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Sample records for ancestral pacific gondwana

  1. New time constraints for the age of metamorphism at the ancestral Pacific Gondwana margin of southern Chile (42-52°S)

    OpenAIRE

    Stuart N. Thomson; Francisco Hervé

    2002-01-01

    Fission-track (FT) analysis was performed on ten samples of detrital zircons from several pre-Late Jurassic metamorphic accretionary complexes at the ancestral Pacific margin of Gondwana in southern Chile (42-52°S) previously dated by U-Pb SHRIMP. Post-metamorphic zircon FT cooling ages combined with published U-Pb provenance ages allow the estimation of the following maximum and minimum ages of deposition and metamorphism: the Eastern Andes metamorphic complex (EAMC), 364 to 250 Ma (Late Dev...

  2. New time constraints for the age of metamorphism at the ancestral Pacific Gondwana margin of southern Chile (42-52°S

    Directory of Open Access Journals (Sweden)

    Stuart N. Thomson

    2002-12-01

    Full Text Available Fission-track (FT analysis was performed on ten samples of detrital zircons from several pre-Late Jurassic metamorphic accretionary complexes at the ancestral Pacific margin of Gondwana in southern Chile (42-52°S previously dated by U-Pb SHRIMP. Post-metamorphic zircon FT cooling ages combined with published U-Pb provenance ages allow the estimation of the following maximum and minimum ages of deposition and metamorphism: the Eastern Andes metamorphic complex (EAMC, 364 to 250 Ma (Late Devonian to Permian/Triassic boundary; the Duque de York flysch of the Madre de Dios accretionary complex (MDAC, 234 to 195 Ma (Middle Triassic to Early Jurassic; and the Chonos/Chiloé metamorphic complex (CMC, 213 to 198 Ma (Late Triassic to Early Jurassic. The implications of these results are (1 they verify that deposition, accretion and metamorphism of most of the EAMC took place well before continentally derived flysch in the complexes west of the Patagonian batholith (MDAC and CMC was deposited, accreted, and metamorphosed, supporting either a punctuated evolution of accretion along the ancestral Pacific Gondwana margin or the existence two distinct basement terranes and (2 that the continentally derived flysch of the CMC and MDAC share an equivalent depositional and metamorphic history indicative of widespread accretion in Late Triassic to Early Jurassic times. Mixed post-metamorphic zircon FT single grain ages and an apatite FT age from the island of Chiloé (43°S reveal a previously unknown Late Cretaceous (109-60 Ma phase of reheating in these rocks, most likely linked to plutonic activity of this age described in other parts of the CMCNuevas limitaciones temporales a la edad del metamorfismo, en el margen ancestral pacífico de Gondwana, sur de Chile (42-52°S. La datación por trazas de fisión (FT fue realizado en circones detríticos previamente datados por U-Pb SHRIMP, pertenecientes a distintos complejos metamórficos del sur de Chile (42-52

  3. Tectonomagmatic controls on Gondwana break-up models: Evidence from the Proto-Pacific Margin of Antarctica

    Science.gov (United States)

    Storey, Bryan C.; Alabaster, Tony

    1991-12-01

    Geochemical and isotopic data are presented that suggest the existence of a large, Middle Jurassic subduction-related magmatic province common to both the Antarctic Peninsula and southern South America. We argue that during the initial stages of Gondwana breakup, Pacific margin magmas were derived from an enriched lithospheric mantle source similar to that for the contemporaneous within-plate Ferrar-Tasman suite. Enriched lithospheric initial-rifting magmas were succeeded, in at least part of the Rocas Verdes basin, by transitional early drift magmas and then by entirely asthenospheric mid-ocean ridge basalt (MORB) magmas representing lithospheric rupture and seafloor spreading. We propose a plate interaction model for the initial stages of Gondwana breakup relating the broad zone of lithospheric mantle melting to a reduction in plate boundary forces. The change from Gondwanide compression to lithospheric extension in the Jurassic is linked to a change from shallow to steeply dipping subduction and to a slowing of subduction rates caused possibly by a decreasing age of the subducting plate. Ridge-trench interaction may have followed subduction of young, hot oceanic lithosphere, possibly causing a temporary cessation of subduction and a further reduction in plate boundary forces, thus facilitating breakup.

  4. Proterozoic-Cambrian detrital zircon and monazite ages from the Anakie lnlier, central Queensland: Grenville and Pacific-Gondwana signatures

    International Nuclear Information System (INIS)

    The Anakie Metamorphic Group is a complexly deformed, dominantly metasedimentary succession in central Queensland. Metamorphic cooling is constrained to ca 500 Ma by previously published K-Ar ages. Detrital-zircon SHRIMP U-Pb ages from three samples of greenschist facies quartz-rich psammites (Bathampton Metamorphics), west of Clermont, are predominantly in the age range 1300-1000Ma (65-75%). They show that a Grenville-aged orogenic belt must have existed in northeastern Australia, which is consistent with the discovery of a potential Grenville source farther north. The youngest detrital zircons in these samples are ca 580 Ma, indicating that deposition may have been as old as latest Neoproterozoic. Two samples have been analysed from amphibolite facies pelitic schist from the western part of the inlier (Wynyard Metamorphics). One sample contains detrital monazite with two age components of ca 580-570 Ma and ca 540 Ma. The other sample only has detrital zircons with the youngest component between 510Ma and 700Ma (Pacific-Gondwana component), which is consistent with a Middle Cambrian age for these rocks. These zircons were probably derived from igneous activity associated with rifting events along the Gondwanan passive margin. These constraints confirm correlation of the Anakie Metamorphic Group with latest Neoproterozoic - Cambrian units in the Adelaide Fold Belt of South Australia and the Wonominta Block of western New South Wales. Copyright (2001) Geological Society of Australia

  5. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific.

    OpenAIRE

    Rapacz, J; Chen, L.; Butler-Brunner, E; Wu, M J; Hasler-Rapacz, J O; Butler, R.; Schumaker, V N

    1991-01-01

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB ha...

  6. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific

    International Nuclear Information System (INIS)

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes

  7. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific

    Energy Technology Data Exchange (ETDEWEB)

    Rapacz, J.; Hasler-Rapacz, J.O. (Univ. of Wisconsin, Madison (United States)); Chen, L.; Wu, Mingjiuan; Schumaker, V.N. (Univ. of California, Los Angeles (United States)); Butler-Brunner, E.; Butler, R. (Swiss Red Cross Blood Transfusion Service, Bern (Switzerland))

    1991-02-15

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes.

  8. Using ancient DNA to study the origins and dispersal of ancestral Polynesian chickens across the Pacific.

    Science.gov (United States)

    Thomson, Vicki A; Lebrasseur, Ophélie; Austin, Jeremy J; Hunt, Terry L; Burney, David A; Denham, Tim; Rawlence, Nicolas J; Wood, Jamie R; Gongora, Jaime; Girdland Flink, Linus; Linderholm, Anna; Dobney, Keith; Larson, Greger; Cooper, Alan

    2014-04-01

    The human colonization of Remote Oceania remains one of the great feats of exploration in history, proceeding east from Asia across the vast expanse of the Pacific Ocean. Human commensal and domesticated species were widely transported as part of this diaspora, possibly as far as South America. We sequenced mitochondrial control region DNA from 122 modern and 22 ancient chicken specimens from Polynesia and Island Southeast Asia and used these together with Bayesian modeling methods to examine the human dispersal of chickens across this area. We show that specific techniques are essential to remove contaminating modern DNA from experiments, which appear to have impacted previous studies of Pacific chickens. In contrast to previous reports, we find that all ancient specimens and a high proportion of the modern chickens possess a group of unique, closely related haplotypes found only in the Pacific. This group of haplotypes appears to represent the authentic founding mitochondrial DNA chicken lineages transported across the Pacific, and allows the early dispersal of chickens across Micronesia and Polynesia to be modeled. Importantly, chickens carrying this genetic signature persist on several Pacific islands at high frequencies, suggesting that the original Polynesian chicken lineages may still survive. No early South American chicken samples have been detected with the diagnostic Polynesian mtDNA haplotypes, arguing against reports that chickens provide evidence of Polynesian contact with pre-European South America. Two modern specimens from the Philippines carry haplotypes similar to the ancient Pacific samples, providing clues about a potential homeland for the Polynesian chicken. PMID:24639505

  9. Timing of the magmatism of the paleo-Pacific border of Gondwana: U-Pb geochronology of Late Paleozoic to Early Mesozoic igneous rocks of the north Chilean Andes between 20o and 31oS

    International Nuclear Information System (INIS)

    U-Pb zircon geochronological data provide record of about 130 Ma of igneous activity in the Andes of northern Chile, which extended episodically from the latest Early Carboniferous to Early Jurassic (328-194 Ma). The overall U-Pb data show that volcanism and plutonism were essentially synchronous and major episodes of igneous activity developed during the Late Carboniferous to Mid-Permian (310 to 260 Ma) and from Late Permian to Late Triassic (255-205 Ma), with less prominent episodes in the mid-Carboniferous (330 to 320 Ma), and Early Jurassic (200-190 Ma). Thus, from the Carboniferous to the Early Triassic dominantly silicic magmatism developed along the Chilean segment of the southwestern border of Gondwana supercontinent. Further magmatism developed during the Mid-Late Triassic (250-194 Ma) was bimodal and synchronous with rift-related, continental and/or marine sedimentary strata related to the early stages of break-up of Gondwana. Most of the silicic volcanic rocks of the Precordillera and Domeyko Cordillera of northern Chile (21o 30o to 25o30oS) are older than the silicic rocks assigned to the Choiyoi succession in Argentina, being instead equivalent in age to Carboniferous to Early Permian marine sedimentary sequences present in the eastern Argentinean foreland. On the other hand, silicic volcanic successions exposed in the easternmost part of northern Chile are equivalent in age to the Choiyoi succession of the San Rafael Block of Argentina. An eastward expansion or migration of the volcanism during the Mid-Permian to Early Triassic is inferred, interpretation that is consistent with expansion of the volcanism at that time in Argentina. The timing of the Late Paleozoic to Early Jurassic magmatism is coincident with that of the Andes of Peru and of western Argentina according to the available U-Pb data, revealing a rather consistent evolution in time of the magmatism along the southwestern, paleo-Pacific border of Gondwana

  10. Jurassic fishes of Gondwana

    Directory of Open Access Journals (Sweden)

    Adriana López-Arbarello

    2008-12-01

    Full Text Available The Jurassic is an important period for understanding the origin of modern fish faunas, since it saw the first radiation - and in some cases the origin - of most modern groups. In chondrichthyans, neoselachian sharks and rays diversified during this time. In actinopterygians, the neopterygians, and among them the teleosts, experienced an important radiation, which led to the appearance of several of the modern teleosts groups. In the sarcopterygians, dipnoans and actinistians approached their current forms. However, the Jurassic fossil record of fishes is strongly biased towards the Northern Hemisphere. The only notable Early Jurassic fish fauna from Gondwana is that of the Kota Formation of India. For the Middle Jurassic, the most important Gondwanan fish faunas are those of the Aalenian-Bathonian Stanleyville Beds of the Democratic Republic of Congo, in which a distinct freshwater and a marine fauna are found. In the Late Jurassic, the Gondwanan record is slightly better, with important marine faunas being known from the Oxfordian Quebrada del Profeta in Chile and the Tithonian Vaca Muerta Formation of Argentina. Freshwater faunas have been described from the Tithonian Talbragar Beds of eastern Australia and the Tithonian Cañadón Calcáreo Formation of Argentina. The taxonomic composition of the known marine actinopterygian faunas of Gondwana is in general agreement with faunas of the Northern Hemisphere. However, the Jurassic fish record from Gondwana is highly incomplete both stratigraphically and geographically, and most faunas are in need of revision, further hampering an interpretation of Jurassic fish evolution in the Southern Hemisphere.

  11. Estimating Ancestral Population Parameters

    OpenAIRE

    Wakeley, J.; Hey, J.

    1997-01-01

    The expected numbers of different categories of polymorphic sites are derived for two related models of population history: the isolation model, in which an ancestral population splits into two descendents, and the size-change model, in which a single population undergoes an instantaneous change in size. For the isolation model, the observed numbers of shared, fixed, and exclusive polymorphic sites are used to estimate the relative sizes of the three populations, ancestral plus two descendent...

  12. Ancestral Relationships Using Metafounders

    DEFF Research Database (Denmark)

    Legarra, Andres; Christensen, Ole Fredslund; Vitezica, Zulma G;

    2015-01-01

    Recent use of genomic (marker-based) relationships shows that relationships exist within and across base population (breeds or lines). However, current treatment of pedigree relationships is unable to consider relationships within or across base populations, although such relationships must exist...... due to finite size of the ancestral population and connections between populations. This complicates the conciliation of both approaches and, in particular, combining pedigree with genomic relationships. We present a coherent theoretical framework to consider base population in pedigree relationships....... We suggest a conceptual framework that considers each ancestral population as a finite-sized pool of gametes. This generates across-individual relationships and contrasts with the classical view where each population is considered as an infinite, unrelated pool. Several ancestral populations may be...

  13. Neopaleozoic flora in stratigraphic zones of Gondwana

    Energy Technology Data Exchange (ETDEWEB)

    Archangelsky, S.

    1984-01-01

    Carboniferous and Permian floristic sequences in Gondwana and adjacent areas are analyzed. These data are distributed on palaeogeographic maps that correspond to four chronologic segments: lower Carboniferous-early middle Carboniferous, early middle Carboniferous-middle late Carboniferous, lower Permian and upper Permian. A correlation of zones and floral assemblages during the late Palaeozoic is proposed on the base of recent data. The distribution of possible periglacial sediments (diamictites) is also included in the sequences. It is concluded that palaeogeography conditioned the floristic development in Gondwana. An independent evolution of different gondwanic areas is suggested by the continuous change in their palaeolatitudinal disposition. South Africa and South America had a similar development during the Permian and belong to the Northafroamerican Palaeofloristic Province. During the same period, on the other hand, Australia, India and Antartica had a more temperate climatic regime, being located nearer the pole; they may belong to the Indoaustralian Palaefloristic Province. 44 refs.

  14. From Rodinia to Gondwana : supercontinent evolution in the Transantarctic Mountains

    International Nuclear Information System (INIS)

    The Transantarctic Mountains provide a cryptic but important record of Proterozoic and Early Paleozoic supercontinent history, including Rodinian assembly, Rodinian breakup, transition from a drifting to subducting margin, and active plate-margin activity during Gondwanan assembly. A linkage between Laurentia and East Antarctica as part of Neoproterozoic Rodinia is plausible, based on isotopic data from rare exposures of crystalline basement in the Transantarctic Mountains. However, testing of paleogeographic details is difficult because the crustal structure of the East Antarctic shield is poorly known along much of its perimeter and because we lack well-dated Proterozoic paleomagnetic poles. The timing of Rodinian breakup is poorly constrained globally, yet local mafic magmatism of 800-650 Ma age provides the best evidence in the Transantarctic Mountains for Late Neoproterozoic crustal extension and possible rifting. Still uncertain are the position of the rift margin, the geometry of rifting, the extent of crustal thinning, the extent of rift-margin sedimentation, the location of possible transform offset, and the influence of these structural patterns on later orogenesis. A transformation from drifting to active subducting mode is inferred for the Late Neoproterozoic, but the nature and specific timing of this event are unknown. The Vendian-Early Paleozoic Ross Orogen reflects convergent-margin activity associated temporally, if not causally, with the consolidation of Gondwana. Inception of a convergent Gondwana margin is signalled by the earliest Ross granitoids at c. 560 Ma and may be reflected in early structural inversion of craton-margin sedimentary succession. Protracted Ross tectonism between 560 and 480 Ma involved episodic deformation, calc-alkaline magmatism, and syn-orogenic deposition of arc-derived detritus in a sinistral-transpressive, continental-margin arc setting. Sedimentary provenance in siliciclastic rocks appears to have shifted by late

  15. Jurassic fishes of Gondwana Peces jurásicos de Gondwana

    Directory of Open Access Journals (Sweden)

    Adriana López-Arbarello

    2008-12-01

    Full Text Available The Jurassic is an important period for understanding the origin of modern fish faunas, since it saw the first radiation - and in some cases the origin - of most modern groups. In chondrichthyans, neoselachian sharks and rays diversified during this time. In actinopterygians, the neopterygians, and among them the teleosts, experienced an important radiation, which led to the appearance of several of the modern teleosts groups. In the sarcopterygians, dipnoans and actinistians approached their current forms. However, the Jurassic fossil record of fishes is strongly biased towards the Northern Hemisphere. The only notable Early Jurassic fish fauna from Gondwana is that of the Kota Formation of India. For the Middle Jurassic, the most important Gondwanan fish faunas are those of the Aalenian-Bathonian Stanleyville Beds of the Democratic Republic of Congo, in which a distinct freshwater and a marine fauna are found. In the Late Jurassic, the Gondwanan record is slightly better, with important marine faunas being known from the Oxfordian Quebrada del Profeta in Chile and the Tithonian Vaca Muerta Formation of Argentina. Freshwater faunas have been described from the Tithonian Talbragar Beds of eastern Australia and the Tithonian Cañadón Calcáreo Formation of Argentina. The taxonomic composition of the known marine actinopterygian faunas of Gondwana is in general agreement with faunas of the Northern Hemisphere. However, the Jurassic fish record from Gondwana is highly incomplete both stratigraphically and geographically, and most faunas are in need of revision, further hampering an interpretation of Jurassic fish evolution in the Southern Hemisphere.El Período Jurásico es muy importante para entender el origen de las ictiofaunas modernas, dado que evidenció la primera radiación - y en algunos casos el origen - de la mayoría de los grupos modernos. Así, los condrictios neoselacios se diversificaron durante este periodo. Los actinopterigios

  16. New data refine the travels of Gondwana

    Science.gov (United States)

    Schultz, Colin

    2011-09-01

    The supercontinent Pangea, which existed roughly 300-200 million years ago as the only landmass on Earth, plays a special role in the history of geophysics. The geological, biological, and paleontological similarities between now distant shores—once connected in Pangea—gave the first evidence for the theory of continental drift. That Pangea came apart to form the modern world is well established, but exactly how, when, and where the individual plates moved are still up for debate. Drawing on new high-quality paleomagnetic data, Domeier et al. describe the movements of Gondwana that, until its separation from Laurasia 200 million years ago, formed the southern half of Pangea. The authors collected samples drawn from the Sierra Chica, a band of ancient volcanic rocks in central Argentina. Within the samples the magnetic minerals hematite and titanomagnetite were used to calculate the geographic location of the magnetic pole 263 million years ago. Because the Earth's magnetic poles drift only slightly over time and have well-known reversal episodes, deviations in the location of the calculated pole (paleopole) from the present location are an indication that the plate underlying the volcanic rock has moved since the lava solidified. Changes in the paleopole drawn from samples of different ages from the same plate give a map for the plate's movement. (Geochemistry, Geophysics, Geosystems, doi:10.1029/2011GC003616, 2011)

  17. Ancestral reconstruction of tick lineages.

    Science.gov (United States)

    Mans, Ben J; de Castro, Minique H; Pienaar, Ronel; de Klerk, Daniel; Gaven, Philasande; Genu, Siyamcela; Latif, Abdalla A

    2016-06-01

    Ancestral reconstruction in its fullest sense aims to describe the complete evolutionary history of a lineage. This depends on accurate phylogenies and an understanding of the key characters of each parental lineage. An attempt is made to delineate our current knowledge with regard to the ancestral reconstruction of the tick (Ixodida) lineage. Tick characters may be assigned to Core of Life, Lineages of Life or Edges of Life phenomena depending on how far back these characters may be assigned in the evolutionary Tree of Life. These include housekeeping genes, sub-cellular systems, heme processing (Core of Life), development, moulting, appendages, nervous and organ systems, homeostasis, respiration (Lineages of Life), specific adaptations to a blood-feeding lifestyle, including the complexities of salivary gland secretions and tick-host interactions (Edges of Life). The phylogenetic relationships of lineages, their origins and importance in ancestral reconstruction are discussed. Uncertainties with respect to systematic relationships, ancestral reconstruction and the challenges faced in comparative transcriptomics (next-generation sequencing approaches) are highlighted. While almost 150 years of information regarding tick biology have been assembled, progress in recent years indicates that we are in the infancy of understanding tick evolution. Even so, broad reconstructions can be made with relation to biological features associated with various lineages. Conservation of characters shared with sister and parent lineages are evident, but appreciable differences are present in the tick lineage indicating modification with descent, as expected for Darwinian evolutionary theory. Many of these differences can be related to the hematophagous lifestyle of ticks. PMID:26868413

  18. Patterns of Gondwana plant colonisation anddiversification

    Science.gov (United States)

    Anderson, J. M.; Anderson, H. M.; Archangelsky, S.; Bamford, M.; Chandra, S.; Dettmann, M.; Hill, R.; McLoughlin, S.; Rösler, O.

    Charting the broad patterns of vascular plant evolution for Gondwana againstthe major global environmental shifts and events is attempted here for the first time. This is based on the analysis of the major vascular plant-bearing formations of the southern continents (plus India) correlated against the standard geological time-scale. Australia, followed closely by South America, are shown to yield by far the most complete sequences of productive strata. Ten seminal turnover pulses in the unfolding evolutionary picture are identified and seen to be linked to continental drift, climate change and mass global extinctions. The rise of vascular plants along the tropical belt, for instance, followed closely after the end-Ordovician warming and extinction. Equally remarkable is that the Late Devonian extinction may have caused both the terrestrialisation of the vertebrates and the origin of the true gymnosperms. The end-Permian extinction, closure of Iapetus, together with warming, appears to have set in motion an unparalleled, explosive, gymnosperm radiation; whilst the Late Triassic extinction dramatically curtailed it. It is suggested that the latitudinal diversity gradient clearly recognised today, where species richness increases towards the tropics, may have been partly reversed during phases of Hot House climate. Evidence hints at this being particularly so at the heyday of the gymnosperms in the Late Triassic super-Hot House world. As for the origin of terrestrial, vascular, plant life, the angiosperms seem closely linked to a phase of marked shift from Ice House to Hot House. Insect and tetrapod evolutionary patterns are discussed in the context of the plants providing the base of the ever-changing ecosystems. Intimate co-evolution is often evident. This isn't always the case, for example the non-linkage between the dominant, giant, long-necked, herbivorous sauropod dinosaurs and the dramatic radiation of the flowering plants in the Mid Cretaceous.

  19. Kinematics of late Paleozoic continental collision between Laurentia and Gondwana

    Science.gov (United States)

    Sacks, P.E.; Secor, D.T., Jr.

    1990-01-01

    In the Appalachians, late Paleozoic Alleghanian orogenesis is widely regarded as resulting from dextral oblique collision between irregular margins of Gondwana and Laurentia. However, this relative plate motion cannot account for coeval convergence in the Ouachitas and Variscides and is incompatible with some tectonic transport indicators in the Appalachians. An alternative kinematic model is proposed in which early sinistral transpression in the Appalachians is followed by counterclockwise rotation of Gondwana and the development of a system of dextral strike-slip faults extending from southern Europe to Alabama.

  20. Shrinkage Effect in Ancestral Maximum Likelihood

    CERN Document Server

    Mossel, Elchanan; Steel, Mike

    2008-01-01

    Ancestral maximum likelihood (AML) is a method that simultaneously reconstructs a phylogenetic tree and ancestral sequences from extant data (sequences at the leaves). The tree and ancestral sequences maximize the probability of observing the given data under a Markov model of sequence evolution, in which branch lengths are also optimized but constrained to take the same value on any edge across all sequence sites. AML differs from the more usual form of maximum likelihood (ML) in phylogenetics because ML averages over all possible ancestral sequences. ML has long been known to be statistically consistent -- that is, it converges on the correct tree with probability approaching 1 as the sequence length grows. However, the statistical consistency of AML has not been formally determined, despite informal remarks in a literature that dates back 20 years. In this short note we prove a general result that implies that AML is statistically inconsistent. In particular we show that AML can `shrink' short edges in a t...

  1. Algorithms of Ancestral Gene Length Reconstruction

    Directory of Open Access Journals (Sweden)

    Alexander Bolshoy

    2013-01-01

    Full Text Available Ancestral sequence reconstruction is a well-known problem in molecular evolution. The problem presented in this study is inspired by sequence reconstruction, but instead of leaf-associated sequences we consider only their lengths. We call this problem ancestral gene length reconstruction. It is a problem of finding an optimal labeling which minimizes the total length’s sum of the edges, where both a tree and nonnegative integers associated with corresponding leaves of the tree are the input. In this paper we give a linear algorithm to solve the problem on binary trees for the Manhattan cost function .

  2. Gondwana basins and their coal resources in Bangladesh

    International Nuclear Information System (INIS)

    Fault bounded five Gondwana basins have been discovered in the north western Bangladesh. Among these basins show considerable amount of coal deposits. The Gondwana rocks are highly formed during the Permo-carboniferous diastrophism and later on acquired dynamic characters. In almost all basins, the Permian rocks overlie the Precambrian basement and underlie either the Tertiary or the Cretaceous sediments, structural, stratigraphic, and depositional history of these basins is more or less similar. The sedimentary sequences are composed of light to dark gray, fine to very coarse grained, sub angular to sub rounded felspathic sandstone, dark grey carbonaceous shale and sandstone, variegated conglomerate and thick coal seams (single seam max. 42.38m). The rocks are often alternated and bear the characteristics of cyclic sedimentation. The depositional environments varied from restricted drainage to open fluvial dominated low to moderate sinuous drainage system. The coal bearing basins were flanked by vegetated and swampy over bank. Age of these coals is suggested to be the late permian. Proved and probable reserves of coal in Jamalganj-Paharpur basin are 670 and 1,460 million metric tons, in Barapukuria basin 303 and 3899 million metric tons; in Barapukuria basin 303 and 389 million metric tons; and in Khalaspir basin 143 and 685 million metric tons respectively. The coal is high volatile, low sulphur, bituminous type. It can be used for different forms of thermal conversion. (author)

  3. Plate motions, Gondwana Dinosaurs, Noah's Arks, Beached Viking Funeral Ships, Ghost Ships, and Landspans

    Directory of Open Access Journals (Sweden)

    Louis L. Jacobs

    2011-03-01

    Full Text Available Gondwana landmasses have served as large-scale biogeographic Noah's Arks and Beached Viking Funeral Ships, as defined by McKenna. The latitudinal trajectories of selected Gondwana dinosaur localities were traced through time in order to evaluate their movement through climate zones relative to those in which they originally formed. The dispersal of fauna during the breakup of Gondwana may have been facilitated by the presence of offshelf islands forming landspans (sensu Iturralde-Vinent and MacPhee in the Equatorial Atlantic Gateway and elsewhere.As massas de terra do Gondwana serviram como Arcas de Noe biogeograficas de grande escala e Navios Funerarios Vikings encalhados, conforme definido por McKenna. As trajetorias latitudinais de areas selecionadas de dinossauros do Gondwana foram tracadas ao longo do tempo a fim de avaliar seu movimento atraves de zonas climaticas relativas aquelas nas quais elas foram originalmente formadas. A dispersao da fauna durante a quebra do Gondwana pode ter sido facilitada pela presenca de ilhas oceanicas formando extensoes de terra (sensu Iturralde-Vinent e MacPhee na entrada do Atlantico Equatorial e em outros lugares.

  4. Reconstruction of ancestral protein sequences and its applications

    Directory of Open Access Journals (Sweden)

    Grishin Nick V

    2004-09-01

    Full Text Available Abstract Background Modern-day proteins were selected during long evolutionary history as descendants of ancient life forms. In silico reconstruction of such ancestral protein sequences facilitates our understanding of evolutionary processes, protein classification and biological function. Additionally, reconstructed ancestral protein sequences could serve to fill in sequence space thus aiding remote homology inference. Results We developed ANCESCON, a package for distance-based phylogenetic inference and reconstruction of ancestral protein sequences that takes into account the observed variation of evolutionary rates between positions that more precisely describes the evolution of protein families. To improve the accuracy of evolutionary distance estimation and ancestral sequence reconstruction, two approaches are proposed to estimate position-specific evolutionary rates. Comparisons show that at large evolutionary distances our method gives more accurate ancestral sequence reconstruction than PAML, PHYLIP and PAUP*. We apply the reconstructed ancestral sequences to homology inference and functional site prediction. We show that the usage of hypothetical ancestors together with the present day sequences improves profile-based sequence similarity searches; and that ancestral sequence reconstruction methods can be used to predict positions with functional specificity. Conclusions As a computational tool to reconstruct ancestral protein sequences from a given multiple sequence alignment, ANCESCON shows high accuracy in tests and helps detection of remote homologs and prediction of functional sites. ANCESCON is freely available for non-commercial use. Pre-compiled versions for several platforms can be downloaded from ftp://iole.swmed.edu/pub/ANCESCON/.

  5. East Gondwana ancestry of the sunflower alliance of families

    OpenAIRE

    Bremer, Kåre; Gustafsson, Mats H. G.

    1997-01-01

    The sunflower alliance of families comprises nearly 10% of all flowering plant species and includes the largest of all plant families, the sunflower family Asteraceae, which has 23,000 species, and the bellflower family Campanulaceae. Both are worldwide in distribution, but the majority of their species occur in the northern hemisphere. Recently it has been shown that a number of small, woody families from the Australian–Southwest Pacific area also belong in this relationship. Here we add yet...

  6. Correlation of the middle Lochkovian (Lower Devonian) conodont successions in peri-Gondwana key localities

    Czech Academy of Sciences Publication Activity Database

    Valenzuela-Ríos, J. I.; Slavík, Ladislav; Calvo, H.; Hušková, Aneta; Liao, J-C.

    Rabat : Royaume du Maroc Universite Mohammed V-Agdal Institut Scientifique, 2013 - (El Hassani, A.; Becker, T.; Tahiri, A.). s. 123-124 ISSN 0251-4249. [International Field Symposium "The Devonian and Lower Carboniferous of northern Gondwana". 22.03.2013-29.03.2013, Rabat] Institutional support: RVO:67985831 Keywords : conodonts * Devonian * Lochkovian Subject RIV: DB - Geology ; Mineralogy

  7. Reconstruction of ancestral protein sequences and its applications

    OpenAIRE

    Grishin Nick V; Pei Jimin; Cai Wei

    2004-01-01

    Abstract Background Modern-day proteins were selected during long evolutionary history as descendants of ancient life forms. In silico reconstruction of such ancestral protein sequences facilitates our understanding of evolutionary processes, protein classification and biological function. Additionally, reconstructed ancestral protein sequences could serve to fill in sequence space thus aiding remote homology inference. Results We developed ANCESCON, a package for distance-based phylogenetic ...

  8. Molecular paleontology: a biochemical model of the ancestral ribosome

    OpenAIRE

    Hsiao, Chiaolong; Lenz, Timothy K.; Peters, Jessica K; Fang, Po-Yu; Schneider, Dana M.; Anderson, Eric J.; Preeprem, Thanawadee; Bowman, Jessica C.; O'Neill, Eric B.; Lie, Lively; Athavale, Shreyas S.; Gossett, J. Jared; Trippe, Catherine; Murray, Jason; Anton S. Petrov

    2013-01-01

    Ancient components of the ribosome, inferred from a consensus of previous work, were constructed in silico, in vitro and in vivo. The resulting model of the ancestral ribosome presented here incorporates ∼20% of the extant 23S rRNA and fragments of five ribosomal proteins. We test hypotheses that ancestral rRNA can: (i) assume canonical 23S rRNA-like secondary structure, (ii) assume canonical tertiary structure and (iii) form native complexes with ribosomal protein fragments. Footprinting exp...

  9. Isolation of ancestral sylvatic dengue virus type 1, Malaysia.

    Science.gov (United States)

    Teoh, Boon-Teong; Sam, Sing-Sin; Abd-Jamil, Juraina; AbuBakar, Sazaly

    2010-11-01

    Ancestral sylvatic dengue virus type 1, which was isolated from a monkey in 1972, was isolated from a patient with dengue fever in Malaysia. The virus is neutralized by serum of patients with endemic DENV-1 infection. Rare isolation of this virus suggests a limited spillover infection from an otherwise restricted sylvatic cycle. PMID:21029545

  10. Isolation of Ancestral Sylvatic Dengue Virus Type 1, Malaysia

    OpenAIRE

    Teoh, Boon-Teong; Sam, Sing-Sin; Abd-Jamil, Juraina; AbuBakar, Sazaly

    2010-01-01

    Ancestral sylvatic dengue virus type 1, which was isolated from a monkey in 1972, was isolated from a patient with dengue fever in Malaysia. The virus is neutralized by serum of patients with endemic DENV-1 infection. Rare isolation of this virus suggests a limited spillover infection from an otherwise restricted sylvatic cycle.

  11. Are survival processing memory advantages based on ancestral priorities?

    Science.gov (United States)

    Soderstrom, Nicholas C; McCabe, David P

    2011-06-01

    Recent research has suggested that our memory systems are especially tuned to process information according to its survival relevance, and that inducing problems of "ancestral priorities" faced by our ancestors should lead to optimal recall performance (Nairne & Pandeirada, Cognitive Psychology, 2010). The present study investigated the specificity of this idea by comparing an ancestor-consistent scenario and a modern survival scenario that involved threats that were encountered by human ancestors (e.g., predators) or threats from fictitious creatures (i.e., zombies). Participants read one of four survival scenarios in which the environment and the explicit threat were either consistent or inconsistent with ancestrally based problems (i.e., grasslands-predators, grasslands-zombies, city-attackers, city-zombies), or they rated words for pleasantness. After rating words based on their survival relevance (or pleasantness), the participants performed a free recall task. All survival scenarios led to better recall than did pleasantness ratings, but recall was greater when zombies were the threat, as compared to predators or attackers. Recall did not differ for the modern (i.e., city) and ancestral (i.e., grasslands) scenarios. These recall differences persisted when valence and arousal ratings for the scenarios were statistically controlled as well. These data challenge the specificity of ancestral priorities in survival-processing advantages in memory. PMID:21327372

  12. Gondwana breakup via double-saloon-door rifting and seafloor spreading in a backarc basin during subduction rollback

    Science.gov (United States)

    Martin, A. K.

    2007-12-01

    attached to Southern Patagonia/West Antarctic Peninsula, while the Ellsworth Whitmore Terrane is combined with the Thurston Island Block; paleogeographies demonstrate rifting and extension in a backarc environment relative to a Pacific margin subduction zone/accretionary wedge where simultaneous crustal shortening occurs; a ridge jump towards the subduction zone from east of the Falkland Islands to the Rocas Verdes Basin evinces subduction rollback; this ridge jump combined with backarc extension isolated an area of thicker continental crust — The Falkland Islands Block; well-documented EW oriented seafloor spreading anomalies in the Weddell Sea are perpendicular to the subduction zone and propagate in the opposite direction to rollback; the dextral strike-slip Gastre and sub-parallel faults form one boundary of the Gondwana subduction rollback, whereas the other boundary may be formed by inferred sinistral strike-slip motion between a combined Thurston Island/Ellsworth Whitmore Terrane and Marie Byrd Land/East Antarctica.

  13. Ordovician K-bentonites in the Argentine Precordillera: relations to Gondwana margin evolution

    Science.gov (United States)

    Huff, W.D.; Bergstrom, Stig M.; Kolata, Dennis R.; Cingolani, C.A.; Astini, R.A.

