TNWNP) during 1965-2004, with correlation coefficients of -0.42 and -0.49 respectively (above 99% significant level). Large sea ice cover in the North Pacific tends to decrease TNWNP. Positive ISA (MAM) is associated with the tropical circulation and SST anomalies in the North Pacific, which may lead to unfavorable dynamic and thermal conditions for typhoon genesis over WNP from June to October (JJASO). The variability of the atmospheric circulation over the North Pacific, associated with the ISA anomaly in MAM is connected to the tropical atmospheric circulation variability in MAM via the teleconnection wave train. Besides, as the tropical circulation has strong seasonal persistency from the MAM to JJASO, thus, the ISA in MAM-related variability of the tropical atmospheric circulation as well as the SST can affect the typhoon activity over the western North Pacific.

  14. The parasite Ichthyophonus sp. in Pacific herring from the coastal NE Pacific

    Science.gov (United States)

    Hershberger, Paul K.; Gregg, Jacob L.; Hart, Lucas M.; Moffitt, Steve; Brenner, Richard L.; Stick, K.; Coonradt, Eric; Otis, E. O.; Vollenweider, Johanna J.; Garver, Kyle A.; Lovy, Jan; Meyers, Tilden R.

    2016-01-01

    The protistan parasite Ichthyophonus occurred in populations of Pacific herring Clupea pallasii Valenciennes throughout coastal areas of the NE Pacific, ranging from Puget Sound, WA north to the Gulf of Alaska, AK. Infection prevalence in local Pacific herring stocks varied seasonally and annually, and a general pattern of increasing prevalence with host size and/or age persisted throughout the NE Pacific. An exception to this zoographic pattern occurred among a group of juvenile, age 1+ year Pacific herring from Cordova Harbor, AK in June 2010, which demonstrated an unusually high infection prevalence of 35%. Reasons for this anomaly were hypothesized to involve anthropogenic influences that resulted in locally elevated infection pressures. Interannual declines in infection prevalence from some populations (e.g. Lower Cook Inlet, AK; from 20–32% in 2007 to 0–3% during 2009–13) or from the largest size cohorts of other populations (e.g. Sitka Sound, AK; from 62.5% in 2007 to 19.6% in 2013) were likely a reflection of selective mortality among the infected cohorts. All available information for Ichthyophonus in the NE Pacific, including broad geographic range, low host specificity and presence in archived Pacific herring tissue samples dating to the 1980s, indicate a long-standing host–pathogen relationship.

  15. Demineralization of Gondwana coal with Pseudomonas mendocina strain B6-1: a case study of coal from Gopinathpur top and bottom seams of Mugma mine, Dhanbad, Jharkhand (India)

    Institute of Scientific and Technical Information of China (English)

    Prakash K.Singh; Asha Lata Singh; Mahendra P.Singh; A.S.Naik; Dharmshila Singh; Spardha Rai; Aniruddha Kumar

    2016-01-01

    In the present investigation an attempt has been made to demineralize the Gondwana coal of Gopinathpur top and bottom seams of Mugma mine,Raniganj coalfield,Dhanbad with the help of Pseudomonas mendocina strain B6-1.The change in the amount of ash yield and decrease in the concentration of selected minor elements like Na,K,Mn and Ca and environmentally sensitive selected trace elements such as Cd,Pb,Se,Ni,Mn,and Zn have been studied as a function of time of bacterial treatment as well as with variation in the bacterial biomass.After 28 days of bacterial treatment there was variable amount of decrease observed in ash yield as well as in the concentration of minor and trace elements.The removal of the elements was further enhanced with the increase in the bacterial biomass from 10 to 25 mg/mL.Due to over exploitation of superior grade coals in the country,the remaining coal resources,available for current use,are inferior in grade and contain high level of impurities and there is ample scope of bio-beneficiation of these coals using bacterial biomass.

  16. Improved Moscovian part of the Gondwana APWP for paleocontinental reconstructions, obtained from a first paleomagnetic pole, age-constrained by a fold test, from In Ezzane area in the Murzuq basin (Algeria, stable Africa)

    Science.gov (United States)

    Amenna, M.; Derder, M. E. M.; Henry, B.; Bayou, B.; Maouche, S.; Bouabdallah, H.; Ouabadi, A.; Ayache, M.; Beddiaf, M.

    2014-11-01

    To improve paleocontinental reconstructions, paleomagnetic reference curves (Apparent Polar Wander Path: APWP) feature for large continents have to be continuously refined by adding up new high-quality data. For stable Africa, the Moscovian period was favorable for such aim, with well-dated and widespread geological formations. A new study has been conducted in the Upper “Dembaba” geological formation of Lower Moscovian age outcropping in the western part of the “Murzuq” basin (Saharan platform). Well-defined ChRMs, combined with remagnetization circles data, both constrained in age by a positive fold test, yield a new significant paleomagnetic pole (λ = 25.2°S, ϕ = 59.9°E, K = 55, A95 = 5.4°). When joined with previous African data of the same age, it gives an improved reference pole for Africa (λ = 28.9°S, ϕ = 54.5°E, K = 106, A95 = 3.6°). The Mean Moscovian paleomagnetic pole determined from an updated Gondwana Paleozoic APWP (λ = 29.4°S, ϕ = 51.5°E, K = 11, A95 = 1.8°), associated with the corresponding Laurussia pole (Domeier et al., 2012), yields a more constrained paleocontinental reconstruction for 310 Ma.

  17. Terminal suturing of Gondwana along the southern margin of South China Craton: Evidence from detrital zircon U-Pb ages and Hf isotopes in Cambrian and Ordovician strata, Hainan Island

    Science.gov (United States)

    Xu, Yajun; Cawood, Peter A.; Du, Yuansheng; Zhong, Zengqiu; Hughes, Nigel C.

    2014-12-01

    Hainan Island, located near the southern end of mainland South China, consists of the Qiongzhong Block to the north and the Sanya Block to the south. In the Cambrian, these blocks were separated by an intervening ocean. U-Pb ages and Hf isotope compositions of detrital zircons from the Cambrian succession in the Sanya Block suggest that the unit contains detritus derived from late Paleoproterozoic and Mesoproterozoic units along the western margin of the West Australia Craton (e.g., Northampton Complex) or the Albany-Fraser-Wilkes orogen, which separates the West Australia and Mawson cratons. Thus, in the Cambrian the Sanya Block was not part of the South China Craton but rather part of the West Australian Craton and its environs. In contrast, overlying Late Ordovician strata display evidence for input of detritus from the Qiongzhong Block, which constituted part of the southeastern convergent plate margin of the South China Craton in the early Paleozoic. The evolving provenance record of the Cambrian and Ordovician strata suggests that the juxtaposition of South China and West Australian cratons occurred during the early to mid-Ordovician. The event was linked with the northern continuation of Kuungan Orogeny, with South China providing a record of final assembly of Gondwana.

  18. Zooplanktonic diversity in the western Pacific

    OpenAIRE

    Mao Lin; Chunguang Wang; Yanguo Wang; Peng Xiang; Yu Wang; Guangshan Lian; Ruixiang Chen; Xiaoyin Chen; Youyin Ye; Yanyu Dai; Jinghong Lin; Zhenzu Xu; Jiaqi Huang; Donghui Guo

    2011-01-01

    The western Pacific region has been operating as a centre for the origin of marine biodiversity: the richest diversity of many marine taxa was found in these waters. Therefore, biodiversity research and con-servation efforts in this area are necessary in order to promote the integrative and international management of this resource. The present work is a compilation of numbers of all the families, genera and species of ma-jor taxa of zooplankton known in the western Pacific Ocean(106°–150°E, ...

  19. Information for Authors Asian Pacific Journal of Tropical Biomedcine GENERAL

    Institute of Scientific and Technical Information of China (English)

    2013-01-01

    <正>Asian Pacific Journal of Tropica)Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and aims to set up an academic communicating plaflorm for Chinese and scientists all over the world on tropical biomedicine

  20. 78 FR 59657 - Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2013-09-27

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE... (NOAA), Commerce. ACTION: Notice of public meeting. SUMMARY: The Pacific Fishery Management Council (Pacific Council) will hold a work session for the Groundfish Electronic Monitoring Policy...

  1. AFSC/REFM: Pacific cod Localized Depletion Study

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Data from Localized Depletion study for Pacific cod 2001-2005. Study was conducted using cod pot gear to measure localized abundance of Pacific cod inside and...

  2. 33 CFR 3.04-3 - Pacific Area.

    Science.gov (United States)

    2010-07-01

    ....04-3 Pacific Area. (a) The Area Office is in Alameda, CA. (b) The Pacific Area is comprised of the.... longitude to the North American land mass; thence along the west coast of the North, Central, and...

  3. 75 FR 80470 - Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2010-12-22

    ... discuss improvements to the biennial management process. The GMT may also address other assignments... National Oceanic and Atmospheric Administration RIN 0648-XA103 Pacific Fishery Management Council; Public... (NOAA), Commerce. ACTION: Notice of public meeting. SUMMARY: The Pacific Fishery Management...

  4. Asia Pacific Mangrove Information Network (APMIN): A conceptual model

    Digital Repository Service at National Institute of Oceanography (India)

    Chavan, V.S.; Jagtap, T.G.; Untawale, A.G.

    Asia Pacific Mangrove Information Network (APMIN), its structure and scope, is discussed in this paper. Establishment of National Mangrove Information Centers (NMIC) in 20 Asia-Pacific countries, would contribute towards development of databases...

  5. FastStats: Health of Asian or Pacific Islander Population

    Science.gov (United States)

    ... NCHS Home Health of Asian or Pacific Islander Population Recommend on Facebook Tweet Share Compartir Data are ... U.S. Live births for Asian or Pacific Islander population Number of births: 282,723 Births per 1, ...

  6. Out of the Pacific and back again: the matrilineal history of Pacific killer whale ecotypes

    DEFF Research Database (Denmark)

    Foote, Andrew David; Morin, PA; JW, Durban;

    2011-01-01

    Killer whales (Orcinus orca) are the most widely distributed marine mammals and have radiated to occupy a range of ecological niches. Disparate sympatric types are found in the North Atlantic, Antarctic and North Pacific oceans, however, little is known about the underlying mechanisms driving...... reconstructions and a clinal decrease in diversity suggest a North Pacific to North Atlantic founding event, and the later return of killer whales to the North Pacific. Therefore, ecological divergence could have occurred during the allopatric phase through drift or selection and/or may have either commenced...

  7. δ-Conotoxin SuVIA suggests an evolutionary link between ancestral predator defence and the origin of fish-hunting behaviour in carnivorous cone snails.

    Science.gov (United States)

    Jin, Ai-Hua; Israel, Mathilde R; Inserra, Marco C; Smith, Jennifer J; Lewis, Richard J; Alewood, Paul F; Vetter, Irina; Dutertre, Sébastien

    2015-07-22

    Some venomous cone snails feed on small fishes using an immobilizing combination of synergistic venom peptides that target Kv and Nav channels. As part of this envenomation strategy, δ-conotoxins are potent ichtyotoxins that enhance Nav channel function. δ-Conotoxins belong to an ancient and widely distributed gene superfamily, but any evolutionary link from ancestral worm-eating cone snails to modern piscivorous species has not been elucidated. Here, we report the discovery of SuVIA, a potent vertebrate-active δ-conotoxin characterized from a vermivorous cone snail (Conus suturatus). SuVIA is equipotent at hNaV1.3, hNaV1.4 and hNaV1.6 with EC50s in the low nanomolar range. SuVIA also increased peak hNaV1.7 current by approximately 75% and shifted the voltage-dependence of activation to more hyperpolarized potentials from -15 mV to -25 mV, with little effect on the voltage-dependence of inactivation. Interestingly, the proximal venom gland expression and pain-inducing effect of SuVIA in mammals suggest that δ-conotoxins in vermivorous cone snails play a defensive role against higher order vertebrates. We propose that δ-conotoxins originally evolved in ancestral vermivorous cones to defend against larger predators including fishes have been repurposed to facilitate a shift to piscivorous behaviour, suggesting an unexpected underlying mechanism for this remarkable evolutionary transition. PMID:26156767

  8. 78 FR 13641 - Pacific Fishery Management Council (Pacific Council); March 5-11, 2013 Pacific Council Meeting

    Science.gov (United States)

    2013-02-28

    ... understanding various issues and objectives associated with developing a new management process for groundfish.... Amendment 24: Improvements to the Groundfish Management Process I. Highly Migratory Species Management 1... National Oceanic and Atmospheric Administration RIN 0648-XC527 Pacific Fishery Management Council...

  9. The Southwest Pacific Ocean circulation and climate experiment (SPICE)

    OpenAIRE

    Ganachaud, Alexandre; Cravatte, Sophie; A. Melet; Schiller, A.; Holbrook, N J; Sloyan, B.M.; Widlansky, M.J.; Bowen, M; Verron, J.; Wiles, P; K. Ridgway; Sutton, P.; Sprintall, J.; Steinberg, C.; Brassington, G.

    2014-01-01

    The Southwest Pacific Ocean Circulation and Climate Experiment (SPICE) is an international research program under the auspices of CLIVAR. The key objectives are to understand the Southwest Pacific Ocean circulation and the South Pacific Convergence Zone (SPCZ) dynamics, as well as their influence on regional and basin-scale climate patterns. South Pacific thermocline waters are transported in the westward flowing South Equatorial Current (SEC) toward Australia and Papua-New Guinea. On its way...

  10. The UCLA Asian Pacific American Voter Registration Study

    OpenAIRE

    Nakanishi, Don T.