    1998-01-01

    This paper is included in the Special Publication entitled 'The proto- Andean margin of Gondwana', edited by R.J. Pankhurst and C.W. Rapela. Ordovician K-bentonites have now been recorded from >20 localities in the vicinity of the Argentine Precordillera. Most occur in the eastern thrust belts, in the San Juan Limestone and the overlying the Gualcamayo Formation, but a few ash beds are known also from the central thrust belts. The oldest occur in the middle Arenig I, victoriae lunatus graptolite (Oe. evae conodont) Zone, and the youngest in the middle Llanvirn P. elegans (P. suecicus) Zone. Mineralogical characteristics, typical of other Ordovician K-bentonites, include a matrix of illite/smectite mixed-layer clay and a typical felsic volcanic phenocryst assemblage: biotite, beta-form quartz, alkali and plagioclase feldspar, apatite, and zircon, with lesser amounts of hornblende, clinopyroxene, titanite and Fe-Ti oxides. The proportions of the mineral phases and variations in their crystal chemistry are commonly unique to individual (or small groups of) K-bentonite beds. Glass melt inclusions preserved in quartz are rhyolitic in composition. The sequence is unique in its abundance of K-bentonite beds, but a close association between the Precordillera and other Ordovician sedimentary basins cannot be established. The ash distribution is most consistent with palaeogeographical reconstructions in which early Ordovician drifting of the Precordillera occurred in proximity to one or more volcanic arcs, and with eventual collision along the Andean margin of Gondwana during the mid-Ordovician Ocloyic event of the Famatinian orogeny. The Puna-Famatina terrane northeast of the Precordillera might have served as the source of the K-bentonite ashes, possibly in concert with active arc magmatism on the Gondwana plate itself.

  14. A palynostratigraphic study of Lower Gondwana sediments from Bandar coalfield, Nagpur district, Maharashtra

    Energy Technology Data Exchange (ETDEWEB)

    Sabina, K.P.; Mahesh, S.; Bilwa, L.M. [University of Mysore, Mysore (India)

    2007-04-15

    Core samples of Borehole MBG-23 of Gokul Block, Bandar Coalfield have been analyzed palynologically. Shaly coal and shale occurring between the depth 52.3 43 m have been found to be rich in miospores and a statistical analysis of these samples have revealed the abundance of non-striate disaccate genera based on which Scheuringipollenites assemblage zone has been recognised which suggests Lower Barakar affinity (Early Permian). This assemblage zone shows broad similarities with the Lower Barakar mioflora of other Lower Gondwana basins of India.

  15. A review of the Late Cambrian (Furongian) palaeogeography in the western Mediterranean region, NW Gondwana

    Science.gov (United States)

    Álvaro, J. Javier; Ferretti, Annalisa; González-Gómez, Cristina; Serpagli, Enrico; Tortello, M. Franco; Vecoli, Marco; Vizcaïno, Daniel

    2007-11-01

    The Cambrian-Ordovician transition of the western Mediterranean region (NW Gondwana) is characterized by the record of major erosive unconformities with gaps that range from a chronostratigraphic stage to a series. The hiatii are diachronous and involved progressively younger strata along the Gondwanan margin, from SW (Morocco) to NE (Montagne Noire). They can be related to development of a multi-stage rifting (further North), currently connected to the opening of the Rheic Ocean, and concomitant erosion on southern rift shoulders. The platforms of this margin of Gondwana occupied temperate-water, mid latitudes and were dominated by siliciclastic sedimentation, while carbonate factories were only episodically active in the Montagne-Noire platform. The Upper Cambrian is devoid of significant gaps in the southern Montagne Noire and the Iberian Chains. There, the sedimentation took place in a transgressive-dominated depositional system, with common offshore deposits and clayey substrates, and was bracketed by two major regressive trends. The Late Cambrian is also associated with the record of volcanic activity ( e.g., in the Cantabrian and Ossa-Morena zones, and the northern Montagne Noire), and widespread development of a tectonic instability that led to the episodic establishment of palaeotopographies and record of slope-related facies associations. Several immigration events are recognized throughout the latest Middle Cambrian, Late Cambrian and Tremadocian. The trilobites show a stepwise replacement of Acado-Baltic-type families ( e.g., the conocoryphid-paradoxidid-solenopleurid assemblage) characterized by: (i) a late Languedocian (latest Middle Cambrian) co-occurrence of Middle Cambrian trilobite families with the first anomocarid, dorypygid and proasaphiscid invaders; (ii) a Late Cambrian immigration replacing previous faunas, composed of trilobites (aphelaspidids, catillicephalids, ceratopygids, damesellids, eulomids, idahoiids, linchakephalids, lisariids

  16. Geology and coal bed methane resource potential of the Gondwana Barapukuria Coal Basin, Dinajpur, Bangladesh

    Energy Technology Data Exchange (ETDEWEB)

    Islam, Md. Rafiqul; Hayashi, Daigoro [Department of Physics and Earth Sciences Faculty of Science, University of the Ryukyus, Okinawa, 903-0213 (Japan)

    2008-08-05

    With an area of 5.16 km{sup 2}, the Barapukuria coal deposit is one of the five largest Gondwana coal basins in Bangladesh, and is located in the north west of the country close to the towns of Dinajpur and Saidpur. The existence of the basin was initially indicated by a negative gravity anomaly in oil and gas exploration. Exploration for the deposit was commenced by the Geological Survey of Bangladesh (GSB), with seven surface boreholes that confirmed the existence of a significant coal deposit. The deposit occurs as an asymmetrical synclinal structure with an axis striking approximately N-S. The deposit is limited to the east by a large normal fault which has displaced Archaean metamorphics against the Gondwana sediments. The coal-bearing sediments are comprised of Gondwana Permian-age sandstones, siltstones, subordinate carbonaceous shales, and six correlated coal seams. The Gondwana sediments are unconformably overlain by Tertiary and Quaternary deposits, against which the coal seams are successively subcropped to the west. Within the structural limits of the basin, approximately 377 Mt coal in-situ has been quantified in the six coal seams that range in depth from 118 to 518 m below surface. Due to the synclinal nature of the deposit, the upper coal seams, designated I to V, occur over diminishing areal extent with decreasing depth. The principal seam of interest is the lowermost Seam VI, with a variable thickness across the deposit from 22 m in the northern part of the deposit to more than 42 m in the southern and eastern areas. Development of the Barapukuria Mine, the country's first coal mine, commenced in 1996 with the construction of two vertical shafts. Coal production from Seam VI began in 2005 and continues at the present time. Seam VI coal is high volatile B bituminous rank. About 34 Mt of coal has been estimated as recoverable resources, utilising descensional multi-slice longwall mining. The mine design and development have been severely

  17. Multiway admixture deconvolution using phased or unphased ancestral panels.

    Science.gov (United States)

    Churchhouse, Claire; Marchini, Jonathan

    2013-01-01

    We describe a novel method for inferring the local ancestry of admixed individuals from dense genome-wide single nucleotide polymorphism data. The method, called MULTIMIX, allows multiple source populations, models population linkage disequilibrium between markers and is applicable to datasets in which the sample and source populations are either phased or unphased. The model is based upon a hidden Markov model of switches in ancestry between consecutive windows of loci. We model the observed haplotypes within each window using a multivariate normal distribution with parameters estimated from the ancestral panels. We present three methods to fit the model-Markov chain Monte Carlo sampling, the Expectation Maximization algorithm, and a Classification Expectation Maximization algorithm. The performance of our method on individuals simulated to be admixed with European and West African ancestry shows it to be comparable to HAPMIX, the ancestry calls of the two methods agreeing at 99.26% of loci across the three parameter groups. In addition to it being faster than HAPMIX, it is also found to perform well over a range of extent of admixture in a simulation involving three ancestral populations. In an analysis of real data, we estimate the contribution of European, West African and Native American ancestry to each locus in the Mexican samples of HapMap, giving estimates of ancestral proportions that are consistent with those previously reported. PMID:23136122

  18. Palynomorphs of Permian Gondwana coal from borehole GDH-38, Barapukuria Coal Basin, Bangladesh

    Energy Technology Data Exchange (ETDEWEB)

    Akhtar, A.; Kosanke, R.M. [Geological Survey of Bangladesh, Dhaka (Bangladesh)

    2000-07-01

    Thirty-two core samples of Permian Gondwana coal from three coal beds of borehole GDH-38, Barapukuria Coal Basin, Dinajpur, Bangladesh, were collected for palynological analysis. The lower coal bed (331.5-372.5 m) can easily be differentiated from the upper two coal beds by the presence of Alisporites, Cordaitina, Corisaccites, Hamiapollenites, Leuckisporites, Nuskoisporites, Tumoripollenites, Vestgisporites and Vittatina. It is difficult to palynologically differentiate the middle (198.1-208 m) and upper (162.3-172.9 m) coal beds as they contain a very limited number of specimens by which they can be identified. The middle bed is distinguished by the presence of Microbaculispora and Weylandites and the upper bed by the presence of a single taxon Acanthotriletes. Some of the vesiculate or saccate taxa extracted from these coal beds are typical of those occurring in Permian strata of Gondwana in India, South Africa, South America, Russia, Australia and Antarctica. They are thought to be derived from Glossopteris flora, which is characterised by an abundance of Pteridospermic plants of the gymnosperm group.

  19. Palynomorphs of Permian Gondwana coal from borehole GDH-38, Barapukuria Coal Basin, Bangladesh

    Science.gov (United States)

    Akhtar, A.; Kosanke, R. M.

    2000-07-01

    Thirty-two core samples of Permian Gondwana coal from three coal beds of borehole GDH-38, Barapukuria Coal Basin, Dinajpur, the north-northwestern part of Bangladesh, have been collected for palynological analysis. All samples except one yielded palynomorphs and some samples contain well-preserved and abundant palynomorphs of the gymnospermal and cryptogamic groups that are considered to be useful for future correlation studies. The lower coal bed (331.6-372.5 m) can easily be differentiated from the upper two coal beds by the presence of Alisporites, Cordaitina, Corisaccites, Hamiapollenites, Leuckisporites, Nuskoisporites, Tumoripollenites, Vestgisporites and Vittatina. It is difficult to palynologically differentiate the middle (198.1-208 m) and upper (162.3-172.9 m) coal beds as they contain a very limited number of specimens by which they can be identified. The middle bed is distinguished by the presence of Microbaculispora and Weylandites and the upper bed by the presence of a single taxon Acanthotriletes. Some of the vesiculate or saccate taxa extracted from these coal beds are typical of those occurring in Permian strata of Gondwana in India, South Africa, South America, Russia, Australia and Antarctica. They are thought to be derived from Glossopteris flora, which is characterised by an abundance of Pteridospermic plants of the gymnosperm group.

  20. Ancestral gene and "complementary" antibody dominate early ontogeny.

    Science.gov (United States)

    Arend, Peter

    2013-05-01

    According to N.K. Jerne the somatic generation of immune recognition occurs in conjunction with germ cell evolution and precedes the formation of the zygote, i.e. operates before clonal selection. We propose that it is based on interspecies inherent, ancestral forces maintaining the lineage. Murine oogenesis may be offered as a model. So in C57BL/10BL sera an anti-A reactive, mercapto-ethanol sensitive glycoprotein of up to now unknown cellular origin, but exhibiting immunoglobulin M character, presents itself "complementary" to a syngeneic epitope, which encoded by histocompatibility gene A or meanwhile accepted ancestor of the ABO gene family, arises predominantly in ovarian tissue and was detected statistically significant exclusively in polar glycolipids. Reports either on loss, pronounced expressions or de novo appearances of A-type structures in various conditions of accelerated growth like germ cell evolution, wound healing, inflammation and tumor proliferation in man and ABO related animals might show the dynamics of ancestral functions guarantying stem cell fidelity in maturation and tissue renewal processes. Procedures vice versa generating pluripotent stem cells for therapeutical reasons may indicate, that any artificially started growth should somehow pass through the germ line from the beginning, where according to growing knowledge exclusively the oocyte's genome provides a completely channeling ancestral information. In predatory animals such as the modern-day sea anemone, ancestral proteins, particularly those of the p53 gene family govern the reproduction processes, and are active up to the current mammalian female germ line. Lectins, providing the dual function of growth promotion and defense in higher plants, are suggested to represent the evolutionary precursors of the mammalian immunoglobulin M molecules, or protein moiety implying the greatest functional diversity in nature. And apart from any established mammalian genetic tree, a common vetch

  1. Pacific Standard

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The United States pushes for greater economic integration of the Asia-Pacific region Barack Obama has been an active free trade promoter in recent months. The U.S. president signed free trade agreements with South Korea,

  2. First record of the early Sheinwoodian carbon isotope excursion (ESCIE from the Barrandian area of northwestern peri-Gondwana

    Directory of Open Access Journals (Sweden)

    Jiri Frýda

    2015-02-01

    Full Text Available The δ13C record from an early Sheinwoodian limestone unit in the Prague Basin suggests its deposition during the time of the early Sheinwoodian carbon isotope excursion (ESCIE. The geochemical data set represents the first evidence for the ESCIE in the Prague Basin which was located in high latitudes on the northwestern peri-Gondwana shelf during early Silurian times.

  3. Ancestral Origins and Genetic History of Tibetan Highlanders.

    Science.gov (United States)

    Lu, Dongsheng; Lou, Haiyi; Yuan, Kai; Wang, Xiaoji; Wang, Yuchen; Zhang, Chao; Lu, Yan; Yang, Xiong; Deng, Lian; Zhou, Ying; Feng, Qidi; Hu, Ya; Ding, Qiliang; Yang, Yajun; Li, Shilin; Jin, Li; Guan, Yaqun; Su, Bing; Kang, Longli; Xu, Shuhua

    2016-09-01

    The origin of Tibetans remains one of the most contentious puzzles in history, anthropology, and genetics. Analyses of deeply sequenced (30×-60×) genomes of 38 Tibetan highlanders and 39 Han Chinese lowlanders, together with available data on archaic and modern humans, allow us to comprehensively characterize the ancestral makeup of Tibetans and uncover their origins. Non-modern human sequences compose ∼6% of the Tibetan gene pool and form unique haplotypes in some genomic regions, where Denisovan-like, Neanderthal-like, ancient-Siberian-like, and unknown ancestries are entangled and elevated. The shared ancestry of Tibetan-enriched sequences dates back to ∼62,000-38,000 years ago, predating the Last Glacial Maximum (LGM) and representing early colonization of the plateau. Nonetheless, most of the Tibetan gene pool is of modern human origin and diverged from that of Han Chinese ∼15,000 to ∼9,000 years ago, which can be largely attributed to post-LGM arrivals. Analysis of ∼200 contemporary populations showed that Tibetans share ancestry with populations from East Asia (∼82%), Central Asia and Siberia (∼11%), South Asia (∼6%), and western Eurasia and Oceania (∼1%). Our results support that Tibetans arose from a mixture of multiple ancestral gene pools but that their origins are much more complicated and ancient than previously suspected. We provide compelling evidence of the co-existence of Paleolithic and Neolithic ancestries in the Tibetan gene pool, indicating a genetic continuity between pre-historical highland-foragers and present-day Tibetans. In particular, highly differentiated sequences harbored in highlanders' genomes were most likely inherited from pre-LGM settlers of multiple ancestral origins (SUNDer) and maintained in high frequency by natural selection. PMID:27569548

  4. Record of Lower Gondwana megafloral assemblage from Lower Kamthi Formation of Ib River Coalfield, Orissa, India

    Indian Academy of Sciences (India)

    Shreerup Goswami

    2006-03-01

    Recent investigations carried out in the Ib River Coalfield, Mahanadi Master Basin, Orissa, identified some fossiliferous beds in the Lower Gondwana deposits. Two exposures of the Lower Kamthi Formation yielded diverse and abundant plant remains, which include Neomariopteris, Vertebraria, and a scale leaf along with 14 Glossopteris species otherwise mapped as Barren Measures and Upper Kamthi formations. Glossopteris indica dominates the flora (22.78%) followed by G. communis (17.72%) and G. browniana (13.92%). Based on megafloral assemblages, different beds exposed at Gopalpur and Laxamanpur Pahar are assigned here to the Lower Kamthi Formation (Late Permian). The floristic composition suggests that a warm and humid climate prevailed during the Late Permian. The status of the Kamthi Formation in the Ib River Coalfield has been redefined in the present study.

  5. Extending the Cantabrian Orocline to two continents (from Gondwana to Laurussia). Paleomagnetism from South Ireland

    Science.gov (United States)

    Pastor-Galán, Daniel; Ursem, Bart; Meere, Patrick A.; Langereis, Cor

    2015-12-01

    Regional Variscan structure in southern Ireland follows a gentle arcuate trend of ca. 25° concave to the SE that apparently follows the geometry of the Cantabrian Orocline (NW Iberia) when Iberia is restored to its position prior to the opening of the Biscay Bay. We report paleomagnetic results from Devonian and Carboniferous rocks in southern Ireland: (i) a pervasive and consistent remagnetization during the Late Carboniferous and (ii) an average rotation of ∼25° counterclockwise with respect to the Global Apparent Polar Wander Path and kinematically compatible with the Cantabrian Orocline. These results support the participation of Laurussia in the formation of the Cantabrian Orocline involving, at least, southern Ireland and the South Portuguese Zone (S Iberia). We conclude that a Greater Cantabrian Orocline extends beyond its current boundaries to include shear zones in the Variscan hinterland and the Rheic Ocean suture, thereby enlarging its size to plate-scale affecting as it does the Laurussia and Gondwana margins.

  6. Preliminary environmental analysis of Gondwana in Candiota Region, Rio Grande do Sul

    International Nuclear Information System (INIS)

    The geological results obtained in the Candiota Region by NUCLEBRAS, during the evaluation of the uranium economic potential from basal Gondwana Sequence - Itarare Group and Rio Bonito Formation - at South-East of the Parana Sedimentary Basin, are studied. The analysis of 18 geologic sections (scales 1:5.000 x 1:500), 21 drill holes and fotogeologic interpretation in the scale 1:50.000, are included. The Itarare Group sedimentation was conditioned by paleo - relief with valleys formed from differential erosion on 'horst - graben' structures. The deposition of its rhythmites, diamictites and siltstones was made in periglacial and marine environments. The sedimentation of the Rio Bonito Formation is related to the main Itarare Group depositional axes. The typical lithologies are: sandstones, siltstones, mudstones and coals, representing progradational fluvial sediments over coastal - plain areas. (Author)

  7. Fast phylogeny reconstruction through learning of ancestral sequences

    CERN Document Server

    Mihaescu, Radu; Rao, Satish

    2008-01-01

    Given natural limitations on the length DNA sequences, designing phylogenetic reconstruction methods which are reliable under limited information is a crucial endeavor. There have been two approaches to this problem: reconstructing partial but reliable information about the tree (\\cite{Mo07, DMR08,DHJ06,GMS08}), and reaching "deeper" in the tree through reconstruction of ancestral sequences. In the latter category, \\cite{DMR06} settled an important conjecture of M.Steel, showing that, under the CFN model of evolution, all trees on $n$ leaves with edge lengths bounded by the Ising model phase transition can be recovered with high probability from genomes of length $O(\\log n)$ with a polynomial time algorithm. Their methods had a running time of $O(n^{10})$. Here we enhance our methods from \\cite{DHJ06} with the learning of ancestral sequences and provide an algorithm for reconstructing a sub-forest of the tree which is reliable given available data, without requiring a-priori known bounds on the edge lengths o...

  8. The ancestral process of long term seed bank models

    CERN Document Server

    Blath, Jochen; Kurt, Noemi; Spanò, Dario

    2012-01-01

    We present a new model for the evolution of genetic types in the presence of so-called seed banks, i.e., where individuals may obtain their genetic type from ancestors which have lived in the near as well as the very far past. The classical Wright-Fisher model, as well as a seed bank model with bounded age distribution considered by Kaj, Krone and Lascoux (2001) are special cases of our model. We discern three parameter regimes of the seed bank age distribution, which lead to substantially different behaviour in terms of genetic variability, in particular with respect to fixation of types and time to the most recent common ancestor. We prove that for age distributions with finite mean, the rescaled ancestral process converges to a time-changed Kingman coalescent, while in the case of infinite mean, ancestral lineages might not merge at all with positive probability. Further, we present a construction of the forward in time process in equilibrium. The mathematical methods are based on renewal theory, the urn p...

  9. Global Alignment of Molecular Sequences via Ancestral State Reconstruction

    CERN Document Server

    Andoni, Alexandr; Hassidim, Avinatan; Roch, Sebastien

    2009-01-01

    Molecular phylogenetic techniques do not generally account for such common evolutionary events as site insertions and deletions (known as indels). Instead tree building algorithms and ancestral state inference procedures typically rely on substitution-only models of sequence evolution. In practice these methods are extended beyond this simplified setting with the use of heuristics that produce global alignments of the input sequences--an important problem which has no rigorous model-based solution. In this paper we consider a new version of the multiple sequence alignment in the context of stochastic indel models. More precisely, we introduce the following {\\em trace reconstruction problem on a tree} (TRPT): a binary sequence is broadcast through a tree channel where we allow substitutions, deletions, and insertions; we seek to reconstruct the original sequence from the sequences received at the leaves of the tree. We give a recursive procedure for this problem with strong reconstruction guarantees at low mut...

  10. Haplotype ancestral AH8.1 dans la mucoviscidose

    OpenAIRE

    Beucher, Julie

    2012-01-01

    La mucoviscidose est une maladie à transmission autosomique récessive, due à des mutations du gène CFTR. Les patients, partageant de mêmes mutations de CFTR et un même environnement, ont une expression phénotypique variable, suggérant l'influence d'autres gènes modifiant la sévérité de la maladie, appelés gènes modificateurs. L'atteinte respiratoire, caractérisée par une inflammation exacerbée, est un facteur principal de morbimortalité. L'haplotype ancestral AH8.1, impliqué dans la réponse i...

  11. Ancestral genome inference using a genetic algorithm approach.

    Science.gov (United States)

    Gao, Nan; Yang, Ning; Tang, Jijun

    2013-01-01

    Recent advancement of technologies has now made it routine to obtain and compare gene orders within genomes. Rearrangements of gene orders by operations such as reversal and transposition are rare events that enable researchers to reconstruct deep evolutionary histories. An important application of genome rearrangement analysis is to infer gene orders of ancestral genomes, which is valuable for identifying patterns of evolution and for modeling the evolutionary processes. Among various available methods, parsimony-based methods (including GRAPPA and MGR) are the most widely used. Since the core algorithms of these methods are solvers for the so called median problem, providing efficient and accurate median solver has attracted lots of attention in this field. The "double-cut-and-join" (DCJ) model uses the single DCJ operation to account for all genome rearrangement events. Because mathematically it is much simpler than handling events directly, parsimony methods using DCJ median solvers has better speed and accuracy. However, the DCJ median problem is NP-hard and although several exact algorithms are available, they all have great difficulties when given genomes are distant. In this paper, we present a new algorithm that combines genetic algorithm (GA) with genomic sorting to produce a new method which can solve the DCJ median problem in limited time and space, especially in large and distant datasets. Our experimental results show that this new GA-based method can find optimal or near optimal results for problems ranging from easy to very difficult. Compared to existing parsimony methods which may severely underestimate the true number of evolutionary events, the sorting-based approach can infer ancestral genomes which are much closer to their true ancestors. The code is available at http://phylo.cse.sc.edu. PMID:23658708

  12. Bunbury Basalt: Gondwana breakup products or earliest vestiges of the Kerguelen mantle plume?

    Science.gov (United States)

    Olierook, Hugo K. H.; Jourdan, Fred; Merle, Renaud E.; Timms, Nicholas E.; Kusznir, Nick; Muhling, Janet R.

    2016-04-01

    In this contribution, we investigate the role of a mantle plume in the genesis of the Bunbury Basalt using high-precision 40Ar/39Ar geochronology and whole-rock geochemistry, and by using crustal basement thickness of the eastern Indian Ocean and the western Australian continent. The Bunbury Basalt is a series of lava flows and deep intrusive rocks in southwestern Australia thought to be the earliest igneous products from the proto-Kerguelen mantle plume. Nine new plateau ages indicate that the Bunbury Basalt erupted in three distinct phases, at 136.96 ± 0.43 Ma, 132.71 ± 0.43 Ma and 130.45 ± 0.82 Ma. All Bunbury Basalt samples are enriched tholeiitic basalts with varying contributions from the continental lithosphere that are similar to other Kerguelen plume-products. Based on plate reconstructions and the present geochronological constraints, the eruption of the oldest Bunbury Basalt preceded the emplacement of the Kerguelen large igneous province by at least 10-20 m.y. Such age differences between a precursor and the main magmatic event are not uncommon but do require additional explanation. Low crustal stretching factors beneath the Bunbury Basalt (β ≈ 1.4) indicate that decompression melting could not have been generated from asthenospheric mantle with a normal chemistry and geotherm. An elevated geotherm from the mantle plume coupled with the geochemical similarity between the Bunbury Basalt and other Kerguelen plume-products suggests a shared origin exists. However, new age constraints of the oldest Bunbury Basalt are synchronous with the breakup of eastern Gondwana and the initial opening of the Indian Ocean at ca. 137-136 Ma, which may mean an alternative explanation is possible. The enriched geochemistry can equally be explained by a patch of shallow mantle beneath the southern Perth Basin. The patch may have been enriched during Gondwana suturing at ca. 550-500 Ma, during early rifting events by magmatic underplating or by intruded melts into the

  13. An Upper Paleozoic bio-chronostratigraphic scheme for the western margin of Gondwana

    Science.gov (United States)

    Césari, Silvia N.; Limarino, Carlos O.; Gulbranson, Erik L.

    2011-05-01

    The Carboniferous and Permian fossiliferous sequences of the central-western Argentina contain abundant plant remains, palynomorphs and invertebrates. They include a continuous record of large distribution in the Paganzo, Rio Blanco, Calingasta-Uspallata and San Rafael Basins. The most recent biostratigraphic schemes recognize a floristic succession represented by the biozones: Archaeosigillaria-Frenguellia (AF Biozone), Frenguellia eximia-Nothorhacopteris kellaybelenensis-Cordaicarpus cesarii (FNC Biozone), Nothorhacopteris-Botrychiopsis- Ginkgophyllum (NBG Biozone), Interval Biozone and Gangamopteris Biozone. The associated palynological record is represented by the biozones: Reticulatisporites magnidictyus-Verrucosisporites quasigobbetti (MQ Biozone), Raistrickia densa-Convolutispora muriornata (DM Biozone), Pakhapites fusus-Vittatina subsaccata (FS Biozone), and Lueckisporites-Weylandites (LW Biozone). The precise age of the Upper Paleozoic western Gondwanan biozones has been under discussion and remains controversial to date in some regions. The main issue hampering an integrated comparison of the Gondwanan biozones was its imprecise chronostratigraphic framework. However, new studies in some Argentinian stratigraphic sections bearing floras and faunas have yielded several radiometric ages. From these 206Pb/ 238U zircon datings it is possible to determine the chronostratigraphic range of many fossiliferous assemblages in this sector of Gondwana. In this way, the AF and MQ Biozones are restricted to the Late Mississippian and they would be not younger than 335 Ma according to radiometric ages. 206Pb/ 238U ages suggest that the NBG, DMa and DMb Biozones characterize the Late Serpukhovian glacial deposits and persisted up to the Late Bashkirian. Beds containing the Interval and DMc Biozones have yielded 206Pb/ 238U ages of 312.82 ± 0.11 Ma and 310.71 ± 0.1 Ma which would indicate that both zones characterize the Moscovian. The remains of Gangamopteris Biozone

  14. Geophysical exploration for coal-bearing Gondwana basins in the states of West Bengal and Bihar in northeast India

    Energy Technology Data Exchange (ETDEWEB)

    Saha, S.N.; Roy, A.K.; Brahman, C.V.; Sastry, C.B.K.; De, M.K.

    1992-10-01

    The states of West Bengal and Bihar in northeast India are known to bear 'A' grade coal seams within Gondwana basins. An alluvium-covered area to the north of the Ajay river was considered to be prospective for the exploration of coal. Gravity and magnetic surveys were mainly carried out over an area of 1900 km[sup 2] with resistivity soundings taken at selected places. Gondwana sediments lying over basement subbasins are prospective areas for the exploration of coal. The gravity survey interpreted an 8-km wide and 20-km long depression known as the Pachami basin. This basin was drilled at several places and thick 'A' grade coal seams were intersected. The gravity survey broadly outlined the Pachami basin and several other basement depressions through gravity low contour closures. A forward modelling of a profile across the Pachami basin indicated a maximum depth of about 1.3 km to the basement at its deepest part. The magnetic map was vitiated through the presence of fluctuating high amplitude and high wavenumber anomalies due to a thick blanket of trap lying above the Gondwana sediments. Selected resistivity soundings could approximately interpret the shallow-basement depths, and the thickness and depths of the overlying trap.

  15. CO 2 degassing and trapping during hydrothermal cycles related to Gondwana rifting in eastern Australia

    Science.gov (United States)

    Uysal, I. Tonguç; Golding, Suzanne D.; Bolhar, Robert; Zhao, Jian-xin; Feng, Yue-xing; Baublys, Kim A.; Greig, Alan

    2011-10-01

    Intensive carbonate and clay mineral authigenesis took place throughout the Late Permian Bowen-Gunnedah-Sydney basin system in eastern Australia. We conducted isotopic and trace element analyses of carbonate and clay minerals from clastic sedimentary rocks of the Gunnedah Basin and the Denison Trough in the Bowen Basin. Rb-Sr isochron age data of the illitic clays are consistent with episodic hydrothermal fluid flow events that occurred in association with Gondwana rifting accompanied by alkaline magmatism at ˜85 Ma and ˜95 Ma. Stable isotope data of carbonate and clay minerals from the Gunnedah Basin are indicative of meteoric waters from a high-latitude environment as the main fluid source, whereas trace element, Sr and Nd isotope data highlight mixing of meteoric fluids with magmatic and/or crustal components, with a possible input from marine carbonates for some samples. Trace metals, oxygen and strontium isotopes of dawsonites from the Denison Trough are interpreted to have been mobilised by fluids that interacted with evolved clastic sedimentary and marine carbonate end members. According to the carbon isotope data, CO 2 for calcite and ankerite precipitation was sourced mainly from thermal degradation of organic matter and magmatism, whereas the CO 2 used for dawsonite formation is inferred to have been derived from magmatic and marine sources. In the low permeability environments (particularly in coal seams), the increasing accumulation and oversaturation of CO 2 particularly promote the precipitation of dawsonite.

  16. Pull-apart origin of the Satpura Gondwana basin, central India

    Indian Academy of Sciences (India)

    Chandan Chakraborty; Sanjoy Kumar Ghosh

    2005-06-01

    The Gondwana basins of peninsular India are traditionally considered as extensional-rift basins due to the overwhelming evidence of fault-controlled synsedimentary subsidence. These basins indeed originated under a bulk extensional tectonic regime, due to failure of the attenuated crust along pre-existing zones of weakness inherited from Precambrian structural fabrics. However, disposition of the basins and their structural architecture indicate that the kinematics of all the basins cannot be extensional. To maintain kinematic compatibility with other basins as well as the bulk lateral extension, some basins ought to be of strike-slip origin. The disposition, shape and structural architecture of the Satpura basin, central India suggest that the basin could be a pull-apart basin that developed above a releasing jog of a left-stepping strike-slip fault system defined by the Son-Narmada south fault and Tapti north fault in consequence to sinistral displacement along WSW-ENE. Development of a sedimentary basin under the above-mentioned kinematic condition was simulated in model experiments with sandpack. The shape, relative size, stratigraphic and structural architecture of the experimental basin tally with that of the Satpura basin. The experimental results also provide insights into the tectono-sedimentary evolution of the Satpura basin in particular and pull-apart basins in general.

  17. Larval cases of caddisfly (Insecta: Trichoptera) affinity in Early Permian marine environments of Gondwana.

    Science.gov (United States)

    Mouro, Lucas D; Zatoń, Michał; Fernandes, Antonio C S; Waichel, Breno L

    2016-01-01

    Caddisflies (Trichoptera) are small, cosmopolitan insects closely related to the Lepidoptera (moths and butterflies). Most caddisflies construct protective cases during their larval development. Although the earliest recognisable caddisflies date back to the early Mesozoic (Early and Middle Triassic), being particularly numerous and diverse during the Late Jurassic and Early Cretaceous, the first records of their larval case constructions are known exclusively from much younger, Early to Middle Jurassic non-marine deposits in the northern hemisphere. Here we present fossils from the Early Permian (Asselian-Sakmarian) marine deposits of Brazil which have strong morphological and compositional similarity to larval cases of caddisflies. If they are, which is very probable, these finds not only push back the fossil record of true caddisflies, but also indicate that their larvae constructed cases at the very beginning of their evolution in marine environments. Since modern caddisflies that construct larval cases in marine environments are only known from eastern Australia and New Zealand, we suggest that this marine ecology may have first evolved in western Gondwana during the Early Permian and later spread across southern Pangea. PMID:26765261

  18. Reconstructing the ancestral germ line methylation state of young repeats.

    Science.gov (United States)

    Feuerbach, Lars; Lyngsø, Rune B; Lengauer, Thomas; Hein, Jotun

    2011-06-01

    One of the key objectives of comparative genomics is the characterization of the forces that shape genomes over the course of evolution. In the last decades, evidence has been accumulated that for vertebrate genomes also epigenetic modifications have to be considered in this context. Especially, the elevated mutation frequency of 5-methylcytosine (5mC) is assumed to facilitate the depletion of CpG dinucleotides in species that exhibit global DNA methylation. For instance, the underrepresentation of CpG dinucleotides in many mammalian genomes is attributed to this effect, which is only neutralized in so-called CpG islands (CGIs) that are preferentially unmethylated and thus partially protected from rapid CpG decay. For primate-specific CpG-rich transposable elements from the ALU family, it is unclear whether their elevated CpG frequency is caused by their small age or by the absence of DNA methylation. In consequence, these elements are often misclassified in CGI annotations. We present a method for the estimation of germ line methylation from pairwise ancestral-descendant alignments. The approach is validated in a simulation study and tested on DNA repeats from the AluSx family. We conclude that a predicted unmethylated state in the germ line is highly correlated with epigenetic activity of the respective genomic region. Thus, CpG-rich repeats can be facilitated as in silico probes for the epigenetic potential of their genomic neighborhood. PMID:21212152

  19. An ancestral HIV-2/simian immunodeficiency virus peptide with potent HIV-1 and HIV-2 fusion inhibitor activity

    OpenAIRE

    Borrego, Pedro; Calado, Rita; Marcelino, José M.; Pereira, Patrícia MR; Quintas, Alexandre; Barroso, Helena; Taveira, Nuno

    2013-01-01

    "Objectives: To produce new fusion inhibitor peptides for HIV-1 and HIV-2 based on ancestral envelope sequences. Methods: HIV-2/simian immunodeficiency virus (SIV) ancestral transmembrane protein sequences were reconstructed and ancestral peptides were derived from the helical region 2 (HR2). The activity of one ancestral peptide (named P3) was examined against a panel of HIV-1 and HIV-2 primary isolates in TZM-bl cells and peripheral blood mononuclear cells and compared to ...

  20. Neoproterozoic geodynamic evolution of SW-Gondwana: a southern African perspective

    Science.gov (United States)

    Frimmel, H. E.; Basei, M. S.; Gaucher, C.

    2011-04-01

    Our current understanding of the tectonic history of the principal Pan-African orogenic belts in southwestern Africa, reaching from the West Congo Belt in the north to the Lufilian/Zambezi, Kaoko, Damara, Gariep and finally the Saldania Belt in the south, is briefly summarized. On that basis, possible links with tectono-stratigraphic units and major structures on the eastern side of the Río de la Plata Craton are suggested, and a revised geodynamic model for the amalgamation of SW-Gondwana is proposed. The Río de la Plata and Kalahari Cratons are considered to have become juxtaposed already by the end of the Mesoproterozoic. Early Neoproterozoic rifting led to the fragmentation of the northwestern (in today's coordinates) Kalahari Craton and the splitting off of several small cratonic blocks. The largest of these ex-Kalahari cratonic fragments is probably the Angola Block. Smaller fragments include the Luis Alves and Curitiba microplates in eastern Brazil, several basement inliers within the Damara Belt, and an elongate fragment off the western margin, named Arachania. The main suture between the Kalahari and the Congo-São Francisco Cratons is suspected to be hidden beneath younger cover between the West Congo Belt and the Lufilian/Zambezi Belts and probably continues westwards via the Cabo Frío Terrane into the Goiás magmatic arc along the Brasilia Belt. Many of the rift grabens that separated the various former Kalahari cratonic fragments did not evolve into oceanic basins, such as the Northern Nosib Rift in the Damara Belt and the Gariep rift basin. Following latest Cryogenian/early Ediacaran closure of the Brazilides Ocean between the Río de la Plata Craton and the westernmost fragment of the Kalahari Craton, the latter, Arachania, became the locus of a more than 1,000-km-long continental magmatic arc, the Cuchilla Dionisio-Pelotas Arc. A correspondingly long back-arc basin (Marmora Basin) on the eastern flank of that arc is recognized, remnants of which

  1. Origin of northern Gondwana Cambrian sandstone revealed by detrital zircon SHRIMP dating

    Science.gov (United States)

    Avigad, D.; Kolodner, K.; McWilliams, M.; Persing, H.; Weissbrod, T.

    2003-01-01

    Voluminous Paleozoic sandstone sequences were deposited in northern Africa and Arabia following an extended Neoproterozoic orogenic cycle that culminated in the assembly of Gondwana. We measured sensitive high-resolution ion microprobe (SHRIMP) U-Pb ages of detrital zircons separated from several Cambrian units in the Elat area of southern Israel in order to unravel their provenance. This sandstone forms the base of the widespread siliciclastic section now exposed on the periphery of the Arabian-Nubian shield in northeastern Africa and Arabia. Most of the detrital zircons we analyzed yielded Neoproterozoic concordant ages with a marked concentration at 0.55–0.65 Ga. The most likely provenance of the Neoproterozoic detritus is the Arabian-Nubian shield; 0.55–0.65 Ga was a time of posttectonic igneous activity, rift-related volcanism, and strike-slip faulting there. Of the zircons, 30% yielded pre-Neoproterozoic ages grouped at 0.9–1.1 Ga (Kibaran), 1.65–1.85 Ga, and 2.45–2.7 Ga. The majority of the pre-Neoproterozoic zircons underwent Pb loss, possibly as a consequence of the Pan-African orogeny resetting their provenance. Rocks of the Saharan metacraton and the southern Afif terrane in Saudi Arabia (∼1000 km south of Elat) are plausible sources of these zircons. Kibaran basement rocks are currently exposed more than 3000 km south of Elat (flanking the Mozambique belt), but the shape of the detrital zircons of that age and the presence of feldspar in the host sandstone are not fully consistent with such a long-distance transport. Reworking of Neoproteorozoic glacial detritus may explain the presence of Kibaran detrital zircons in the Cambrian of Elat, but the possibility that the Arabian-Nubian shield contains Kibaran rocks (hitherto not recognized) should also be explored.

  2. A new Cretaceous terrestrial ecosystem from Gondwana with the description of a new sauropod dinosaur

    Directory of Open Access Journals (Sweden)

    Jorge O. Calvo

    2007-09-01

    Full Text Available A unique site at the northern area of Patagonia (Neuquén, Argentina reveals a terrestrial ecosystem preserved in a detail never reported before in a Late Cretaceous deposit. An extraordinary diversity and abundance of fossils was found concentrated in a 0.5 m horizon in the same quarry, including a new titanosaur sauropod, Futalognkosaurus dukei n.gen., n.sp, which is the most complete giant dinosaur known so far. Several plant leaves, showing a predominance of angiosperms over gymnosperms that likely constituted the diet of F. dukei were found too. Other dinosaurs (sauropods, theropods, ornithopods, crocodylomorphs, pterosaurs, and fishes were also discovered, allowing a partial reconstruction of this Gondwanan continental ecosystem.Um depósito fóssil na região norte da Patagônia (Neuquén, Argentina revela um ecossistema nunca antes registrado a este nível de detalhes em depósitos do Cretáceo Superior. Uma diversidade e abundância extraordinária de fósseis encontra-se concentrada em uma camada de 0,5 m no mesmo sítio, incluindo um novo saurópodo titanossaurídeo, Futalognkosaurus dukei n. gen, n. sp., que é o mais completo dinossauro gigante encontrado até a presente data. Foram descobertas váriasfolhas de plantas indicando a predominância de angiospermas sobre gimnospermas que possivelmente formavam a base da dieta de F. dukei. Outros dinossauros (saurópodes, terópodes, ornitópodes, crocodilomorfos, pterossauros e peixes foram também encontrados possibilitando a reconstrução parcialdeste ecossistema continental do Gondwana.

  3. From northern Gondwana passive margin to arc dismantling: a geochemical discrimination of Ordovician volcanisms (Sardinia, Italy)

    Science.gov (United States)

    Gaggero, L.; Oggiano, G.; Buzzi, L.; Funedda, A.

    2009-04-01

    In Sardinia, one of the southernmost remain of the European Variscan belt, a crustal section through northern Gondwanan paleodomains is largely preserved. It bears significant evidence of igneous activity, recently detailed in field relationships and radiometric dating (Oggiano et al., submitted). A Cambro - Ordovician (491.7 ± 3.5 Ma ÷ 479.9 ± 2.1 Ma, LA-ICP-MS U-Pb zircon age) bimodal volcanic suite occurs with continuity in external and inner Variscan nappes of Sardinia below the so-called Sardic unconformity. The igneous suite represents an intraplate volcanic activity developed through subsequent episodes: i) an intermediate explosive and effusive volcanism, i.e. pyroclastic fall deposits and lava flows, embedded into epicontinental clastic sediments, culminating in silicic ignimbrite eruptions, and ii) mafic effusives. Geochemical data document a transitional, within-plate signature, e.g. the average Th/Ta (4.5) and La/Nb (2.7) overlap the upper continental crust values. The volcanites are characterized by slight fractionation of LREEs, nearly flat HREE abundance. The negative Eu anomaly increases towards evolved compositions. Some prominent HREE depletion (GdCN/YbCN = 13.8), and the high Nb/Y suggest a garnet-bearing source. The high 87Sr radiogenic content (87Sr/86Sr 490 Ma = 0.71169) and the epsilon Nd 490 Ma value of -6.54 for one dacite sample, imply a time integrated LREE-enriched source with a high Rb/Sr, such as a metasedimentary source. The stratigraphy of the succession and the geochemical composition of igneous members suggest a volcanic passive margin along the northern Gondwana at the early Ordovician. The bimodal Mid-Ordovician arc volcanism (465.4 ± 1.4 Ma, U-Pb zircon age; Oggiano et al., submitted) is developed in the external nappes (e.g. in Sarrabus and Sarcidano) and in the foreland occurs as clasts at the base of the Hirnantian succession (Leone et al. 1991). The Mid Ordovician sub-alkalic volcanic suite has reliable stratigraphic and

  4. Genome-wide inference of ancestral recombination graphs.

    Science.gov (United States)

    Rasmussen, Matthew D; Hubisz, Melissa J; Gronau, Ilan; Siepel, Adam

    2014-01-01

    The complex correlation structure of a collection of orthologous DNA sequences is uniquely captured by the "ancestral recombination graph" (ARG), a complete record of coalescence and recombination events in the history of the sample. However, existing methods for ARG inference are computationally intensive, highly approximate, or limited to small numbers of sequences, and, as a consequence, explicit ARG inference is rarely used in applied population genomics. Here, we introduce a new algorithm for ARG inference that is efficient enough to apply to dozens of complete mammalian genomes. The key idea of our approach is to sample an ARG of [Formula: see text] chromosomes conditional on an ARG of [Formula: see text] chromosomes, an operation we call "threading." Using techniques based on hidden Markov models, we can perform this threading operation exactly, up to the assumptions of the sequentially Markov coalescent and a discretization of time. An extension allows for threading of subtrees instead of individual sequences. Repeated application of these threading operations results in highly efficient Markov chain Monte Carlo samplers for ARGs. We have implemented these methods in a computer program called ARGweaver. Experiments with simulated data indicate that ARGweaver converges rapidly to the posterior distribution over ARGs and is effective in recovering various features of the ARG for dozens of sequences generated under realistic parameters for human populations. In applications of ARGweaver to 54 human genome sequences from Complete Genomics, we find clear signatures of natural selection, including regions of unusually ancient ancestry associated with balancing selection and reductions in allele age in sites under directional selection. The patterns we observe near protein-coding genes are consistent with a primary influence from background selection rather than hitchhiking, although we cannot rule out a contribution from recurrent selective sweeps. PMID:24831947

  5. Genome-wide inference of ancestral recombination graphs.

    Directory of Open Access Journals (Sweden)

    Matthew D Rasmussen

    Full Text Available The complex correlation structure of a collection of orthologous DNA sequences is uniquely captured by the "ancestral recombination graph" (ARG, a complete record of coalescence and recombination events in the history of the sample. However, existing methods for ARG inference are computationally intensive, highly approximate, or limited to small numbers of sequences, and, as a consequence, explicit ARG inference is rarely used in applied population genomics. Here, we introduce a new algorithm for ARG inference that is efficient enough to apply to dozens of complete mammalian genomes. The key idea of our approach is to sample an ARG of [Formula: see text] chromosomes conditional on an ARG of [Formula: see text] chromosomes, an operation we call "threading." Using techniques based on hidden Markov models, we can perform this threading operation exactly, up to the assumptions of the sequentially Markov coalescent and a discretization of time. An extension allows for threading of subtrees instead of individual sequences. Repeated application of these threading operations results in highly efficient Markov chain Monte Carlo samplers for ARGs. We have implemented these methods in a computer program called ARGweaver. Experiments with simulated data indicate that ARGweaver converges rapidly to the posterior distribution over ARGs and is effective in recovering various features of the ARG for dozens of sequences generated under realistic parameters for human populations. In applications of ARGweaver to 54 human genome sequences from Complete Genomics, we find clear signatures of natural selection, including regions of unusually ancient ancestry associated with balancing selection and reductions in allele age in sites under directional selection. The patterns we observe near protein-coding genes are consistent with a primary influence from background selection rather than hitchhiking, although we cannot rule out a contribution from recurrent selective

  6. Ancestral Genomes, Sex, and the Population Structure of Trypanosoma cruzi.

    Directory of Open Access Journals (Sweden)

    2006-03-01

    Full Text Available Acquisition of detailed knowledge of the structure and evolution of Trypanosoma cruzi populations is essential for control of Chagas disease. We profiled 75 strains of the parasite with five nuclear microsatellite loci, 24Salpha RNA genes, and sequence polymorphisms in the mitochondrial cytochrome oxidase subunit II gene. We also used sequences available in GenBank for the mitochondrial genes cytochrome B and NADH dehydrogenase subunit 1. A multidimensional scaling plot (MDS based in microsatellite data divided the parasites into four clusters corresponding to T. cruzi I (MDS-cluster A, T. cruzi II (MDS-cluster C, a third group of T. cruzi strains (MDS-cluster B, and hybrid strains (MDS-cluster BH. The first two clusters matched respectively mitochondrial clades A and C, while the other two belonged to mitochondrial clade B. The 24Salpha rDNA and microsatellite profiling data were combined into multilocus genotypes that were analyzed by the haplotype reconstruction program PHASE. We identified 141 haplotypes that were clearly distributed into three haplogroups (X, Y, and Z. All strains belonging to T. cruzi I (MDS-cluster A were Z/Z, the T. cruzi II strains (MDS-cluster C were Y/Y, and those belonging to MDS-cluster B (unclassified T. cruzi had X/X haplogroup genotypes. The strains grouped in the MDS-cluster BH were X/Y, confirming their hybrid character. Based on these results we propose the following minimal scenario for T. cruzi evolution. In a distant past there were at a minimum three ancestral lineages that we may call, respectively, T. cruzi I, T. cruzi II, and T. cruzi III. At least two hybridization events involving T. cruzi II and T. cruzi III produced evolutionarily viable progeny. In both events, the mitochondrial recipient (as identified by the mitochondrial clade of the hybrid strains was T. cruzi II and the mitochondrial donor was T. cruzi III.

  7. The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

    Energy Technology Data Exchange (ETDEWEB)

    Elkins, James G.; Kunin, Victor; Anderson, Iain; Barry, Kerrie; Goltsman, Eugene; Lapidus, Alla; Hedlund, Brian; Hugenholtz, Phil; Kyrpides, Nikos; Graham, David; Keller, Martin; Wanner, Gerhard; Richardson, Paul; Stetter, Karl O.

    2007-05-01

    Based on conserved cellular properties, all life on Earth can be grouped into different phyla which belong to the primary domains Bacteria, Archaea, and Eukarya. However, tracing back their evolutionary relationships has been impeded by horizontal gene transfer and gene loss. Within the Archaea, the kingdoms Crenarchaeota and Euryarchaeota exhibit a profound divergence. In order to elucidate the evolution of these two major kingdoms, representatives of more deeply diverged lineages would be required. Based on their environmental small subunit ribosomal (ss RNA) sequences, the Korarchaeota had been originally suggested to have an ancestral relationship to all known Archaea although this assessment has been refuted. Here we describe the cultivation and initial characterization of the first member of the Korarchaeota, highly unusual, ultrathin filamentous cells about 0.16 {micro}m in diameter. A complete genome sequence obtained from enrichment cultures revealed an unprecedented combination of signature genes which were thought to be characteristic of either the Crenarchaeota, Euryarchaeota, or Eukarya. Cell division appears to be mediated through a FtsZ-dependent mechanism which is highly conserved throughout the Bacteria and Euryarchaeota. An rpb8 subunit of the DNA-dependent RNA polymerase was identified which is absent from other Archaea and has been described as a eukaryotic signature gene. In addition, the representative organism possesses a ribosome structure typical for members of the Crenarchaeota. Based on its gene complement, this lineage likely diverged near the separation of the two major kingdoms of Archaea. Further investigations of these unique organisms may shed additional light onto the evolution of extant life.

  8. β-Propeller blades as ancestral peptides in protein evolution.

    Directory of Open Access Journals (Sweden)

    Klaus O Kopec

    Full Text Available Proteins of the β-propeller fold are ubiquitous in nature and widely used as structural scaffolds for ligand binding and enzymatic activity. This fold comprises between four and twelve four-stranded β-meanders, the so called blades that are arranged circularly around a central funnel-shaped pore. Despite the large size range of β-propellers, their blades frequently show sequence similarity indicative of a common ancestry and it has been proposed that the majority of β-propellers arose divergently by amplification and diversification of an ancestral blade. Given the structural versatility of β-propellers and the hypothesis that the first folded proteins evolved from a simpler set of peptides, we investigated whether this blade may have given rise to other folds as well. Using sequence comparisons, we identified proteins of four other folds as potential homologs of β-propellers: the luminal domain of inositol-requiring enzyme 1 (IRE1-LD, type II β-prisms, β-pinwheels, and WW domains. Because, with increasing evolutionary distance and decreasing sequence length, the statistical significance of sequence comparisons becomes progressively harder to distinguish from the background of convergent similarities, we complemented our analyses with a new method that evaluates possible homology based on the correlation between sequence and structure similarity. Our results indicate a homologous relationship of IRE1-LD and type II β-prisms with β-propellers, and an analogous one for β-pinwheels and WW domains. Whereas IRE1-LD most likely originated by fold-changing mutations from a fully formed PQQ motif β-propeller, type II β-prisms originated by amplification and differentiation of a single blade, possibly also of the PQQ type. We conclude that both β-propellers and type II β-prisms arose by independent amplification of a blade-sized fragment, which represents a remnant of an ancient peptide world.

  9. β-Propeller Blades as Ancestral Peptides in Protein Evolution

    Science.gov (United States)

    Kopec, Klaus O.; Lupas, Andrei N.

    2013-01-01

    Proteins of the β-propeller fold are ubiquitous in nature and widely used as structural scaffolds for ligand binding and enzymatic activity. This fold comprises between four and twelve four-stranded β-meanders, the so called blades that are arranged circularly around a central funnel-shaped pore. Despite the large size range of β-propellers, their blades frequently show sequence similarity indicative of a common ancestry and it has been proposed that the majority of β-propellers arose divergently by amplification and diversification of an ancestral blade. Given the structural versatility of β-propellers and the hypothesis that the first folded proteins evolved from a simpler set of peptides, we investigated whether this blade may have given rise to other folds as well. Using sequence comparisons, we identified proteins of four other folds as potential homologs of β-propellers: the luminal domain of inositol-requiring enzyme 1 (IRE1-LD), type II β-prisms, β-pinwheels, and WW domains. Because, with increasing evolutionary distance and decreasing sequence length, the statistical significance of sequence comparisons becomes progressively harder to distinguish from the background of convergent similarities, we complemented our analyses with a new method that evaluates possible homology based on the correlation between sequence and structure similarity. Our results indicate a homologous relationship of IRE1-LD and type II β-prisms with β-propellers, and an analogous one for β-pinwheels and WW domains. Whereas IRE1-LD most likely originated by fold-changing mutations from a fully formed PQQ motif β-propeller, type II β-prisms originated by amplification and differentiation of a single blade, possibly also of the PQQ type. We conclude that both β-propellers and type II β-prisms arose by independent amplification of a blade-sized fragment, which represents a remnant of an ancient peptide world. PMID:24143202

  10. The eoorthid brachiopod Apheoorthina in the Lower Ordovician of NW Argentina and the dispersal pathways along western Gondwana

    Directory of Open Access Journals (Sweden)

    Diego F. Muñoz

    2016-08-01

    Full Text Available The eoorthid brachiopod Apheoorthina is reported for the first time from the Lower Ordovician of NW Argentina. It is represented by a species similar to A. ferrigena from the Tremadocian of the Prague Basin, increasing the faunal affinities between the Central Andean Basin and the South European microcontinents, in particular the Bohemian region (Perunica. Nine out of the fourteen brachiopod genera reported from the Tremadocian of the Central Andean Basin (~64% are shared with the Mediterranean region, four of which (~28% have been recorded in the Prague Basin, and two (Kvania and Apheoorthina are restricted to the Central Andes and Perunica. Dispersal pathways around Gondwana are analyzed in the light of major factors affecting large-scale distribution of brachiopods (environment, larval capacity for dispersal, oceanic currents. The presence in Apheoorthina aff. ferrigena of a well-preserved larval protegulum measuring 420 μm in width and 210 μm in length strongly suggests that this species had planktotrophic larvae capable of long-distance dispersal. According to recent ocean-atmosphere general circulation models for the Ordovician Period, the Central Andean margin was dominated by the cold-water Antarctica Current. Despite the complex non-zonal pattern produced by current deflections around the peri-Gondwanan microcontinents, the general westward circulation sense favoured larval dispersal from the Andean region to North Africa, Avalonia, the Armorican Terrane Assemblage, and Perunica. On the other hand, the eastwards flowing Gondwana Current connected the North Gondwana waters with the South American epicontinental seas, which could explain the reversed migration of some brachiopods.

  11. Analysis of the stone ancestral hall of Guo’s tomb on Xiaotang mountainin Han dynasty architectural features

    Institute of Scientific and Technical Information of China (English)

    刘国庆

    2014-01-01

    The stone ancestral hall of Guo’s tomb in Xiaotang mountain is the earliest existing buildings on the ground in China. It has a very high historical, cultural and artistic value, and it was described by the ancient and modern scholars and experts in their books and articles. But the study of architectural of ancestral hall was emphasized from 1930s, and became a brilliant star in the Chinese historic buildings. In this article, the architectural characteristics of the stone ancestral hall are discussed through fieldworks, in order to clarify the real architecture appearance of the ancestral hall and refer more informations for comprehensive study of Xiaotang stone ancestral hall.

  12. An ancestral role for the mitochondrial pyruvate carrier in glucose-stimulated insulin secretion

    Directory of Open Access Journals (Sweden)

    Kyle S. McCommis

    2016-08-01

    Conclusions: Altogether, these studies suggest that the MPC plays an important and ancestral role in insulin-secreting cells in mediating glucose sensing, regulating insulin secretion, and controlling systemic glycemia.

  13. Mapping ancestral genomes with massive gene loss: a matrix sandwich problem.

    OpenAIRE

    Gavranović, Haris; Chauve, Cedric; Salse, Jérôme; Tannier, Eric

    2011-01-01

    MOTIVATION: Ancestral genomes provide a better way to understand the structural evolution of genomes than the simple comparison of extant genomes. Most ancestral genome reconstruction methods rely on universal markers, that is, homologous families of DNA segments present in exactly one exemplar in every considered species. Complex histories of genes or other markers, undergoing duplications and losses, are rarely taken into account. It follows that some ancestors are inaccessible by these met...

  14. Paleozoic Orogens of Mexico and the Laurentia-Gondwana Connections: an Update

    Science.gov (United States)

    Ortega-Gutierrez, F.

    2009-05-01

    The present position of Mexico in North America and the fixist tectonic models that prevailed prior to the seventies of the past century, have considered the main Paleozoic tectonic systems of Mexico as natural extensions of the orogens that fringed the eastern and southern sides of the Laurentian craton. Well known examples of pre-Mesozoic orogens in Mexico are the Oaxacan, Acatlan, and Chiapas polymetamorphic terranes, which have been correlated respectively with the Grenville and Appalachian-Ouachitan orogens of eastern North America. Nonetheless, several studies conducted during the last decade in these Mexican orogenic belts, have questioned their Laurentian connections, regarding northwestern Gondwana instead as the most plausible place for their birth and further tectonic evolution. This work pretends to approach the problem by briefly integrating the massive amount of new geological information, commonly generated through powerful dating methods such as LA-ICPM-MS on detrital zircon of sedimentary and metasedimentary units in the Paleozoic crustal blocks, which are widely exposed in southern and southeastern Mexico. The Acatlan Complex bears the closest relationships to the Appalachian orogenic system because it shows thermotectonic evidence for opening and closure of the two main oceans involved in building the Appalachian mountains in eastern Laurentia, whereas two other Paleozoic terranes in NW and SE Mexico, until recently rather geologically unknown, may constitute fundamental links between the Americas for the last-stage suturing and consolidation of western Pangea. The buried basement of the Yucatan platform (400,000 squared km) on the other hand, remains as one of the most relevant problems of tectonostratigraphic correlations across the Americas, because basement clasts from the Chicxulub impact ejecta reveal absolute and Nd-model ages that suggest close Gondwanan affinities. Major changes in the comprehension of the Paleozoic orogens in Mexico

  15. Ancient plate kinematics derived from the deformation pattern of continental crust: Paleo- and Neo-Tethys opening coeval with prolonged Gondwana-Laurussia convergence

    Science.gov (United States)

    Kroner, Uwe; Roscher, Marco; Romer, Rolf L.

    2016-06-01

    The formation and destruction of supercontinents requires prolonged convergent tectonics between particular plates, followed by intra-continental extension during subsequent breakup stages. A specific feature of the Late Paleozoic supercontinent Pangea is the prolonged and diachronous formation of the collisional belts of the Rheic suture zone coeval with recurrent continental breakup and subsequent formation of the mid-ocean ridge systems of the Paleo- and Neo-Tethys oceans at the Devonian and Permian margins of the Gondwana plate, respectively. To decide whether these processes are causally related or not, it is necessary to accurately reconstruct the plate motion of Gondwana relative to Laurussia. Here we propose that the strain pattern preserved in the continental crust can be used for the reconstruction of ancient plate kinematics. We present Euler pole locations for the three fundamental stages of the Late Paleozoic assembly of Pangea and closure of the Rheic Ocean: (I) Early Devonian (ca. 400 Ma) collisional tectonics affected Gondwana at the Armorican Spur north of western Africa and at the promontory of the South China block/Australia of eastern Gondwana, resulting in the Variscan and the Qinling orogenies, respectively. The Euler pole of the rotational axis between Gondwana and Laurussia is positioned east of Gondwana close to Australia. (II) Continued subduction of the western Rheic Ocean initiates the clockwise rotation of Gondwana that is responsible for the separation of the South China block from Gondwana and the opening of Paleo-Tethys during the Late Devonian. The position of the rotational axis north of Africa reveals a shift of the Euler pole to the west. (III) The terminal closure of the Rheic Ocean resulted in the final tectonics of the Alleghanides, the Mauritanides and the Ouachita-Sonora-Marathon belt, occurred after the cessation of the Variscan orogeny in Central Europe, and is coeval with the formation of the Central European Extensional

  16. The Mesozoic Continental Magmatism in Brazil: its Role in the Western Gondwana Evolution from Integrated Paleomagnetic and Geochemical Data

    Science.gov (United States)

    Ernesto, M.; Marques, L. S.

    2011-12-01

    Most of the Paleozoic era in the South American platform represents a period of tectonic quiescence during which large sedimentary basins evolved. Subsequently an intense magmatic activity took place preceding the disclosure of the Gondwana from Pangea, and later the disruption of the western Gondwana blocks (South America and Africa separation). In Brazil Early Jurassic (~220-180 Ma) tholeiitic basalts erupted mostly in the northern area (Amazonas and Parnaíba basins), whereas the Early Cretaceous (~140-120 Ma) is best represented by the huge magmatism of the Serra Geral Formation (Paraná basin, southeastern Brazil). An intense associated intrusive activity in the form of dykes and sills of both ages is widespread all over the country but tends to concentrate towards the continental margins. The integration of paleomagnetic and geochemical data on the Brazilian Mesozoic magmatism put some constraints on the timing, duration and the mantle sources involved in the generation of the magma products related to the different magmatic events.

  17. Evidence of Gondwana early rifting process recorded by Resende-Ilha Grande Dike Swarm, southern Rio de Janeiro, Brazil

    Science.gov (United States)

    Guedes, Eliane; Heilbron, Monica; de Morisson Valeriano, Claudio; de Almeida, Julio César Horta; Szatmari, Peter

    2016-04-01

    Continental flood basalts and dike swarm have been related to continental breakup process through geological time. The Resende - Ilha Grande Dike swarm (RIGDS) located in the southeast Brazil, is related the Gondwana breakup and composed of dikes/sills intruded in Precambrian gneiss. The dikes have three distinguish orientations: NNW more inland; NS-NNE in the central segment and NE orientation in the coast line, consistent with Precambrian structural lineaments. The swarm comprises high-TiO2 tholeiitic basalts divided into three suites based on REE and Sr and Nd isotope data. The Resende and Volta Redonda suites present higher initial 87Sr/86Sr ratios between 0.7077 and 0.7065, while Angra dos Reis suite presents values of 0.7066 to 0.7057. Geochemical and isotopic data support the sub-continental lithospheric mantle (SCLM) as the main source for the high-TiO2 basalts. The suites heterogeneities are explained by different compositions of SCLM in accreted Precambrian terranes and/or different degree of partial melting and fractional. 40Ar/39Ar data indicate age interval between ca. 156 to 144 Ma for the swarm, older than the average for Gondwana breakup (ca. 130-120 Ma). The age interval places the RIGDS between the Karoo magmatism (181-178 Ma) and the Paraná-Etendeka magmatism (133-134 Ma) and indicates that extensional process affected the supercontinent prior the break-up.

  18. Influence of Late Paleozoic Gondwana glaciations on the depositional evolution of the northern Pangean shelf, North Greenland, Svalbard and the Barents Sea

    DEFF Research Database (Denmark)

    Stemmerik, Lars

    2008-01-01

    Outcrop and subsurface data from the central northern margin of the Pangean shelf in North Greenland, Svalbard, and the Norwegian Barents Sea record the depositional response of a Northern Hemisphere subtropical shelf to Late Carboniferous-Early Permian (Bashkirian-Sakmarian) Gondwana glaciations...

  19. Modelos de cinemática de placas para Antártida durante la ruptura de Gondwana: una revisión Plate kinematic models for Antactica during Gondwana break-up: A review

    OpenAIRE

    M.E. Ghidella; Lawver, L.A.; Marenssi, S.; L.M. Gahagan

    2007-01-01

    La historia de apertura del mar de Weddell y del Oc éano Atlántico Sur es crítica para comprender la ruptura de Gondwana y la evolución geológica de Antártida desde el Jurásico temprano. La dispersión de los fragmentos gondwánicos es importante para entender la circulación oceánica del pasado, descifrar la historia de las cuencas sedimentarias ubicadas al Este de la Península Antártica y establecer posibles rutas de dispersión de flora y fauna entre los continentes australes. Desafortunadamen...

  20. South Pacific newsletter : 9

    OpenAIRE

    Kagoshima University Research Center for the South Pacific; カゴシマ ダイガク ミナミ タイヘイヨウ カイイキ ケンキュウ センター; 鹿児島大学南太平洋海域研究センター

    1998-01-01

    The Future of the Research Center for the South Pacific / INOUE Akio (Director, Kagoshima University Research Center for the South Pacific) Unicellular Organisms with Calcareous Shells in the Subtropical and Tropical NW-Pacific / HOHENEGGER Johann (Visiting Professor, Kagoshima University Research Center for the South Pacific) [Symposium] Foraminifera as Indicators of Marine Environments in the Present and Past Why Does Foraminifera Act as Useful Proxies for Modern and Ancient ...

  1. Pacific Executive Leaders Program

    OpenAIRE

    Naval Postgraduate School (U.S.); Center for Homeland Defense and Security

    2013-01-01

    Homeland security in Hawaii and the U.S. Pacific Territories is an evolving and increasingly important issue for our nation. The Naval Postgraduate School Center for Homeland Defense and Security (CHDS), in partnership with other entities in the Pacific region, has developed the Pacific Executive Leaders Course (Pacific ELP), a graduate level education curriculum, to address specific challenges facing officials in these unique areas. This course is intended for mid- and senior-lev...

  2. Social capital and health: evidence that ancestral trust promotes health among children of immigrants.

    Science.gov (United States)

    Ljunge, Martin

    2014-12-01

    This paper presents evidence that generalized trust promotes health. Children of immigrants in a broad set of European countries with ancestry from across the world are studied. Individuals are examined within country of residence using variation in trust across countries of ancestry. The approach addresses reverse causality and concerns that the trust measure picks up institutional factors in the individual's contextual setting. There is a significant positive estimate of ancestral trust in explaining self-assessed health. The finding is robust to accounting for individual, parental, and extensive ancestral country characteristics. Individuals with higher ancestral trust are also less likely to be hampered by health problems in their daily life, providing evidence of trust influencing real life outcomes. Individuals with high trust feel and act healthier, enabling a more productive life. PMID:25464341

  3. From Gondwana to Europe: the journey of Elba Island (Italy) as recorded by U-Pb detrital zircon ages of Paleozoic metasedimentary rocks

    Science.gov (United States)

    Jacobs, Joachim; Sirevaag, Hallgeir; Ksienzyk, Anna K.; Rocchi, Sergio; Paoli, Gabriele

    2016-04-01

    The configuration of the northern Gondwana margin throughout the Paleozoic is difficult to reconstruct owing to the complex geodynamic setting of the Mediterranean region in Mesozoic to Cenozoic times. Detrital zircons in early Paleozoic to early Mesozoic metasedimentary rocks on Elba and mainland Tuscany record the Gondwana provenance of Adria and its rifting from the northern Gondwana margin. A large new LA-ICP-MS and SIMS U-Pb zircon data set allows us to trace this history. Three main stratigraphic units have been investigated on Elba Island. The oldest Porto Azzurro Unit was deposited in the early Cambrian and has zircon age distributions indicating a typical northern African provenance, most likely sourced from the Saharan Metacraton. The Ortano Unit has a simple, mostly unimodal Ordovician age distribution that is entirely dominated by metavolcanic rocks and their erosional products; a sample of the metavolcanic Ortano Porphyroids provided a SIMS U-Pb zircon age of 460 ± 3 Ma. This phase of intense volcanism is related to the subduction of the Rheic Ocean beneath Gondwana, terminating with initial rifting and subsequent opening of the Paleotethys. This also marks the onset of the separation of a range of European terranes, including Adria and future Elba Island, from Gondwana. The Permo-Triassic Monticiano-Roccastrada Unit is the first to show a European provenance with the appearance of large amounts of Variscan and late to post-Variscan detritus. The presence of Variscan detrital zircons in the Permo-Triassic sediments is unexpected, since a Variscan age signature is so far not well recorded in the Adria Plate. This dataset is the most comprehensive detrital zircon data set so far available for the Adria Plate and documents Adria's close affinity to Africa in the Lower Paleozoic, as well as its initial rifting within an active continental margin setting during the Ordovician and its final separation and independent evolution since late Palaeozoic times.

  4. Reconstructed Ancestral Enzymes Impose a Fitness Cost upon Modern Bacteria Despite Exhibiting Favourable Biochemical Properties.

    Science.gov (United States)

    Hobbs, Joanne K; Prentice, Erica J; Groussin, Mathieu; Arcus, Vickery L

    2015-10-01

    Ancestral sequence reconstruction has been widely used to study historical enzyme evolution, both from biochemical and cellular perspectives. Two properties of reconstructed ancestral proteins/enzymes are commonly reported--high thermostability and high catalytic activity--compared with their contemporaries. Increased protein stability is associated with lower aggregation rates, higher soluble protein abundance and a greater capacity to evolve, and therefore, these proteins could be considered "superior" to their contemporary counterparts. In this study, we investigate the relationship between the favourable in vitro biochemical properties of reconstructed ancestral enzymes and the organismal fitness they confer in vivo. We have previously reconstructed several ancestors of the enzyme LeuB, which is essential for leucine biosynthesis. Our initial fitness experiments revealed that overexpression of ANC4, a reconstructed LeuB that exhibits high stability and activity, was only able to partially rescue the growth of a ΔleuB strain, and that a strain complemented with this enzyme was outcompeted by strains carrying one of its descendants. When we expanded our study to include five reconstructed LeuBs and one contemporary, we found that neither in vitro protein stability nor the catalytic rate was correlated with fitness. Instead, fitness showed a strong, negative correlation with estimated evolutionary age (based on phylogenetic relationships). Our findings suggest that, for reconstructed ancestral enzymes, superior in vitro properties do not translate into organismal fitness in vivo. The molecular basis of the relationship between fitness and the inferred age of ancestral LeuB enzymes is unknown, but may be related to the reconstruction process. We also hypothesise that the ancestral enzymes may be incompatible with the other, contemporary enzymes of the metabolic network. PMID:26349578

  5. Carbon isotope chemostratigraphy of the Llandovery in northern peri-Gondwana: new data from the Barrandian area, Czech Republic

    Directory of Open Access Journals (Sweden)

    Jiří Frýda

    2014-12-01

    Full Text Available The first complete δ13Corg record of the uppermost Hirnantian to lower Telychian strata of the Barrandian area (northern peri-Gondwana is presented based on 168 new samples. The new data from the study area reveal that the evolution of the Llandoverian organic carbon isotope reservoir was similar to that on other palaeoplates, but it differs from the development of the coeval carbonate carbon isotope reservoir in the absence of two δ13C excursions (i.e. the early Aeronian positive excursion in the upper part of the Demirastrites triangulatus graptolite Biozone and a negative excursion occurring close to the boundary between the Cystograptus vesiculosus and Coronograptus cyphus graptolite biozones.