    1986-01-01

    Asian Pacific American political involvement is not a new phenomenon, but it has clearly become a significant focus of attention for the Asian Pacific American population. Perhaps at no other period in Asian Pacific American history have so many individuals and organizations of different issue orientations participated in a wide array of political activities, especially in relation to American electoral politics, but also in the affairs of the Pacific Rim. At the same time, what has come to b...

  11. Estimating ancestral distributions of lineages with uncertain sister groups: a statistical approach to Dispersal-Vicariance Analysis and a case using Aesculus L. (Sapindaceae) including fossils

    Institute of Scientific and Technical Information of China (English)

    A.J. HARRIS; Qiu-Yun (Jenny) XIANG

    2009-01-01

    We propose a simple statistical approach for using Dispersal-Vicariance Analysis (DIVA) software to infer biogeographic histories without fully bifurcating trees. In this approach, ancestral ranges are first optimized for a sample of Bayesian trees. The probability P of an ancestral range r at a node is then calculated as P(rY)= Σnt=1 F(rY)tPt where Y is a node, and F(rY) is the frequency of range r among all the optimal solutions resulting from DIVA optimization at node Y, t is one of n topologies optimized, and Pt is the probability of topology t. Node Y is a hypothesized ancestor shared by a specific crown lineage and the sister of that lineage "x", where x may vary due to phylogenetic uncertainty (polytomies and nodes with posterior probability <100%). Using this method, the ancestral distribution at Y can be estimated to provide inference of the geographic origins of the specific crown group of interest. This approach takes into account phylogenetic uncertainty as well as uncertainty from DIVA optimization. It is an extension of the previously described method called Bayes-DIVA, which pairs Bayesian phylogenetic analysis with biogeographic analysis using DIVA. Further, we show that the probability P of an ancestral range at Y calculated using this method does not equate to pp* F(rY) on the Bayesian consensus tree when both variables are < 100%, where pp is the posterior probability and F(rY) is the frequency of range r for the node containing the specific crown group. We tested our DIVA-Bayes approach using Aesculus L., which has major lineages unresolved as a polytomy. We inferred the most probable geographic origins of the five traditional sections of Aesculus and ofAesculus californica Nutt. and examined range subdivisions at parental nodes of these lineages.Additionally, we used the DIVA-Bayes data from Aesculus to quantify the effects on biogeographic inference of including two wildcard fossil taxa in phylogenetic analysis. Our analysis resolved the

  12. CRED 20 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (20 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  13. CRED 5 m Gridded bathymetry of Baker Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Baker Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  14. CRED 5 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  15. CRED 40 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  16. CRED 5 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  17. CRED 5 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  18. CRED 40 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  19. CRED 5 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (5 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  20. CRED 20 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (20 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  1. CRED 40 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  2. CRED 40 m Gridded bathymetry of Baker Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the shelf and slope environments of Baker Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  3. CRED 20 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (20 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  4. CRED 5 m Gridded bathymetry of Baker Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Baker Island, Pacific Remote Isand Areas, Central Pacific. Almost complete bottom coverage...

  5. CRED 5 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  6. CRED 5 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  7. CRED 5 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (5 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  8. CRED 20 m Gridded bathymetry of Kingman Reef, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (20 m cell size) bathymetry of the lagoon, shelf and slope environments of Kingman Reef, Pacific Remote Island Areas, Central Pacific. Almost complete...

  9. CRED 5 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  10. CRED 5 m Gridded bathymetry of Kingman Reef, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the lagoon, shelf and slope environments of Kingman Reef, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  11. CRED 40 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  12. CRED 20 m Gridded bathymetry of Kingman Reef, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (20 m cell size) bathymetry of the lagoon, shelf and slope environments of Kingman Reef, Pacific Remote Island Areas, Central Pacific. Almost complete...

  13. CRED 5 m Gridded bathymetry of Kingman Reef, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the lagoon, shelf and slope environments of Kingman Reef, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  14. CRED Reson 8101 multibeam backscatter data of Jarvis Island, Pacific Remote Island Areas, Central Pacific in netCDF format

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the shelf and slope environments of Jarvis Atoll, Pacific Island Areas, Central Pacific. These...

  15. CRED Reson 8101 multibeam backscatter data of Jarvis Island, Pacific Remote Island Areas, Central Pacific in GeoTIFF format

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the shelf and slope environments of Jarvis Atoll, Pacific Island Areas, Central Pacific. These...

  16. CRED Reson 8101 multibeam backscatter data of Howland Island, Pacific Remote Island Areas, Central Pacific in GeoTIFF format

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the shelf and slope environments of Howland Atoll, Pacific Island Areas, Central Pacific. These...

  17. THE FUTURE OF PACIFIC NORTHWEST SALMON: ANATOMY OF A CRISIS

    Science.gov (United States)

    Salmon are categorized biologically into two groups: Pacific salmon or Atlantic salmon. All seven species of Pacific salmon on both sides of the North Pacific Ocean have declined substantially from historic levels, but large runs still occur in northern British Columbia, Yukon,...

  18. 76 FR 24465 - Pacific Gas and Electric Company

    Science.gov (United States)

    2011-05-02

    ... Energy Regulatory Commission Pacific Gas and Electric Company Notice of Application Tendered for Filing....: 2310-193. c. Date Filed: April 12, 2011. d. Applicant: Pacific Gas and Electric Company. e. Name of... Contact: Steve Peirano, Relicensing Project Manager, Pacific Gas and Electric Company, P.O. Box...

  19. Pacific Flyway management plan for the Pacific Flyway Population of greater white-fronted geese

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — For the purposes of this management plan, the greater white-fronted goose subspecies (Anseralbifrons frontalis) occurring in the Pacific Flyway is termed the...

  20. 76 FR 28422 - Fisheries of the Pacific Region; Western Pacific Region

    Science.gov (United States)

    2011-05-17

    ... Administration (NOAA), Commerce. ACTION: Notification of determination of overfishing or an overfished condition... Fishery Management Council (Western Pacific Council), is subject to overfishing. NMFS notifies the appropriate fishery management council (Council) whenever it determines that; overfishing is occurring,...

  1. Dynamic Linkage between the North Pacific and the Tropical Pacific: Atmosphere-Ocean Coupling

    Institute of Scientific and Technical Information of China (English)

    LI Chun; WU Lixin

    2013-01-01

    In this study,dynamic linkage of atmosphere-ocean coupling between the North Pacific and the tropical Pacific was demonstrated using a large number of ensemble perturbed initial condition experiments in a fully coupled fast ocean-atmosphere model (FOAM).In the FOAM model,an idealized mixed layer warming was initiated in the Kuroshio-Oyashio extension region,while the ocean and atmosphere remained fully coupled both locally and elsewhere.The modeling results show that the warm anomalies are associated with anomalous cyclonic winds,which induce initial warming anomalies extending downstream in the following winter.Then,the downstream warming spreads southwestward and induces SST warming in the equatorial Pacific via surface wind-evaporation-SST feedback.Warming in the tropical Pacific is further reinforced by Bjerknes' feedback.

  2. SCIENCE, POLITICS, AND PACIFIC NORTHWEST SALMON RECOVERY

    Science.gov (United States)

    Throughout the Pacific Northwest, since 1850, all wild salmon runs have declined and some have disappeared. Billions of dollars have been spent in a so-far failed attempt to reverse the long-term decline. Each year, hundreds of millions of dollars continue to be spent in variou...

  3. Biogeographic congruence in the south Pacific

    DEFF Research Database (Denmark)

    Seberg, Ole

    1991-01-01

    Ever since J. D. Hooker's famous 'Introductory Essay' to Flora NOVE-Zelandise, a classical problem in biogeography has been to give a casual explanation of southern hemisphere distribution patterns. An attempt is made to see whether the cladograms for the circum-Pacific areas (South America, New...

  4. Pacific Island rugby: Histories, mobilities, comparisons

    NARCIS (Netherlands)

    N. Besnier

    2014-01-01

    The migration of rugby players from Fiji and neighbouring Pacific Island nations poses fundamental questions about the way in which sport is embedded in historical, political, social and global dynamics, all of which give specific meanings to sports and those who play it. An approach that bestows a

  5. The Third Pacific Basin Biofuels Workshop: Proceedings

    Science.gov (United States)

    Among the many compelling reasons for the development of biofuels on remote Pacific islands, several of the most important include: (1) a lack of indigenous fossil fuels necessitates their import at great economic loss to local island economics, (2) ideal conditions for plant growth exist on many Pacific islands to produce yields of biomass feedstocks, (3) gaseous and liquid fuels such as methane, methanol and ethanol manufactured locally from biomass feedstocks are the most viable alternatives to gasoline and diesel fuels for transportation, and (4) the combustion of biofuels is cleaner than burning petroleum products and contributes no net atmospheric CO2 to aggravate the greenhouse effect and the subsequent threat of sea level rise to low islands. Dr. Vic Phillips, HNEI Program Manager of the Hawaii Integrated Biofuels Research Program welcomed 60 participants to the Third Pacific Basin Biofuels Workshop at the Sheraton Makaha Hotel, Waianae, Oahu, on March 27 and 28, 1989. The objectives of the workshop were to update progress since the Second Pacific Basin Biofuels Workshop in April 1987 and to develop a plan for action for biofuels R and D, technology transfer, and commercialization now (immediate attention), in the near-term (less than two years), in the mid-term (three to five years), and in the long-term (more than six years). An emerging theme of the workshop was how the production, conversion, and utilization of biofuels can help increase environmental and economic security locally and globally. Individual papers are processed separately for the data base.

  6. Loading up Asia-Pacific style

    Energy Technology Data Exchange (ETDEWEB)

    Keith, A.; Johnson, R. [PT Connell Wagner, Jakarta (Indonesia)

    2003-10-01

    Coal shiploading ports dot the coastlines of many parts of the Asia Pacific region, being the nodes where inland transportation and sea transportation meet. The article is based on a paper entitled 'Overview of Asia's shiploading ports and transhipment operation for coal' presented at Coaltrans Asia in June 2003. 1 fig., 4 photos.

  7. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    Alexandra Bagley; Usman H Malabu

    2014-01-01

    Two-third of the world’s population lives in the Asia Pacific region where prevalence of diabetes has reached epidemic proportion. With China and India being the most populous nations on the globe, it is believed that over 150 million diabetes reside in the region with more than 95% being of type 2 diabetes mellitus (T2DM). Furthermore, other Pacific islands in the region have high rates of T2DM including Tonga, Fiji, French Polynesia, and Nauru. The latter has the highest prevalence of T2DM per population in the world. Over the past two decades, in Australia and New Zealand, the prevalence of T2DM has more than doubled, mainly amongst the Aboriginal and Torres Strait Islander and Maori peoples respectively. With the increasing prevalence of diabetes in the Asia Pacific region coupled with the limited number of resources, use of a reliable and effective mode of diagnosis for T2DM is warranted. Yet to date, only New Zealand has adopted the American Diabetes Association recommendation of using hemoglobin A1C in the diagnosis of the disease. The aim of this review is to discuss the clinical usefulness of hemoglobin A1C and highlight its diagnostic role in the Asia Pacific region where T2DM is increasingly encountered.

  8. Asian Pacific American Women's Health Concerns.

    Science.gov (United States)

    Pian, Canta

    This paper discusses the adjustment and acculturation problems of Asian Pacific American women and how these problems relate to their health concerns. Information presented in the article is based on the observations of health service providers to the Asian community. The paper suggests that the diversity of Asian Americans (age, ethnic group, and…

  9. Establishing bioinformatics research in the Asia Pacific

    Directory of Open Access Journals (Sweden)

    Tammi Martti

    2006-12-01

    Full Text Available Abstract In 1998, the Asia Pacific Bioinformatics Network (APBioNet, Asia's oldest bioinformatics organisation was set up to champion the advancement of bioinformatics in the Asia Pacific. By 2002, APBioNet was able to gain sufficient critical mass to initiate the first International Conference on Bioinformatics (InCoB bringing together scientists working in the field of bioinformatics in the region. This year, the InCoB2006 Conference was organized as the 5th annual conference of the Asia-Pacific Bioinformatics Network, on Dec. 18–20, 2006 in New Delhi, India, following a series of successful events in Bangkok (Thailand, Penang (Malaysia, Auckland (New Zealand and Busan (South Korea. This Introduction provides a brief overview of the peer-reviewed manuscripts accepted for publication in this Supplement. It exemplifies a typical snapshot of the growing research excellence in bioinformatics of the region as we embark on a trajectory of establishing a solid bioinformatics research culture in the Asia Pacific that is able to contribute fully to the global bioinformatics community.

  10. Changing housing policy landscapes in Asia Pacific

    NARCIS (Netherlands)

    R. Ronald; R.L.H. Chiu

    2010-01-01

    The Asia Pacific region, and in particular East Asia, underwent rapid urbanisation and industrialisation in the latter decades of the twentieth century. Central to this transformation was intensive public and private investment in the housing sector. Although housing was largely commodified, public

  11. Use of ICT in Education in the South Pacific: Findings of the Pacific eLearning Observatory

    Science.gov (United States)

    Whelan, Robert

    2008-01-01

    The Pacific eLearning Observatory at the University of the South Pacific (USP) conducted an online survey of educational technologists (n = 60) to assess levels of access to information and communication technologies (ICT) in education and identify ways of lowering the barriers to ICT in the Pacific region. Almost half of USP's 22,000 students are…

  12. [Costa Rica mangroves: the north Pacific].

    Science.gov (United States)

    Zamora-Trejos, Priscilla; Cortés, Jorge

    2009-09-01

    Costa Rica has mangrove forests on both the Caribbean and Pacific coasts. The Pacific side has 99% of the mangrove area of the country. In this review we compile available information on the mangroves of the north Pacific coast of Costa Rica, from Bahía Salinas, on the border with Nicaragua, to the tip of the Peninsula de Nicoya at Cabo Blanco. We provide information on the location of the mangroves and all available information for each mangrove forest. These mangrove communities are smaller in extension and tree sizes, and have lower diversity compared to the mangroves on the southern section of the Pacific coast of Costa Rica. The dominant species are Rhizophora mangle and Rhizophora racemosa along the canal edges, backed by Avicennia germinans, and farther inland Avicennia bicolor, Laguncularia racemosa and Conocarpus erectus. At Potrero Grande a healthy population of Pelliciera rhizophorae, a rare species, has been reported. We recognized 38 mangrove communities in this part of the country, based on the National Wetland Inventory, published papers, field observations, theses, technical reports, and the national topographic maps (1:50,000, Instituto Geográfico Nacional). Relatively detailed information could be found for only five mangrove forests, for 14 more only prelimary and incomplete lists of plants and in some cases of animal species are available, for nine there is even less information, and for nine more only their location is known, which in some cases was not correct. Detail mapping, characterization of the vegetation and fauna, physiological studies, analyses of biogeochemical and physical processes, economic valuations, and determination of the health status of the mangrove of the northern Pacific coast, as well as for the rest of Costa Rica, are neccesary and urgent. PMID:19928448

  13. Pacific Lamprey Research and Restoration : Annual Report 1997.

    Energy Technology Data Exchange (ETDEWEB)

    Jackson, Aaron D.; Hatch, Douglas R.; Close, David A.

    1998-08-05

    The once abundant stocks of Pacific lamprey (Lampetra tridentata) above Bonneville Dam are currently depressed (Close et al. 1995). It is likely that many of the same factors that led to the decline of wild stocks of Columbia River Pacific salmon and steelhead have impacted Pacific lamprey populations as well. The Pacific Lamprey Research and Restoration Project, funded by Bonneville Power Administration, is a cooperative effort between the Confederated Tribes of the Umatilla Indian Reservation, the Columbia River Inter-Tribal Fish Commission, and Oregon State University with the goal to increase Pacific lamprey stocks above Bonneville Dam.

  14. Paradise Found China's cooperation with Pacific island countries bears fruit

    Institute of Scientific and Technical Information of China (English)

    WANG ZHENYU

    2011-01-01

    China pledges to be a constructive force in the Pacific region and help Pacific island countries achieve sustainable development,said Chinese Vice Foreign Minister Cui Tiankai while attending the Post-Forum Dialogue of the 23rd Pacific Islands Forum (P1F) Leaders Meeting in Auckland,New Zealand,in early September.PIF countries have made remarkable progress in their economic and social development since the forum was established four decades ago.In 2005,PIF leaders adopted the Pacific Plan,which gave a boost to Pacific regional integration and cooperation.

  15. Climate Variability and Phytoplankton in the Pacific Ocean

    Science.gov (United States)

    Rousseaux, Cecile

    2012-01-01

    The effect of climate variability on phytoplankton communities was assessed for the tropical and sub-tropical Pacific Ocean between 1998 and 2005 using an established biogeochemical assimilation model. The phytoplankton communities exhibited wide range of responses to climate variability, from radical shifts in the Equatorial Pacific, to changes of only a couple of phytoplankton groups in the North Central Pacific, to no significant changes in the South Pacific. In the Equatorial Pacific, climate variability dominated the variability of phytoplankton. Here, nitrate, chlorophyll and all but one of the 4 phytoplankton types (diatoms, cyanobacteria and coccolithophores) were strongly correlated (pclimate variability can play in ocean biology.

  16. RELATIVE MOTION AND DEFORMATION OF PACIFIC PLATE FROM SPACE GEODESY

    Institute of Scientific and Technical Information of China (English)

    JinShuanggen; ZhuWenyao

    2003-01-01

    The circum-Pacific tectonic system that contains of convergent, divergent and transform boundaries, is the most active region of volcanoes and earthquakes in the world, and involves many important theoretical questions in geosciences. The relative motion and deformation of Pacific plate is still an active subject of research. In this note, we analyze the deformation of Pacific plate and obtain reliable results of the relative motion rates at the circum-Pacific boundaries based on space geodetic data, which reveals the present-day motion characteristics of Pacific plate.

  17. Indo-Pacific: Origin and Multinational Strategic Game-play

    Institute of Scientific and Technical Information of China (English)

    WU; Zhaoli

    2014-01-01

    In recent years, the United States, Australia and India have initiated the Indo-Pacific concept,which is not a simple result of the Indian Ocean plus the Pacific Ocean, but a geo-economic and geo-political development of the two regions.Indo-Pacific reflects the shift of the global economic gravity and strategic center,and the China factor is obvious in this process.The extending Chinese strategic interests are beyond the traditional Asia-Pacific region, but China as a typical Indo-Pacific country should be cautious about the "selective exclusion"and "targeted promotion"

  18. Tectonic map of the Circum-Pacific region, Pacific basin sheet

    Science.gov (United States)

    Scheibner, E.; Moore, G.W.; Drummond, K.J.; Dalziel, Corvalan Q.J.; Moritani, T.; Teraoka, Y.; Sato, T.; Craddock, C.

    2013-01-01

    Circum-Pacific Map Project: The Circum-Pacific Map Project was a cooperative international effort designed to show the relationship of known energy and mineral resources to the major geologic features of the Pacific basin and surrounding continental areas. Available geologic, mineral, and energy-resource data are being complemented by new, project-developed data sets such as magnetic lineations, seafloor mineral deposits, and seafloor sediment. Earth scientists representing some 180 organizations from more than 40 Pacific-region countries are involved in this work. Six overlapping equal-area regional maps at a scale of 1:10,000,000 form the cartographic base for the project: the four Circum-Pacific Quadrants (Northwest, Southwest, Southeast, and Northeast), and the Antarctic and Arctic Sheets. There is also a Pacific Basin Sheet at a scale of 1:17,000,000. The Base Map Series and the Geographic Series (published from 1977 to 1990), the Plate-Tectonic Series (published in 1981 and 1982), the Geodynamic Series (published in 1984 and 1985), and the Geologic Series (published from 1984 to 1989) all include six map sheets. Other thematic map series in preparation include Mineral-Resources, Energy-Resources and Tectonic Maps. Altogether, more than 50 map sheets are planned. The maps were prepared cooperatively by the Circum-Pacific Council for Energy and Mineral Resources and the U.S. Geological Survey and are available from the Branch of Distribution, U. S. Geological Survey, Box 25286, Federal Center, Denver, Colorado 80225, U.S.A. The Circum-Pacific Map Project is organized under six panels of geoscientists representing national earth-science organizations, universities, and natural-resource companies. The six panels correspond to the basic map areas. Current panel chairmen are Tomoyuki Moritani (Northwest Quadrant), R. Wally Johnson (Southwest Quadrant), Ian W.D. Dalziel (Antarctic Region), vacant. (Southeast Quadrant), Kenneth J. Drummond (Northeast Quadrant), and

  19. Provenance, volcanic record, and tectonic setting of the Paleozoic Ventania Fold Belt and the Claromecó Foreland Basin: Implications on sedimentation and volcanism along the southwestern Gondwana margin

    Science.gov (United States)

    Alessandretti, Luciano; Philipp, Ruy Paulo; Chemale, Farid; Brückmann, Matheus Philipe; Zvirtes, Gustavo; Matté, Vinícius; Ramos, Victor A.

    2013-11-01

    This study focuses on the provenance, volcanic record, and tectonic setting of the Paleozoic Ventania System, a geologic province which comprises the Cambro-Devonian Ventania Fold Belt and the adjoining Permo-Carboniferous Claromecó Foreland Basin, located inboard the deformation front. The Ventania Fold Belt is formed of the Curamalal and Ventana groups, which are composed mainly of mature quartzites that were unconformably deposited on igneous and metamorphic basement. The Pillahuincó Group is exposed as part of the Claromecó Basin and it has lithological and structural features totally distinct from the lowermost groups. This group is composed of immature arkoses and subarkoses with intercalated tuff horizons, unconformably overlaying the quartzites and associated with glacial-marine deposits of the lower Late Carboniferous to Early Permian section. The petrography, as well as major and trace elements (including rare earth elements) support that the Ventania quartzites were derived from cratonic sources and deposited in a passive margin environment. For the Pillahuincó Group, we suggest a transition between rocks derived from and deposited in a passive margin environment to those with geochemical and petrographical signatures indicative of an active continental margin provenance. LA-MC-ICP-MS analysis performed on euhedral and prismatic zircon grains of the tuffs revealed an age of 284 ± 15 Ma. The geochemical fingerprints and geochronological data of the tuffs found in the Claromecó Basin support the presence of an active and widespread Lower Permian pyroclastic activity in southwestern Gondwana, which is interpreted as part of the Choiyoi Volcanic Province in Argentina and Chile.

  20. Detection of "punctuated equilibrium" by bayesian estimation of speciation and extinction rates, ancestral character states, and rates of anagenetic and cladogenetic evolution on a molecular phylogeny.

    Science.gov (United States)

    Bokma, Folmer

    2008-11-01

    Algorithms are presented to simultaneously estimate probabilities of speciation and extinction, rates of anagenetic and cladogenetic phenotypic evolution, as well as ancestral character states, from a complete ultrametric species-level phylogeny with dates assigned to all bifurcations and one or more phenotypes in three or more extant species, using Metropolis-Hastings Markov Chain Monte Carlo sampling. The algorithms also estimate missing phenotypes of extant species and numbers of speciation events that occurred on all branches of the phylogeny. The algorithms are discussed and their performance is evaluated using simulated data. That evaluation shows that precise estimation of rates of evolution of one or a few phenotypes requires large phylogenies. Estimation accuracy improves with the number of species on the phylogeny. PMID:18752617

  1. Mating animals by minimising the covariance between ancestral contributions generates less inbreeding without compromising genetic gain in breeding schemes with truncation selection

    DEFF Research Database (Denmark)

    Henryon, M; Berg, P; Sørensen, A C

    2009-01-01

    We reasoned that mating animals by minimising the covariance between ancestral contributions (MCAC mating) will generate less inbreeding and at least as much genetic gain as minimum-coancestry mating in breeding schemes where the animals are truncation-selected. We tested this hypothesis...... by stochastic simulation and compared the mating criteria in hierarchical and factorial breeding schemes, where the animals were selected based on breeding values predicted by animal-model BLUP. Random mating was included as a reference-mating criterion. We found that MCAC mating generated 4% to 8% less...... they can be achieved without extra costs or practical constraints. MCAC mating merely uses pedigree information to pair the animals more appropriately and is clearly a worthy alternative to minimum-coancestry mating and probably any other mating criterion. We believe, therefore, that MCAC mating should...

  2. 济南市闵子骞祠堂东汉墓%Eastern Han Tomb in the Min Ziqian Ancestral Temple in Jinan City

    Institute of Scientific and Technical Information of China (English)

    济南市考古研究所

    2004-01-01

    In 2000, the Jinan Municipal Institute of Archaeology carried out a rescuing excavation to explore a tomb in the Min Ziqian ancestral temple, Jinan City. The grave is built of brick and stone, consists of an anterior, a middle, a back and two side rooms, and has a "凸"-shaped plan. It has been seriously robbed, but still above 60 pottery objects and copper coins are left over from the grave goods. Among them pottery domestic fowls and animals come first in number, and four pictorial stones remain in the tomb. The tomb shape, the features of the objects and those of the pictorial stones suggest that the burial belongs to the late Eastern Han period.

  3. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species.

    Directory of Open Access Journals (Sweden)

    Michael B Walker

    Full Text Available Arrangements of genes along chromosomes are a product of evolutionary processes, and we can expect that preferable arrangements will prevail over the span of evolutionary time, often being reflected in the non-random clustering of structurally and/or functionally related genes. Such non-random arrangements can arise by two distinct evolutionary processes: duplications of DNA sequences that give rise to clusters of genes sharing both sequence similarity and common sequence features and the migration together of genes related by function, but not by common descent. To provide a background for distinguishing between the two, which is important for future efforts to unravel the evolutionary processes involved, we here provide a description of the extent to which ancestrally related genes are found in proximity.Towards this purpose, we combined information from five genomic datasets, InterPro, SCOP, PANTHER, Ensembl protein families, and Ensembl gene paralogs. The results are provided in publicly available datasets (http://cgd.jax.org/datasets/clustering/paraclustering.shtml describing the extent to which ancestrally related genes are in proximity beyond what is expected by chance (i.e. form paraclusters in the human and nine other vertebrate genomes, as well as the D. melanogaster, C. elegans, A. thaliana, and S. cerevisiae genomes. With the exception of Saccharomyces, paraclusters are a common feature of the genomes we examined. In the human genome they are estimated to include at least 22% of all protein coding genes. Paraclusters are far more prevalent among some gene families than others, are highly species or clade specific and can evolve rapidly, sometimes in response to environmental cues. Altogether, they account for a large portion of the functional clustering previously reported in several genomes.

  4. Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin.