  6. Title: Geophysical definition of PARANAPANEMA Proterozoic Block and its importance for the Rodinia to Gondwana evolutionary theories

    Science.gov (United States)

    Mantovani, M.; de Brito Neves, B.; Quintas, M.; Shukowsky, W.

    2003-04-01

    (NE), while the lineaments Torres-Posadas and Tietê (NW), better denoted for the second event, are parallel to the Early Cretaceous Ponta Grossa Arch. From geological observations, the Apiaí Belt, a continental Atlantic margin to the East, the Goiás Arch, an active margin to the northwest, and the Socorro-Guaxupé Orogen, an active margin with arch formation to the northeast of Paranapanema, assign great importance to this block for describing the western Gondwana evolution and assembly. Therefore, Paranapanema should be taken into account among the lithosphere segments derived from Rodinia, and later from Western Gondwana, after undergoing a series of orogenic events. Samples from deep boreholes prove the existence of a Paleoproterozoic basement buried by volcano-sedimentary Paleo to Mesoproerozoic layers as also been observed for the Amazonian and the S. Francisco craton. Moreover, geological and geochronology studies of the Ribeira Belt infrastructure identify an increase of Mesoproterozoic rocks towards the border of Paranapanema. Shear faults of Late-Brasiliano age developed significant transitional depressions forming the precursor rifts filled with Silurian to Triassic sediments. As for Paranapanema, analogous blocks may exist under the Parnaiba basin and other structures that were activated during the Brasiliano Cycle to form Gondwana. In this light, we consider that a revision is required in order to amend the present theories on the evolutionary process from Rodinia to Gondwana.

  7. New Rb-Sr mineral ages temporally link plume events with accretion at the margin of Gondwana

    Science.gov (United States)

    Flowerdew, M.J.; Daly, J.S.; Riley, T.R.

    2007-01-01

    Five of six Rb-Sr muscovite mineral isochron ages from the Scotia Metamorphic Complex of the South Orkney Islands, West Antarctica, average 190 ± 4 Ma. The muscovite ages are interpreted to date foliation-formation and thus also accretion and subduction at the Gondwana margin. Coincident picrite and ferropicrite magmatism, indicative of melts from deep-seated depleted mantle, permits a causative link between accretion and the arrival of the Karoo – Ferrar – Chon Aike mantle plume in the Early Jurassic. Three biotite Rb-Sr mineral isochron ages are consistently younger and average 176 ± 5 Ma. The biotite ages may record post-metamorphic cooling or more likely retrogressive metamorphic effects during uplift.

  8. Mesozoic break-up of SW Gondwana: implications for regional hydrocarbon potential of the southern South Atlantic

    Energy Technology Data Exchange (ETDEWEB)

    Macdonald, D. [University of Cambridge (United Kingdom). CASP; University of Abderdeen (United Kingdom). Kings College; Gomez-Perez, I. [University of Cambridge (United Kingdom). CASP; Franzese, J. [Centro de Investigaciones Geologicas, La Plata (AR)] (and others)

    2003-04-01

    This work provides new palinspastic palaeofacies reconstructions of SW Gondwana incorporating rotation of a Falkland/Malvinas microplate. We discuss the implications of this for the tectonic evolution of the southern South Atlantic and hence for the regional hydrocarbon potential. Existing Gondwana reconstructions display good fits of major continents but poorly constrained fits of microcontinents. In most continental reconstructions, the Falkland/Malvinas Plateau was assumed to be a rigid fragment of pre-Permian South American crust. However, it has been suggested, on the basis of palaeomagnetic data, that the Falkland/Malvinas Islands were rotated by {approx} 180{sup o} after 190 Ma. This rotation hypothesis has been successfully tested on the basis of Devonian stratigraphy and palaeontology, Permian stratigraphy and sedimentology and Late Palaeozoic and Early Mesozoic structure, making it unlikely that the plateau behaved as a rigid structure during breakup. We have explored the consequences of accepting this hypothesis for the tectonic evolution of SW Gondwana by compiling new palaeogeographic maps for the Permian-Cretaceous of the southern Atlantic area. To achieve a realistic close fit, we have devised a pre-rift proxy for the ocean-continent boundary for the South Atlantic. In order to produce the best fit, it is necessary to subdivide South America into four plates. The consequences of this are far-reaching. Our work suggests that although sedimentary basins were initiated at different times, three major tectonic phases can be recognised; in regional terms these can be thought of as pre-, syn- and post-rift. During the pre-rift time (until the Late Triassic), the area was dominated by compressional tectonism and formed part of the Gondwana foreland. The Falkland/Malvinas Islands lay cast of Africa, the Falkland/Malvinas Plateau was {approx} 33% shorter and Patagonia was displaced east with respect to the rest of South America, in part along the line of the

  9. Pacific Flyway management plan for Pacific brant

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Pacific Flyway brant (Branta bernicla) population (PFBP) is made up of brant breeding in Alaska, the western Canadian arctic, and the eastern Russian arctic,...

  10. A skull might lie: modelling ancestral ranges and diet from genes and shape of tree squirrels

    Czech Academy of Sciences Publication Activity Database

    Pečnerová, Patrícia; Moravec, Jiří C.; Martínková, Natália

    2015-01-01

    Roč. 64, č. 6 (2015), s. 1074-1088. ISSN 1063-5157 EU Projects: European Commission(XE) CZ.1.07/2.4.00/17.0138 Institutional support: RVO:68081766 Keywords : Sciurini * multilocus phylogeny * geometric morphometry * speciation * ancestral range reconstruction * diet modelling Subject RIV: EG - Zoology Impact factor: 14.387, year: 2014

  11. Investigating the potential of ancestral state reconstruction algorithms in historical linguistics

    OpenAIRE

    Jäger, Gerhard; List, Johann-Mattis

    2016-01-01

    Current efforts in computational historical linguistics are predominantly concerned with phylogenetic inference. However, methods for ancestral state reconstruction have been only sporadically applied. This is surprising since reconstruction is considered essential both in evolutionary biology and in classical historical linguistics. In contradistinction to phylogenetic algorithms, automatic reconstruction methods presuppose phylogenetic information in order to explain what has evolved whe...

  12. Inheritance of the 8.1 ancestral haplotype in recurrent pregnancy loss

    OpenAIRE

    Kolte, Astrid M.; Nielsen, Henriette S.; Steffensen, Rudi; Crespi, Bernard; Christiansen, Ole B

    2015-01-01

    A segment of DNA called the 8.1 ancestral haplotype is hypothesized to cause fetal loss due to a ‘selfish gene’ effect. The hypothesis was not supported, although the haplotype tended to be inherited more often than expected among girls (p=0.11) in a study of 110 mother-child pairs. Further studies are warranted.

  13. Frequency of carriers of 8.1 ancestral haplotype and its fragments in two Caucasian populations.

    Science.gov (United States)

    Kiszel, Petra; Kovács, Margit; Szalai, Csaba; Yang, Yan; Pozsonyi, Eva; Blaskó, Bernadett; Laki, Judit; Prohászka, Zoltán; Fazakas, Adám; Pánczél, Pál; Hosszúfalusi, Nóra; Rajczy, Katalin; Wu, Yee-Ling; Chung, Erwin K; Zhou, Bi; Blanchong, Carol A; Vatay, Agnes; Yu, C Yung; Füst, G

    2007-01-01

    Within the human MHC region larger stretches of conserved DNA, called conserved ancestral haplotypes exist. However, many MHC haplotypes contain only fragments of an ancestral haplotype. Little is known, however, on relative distribution of the ancestral haplotypes to their fragments. Therefore we determined the frequency of carriers of the whole ancestral haplotype 8.1 (AH8.1) and its fragments in 127 healthy Hungarian people, 101 healthy Ohioian females, and in nine Hungarian families. The HLA-DQ2, HLA-DR3(17), RAGE -429C allele, the mono-S-C4B genotype, the HSP70-2 1267G allele and the TNF -308A (TNF2) allele were used as markers of the AH8.1. Frequency of carriers of the whole AH8.1 and its fragments was similar in the both populations. 18% of the subjects carried the whole AH8.1 in at least one chromosome, while 17-20%, 36-39%, and 24-29%, respectively carried two or three constituents of the haplotype, only one constituent or none of them. Similar results were obtained in the family study. In addition, marked differences were found in the relationship of the constituents' alleles to the whole AH8.1. In both populations, 29%, 50-59%, 52-56% and 76-96%, respectively of the carriers of HSP70-2 1267G, RAGE-429C, TNF2, and mono-S carriers carried the whole 8.1 haplotype. These findings may have important implications for studies of the disease associations with different MHC ancestral haplotypes. PMID:17558713

  14. South Pacific newsletter : 11

    OpenAIRE

    Kagoshima University Research Center for the Pacific Islands; カゴシマ ダイガク タトウケン ケンキュウ センター; 鹿児島大学多島圏研究センター

    2000-01-01

    The 1999 Yap Research : 13 October to 9 November 2000 / AOYAMA Toru (Kagoshima University Research Center for the Pacific Islands) The "Local" As a Empirical Problem in Pacific Islands Anthropology / BESNIER Niko (Visiting Professor, Kagoshima University Research Venter for the Pacific Islands) [Colloquium] "Social Homeostasis of Small Islands in an Island-Zone" Autonomy and Independence of Each Islands State of the World / NAGASHIMA Shunsuke (Faculty of Human Life & Environment, ...

  15. The role of the Variscan eastern Gondwana-Laurussia/Laurasia boundary in the evolution of the central Mediterranean area

    Science.gov (United States)

    Padovano, M.; Elter, F. M.; Pandeli, E.

    2010-12-01

    The geodynamic evolution of the central Mediterranean area is linked to the interaction between Gondwana and Laurussia/Laurasia plates. The interaction between these plates led to the development of Variscan, Alpine and Apennine Orogenic belts. In spite of the different ages of the orogenic systems, it is possible to hypothesize that their geodynamic evolution was linked to the complex interactions between the eastern boundary of Gondwana and the western boundary of Laurussia/Laurasia. This irregular boundary could have played the role of a pre-existing tectonic barrier which started to develop during the Upper Carboniferous. The kinematic along the boundary was related to a transpressive regime which evolved through a shear zones system (“snake” strike-slip and oblique shear zones). The transpressive environment led to the formation of restraining/releasing bends along the boundary between the two plates. The exhumation of middle/deep crustal rocks by telescoping processes, coeval with the transcurrent movement, occurred in the core of this narrow shear zone. The first occurrences of restraining/releasing bends are related to the Early Visean-Bashkirian (Variscan orogeny). The Variscan eastern boundary between the two colliding plates is characterized by a long-narrow band of HT rocks (East Variscan Shear Zone, EVSZ). From South to North they are: Calabria-Peloritani Terrane (Calabria and Sicily), deep basement of northern Apennines, Sardinia, Corsica, Maures-Tanneron Massif and Alpine Massifs. The same boundary was later reworked by the opening of the Alpine Tethys, dated at the Middle-Upper Jurassic. The opening of the Alpine Tethys led to the separation of the Variscan crust which will represent the future Alpine Massifs (External and Internal Massifs). The closure of the Alpine Tethys and the beginning of the Alpine Orogeny (Late Cretaceous to Eocene) re-assembled the system. The roto-translation of the Sardinia-Corsica and Calabrian-Peloritan blocks

  16. Permian-Carboniferous arc magmatism in southern Mexico: U-Pb dating, trace element and Hf isotopic evidence on zircons of earliest subduction beneath the western margin of Gondwana

    Science.gov (United States)

    Ortega-Obregón, C.; Solari, L.; Gómez-Tuena, A.; Elías-Herrera, M.; Ortega-Gutiérrez, F.; Macías-Romo, C.

    2014-07-01

    Undeformed felsic to mafic igneous rocks, dated by U-Pb zircon geochronology between 311 and 255 Ma, intrude different units of the Oaxacan and Acatlán metamorphic complexes in southwestern Mexico. Rare earth element concentrations on zircons from most of these magmatic rocks have a typical igneous character, with fractionated heavy rare earths and negative Eu anomalies. Only inherited Precambrian zircons are depleted in heavy rare earth elements, which suggest contemporaneous crystallization in equilibrium with metamorphic garnet during granulite facies metamorphism. Hf isotopic signatures are, however, different among these magmatic units. For example, zircons from two of these magmatic units (Cuanana pluton and Honduras batholith) have positive ɛHf values (+3.8-+8.5) and depleted mantle model ages (using a mean crustal value of 176Lu/177Hf = 0.015) ( T DMC) ranging between 756 and 1,057 Ma, whereas zircons from the rest of the magmatic units (Etla granite, Zaniza batholith, Carbonera stock and Sosola rhyolite) have negative ɛHf values (-1 to -14) and model ages between 1,330 and 2,160 Ma. This suggests either recycling of different crustal sources or, more likely, different extents of crustal contamination of arc-related mafic magmas in which the Oaxacan Complex acted as the main contaminant. These plutons thus represent the magmatic expression of the initial stages of eastward subduction of the Pacific plate beneath the western margin of Gondwana, and confirm the existence of a Late Carboniferous-Permian magmatic arc that extended from southern North America to Central America.

  17. Shallow lacustrine system of the Permian Pedra de Fogo Formation, Western Gondwana, Parnaíba Basin, Brazil

    Science.gov (United States)

    Araújo, Raphael Neto; Nogueira, Afonso César Rodrigues; Bandeira, José; Angélica, Rômulo Simões

    2016-04-01

    The Permian Period of the Parnaíba Basin, northern Brazil, represented here by deposits from the Pedra de Fogo Formation, records important events that occurred in Western Gondwana near its boundary with the Mesozoic Era. The analysis of outcrop based facies from the Permian Pedra de Fogo Formation, which is 100 m thick, carried out along the eastern and western borders of the Parnaiba Basin, allowed the identification of eleven sedimentary facies, which were grouped into three distinct facies associations (FA), representative of a shallow lacustrine system associated with mudflats and ephemeral rivers. Bioturbation, desiccation cracks, silcretes and various siliceous concretions characterize the Pedra de Fogo deposits. The FA1 mudflat deposits occur predominantly at the base of the Pedra de Fogo Formation and consist of laminated claystone/mudstone, mudcrack-bearing sandstones/mudstones and sandstones exhibiting cross-lamination, massive and megaripple bedding. Popcorn-like silicified nodules and casts indicate evaporite deposits. Other common features are silica concretions, silicified tepees and silcretes. FA2 represents nearshore deposits and consists of fine-grained sandstones with evenly parallel lamination, climbing ripple cross-lamination, massive and megaripple bedding and mudstone/siltstone showing evenly parallel lamination. FA3 refers to wadi/inundite deposits, generally organized as fining-upward cycles of metric size, composed of conglomerates and medium-grained pebbly sandstones showing massive bedding and cross-stratification, as well as claystone/siltstone showing evenly parallel to undulate lamination. Scour-and-fill features are isolated in predominantly tabular deposits composed of mudstones interbedded with fine to medium-grained sandstones showing planar to slightly undulate lamination. Silicified plant remains previously classified as belonging to the Psaronius genus found in the uppermost levels of the Pedra de Fogo Formation, near the

  18. Evidence of pre-Gondwana tectono-thermal event from the Bhilwara Supracrustal units of Rajasthan, north-west India

    Science.gov (United States)

    Saha, Lopamudra; Sarkar, Saheli; Rakshit, Nibedita; Nasipuri, Pritam

    2014-05-01

    In the Indian subcontinent, two pre- Gondwana (pre- Pan African) orogenies are mostly recorded and well-studied from the Eastern Ghat Mobile Belt: (i) >1.1 Ga and (ii) ~950 Ma. During the ~950Ma orogeny, the pre-existing granulites have been re-melted under granulite facies conditions at ~8 kbar, 800-850ºC in the sillimanite stability field with formation of garnet-orthopyroxene in the restites. In this study we report garnet-sillimanite bearing and garnet-staurolite-kyanite bearing supracrustal rocks from the Bhilwara Supergroup in Rajasthan, N-W India. Peak assemblage in the garnet-sillimanite bearing metapelite is: garnet-sillimanite-biotite-plagioclase-quartz. Garnet porphyroblasts contain sillimanite-biotite bearing inclusion trails. Matrix foliations consist of biotite, sillimanite, quartz. Peak pressure-temperature calculated for garnet formation are ~7-8 kbar, 800ºC. Garnet is replaced along the margins by biotite during retrogression. Within garnet-staurolite-kyanite schist, peak assemblage is formed of garnet-staurolite-biotite-kyanite quartz, where garnet and staurolite occur as porphyroclasts and the matrix foliations are formed of kyanite-biotite-quartz. Mineral assemblages and compositions in the rock indicate peak pressure-temperature >8 kbar, 600ºC. The ages of the metamorphic events at sillimanite and kyanite facies are not well-constrained. However since the Bhilwara supracrustal units occur close to the Grenvillian orogenic belt at Sandmata Complex, the timing of the peak metamorphism can be constrained at ~1.0 Ga. Garnet-sillimanite-bearing assemblages noted in the Bhilwara Supracrustal Belt, has also been noted from the Grenvillian belts in the Eastern Ghat Mobile Belt. So the question that needs to be addressed is whether the Grenvillian orogenic belt recorded form the Sandmata Complex in Rajasthan and that of the Eastern Ghat Belt had been a continuous orogenic belt? Such possibilities can be addressed by establishing detailed structural

  19. Evidence of lacustrine sedimentation in the Upper Permian Bijori Formation, Satpura Gondwana basin: Palaeogeographic and tectonic implications

    Indian Academy of Sciences (India)

    Tapan Chakraborty; Soumen Sarkar

    2005-06-01

    The Upper Permian Bijori Formation of the Satpura Gondwana basin comprising fine- to coarsegrained sandstone, carbonaceous shale/mudstone and thin coal bands was previously interpreted as the deposits of meandering rivers. The present study documents abundance of wave ripples, hummocky and swaley cross-stratification and combined flow bedforms in the Bijori Formation, suggesting that a significant part of the formation was deposited in a wave-agitated environment. Evidence of near-emergent depositional conditions provided by repeated occurrence of rootlet beds and hydromorphic paleosols, local flooding surfaces denoting rapid fluctuation of water level, occurrences of temnospondyl vertebrate fossils, and absence of tidal signatures and marine fossils suggest a lacustrine rather than marine depositional regime. Five facies associations recognised within the Bijori Formation are inferred to represent fluvial channels and associated floodplains (FA1), lake shorelines (FA2), subaqueous distributary channels and associated levees (FA3), wave- and storm-affected delta front (FA4), and open lacustrine/lower shoreface (FA5) deposits. The planoconcave fluvial channel-fill sandbodies with unidirectional cross-beds are clearly distinguishable from the delta front bars that show a convexo-plan or bi-convex sandbody geometry and dominance of wave and combined flow bedforms. Some of the distributary channels record interaction of fluvial and wave-dominated basinal processes. Major distributary sandbodies show a north to northwest flow direction while wave-affected delta front sandbodies show very complex flow patterns reflecting interaction between fluvial discharge and wave processes. Wave ripple crest trends show that the lake shoreline had an overall east–northeast to west–southwest orientation. The lack of documented contemporaneous lacustrine or marine sediments in the Satpura Gondwana basin posed a major problem of basin-scale palaeogeographic reconstruction. The

  20. Late Paleozoic accretionary complexes on the Gondwana margin of southern Chile: Evidence from the Chonos Archipelago

    Science.gov (United States)

    Davidson, John; Mpodozis, Constantino; Godoy, Estanislao; Hervé, Francisco; Pankhurst, Robert; Brook, Maureen

    The late Paleozoic "basement" rocks that crop out along the Pacific side of the Chonos Archipelago (44°-46°S) can be divided into two north-south trending belts: (1) an eastern belt formed of submarine fan-turbidites and subordinate pelagic cherts, each containing well-preserved primary sedimentary structures, and (2) a western belt, mainly formed by strongly foliated mica schists and greenschists. Trace element contents in the cherts and greenschists indicate rocks of oceanic affinity. The structures present within the eastern rock suite are principally subiso-clinal folds (with tectonic imbrication) and locally developed zones of broken formation. The transition from these rocks into the foliated schists appears to be related to a progressive increase in metamorphism and strain associated with the development of westward verging recumbent folds and a flat-lying crenulation cleavage. It is inferred that these structures developed during the construction of a Late Carboniferous-Early Permian accretionary prism (about 260 Ma Rb-Sr ages), although sedimentation may have taken place throughout the upper Paleozoic. Rb-Sr whole-rock isochrons giving Late Jurassic to Early Cretaceous ages for some localities may indicate much later development of S2 structures. Alternatively, they may represent isotopic resetting by hydrothermal effects during the emplacement of transgressive Early Cretaceous granites, one of which gives a new Rb-Sr isochron age of 125±2Ma. This overall scenario seems to be consistent with that reported in the slightly older coastal metamorphic basement north of 34°S and equivalent or younger complexes farther south in the Madre de Dios Archipelago.

  1. The middle and upper Lochkovian (Lower Devonian) conodont successions in key peri-Gondwana localities (Spanish Central Pyrenees and Prague Synform) and their relevance for global correlations

    Czech Academy of Sciences Publication Activity Database

    Valenzuela-Ríos, J. I.; Slavík, Ladislav; Liao, J.-Ch.; Calvo, H.; Hušková, Aneta; Chadimová, Leona

    2015-01-01

    Roč. 27, č. 6 (2015), s. 409-415. ISSN 0954-4879 R&D Projects: GA ČR GA14-18183S Grant ostatní: Rada Programu interní podpory projektů mezinárodní spolupráce AV ČR(CZ) M100131201 Institutional support: RVO:67985831 Keywords : Lochkovian * conodonts * peri-Gondwana localities Subject RIV: DB - Geology ; Mineralogy Impact factor: 2.639, year: 2014

  2. Crustal structure of Gondwana-and Yangtze-typed blocks: An example by wide-angle seismic profile from Menglian to Malong in western Yunnan

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zhongjie; BAI Zhiming,; WANG Chunyong; TENG Jiwen; Lü Qingtian; LI Jiliang; SUN Shanxue; WANG Xinzheng

    2005-01-01

    The wide-angle seismic profile between Menglian and Malong crosses the Baoshan block (Gondwana-typed), and Simao and southwestern Yangtze blocks (Yangtze-typed). By interpreting the wide-angle seismic data, we obtained the seismic crust/upper mantle structure of P-wave velocities together with the seismic reflections of these three blocks, Changning- Menglian and Mojiang suture zones among the mentioned three blocks. Our interpreting results demonstrate that the P-wave crustal velocity of Simao block is slower than that of Baoshan and southwestern Yangtze block and the crustal thickness gradually thickens from the Baoshan block, Simao to southwestern Yangtze block. Crustal reflection patterns of these three blocks have distinct differences too. For the Gondwana-typed blocks, seismic reflections in the upper crust are well developed while in middle-lower crust they are very weak. The crustal reflections in the Yangtze block are very well developed. The crustal reflection patterns in Simao and southwestern Yangtze blocks are distinguishable. The average thickness of the crust in the studied area is about 40 km. And we make some discussions on the crustal thickening model of the three blocks in western Yunnan and tectonic setting of seismic developing and interaction of Gondwana and Yangtze blocks.

  3. Tectonic setting of the North Gondwana margin during the Early Ordovician: A comparison of the Ollo de Sapo and Famatina magmatic events

    Science.gov (United States)

    Del Greco, Kassandra; Johnston, Stephen T.; Shaw, Jessica

    2016-06-01

    This paper presents a comparison of compiled geochronological and geochemical data from the Ollo de Sapo and Famatina magmatic events. The Ollo de Sapo magmatic sequence is located in northwest Iberia and was emplaced during the early-Ordovician from 495 to 474 Ma. The Famatina Complex is a magmatic sequence located in Northern Argentina that was emplaced during the early- to mid-Ordovician from 483 to 463 Ma. These magmatic events are currently interpreted to have been emplaced in different tectonic settings despite both having occurred along the North Gondwana margin. Geochronological data indicates that these magmatic events occurred contemporaneously over at least 9 m.y. and therefore can provide a snapshot of the northern Gondwana margin during the mid-Ordovician. Major element data indicates that both magmatic suites are calc-alkaline to alkali-calcic and trace element and REE data show magmatic signatures that are indistinguishable. This study highlights the similarity between the Ollo de Sapo and the Famatina magmatic suites and discusses alternative models for their emplacement based on paleomagnetic and paleobiogeographical data. These data indicate that the Ollo de Sapo was likely emplaced in a subduction zone setting, while the Famatina magmatic suite may be of parautochthonous origin to Gondwana, implying that the Pampeanan margin may not have been active during the early- to mid-Ordovician.

  4. PACIFIC NORTHWEST CYBER SUMMIT

    Energy Technology Data Exchange (ETDEWEB)

    Lesperance, Ann M.; Matlock, Gordon W.; Becker-Dippmann, Angela S.; Smith, Karen S.

    2013-08-07

    On March 26, 2013, the Snohomish County Public Utility District (PUD) and the U.S. Department of Energy’s (DOE’s) Pacific Northwest National Laboratory (PNNL) jointly hosted the Pacific Northwest Cyber Summit with the DOE’s Office of Electricity Delivery and Energy Reliability, the White House, Washington State congressional delegation, Washington State National Guard, and regional energy companies.

  5. Asia Pacific energy derivatives

    International Nuclear Information System (INIS)

    Asia Pacific Energy Derivatives, from FT Energy, is the first report of its kind to examine the growth of energy derivatives within Asia Pacific and their increasing importance within this region. It provides a comprehensive overview of the subject, including analysis of: deregulation as a market driver; the impact of privatisation; the future for energy risk management tools; the unique characteristics of the Asia Pacific energy market; the role of futures exchanges in Asia; existing indexes and their performance; the differences between the Asia Pacific markets and their more mature counterparts in London and New York; non-oil derivatives, project finance and cross commodity arbitrage; the thriving Pacific Rim Over the Counter (OTC) markets. (author)

  6. Petrology and geochemistry of the Salma dike, Raniganj coalfield (Lower Gondwana), eastern India: linkage with Rajmahal or Deccan volcanic activity?

    Energy Technology Data Exchange (ETDEWEB)

    Paul, D.K. [Presidency College, Calcutta (India). Dept. of Geology

    2005-11-01

    The Gondwana (Early Permian to Early Cretaceous) basins of eastern India have been intruded by ultramafic-ultrapotassic (minette, lamproite and orangeite) and mafic (dolerite) rocks. The Salma dike is the most prominent among mafic intrusives in the Raniganj basin. This dike is tholeiitic in composition; MgO varies from 5.4 to 6.3% and the mg number from 54 to 59. In general, the major and trace element abundances are uniform both along and across the strike. There is geochemical and mineralogical evidence for fractional crystallization. The chondrite normalized REE pattern of the Salma dike (La/Yb{sub n} = 3.5) is similar to that of Deccan dikes of the Son-Narmada rift zone, western India. Sr-87/Sr-86 varies from 0.70552 to 0.70671 suggesting assimilation of crustal material. Some trace element abundances (e.g. Ti, Zr, Y) of the Salma dike are comparable to Group I Rajmahal basalts. The Ar-40/Ar-39 whole rock age of 65 Ma for the Salma dike is less than the ca. 114 Ma age for the Rajmahal basalt, but is similar to the generally accepted age for Deccan volcanic rocks. Despite geographical proximity with the Rajmahal basalt, the Salma dike is believed to be related to late phase of Deccan volcanic activity.

  7. The Guarguaraz Complex and the Neoproterozoic-Cambrian evolution of southwestern Gondwana: Geochemical signatures and geochronological constraints

    Science.gov (United States)

    López de Azarevich, Vanina L.; Escayola, Mónica; Azarevich, Miguel B.; Pimentel, Márcio M.; Tassinari, Colombo

    2009-12-01

    The Guarguaraz Complex, in western Argentina, comprises a metasedimentary assemblage, associated with mafic sills and ultramafic bodies intruded by basaltic dikes, which are interpreted as Ordovician dismembered ophiolites. Two kinds of dikes are recognized, a group associated with the metasediments and the other ophiolite-related. Both have N-MORB signatures, with ɛNd between +3.5 and +8.2, indicating a depleted source, and Grenville model ages between 0.99 and 1.62 Ga. A whole-rock Sm-Nd isochron yielded an age of 655 ± 76 Ma for these mafic rocks, which is compatible with cianobacteria and acritarchae recognized in the clastic metasedimentary platform sequences, that indicate a Neoproterozoic (Vendian)-Cambrian age of deposition. The Guarguaraz metasedimentary-ophiolitic complex represents, therefore, a remnant of an oceanic basin developed to the west of the Grenville-aged Cuyania terrane during the Neoproterozoic. The southernmost extension of these metasedimentary sequences in Cordón del Portillo might represent part of this platform and not fragments of the Chilenia terrane. An extensional event related to the fragmentation of Rodinia is represented by the mafic and ultramafic rocks. The Devonian docking of Chilenia emplaced remnants of ocean floor and slices of the Cuyania terrane (Las Yaretas Gneisses) in tectonic contact with the Neoproterozoic metasediments, marking the Devonian western border of Gondwana.

  8. The late Paleozoic palynological diversity in southernmost Paraná (Uruguay), Claromecó and Paganzo basins (Argentina), Western Gondwana

    Science.gov (United States)

    Beri, Ángeles; Gutiérrez, Pedro R.; Balarino, M. Lucía

    2015-12-01

    This study explores the changes in palynoflora diversity of the late Paleozoic in boreholes DI.NA.MI.GE. 254 (26 samples) and DI.NA.MI.GE. 221 (14 samples) of the Paraná Basin in Uruguay and in 18 surface samples of the La Deheza Formation (Paganzo Basin) and 10 samples of borehole UTAL.CMM1.La Estrella.x-1 (Claromecó Basin) in Argentina. Possible relationships among biostratigraphic zones, diversity levels, facies and climatic evolution patterns in Western Gondwana are studied. Diversity curves of boreholes 221 and 254 and the La Deheza Formation outcrop exhibit similar diversity evolution patterns, i.e., an increase in lower strata diversity and a decrease in upper strata diversity. The disappearance events are determined to be more prominent in biozones of the Cisuralian to the Guadalupian age and less prominent in biozones of the early Cisuralian age. The number of genera raises from the glaciomarine facies, through the deltaic and the marine facies, up to the shallow marine or lagoon facies, in which the disappearance rates become more prominent. . The diversity of the lower part of the La Estrella borehole is lesser than that of the other sequences These diversity, disappearance and appearance behaviors may reflect post-glacial climatic amelioration patterns and the beginning of an arid phase.

  9. Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi

    Science.gov (United States)

    Medina, Edgar M; Turner, Jonathan J; Gordân, Raluca; Skotheim, Jan M; Buchler, Nicolas E

    2016-01-01

    Although cell cycle control is an ancient, conserved, and essential process, some core animal and fungal cell cycle regulators share no more sequence identity than non-homologous proteins. Here, we show that evolution along the fungal lineage was punctuated by the early acquisition and entrainment of the SBF transcription factor through horizontal gene transfer. Cell cycle evolution in the fungal ancestor then proceeded through a hybrid network containing both SBF and its ancestral animal counterpart E2F, which is still maintained in many basal fungi. We hypothesize that a virally-derived SBF may have initially hijacked cell cycle control by activating transcription via the cis-regulatory elements targeted by the ancestral cell cycle regulator E2F, much like extant viral oncogenes. Consistent with this hypothesis, we show that SBF can regulate promoters with E2F binding sites in budding yeast. DOI: http://dx.doi.org/10.7554/eLife.09492.001 PMID:27162172

  10. Detrital zircon provenance of Silurian-Devonian and Triassic sedimentary rocks of the western Yangtze Block: Constraint for the location of South China in Gondwana supercontinent

    Science.gov (United States)

    Chen, Qiong; Sun, Min; Zhao, Guochun

    2016-04-01

    During Paleozoic even to early Mesozoic, South China, along with a series of Asia continental blocks, dispersed from the northern margin of Gondwana, drifting across the Tethys Ocean and accreting to the final assembly of Asia in Triassic, which also accepted sediments sourced from the adjoining segments of east Gondwana and itself successively. However, the exact location of South China within the east Gondwana and other Asia blocks is arguing and confusing. Detrital zircon U-Pb geochronology and Hf isotope data from Paleozoic sedimentary rocks and massive Triassic flysch sequences kept in the western margin of South China (Danba-Longmenshan regions) provide a record of the source from which they were derived, and thus being applied to constraining the distribution of basement block in paleogeographic reconstructions and the tectonic setting of the basin. Two Longmenshan Devonian sediments exhibit dominant Grenvillian ages (0.9-1.1 Ga), with mid-Neoproterozoic (730-850 Ma), Pan-African (500-680 Ma) and Neoarchean (2.4-2.5 Ga) age populations, indicative of a typical Gondwana-derived affinity, which is also recorded by the Danba Silurian sample and other Paleozoic sediments (Devonian-Cambrian) in the resting South China block, including the east Yangtze block and the Cathaysia. However, the similar age patterns are not observed in the Devonian sample of Danba region, which exhibits a different age pattern with only two significant age groups of Pan-African (440-600 Ma) and Neoproterozoic (660-994 Ma) with an apparent lack of older zircon grains (>1.0 Ga). The Triassic sandstone from Songpan-Ganze covering sequences shows a distinguished zircon age distribution with prominant mid-Neoproterozoic (649-843 Ma), mid-Paleoproterozoic (1724-1951 Ma) and subordinated Permian-Triassic (236-298 Ma), Paleozoic (375-530 Ma) ages, mainly derived by melting of old crust with few input of juvenile material. Considering provenance changes along with the temporal and variation in

  11. Diaspora of diaspora: Adyge-Abkhaz returnees in the ancestral homeland

    OpenAIRE

    Erciyes, Cemre

    2008-01-01

    Focusing on the diasporic characteristics shown by ancestral return migrants, this case study looks at the Abkhaz-Adyge (Circassian) returnees from Turkey to the Caucasus and how they become the “diaspora of the diaspora.” The next generations of diasporans continue to dream of return, and, with recent developments in communication technologies and cheaper transportation, many find ways to realize this dream. There are many different forms of return, but some “return-migrate” and settle in an...

  12. COMPONENTES NUTRICIONALES Y ANTIOXIDANTES DE DOS ESPECIES DE GUAJE (Leucaena spp.): UN RECURSO ANCESTRAL SUBUTILIZADO

    OpenAIRE

    Nallely Román-Cortés; María del Rosario García-Mateos; Ana María Castillo-González; Jaime Sahagún-Castellanos; Adelina Jiménez-Arellanes

    2014-01-01

    El guaje ( Leucaena spp.) es una planta de vaina y semillas comestibles, un recurso ancestral subutilizado por los pueblos mesoamericanos. El valor nutricional y nutracéutico del guaje se desconoce pese a su consumo vigente en las poblaciones rurales. El objetivo de este trabajo fue evaluar el contenido de minerales, compo - nentes nutricionales y antioxidantes para contribuir a la revalorización alimentaria del guaje rojo ( L. esculenta Benth.) y verde ( L. leucocephala Lam.). Los contenidos...