    Science.gov (United States)

    Bowie, Rauri C K; Fjeldså, Jon; Hackett, Shannon J; Bates, John M; Crowe, Timothy M

    2006-01-01

    Although many studies have documented the effect of glaciation on the evolutionary history of Northern Hemisphere flora and fauna, this study is the first to investigate how the indirect aridification of Africa caused by global cooling in response to glacial cycles at higher latitudes has influenced the evolutionary history of an African montane bird. Mitochondrial DNA sequences from the NADH 3 gene were collected from 283 individual Starred Robins (Pogonocichla stellata, Muscicapoidea). At least two major vicariant events, one that separated the Albertine Rift from all but the Kenyan Highlands around 1.3-1.2 Myrs BP, and another that separated the Kenyan Highlands from the northern Eastern Arc, and the northern Eastern Arc from the south-central Eastern Arc between 0.9 and 0.8 Myrs BP appear to underlie much of the observed genetic diversity and structure within Starred Robin populations. These dates of divergence suggest a lack of recurrent gene flow; although the Albertine Rift and south-central Eastern Arc share haplotypes, based on coalescent analyses this can confidently be accounted for by ancestral polymorphism as opposed to recurrent gene flow. Taken collectively, strong evidence exists for recognition of four major ancestral populations: (1) Kenyan Highlands (subspecies keniensis), (2) Albertine Rift (ruwenzori), (3) northern Eastern Arc (helleri), and (4) south-central Eastern Arc, Ufipa and the Malawi Rift (orientalis). The estimated divergence times cluster remarkably around one of the three estimated peaks of aridification in Africa during the Plio-Pleistocene centred on 1 Myrs BP. Further, time to most recent common ancestor (TMRCA) estimates (1.7-1.6 Myrs BP) of gene divergence between the Albertine Rift and the other montane highlands corresponds closely with a second estimated peak of aridification at about 1.7 Myrs BP. Collectively, these results suggest that aridification of Africa in response to glaciation at higher latitudes during the

  5. Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity.

    Science.gov (United States)

    Spreadbury, Ian

    2012-01-01

    A novel hypothesis of obesity is suggested by consideration of diet-related inflammation and evolutionary medicine. The obese homeostatically guard their elevated weight. In rodent models of high-fat diet-induced obesity, leptin resistance is seen initially at vagal afferents, blunting the actions of satiety mediators, then centrally, with gastrointestinal bacterial-triggered SOCS3 signaling implicated. In humans, dietary fat and fructose elevate systemic lipopolysaccharide, while dietary glucose also strongly activates SOCS3 signaling. Crucially however, in humans, low-carbohydrate diets spontaneously decrease weight in a way that low-fat diets do not. Furthermore, nutrition transition patterns and the health of those still eating diverse ancestral diets with abundant food suggest that neither glycemic index, altered fat, nor carbohydrate intake can be intrinsic causes of obesity, and that human energy homeostasis functions well without Westernized foods containing flours, sugar, and refined fats. Due to being made up of cells, virtually all "ancestral foods" have markedly lower carbohydrate densities than flour- and sugar-containing foods, a property quite independent of glycemic index. Thus the "forgotten organ" of the gastrointestinal microbiota is a prime candidate to be influenced by evolutionarily unprecedented postprandial luminal carbohydrate concentrations. The present hypothesis suggests that in parallel with the bacterial effects of sugars on dental and periodontal health, acellular flours, sugars, and processed foods produce an inflammatory microbiota via the upper gastrointestinal tract, with fat able to effect a "double hit" by increasing systemic absorption of lipopolysaccharide. This model is consistent with a broad spectrum of reported dietary phenomena. A diet of grain-free whole foods with carbohydrate from cellular tubers, leaves, and fruits may produce a gastrointestinal microbiota consistent with our evolutionary condition, potentially

  6. The impact of ancestral heath management on soils and landscapes. A reconstruction based on paleoecological analyses of soil records in the middle and southeast Netherlands.

    Science.gov (United States)

    van Mourik, Jan; Doorenbosch, Marieke

    2016-04-01

    The evolution of heath lands during the Holocene has been registered in various soil records . Paleoecological analyses of these records enable to reconstruct the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation, in addition on the forest degradation accelerated due to cultural activities like forest grazing, wood cutting and shifting cultivation. Heather plants invaded on degraded forest soils and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the Late Neolithic, the Bronze Age and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age people probably continued with cattle grazing on the heaths and plaggic agriculture until the Early Middle Ages. After 1000 AD two events affected the heaths. At first deforestation for the sale of wood resulted in the first regional extension of sand drifting and heath degradation. After that the introduction of the deep stable economy and heath sods digging resulted in acceleration of the rise of plaggic horizons, severe heath degradation and the second extension of sand drifting. At the end of the 19th century the heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into 'new' arable fields and forests and due to deep ploughing most soil archives were destroyed. Since 1980 AD, the remaining relicts of the ancestral heaths are

  7. X-Ray Crystal Structure of the Ancestral 3-Ketosteroid Receptor-Progesterone-Mifepristone Complex Shows Mifepristone Bound at the Coactivator Binding Interface

    Energy Technology Data Exchange (ETDEWEB)

    Colucci, Jennifer K.; Ortlund, Eric A. [Emory-MED

    2013-12-12

    Steroid receptors are a subfamily of nuclear receptors found throughout all metazoans. They are highly important in the regulation of development, inflammation, and reproduction and their misregulation has been implicated in hormone insensitivity syndromes and cancer. Steroid binding to SRs drives a conformational change in the ligand binding domain that promotes nuclear localization and subsequent interaction with coregulator proteins to affect gene regulation. SRs are important pharmaceutical targets, yet most SR-targeting drugs have off-target pharmacology leading to unwanted side effects. A better understanding of the structural mechanisms dictating ligand specificity and the evolution of the forces that created the SR-hormone pairs will enable the design of better pharmaceutical ligands. In order to investigate this relationship, we attempted to crystallize the ancestral 3-ketosteroid receptor (ancSR2) with mifepristone, a SR antagonist. Here, we present the x-ray crystal structure of the ancestral 3-keto steroid receptor (ancSR2)-progesterone complex at a resolution of 2.05 Å. This improves upon our previously reported structure of the ancSR2-progesterone complex, permitting unambiguous assignment of the ligand conformation within the binding pocket. Surprisingly, we find mifepristone, fortuitously docked at the protein surface, poised to interfere with coregulator binding. Recent attention has been given to generating pharmaceuticals that block the coregulator binding site in order to obstruct coregulator binding and achieve tissue-specific SR regulation independent of hormone binding. Mifepristone’s interaction with the coactivator cleft of this SR suggests that it may be a useful molecular scaffold for further coactivator binding inhibitor development.

  8. Conserved intron positions in FGFR genes reflect the modular structure of FGFR and reveal stepwise addition of domains to an already complex ancestral FGFR.

    Science.gov (United States)

    Rebscher, Nicole; Deichmann, Christina; Sudhop, Stefanie; Fritzenwanker, Jens Holger; Green, Stephen; Hassel, Monika

    2009-10-01

    We have analyzed the evolution of fibroblast growth factor receptor (FGFR) tyrosine kinase genes throughout a wide range of animal phyla. No evidence for an FGFR gene was found in Porifera, but we tentatively identified an FGFR gene in the placozoan Trichoplax adhaerens. The gene encodes a protein with three immunoglobulin-like domains, a single-pass transmembrane, and a split tyrosine kinase domain. By superimposing intron positions of 20 FGFR genes from Placozoa, Cnidaria, Protostomia, and Deuterostomia over the respective protein domain structure, we identified ten ancestral introns and three conserved intron groups. Our analysis shows (1) that the position of ancestral introns correlates to the modular structure of FGFRs, (2) that the acidic domain very likely evolved in the last common ancestor of triploblasts, (3) that splicing of IgIII was enabled by a triploblast-specific insertion, and (4) that IgI is subject to substantial loss or duplication particularly in quickly evolving genomes. Moreover, intron positions in the catalytic domain of FGFRs map to the borders of protein subdomains highly conserved in other serine/threonine kinases. Nevertheless, these introns were introduced in metazoan receptor tyrosine kinases exclusively. Our data support the view that protein evolution dating back to the Cambrian explosion took place in such a short time window that only subtle changes in the domain structure are detectable in extant representatives of animal phyla. We propose that the first multidomain FGFR originated in the last common ancestor of Placozoa, Cnidaria, and Bilateria. Additional domains were introduced mainly in the ancestor of triploblasts and in the Ecdysozoa. PMID:20016912

  9. 1999 Pacific Northwest Loads and Resources Study.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1999-12-01

    The Pacific Northwest Loads and Resources Study (White Book) is published annually by BPA and establishes the planning basis for supplying electricity to customers. It serves a dual purpose. First, the White Book presents projections of regional and Federal system load and resource capabilities, along with relevant definitions and explanations. Second, the White Book serves as a benchmark for annual BPA determinations made pursuant to its regional power sales contracts. Specifically, BPA uses the information in the White Book for determining the notice required when customers request to increase or decrease the amount of power purchased from BPA. The White Book will not be used in calculations for the 2002 regional power sales contract subscription process. The White Book compiles information obtained from several formalized resource planning reports and data submittals, including those from the Northwest Power Planning Council (Council) and the Pacific Northwest Utilities Conference Committee (PNUCC). The White Book is not an operational planning guide, nor is it used for determining BPA revenues. Operation of the Federal Columbia River Power System (FCRPS) is based on a set of criteria different from that used for resource planning decisions. Operational planning is dependent upon real-time or near-term knowledge of system conditions, including expectations of river flows and runoff, market opportunities, availability of reservoir storage, energy exchanges, and other factors affecting the dynamics of operating a power system. In this loads and resources study, resource availability is compared with a medium forecast of electricity consumption. The forecasted future electricity demands--firm loads--are subtracted from the projected capability of existing and ''contracted for'' resources to determine whether BPA and the region will be surplus or deficit. If Federal system resources are greater than loads in any particular year or month, there is

  10. 祠堂文化助力农村社区教育发展研究——基于三水祠堂文化活化视角%Research on How Ancestral Temple Culture Boost Rural Community Education Development—— Based on the New Concept of Sanshui Ancestral Temple Culture

    Institute of Scientific and Technical Information of China (English)

    李永霞

    2015-01-01

    With the development of rural urbanization, value of the rural ancestral temple was slowly highlighted. The traditional sense of the Ancestral temple′s functions such as social education, village autonomy in rural community governance is renewed. The highly fit of the Ancestral temple culture and the rural community education, with its confidence, inheritance, and liberty is helpful to the villagers′cultural consciousness and education consciousness. It is also helpful to the community autonomy, reshaping rural ethics and cultivating the spirit of the rural citizens. With the guidance of the government organizations at all levels, activating the ancestral temple culture and constructing the rural public cultural synthesis is not only an important way for the innovation of the rural education and the rural community governance model, but also the best performance of the new rural villagers′self-conscious to the traditional culture.%随着农村城镇化进程的深入,农村祠堂文化价值突显. 祠堂传统意义上的社会教化、村落自治功能在农村社区治理中重新焕发. 祠堂文化与农村社区教育的高度契合及其置信、传承、自主等优越性有助于村民文化自觉、教育自觉和社区自治,重塑农村伦理道德和培养农村公民精神. 各级政府部门组织引导社会各方力量,活化祠堂文化,积极构建农村公共文化教育综合体是创新农村社区教育和农村社区治理模式的重要途径,更是新农村村民对传统文化自觉的表现.

  11. Pacific Alliance as Counterpart to MERCOSUR

    OpenAIRE

    Skřička, Vojtěch

    2015-01-01

    This thesis focuses on two integration blocks in Latin America -- the Pacific Alliance and MERCOSUR. The analysis should confirm the hypothesis that the integrated countries converge faster than non-integrated. With use of beta-convergence and sigma-convergence approaches, this hypothesis was rejected for the two Latin American integration groups. It is also supposed that market-led policies should diverge from the protectionist countries in terms of per capita income. However, this hypothesi...

  12. Newborn screening in the Asia Pacific region.

    Science.gov (United States)

    Padilla, Carmencita D; Therrell, Bradford L

    2007-08-01

    The success of blood spot newborn screening in the USA led to early screening efforts in parts of the Asia Pacific Region in the mid-1960s. While there were early screening leaders in the region, many of the countries with depressed and developing economies are only now beginning organized screening efforts. Four periods of screening growth in the Asia Pacific region were identified. Beginning in the 1960s, blood spot screening began in New Zealand and Australia, followed by Japan and a cord blood screening programme for G6PD deficiency in Singapore. In the 1980s, established programmes added congenital hypothyroidism and new programmes developed in Taiwan, Hong Kong, China (Shanghai), India and Malaysia. Programmes developing in the 1990s built on the experience of others developing more rapidly in Korea, Thailand and the Philippines. In the 2000s, with limited funding support from the International Atomic Energy Agency, there has been screening programme development around detection of congenital hypothyroidism in Indonesia, Mongolia, Sri Lanka, Myanmar and Pakistan. Palau has recently contracted with the Philippine newborn screening programme. There is little information available on newborn screening activities in Nepal, Cambodia, Laos and the other Pacific Island nations, with no organized screening efforts apparent. Since approximately half of the births in the world occur in the Asia Pacific Region, it is important to continue the ongoing implementation and expansion efforts so that these children can attain the same health status as children in more developed parts of the world and their full potential can be realized.

  13. Assistance Focus: Asia/Pacific Region (Brochure)

    Energy Technology Data Exchange (ETDEWEB)

    2015-01-01

    The Clean Energy Solutions Center Ask an Expert service connects governments seeking policy information and advice with one of more than 30 global policy experts who can provide reliable and unbiased quick-response advice and information. The service is available at no cost to government agency representatives from any country and the technical institutes assisting them. This publication presents summaries of assistance provided to governments in the Asia/Pacific region, including the benefits of that assistance.

  14. PACIFIC NORTHWEST GRAIN GROWNERS' INCOME RISK MANAGEMENT

    OpenAIRE

    Ke, Bingfan; Wang, H. Holly

    2001-01-01

    In this paper, we identified the most desirable farm income risk management strategies for two rotation systems in the Pacific Nowthwest(PNW)area under a framework of expected utility maximization. Insurance programs available to PNW farmers and wheat futures market instruments are included in this study. The risk management effectiveness of each instrument and the substitute effect of revenue insurance programs on the combination of yield insurance and futures market are also evaluated.

  15. 2009 Hands Across Pacific Show Held

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    <正>The 2009 Hands Across the Pacific Show co-sponsored by the Canadian International Cultural Exchanges (CICEX) and Hunan Provincial People’s Association for Friendship with Foreign Countries(HPPAFFC) was held respectively in the Tower Hall of Tokyo,Japan from July 2 to 7 and in the Hunan Provincial Museum from August 1 to 5.Jing Dunquan,Vice President of the

  16. Epidemiology of Glaucoma in Asia-Pacific

    Institute of Scientific and Technical Information of China (English)

    P.Siva; Reddy

    1992-01-01

    Primary open angle glaucoma is the second most important cause of permanent blindness in the Asia Pacific region. Thus it is very important to identify epidemiological and other risk factore which are associated with open angle glaucoma. The risk for glaucoma optic nerve damage increases with the age and with the level of the intraocular pressure. In this paper, I will highlight our study of several risk factors for development of the open angle glaucoma like (1) elevated intraocular pressure, (2) myopi...

  17. The seven "oddities" of Pacific Odonata biogeography

    OpenAIRE

    Marinov, Milen

    2015-01-01

    The existing literature on the Odonata inhabiting the three large divisions of the Pacific Ocean (Micronesia, Melanesia, Polynesia) is revised taking into consideration earlier discussions on the species origin, historical faunistic records, various palaeogeographical models proposed for the area, general data on the biology and ecology of this insect order. Special emphasis is paid on the incomplete data set for the region and inconsistency of the exploration of this vast area. The taxonomy ...

  18. Market Quality of Pacific Northwest Pears

    OpenAIRE

    Gallardo, Rosa Karina; Kupferman, Eugene M.; Beaudry, Randolph M.; Blankenship, Sylvia M.; Mitcham, Elizabeth J; Watkins, Christopher B

    2011-01-01

    This study uses data collected from retail grocery chains during marketing season 2003-2004 to examine the external quality and price variations of Pacific Northwest pears. Quality refers to overall fruit appearance and presence of external disorders. Results from a bivariate probit model show that fruit weight and firmness had a positive effect on overall appearance. Results from a hedonic price model show that the recurrence of external disorders is not necessarily negatively correlated wit...

  19. Pacific Northern Gas Ltd. annual report 2002

    International Nuclear Information System (INIS)

    Pacific Northern Gas Ltd. operates in west-central and northeast British Columbia. The company delivers natural gas to customers through a transmission pipeline connected to Duke Energy system near Summit Lake, British Columbia. This report states that in 2002 financial results were disappointing. The company's net income in 2002 was lower than it was in 2001 ($4.6 million versus $5.7 million). In December 2002, Pacific Northern Gas Ltd. completed $15 million in financing. Additions to property, plant and equipment reached a total of $6 million in 2002. A new, seven-year contract with Methanex Corporation was successfully negotiated. Pacific Northern Gas Ltd. filed revenue requirements applications with the British Columbia Utilities Commission, seeking the Commission's approval of rates for 2003 and requesting approval of a new deferral account in all divisions. A settlement of the western system 2003 revenue requirements application was negotiated with its customers. The annual report presented a highlight of all activities, including corporate governance and management discussions and analysis. Consolidated financial statements were also provided. tabs

  20. Central Equatorial Pacific Experiment (CEPEX). Design document

    Energy Technology Data Exchange (ETDEWEB)

    1993-04-01

    The Earth`s climate has varied significantly in the past, yet climate records reveal that in the tropics, sea surface temperatures seem to have been remarkably stable, varying by less than a few degrees Celsius over geologic time. Today, the large warm pool of the western Pacific shows similar characteristics. Its surface temperature always exceeds 27{degree}C, but never 31{degree}C. Heightened interest in this observation has been stimulated by questions of global climate change and the exploration of stabilizing climate feedback processes. Efforts to understand the observed weak sensitivity of tropical sea surface temperatures to climate forcing has led to a number of competing ideas about the nature of this apparent thermostat. Although there remains disagreement on the processes that regulate tropical sea surface temperature, most agree that further progress in resolving these differences requires comprehensive field observations of three-dimensional water vapor concentrations, solar and infrared radiative fluxes, surface fluxes of heat and water vapor, and cloud microphysical properties. This document describes the Central Equatorial Pacific Experiment (CEPEX) plan to collect such observations over the central equatorial Pacific Ocean during March of 1993.

  1. Pacific Array (Transportable Broadband Ocean Floor Array)

    Science.gov (United States)

    Kawakatsu, Hitoshi; Ekstrom, Goran; Evans, Rob; Forsyth, Don; Gaherty, Jim; Kennett, Brian; Montagner, Jean-Paul; Utada, Hisashi

    2016-04-01

    Based on recent developments on broadband ocean bottom seismometry, we propose a next generation large-scale array experiment in the ocean. Recent advances in ocean bottom broadband seismometry1, together with advances in the seismic analysis methodology, have enabled us to resolve the regional 1-D structure of the entire lithosphere/asthenosphere system, including seismic anisotropy (azimuthal, and hopefully radial), with deployments of ~15 broadband ocean bottom seismometers (BBOBSs). Having ~15 BBOBSs as an array unit for a 2-year deployment, and repeating such deployments in a leap-frog way or concurrently (an array of arrays) for a decade or so would enable us to cover a large portion of the Pacific basin. Such efforts, not only by giving regional constraints on the 1-D structure beneath Pacific ocean, but also by sharing waveform data for global scale waveform tomography, would drastically increase our knowledge of how plate tectonics works on this planet, as well as how it worked for the past 150 million years. International collaborations is essential: if three countries/institutions participate this endeavor together, Pacific Array may be accomplished within five-or-so years.

  2. Heat flow in northwest Pacific marginal seas

    Institute of Scientific and Technical Information of China (English)

    JIANG Lili; LI Guanbao; LI Naisheng

    2004-01-01

    Heat flow studies in Northwest Pacific marginal seas has a more than 40 years history with more than 4000 heat flow values obtained. The regional average value is 80.4 mW/m2, which is lower than the world's 87 mW/m2, but higher than those of the Eurasia continent and the Pacific Ocean. This reflects the regional crust property in the area. The studies on distribution of the heat flow and contour pattern of heat flow in 1°×1°and 2°×2°scales in Northwest Pacific marginal seas revealed that the most high heat flow anomalies in the area were found along back-arc basins and island arc in an obviously northeasterly track. Exceptions are the Komandoskaya Basin (KMB), the Izu-Bonin Trough (IBT) and the Mariana Trough (MT), which extend in northwest. The contours of low heat flow marked the boundaries of the continent and the ocean. The present heat flow values reflect the imprint of the last thermal event and relate closely to tectonic activity. The high heat flow gradient areas have high frequency of earthquake. Therefore, the area of faulting controlled the pattern of the heat flow anomalies. Heat flow gradient in 135°direction indicated a major lithosphere transformation oceanward resulting from movement of the earth's material. In this paper, we described patterns of heat flow distribution in the Northwest Pacific, heat flow value changes in horizontal and vertical directions, combining the studies of Shi (1997) on the landforms of the island arcs in east Asia and plate movement, and the results of Shi and Zhang (1998) on heat simulation of subduction of active ocean mountain and the activity of islands arc. A preliminary model of geodynamics in the Northwest Pacific and its adjacent area was put forward. There is a great lateral heat flow gradient on the surface of the mantle between ocean and continent, which indicates that the materials in asthenosphere move from continent to ocean causing movement of the crust.

  3. The Analysis of the Architectural Characteristics of Yao' s Ancestral Hall in Xuanhan county, Dazhou city%达州市宣汉县姚氏宗祠建筑特点浅析

    Institute of Scientific and Technical Information of China (English)

    潘熙; 陈颖

    2012-01-01

    The ancestral temple, which was a product of patriarchal system, was not only worship space of the ancestor, but also a place for the whole family to deal with affairs. The unique shape of ancestral temple, caused by its functions, appears particularly prominent in a residential complex. The Yao ancestral hall analyzed in this article was built by the early Qing Dynasty immigrants, and kept its architectural form intact. Through the survey and mapping, we can better understand the architecture characteristics of Sichuan clan ancestral temples, as well as their social and cultural backgrounds.%祠堂,是宗法制度的产物,是家族祭祀祖先的场所,也是合族处理家族事务的地方。祠堂的功能使其具有独特的形制,在一片住宅群中,显得尤为突出。本文所分析的姚氏宗祠,为清初移民所修建,建筑形制保留较为完好。通过调研和测绘,有助于我们了解四川宗族祠堂建筑的特点,以及其产生的社会文化背景。

  4. Pacific Decadal Variability and Central Pacific Warming El Niño in a Changing Climate

    Energy Technology Data Exchange (ETDEWEB)

    Di Lorenzo, Emanuele

    2015-02-27

    This research aimed at understanding the dynamics controlling decadal variability in the Pacific Ocean and its interactions with global-scale climate change. The first goal was to assess how the dynamics and statistics of the El Niño Southern Oscillation and the modes of Pacific decadal variability are represented in global climate models used in the IPCC. The second goal was to quantify how decadal dynamics are projected to change under continued greenhouse forcing, and determine their significance in the context of paleo-proxy reconstruction of long-term climate.

  5. Northwestern Pacific typhoon intensity controlled by changes in ocean temperatures

    OpenAIRE

    Mei, Wei; Xie, Shang-Ping; Primeau, François; Mcwilliams, James C.; Pasquero, Claudia

    2015-01-01

    Dominant climatic factors controlling the lifetime peak intensity of typhoons are determined from six decades of Pacific typhoon data. We find that upper ocean temperatures in the low-latitude northwestern Pacific (LLNWP) and sea surface temperatures in the central equatorial Pacific control the seasonal average lifetime peak intensity by setting the rate and duration of typhoon intensification, respectively. An anomalously strong LLNWP upper ocean warming has favored increased intensificatio...

  6. Pacific Lamprey Research and Restoration : Annual Report 1996.

    Energy Technology Data Exchange (ETDEWEB)

    Jackson, Aaron D.

    1997-01-01

    The once abundant stocks of Pacific lamprey (Lampetra tridentata) above Bonneville Dam are currently depressed (Close et al. 1995). It is likely that many of the same factors that led to the decline of wild stocks of Columbia River Pacific salmon and steelhead have impacted Pacific lamprey populations. The Pacific lamprey is an important part of the food web of North Pacific ecosystems, both as predator and prey. Lamprey (a.k.a. eels) are also a valuable food and culture resource for American Indian Tribes of the Pacific Northwest. Depressed Pacific lamprey runs have impacted treaty secured fishing opportunities by forcing tribal members to gather this traditional food in lower Columbia River locations. The Pacific Lamprey Research and Restoration Project, funded by Bonneville Power Administration, is a cooperative effort between the Confederated Tribes of The Umatilla Indian Reservation, the Columbia River Intertribal Fish Commission, and Oregon State University with the goal to increase Pacific lamprey stocks above Bonneville Dam. The initial objectives of the project are to determine the past and current abundance of Pacific lamprey stocks in major mid Columbia tributaries and at various hydroelectric facilities, and to determine factors limiting Pacific lamprey abundance and distribution. Ultimately, Pacific lamprey restoration plans will be developed and implemented. Part (A)-CTUIR: (1) determine past and present abundance and distribution in NE Oregon and SE Washington tributaries; and (2) determine limiting habitat factors. Part (B)-CRITFC: (1) adult abundance monitoring at Columbia and Snake River dams; (2) juvenile abundance monitoring at Columbia and Snake River dams; and (3) juvenile passage impediments and needed improvements at Columbia and Snake River dams. Part (C)- OSU: (1) adult passage impediments and needed improvements at Columbia and Snake River dams; and (2) juvenile passage impediments and needed improvements at Columbia and Snake River dams.

  7. Preconditions for Sustainable Development of Pacific Russia Seaside Areas

    Institute of Scientific and Technical Information of China (English)

    P. Ya. Baklanov

    2011-01-01

    A geographical position and objective processes of globalization become leading factors of the orientation of the Russian east areas in the long-term development to interaction with the countries of the Asian-Pacific region (APR) and also to various natural resources and transport potential of the Pacific Ocean.In terms of economic-geographical attraction to the Pacific Ocean as a whole within Russia,it is possible to allocate three zones (Baklanov 2009):

  8. Epidemiologic update of dengue in the Western Pacific Region, 2010

    OpenAIRE

    Arima, Yuzo; Matsui, Tamano

    2011-01-01

    Dengue is an emerging vectorborne infectious disease that is a major public health concern in the Asia Pacific region. Official dengue surveillance data for 2010 provided by ministries of health were summarized as part of routine activities of the World Health Organization Regional Office for the Western Pacific. Based on reported data, dengue has continued to show an increasing trend in the Western Pacific Region. In 2010, countries and areas reported a total of 353 907 dengue cases, of whic...