  13. Ancestral informative marker selection and population structure visualization using sparse Laplacian eigenfunctions.

    Directory of Open Access Journals (Sweden)

    Jun Zhang

    Full Text Available Identification of a small panel of population structure informative markers can reduce genotyping cost and is useful in various applications, such as ancestry inference in association mapping, forensics and evolutionary theory in population genetics. Traditional methods to ascertain ancestral informative markers usually require the prior knowledge of individual ancestry and have difficulty for admixed populations. Recently Principal Components Analysis (PCA has been employed with success to select SNPs which are highly correlated with top significant principal components (PCs without use of individual ancestral information. The approach is also applicable to admixed populations. Here we propose a novel approach based on our recent result on summarizing population structure by graph laplacian eigenfunctions, which differs from PCA in that it is geometric and robust to outliers. Our approach also takes advantage of the priori sparseness of informative markers in the genome. Through simulation of a ring population and the real global population sample HGDP of 650K SNPs genotyped in 940 unrelated individuals, we validate the proposed algorithm at selecting most informative markers, a small fraction of which can recover the similar underlying population structure efficiently. Employing a standard Support Vector Machine (SVM to predict individuals' continental memberships on HGDP dataset of seven continents, we demonstrate that the selected SNPs by our method are more informative but less redundant than those selected by PCA. Our algorithm is a promising tool in genome-wide association studies and population genetics, facilitating the selection of structure informative markers, efficient detection of population substructure and ancestral inference.

  14. Distinct actions of ancestral vinclozolin and juvenile stress on neural gene expression in the male rat

    Directory of Open Access Journals (Sweden)

    Ross eGillette

    2015-03-01

    Full Text Available Exposure to the endocrine disrupting chemical vinclozolin during gestation of an F0 generation and/or chronic restraint stress during adolescence of the F3 descendants affects behavior, physiology, and gene expression in the brain. Genes related to the networks of growth factors, signaling peptides and receptors, steroid hormone receptors and enzymes, and epigenetic related factors were measured using quantitative polymerase chain reaction via Taqman low density arrays targeting 48 genes in the central amygdaloid nucleus, medial amygdaloid nucleus, medial preoptic area, lateral hypothalamus, and the ventromedial nucleus of the hypothalamus. We found that growth factors are particularly vulnerable to ancestral exposure in the central and medial amygdala; restraint stress during adolescence affected neural growth factors in the medial amygdala. Signaling peptides were affected by both ancestral exposure and stress during adolescence primarily in hypothalamic nuclei. Steroid hormone receptors and enzymes were strongly affected by restraint stress in the medial preoptic area. Epigenetic related genes were affected by stress in the ventromedial hypothalamus and by both ancestral exposure and stress during adolescence independently in the central amygdala. It is noteworthy that the lateral hypothalamus showed no effects of either manipulation. Gene expression is discussed in the context of behavioral and physiological measures previously published.

  15. AAV ancestral reconstruction library enables selection of broadly infectious viral variants.

    Science.gov (United States)

    Santiago-Ortiz, J; Ojala, D S; Westesson, O; Weinstein, J R; Wong, S Y; Steinsapir, A; Kumar, S; Holmes, I; Schaffer, D V

    2015-12-01

    Adeno-associated virus (AAV) vectors have achieved clinical efficacy in treating several diseases. However, enhanced vectors are required to extend these landmark successes to other indications and protein engineering approaches may provide the necessary vector improvements to address such unmet medical needs. To generate new capsid variants with potentially enhanced infectious properties and to gain insights into AAV's evolutionary history, we computationally designed and experimentally constructed a putative ancestral AAV library. Combinatorial variations at 32 amino acid sites were introduced to account for uncertainty in their identities. We then analyzed the evolutionary flexibility of these residues, the majority of which have not been previously studied, by subjecting the library to iterative selection on a representative cell line panel. The resulting variants exhibited transduction efficiencies comparable to the most efficient extant serotypes and, in general, ancestral libraries were broadly infectious across the cell line panel, indicating that they favored promiscuity over specificity. Interestingly, putative ancestral AAVs were more thermostable than modern serotypes and did not use sialic acids, galactose or heparan sulfate proteoglycans for cellular entry. Finally, variants mediated 19- to 31-fold higher gene expression in the muscle compared with AAV1, a clinically used serotype for muscle delivery, highlighting their promise for gene therapy. PMID:26186661

  16. Ancestral sleep.

    Science.gov (United States)

    de la Iglesia, Horacio O; Moreno, Claudia; Lowden, Arne; Louzada, Fernando; Marqueze, Elaine; Levandovski, Rosa; Pilz, Luisa K; Valeggia, Claudia; Fernandez-Duque, Eduardo; Golombek, Diego A; Czeisler, Charles A; Skene, Debra J; Duffy, Jeanne F; Roenneberg, Till

    2016-04-01

    While we do not yet understand all the functions of sleep, its critical role for normal physiology and behaviour is evident. Its amount and temporal pattern depend on species and condition. Humans sleep about a third of the day with the longest, consolidated episode during the night. The change in lifestyle from hunter-gatherers via agricultural communities to densely populated industrialized centres has certainly affected sleep, and a major concern in the medical community is the impact of insufficient sleep on health [1,2]. One of the causal mechanisms leading to insufficient sleep is altered exposure to the natural light-dark cycle. This includes the wide availability of electric light, attenuated exposure to daylight within buildings, and evening use of light-emitting devices, all of which decrease the strength of natural light-dark signals that entrain circadian systems [3]. PMID:27046809

  17. Geology of the Grove Mountains in East Antarctica--New evidence for the final suture of Gondwana Land

    Institute of Scientific and Technical Information of China (English)

    刘小汉; 赵越; 刘晓春; 俞良军

    2003-01-01

    Grove Mountains consists mainly of a series of high-grade (upper amphibolite to granulite facies) metamorphic rocks, including felsic granulite, granitic gneiss, mafic granulite lenses and charnockite, intruded by late tectonic gneissic granite and post-tectonic granodioritic veins. Geochemical analysis demonstrates that the charnockite, granitic gneiss and granite belonged to aluminous A type plutonic rocks, whereas the felsic and mafic granulite were from supracrustal materials as island-arc, oceanic island and middle oceanic ridge basalt. A few high-strained shear zones disperse in regional stable sub-horizontal foliated metamorphic rocks. Three generations of ductile deformation were identified, in which D1 is related to the event before Pan-African age, D2 corresponds to the regional granulite peak metamorphism, whereas D3 reflects ductile extension in late Pan-African orogenic period. The metamorphic reactions from granitic gneiss indicate a single granulite facies event, but 3 steps from mafic granulite, with P-T condition of M1 800℃, 9.3×105 Pa; M2 800-810℃, 6.4×105 Pa ; and M3 650℃ have been recognized. The U-Pb age data from representative granitic gneiss indicate (529±14) Ma of peak metamorphism, (534±5) Ma of granite emplacement, and (501±7) Ma of post-tectonic granodioritic veins. All these evidences suggest that a huge Pan-African aged mobile belt exists in the East Antarctic Shield extending from Prydz Bay via Grove Mountains to the southern Prince Charles Mountains. This orogenic belt could be the final suture during the Gondwana Land assemblage.

  18. Numerical modeling of Gondwana coal seams in India as coalbed methane reservoirs substituted for carbon dioxide sequestration

    International Nuclear Information System (INIS)

    India has recently witnessed the production of coalbed methane (CBM) on a commercial scale. The analysis of Garg and Shukla (2009) summarizes that initial carbon dioxide storage opportunities should be ventured in CBM sector where the effective cost of the process is partly lowered due to enhanced recovery of methane. This research work was carried out to understand and establish the technical feasibility of CO2 driven enhanced CBM recovery in Indian coals. A regional scale underground coal seam/block was modeled using a commercial reservoir simulator, COMET3. It was found that approximately 218 Mm3 of CO2 can be sequestered in place of 74 Mm3 of CH4 produced from the chosen dimensions of coal block. The changes in fracture gas saturation, matrix CO2 concentration and matrix CH4 concentration with space and time were monitored. Eventually, the numerical values for peak saturation at certain time intervals have been reported. This study is an initial technical estimate for CO2 driven ECBM (enhanced coalbed methane) at a regional scale in India. The results are expected to prove useful not only to reduce India's contribution to greenhouse gases emission into the atmosphere but also to partially meet with the growing energy demand by enhanced recovery of methane from deep, unminable coal seams. -- Highlights: ► Critical numerical simulation of storage of CO2 in coal vis-à-vis capture of natural gas. ► Approximately 218 Mm3 of CO2 can be sequestered in the chosen dimensions of Gondwana coal block. ► A total of 74 Mm3 of CH4 can be produced for the period of study (4000 days). ► Monitoring matrix gas saturation, fracture CO2-CBM saturation with space and time. ► A brief review on possible CO2 sinks in India.

  19. Tethyan, Mediterranean, and Pacific analogues for the Neoproterozoic Paleozoic birth and development of peri-Gondwanan terranes and their transfer to Laurentia and Laurussia

    Science.gov (United States)

    Keppie, J. Duncan; Nance, R. Damian; Murphy, J. Brendan; Dostal, J.

    2003-04-01

    Modern Tethyan, Mediterranean, and Pacific analogues are considered for several Appalachian, Caledonian, and Variscan terranes (Carolina, West and East Avalonia, Oaxaquia, Chortis, Maya, Suwannee, and Cadomia) that originated along the northern margin of Neoproterozoic Gondwana. These terranes record a protracted geological history that includes: (1) ˜1 Ga (Carolina, Avalonia, Oaxaquia, Chortis, and Suwannee) or ˜2 Ga (Cadomia) basement; (2) 750-600 Ma arc magmatism that diachronously switched to rift magmatism between 590 and 540 Ma, accompanied by development of rift basins and core complexes, in the absence of collisional orogenesis; (3) latest Neoproterozoic-Cambrian separation of Avalonia and Carolina from Gondwana leading to faunal endemism and the development of bordering passive margins; (4) Ordovician transport of Avalonia and Carolina across Iapetus terminating in Late Ordovician-Early Silurian accretion to the eastern Laurentian margin followed by dispersion along this margin; (5) Siluro-Devonian transfer of Cadomia across the Rheic Ocean; and (6) Permo-Carboniferous transfer of Oaxaquia, Chortis, Maya, and Suwannee during the amalgamation of Pangea. Three potential models are provided by more recent tectonic analogues: (1) an "accordion" model based on the orthogonal opening and closing of Alpine Tethys and the Mediterranean; (2) a "bulldozer" model based on forward-modelling of Australia during which oceanic plateaus are dispersed along the Australian plate margin; and (3) a "Baja" model based on the Pacific margin of North America where the diachronous replacement of subduction by transform faulting as a result of ridge-trench collision has been followed by rifting and the transfer of Baja California to the Pacific Plate. Future transport and accretion along the western Laurentian margin may mimic that of Baja British Columbia. Present geological data for Avalonia and Carolina favour a transition from a "Baja" model to a "bulldozer" model. By

  20. Tectonic insight based on anisotropy of magnetic susceptibility and compaction studies in the Sierras Australes thrust and fold belt (southwest Gondwana boundary, Argentina)

    Science.gov (United States)

    Arzadún, Guadalupe; Tomezzoli, Renata N.; Cesaretti, Nora N.

    2016-04-01

    The Sierras Australes fold and thrust belt (Buenos Aires Province, Argentina) was in the southwestern Gondwanaland margin during the Paleozoic. The Tunas Formation (Permian) is exposed along the eastern part of it and continues eastward beneath the Claromecó Basin. Anisotropy of magnetic susceptibility (AMS) and compaction studies are described and compared with previous paleomagnetic studies with the aim of determining direction and magnitude of the main stresses acting during the sedimentation of the Tunas Formation. The anisotropy ellipsoids are triaxial with oblate or prolate shapes, reflecting different stages of layer parallel shortening during the evolution of the basin. Kmax axes trend NW-SE, parallel to the fold axes, while Kmin move from a horizontal (base) to a vertical orientation at the top of the succession, showing a change from a tectonic to almost a sedimentary fabric. The magnitude of anisotropy and compaction degree decreases toward the top of the succession. The AMS results are consistent with the outcrop structural observations and the compaction and paleomagnetic data. Regional pattern indicates a compression from the SW along this part of Gondwana, with a migration of the orogenic front and attenuation toward the NE in the foreland basin during the Upper Paleozoic. This deformation, locally assigned to the San Rafael noncollisional orogenic phase, is the result of the latitudinal movements toward the Equator of Gondwana (southern plates) and Laurentia (northern plates) during the Permian. This movement is the result of a rearrangement of the microplates that collided with Gondwana during the Late Devonian, to configure Pangea during the Triassic.

  1. Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis

    Directory of Open Access Journals (Sweden)

    Pearson Gareth A

    2011-01-01

    Full Text Available Abstract Background Hybridization or divergence between sympatric sister species provides a natural laboratory to study speciation processes. The shared polymorphism in sister species may either be ancestral or derive from hybridization, and the accuracy of analytic methods used thus far to derive convincing evidence for the occurrence of present day hybridization is largely debated. Results Here we propose the application of network analysis to test for the occurrence of present day hybridization between the two species of brown algae Fucus spiralis and F. vesiculosus. Individual-centered networks were analyzed on the basis of microsatellite genotypes from North Africa to the Pacific American coast, through the North Atlantic. Two genetic distances integrating different time steps were used, the Rozenfeld (RD; based on alleles divergence and the Shared Allele (SAD; based on alleles identity distances. A diagnostic level of genotype divergence and clustering of individuals from each species was obtained through RD while screening for exchanges through putative hybridization was facilitated using SAD. Intermediate individuals linking both clusters on the RD network were those sampled at the limits of the sympatric zone in Northwest Iberia. Conclusion These results suggesting rare hybridization were confirmed by simulation of hybrids and F2 with directed backcrosses. Comparison with the Bayesian method STRUCTURE confirmed the usefulness of both approaches and emphasized the reliability of network analysis to unravel and study hybridization

  2. Neanderthal and Denisova genetic affinities with contemporary humans: introgression versus common ancestral polymorphisms.

    Science.gov (United States)

    Lowery, Robert K; Uribe, Gabriel; Jimenez, Eric B; Weiss, Mark A; Herrera, Kristian J; Regueiro, Maria; Herrera, Rene J

    2013-11-01

    Analyses of the genetic relationships among modern humans, Neanderthals and Denisovans have suggested that 1-4% of the non-Sub-Saharan African gene pool may be Neanderthal derived, while 6-8% of the Melanesian gene pool may be the product of admixture between the Denisovans and the direct ancestors of Melanesians. In the present study, we analyzed single nucleotide polymorphism (SNP) diversity among a worldwide collection of contemporary human populations with respect to the genetic constitution of these two archaic hominins and Pan troglodytes (chimpanzee). We partitioned SNPs into subsets, including those that are derived in both archaic lineages, those that are ancestral in both archaic lineages and those that are only derived in one archaic lineage. By doing this, we have conducted separate examinations of subsets of mutations with higher probabilities of divergent phylogenetic origins. While previous investigations have excluded SNPs from common ancestors in principal component analyses, we included common ancestral SNPs in our analyses to visualize the relative placement of the Neanderthal and Denisova among human populations. To assess the genetic similarities among the various hominin lineages, we performed genetic structure analyses to provide a comparison of genetic patterns found within contemporary human genomes that may have archaic or common ancestral roots. Our results indicate that 3.6% of the Neanderthal genome is shared with roughly 65.4% of the average European gene pool, which clinally diminishes with distance from Europe. Our results suggest that Neanderthal genetic associations with contemporary non-Sub-Saharan African populations, as well as the genetic affinities observed between Denisovans and Melanesians most likely result from the retention of ancient mutations in these populations. PMID:23872234

  3. Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra

    Directory of Open Access Journals (Sweden)

    Azevedo Nathália F

    2012-03-01

    Full Text Available Abstract Background Xenarthra (sloths, armadillos and anteaters represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autosomes and X-chromosome specific probes on metaphases of two three-toed sloths: Bradypus torquatus and B. variegatus. These species represent the fourth of the five extant Xenarthra families to be studied with this approach. Results Eleven human chromosomes were conserved as one block in both B. torquatus and B. variegatus: (HSA 5, 6, 9, 11, 13, 14, 15, 17, 18, 20, 21 and the X chromosome. B. torquatus, three additional human chromosomes were conserved intact (HSA 1, 3 and 4. The remaining human chromosomes were represented by two or three segments on each sloth. Seven associations between human chromosomes were detected in the karyotypes of both B. torquatus and B. variegatus: HSA 3/21, 4/8, 7/10, 7/16, 12/22, 14/15 and 17/19. The ancestral Eutherian association 16/19 was not detected in the Bradypus species. Conclusions Our results together with previous reports enabled us to propose a hypothetical ancestral Xenarthran karyotype with 48 chromosomes that would differ from the proposed ancestral Eutherian karyotype by the presence of the association HSA 7/10 and by the split of HSA 8 into three blocks, instead of the two found in the Eutherian ancestor. These same chromosome features point to the monophyly of Xenarthra, making this the second supraorder of placental mammals to have a chromosome signature supporting its monophyly.

  4. Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra

    Science.gov (United States)

    2012-01-01

    Background Xenarthra (sloths, armadillos and anteaters) represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autosomes and X-chromosome specific probes on metaphases of two three-toed sloths: Bradypus torquatus and B. variegatus. These species represent the fourth of the five extant Xenarthra families to be studied with this approach. Results Eleven human chromosomes were conserved as one block in both B. torquatus and B. variegatus: (HSA 5, 6, 9, 11, 13, 14, 15, 17, 18, 20, 21 and the X chromosome). B. torquatus, three additional human chromosomes were conserved intact (HSA 1, 3 and 4). The remaining human chromosomes were represented by two or three segments on each sloth. Seven associations between human chromosomes were detected in the karyotypes of both B. torquatus and B. variegatus: HSA 3/21, 4/8, 7/10, 7/16, 12/22, 14/15 and 17/19. The ancestral Eutherian association 16/19 was not detected in the Bradypus species. Conclusions Our results together with previous reports enabled us to propose a hypothetical ancestral Xenarthran karyotype with 48 chromosomes that would differ from the proposed ancestral Eutherian karyotype by the presence of the association HSA 7/10 and by the split of HSA 8 into three blocks, instead of the two found in the Eutherian ancestor. These same chromosome features point to the monophyly of Xenarthra, making this the second supraorder of placental mammals to have a chromosome signature supporting its monophyly. PMID:22429690

  5. Ancestral polymorphism and recent invasion of transposable elements in Drosophila species

    Directory of Open Access Journals (Sweden)

    Dias Elaine

    2012-07-01

    Full Text Available Abstract Background During the evolution of transposable elements, some processes, such as ancestral polymorphisms and horizontal transfer of sequences between species, can produce incongruences in phylogenies. We investigated the evolutionary history of the transposable elements Bari and 412 in the sequenced genomes of the Drosophila melanogaster group and in the sibling species D. melanogaster and D. simulans using traditional phylogenetic and network approaches. Results Maximum likelihood (ML phylogenetic analyses revealed incongruences and unresolved relationships for both the Bari and 412 elements. The DNA transposon Bari within the D. ananassae genome is more closely related to the element of the melanogaster complex than to the sequence in D. erecta, which is inconsistent with the species phylogeny. Divergence analysis and the comparison of the rate of synonymous substitutions per synonymous site of the Bari and host gene sequences explain the incongruence as an ancestral polymorphism that was inherited stochastically by the derived species. Unresolved relationships were observed in the ML phylogeny of both elements involving D. melanogaster, D. simulans and D. sechellia. A network approach was used to attempt to resolve these relationships. The resulting tree suggests recent transfers of both elements between D. melanogaster and D. simulans. The divergence values of the elements between these species support this conclusion. Conclusions We showed that ancestral polymorphism and recent invasion of genomes due to introgression or horizontal transfer between species occurred during the evolutionary history of the Bari and 412 elements in the melanogaster group. These invasions likely occurred in Africa during the Pleistocene, before the worldwide expansion of D. melanogaster and D. simulans.

  6. The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida is ancestral within the deuterostomes

    Directory of Open Access Journals (Sweden)

    Lanfear Robert

    2009-05-01

    Full Text Available Abstract Background Mitochondrial genome comparisons contribute in multiple ways when inferring animal relationships. As well as primary sequence data, rare genomic changes such as gene order, shared gene boundaries and genetic code changes, which are unlikely to have arisen through convergent evolution, are useful tools in resolving deep phylogenies. Xenoturbella bocki is a morphologically simple benthic marine worm recently found to belong among the deuterostomes. Here we present analyses comparing the Xenoturbella bocki mitochondrial gene order, genetic code and control region to those of other metazoan groups. Results The complete mitochondrial genome sequence of Xenoturbella bocki was determined. The gene order is most similar to that of the chordates and the hemichordates, indicating that this conserved mitochondrial gene order might be ancestral to the deuterostome clade. Using data from all phyla of deuterostomes, we infer the ancestral mitochondrial gene order for this clade. Using inversion and breakpoint analyses of metazoan mitochondrial genomes, we test conflicting hypotheses for the phylogenetic placement of Xenoturbella and find a closer affinity to the hemichordates than to other metazoan groups. Comparative analyses of the control region reveal similarities in the transcription initiation and termination sites and origin of replication of Xenoturbella with those of the vertebrates. Phylogenetic analyses of the mitochondrial sequence indicate a weakly supported placement as a basal deuterostome, a result that may be the effect of compositional bias. Conclusion The mitochondrial genome of Xenoturbella bocki has a very conserved gene arrangement in the deuterostome group, strikingly similar to that of the hemichordates and the chordates, and thus to the ancestral deuterostome gene order. Similarity to the hemichordates in particular is suggested by inversion and breakpoint analysis. Finally, while phylogenetic analyses of the

  7. Contrasting determinants of abundance in ancestral and colonized ranges of an invasive brood parasite

    Science.gov (United States)

    Hahn, D.C.; O'Connor, R.J.

    2002-01-01

    Avian species distributions are typically regarded as constrained by spatially extensive variables such as climate, habitat, spatial patchiness, and microhabitat attributes. We hypothesized that the distribution of a brood parasite depends as strongly on host distribution patterns as on biophysical factors and examined this hypothesis with respect to the national distribution of the Brown-headed Cowbird (Molothrus ater). We applied a classification and regression (CART) analysis to data from the Breeding Bird Survey (BBS) and the Christmas Bird Count (CBC) and derived hierarchically organized statistical models of the influence of climate and weather, cropping and land use, and host abundance and distribution on the distribution of the Brown-headed Cowbird within the conterminous United States. The model accounted for 47.2% of the variation in cowbird incidence, and host abundance was the top predictor with an R2 of 18.9%. The other predictors identified by the model (crops 15.7%, weather and climate 14.3%, and region 9.6%) fit the ecological profile of this cowbird. We showed that host abundance was independent of these environmental predictors of cowbird distribution. At the regional scale host abundance played a very strong role in determining cowbird abundance in the cowbird?s colonized range east and west of their ancestral range in the Great Plains (26.6%). Crops were not a major predictor for cowbirds in their ancestral range, although they are the most important predictive factor (33%) for the grassland passerines that are the cowbird?s ancestral hosts. Consequently our findings suggest that the distribution of hosts does indeed take precedence over habitat attributes in shaping the cowbird?s distribution at a national scale, within an envelope of constraint set by biophysical factors.

  8. Characterization of GnRH-related peptides from the Pacific oyster Crassostrea gigas

    OpenAIRE

    Bigot, Laetitia; Zatylny-gaudin, Celine; Rodet, Franck; Bernay, Benoit; Boudry, Pierre; Favrel, Pascal

    2012-01-01

    Gonadotropin-releasing hormone (GnRH), a key neuropeptide regulating reproduction in vertebrates has now been characterized in a number of non-vertebrate species. Despite the demonstration of its ancestral origin, the structure and the function of this family of peptides remain poorly known in species as distant as lophotrochozoans. In this study, two GnRH-related peptides (Cg-GnRH-a and CgGnRH-G) were characterized by mass spectrometry from extracts of the visceral ganglia of the Pacific oys...

  9. Analysis of Ancestral and Functionally Relevant CD5 Variants in Systemic Lupus Erythematosus Patients

    OpenAIRE

    Maria Carmen Cenit; Mario Martínez-Florensa; Marta Consuegra; Lizette Bonet; Elena Carnero-Montoro; Noelia Armiger; Miguel Caballero-Baños; Maria Teresa Arias; Daniel Benitez; Norberto Ortego-Centeno; Enrique de Ramón; José Mario Sabio; García-Hernández, Francisco J; Carles Tolosa; Ana Suárez

    2014-01-01

    Objective: CD5 plays a crucial role in autoimmunity and is a well-established genetic risk factor of developing RA. Recently, evidence of positive selection has been provided for the CD5 Pro224-Val471 haplotype in East Asian populations. The aim of the present work was to further analyze the functional relevance of non-synonymous CD5 polymorphisms conforming the ancestral and the newly derived haplotypes (Pro224-Ala471 and Pro224-Val471, respectively) as well as to investigate the potential r...

  10. Ancestral heritage saves tribes during 1 April 2007 Solomon Islands tsunami

    Science.gov (United States)

    Fritz, Hermann M.; Kalligeris, Nikos

    2008-01-01

    The 1 April 2007 magnitude Ms 8.1 earthquake off the New Georgia Group in the Solomon Islands generated a tsunami that killed 52 with locally focused run-up heights of 12 m, local flow depths of 5 m as well as tectonic uplift up to 3.6 m and subsidence down to -1.5 m. A reconnaissance team deployed within one week investigated 65 coastal settlements on 13 remote Islands. The ancestral heritage ``run to high ground after an earthquake'' passed on to younger generations by survivors of smaller historic tsunamis triggered an immediate spontaneous self evacuation containing the death toll.

  11. Hf and Nd isotopes in Early Ordovician to Early Carboniferous granites as monitors of crustal growth in the Proto-Andean margin of Gondwana

    OpenAIRE

    Juan A Dahlquist; Pankhurst, Robert J.; Gaschnig, Richard M.; Rapela, Carlos W.; Casquet, César; Alasino, Pablo H.; Galindo, Carmen; Edgardo G Baldo

    2013-01-01

    We report the first study integrating in situ U–Pb and Hf isotope data from magmatic zircon and whole-rock Sm–Nd isotope data for granitic rocks of the Sierras Pampeanas, Argentina, in order to evaluate the Palaeozoic growth of the proto-Andean margin of Gondwana. Early–Middle Ordovician granitic magmatism is by far the most voluminous of the Sierras Pampeanas and represents the most significant magmatic event. These calc-alkaline granitoids were intruded at an active continental margin. εHft...

  12. Abrupt spatial and geochemical changes in lamprophyre magmatism related to Gondwana fragmentation prior, during and after opening of the Tasman Sea

    DEFF Research Database (Denmark)

    van der Meer, Quinten; Storey, Michael; Scott, James;

    2016-01-01

    the inception of opening of the Tasman Sea. Magmatic quiescence followed until ~72–68Ma,when another swarmof dikes was emplaced. The composition of the dikes reveals a dramatic change in primary melt sources while continental extension and lithospheric thinning were ongoing. The 102–100 Ma South...... Westland dikes represent the last mafic calc-alkaline magmatism Associated with a long-lived history of the area as Gondwana's active margin. The 92–84 Ma North and 72–68 Ma Central Westland dike swarms on the other hand have strongly alkaline compositions interpreted as melts from an intraplate source...

  13. Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure.

    Science.gov (United States)

    DeGiorgio, Michael; Rosenberg, Noah A

    2016-08-01

    In the last few years, several statistically consistent consensus methods for species tree inference have been devised that are robust to the gene tree discordance caused by incomplete lineage sorting in unstructured ancestral populations. One source of gene tree discordance that has only recently been identified as a potential obstacle for phylogenetic inference is ancestral population structure. In this article, we describe a general model of ancestral population structure, and by relying on a single carefully constructed example scenario, we show that the consensus methods Democratic Vote, STEAC, STAR, R(∗) Consensus, Rooted Triple Consensus, Minimize Deep Coalescences, and Majority-Rule Consensus are statistically inconsistent under the model. We find that among the consensus methods evaluated, the only method that is statistically consistent in the presence of ancestral population structure is GLASS/Maximum Tree. We use simulations to evaluate the behavior of the various consensus methods in a model with ancestral population structure, showing that as the number of gene trees increases, estimates on the basis of GLASS/Maximum Tree approach the true species tree topology irrespective of the level of population structure, whereas estimates based on the remaining methods only approach the true species tree topology if the level of structure is low. However, through simulations using species trees both with and without ancestral population structure, we show that GLASS/Maximum Tree performs unusually poorly on gene trees inferred from alignments with little information. This practical limitation of GLASS/Maximum Tree together with the inconsistency of other methods prompts the need for both further testing of additional existing methods and development of novel methods under conditions that incorporate ancestral population structure. PMID:27086043

  14. Control of deep lithospheric roots on crustal scale GOCE gravity and gradient fields evident in Gondwana reconstructions

    Science.gov (United States)

    Braitenberg, Carla; Mariani, Patrizia

    2015-04-01

    implications from complete Gondwana GOCE-products reconstructions and link to lithospheric roots. Proceedings of 5th International GOCE User Workshop, 25 - 28 November 2014. Braitenberg, C. (2015). Exploration of tectonic structures with GOCE in Africa and across-continents. Int. J.Appl. Earth Observ. Geoinf. 35, 88-95. http://dx.doi.org/10.1016/j.jag.2014.01.013 Braitenberg, C. (2015). A grip on geological units with GOCE, IAG Symp. 141, in press.

  15. Post-Gondwana geomorphic evolution of southwestern Africa: Implications for hte controls on landscape development from observations and numerical experiments

    Science.gov (United States)

    Gilchrist, Alan R.; Kooi, Henk; Beaumont, Christopher

    1994-01-01

    The relationship between morphology and surficial geology is used to quantify the denudation that has occurred across southwestern Africa sicne the fragmentation of Gondwana during the Early Mesozoic. Two main points emerge. Signficant denudation, of the order of kilometers, is widespread except in the Kalahari region of the continental interior. The denudation is systematically distributed so that the continental exterior catchment, draining directly to the Cape basin, is denuded to a greater depth than the interior catchment inland of the Great Escarpment. The analysis also implies tha the majority of the denudation occurred before the beginning of the Cenozoic for both teh exerior and interior catchments. Existing models of landscape development are reviewed, and implications of the denudation chronology are incorporated into a revised conceptual model. This revision implies tha thte primary effect of rifting on the subsequent landscape evolution is that it generates two distinct drainage regimes. A marginal upwarp, or rift flank uplift, separates rejuvenated rivers that drain into the subsiding rift from rivers in the continetal interior that are deflected but not rejuvenated. The two catchments evolve independently unless they are integrated by breaching of hte marginal upwarp. If this occurs, the exterior baselevel is communicated to the interior catchment that is denuded accordingly. Denudation rates generally decrease as the margin evolves, and this decrease is reinforced by the exposure of substrate that is resistant to denudation and/or a change to a more arid climate. The observations do not reveal a particular style of smaller-scale landscape evolution, sucha s escarpment retreat, that is responsible for the differential denudation across the region. It is proposed that numerical model experiments, which reflect the observational insights at the large scale, may identify the smaller-scale controls on escarpment development if the model and natural

  16. Sporadic inclusion body myositis in Japanese is associated with the MHC ancestral haplotype 52.1.

    Science.gov (United States)

    Scott, Adrian Phillip; Allcock, Richard James Nigel; Mastaglia, Frank; Nishino, Ichizo; Nonaka, Ikuya; Laing, Nigel

    2006-05-01

    In Caucasians, sporadic inclusion body myositis has been associated with the MHC ancestral haplotypes; HLA-A1, B8, DR3 (8.1AH) and HLA-B35, DR1 (35.2AH). It is not known whether these haplotypes carry susceptibility for the disease in other ethnic groups. We report here the results of HLA-B and -DRB1 typing using a high-resolution sequence-based technique in a cohort of 31 Japanese patients with definite sIBM. Patient allele frequencies were 40.3% for HLA-B*5201 (10.7% in controls: pHLA-DRB1*1502 (10% in controls: p<0.001). Both alleles were found together as part of a conserved haplotype (52.1AH) at a frequency of 37.1% in patients (8.4% in controls: p<0.001). This is the first description of a haplotypic MHC association with sporadic inclusion body myositis in Japanese patients. These findings indicate that different MHC ancestral haplotypes are associated with sIBM in different ethnic groups and further emphasize the importance of genetic factors in this condition. PMID:16564169

  17. Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages.

    Science.gov (United States)

    Andam, Cheryl P; Choudoir, Mallory J; Vinh Nguyen, Anh; Sol Park, Han; Buckley, Daniel H

    2016-07-01

    Streptomyces species produce many important antibiotics and have a crucial role in soil nutrient cycling. However, their evolutionary history remains poorly characterized. We have evaluated the impact of homologous recombination on the evolution of Streptomyces using multi-locus sequence analysis of 234 strains that represent at least 11 species clusters. Evidence of inter-species recombination is widespread but not uniform within the genus and levels of mosaicism vary between species clusters. Most phylogenetically incongruent loci are monophyletic at the scale of species clusters and their subclades, suggesting that these recombination events occurred in shared ancestral lineages. Further investigation of two mosaic species clusters suggests that genes acquired by inter-species recombination may have become fixed in these lineages during periods of demographic expansion; implicating a role for phylogeography in determining contemporary patterns of genetic diversity. Only by examining the phylogeny at the scale of the genus is apparent that widespread phylogenetically incongruent loci in Streptomyces are derived from a far smaller number of ancestral inter-species recombination events. PMID:26849310

  18. Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family

    Directory of Open Access Journals (Sweden)

    Velasco Riccardo

    2011-01-01

    Full Text Available Abstract Background Comparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. The growing body of genomics resources and sequence data for both Prunus and Fragaria permits detailed comparisons between these genera and the recently released Malus × domestica genome sequence. Results We generated a comparative analysis using 806 molecular markers that are anchored genetically to the Prunus and/or Fragaria reference maps, and physically to the Malus genome sequence. Markers in common for Malus and Prunus, and Malus and Fragaria, respectively were 784 and 148. The correspondence between marker positions was high and conserved syntenic blocks were identified among the three genera in the Rosaceae. We reconstructed a proposed ancestral genome for the Rosaceae. Conclusions A genome containing nine chromosomes is the most likely candidate for the ancestral Rosaceae progenitor. The number of chromosomal translocations observed between the three genera investigated was low. However, the number of inversions identified among Malus and Prunus was much higher than any reported genome comparisons in plants, suggesting that small inversions have played an important role in the evolution of these two genera or of the Rosaceae.

  19. Bearing the unbearable: ancestral transmission through dreams and moving metaphors in the analtyic field.

    Science.gov (United States)

    Pickering, Judith

    2012-11-01

    This paper explores how untold and unresolved intergenerational trauma may be transmitted through unconscious channels of communication, manifesting in the dreams of descendants. Unwitting carriers for that which was too horrific for their ancestors to bear, descendants may enter analysis through an unconscious need to uncover past secrets, piece together ancestral histories before the keys to comprehending their terrible inheritance die with their forebears. They seek the relational containment of the analytic relationship to provide psychological conditions to bear the unbearable, know the unknowable, speak the unspeakable and redeem the unredeemable. In the case of 'Rachael', initial dreams gave rise to what Hobson (1984) called 'moving metaphors of self' in the analytic field. Dream imagery, projective and introjective processes in the transference-countertransference dynamics gradually revealed an unknown ancestral history. I clarify the back and forth process from dream to waking dream thoughts to moving metaphors and differentiate the moving metaphor from a living symbol. I argue that the containment of the analytic relationship nested within the security of the analytic space is a necessary precondition for such healing processes to occur. PMID:23130614

  20. RNA-DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA.

    Science.gov (United States)

    Bar-Yaacov, Dan; Avital, Gal; Levin, Liron; Richards, Allison L; Hachen, Naomi; Rebolledo Jaramillo, Boris; Nekrutenko, Anton; Zarivach, Raz; Mishmar, Dan

    2013-11-01

    RNA transcripts are generally identical to the underlying DNA sequences. Nevertheless, RNA-DNA differences (RDDs) were found in the nuclear human genome and in plants and animals but not in human mitochondria. Here, by deep sequencing of human mitochondrial DNA (mtDNA) and RNA, we identified three RDD sites at mtDNA positions 295 (C-to-U), 13710 (A-to-U, A-to-G), and 2617 (A-to-U, A-to-G). Position 2617, within the 16S rRNA, harbored the most prevalent RDDs (>30% A-to-U and ∼15% A-to-G of the reads in all tested samples). The 2617 RDDs appeared already at the precursor polycistrone mitochondrial transcript. By using traditional Sanger sequencing, we identified the A-to-U RDD in six different cell lines and representative primates (Gorilla gorilla, Pongo pigmaeus, and Macaca mulatta), suggesting conservation of the mechanism generating such RDD. Phylogenetic analysis of more than 1700 vertebrate mtDNA sequences supported a thymine as the primate ancestral allele at position 2617, suggesting that the 2617 RDD recapitulates the ancestral 16S rRNA. Modeling U or G (the RDDs) at position 2617 stabilized the large ribosomal subunit structure in contrast to destabilization by an A (the pre-RDDs). Hence, these mitochondrial RDDs are likely functional. PMID:23913925

  1. Ancestral origin of the ATTCT repeat expansion in spinocerebellar ataxia type 10 (SCA10.

    Directory of Open Access Journals (Sweden)

    Teresa Almeida

    Full Text Available Spinocerebellar ataxia type 10 (SCA10 is an autosomal dominant neurodegenerative disease characterized by cerebellar ataxia and seizures. The disease is caused by a large ATTCT repeat expansion in the ATXN10 gene. The first families reported with SCA10 were of Mexican origin, but the disease was soon after described in Brazilian families of mixed Portuguese and Amerindian ancestry. The origin of the SCA10 expansion and a possible founder effect that would account for its geographical distribution have been the source of speculation over the last years. To unravel the mutational origin and spread of the SCA10 expansion, we performed an extensive haplotype study, using closely linked STR markers and intragenic SNPs, in families from Brazil and Mexico. Our results showed (1 a shared disease haplotype for all Brazilian and one of the Mexican families, and (2 closely-related haplotypes for the additional SCA10 Mexican families; (3 little or null genetic distance in small normal alleles of different repeat sizes, from the same SNP lineage, indicating that they are being originated by a single step mechanism; and (4 a shared haplotype for pure and interrupted expanded alleles, pointing to a gene conversion model for its generation. In conclusion, we show evidence for an ancestral common origin for SCA10 in Latin America, which might have arisen in an ancestral Amerindian population and later have been spread into the mixed populations of Mexico and Brazil.

  2. In silico resurrection of the major vault protein suggests it is ancestral in modern eukaryotes.

    Science.gov (United States)

    Daly, Toni K; Sutherland-Smith, Andrew J; Penny, David

    2013-01-01

    Vaults are very large oligomeric ribonucleoproteins conserved among a variety of species. The rat vault 3D structure shows an ovoid oligomeric particle, consisting of 78 major vault protein monomers, each of approximately 861 amino acids. Vaults are probably the largest ribonucleoprotein structures in eukaryote cells, being approximately 70 nm in length with a diameter of 40 nm--the size of three ribosomes and with a lumen capacity of 50 million Å(3). We use both protein sequences and inferred ancestral sequences for in silico virtual resurrection of tertiary and quaternary structures to search for vaults in a wide variety of eukaryotes. We find that the vault's phylogenetic distribution is widespread in eukaryotes, but is apparently absent in some notable model organisms. Our conclusion from the distribution of vaults is that they were present in the last eukaryote common ancestor but they have apparently been lost from a number of groups including fungi, insects, and probably plants. Our approach of inferring ancestral 3D and quaternary structures is expected to be useful generally. PMID:23887922

  3. Characterizing genetic diversity of contemporary pacific chickens using mitochondrial DNA analyses.

    Directory of Open Access Journals (Sweden)

    Kelsey Needham Dancause

    Full Text Available BACKGROUND: Mitochondrial DNA (mtDNA hypervariable region (HVR sequences of prehistoric Polynesian chicken samples reflect dispersal of two haplogroups--D and E--by the settlers of the Pacific. The distribution of these chicken haplogroups has been used as an indicator of human movement. Recent analyses suggested similarities between prehistoric Pacific and South American chicken samples, perhaps reflecting prehistoric Polynesian introduction of the chicken into South America. These analyses have been heavily debated. The current distribution of the D and E lineages among contemporary chicken populations in the Western Pacific is unclear, but might ultimately help to inform debates about the movements of humans that carried them. OBJECTIVES: We sought to characterize contemporary mtDNA diversity among chickens in two of the earliest settled archipelagos of Remote Oceania, the Marianas and Vanuatu. METHODS: We generated HVR sequences for 43 chickens from four islands in Vanuatu, and for 5 chickens from Guam in the Marianas. RESULTS: Forty samples from Vanuatu and three from Guam were assigned to haplogroup D, supporting this as a Pacific chicken haplogroup that persists in the Western Pacific. Two haplogroup E lineages were observed in Guam and two in Vanuatu. Of the E lineages in Vanuatu, one was identical to prehistoric Vanuatu and Polynesian samples and the other differed by one polymorphism. Contrary to our expectations, we observed few globally distributed domesticate lineages not associated with Pacific chicken dispersal. This might suggest less European introgression of chickens into Vanuatu than expected. If so, the E lineages might represent lineages maintained from ancient Pacific chicken introductions. The Vanuatu sample might thus provide an opportunity to distinguish between maintained ancestral Pacific chicken lineages and replacement by global domesticates through genomic analyses, which could resolve questions of contemporary

  4. Trans-Pacific Section

    Science.gov (United States)

    A trans-Pacific section along latitude 24.5°N is planned for 1985, with the field program tentatively scheduled for April 17 to June 27. The purpose of the expedition is to measure the transport of heat by ocean currents, to determine the net transport of water masses and estimate the meridional general circulation of the North Pacific, and to improve the mapping of tracer distributions in the deep North Pacific.Approximately 200 surface-to-bottom CTD/rosette stations will be occupied across the width of the ocean, with maximum station spacing of 80 km over abyssal plains, closing to 30-50 km over rough topography and boundaries. Water samples will be collected and analyzed on board for salinity, oxygen, and nutrients.

  5. Eastern Pacific Ocean Conference

    Science.gov (United States)

    The promotion of interaction among investigators of all oceanographic disciplines studying the eastern Pacific Ocean was the goal of the 1990 Eastern Pacific Ocean Conference (EPOC), held October 17-19 on the snow-covered slopes of Mt. Hood, Oreg. Thirty oceanographers representing all disciplines attended.Dick Barber, Duke University Marine Lab, Beaufort, N.C., chaired a session on the eastern equatorial Pacific Ocean, emphasizing issues related to biological activity. Steve Ramp of the Naval Postgraduate School in Montery, Calif., chaired a session on recent results from northern and central California experiments. On October 19, following an early morning earthquake, a business meeting and discussions regarding a collaboration in future experiments were held.

  6. Stroke and Native Hawaiians/Pacific Islanders

    Science.gov (United States)

    ... Population Profiles > Native Hawaiian/Other Pacific Islander > Stroke Stroke and Native Hawaiians/Pacific Islanders Native Hawaiians/Pacific ... non-Hispanic white adults to die from a stroke in 2010. In general, Native Hawaiian/Pacific Islander ...

  7. Fish faunas from the Late Jurassic (Tithonian) Vaca Muerta Formation of Argentina: One of the most important Jurassic marine ichthyofaunas of Gondwana

    Science.gov (United States)

    Gouiric-Cavalli, Soledad; Cione, Alberto Luis

    2015-11-01

    The marine deposits of the Vaca Muerta Formation (Tithonian-Berriasian) houses one of the most diverse Late Jurassic ichthyofaunas of Gondwana. However, most of the specimens remain undescribed. Jurassic fishes have been recovered from several localities at Neuquén Province (i.e., Picún Leufú, Plaza Huincul, Cerro Lotena, Portada Las Lajas, Los Catutos, and Arroyo Covunco) but also from Mendoza Province (i.e., La Valenciana, Los Molles, and Arroyo del Cajón Grande). Presently, the fish fauna of Los Catutos, near Zapala city (Neuquén Province), has yielded the highest number of specimens, which are taxonomically and morphologically diverse. At Los Catutos locality, the Vaca Muerta Formation is represented by the Los Catutos Member, which is considered the only lithographic limestones known in the Southern Hemisphere. Here, we review the Tithonian fish faunas from the Vaca Muerta Formation. During Late Jurassic times, the actual Argentinian territory could have been a morphological diversification center, at least for some actinopterygian groups. The apparently lower species diversity recorded in marine Jurassic ichthyofaunas of Argentina (and some Gondwanan countries) in comparison with Chilean and European fish faunas could be related to the fish paleontological research history in Gondwana and the low number of detailed studies of most of specimens recorded.

  8. Eolian deposits of the southwestern margin of the Botucatú paleoerg: Reconstruction of the Gondwana landscape in Central Northern Argentina

    Science.gov (United States)

    Peri, V. Gisel; Naipauer, Maximiliano; Pimentel, Marcio; Barcelona, Hernan

    2016-06-01

    The Mesozoic Botucatú paleoerg at the southwestern margin of Gondwana includes a succession of eolian dunes cross-strata which are presently exposed in Otumpa Hills (Central Northern Argentina). Here, the architectural facies, petrology, and provenance of those rocks were studied in order to investigate depositional environments and paleoclimates. The stratigraphic sequence included basal eolian two-dimensional crescentic dunes (Slp) overlain by three-dimensional crescentic dunes of smaller scale (Smt). These were correlated with the Upper Member Rivera of the Tacuarembó Formation (Uruguay), or its equivalent in Brazil, the Botucatú Formation. These outcrops partially mark the southwestern margin of the Botucatú paleoerg along the Chaco-Paraná Basin boundary. The paleocurrents from the W, NW, and SW and the U-Pb ages of detrital zircons indicate a main Pampean cratonic and secondary Andean magmatic arc (180 Ma) source. A detrital zircon of 180 Ma by U-Pb limits a maximum depositional age at 180 Ma (Toarcian) for facies Slp. Upwards, the phreatic silcrete and calcrete indicate semiarid conditions during the Paleocene, which are correlated with the Queguay Formation of Uruguay. A saprolite paleoweathering profile, recording wet tropical-hyper-tropical climate at the Early Eocene and representing the Gondwana landscape and climate conditions, crowns the sequence. This study represents the first provenance and surface texture analysis of minerals from the Botucatú paleoerg and was instrumental to unravel past environmental and sedimentary conditions.

  9. Magmatism during Gondwana breakup

    DEFF Research Database (Denmark)

    van der Meer, Quinten; Scott, J.M.; Waight, Tod Earle;

    2013-01-01

    Newly determined mid-late Cretaceous 40Ar/39Ar ages on megacrystic kaersutite from lamprophyre dikes in central and north Westland (New Zealand) are presented. These ages (88 Ma, 86 Ma and 68 Ma) indicate that the intrusion of mafic dikes was not necessarily restricted to the previously establish...

  10. South Pacific newsletter : 23

    OpenAIRE

    Kagoshima University Research Center for the Pacific Islands; カゴシマ ダイガク コクサイ トウショ キョウイク ケンキュウ センター; 鹿児島大学国際島嶼教育研究センター

    2012-01-01

    Kagoshima University and Kagoshima : Learning Curves / NARSEY Wadan Lal (Visiting Professor, Research Center for the Pacific Islands) [International Symposium] Small Islands : Ecology, Taxonomy and Ethnobiology [International Workshop] Interaction between Nature and People in the Coastal Areas of Fiji : A Case Study of an Important Industrial Species [Research Seminars] Where the Japanese Pandanus from? Botanical topics of Pandanaceae / MIYAMOTO Junko (Graduate School of ...

  11. Ancestral state reconstruction of body size in the Caniformia (Carnivora, Mammalia): the effects of incorporating data from the fossil record.

    Science.gov (United States)

    Finarelli, John A; Flynn, John J

    2006-04-01

    A recent molecular phylogeny of the mammalian order Carnivora implied large body size as the ancestral condition for the caniform subclade Arctoidea using the distribution of species mean body sizes among living taxa. "Extant taxa-only" approaches such as these discount character state observations for fossil members of living clades and completely ignore data from extinct lineages. To more rigorously reconstruct body sizes of ancestral forms within the Caniformia, body size and first appearance data were collected for 149 extant and 367 extinct taxa. Body sizes were reconstructed for four ancestral nodes using weighted squared-change parsimony on log-transformed body mass data. Reconstructions based on extant taxa alone favored large body sizes (on the order of 10 to 50 kg) for the last common ancestors of both the Caniformia and Arctoidea. In contrast, reconstructions incorporating fossil data support small body sizes (fossil data was discarded, body size reconstructions became ambiguous, demonstrating that incorporating both character state and temporal information from fossil taxa unambiguously supports a small ancestral body size, thereby falsifying hypotheses derived from extant taxa alone. Body size reconstructions for Caniformia, Arctoidea, and Musteloidea were not sensitive to potential errors introduced by uncertainty in the position of extinct lineages relative to the molecular topology, or to missing body size data for extinct members of an entire major clade (the aquatic Pinnipedia). Incorporating character state observations and temporal information from the fossil record into hypothesis testing has a significant impact on the ability to reconstruct ancestral characters and constrains the range of potential hypotheses of character evolution. Fossil data here provide the evidence to reliably document trends of both increasing and decreasing body size in several caniform clades. More generally, including fossils in such analyses incorporates evidence of

  12. ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun.

    Directory of Open Access Journals (Sweden)

    Ruiqiang Li

    2005-09-01

    Full Text Available We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist at high copy numbers across the genome and must not be so old that they are no longer recognizable in comparison to their ancestral sequences. Tested on the japonica rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences.

  13. The imperfect ancestral recombination graph reconstruction problem: upper bounds for recombination and homoplasy.

    Science.gov (United States)

    Lam, Fumei; Tarpine, Ryan; Istrail, Sorin

    2010-06-01

    One of the central problems in computational biology is the reconstruction of evolutionary histories. While models incorporating recombination and homoplasy have been studied separately, a missing component in the theory is a robust and flexible unifying model which incorporates both of these major biological events shaping genetic diversity. In this article, we introduce the first such unifying model and develop algorithms to find the optimal ancestral recombination graph incorporating recombinations and homoplasy events. The power of our framework is the connection between our formulation and the Directed Steiner Arborescence Problem in combinatorial optimization. We implement linear programming techniques as well as heuristics for the Directed Steiner Arborescence Problem, and use our methods to construct evolutionary histories for both simulated and real data sets. PMID:20583925

  14. Where did the chili get its spice? Biogeography of capsaicinoid production in ancestral wild chili species.

    Science.gov (United States)

    Tewksbury, Joshua J; Manchego, Carlos; Haak, David C; Levey, Douglas J

    2006-03-01

    The biogeography of pungency in three species of wild chili in the chaco and surrounding highland habitats of southeastern Bolivia is described. We report that Capsicum chacoense, C. baccatum, and C. eximium are polymorphic for production of capsaicin and its analogs, such that completely pungent and completely nonpungent individuals co-occur in some populations. In C. chacoense, the density of plants and the proportion of pungent plants increased with elevation. Above 900 m, all individuals in all populations except two were pungent; nonpungent individuals in at least one of the two polymorphic populations were likely a result of spreading by humans. The occurrence of pungent and nonpungent individuals in three species of ancestral Capsicum and the geographic variation of pungency within species suggest that production of capsaicin and its analogs entails both costs and benefits, which shift from one locality to another. Determining the selection pressures behind such shifts is necessary to understand the evolution of pungency in chilies. PMID:16572297

  15. A Study on Ground Water Resource Management in Gondwana Formations in Western Part of West Godavari District Andhra Pradesh India

    Science.gov (United States)

    Singara, S.

    2006-05-01

    Groundwater source forms nearly fifty percent of the total irrigation in the country. With green revolution, there has been an increasing demand for water for agricultural and this led to overexploitation of groundwater resources in many parts of the state and the study area is not an exception. With the success of groundwater exploration and development through deep tube wells in the study area, the farmers plunged into hectic activity of tapping groundwater. The present study was taken up to assess to groundwater recharge and draft in the area and to suggest remedial measures to redress overexploitation condition. The study area is underlain by a vide range of geological formations from Archean to Tertiary age. Crystallines consist of two-tier setting of aquifers with weathered and fracture zones. The Gondwana formations with Sandstone, shale and clay zones form unconfined to confined aquifer system. Deccan trap basalt occurs subsurface in some parts. Crystalline aquifers are exploited through borewells with a depth range of 29 to 101.5 m. Static water levels range in depth from 2.5 and 19.27 m bgl. Their yields range from 2.53 to 19.27 m3/hr. Sedimentary aquifers are exploited through tube wells with a depth range of 18 to 293 m and static water levels range from 2.1m agl to 48.0 m bgl. Yields of the wells vary form 1.3 to 67 m3 /hr. Groundwater is lifted by monoblock pumpsets of 5 HP in some places but mostly by submersible pumpsets with 5 to 12.5 HP. The tube wells are subjected to pumping from 5 to 18 hours per day depending on availability of electricity (power supply). They are operated form 90 days to throughout the year in different places. Groundwater development in the study area shows a steady increase since 1960 with number of tube wells uniformly increasing in each decade, from an initial figure of 592 wells in 1960 to 17,173 tube wells in 2002. Crop pattern was shifted from dry crops to paddy and sugar cane as major crops and irrigated dry crops

  16. Magmatism and Epithermal Gold-Silver Deposits of the Southern Ancestral Cascade Arc, Western Nevada and Eastern California

    Science.gov (United States)

    John, David A.; du Bray, Edward A.; Henry, Christopher D., (compiler); Vikre, Peter

    2015-01-01

    Many epithermal gold-silver deposits are temporally and spatially associated with late Oligocene to Pliocene magmatism of the southern ancestral Cascade arc in western Nevada and eastern California. These deposits, which include both quartz-adularia (low- and intermediate-sulfidation; Comstock Lode, Tonopah, Bodie) and quartz-alunite (high-sulfidation; Goldfield, Paradise Peak) types, were major producers of gold and silver. Ancestral Cascade arc magmatism preceded that of the modern High Cascades arc and reflects subduction of the Farallon plate beneath North America. Ancestral arc magmatism began about 45 Ma, continued until about 3 Ma, and extended from near the Canada-United States border in Washington southward to about 250 km southeast of Reno, Nevada. The ancestral arc was split into northern and southern segments across an inferred tear in the subducting slab between Mount Shasta and Lassen Peak in northern California. The southern segment extends between 42°N in northern California and 37°N in western Nevada and was active from about 30 to 3 Ma. It is bounded on the east by the northeast edge of the Walker Lane. Ancestral arc volcanism represents an abrupt change in composition and style of magmatism relative to that in central Nevada. Large volume, caldera-forming, silicic ignimbrites associated with the 37 to 19 Ma ignimbrite flareup are dominant in central Nevada, whereas volcanic centers of the ancestral arc in western Nevada consist of andesitic stratovolcanoes and dacitic to rhyolitic lava domes that mostly formed between 25 and 4 Ma. Both ancestral arc and ignimbrite flareup magmatism resulted from rollback of the shallowly dipping slab that began about 45 Ma in northeast Nevada and migrated south-southwest with time. Most southern segment ancestral arc rocks have oxidized, high potassium, calc-alkaline compositions with silica contents ranging continuously from about 55 to 77 wt%. Most lavas are porphyritic and contain coarse plagioclase

  17. Evolutionary history of assassin bugs (insecta: hemiptera: Reduviidae: insights from divergence dating and ancestral state reconstruction.

    Directory of Open Access Journals (Sweden)

    Wei Song Hwang

    Full Text Available Assassin bugs are one of the most successful clades of predatory animals based on their species numbers (∼6,800 spp. and wide distribution in terrestrial ecosystems. Various novel prey capture strategies and remarkable prey specializations contribute to their appeal as a model to study evolutionary pathways involved in predation. Here, we reconstruct the most comprehensive reduviid phylogeny (178 taxa, 18 subfamilies to date based on molecular data (5 markers. This phylogeny tests current hypotheses on reduviid relationships emphasizing the polyphyletic Reduviinae and the blood-feeding, disease-vectoring Triatominae, and allows us, for the first time in assassin bugs, to reconstruct ancestral states of prey associations and microhabitats. Using a fossil-calibrated molecular tree, we estimated divergence times for key events in the evolutionary history of Reduviidae. Our results indicate that the polyphyletic Reduviinae fall into 11-14 separate clades. Triatominae are paraphyletic with respect to the reduviine genus Opisthacidius in the maximum likelihood analyses; this result is in contrast to prior hypotheses that found Triatominae to be monophyletic or polyphyletic and may be due to the more comprehensive taxon and character sampling in this study. The evolution of blood-feeding may thus have occurred once or twice independently among predatory assassin bugs. All prey specialists evolved from generalist ancestors, with multiple evolutionary origins of termite and ant specializations. A bark-associated life style on tree trunks is ancestral for most of the lineages of Higher Reduviidae; living on foliage has evolved at least six times independently. Reduviidae originated in the Middle Jurassic (178 Ma, but significant lineage diversification only began in the Late Cretaceous (97 Ma. The integration of molecular phylogenetics with fossil and life history data as presented in this paper provides insights into the evolutionary history of

  18. Characterisation of monotreme caseins reveals lineage-specific expansion of an ancestral casein locus in mammals.

    Science.gov (United States)

    Lefèvre, Christophe M; Sharp, Julie A; Nicholas, Kevin R

    2009-01-01

    Using a milk-cell cDNA sequencing approach we characterised milk-protein sequences from two monotreme species, platypus (Ornithorhynchus anatinus) and echidna (Tachyglossus aculeatus) and found a full set of caseins and casein variants. The genomic organisation of the platypus casein locus is compared with other mammalian genomes, including the marsupial opossum and several eutherians. Physical linkage of casein genes has been seen in the casein loci of all mammalian genomes examined and we confirm that this is also observed in platypus. However, we show that a recent duplication of beta-casein occurred in the monotreme lineage, as opposed to more ancient duplications of alpha-casein in the eutherian lineage, while marsupials possess only single copies of alpha- and beta-caseins. Despite this variability, the close proximity of the main alpha- and beta-casein genes in an inverted tail-tail orientation and the relative orientation of the more distant kappa-casein genes are similar in all mammalian genome sequences so far available. Overall, the conservation of the genomic organisation of the caseins indicates the early, pre-monotreme development of the fundamental role of caseins during lactation. In contrast, the lineage-specific gene duplications that have occurred within the casein locus of monotremes and eutherians but not marsupials, which may have lost part of the ancestral casein locus, emphasises the independent selection on milk provision strategies to the young, most likely linked to different developmental strategies. The monotremes therefore provide insight into the ancestral drivers for lactation and how these have adapted in different lineages. PMID:19874726

  19. Genes Suggest Ancestral Colour Polymorphisms Are Shared across Morphologically Cryptic Species in Arctic Bumblebees.

    Directory of Open Access Journals (Sweden)

    Paul H Williams

    Full Text Available Our grasp of biodiversity is fine-tuned through the process of revisionary taxonomy. If species do exist in nature and can be discovered with available techniques, then we expect these revisions to converge on broadly shared interpretations of species. But for the primarily arctic bumblebees of the subgenus Alpinobombus of the genus Bombus, revisions by some of the most experienced specialists are unusual for bumblebees in that they have all reached different conclusions on the number of species present. Recent revisions based on skeletal morphology have concluded that there are from four to six species, while variation in colour pattern of the hair raised questions as to whether at least seven species might be present. Even more species are supported if we accept the recent move away from viewing species as morphotypes to viewing them instead as evolutionarily independent lineages (EILs using data from genes. EILs are recognised here in practice from the gene coalescents that provide direct evidence for their evolutionary independence. We show from fitting both general mixed Yule/coalescent (GMYC models and Poisson-tree-process (PTP models to data for the mitochondrial COI gene that there is support for nine species in the subgenus Alpinobombus. Examination of the more slowly evolving nuclear PEPCK gene shows further support for a previously unrecognised taxon as a new species in northwestern North America. The three pairs of the most morphologically similar sister species are separated allopatrically and prevented from interbreeding by oceans. We also find that most of the species show multiple shared colour patterns, giving the appearance of mimicry among parts of the different species. However, reconstructing ancestral colour-pattern states shows that speciation is likely to have cut across widespread ancestral polymorphisms, without or largely without convergence. In the particular case of Alpinobombus, morphological, colour-pattern, and

  20. Transition from island-arc to passive setting on the continental margin of Gondwana: U-Pb zircon dating of Neoproterozoic metaconglomerates from the SE margin of the Teplá-Barrandian Unit, Bohemian Massif

    Czech Academy of Sciences Publication Activity Database

    Sláma, Jiří; Dunkley, D. J.; Kachlík, V.; Kusiak, M. A.

    2008-01-01

    Roč. 461, 1-4 (2008), s. 44-59. ISSN 0040-1951 Institutional research plan: CEZ:AV0Z30130516 Keywords : Bohemian Massif * Teplá–Barrandian Unit * Neoproterozoic * Armorican Terrane Assemblage * Gondwana * zircon dating Subject RIV: DB - Geology ; Mineralogy Impact factor: 1.677, year: 2008

  1. Three stages in the Late Paleozoic to Triassic magmatism of southwestern Gondwana, and the relationships with the volcanogenic events in coeval basins

    Science.gov (United States)

    Sato, Ana María; Llambías, Eduardo J.; Basei, Miguel A. S.; Castro, Carlos E.

    2015-11-01

    The intermediate to acid Choiyoi Magmatic Province is the most conspicuous feature along the Late Paleozic continental margin of southwestern Gondwana, and is generally regarded as the possible source for the widespread ash fall deposits interlayered with sedimentary sequences in the adjacent Gondwana basins. The Choiyoi magmatism is geologically constrained between the early Permian San Rafael orogenic phase and the Triassic extensional Huarpica phase in the region of Argentine Frontal Cordillera, Precordillera and San Rafael Block. In order to better assess the Choiyoi magmatism in Argentine Frontal Cordillera, we obtained 6 new LA-ICPMS U-Pb ages between 278.8 ± 3.4 Ma and 252.5 ± 1.9 Ma from plutonic rocks of the Colangüil Batholith and an associated volcanic rock. The global analysis of age data compiled from Chilean and Argentine Late Paleozoic to Triassic outcrops allows us to identify three stages of magmatism: (1) pre-Choiyoi orogenic magmatism, (2) Choiyoi magmatism (286-247 Ma), and (3) post-Choiyoi magmatism related to extensional tectonics. In the Choiyoi stage is there an eastward shift and expansion of the magmatism to the southeast, covering an extensive region that defines the Choiyoi magmatic province. On the basis of comparison with the ages from volcanogenic levels identified in the coeval Gondwana basins, we propose: (a) The pre-Choiyoi volcanism from the Paganzo basin (320-296 Ma) probably has a local source in addition to the Frontal Cordillera region. (b) The pre-Choiyoi and Choiyoi events identified in the Paraná basin (304-275 Ma) are likely to have their source in the Chilean Precordillera. (c) The early stage of the Choiyoi magmatism found in the Sauce Grande basin (284-281 Ma) may have come from the adjacent Las Matras to Chadileuvú blocks. (d) The pre-Choiyoi and Choiyoi events in the Karoo basins (302-253 Ma) include the longest Choiyoi interval, and as a whole bear the best resemblance to the age records along the Chilean and

  2. Antiquity of Ediacaran Fossils, Early Shelled Organisms, Recent Radiometric Age-Dates from India and Ancestral Biota

    Science.gov (United States)

    Basu, A.

    2008-03-01

    U-Pb zircon ages and Pb-Pb limestone ages assign Ediacaran and shelly fossils reported from India between 1750 and 950 Ma indicating ancestral diversification of metazoans. Simple bacterial life must have began earlier and may be found in meteorites.

  3. ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

    DEFF Research Database (Denmark)

    Li, Ruiqiang; Ye, Jia; Li, Songgang;

    2005-01-01

    in comparison to their ancestral sequences. Tested on the japonica rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences. Udgivelsesdato: 2005-Sep...

  4. Significance of transition between Talchir Formation and Karharbari Formation in Lower Gondwana basin evolution — A study in West Bokaro Coal basin, Jharkhand, India

    Indian Academy of Sciences (India)

    H N Bhattacharya; Abhijit Chakraborty; Biplab Bhattacharya

    2005-06-01

    Basal part of the Gondwana Supergroup represented by Talchir and Karharbari Formations (Permo-Carboniferous) records an abrupt change-over from glacio-marine to terrestrial fluviolacustrine depositional environment. The contact between the two is an unconformity. Facies analysis of the glacio-marine Talchir Formation reveals that basal glaciogenic and reworked glaciogenic sediments are buried under storm influenced inner and outer shelf sediments. Facies associations of the Karharbari Formation suggest deposition as fluvio-lacustrine deposits in fault-controlled troughs. An attempt has been made in this paper to explain the sedimentation pattern in Talchir and Karharbari basins, and the abrupt change-over from glacio-marine to terrestrial fluviolacustrine depositional environment in terms of glacio-isostacy.

  5. Modelos de cinemática de placas para Antártida durante la ruptura de Gondwana: una revisión

    OpenAIRE

    M.E. Ghidella; Lawver, L.A.; Marenssi, S.; L.M. Gahagan

    2007-01-01

    La historia de apertura del mar de Weddell y del Oc éano Atlántico Sur es crítica para comprender la ruptura de Gondwana y la evolución geológica de Antártida desde el Jurásico temprano. La dispersión de los fragmentos gondwánicos es importante para entender la circulación oceánica del pasado, descifrar la historia de las cuencas sedimentarias ubicadas al Este de la Península Antártica y establecer posibles rutas de dispersión de flora y fauna entre los continentes australes. Desafortunadamen...

  6. The Precambrian terranes of Yemen and their correlation with those of Saudi Arabia and Somalia: Implications for the accretion of Gondwana

    Science.gov (United States)

    Windley, B.F.; Whitehouse, M.J.; Stoeser, D.B.; Al-Khirbash, S.; Ba-Bttat, M. A. O.; Al-Ghotbah, A.

    2001-01-01

    Most of the basement of Yemen consists of early Precambrian continental high-grade terranes and Neoproterozoic low-grade island arcs that were accreted together to form an arc-continent collage during the Pan-African orogeny (Windley et al., 1996; Whitehouse et al., 1998; Whitehouse et al., in press). The suture zones between the arc and gneiss terranes are major crustal- scale tectonic boundaries. The terranes are situated east of the Nabitah suture and of the collage of low-grade, mainly island arc terranes of the Arabian Shield, but they have been reworked by a Neoproterozoic event associated with island arc accretion. Further east in Yemen are mostly unconformable, very weakly deformed and very low-grade or unmetamorphosed sediments. Thus Yemen provides key information on the broad zone of Neoproterozoic reworking associated with the collisional boundary between western and eastern Gondwana

  7. Neoproterozoic Western Gondwana assembly and subduction-related plutonism: the role of the Rio Negro Complex in the Ribeira Belt, Brazil

    International Nuclear Information System (INIS)

    The assembly of Western Gondwana, during the Neoproterozoic, involved the Sao Francisco/West Congo Craton and its passive margins. The Ribeira Belt lies along the Brazilian Atlantic Coast and is one of the products of the super continent amalgamation. Collisional processes were preceded by subduction, recorded by the Rio Negro Complex orthogneisses at the Ribeira Belt. Its plutonites represent a gabbro-diorite-tonalite-throndhjemite plutonic series that evolved from 637 Ma (U-Pb zircon age of the tonalite gneiss) to nearly 600 Ma, at the beginning of the collisional event. Field, petrographic, litogeochemical, and isotopic characteristics of the Rio Negro Complex point to magmatism at a very mature oceanic arc or an immature continental crust as seen along attenuated passive margins. in the latter hypothesis, the margin could be related to a microplate or to the Congo/Angola Craton. (author)

  8. Pacific Asia and the Asia Pacific: The Choices for APEC

    OpenAIRE

    C Fred Bergsten

    2009-01-01

    The Asia Pacific Economic Cooperation (APEC) forum, which set out to achieve "free and open trade and investment in the region" and led highly significant liberalization initiatives in the 1990s, has been stagnating for the past decade. The main cause of APEC's marginalization was clearly the decision of key Asian countries to prioritize economic cooperation within East Asia itself rather than across the broader APEC construct: a focus on Pacific Asia rather than the Asia Pacific. Bergsten ar...

  9. 周代宗庙礼制考%The Research on the Etiquettes of Zhou Dynasty’s Ancestral Temple

    Institute of Scientific and Technical Information of China (English)

    王启敏

    2015-01-01

    周代社会中与宗庙相关的礼制多种多样。宗庙始成要举行落成典礼,作歌诗以纪之。祭庙的形式可谓五花八门,而且祭者的态度要十分的恭敬、严谨。诸侯有丧事了,要在宗庙吊唁,规矩也很多。此外,如天子即位,天子(或诸侯)娶妻、嫁女、出国、归国、出征、凯旋等都要在宗庙举行郑重的祭告仪式。在宗庙的守护、装饰、迁移等方面,在当时也有着严格的、不同的礼节制度要遵守。%In Zhou dynasty the related ancestral temple customs are various. After the completion of ancestral temple, it should be inaugurated and poems should be made to memorize. The forms of memorial temples are varied. The attitude of the emperor and monarch muse be very respectful. The same was the monarch’s condolences at the ancestral temple. In addition, the ascending to the throne as emperor, or monarch, getting married or married abroad, returning to the homeland and triumphing must be held in the ancestral temple solemnly and be reported to ancestral temple. The temple’s guardian, decoration, migration and the others also have restricted rules to obey.

  10. Major strike-slip faulting along the tectonic boundary between East and West Antarctica: implications for early Gondwana break-up and Jurassic granitic magma emplacement

    Science.gov (United States)

    Jordan, T. A.; Ferraccioli, F.; Anderson, L.; Ross, N.; Corr, H.; Leat, P. T.; Bingham, R.; Rippin, D. M.; Le Brocq, A. M.; Siegert, M. J.