  9. Blind to morphology: Genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia)

    KAUST Repository

    Pinzón, Jorge H C

    2013-04-05

    Aim: Using high-resolution genetic markers on samples gathered from across their wide distributional range, we endeavoured to delimit species diversity in reef-building Pocillopora corals. They are common, ecologically important, and widespread throughout the Indo-Pacific, but their phenotypic plasticity in response to environmental conditions and their nearly featureless microskeletal structures confound taxonomic assignments and limit an understanding of their ecology and evolution. Location: Indo-Pacific, Red Sea, Arabian/Persian Gulf. Methods: Sequence analysis of nuclear ribosomal (internal transcribed spacer 2, ITS2) and mitochondrial (open reading frame) loci were combined with population genetic data (seven microsatellite loci) for Pocillopora samples collected throughout the Indo-Pacific, Red Sea and Arabian Gulf, in order to assess the evolutionary divergence, reproductive isolation, frequency of hybridization and geographical distributions of the genus. Results: Between five and eight genetically distinct lineages comparable to species were identified with minimal or no hybridization between them. Colony morphology was generally incongruent with genetics across the full range of sampling, and the total number of species is apparently consistent with lower estimates from competing morphologically based hypotheses (about seven or eight taxa). The most commonly occurring genetic lineages were widely distributed and exhibited high dispersal and gene flow, factors that have probably minimized allopatric speciation. Uniquely among scleractinian genera, this genus contains a monophyletic group of broadcast spawners that evolved recently from an ancestral brooder. Main conclusions: The delineation of species diversity guided by genetics fundamentally advances our understanding of Pocillopora geographical distributions, ecology and evolution. Because traditional diagnostic features of colony and branch morphology are proving to be of limited utility, the

  10. Pacific western boundary currents and their roles in climate.

    Science.gov (United States)

    Hu, Dunxin; Wu, Lixin; Cai, Wenju; Gupta, Alex Sen; Ganachaud, Alexandre; Qiu, Bo; Gordon, Arnold L; Lin, Xiaopei; Chen, Zhaohui; Hu, Shijian; Wang, Guojian; Wang, Qingye; Sprintall, Janet; Qu, Tangdong; Kashino, Yuji; Wang, Fan; Kessler, William S

    2015-06-18

    Pacific Ocean western boundary currents and the interlinked equatorial Pacific circulation system were among the first currents of these types to be explored by pioneering oceanographers. The widely accepted but poorly quantified importance of these currents-in processes such as the El Niño/Southern Oscillation, the Pacific Decadal Oscillation and the Indonesian Throughflow-has triggered renewed interest. Ongoing efforts are seeking to understand the heat and mass balances of the equatorial Pacific, and possible changes associated with greenhouse-gas-induced climate change. Only a concerted international effort will close the observational, theoretical and technical gaps currently limiting a robust answer to these elusive questions. PMID:26085269

  11. Radio Spectrum Management in the Asia-Pacific Region

    Science.gov (United States)

    Tzioumis, T.

    2004-06-01

    The Asia-Pacific region comprises countries in ITU-R Region 3 from South and East Asia, Oceania and the Pacific islands, while excluding the Americas. Organizations in the Asia- Pacific region face special challenges in coping with the very diverse cultures and languages of the different nations. Telecommunications in each country are usually administered by a single National Communications Administration. These administrations participate in a number of regional umbrella organizations which promote cooperation in the development of communications in the Asia-Pacific. Those with relevance to radio astronomy are briefly oulined in this paper.

  12. 76 FR 71321 - North Pacific Fishery Management Council; Public Meetings

    Science.gov (United States)

    2011-11-17

    ... Operations and Procedures (SOPPs) review/approval and update on workshop with International Pacific Halibut... Service Report; Protected Species Report (including Steller Sea Lion (SSL) Center of Independent...

  13. 76 FR 2084 - North Pacific Fishery Management Council; Public Meetings

    Science.gov (United States)

    2011-01-12

    ... discussion paper and TRAWLEX report). Alaska Department of Fish & Game Report. International Pacific Halibut... Species Report (including update on Steller Sea Lion (SSL); Endangered Species Act (ESA) listed...

  14. Complementary innate (anti-A-specific) IgM emerging from ontogenic O-GalNAc-transferase depletion: (Innate IgM complementarity residing in ancestral antigen completeness).

    Science.gov (United States)

    Arend, Peter

    2014-04-01

    The murine and the human genome have global properties in common. So the murine anti-A-specific complementary IgM and related human innate isoagglutinin represent developmental, 2-mercaptoethanol-sensitive, complement-binding glycoproteins, which do not arise from any measurable environmentally-induced or auto- immune response. The murine anti-A certainly originates from a cell surface- or cell adhesion molecule, which in the course of germ cell development becomes devoid of O-GalNAc-transferase and is released into the circulation. In human sera the enzyme occurs exclusively in those of blood group A- and AB subjects, while in group O(H) an identically encoded protein lets expect an opposite function and appears in conjunction with a complementary anti-A reactive glycoprotein. Since O-glycosylations rule the carbohydrate metabolism in growth and reproduction processes, we propose that the ancestral histo-(blood)-group A molecule arises in the course of O-GalNAc-glycosylations of glycolipids and protein envelops at progenitor cell surfaces. Germ cell development postulates embryonic stem cell fidelity, which is characterised by persistent production of α-linked O-GalNAc-glycans. They are determined by the A-allele within the human, "complete" histo (blood) group AB(O) structure that in early ontogeny is hypothesised to be synthesised independently from the final phenotype. The structure either passes "completely" through the germline, in transferase-secreting mature tissues becoming the "complete" phenotype AB, or disappears in exhaustive glycotransferase depletion from the differentiating cell surfaces and leaves behind the "incomplete" blood group O-phenotype, which has released a transferase- and O-glycan-depleted, complementary glycoprotein (IgM) into the circulation. The process implies, that in humans the different blood phenotypes evolve from a "complete" AB(O) molecular complex in a distinct enzymatic and/or complement cascade suggesting O

  15. Collision-related Early Paleozoic evolution of a crustal fragment from the northern Gondwana margin (Slavonian Mountains, Tisia Mega-Unit, Croatia): Reconstruction of the P-T path, timing and paleotectonic implications

    Science.gov (United States)

    Balen, D.; Massonne, H.-J.; Petrinec, Z.

    2015-09-01

    An orthogneiss from the oldest metamorphic complex at Mt. Papuk (Tisia Mega-Unit, Croatia) enables the quantification of the P-T evolution of Early Paleozoic rocks of the Panonian Basin basement in contrast to neighboring peri-Gondwanan terrains which are significantly overprinted by pre-Variscan, Variscan, and Alpine events. Two different groups of Ce-rich monazite within oval-shaped corona microstructures have been observed. Age dating of the corona cores yielded two populations with average ages of 528 ± 7 (2σ) Ma and 465 ± 7 Ma, respectively. Furthermore, an Y-rich group, found inside garnet cores, was dated at 616 ± 23 Ma. Th-rich monazite included in garnet rims yielded an age of 491 ± 6 Ma. The youngest monazite group at 417 ± 20 Ma is located inside mica. The orthogneiss precursor was a calc-alkaline to high-K calc-alkaline igneous peraluminous crustal rock (diorite) from an active continental marginal setting. The calculated P-T pseudosection in the MnNCKFMASHTO system in combination with assemblage characteristics and mineral chemistry data provides good constraints on the P-T evolution: for stage I peak P-T conditions of 13 kbar and 670 °C were derived followed by stage II, which was characterized by moderate cooling accompanied by uplift to mid-crustal levels (5.2 kbar and 610 °C). Subsequently, the system cooled to 480 °C at ~ 4.4 kbar (stage III). Formation of titanite rims on ilmenite suggests further cooling to 4 kbar and 400 °C (stage IV). The clockwise P-T path implies exhumation from a tectonically thickened crustal setting (ca. 45 km depth at a geothermal gradient of ~ 15 °C/km) to mid-crustal levels (ca. 18 km) followed by cooling at depths < 14 km. Crustal thickening was due to the collision of a continental plate (Gondwana) with a smaller plate, which was underthrust.

  16. The impact of ancestral heath management on soils and landscapes: a reconstruction based on paleoecological analyses of soil records in the central and southeastern Netherlands

    Science.gov (United States)

    Doorenbosch, Marieke; van Mourik, Jan M.

    2016-07-01

    The evolution of heathlands during the Holocene has been registered in various soil records. Paleoecological analyses of these records enable reconstruction of the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation; in addition on that, the forest degradation accelerated due to cultural activities like forest grazing, wood cutting, and shifting cultivation. Heather plants invaded degraded forest soils, and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences, and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the late Neolithic, the Bronze Age, and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age, people probably continued with cattle grazing on the heaths and plaggic agriculture until the early Middle Ages. Severe forest degradation by the production of charcoal for melting iron during the Iron Age till the 6th-7th century and during the 11th-13th century for the trade of wood resulted in extensive sand drifting, a threat to the valuable heaths. The introduction of the deep, stable economy and heath sods digging in the course of the 18th century resulted in acceleration of the rise of plaggic horizons, severe heath degradation, and again extension of sand drifting. At the end of the 19th century heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into "new" arable fields and forests, and due to deep ploughing

  17. Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity

    Directory of Open Access Journals (Sweden)

    Spreadbury I

    2012-07-01

    Full Text Available Ian SpreadburyGastrointestinal Diseases Research Unit, Queen's University, Kingston, Ontario, CanadaAbstract: A novel hypothesis of obesity is suggested by consideration of diet-related inflammation and evolutionary medicine. The obese homeostatically guard their elevated weight. In rodent models of high-fat diet-induced obesity, leptin resistance is seen initially at vagal afferents, blunting the actions of satiety mediators, then centrally, with gastrointestinal bacterial-triggered SOCS3 signaling implicated. In humans, dietary fat and fructose elevate systemic lipopolysaccharide, while dietary glucose also strongly activates SOCS3 signaling. Crucially however, in humans, low-carbohydrate diets spontaneously decrease weight in a way that low-fat diets do not. Furthermore, nutrition transition patterns and the health of those still eating diverse ancestral diets with abundant food suggest that neither glycemic index, altered fat, nor carbohydrate intake can be intrinsic causes of obesity, and that human energy homeostasis functions well without Westernized foods containing flours, sugar, and refined fats. Due to being made up of cells, virtually all "ancestral foods" have markedly lower carbohydrate densities than flour- and sugar-containing foods, a property quite independent of glycemic index. Thus the "forgotten organ" of the gastrointestinal microbiota is a prime candidate to be influenced by evolutionarily unprecedented postprandial luminal carbohydrate concentrations. The present hypothesis suggests that in parallel with the bacterial effects of sugars on dental and periodontal health, acellular flours, sugars, and processed foods produce an inflammatory microbiota via the upper gastrointestinal tract, with fat able to effect a "double hit" by increasing systemic absorption of lipopolysaccharide. This model is consistent with a broad spectrum of reported dietary phenomena. A diet of grain-free whole foods with carbohydrate from cellular

  18. Place in Pacific Islands Climate Education

    Science.gov (United States)

    Barros, C.; Koh, M. W.

    2015-12-01

    Understanding place, including both the environment and its people, is essential to understanding our climate, climate change, and its impacts. For us to develop a sense of our place, we need to engage in multiple ways of learning: observation, experimentation, and opportunities to apply new knowledge (Orr, 1992). This approach allows us to access different sources of knowledge and then create local solutions for local issues. It is especially powerful when we rely on experts and elders in our own community along with information from the global community.The Pacific islands Climate Education Partnership (PCEP) is a collaboration of partners—school systems, nongovernmental organizations, and government agencies—working to support learning and teaching about climate in the Pacific. Since 2009, PCEP partners have been working together to develop and implement classroom resources, curriculum standards, and teacher professional learning opportunities in which learners approach climate change and its impacts first through the lens of their own place. Such an approach to putting place central to teaching and learning about climate requires partnership and opportunities for learners to explore solutions for and with their communities. In this presentation, we will share the work unfolding in the Republic of the Marshall Islands (RMI) as one example of PCEP's approach to place-based climate education. Three weeklong K-12 teacher professional learning workshops took place during June-July 2015 in Majuro, RMI on learning gardens, climate science, and project-based learning. Each workshop was co-taught with local partners and supports educators in teaching climate-related curriculum standards through tasks that can foster sense of place through observation, experimentation, and application of new knowledge. Additionally, we will also share PCEP's next steps in place-based climate education, specifically around emerging conversations about the importance of highlighting

  19. Leptospirosis in the Asia Pacific region

    Directory of Open Access Journals (Sweden)

    Coulombe Caroline

    2009-09-01

    Full Text Available Abstract Background Leptospirosis is a worldwide zoonotic infection that has been recognized for decades, but the problem of the disease has not been fully addressed, particularly in resource-poor, developing countries, where the major burden of the disease occurs. This paper presents an overview of the current situation of leptospirosis in the region. It describes the current trends in the epidemiology of leptospirosis, the existing surveillance systems, and presents the existing prevention and control programs in the Asia Pacific region. Methods Data on leptospirosis in each member country were sought from official national organizations, international public health organizations, online articles and the scientific literature. Papers were reviewed and relevant data were extracted. Results Leptospirosis is highly prevalent in the Asia Pacific region. Infections in developed countries arise mainly from occupational exposure, travel to endemic areas, recreational activities, or importation of domestic and wild animals, whereas outbreaks in developing countries are most frequently related to normal daily activities, over-crowding, poor sanitation and climatic conditions. Conclusion In the Asia Pacific region, predominantly in developing countries, leptospirosis is largely a water-borne disease. Unless interventions to minimize exposure are aggressively implemented, the current global climate change will further aggravate the extent of the disease problem. Although trends indicate successful control of leptospirosis in some areas, there is no clear evidence that the disease has decreased in the last decade. The efficiency of surveillance systems and data collection varies significantly among the countries and areas within the region, leading to incomplete information in some instances. Thus, an accurate reflection of the true burden of the disease remains unknown.