    2013-12-01

    The fragmentation of the Gondwana supercontinent began with continental rifting between the Weddell Sea region of Antarctica and South Africa during the Jurassic. This initial Jurassic phase of continental rifting is critical for understanding the process that initiated supercontinent breakup and dispersal, including the role of mantle plumes and major intracrustal tectonic structures. However, due to the remote location and blanketing ice sheets, the tectonic and magmatic evolution of the Weddell Sea Sector of Antarctica has remained relatively poorly understood. Our recent aeromagnetic and airborne gravity investigations have revealed the inland extent of the Weddell Sea Rift system beneath the West Antarctic Ice Sheet, and indicate the presence of a major left-lateral strike slip fault system separating the Ellsworth Whitmore block (a possible exotic microcontinent derived from the Natal Embayment, or the Shackleton Range region of East Antarctica) from East Antarctica (Jordan et al., 2013 Tectonophysics). In this study we use GPlates plate-tectonic reconstruction software to start evaluating the influence of strike-slip faulting between East and West Antarctica on Gondwana breakup models. Specifically, we investigate the possibility of poly-phase motion along the fault system and explore scenarios involving more diffuse strike slip faulting extending into the interior of East Antarctica in the hinterland of the Transantarctic Mountains. Our preliminary models suggest that there may be a link between the prominent step in the flank of the later Cretaceous-Cenozoic West Antarctic Rift System (at the southern end of Ellsworth-Whitmore Block) and the earlier Jurassic Weddell Sea rift system. Additionally, we present preliminary joint 3D magnetic and gravity models to investigate the crustal architecture of the proposed strike-slip fault system and assess its influence on the emplacement of voluminous Jurassic granitic magmatism along the boundary of the Ellsworth

  11. Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states

    Directory of Open Access Journals (Sweden)

    Grünewald Stefan

    2011-01-01

    Full Text Available Abstract Background As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all branches of a tree to explain the evolution of a character. Due to the extensive usage of this method, it has become a scientific endeavor in recent years to study the reconstruction accuracies of the Fitch method. However, most studies are restricted to 2-state evolutionary models and a study for higher-state models is needed since DNA sequences take the format of 4-state series and protein sequences even have 20 states. Results In this paper, the ambiguous and unambiguous reconstruction accuracy of the Fitch method are studied for N-state evolutionary models. Given an arbitrary phylogenetic tree, a recurrence system is first presented to calculate iteratively the two accuracies. As complete binary tree and comb-shaped tree are the two extremal evolutionary tree topologies according to balance, we focus on the reconstruction accuracies on these two topologies and analyze their asymptotic properties. Then, 1000 Yule trees with 1024 leaves are generated and analyzed to simulate real evolutionary scenarios. It is known that more taxa not necessarily increase the reconstruction accuracies under 2-state models. The result under N-state models is also tested. Conclusions In a large tree with many leaves, the reconstruction accuracies of using all taxa are sometimes less than those of using a leaf subset under N-state models. For complete binary trees, there always exists an equilibrium interval [a, b] of conservation probability, in which the limiting ambiguous reconstruction accuracy equals to the probability of randomly picking a state. The value b decreases with the increase of the number of states, and it seems to converge. When the conservation probability is greater than b, the reconstruction accuracies of the Fitch method increase rapidly. The reconstruction

  12. Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals

    Directory of Open Access Journals (Sweden)

    Danchin Etienne GJ

    2006-01-01

    Full Text Available Abstract Background Gene losses played a role which may have been as important as gene and genome duplications and rearrangements, in modelling today species' genomes from a common ancestral set of genes. The set and diversity of protein-coding genes in a species has direct output at the functional level. While gene losses have been reported in all the major lineages of the metazoan tree of life, none have proposed a focus on specific losses in the vertebrates and mammals lineages. In contrast, genes lost in protostomes (i.e. arthropods and nematodes but still present in vertebrates have been reported and extensively detailed. This probable over-anthropocentric way of comparing genomes does not consider as an important phenomena, gene losses in species that are usually described as "higher". However reporting universally conserved genes throughout evolution that have recently been lost in vertebrates and mammals could reveal interesting features about the evolution of our genome, particularly if these losses can be related to losses of capability. Results We report 11 gene families conserved throughout eukaryotes from yeasts (such as Saccharomyces cerevisiae to bilaterian animals (such as Drosophila melanogaster or Caenorhabditis elegans. This evolutionarily wide conservation suggests they were present in the last common ancestors of fungi and metazoan animals. None of these 11 gene families are found in human nor mouse genomes, and their absence generally extends to all vertebrates. A total of 8 out of these 11 gene families have orthologs in plants, suggesting they were present in the Last Eukaryotic Common Ancestor (LECA. We investigated known functional information for these 11 gene families. This allowed us to correlate some of the lost gene families to loss of capabilities. Conclusion Mammalian and vertebrate genomes lost evolutionary conserved ancestral genes that are probably otherwise not dispensable in eukaryotes. Hence, the human

  13. Elongation Factor-Tu (EF-Tu) proteins structural stability and bioinformatics in ancestral gene reconstruction

    Science.gov (United States)

    Dehipawala, Sunil; Nguyen, A.; Tremberger, G.; Cheung, E.; Schneider, P.; Lieberman, D.; Holden, T.; Cheung, T.

    2013-09-01

    A paleo-experimental evolution report on elongation factor EF-Tu structural stability results has provided an opportunity to rewind the tape of life using the ancestral protein sequence reconstruction modeling approach; consistent with the book of life dogma in current biology and being an important component in the astrobiology community. Fractal dimension via the Higuchi fractal method and Shannon entropy of the DNA sequence classification could be used in a diagram that serves as a simple summary. Results from biomedical gene research provide examples on the diagram methodology. Comparisons between biomedical genes such as EEF2 (elongation factor 2 human, mouse, etc), WDR85 in epigenetics, HAR1 in human specificity, DLG1 in cognitive skill, and HLA-C in mosquito bite immunology with EF Tu DNA sequences have accounted for the reported circular dichroism thermo-stability data systematically; the results also infer a relatively less volatility geologic time period from 2 to 3 Gyr from adaptation viewpoint. Comparison to Thermotoga maritima MSB8 and Psychrobacter shows that Thermus thermophilus HB8 EF-Tu calibration sequence could be an outlier, consistent with free energy calculation by NUPACK. Diagram methodology allows computer simulation studies and HAR1 shows about 0.5% probability from chimp to human in terms of diagram location, and SNP simulation results such as amoebic meningoencephalitis NAF1 suggest correlation. Extensions to the studies of the translation and transcription elongation factor sequences in Megavirus Chiliensis, Megavirus Lba and Pandoravirus show that the studied Pandoravirus sequence could be an outlier with the highest fractal dimension and lowest entropy, as compared to chicken as a deviant in the DNMT3A DNA methylation gene sequences from zebrafish to human and to the less than one percent probability in computer simulation using the HAR1 0.5% probability as reference. The diagram methodology would be useful in ancestral gene

  14. Earth - Pacific Ocean

    Science.gov (United States)

    1990-01-01

    This color image of the Earth was obtained by the Galileo spacecraft early Dec. 12, 1990, when the spacecraft was about 1.6 million miles from the Earth. The color composite used images taken through the red, green and violet filters. The Pacific Ocean covers virtually all of the visible disk of the Earth in this picture. The glint of the Sun reflected from smooth water is near the center. This is a frame of the Galileo Earth spin movie, a 500-frame time-lapse motion picture showing a 25-hour period of Earths rotation and atmospheric dynamics.

  15. Researching Pacific island livelihoods:

    DEFF Research Database (Denmark)

    Egelund Christensen, Andreas; Mertz, Ole

    2010-01-01

    Small island literature is vast in focus and aim, and is rooted in many different disciplines. The challenge is to find common grounds for researching small islands conceptually and theoretically. The aim of this article is to comment on how to research small islands, including a discussion on...... contemporary theories of nissology and conceptual analytical frameworks for island research. Through a review of selected case-study-based island literature on changing livelihoods coming out of the South Pacific, we wish to illustrate and discuss advantages of finding common grounds for small island studies...

  16. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European.

    Science.gov (United States)

    Olalde, Iñigo; Allentoft, Morten E; Sánchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W K; DeGiorgio, Michael; Prado-Martinez, Javier; Rodríguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramírez, Oscar; Marigorta, Urko M; Fernández-Callejo, Marcos; Prada, María Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G; Novembre, John; Sturm, Richard A; Sabeti, Pardis; Marquès-Bonet, Tomàs; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles

    2014-03-13

    Ancient genomic sequences have started to reveal the origin and the demographic impact of farmers from the Neolithic period spreading into Europe. The adoption of farming, stock breeding and sedentary societies during the Neolithic may have resulted in adaptive changes in genes associated with immunity and diet. However, the limited data available from earlier hunter-gatherers preclude an understanding of the selective processes associated with this crucial transition to agriculture in recent human evolution. Here we sequence an approximately 7,000-year-old Mesolithic skeleton discovered at the La Braña-Arintero site in León, Spain, to retrieve a complete pre-agricultural European human genome. Analysis of this genome in the context of other ancient samples suggests the existence of a common ancient genomic signature across western and central Eurasia from the Upper Paleolithic to the Mesolithic. The La Braña individual carries ancestral alleles in several skin pigmentation genes, suggesting that the light skin of modern Europeans was not yet ubiquitous in Mesolithic times. Moreover, we provide evidence that a significant number of derived, putatively adaptive variants associated with pathogen resistance in modern Europeans were already present in this hunter-gatherer. PMID:24463515

  17. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral "Salicoid" Genome Duplication.

    Science.gov (United States)

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-01-01

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the "salicoid" duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants. PMID:27352946

  18. Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures.

    Directory of Open Access Journals (Sweden)

    Mohan Manikkam

    Full Text Available Environmental factors during fetal development can induce a permanent epigenetic change in the germ line (sperm that then transmits epigenetic transgenerational inheritance of adult-onset disease in the absence of any subsequent exposure. The epigenetic transgenerational actions of various environmental compounds and relevant mixtures were investigated with the use of a pesticide mixture (permethrin and insect repellant DEET, a plastic mixture (bisphenol A and phthalates, dioxin (TCDD and a hydrocarbon mixture (jet fuel, JP8. After transient exposure of F0 gestating female rats during the period of embryonic gonadal sex determination, the subsequent F1-F3 generations were obtained in the absence of any environmental exposure. The effects on the F1, F2 and F3 generations pubertal onset and gonadal function were assessed. The plastics, dioxin and jet fuel were found to promote early-onset female puberty transgenerationally (F3 generation. Spermatogenic cell apoptosis was affected transgenerationally. Ovarian primordial follicle pool size was significantly decreased with all treatments transgenerationally. Differential DNA methylation of the F3 generation sperm promoter epigenome was examined. Differential DNA methylation regions (DMR were identified in the sperm of all exposure lineage males and found to be consistent within a specific exposure lineage, but different between the exposures. Several genomic features of the DMR, such as low density CpG content, were identified. Exposure-specific epigenetic biomarkers were identified that may allow for the assessment of ancestral environmental exposures associated with adult onset disease.

  19. Evidence from cyclostomes for complex regionalization of the ancestral vertebrate brain.

    Science.gov (United States)

    Sugahara, Fumiaki; Pascual-Anaya, Juan; Oisi, Yasuhiro; Kuraku, Shigehiro; Aota, Shin-ichi; Adachi, Noritaka; Takagi, Wataru; Hirai, Tamami; Sato, Noboru; Murakami, Yasunori; Kuratani, Shigeru

    2016-03-01

    The vertebrate brain is highly complex, but its evolutionary origin remains elusive. Because of the absence of certain developmental domains generally marked by the expression of regulatory genes, the embryonic brain of the lamprey, a jawless vertebrate, had been regarded as representing a less complex, ancestral state of the vertebrate brain. Specifically, the absence of a Hedgehog- and Nkx2.1-positive domain in the lamprey subpallium was thought to be similar to mouse mutants in which the suppression of Nkx2-1 leads to a loss of the medial ganglionic eminence. Here we show that the brain of the inshore hagfish (Eptatretus burgeri), another cyclostome group, develops domains equivalent to the medial ganglionic eminence and rhombic lip, resembling the gnathostome brain. Moreover, further investigation of lamprey larvae revealed that these domains are also present, ruling out the possibility of convergent evolution between hagfish and gnathostomes. Thus, brain regionalization as seen in crown gnathostomes is not an evolutionary innovation of this group, but dates back to the latest vertebrate ancestor before the divergence of cyclostomes and gnathostomes more than 500 million years ago. PMID:26878236

  20. WEB LOG PREPROCESSING BASED ON PARTIAL ANCESTRAL GRAPH TECHNIQUE FOR SESSION CONSTRUCTION

    Directory of Open Access Journals (Sweden)

    S.Chitra

    2012-10-01

    Full Text Available Web access log analysis is to analyze the patterns of web site usage and the features of users behavior. It is the fact that the normal Log data is very noisy and unclear and it is vital to preprocess the log data for efficient web usage mining process. Preprocessing comprises of three phases which includes data cleaning, user identification and session construction. Session construction is very vital and numerous real world problems can be modeled as traversals on graph and mining from these traversals would provide the requirement for preprocessing phase. On the other hand, the traversals on unweighted graph have been taken into consideration in existing works. This paper oversimplifies this to the case where vertices of graph are given weights to reflect their significance. The proposed method constructs sessions as a Partial Ancestral Graph which contains pages with calculated weights. This will help site administrators to find the interesting pages for users and to redesign their web pages. After weighting each page according to browsing time a PAG structure is constructed for each user session. Existing system in which there is a problem of learning with the latent variables of the data and the problem can be overcome by the proposed method.

  1. The ancestral circadian clock of monarch butterflies: role in time-compensated sun compass orientation.

    Science.gov (United States)

    Reppert, S M

    2007-01-01

    The circadian clock has a vital role in monarch butterfly (Danaus plexippus) migration by providing the timing component of time-compensated sun compass orientation, which contributes to navigation to the overwintering grounds. The location of circadian clock cells in monarch brain has been identified in the dorsolateral protocerebrum (pars lateralis); these cells express PERIOD, TIMELESS, and a Drosophila-like cryptochrome designated CRY1. Monarch butterflies, like all other nondrosophilid insects examined so far, express a second cry gene (designated insect CRY2) that encodes a vertebrate-like CRY that is also expressed in pars lateralis. An ancestral circadian clock mechanism has been defined in monarchs, in which CRY1 functions as a blue light photoreceptor for photic entrainment, whereas CRY2 functionswithin the clockwork as themajor transcriptional repressor of an intracellular negative transcriptional feedback loop. A CRY1-staining neural pathway has been identified that may connect the circadian (navigational) clock to polarized light input important for sun compass navigation, and a CRY2-positive neural pathway has been discovered that may communicate circadian information directly from the circadian clock to the central complex, the likely site of the sun compass. The monarch butterfly may thus use the CRY proteins as components of the circadian mechanism and also as output molecules that connect the clock to various aspects of the sun compass apparatus. PMID:18419268

  2. Detection of Weakly Conserved Ancestral Mammalian RegulatorySequences by Primate Comparisons

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Qian-fei; Prabhakar, Shyam; Chanan, Sumita; Cheng,Jan-Fang; Rubin, Edward M.; Boffelli, Dario

    2006-06-01

    Genomic comparisons between human and distant, non-primatemammals are commonly used to identify cis-regulatory elements based onconstrained sequence evolution. However, these methods fail to detectcryptic functional elements, which are too weakly conserved among mammalsto distinguish from nonfunctional DNA. To address this problem, weexplored the potential of deep intra-primate sequence comparisons. Wesequenced the orthologs of 558 kb of human genomic sequence, coveringmultiple loci involved in cholesterol homeostasis, in 6 nonhumanprimates. Our analysis identified 6 noncoding DNA elements displayingsignificant conservation among primates, but undetectable in more distantcomparisons. In vitro and in vivo tests revealed that at least three ofthese 6 elements have regulatory function. Notably, the mouse orthologsof these three functional human sequences had regulatory activity despitetheir lack of significant sequence conservation, indicating that they arecryptic ancestral cis-regulatory elements. These regulatory elementscould still be detected in a smaller set of three primate speciesincluding human, rhesus and marmoset. Since the human and rhesus genomesequences are already available, and the marmoset genome is activelybeing sequenced, the primate-specific conservation analysis describedhere can be applied in the near future on a whole-genome scale, tocomplement the annotation provided by more distant speciescomparisons.

  3. The vomeronasal complex of nocturnal strepsirhines and implications for the ancestral condition in primates.

    Science.gov (United States)

    Garrett, Eva C; Dennis, John C; Bhatnagar, Kunwar P; Durham, Emily L; Burrows, Anne M; Bonar, Christopher J; Steckler, Natalie K; Morrison, Edward E; Smith, Timothy D

    2013-12-01

    This study investigates the vomeronasal organ in extant nocturnal strepsirhines as a model for ancestral primates. Cadaveric samples from 10 strepsirhine species, ranging from fetal to adult ages, were studied histologically. Dimensions of structures in the vomeronasal complex, such as the vomeronasal neuroepithelium (VNNE) and vomeronasal cartilage (VNC) were measured in serial sections and selected specimens were studied immunohistochemically to determine physiological aspects of the vomeronasal sensory neurons (VSNs). Osteological features corresponding to vomeronasal structures were studied histologically and related to 3-D CT reconstructions. The VNC consistently rests in a depression on the palatal portion of the maxilla, which we refer to as the vomeronasal groove (VNG). Most age comparisons indicate that in adults VNNE is about twice the length compared with perinatal animals. In VNNE volume, adults are 2- to 3-fold larger compared with perinatal specimens. Across ages, a strong linear relationship exists between VNNE dimensions and body length, mass, and midfacial length. Results indicate that the VNNE of nocturnal strepsirhines is neurogenic postnatally based on GAP43 expression. In addition, based on Olfactory Marker Protein expression, terminally differentiated VSNs are present in the VNNE. Therefore, nocturnal strepsirhines have basic similarities to rodents in growth and maturational characteristics of VSNs. These results indicate that a functional vomeronasal system is likely present in all nocturnal strepsirhines. Finally, given that osteological features such as the VNG are visible on midfacial bones, primate fossils can be assessed to determine whether primate ancestors possessed a vomeronasal complex morphologically similar to that of modern nocturnal strepsirhines. PMID:24249398

  4. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral “Salicoid” Genome Duplication

    Science.gov (United States)

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-01-01

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the “salicoid” duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants. PMID:27352946

  5. A PCA-based method for ancestral informative markers selection in structured populations

    Institute of Scientific and Technical Information of China (English)

    ZHANG Feng; ZHANG Lei; DENG Hong-Wen

    2009-01-01

    Identification of population structure can help trace population histories and identify disease genes.Structured association (SA) is a commonly used approach for population structure identification and association mapping. A major issue with SA is that its performance greatly depends on the informativeness and the numbers of ancestral informative markers (AIMs). Present major AIM selection methods mostly require prior individual ancestry information, which is usually not available or uncertain in practice. To address this potential weakness, we herein develop a novel approach for AIM selection based on principle component analysis (PCA), which does not require prior ancestry information of study subjects. Our simulation and real genetic data analysis results suggest that, with equivalent AIMs,PCA-based selected AIMs can significantly increase the accuracy of inferred individual ancestries compared with traditionally randomly selected AIMs. Our method can easily be applied to whole genome data to select a set of highly informative AIMs in population structure, which can then be used to identify potential population structure and correct possible statistical biases caused by population stratification.

  6. The hypothetical ancestral animal. the Urmetazoa: telomerase activity in sponges (Porifera

    Directory of Open Access Journals (Sweden)

    ISABEL M. MÜLLER

    2003-05-01

    Full Text Available Sponges (Porifera represent the lowest metazoan phylum, characterized by a pronounced plasticity in the determination of cell lineages, and they are the closest related taxon to the hypothetical ancestral animal, the Urmetazoa, from which the metazoan lineages diverged. In a first approach to elucidate the molecular mechanisms controlling the switch from the cell lineage with a putative indefinite growth capacity to senescent, somatic cells, the activity of the telomerase as an indicator for immortality has been determined. The studies were performed with the marine demosponges Suberites domuncula and Geodia cydonium, in vivo with tissue but also in vitro using the primmorph system. Primmorphs are formed from dissociated cells which have retained their proliferation potency. It was found that the activity of telomerase in tissue of both sponges is high. Based on this and additional findings it is assumed that the separation of the senescent sponge cell lineage from the immortal germ-/somatic cell lineage is triggered by the loss of contact to cell adhesion factors. First evidence is included which suggests that the final progress of the senescent, telomerase-negative cells to cell death is caused by apoptosis.

  7. Evolutionary Psychology: How Psychological Mechanisms Shaped by Natural Selection for Ancestral Environments Produce Current Behaviours

    Institute of Scientific and Technical Information of China (English)

    Charles Crawford

    2009-01-01

    The central purpose of this paper is to explain how Darwin's theory of evolution by natural selection can be used in understanding current human behaviour. First, Darwin's logic is briefly described. Development is an important issue when applying evolutionary theory to human behaviour. The notion of innate developmental orga-nization of psychological mechanisms is introduced. The possible social and political outcomes produced when differ-ent levels of innate developmental organization are paired with different beliefs about it are considered. The notion of psychological mechanisms as evolved adaptations is considered in some detail. Then I discuss different ways evo-htionists think about how genes are involved in the development of adaptations. The paper concludes with a frame-work for considering how ancestral adaptations function in current environments and outlines some ways of studying them. In China and many other parts of the world people desire a more harmonious society. Ⅰ hope that this paper will be of some small help in achieving this great task.

  8. A PCA-based method for ancestral informative markers selection in structured populations

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Identification of population structure can help trace population histories and identify disease genes. Structured association (SA) is a commonly used approach for population structure identification and association mapping. A major issue with SA is that its performance greatly depends on the informa-tiveness and the numbers of ancestral informative markers (AIMs). Present major AIM selection meth-ods mostly require prior individual ancestry information, which is usually not available or uncertain in practice. To address this potential weakness, we herein develop a novel approach for AIM selection based on principle component analysis (PCA), which does not require prior ancestry information of study subjects. Our simulation and real genetic data analysis results suggest that, with equivalent AIMs, PCA-based selected AIMs can significantly increase the accuracy of inferred individual ancestries compared with traditionally randomly selected AIMs. Our method can easily be applied to whole genome data to select a set of highly informative AIMs in population structure, which can then be used to identify potential population structure and correct possible statistical biases caused by population stratification.

  9. Inheritance of the 8.1 ancestral haplotype in recurrent pregnancy loss

    DEFF Research Database (Denmark)

    Kolte, Astrid M; Nielsen, Henriette S; Steffensen, Rudi;

    2015-01-01

    BACKGROUND AND OBJECTIVES: The 8.1 ancestral haplotype (AH) (HLA-A1, C7, B8, C4AQ0, C4B1, DR3, DQ2) is a remarkably long and conserved haplotype in the human major histocompatibility complex. It has been associated with both beneficial and detrimental effects, consistent with antagonistic....... The objective was to test the gestational drive theory for the 8.1AH in women with RPL and their live born children. METHODOLOGY: We investigated the inheritance of the 8.1AH from 82 heterozygous RPL women to 110 live born children. All participants were genotyped for HLA-A, -B and -DRB1 in DNA from...... EDTA-treated blood or buccal swaps. Inheritance was compared with a Mendelian inheritance of 50% using a two-sided exact binomial test. RESULTS: We found that 55% of the live born children had inherited the 8.1AH, which was not significantly higher than the expected 50% (P = 0.29). Interestingly, we...

  10. Obesity and Native Hawaiians/Pacific Islanders

    Science.gov (United States)

    ... Population Profiles > Native Hawaiian/Other Pacific Islander > Obesity Obesity and Native Hawaiians/Pacific Islanders Native Hawaiians/Pacific ... youthonline . [Accessed 05/25/2016] HEALTH IMPACT OF OBESITY More than 80 percent of people with type ...

  11. Asthma and Native Hawaiians/Pacific Islanders

    Science.gov (United States)

    ... Population Profiles > Native Hawaiian/Other Pacific Islander > Asthma Asthma and Native Hawaiians/Pacific Islanders Native Hawaiians/Pacific Islanders are 70 percent more likely to have asthma as non-Hispanic whites. National data for this ...

  12. Pacific Northwest: paradise lost

    Energy Technology Data Exchange (ETDEWEB)

    Thomas, W.V.

    1980-04-18

    An influx of new residents to the Pacific Northwest is changing social patterns and is endangering the region's valued wilderness and resources. A growing population and a feeling that the national govenment is more exploitive than conserving of its resources combines with a political tension between progressive populism and conservative Mormon influences to make residents wary of either newcomers or new prosperity. The abundant hydro power is threatened as power demand increases and utilities, industries, and the state and local governments compete for their fair share. A plan to restructure the Bonneville Power Administration (BPA) has been introduced in Congress to give it a single appointed administrator with the authority to decide how power will be distributed and which new power sources to develop. Concern about the two national nuclear waste repositories at Hanford and Idaho Falls led to a six-month moratorium at Hanford to warn the government that the site was not intended to be a permanent solution. A legislative proposal to set up regional nuclear parks will not relieve the Pacific Northwest's problems for some time. Leaders blame the policymakers for looking on the area as too remote and underpopulated to worry about. 18 references (DCK)

  13. The North Pacific Gyre Mode

    Science.gov (United States)

    Schneider, N.; di Lorenzo, E.

    2007-12-01

    Discussion of North Pacific Decadal decadal variability has focused primarily on the Pacific Decadal Oscillation, the leading mode of sea surface temperature anomalies north of the tropics. The PDO appears to result from a superposition of SST pattern forced by the North Pacific atmosphere due to its intrinsic dynamics and teleconnected from the tropics, with a regional impact of the ocean circulation in the frontal regions associated with the Kuroshio/Oyashio and their extensions into the interior. Recent modeling, however, suggest that previously unexplained decadal changes of salinity, nutrient upwelling and chlorophyl in the California Current are not dominated by the PDO. Rather, these are associated with a mode of variability associated with wind driven changes of the North Pacific Gyre. Consideration of this mode variability may thus be important to understand present and future variations of the North Pacific ecosystem, and in the interpretation of climate proxies.

  14. The Crystal Structure of Aq_328 from the Hyperthermophilic Bacteria Aquifex aeolicus Shows an Ancestral Histone Fold

    OpenAIRE

    Qiu, Yang; Tereshko, Valentina; Kim, Youngchang; Zhang, Rongguang; Collart, Frank; Yousef, Mohammed; Kossiakoff, Anthony; Joachimiak, Andrzej

    2006-01-01

    The structure of Aq_328, an uncharacterized protein from hyperthermophilic bacteria Aquifex aeolicus, has been determined to 1.9 Å by using multi-wavelength anomalous diffraction (MAD) phasing. Although the amino acid sequence analysis shows that Aq_328 has no significant similarity to proteins with a known structure and function, the structure comparison by using the Dali server reveals that it: (1) assumes a histone-like fold, and (2) is similar to an ancestral nuclear histone protein (PDB ...

  15. Genotype-based ancestral background consistently predicts efficacy and side effects across treatments in CATIE and STAR*D.

    Directory of Open Access Journals (Sweden)

    Daniel E Adkins

    Full Text Available Only a subset of patients will typically respond to any given prescribed drug. The time it takes clinicians to declare a treatment ineffective leaves the patient in an impaired state and at unnecessary risk for adverse drug effects. Thus, diagnostic tests robustly predicting the most effective and safe medication for each patient prior to starting pharmacotherapy would have tremendous clinical value. In this article, we evaluated the use of genetic markers to estimate ancestry as a predictive component of such diagnostic tests. We first estimated each patient's unique mosaic of ancestral backgrounds using genome-wide SNP data collected in the Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE (n = 765 and the Sequenced Treatment Alternatives to Relieve Depression (STAR*D (n = 1892. Next, we performed multiple regression analyses to estimate the predictive power of these ancestral dimensions. For 136/89 treatment-outcome combinations tested in CATIE/STAR*D, results indicated 1.67/1.84 times higher median test statistics than expected under the null hypothesis assuming no predictive power (p<0.01, both samples. Thus, ancestry showed robust and pervasive correlations with drug efficacy and side effects in both CATIE and STAR*D. Comparison of the marginal predictive power of MDS ancestral dimensions and self-reported race indicated significant improvements to model fit with the inclusion of MDS dimensions, but mixed evidence for self-reported race. Knowledge of each patient's unique mosaic of ancestral backgrounds provides a potent immediate starting point for developing algorithms identifying the most effective and safe medication for a wide variety of drug-treatment response combinations. As relatively few new psychiatric drugs are currently under development, such personalized medicine offers a promising approach toward optimizing pharmacotherapy for psychiatric conditions.

  16. Genetic evidence for the ancestral loss of short-wavelength-sensitive cone pigments in mysticete and odontocete cetaceans.

    OpenAIRE

    Levenson, D H; Dizon, A

    2003-01-01

    All mammals ancestrally possessed two types of cone pigments, an arrangement that persists in nearly all contemporary species. However, the absence of one of these cone types, the short-wavelength-sensitive (SWS) cone, has recently been established in several delphinoid cetacean species, indicating that the loss of this pigment type may be widespread among cetaceans. To evaluate the functional condition of SWS cones in cetaceans, partial SWS cone-opsin gene sequences were obtained from nuclea...

  17. Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals

    Directory of Open Access Journals (Sweden)

    Keightley Peter D

    2008-09-01

    Full Text Available Abstract Background Molecular evolutionary studies in mammals often estimate nucleotide substitution rates within and outside CpG dinucleotides separately. Frequently, in alignments of two sequences, the division of sites into CpG and non-CpG classes is based simply on the presence or absence of a CpG dinucleotide in either sequence, a procedure that we refer to as CpG/non-CpG assignment. Although it likely that this procedure is biased, it is generally assumed that the bias is negligible if species are very closely related. Results Using simulations of DNA sequence evolution we show that assignment of the ancestral CpG state based on the simple presence/absence of the CpG dinucleotide can seriously bias estimates of the substitution rate, because many true non-CpG changes are misassigned as CpG. Paradoxically, this bias is most severe between closely related species, because a minimum of two substitutions are required to misassign a true ancestral CpG site as non-CpG whereas only a single substitution is required to misassign a true ancestral non-CpG site as CpG in a two branch tree. We also show that CpG misassignment bias differentially affects fourfold degenerate and noncoding sites due to differences in base composition such that fourfold degenerate sites can appear to be evolving more slowly than noncoding sites. We demonstrate that the effects predicted by our simulations occur in a real evolutionary setting by comparing substitution rates estimated from human-chimp coding and intronic sequence using CpG/non-CpG assignment with estimates derived from a method that is largely free from bias. Conclusion Our study demonstrates that a common method of assigning sites into CpG and non CpG classes in pairwise alignments is seriously biased and recommends against the adoption of ad hoc methods of ancestral state assignment.

  18. Impacts of Plant-Based Foods in Ancestral Hominin Diets on the Metabolism and Function of Gut Microbiota In Vitro

    OpenAIRE

    Gary S Frost; Walton, Gemma E; Jonathan R Swann; Psichas, Arianna; Costabile, Adele; Johnson, Laura P.; Sponheimer, Matt; Glenn R Gibson; Barraclough, Timothy G.

    2014-01-01

    ABSTRACT Ancestral human populations had diets containing more indigestible plant material than present-day diets in industrialized countries. One hypothesis for the rise in prevalence of obesity is that physiological mechanisms for controlling appetite evolved to match a diet with plant fiber content higher than that of present-day diets. We investigated how diet affects gut microbiota and colon cells by comparing human microbial communities with those from a primate that has an extreme plan...

  19. Impacts of plant-based foods in ancestral hominin diets on the metabolism and function of gut microbiota in vitro

    OpenAIRE

    Gary S Frost; Gemma E Walton; Swann, Jonathan R.; Psichas, Arianna; Costabile, Adele; Laura P. Johnson; Sponheimer, Matt; Glenn R Gibson; Barraclough, Timothy G.

    2014-01-01

    Ancestral human populations had diets containing more indigestible plant material than present-day diets in industrialized countries. One hypothesis for the rise in prevalence of obesity is that physiological mechanisms for controlling appetite evolved to match a diet with plant fiber content higher than that of present-day diets. We investigated how diet affects gut microbiota and colon cells by comparing human microbial communities with those from a primate that has an extreme plant-based d...

  20. Palaeoenvironmental and geochemical approach of Archaeocyath-rich facies from Lower Cambrian of Western Gondwana margin at Central Iberian Zone (Urda, Toledo Mountains, Spain)

    Science.gov (United States)

    Menéndez, Silvia; Rodríguez-Martínez, Marta; Moreno-Eris, Elena; Perejón, Antonio; Reitner, Joachim

    2010-05-01

    in Western Gondwana margin. Powdered microsamples have been analysed for their elemental and isotopic composition (δ13C values range from + 0.41 to + 3.05). Sulphur minerals and silicates where analyzed with XRD and wavelength-dispersive electron microprobe. Major elements were measured with ICP-OES and minor and trace elements were analyzed with ICP-MS. These are the first palaeontological, sedimetological, geochemical and isotopical data provided to reconstruct the depositional environment of these Archaeocyath-rich facies at the Western Gondwana margin. References Julivert, M., Fontboté, J.M., Ribeiro, A., Nabais Conde L.E. 1972. Mapa tectónico de la Península Ibérica y Baleares, Escala 1: 1.000.000, Memoria Explicativa [1974], 113 pp. Instituto Geológico y Minero de España. Perejón, A., Moreno-Eiris, E. 2006. Biostratigraphy and palaeobiography of the archaeocyaths on the south-western margin of Gondwana. Zeitschrift der Deutschen Gesellschaft für Geowissenschaften 157 (4): 611-627.

  1. Are Hox genes ancestrally involved in axial patterning? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria.

    Directory of Open Access Journals (Sweden)

    Roxane Chiori

    Full Text Available BACKGROUND: The early evolution and diversification of Hox-related genes in eumetazoans has been the subject of conflicting hypotheses concerning the evolutionary conservation of their role in axial patterning and the pre-bilaterian origin of the Hox and ParaHox clusters. The diversification of Hox/ParaHox genes clearly predates the origin of bilaterians. However, the existence of a "Hox code" predating the cnidarian-bilaterian ancestor and supporting the deep homology of axes is more controversial. This assumption was mainly based on the interpretation of Hox expression data from the sea anemone, but growing evidence from other cnidarian taxa puts into question this hypothesis. METHODOLOGY/PRINCIPAL FINDINGS: Hox, ParaHox and Hox-related genes have been investigated here by phylogenetic analysis and in situ hybridisation in Clytia hemisphaerica, an hydrozoan species with medusa and polyp stages alternating in the life cycle. Our phylogenetic analyses do not support an origin of ParaHox and Hox genes by duplication of an ancestral ProtoHox cluster, and reveal a diversification of the cnidarian HOX9-14 genes into three groups called A, B, C. Among the 7 examined genes, only those belonging to the HOX9-14 and the CDX groups exhibit a restricted expression along the oral-aboral axis during development and in the planula larva, while the others are expressed in very specialised areas at the medusa stage. CONCLUSIONS/SIGNIFICANCE: Cross species comparison reveals a strong variability of gene expression along the oral-aboral axis and during the life cycle among cnidarian lineages. The most parsimonious interpretation is that the Hox code, collinearity and conservative role along the antero-posterior axis are bilaterian innovations.