  20. The 1990 Western Pacific Geophysics meeting

    Science.gov (United States)

    The 1990 Western Pacific Geophysics Meeting was held in Kanazawa, Japan from 15-21 Aug. 1990. This was the first meeting of a new series of meetings for the American Geophysical Union, and it proved to be very successful in terms of the scientific program and attendance, which included over 1,000 participants. The intent of this meeting was an effort on the part of the American Geophysical Union (AGU) and several Japanese geophysical societies to gather individual Earth and space scientists at a major scientific meeting to focus on geophysical problems being studied in the western Pacific rim. The meeting was organized along the lines of a typical AGU annual meeting with some invited talks, many contributed talks, poster sessions, and with emphasis on presentations and informal discussions. The program committee consisted of scientists from both the U.S. and Japan. This meeting provided ample opportunities for U.S. and Japanese scientists to get to know each other and their works on a one-to-one basis. It was also a valuable opportunity for students studying geophysics to get together and interact with each other and with scientists from both the U.S. and Japan. There were 939 abstracts submitted to the conference and a total of 102 sessions designed as a result of the abstracts received. The topics of interest are as follows: space geodetic and observatory measurements for earthquake and tectonic studies; gravity, sea level, and vertical motion; variations in earth rotation and earth dynamics; sedimentary magnetism; global processes and precipitation; subsurface contaminant transport; U.S. Western Pacific Rim initiatives in hydrology; shelf and coastal circulation; tectonics, magmatism, and hydrothermal processes; earthquake prediction and hazard assessment; seismic wave propagation in realistic media; and dynamics and structure of plate boundaries and of the Earth's deep interior.

  1. Flexure and rheology of Pacific oceanic lithosphere

    Science.gov (United States)

    Hunter, Johnny; Watts, Tony

    2016-04-01

    The idea of a rigid lithosphere that supports loads through flexural isostasy was first postulated in the late 19th century. Since then, there has been much effort to investigate the spatial and temporal variation of the lithosphere's flexural rigidity, and to understand how these variations are linked to its rheology. We have used flexural modelling to first re-assess the variation in the rigidity of oceanic lithosphere with its age at the time of loading, and then to constrain mantle rheology by testing the predictions of laboratory-derived flow laws. A broken elastic plate model was used to model trench-normal, ensemble-averaged profiles of satellite-derived gravity at the trench-outer rise system of circum-Pacific subduction zones, where an inverse procedure was used to find the best-fit Te and loading conditions. The results show a first-order increase in Te with plate age, which is best fit by the depth to the 400 ± 35°C plate-cooling isotherm. Fits to the observed gravity are significantly improved by an elastic plate that weakens landward of the outer rise, which suggests that bending-induced plate weakening is a ubiquitous feature of circum-Pacific subduction zones. Two methods were used to constrain mantle rheology. In the first, the Te derived by modelling flexural observations was compared to the Te predicted by laboratory-derived yield strength envelopes. In the second, flexural observations were modelled using elastic-plastic plates with laboratory-derived, depth-dependent yield strength. The results show that flow laws for low-temperature plasticity of dry olivine provide a good fit to the observations at circum-Pacific subduction zones, but are much too strong to fit observations of flexure in the Hawaiian Islands region. We suggest that this discrepancy can be explained by differences in the timescale of loading combined with moderate thermal rejuvenation of the Hawaiian lithosphere.

  2. Energy resources of Pacific Coast of Colombia

    Energy Technology Data Exchange (ETDEWEB)

    Bueno Salazar, R.

    1986-07-01

    Despite failure of modest exploration efforts to yield commercial hydrocarbon production in the Choco-Pacific coastal basin of Colombia, recent geophysical, geochemical, and surface geologic investigations indicate a potential for petroleum accumulations, which could be related to fields located on the western basins of Ecuador that in fact constitute an extension of the Colombian Pacific geologic scheme. The Choco-Pacific coastal basin of Colombia covers an area of approximately 70,000 km/sup 2/, of which 14,000 km/sup 2/ lies offshore. The structural style of this area corresponds to a convergent plate basin created over folded oceanic sediments and adjacent to the subduction zone. Such a framework could be conducive to an attractive array of potential hydrocarbon-bearing traps. Geochemical knowledge of potential source rocks of Cretaceous and early Tertiary age confers an added attraction to the area. Most evaluations reveal kerogen-rich, gas-prone organic matter. Nevertheless, the existence of oil seeps from Cretaceous outcrops could indicate sufficient thermal maturity for oil generation. Adequate reservoirs could be found in sandy or calcareous rocks of late Eocene to Oligocene age, predominantly of marine origin with an estimated thickness exceeding 20,000 ft. Colombia has been one of the leading world producers of gold and platinum, mostly derived from the vast alluvial cover of the onshore area of the basin. In rocks cropping out in the Western Cordillera (eastern margin of the basin), deposits of potentially commercial value of porphyry copper and molybdenum, as well as massive sulfur, manganese, and bauxite, have been found.

  3. Pacific Bridges: The New Immigration from Asia and the Pacific Islands.

    Science.gov (United States)

    Fawcett, James T., Ed.; Carino, Benjamin V., Ed.

    The following papers are collected in this anthology of research on East-West international migration: (1) "International Migration and Pacific Basin Development" (James T. Fawcett and Benjamin V. Carino); (2) "The Global Picture of Contemporary Immigration Patterns" (Mary M. Kritz); (3) "One Field, Many Views: Competing Theories of International…

  4. Asia-Pacific Security: Policy Challenges

    OpenAIRE

    Lovell, David W.

    2013-01-01

    Since September 11, 2001, our newspapers have been filled with the ‘war on terror’; our governments have mobilised their resources for ‘homeland security’; and people everywhere are braced for more terrorist attacks. Yet while the new threat is genuine, we must not lose sight of the continuing security concerns in the Asia-Pacific. Tensions persist on the Korean peninsula, in the Taiwan Straits and the South China Sea, and in Kashmir. The region is well supplied with weapons of mass destr...

  5. Nuclear Deterrence in Asia and the Pacific

    OpenAIRE

    Gareth Evans

    2013-01-01

    The Asia Pacific region includes six of the world’s nine nuclear-armed states, and in all of them relevant policymakers, still caught in a Cold War mindset, continue to believe in nuclear deterrence as a force for peace and stability, perceiving nuclear disarmament to be not only unachievable, but undesirable. But — whether the context is major powers seeking to neutralise threats from each other (United States, Russia, China and India), non-nuclear allies seeking nuclear protection from ...

  6. 4th Pacific Rim Underwater Acoustics Conference

    CERN Document Server

    Xu, Wen; Cheng, Qianliu; Zhao, Hangfang

    2016-01-01

    These proceedings are a collection of 16 selected scientific papers and reviews by distinguished international experts that were presented at the 4th Pacific Rim Underwater Acoustics Conference (PRUAC), held in Hangzhou, China in October 2013. The topics discussed at the conference include internal wave observation and prediction; environmental uncertainty and coupling to sound propagation; environmental noise and ocean dynamics; dynamic modeling in acoustic fields; acoustic tomography and ocean parameter estimation; time reversal and matched field processing; underwater acoustic localization and communication as well as measurement instrumentations and platforms. These proceedings provide insights into the latest developments in underwater acoustics, promoting the exchange of ideas for the benefit of future research.

  7. The Asia-Pacific Strategic Triangle

    DEFF Research Database (Denmark)

    Schmidt, Johannes Dragsbæk

    2014-01-01

    applicability discussed; third, details about China and India’s relations and responses to the new US policy are being analyzed; the perspective turns to the implications for conflict and security in South Asia with a focus on Afghanistan and Iran where oil and energy security are the main denominators......The objective of this paper is to give insight into the debate over the strategic triangle and how it impacts conflict and security in South Asia. First the new geopolitical motives of the United States in the Asia-Pacific are outlined. Then the concept of strategic triangle is elaborated and its...

  8. The Southern Ocean and South Pacific Region

    OpenAIRE

    Kelleher, K.; Warnau, Michel; Failler, Pierre; Pecl, Gretta; Turley, Carol; Boeuf, Gilles; Laffoley, Dan; Parker, Laura; Gurney, Leigh

    2012-01-01

    The Region comprises three sub-regions (FAO Statistical Areas) with very different characteristics. The South Pacific includes the vast and virtually unpopulated Southern Ocean surrounding the Antarctic. It has the world’s largest fisheries off Peru and Chile and some of the world’s best managed fisheries in Australia and New Zealand. The Region has over 27% of the world’s ocean area and over 98% of the Region’s total area of 91 million km2 is ‘open ocean’. The Region contains less than 5% of...

  9. Water Chemistry of the U.S. Pacific Reefs from Water Samples collected since 2012

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Pacific Reef Assessment and Monitoring Program (Pacific RAMP), established by the Coral Reef Ecosystem Program (CREP) at the NOAA Pacific Islands Fisheries...

  10. Mercury in Pacific bluefin tuna (Thunnus orientalis):bioaccumulation and trans-Pacific Ocean migration

    Science.gov (United States)

    Colman, John A.; Nogueira, Jacob I.; Pancorbo, Oscar C.; Batdorf, Carol A.; Block, Barbara A.

    2015-01-01

    Pacific bluefin tuna (Thunnus orientalis) have the largest home range of any tuna species and are well known for the capacity to make transoceanic migrations. We report the measurement of mercury (Hg) concentrations in wild Pacific bluefin tuna (PBFT), the first reported with known size-of-fish and capture location. The results indicate juvenile PBFT that are recently arrived in the California Current from the western Pacific Ocean have significantly higher Hg concentrations in white muscle (0.51 ug/g wet mass, wm) than PBFT of longer California Current residency (0.41 ug/g wm). These new arrivals are also higher in Hg concentration than PBFT in farm pens (0.43 ug/g wm) that were captured on arrival in the California Current and raised in pens on locally derived feed. Analysis by direct Hg analyzer and attention to Hg by tissue type and location on the fish allowed precise comparisons of mercury among wild and captive fish populations. Analysis of migration and nearshore residency, determined through extensive archival tagging, bioaccumulation models, trophic investigations, and potential coastal sources of methylmercury, indicates Hg bioaccumulation is likely greater for PBFT juvenile habitats in the western Pacific Ocean (East China Sea, Yellow Sea) than in the eastern Pacific Ocean (California Current). Differential bioaccumulation may be a trophic effect or reflect methylmercury availability, with potential sources for coastal China (large hypoxic continental shelf receiving discharge of three large rivers, and island-arc volcanism) different from those for coastal Baja California (small continental shelf, no large rivers, spreading-center volcanism).

  11. Tectonic map of the Circum-Pacific region, Pacific basin sheet

    Science.gov (United States)

    Scheibner, E.; Moore, G.W.; Drummond, K.J.; Dalziel, Corvalan Q.J.; Moritani, T.; Teraoka, Y.; Sato, T.; Craddock, C.

    2013-01-01

    Circum-Pacific Map Project: The Circum-Pacific Map Project was a cooperative international effort designed to show the relationship of known energy and mineral resources to the major geologic features of the Pacific basin and surrounding continental areas. Available geologic, mineral, and energy-resource data are being complemented by new, project-developed data sets such as magnetic lineations, seafloor mineral deposits, and seafloor sediment. Earth scientists representing some 180 organizations from more than 40 Pacific-region countries are involved in this work. Six overlapping equal-area regional maps at a scale of 1:10,000,000 form the cartographic base for the project: the four Circum-Pacific Quadrants (Northwest, Southwest, Southeast, and Northeast), and the Antarctic and Arctic Sheets. There is also a Pacific Basin Sheet at a scale of 1:17,000,000. The Base Map Series and the Geographic Series (published from 1977 to 1990), the Plate-Tectonic Series (published in 1981 and 1982), the Geodynamic Series (published in 1984 and 1985), and the Geologic Series (published from 1984 to 1989) all include six map sheets. Other thematic map series in preparation include Mineral-Resources, Energy-Resources and Tectonic Maps. Altogether, more than 50 map sheets are planned. The maps were prepared cooperatively by the Circum-Pacific Council for Energy and Mineral Resources and the U.S. Geological Survey and are available from the Branch of Distribution, U. S. Geological Survey, Box 25286, Federal Center, Denver, Colorado 80225, U.S.A. The Circum-Pacific Map Project is organized under six panels of geoscientists representing national earth-science organizations, universities, and natural-resource companies. The six panels correspond to the basic map areas. Current panel chairmen are Tomoyuki Moritani (Northwest Quadrant), R. Wally Johnson (Southwest Quadrant), Ian W.D. Dalziel (Antarctic Region), vacant. (Southeast Quadrant), Kenneth J. Drummond (Northeast Quadrant), and

  12. TM4SF20 ancestral deletion and susceptibility to a pediatric disorder of early language delay and cerebral white matter hyperintensities.

    Science.gov (United States)

    Wiszniewski, Wojciech; Hunter, Jill V; Hanchard, Neil A; Willer, Jason R; Shaw, Chad; Tian, Qi; Illner, Anna; Wang, Xueqing; Cheung, Sau W; Patel, Ankita; Campbell, Ian M; Gelowani, Violet; Hixson, Patricia; Ester, Audrey R; Azamian, Mahshid S; Potocki, Lorraine; Zapata, Gladys; Hernandez, Patricia P; Ramocki, Melissa B; Santos-Cortez, Regie L P; Wang, Gao; York, Michele K; Justice, Monica J; Chu, Zili D; Bader, Patricia I; Omo-Griffith, Lisa; Madduri, Nirupama S; Scharer, Gunter; Crawford, Heather P; Yanatatsaneejit, Pattamawadee; Eifert, Anna; Kerr, Jeffery; Bacino, Carlos A; Franklin, Adiaha I A; Goin-Kochel, Robin P; Simpson, Gayle; Immken, Ladonna; Haque, Muhammad E; Stosic, Marija; Williams, Misti D; Morgan, Thomas M; Pruthi, Sumit; Omary, Reed; Boyadjiev, Simeon A; Win, Kay K; Thida, Aye; Hurles, Matthew; Hibberd, Martin Lloyd; Khor, Chiea Chuen; Van Vinh Chau, Nguyen; Gallagher, Thomas E; Mutirangura, Apiwat; Stankiewicz, Pawel; Beaudet, Arthur L; Maletic-Savatic, Mirjana; Rosenfeld, Jill A; Shaffer, Lisa G; Davis, Erica E; Belmont, John W; Dunstan, Sarah; Simmons, Cameron P; Bonnen, Penelope E; Leal, Suzanne M; Katsanis, Nicholas; Lupski, James R; Lalani, Seema R

    2013-08-01

    White matter hyperintensities (WMHs) of the brain are important markers of aging and small-vessel disease. WMHs are rare in healthy children and, when observed, often occur with comorbid neuroinflammatory or vasculitic processes. Here, we describe a complex 4 kb deletion in 2q36.3 that segregates with early childhood communication disorders and WMH in 15 unrelated families predominantly from Southeast Asia. The premature brain aging phenotype with punctate and multifocal WMHs was observed in ~70% of young carrier parents who underwent brain MRI. The complex deletion removes the penultimate exon 3 of TM4SF20, a gene encoding a transmembrane protein of unknown function. Minigene analysis showed that the resultant net loss of an exon introduces a premature stop codon, which, in turn, leads to the generation of a stable protein that fails to target to the plasma membrane and accumulates in the cytoplasm. Finally, we report this deletion to be enriched in individuals of Vietnamese Kinh descent, with an allele frequency of about 1%, embedded in an ancestral haplotype. Our data point to a constellation of early language delay and WMH phenotypes, driven by a likely toxic mechanism of TM4SF20 truncation, and highlight the importance of understanding and managing population-specific low-frequency pathogenic alleles.

  13. A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments.

    Science.gov (United States)

    Chittenden, L M; Schertz, K F; Lin, Y R; Wing, R A; Paterson, A H

    1994-03-01

    The first "complete" genetic linkage map of Sorghum section Sorghum is described, comprised of ten linkage groups putatively corresponding to the ten gametic chromosomes of S. bicolor and S. propinquum. The map includes 276 RFLP loci, predominately detected by PstI-digested S. bicolor genomic probes, segregating in 56 F2 progeny of a cross between S. bicolor and S. propinquum. Although prior cytological evidence suggests that the genomes of these species are largely homosequential, a high level of molecular divergence is evidenced by the abundant RFLP and RAPD polymorphisms, the marked deviations from Mendelian segregation in many regions of the genome, and several species-specific DNA probes. The remarkable level of DNA polymorphism between these species will facilitate development of a high-density genetic map. Further, the high level of DNA polymorphism permitted mapping of multiple loci for 21 (8.2%) DNA probes. Linkage relationships among eight (38%) of these probes suggest ancestral duplication of three genomic regions. Mapping of 13 maize genomic clones in this cross was consistent with prior results. Mapping of heterologous cDNAs from rice and oat suggests that it may be feasible to extend comparative mapping to these distantly-related species, and to ultimately generate a detailed description of chromosome rearrangements among cultivated Gramineae. Limited investigation of a small number of RFLPs showed several alleles common to S. bicolor and S. Halepense ("johnson-grass"), but few alleles common to S. propinquum and S. halepense, raising questions about the origin of S. halepense.

  14. A recurrent laminin 5 mutation in British patients with lethal (Herlitz) junctional epidermolysis bullosa: evidence for a mutational hotspot rather than propagation of an ancestral allele.

    Science.gov (United States)

    Ashton, G H; Mellerio, J E; Dunnill, M G; Pulkkinen, L; Christiano, A M; Uitto, J; Eady, R A; McGrath, J A

    1997-05-01

    The three genes (LAMA3, LAB3 and LAMC2) that encode the anchoring filament protein, laminin 5, may all harbour pathogenetic mutations in the autosomal recessive blistering skin disorder, junctional epidermolysis bullosa (JEB). Recently, one particular mutation, R635X in the LAMB3 gene, has been found to account for approximately 40% of all JEB laminin 5 mutations (Kivirikko et al., Hum Mol Genet 1996; 5: 231-7). In this study, we assessed the frequency of this mutation in 12 British patients with lethal (Herlitz) JEB using PCR amplification of genomic DNA and restriction endonuclease digestion. The mutation R635X was fond in seven of 24 (29%) mutant alleles, confirming its relative frequency within the British gene pool. In addition, haplotype analysis using intragenic polymorphisms showed that the mutation arose on at least four different haplotype backgrounds, suggesting it represents a mutational hotspot rather than propagation of a common British ancestral allele. These findings support the hypermutable nature of this CpG dinucleotide and have implications in screening for laminin 5 gene mutations in British and other patients with JEB. PMID:9205497

  15. Migration of the Pee Dee River system inferred from ancestral paleochannels underlying the South Carolina Grand Strand and Long Bay inner shelf

    Science.gov (United States)

    Baldwin, W.E.; Morton, R.A.; Putney, T.R.; Katuna, M.P.; Harris, M.S.; Gayes, P.T.; Driscoll, N.W.; Denny, J.F.; Schwab, W.C.

    2006-01-01

    Several generations of the ancestral Pee Dee River system have been mapped beneath the South Carolina Grand Strand coastline and adjacent Long Bay inner shelf. Deep boreholes onshore and high-resolution seismic-reflection data offshore allow for reconstruction of these paleochannels, which formed during glacial lowstands, when the Pee Dee River system incised subaerially exposed coastal-plain and continental-shelf strata. Paleochannel groups, representing different generations of the system, decrease in age to the southwest, where the modern Pee Dee River merges with several coastal-plain tributaries at Winyah Bay, the southern terminus of Long Bay. Positions of the successive generational groups record a regional, southwestward migration of the river system that may have initiated during the late Pliocene. The migration was primarily driven by barrier-island deposition, resulting from the interaction of fluvial and shoreline processes during eustatic highstands. Structurally driven, subsurface paleotopography associated with the Mid-Carolina Platform High has also indirectly assisted in forcing this migration. These results provide a better understanding of the evolution of the region and help explain the lack of mobile sediment on the Long Bay inner shelf. Migration of the river system caused a profound change in sediment supply during the late Pleistocene. The abundant fluvial source that once fed sand-rich barrier islands was cut off and replaced with a limited source, supplied by erosion and reworking of former coastal deposits exposed at the shore and on the inner shelf.

  16. The capability to synthesize phytochelatins and the presence of constitutive and functional phytochelatin synthases are ancestral (plesiomorphic) characters for basal land plants.

    Science.gov (United States)

    Petraglia, Alessandro; De Benedictis, Maria; Degola, Francesca; Pastore, Giovanni; Calcagno, Margherita; Ruotolo, Roberta; Mengoni, Alessio; Sanità di Toppi, Luigi

    2014-03-01

    Bryophytes, a paraphyletic group which includes liverworts, mosses, and hornworts, have been stated as land plants that under metal stress (particularly cadmium) do not synthesize metal-binding peptides such as phytochelatins. Moreover, very little information is available to date regarding phytochelatin synthesis in charophytes, postulated to be the direct ancestors of land plants, or in lycophytes, namely very basal tracheophytes. In this study, it was hypothesized that basal land plants and charophytes have the capability to produce phytochelatins and possess constitutive and functional phytochelatin synthases. To verify this hypothesis, twelve bryophyte species (six liverworts, four mosses, and two hornworts), three charophytes, and two lycophyte species were exposed to 0-36 μM cadmium for 72 h, and then assayed for: (i) glutathione and phytochelatin quali-quantitative content by HPLC and mass spectrometry; (ii) the presence of putative phytochelatin synthases by western blotting; and (iii) in vitro activity of phytochelatin synthases. Of all the species tested, ten produced phytochelatins in vivo, while the other seven did not. The presence of a constitutively expressed and functional phytochelatin synthase was demonstrated in all the bryophyte lineages and in the lycophyte Selaginella denticulata, but not in the charophytes. Hence, current knowledge according to phytochelatins have been stated as being absent in bryophytes was therefore confuted by this work. It is argued that the capability to synthesize phytochelatins, as well as the presence of active phytochelatin synthases, are ancestral (plesiomorphic) characters for basal land plants.

  17. Transcriptome Profiling of the Green Alga Spirogyra pratensis (Charophyta) Suggests an Ancestral Role for Ethylene in Cell Wall Metabolism, Photosynthesis, and Abiotic Stress Responses1[OPEN

    Science.gov (United States)

    2016-01-01

    It is well known that ethylene regulates a diverse set of developmental and stress-related processes in angiosperms, yet its roles in early-diverging embryophytes and algae are poorly understood. Recently, it was shown that ethylene functions as a hormone in the charophyte green alga Spirogyra pratensis. Since land plants evolved from charophytes, this implies conservation of ethylene as a hormone in green plants for at least 450 million years. However, the physiological role of ethylene in charophyte algae has remained unknown. To gain insight into ethylene responses in Spirogyra, we used mRNA sequencing to measure changes in gene expression over time in Spirogyra filaments in response to an ethylene treatment. Our analyses show that at the transcriptional level, ethylene predominantly regulates three processes in Spirogyra: (1) modification of the cell wall matrix by expansins and xyloglucan endotransglucosylases/hydrolases, (2) down-regulation of chlorophyll biosynthesis and photosynthesis, and (3) activation of abiotic stress responses. We confirmed that the photosynthetic capacity and chlorophyll content were reduced by an ethylene treatment and that several abiotic stress conditions could stimulate cell elongation in an ethylene-dependent manner. We also found that the Spirogyra transcriptome harbors only 10 ethylene-responsive transcription factor (ERF) homologs, several of which are regulated by ethylene. These results provide an initial understanding of the hormonal responses induced by ethylene in Spirogyra and help to reconstruct the role of ethylene in ancestral charophytes prior to the origin of land plants. PMID:27489312

  18. Philopatry and migration of Pacific white sharks.

    Science.gov (United States)

    Jorgensen, Salvador J; Reeb, Carol A; Chapple, Taylor K; Anderson, Scot; Perle, Christopher; Van Sommeran, Sean R; Fritz-Cope, Callaghan; Brown, Adam C; Klimley, A Peter; Block, Barbara A

    2010-03-01

    Advances in electronic tagging and genetic research are making it possible to discern population structure for pelagic marine predators once thought to be panmictic. However, reconciling migration patterns and gene flow to define the resolution of discrete population management units remains a major challenge, and a vital conservation priority for threatened species such as oceanic sharks. Many such species have been flagged for international protection, yet effective population assessments and management actions are hindered by lack of knowledge about the geographical extent and size of distinct populations. Combining satellite tagging, passive acoustic monitoring and genetics, we reveal how eastern Pacific white sharks (Carcharodon carcharias) adhere to a highly predictable migratory cycle. Individuals persistently return to the same network of coastal hotspots following distant oceanic migrations and comprise a population genetically distinct from previously identified phylogenetic clades. We hypothesize that this strong homing behaviour has maintained the separation of a northeastern Pacific population following a historical introduction from Australia/New Zealand migrants during the Late Pleistocene. Concordance between contemporary movement and genetic divergence based on mitochondrial DNA demonstrates a demographically independent management unit not previously recognized. This population's fidelity to discrete and predictable locations offers clear population assessment, monitoring and management options. PMID:19889703

  19. 2011 minerals yearbook: Asia and the Pacific

    Science.gov (United States)

    Fong-Sam, Yolanda; Kuo, Chin S.; Shi, Lin; Tse, Pui-Kwan; Wacaster, Susan; Wilburn, David R.

    2013-01-01

    The 31 countries and territories of the Asia and the Pacific region reported on in the Minerals Yearbook have a total area of about 30 million square kilometers, which accounts for about 20.1% of the world total. data and information for the majority of this report do not include Kiribati, Maldives, the Marshall islands, the federated states of Micronesia, Palau, tongo, or Vanuatu. the total population was about 3.9 billion, which accounted for 55.6% of the world total in 2011. china and india, which were the world’s two most populous countries, accounted for 66.7% of the region’s total population. the real gross domestic product (GdP) growth rate of 30 of the region’s countries increased in 2011 compared with that of 2010 whereas that of only one country, Japan, was reported to have decreased (by 0.8%). the GdP of 17 of the 31 countries and territories of the Asia and Pacific region increased by at least 5% in 2011, but for many countries the growth rate was lower than in 2010. the GdP of Mongolia, which was the country with the largest GdP growth in 2011, increased by 17.5% in 2011 compared with an increase of 6.4% in 2010 and a decrease of 1.3% in 2009 (tables 1, 2).

  20. THE "COMFORT WOMEN" OF THE PACIFIC WAR

    Directory of Open Access Journals (Sweden)

    JULIA YURI OKAMOTO

    2013-12-01

    Full Text Available During the pacific war, about 80 to 200 thousand women were mobilized by the Japanese imperial army to sexually serve its soldiers, in one of world’s largest cases of human trafficking. Most of the victims, euphemistically known as "comfort women", came from Korea, Japan's colony at the time, and was attracted by false promises of employment or simply kidnapped by Japanese troops. Taken to military brothels throughout the pacific, they were subjected to repeated rape and beatings. Some of them, as young as age 12, were daily forced to have sex with Japanese soldiers, 10, 30, 50 times a day. The few women who survived and were able to return home at the end of the war continued to suffer for their past, through psychological trauma and social ostracism. They remained silent about their experience because of fear and shame. These women would have like to live in peace, being wives, mothers, sisters, grandmothers ... but this choice was denied to all. None received any compensation from the Japanese government official, who continues to evade its legal and moral responsibilities regarding war crime. Sixty-eight years later, they are still waiting for justice.