  2. Allelic lineages of the ficolin genes (FCNs are passed from ancestral to descendant primates.

    Directory of Open Access Journals (Sweden)

    Tina Hummelshøj

    Full Text Available The ficolins recognize carbohydrates and acetylated compounds on microorganisms and dying host cells and are able to activate the lectin pathway of the complement system. In humans, three ficolin genes have been identified: FCN1, FCN2 and FCN3, which encode ficolin-1, ficolin-2 and ficolin-3, respectively. Rodents have only two ficolins designated ficolin-A and ficolin-B that are closely related to human ficolin-1, while the rodent FCN3 orthologue is a pseudogene. Ficolin-2 and ficolin-3 have so far only been observed in humans. Thus, we performed a systematic investigation of the FCN genes in non-human primates. The exons and intron-exon boundaries of the FCN1-3 genes were sequenced in the following primate species: chimpanzee, gorilla, orangutan, rhesus macaque, cynomolgus macaque, baboon and common marmoset. We found that the exon organisation of the FCN genes was very similar between all the non-human primates and the human FCN genes. Several variations in the FCN genes were found in more than one primate specie suggesting that they were carried from one species to another including humans. The amino acid diversity of the ficolins among human and non-human primate species was estimated by calculating the Shannon entropy revealing that all three proteins are generally highly conserved. Ficolin-1 and ficolin-2 showed the highest diversity, whereas ficolin-3 was more conserved. Ficolin-2 and ficolin-3 were present in non-human primate sera with the same characteristic oligomeric structures as seen in human serum. Taken together all the FCN genes show the same characteristics in lower and higher primates. The existence of trans-species polymorphisms suggests that different FCN allelic lineages may be passed from ancestral to descendant species.

  3. Placental expression of pituitary hormones is an ancestral feature of therian mammals

    Directory of Open Access Journals (Sweden)

    Menzies Brandon R

    2011-08-01

    Full Text Available Abstract Background The placenta is essential for supplying nutrients and gases to the developing mammalian young before birth. While all mammals have a functional placenta, only in therian mammals (marsupials and eutherians does the placenta closely appose or invade the uterine endometrium. The eutherian placenta secretes hormones that are structurally and functionally similar to pituitary growth hormone (GH, prolactin (PRL and luteinizing hormone (LH. Marsupial and eutherian mammals diverged from a common ancestor approximately 125 to 148 million years ago and developed distinct reproductive strategies. As in eutherians, marsupials rely on a short-lived but functional placenta for embryogenesis. Results We characterized pituitary GH, GH-R, IGF-2, PRL and LHβ in a macropodid marsupial, the tammar wallaby, Macropus eugenii. These genes were expressed in the tammar placenta during the last third of gestation when most fetal growth occurs and active organogenesis is initiated. The mRNA of key growth genes GH, GH-R, IGF-2 and PRL were expressed during late pregnancy. We found significant up-regulation of GH, GH-R and IGF-2 after the start of the rapid growth phase of organogenesis which suggests that the placental growth hormones regulate the rapid phase of fetal growth. Conclusions This is the first demonstration of the existence of pituitary hormones in the marsupial placenta. Placental expression of these pituitary hormones has clearly been conserved in marsupials as in eutherian mammals, suggesting an ancestral origin of the evolution of placental expression and a critical function of these hormones in growth and development of all therian mammals.

  4. An Ancestral Role for CONSTITUTIVE TRIPLE RESPONSE1 Proteins in Both Ethylene and Abscisic Acid Signaling.

    Science.gov (United States)

    Yasumura, Yuki; Pierik, Ronald; Kelly, Steven; Sakuta, Masaaki; Voesenek, Laurentius A C J; Harberd, Nicholas P

    2015-09-01

    Land plants have evolved adaptive regulatory mechanisms enabling the survival of environmental stresses associated with terrestrial life. Here, we focus on the evolution of the regulatory CONSTITUTIVE TRIPLE RESPONSE1 (CTR1) component of the ethylene signaling pathway that modulates stress-related changes in plant growth and development. First, we compare CTR1-like proteins from a bryophyte, Physcomitrella patens (representative of early divergent land plants), with those of more recently diverged lycophyte and angiosperm species (including Arabidopsis [Arabidopsis thaliana]) and identify a monophyletic CTR1 family. The fully sequenced P. patens genome encodes only a single member of this family (PpCTR1L). Next, we compare the functions of PpCTR1L with that of related angiosperm proteins. We show that, like angiosperm CTR1 proteins (e.g. AtCTR1 of Arabidopsis), PpCTR1L modulates downstream ethylene signaling via direct interaction with ethylene receptors. These functions, therefore, likely predate the divergence of the bryophytes from the land-plant lineage. However, we also show that PpCTR1L unexpectedly has dual functions and additionally modulates abscisic acid (ABA) signaling. In contrast, while AtCTR1 lacks detectable ABA signaling functions, Arabidopsis has during evolution acquired another homolog that is functionally distinct from AtCTR1. In conclusion, the roles of CTR1-related proteins appear to have functionally diversified during land-plant evolution, and angiosperm CTR1-related proteins appear to have lost an ancestral ABA signaling function. Our study provides new insights into how molecular events such as gene duplication and functional differentiation may have contributed to the adaptive evolution of regulatory mechanisms in plants. PMID:26243614

  5. Identification of the ancestral killer immunoglobulin-like receptor gene in primates

    Directory of Open Access Journals (Sweden)

    Coggill Penny

    2006-08-01

    Full Text Available Abstract Background Killer Immunoglobulin-like Receptors (KIR are essential immuno-surveillance molecules. They are expressed on natural killer and T cells, and interact with human leukocyte antigens. KIR genes are highly polymorphic and contribute vital variability to our immune system. Numerous KIR genes, belonging to five distinct lineages, have been identified in all primates examined thus far and shown to be rapidly evolving. Since few KIR remain orthologous between species, with only one of them, KIR2DL4, shown to be common to human, apes and monkeys, the evolution of the KIR gene family in primates remains unclear. Results Using comparative analyses, we have identified the ancestral KIR lineage (provisionally named KIR3DL0 in primates. We show KIR3DL0 to be highly conserved with the identification of orthologues in human (Homo sapiens, common chimpanzee (Pan troglodytes, gorilla (Gorilla gorilla, rhesus monkey (Macaca mulatta and common marmoset (Callithrix jacchus. We predict KIR3DL0 to encode a functional molecule in all primates by demonstrating expression in human, chimpanzee and rhesus monkey. Using the rhesus monkey as a model, we further show the expression profile to be typical of KIR by quantitative measurement of KIR3DL0 from an enriched population of natural killer cells. Conclusion One reason why KIR3DL0 may have escaped discovery for so long is that, in human, it maps in between two related leukocyte immunoglobulin-like receptor clusters outside the known KIR gene cluster on Chromosome 19. Based on genomic, cDNA, expression and phylogenetic data, we report a novel lineage of immunoglobulin receptors belonging to the KIR family, which is highly conserved throughout 50 million years of primate evolution.

  6. The ancestral activation promiscuity of ADP-glucose pyrophosphorylases from oxygenic photosynthetic organisms

    Directory of Open Access Journals (Sweden)

    Kuhn Misty L

    2013-02-01

    Full Text Available Abstract Background ADP-glucose pyrophosphorylase (ADP-Glc PPase catalyzes the first committed step in the synthesis of glycogen in bacteria and starch in algae and plants. In oxygenic photosynthetic organisms, ADP-Glc PPase is mainly activated by 3-phosphoglycerate (3-PGA and to a lesser extent by other metabolites. In this work, we analyzed the activation promiscuity of ADP-Glc PPase subunits from the cyanobacterium Anabaena PCC 7120, the green alga Ostreococcus tauri, and potato (Solanum tuberosum tuber by comparing a specificity constant for 3-PGA, fructose-1,6-bisphosphate (FBP, fructose-6-phosphate, and glucose-6-phosphate. Results The 3-PGA specificity constant for the enzymes from Anabaena (homotetramer, O. tauri, and potato tuber was considerably higher than for other activators. O. tauri and potato tuber enzymes were heterotetramers comprising homologous small and large subunits. Conversely, the O. tauri small subunit (OtaS homotetramer was more promiscuous because its FBP specificity constant was similar to that for 3-PGA. To explore the role of both OtaS and OtaL (O. tauri large subunit in determining the specificity of the heterotetramer, we knocked out the catalytic activity of each subunit individually by site-directed mutagenesis. Interestingly, the mutants OtaSD148A/OtaL and OtaS/OtaLD171A had higher specificity constants for 3-PGA than for FBP. Conclusions After gene duplication, OtaS seemed to have lost specificity for 3-PGA compared to FBP. This was physiologically and evolutionarily feasible because co-expression of both subunits restored the specificity for 3-PGA of the resulting heterotetrameric wild type enzyme. This widespread promiscuity seems to be ancestral and intrinsic to the enzyme family. Its presence could constitute an efficient evolutionary mechanism to accommodate the ADP-Glc PPase regulation to different metabolic needs.

  7. Toxic and nontoxic components of botulinum neurotoxin complex are evolved from a common ancestral zinc protein

    Energy Technology Data Exchange (ETDEWEB)

    Inui, Ken [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo 102-8472 (Japan); Sagane, Yoshimasa [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Miyata, Keita [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo 102-8472 (Japan); Miyashita, Shin-Ichiro [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Suzuki, Tomonori [Department of Bacteriology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 2-5-1 Shikata-cho, Kita-ku, Okayama 700-8558 (Japan); Shikamori, Yasuyuki [Agilent Technologies International Japan, Ltd. Takaura-cho 9-1, Hachioji-shi, Tokyo 192-0033 (Japan); Ohyama, Tohru; Niwa, Koichi [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Watanabe, Toshihiro, E-mail: t-watana@bioindustry.nodai.ac.jp [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan)

    2012-03-16

    Highlights: Black-Right-Pointing-Pointer BoNT and NTNHA proteins share a similar protein architecture. Black-Right-Pointing-Pointer NTNHA and BoNT were both identified as zinc-binding proteins. Black-Right-Pointing-Pointer NTNHA does not have a classical HEXXH zinc-coordinating motif similar to that found in all serotypes of BoNT. Black-Right-Pointing-Pointer Homology modeling implied probable key residues involved in zinc coordination. -- Abstract: Zinc atoms play an essential role in a number of enzymes. Botulinum neurotoxin (BoNT), the most potent toxin known in nature, is a zinc-dependent endopeptidase. Here we identify the nontoxic nonhemagglutinin (NTNHA), one of the BoNT-complex constituents, as a zinc-binding protein, along with BoNT. A protein structure classification database search indicated that BoNT and NTNHA share a similar domain architecture, comprising a zinc-dependent metalloproteinase-like, BoNT coiled-coil motif and concanavalin A-like domains. Inductively coupled plasma-mass spectrometry analysis demonstrated that every single NTNHA molecule contains a single zinc atom. This is the first demonstration of a zinc atom in this protein, as far as we know. However, the NTNHA molecule does not possess any known zinc-coordinating motif, whereas all BoNT serotypes possess the classical HEXXH motif. Homology modeling of the NTNHA structure implied that a consensus K-C-L-I-K-X{sub 35}-D sequence common among all NTNHA serotype molecules appears to coordinate a single zinc atom. These findings lead us to propose that NTNHA and BoNT may have evolved distinct functional specializations following their branching out from a common ancestral zinc protein.

  8. Toxic and nontoxic components of botulinum neurotoxin complex are evolved from a common ancestral zinc protein

    International Nuclear Information System (INIS)

    Highlights: ► BoNT and NTNHA proteins share a similar protein architecture. ► NTNHA and BoNT were both identified as zinc-binding proteins. ► NTNHA does not have a classical HEXXH zinc-coordinating motif similar to that found in all serotypes of BoNT. ► Homology modeling implied probable key residues involved in zinc coordination. -- Abstract: Zinc atoms play an essential role in a number of enzymes. Botulinum neurotoxin (BoNT), the most potent toxin known in nature, is a zinc-dependent endopeptidase. Here we identify the nontoxic nonhemagglutinin (NTNHA), one of the BoNT-complex constituents, as a zinc-binding protein, along with BoNT. A protein structure classification database search indicated that BoNT and NTNHA share a similar domain architecture, comprising a zinc-dependent metalloproteinase-like, BoNT coiled-coil motif and concanavalin A-like domains. Inductively coupled plasma-mass spectrometry analysis demonstrated that every single NTNHA molecule contains a single zinc atom. This is the first demonstration of a zinc atom in this protein, as far as we know. However, the NTNHA molecule does not possess any known zinc-coordinating motif, whereas all BoNT serotypes possess the classical HEXXH motif. Homology modeling of the NTNHA structure implied that a consensus K-C-L-I-K-X35-D sequence common among all NTNHA serotype molecules appears to coordinate a single zinc atom. These findings lead us to propose that NTNHA and BoNT may have evolved distinct functional specializations following their branching out from a common ancestral zinc protein.

  9. Paraphyly of organelle DNAs in Cycas Sect. Asiorientales due to ancient ancestral polymorphisms

    Directory of Open Access Journals (Sweden)

    Hsu Tsai-Wen

    2009-07-01

    Full Text Available Abstract Background This study addresses the apportionment of genetic diversity between Cycas revoluta and C. taitungensis, species that constitute the section Asiorientales and represent a unique, basal lineage of the Laurasian genus Cycas. Fossil evidence indicates divergence of the section from the rest of Cycas at least 30 million years ago. Geographically, C. taitungensis is limited to Taiwan whereas C. revoluta is found in the Ryukyu Archipelago and on mainland China. Results The phylogenies of ribosomal ITS region of mtDNA and the intergenic spacer between atpB and rbcL genes of cpDNA were reconstructed. Phylogenetic analyses revealed paraphyly of both loci in the two species and also in the section Asiorientales. The lack of reciprocal monophyly between these long isolated sections is likely due to persistent shared ancestral polymorphisms. Molecular dating estimated that mt- and cp DNA lineages coalesced to the most recent common ancestors (TMRCA about 327 (mt and 204 MYA (cp, corresponding with the divergence of cycad sections in the Mesozoic. Conclusion Fates of newly derived mutations of cycads follow Klopfstein et al.'s surfing model where the majority of new mutations do not spread geographically and remain at low frequencies or are eventually lost by genetic drift. Only successful 'surfing mutations' reach very high frequencies and occupy a large portion of a species range. These mutations exist as dominant cytotypes across populations and species. Geographical subdivision is lacking in both species, even though recurrent gene flow by both pollen and seed is severely limited. In total, the contrasting levels between historical and ongoing gene flow, large population sizes, a long lifespan, and slow mutation rates in both organelle DNAs have all likely contributed to the unusually long duration of paraphyly in cycads.

  10. Composition and evolution of the Ancestral South Sandwich Arc: Implications for the flow of deep ocean water and mantle through the Drake Passage Gateway

    Science.gov (United States)

    Pearce, J. A.; Hastie, A. R.; Leat, P. T.; Dalziel, I. W.; Lawver, L. A.; Barker, P. F.; Millar, I. L.; Barry, T. L.; Bevins, R. E.

    2014-12-01

    The Ancestral South Sandwich Arc (ASSA) has a short life-span of c. 20 m.y. (early Oligocene to middle-late Miocene) before slab retreat and subsequent 'resurrection' as the active South Sandwich Island Arc (SSIA). The ASSA is, however, significant because it straddled the eastern margin of the Drake Passage Gateway where it formed a potential barrier to deep ocean water and mantle flow from the Pacific to Atlantic. The ASSA may be divided into three parts, from north to south: the Central Scotia Sea (CSS), the Discovery segment, and the Jane segment. Published age data coupled with new geochemical data (major elements, trace elements, Hf-Nd-Sr-Pb isotopes) from the three ASSA segments place constraints on models for the evolution of the arc and hence gateway development. The CSS segment has two known periods of activity. The older, Oligocene, period produced basic-acidic, mostly calc-alkaline rocks, best explained in terms of subduction initiation volcanism of Andean-type (no slab rollback). The younger, middle-late Miocene period produced basic-acidic, high-K calc-alkaline rocks (lavas and pyroclastic rocks with abundant volcanigenic sediments) which, despite being erupted on oceanic crust, have continental arc characteristics best explained in terms of a large, hot subduction flux most typical of a syn- or post-collision arc setting. Early-middle Miocene volcanism in the Discovery and Jane arc segments is geochemically quite different, being typically tholeiitic and compositionally similar to many lavas from the active South Sandwich Island Arc front. There is indirect evidence for Western Pacific-type (slab rollback) subduction initiation in the southern part of the ASSA and for the back-arc basins (the Jane and Scan Basins) to have been active at the time of arc volcanism. Models for the death of the ASSA in the south following a series of ridge-trench collisions are not positively supported by any geochemical evidence of hot subduction, but cessation of

  11. Rafid Keramane, La Pacification

    OpenAIRE

    Monciaud, Didier

    2014-01-01

    Publié en février 1960 en Suisse, ce livre est interdit dès sa sortie en France. En effet, il aborde la gestion française de la guerre en Algérie et montre l’ampleur de la violence avec tortures, exécutions sommaires, incendies de villages et déplacements de population… Ce que la France « officielle » nomme du cynique euphémisme de « pacification » signifie en fait le recours à un vaste répertoire de moyens répressifs contre les militants et combattants algériens, la population civile, sans o...

  12. Petrogenesis of the Early Cretaceous Laguila bimodal intrusive rocks from the Tethyan Himalaya: Implications for the break-up of Eastern Gondwana

    Science.gov (United States)

    Liu, Zheng; Zhou, Qing; Lai, Yang; Qing, Chengshi; Li, Yingxu; Wu, Jianyang; Xia, Xiangbiao

    2015-11-01

    The Kerguelen mantle plume triggered the rift of Eastern Gondwana to open the eastern Indian Ocean, with the formation of ~ 132 Ma Comei-Bunbury large igneous province (LIP). The Comei area is located in the eastern Tethyan Himalaya, paleogeographically belonging to Greater India. The Laguila bimodal intrusive rocks from the Comei area consist of mafic (gabbro-diabase) and felsic rocks (quartz monzonite-granodiorite). This paper presents detailed LA-ICP-MS zircon U-Pb chronology, major and trace elements, and Sr-Nd-Pb isotope geochemistry of the Laguila bimodal intrusive rocks, in order to constrain the early activity of the Kerguelen mantle plume. LA-ICP-MS zircon U-Pb dating shows that the Laguila intrusive rocks were emplaced in the Early Cretaceous (~ 134-130 Ma). The Laguila mafic rocks are enriched in LREE, LILE and HFSE, similar to those of oceanic island basalts (OIB). Their 87Sr/86Sri (0.7054 to 0.7066), 143Νd/144Nd (T) (0.512548 to 0.512619) and (206Pb/204Pb)t ratios (18.492 to 18.859) are comparable with those basalts derived by the Kerguelen hot spot. Elemental and isotopic data suggest that they were likely derived by partial melting of the Kerguelen plume source in the spinel-garnet transition zone (~ 60-80 km). The Laguila felsic rocks share most of the geochemical features of A-type granite and show different 87Sr/86Sri (0.7171 to 0.7204), 143Νd/144Nd (T) (0.511874 to 0.511956) and (206Pb/204Pb)t ratios (19.087 to 19.274) from those of the mafic rocks. They were likely derived by partial melting of crustal rocks at a shallow depth ( 150 km) underneath Greater India prevented the Kerguelen plume from large-scale melting because of the high pressure when the latter impinged onto the former at ~ 132 Ma. The shallow source (~ 60-80 km) of the Laguila mafic rocks indicate that they originated likely from a series of "diapirs" or "fingers" rising from the head of the Kerguelen plume, which penetrated into the thick lithospheric mantle of Eastern

  13. 40Ar/ 39Ar dating of the Jurassic volcanic province of Patagonia: migrating magmatism related to Gondwana break-up and subduction

    Science.gov (United States)

    Féraud, G.; Alric, V.; Fornari, M.; Bertrand, H.; Haller, M.

    1999-10-01

    The Mesozoic large igneous province (LIP) of Patagonia (southern South America), which is one of the largest silicic provinces on Earth has been investigated by the 40Ar/ 39Ar method. Twenty-seven ages considered as valid, including twenty plateau ages, show that the volcanic activity, ranging from 187 to 144 Ma, occurred between and contemporaneously with the initial break-up of Gondwana (starting with the Karoo-Antarctic-Tasmanian (KAT) flood basalt province) in the east, and a subduction in the west. The data display a regular decreasing of ages from the ENE (187 Ma) to the WSW (144 Ma) along about 650 km, apparently related to the tectonic structure in half-grabens oriented NNW-SSE. The good fitting of this trend with the opening of the Rocas Verdes-Sarmiento marginal basin favors a space time evolution of this continental volcanism culminating towards the SSW in a continental disruption behind the magmatic arc. The observed age progression of volcanism may be the result of the variations of the physical characteristics of the subduction. The spreading and thermal effect of the KAT plume may have an additional effect and also could account for the unusually large volume of magma.

  14. Late-Proterozoic to Paleozoic history of the peri-Gondwana Calabria-Peloritani Terrane inferred from a review of zircon chronology.

    Science.gov (United States)

    Fornelli, Annamaria; Micheletti, Francesca; Piccarreta, Giuseppe

    2016-01-01

    U-Pb analyses of zircon from ten samples of augen gneisses, eight mafic and intermediate metaigneous rocks and six metasediments from some tectonic domains along the Calabria-Peloritani Terrane (Southern Italy) contribute to knowledge of peri-Gondwanan evolution from Late-Proterozoic to Paleozoic times. All samples were equilibrated under amphibolite to granulite facies metamorphism during the Variscan orogeny. The zircon grains of all considered samples preserve a Proterozoic memory suggestive of detrital, metamorphic and igneous origin. The available data fit a frame involving: (1) Neoproterozoic detrital input from cratonic areas of Gondwana; (2) Pan-African/Cadomian assemblage of blocks derived from East and West African Craton; (3) metamorphism and bimodal magmatism between 535 and 579 Ma, within an active margin setting; (4) rifting and opening of Ordovician basins fed by detrital input from the assembled Cadomian blocks. The Paleozoic basins evolved through sedimentation, metamorphism and magmatism during the Variscan orogeny involving Palaeozoic and pre-Paleozoic blocks. The Proterozoic zircon records decidedly decrease in the high grade metamorphic rocks affected by Variscan pervasive partial melting. PMID:27026906

  15. Western Pacific Typhoon Aircraft Fixes

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Western Pacific typhoon aircraft reconnaissance data from the years 1946 - 1965 and 1978, excluding 1952, were transcribed from original documents, or copy of...

  16. A Common Ancestral Mutation in CRYBB3 Identified in Multiple Consanguineous Families with Congenital Cataracts

    Science.gov (United States)

    Irum, Bushra; Khan, Arif O.; Wang, Qiwei; Li, David; Khan, Asma A.; Husnain, Tayyab; Akram, Javed; Riazuddin, Sheikh

    2016-01-01

    development. Conclusion Here, we report a common ancestral mutation in CRYBB3 associated with autosomal recessive congenital cataracts identified in four familial cases of Pakistani origin. PMID:27326458

  17. Effects of interleukin-10 on cutaneous wounds and scars in humans of African continental ancestral origin.

    Science.gov (United States)

    Kieran, Ingrid; Taylor, Catherine; Bush, Jim; Rance, Mark; So, Karen; Boanas, Adam; Metcalfe, Anthony; Hobson, Rosalind; Goldspink, Nick; Hutchison, John; Ferguson, Mark

    2014-01-01

    Scars in humans of African continental ancestry heal with an exaggerated inflammatory response and a generally wider scar. Interleukin-10 is an anti-inflammatory and antifibrotic cytokine. A randomized controlled trial in Caucasians found that exogenous interleukin-10 resulted in improved macroscopic scar appearance and reduced scar redness. We investigated the effects of interleukin-10 on cutaneous scarring in volunteers of African ancestral origin in an exploratory, single-center, within-subject, double-blind randomized controlled trial. Fifty-six subjects received two of four potential prerandomized concentrations of interleukin-10 (5, 25, 100, and 250 ng/100 µL) in two full-thickness incisions on the upper inner arms. Anatomically matching incisions on the contralateral arm were treated with placebo. Scars were excised at 1 month for histological analysis and were redosed with the same regimen. Resultant excision scars were followed up for 12 months for scar width measurement and scoring. Scoring was performed by trial doctors, subjects, and a panel. Incisions treated with 100 ng/100 µL interleukin-10 had significantly reduced microscopic scar widths. Incisions treated with 5 and 25 ng/100 µL interleukin-10 were also narrower, but not significantly. There were no differences observed in pro-inflammatory or pro-fibrotic markers between interleukin-10 and placebo treatment. There was no long-term evidence that 100 ng/100 µL interleukin-10 had a therapeutic effect on macroscopic scar width or appearance, as excisions treated with this concentration were significantly wider than placebo between 8 and 12 months of maturation. Doctors showed a trend toward favoring the macroscopic appearance of placebo-treated excisions compared with those treated with 250 ng/100 µL interleukin-10. Panelists scored placebo-treated excisions as significantly better-appearing than those treated with 250 ng/100 µL interleukin-10. Doctors' scores showed a

  18. Wave energy: a Pacific perspective.

    Science.gov (United States)

    Paasch, Robert; Ruehl, Kelley; Hovland, Justin; Meicke, Stephen

    2012-01-28

    This paper illustrates the status of wave energy development in Pacific rim countries by characterizing the available resource and introducing the region's current and potential future leaders in wave energy converter development. It also describes the existing licensing and permitting process as well as potential environmental concerns. Capabilities of Pacific Ocean testing facilities are described in addition to the region's vision of the future of wave energy. PMID:22184673

  19. La modernidad, el cuidado de la salud y la cultura ancestral.

    Directory of Open Access Journals (Sweden)

    Ana Cecilia Becerra

    2009-11-01

    Full Text Available La modernidad es tanto un período histórico como un concepto filosófico y sociológico que impuso la razón y el método formal sobre todos los actos políticos, sociales y epistemológicos de las distintas culturas del mundo. La modernidad se construyó en su momento sobre el imaginario de la superioridad europea1 y durante el período colonial fue la causante del proceso avasallador de exterminio y de desconocimiento de las sociedades y culturas indígenas de América. Ella, con sus valores patriarcales y formales, desplazó la ética del cuidado y del abrigo de los pueblos autóctonos imponiendo una lógica racional, calculadora e impersonal. Al desconocer y casi negar en su totalidad la cosmovisión ancestral de curar y cuidar, relegó los ejercicios profesionalizantes de la salud bajo el amparo de la mercantilización del capitalismo mundial integrado. La modernidad, desde el inicio y en la actualidad, ha impregnado la cultura de todos los pueblos y ha condicionado todos los actos académicos en las instituciones escolares y universitarias. La perpetuación de un modelo positivista y occidentalizado ha sido una constante en las aulas universitarias y en las disciplinas, sobre todo en las ciencias de la salud. Históricamente el conocimiento en salud ha sido construido con base en el enfoque positivista y la concepción biologista del proceso salud-enfermedad, lo cual lleva a una fragmentación del saber, disyunción del sujeto y el objeto en la producción del conocimiento, y a una incapacidad de asumir al ser humano en todas sus dimensiones, razón de ser de la acción en salud, como totalidad y unidad integral2. Este panorama aquí planteado deja un gran reto epistemológico a los profesionales y a los docentes de las ciencias de la salud en general y de enfermería en particular. Vista la enfermería desde la fundamentación del cuidado de la salud, no se puede descontextualizar ni escindir de nuestra propia cultura, pretendiendo

  20. La modernidad, el cuidado de la salud y la cultura ancestral

    Directory of Open Access Journals (Sweden)

    Ana Cecilia Becerra

    2008-09-01

    Full Text Available La modernidad es tanto un período histórico como un concepto filosófico y sociológico que impuso la razón y el método formal sobre todos los actos políticos, sociales y epistemológicos de las distintas culturas del mundo. La modernidad se construyó en su momento sobre el imaginario de la superioridad europea1 y durante el período colonial fue la causante del proceso avasallador de exterminio y de desconocimiento de las sociedades y culturas indígenas de América.Ella, con sus valores patriarcales y formales, desplazó la ética del cuidado y del abrigo de los pueblos autóctonos imponiendo una lógica racional, calculadora e impersonal. Al desconocer y casi negar en su totalidad la cosmovisión ancestral de curar y cuidar, relegó los ejercicios profesionalizantes de la salud bajo el amparo de la mercantilización del capitalismo mundial integrado.La modernidad, desde el inicio y en la actualidad, ha impregnado la cultura de todos los pueblos y ha condicionado todos los actos académicos en las instituciones escolares y universitarias. La perpetuación de un modelo positivista y occidentalizado ha sido una constante en las aulas universitarias y en las disciplinas, sobre todo en las ciencias de la salud. Históricamente el conocimiento en salud ha sido construido con base en el enfoque positivista y la concepción biologista del proceso salud-enfermedad, lo cual lleva a una fragmentación del saber, disyunción del sujeto y el objeto en la producción del conocimiento, y a una incapacidad de asumir al ser humano en todas sus dimensiones, razón de ser de la acción en salud, como totalidad y unidad integral2.Este panorama aquí planteado deja un gran reto epistemológico a los profesionales y a los docentes de las ciencias de la salud en general y de enfermería en particular. Vista la enfermería desde la fundamentación del cuidado de la salud, no se puede descontextualizar ni escindir de nuestra propia cultura, pretendiendo

  1. Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors.

    Science.gov (United States)

    Burgess, Ralph; Yang, Ziheng

    2008-09-01

    Estimation of population parameters for the common ancestors of humans and the great apes is important in understanding our evolutionary history. In particular, inference of population size for the human-chimpanzee common ancestor may shed light on the process by which the 2 species separated and on whether the human population experienced a severe size reduction in its early evolutionary history. In this study, the Bayesian method of ancestral inference of Rannala and Yang (2003. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics. 164:1645-1656) was extended to accommodate variable mutation rates among loci and random species-specific sequencing errors. The model was applied to analyze a genome-wide data set of approximately 15,000 neutral loci (7.4 Mb) aligned for human, chimpanzee, gorilla, orangutan, and macaque. We obtained robust and precise estimates for effective population sizes along the hominoid lineage extending back approximately 30 Myr to the cercopithecoid divergence. The results showed that ancestral populations were 5-10 times larger than modern humans along the entire hominoid lineage. The estimates were robust to the priors used and to model assumptions about recombination. The unusually low X chromosome divergence between human and chimpanzee could not be explained by variation in the male mutation bias or by current models of hybridization and introgression. Instead, our parameter estimates were consistent with a simple instantaneous process for human-chimpanzee speciation but showed a major reduction in X chromosome effective population size peculiar to the human-chimpanzee common ancestor, possibly due to selective sweeps on the X prior to separation of the 2 species. PMID:18603620

  2. Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme.

    Directory of Open Access Journals (Sweden)

    Maritrini Colón

    Full Text Available BACKGROUND: Gene duplication is a key evolutionary mechanism providing material for the generation of genes with new or modified functions. The fate of duplicated gene copies has been amply discussed and several models have been put forward to account for duplicate conservation. The specialization model considers that duplication of a bifunctional ancestral gene could result in the preservation of both copies through subfunctionalization, resulting in the distribution of the two ancestral functions between the gene duplicates. Here we investigate whether the presumed bifunctional character displayed by the single branched chain amino acid aminotransferase present in K. lactis has been distributed in the two paralogous genes present in S. cerevisiae, and whether this conservation has impacted S. cerevisiae metabolism. PRINCIPAL FINDINGS: Our results show that the KlBat1 orthologous BCAT is a bifunctional enzyme, which participates in the biosynthesis and catabolism of branched chain aminoacids (BCAAs. This dual role has been distributed in S. cerevisiae Bat1 and Bat2 paralogous proteins, supporting the specialization model posed to explain the evolution of gene duplications. BAT1 is highly expressed under biosynthetic conditions, while BAT2 expression is highest under catabolic conditions. Bat1 and Bat2 differential relocalization has favored their physiological function, since biosynthetic precursors are generated in the mitochondria (Bat1, while catabolic substrates are accumulated in the cytosol (Bat2. Under respiratory conditions, in the presence of ammonium and BCAAs the bat1Δ bat2Δ double mutant shows impaired growth, indicating that Bat1 and Bat2 could play redundant roles. In K. lactis wild type growth is independent of BCAA degradation, since a Klbat1Δ mutant grows under this condition. CONCLUSIONS: Our study shows that BAT1 and BAT2 differential expression and subcellular relocalization has resulted in the distribution of the

  3. Extensive Chromosomal Reorganization in the Evolution of New World Muroid Rodents (Cricetidae, Sigmodontinae): Searching for Ancestral Phylogenetic Traits.

    Science.gov (United States)

    Pereira, Adenilson Leão; Malcher, Stella Miranda; Nagamachi, Cleusa Yoshiko; O'Brien, Patricia Caroline Mary; Ferguson-Smith, Malcolm Andrew; Mendes-Oliveira, Ana Cristina; Pieczarka, Julio Cesar

    2016-01-01

    Sigmodontinae rodents show great diversity and complexity in morphology and ecology. This diversity is accompanied by extensive chromosome variation challenging attempts to reconstruct their ancestral genome. The species Hylaeamys megacephalus--HME (Oryzomyini, 2n = 54), Necromys lasiurus--NLA (Akodontini, 2n = 34) and Akodon sp.--ASP (Akodontini, 2n = 10) have extreme diploid numbers that make it difficult to understand the rearrangements that are responsible for such differences. In this study we analyzed these changes using whole chromosome probes of HME in cross-species painting of NLA and ASP to construct chromosome homology maps that reveal the rearrangements between species. We include data from the literature for other Sigmodontinae previously studied with probes from HME and Mus musculus (MMU) probes. We also use the HME probes on MMU chromosomes for the comparative analysis of NLA with other species already mapped by MMU probes. Our results show that NLA and ASP have highly rearranged karyotypes when compared to HME. Eleven HME syntenic blocks are shared among the species studied here. Four syntenies may be ancestral to Akodontini (HME2/18, 3/25, 18/25 and 4/11/16) and eight to Sigmodontinae (HME26, 1/12, 6/21, 7/9, 5/17, 11/16, 20/13 and 19/14/19). Using MMU data we identified six associations shared among rodents from seven subfamilies, where MMU3/18 and MMU8/13 are phylogenetic signatures of Sigmodontinae. We suggest that the associations MMU2entire, MMU6proximal/12entire, MMU3/18, MMU8/13, MMU1/17, MMU10/17, MMU12/17, MMU5/16, MMU5/6 and MMU7/19 are part of the ancestral Sigmodontinae genome. PMID:26800516

  4. Ancestral polymorphism at the major histocompatibility complex (MHCIIß in the Nesospiza bunting species complex and its sister species (Rowettia goughensis

    Directory of Open Access Journals (Sweden)

    van Rensburg Alexandra

    2012-08-01

    Full Text Available Abstract Background The major histocompatibility complex (MHC is an important component of the vertebrate immune system and is frequently used to characterise adaptive variation in wild populations due to its co-evolution with pathogens. Passerine birds have an exceptionally diverse MHC with multiple gene copies and large numbers of alleles compared to other avian taxa. The Nesospiza bunting species complex (two species on Nightingale Island; one species with three sub-species on Inaccessible Island represents a rapid adaptive radiation at a small, isolated archipelago, and is thus an excellent model for the study of adaptation and speciation. In this first study of MHC in Nesospiza buntings, we aim to characterize MHCIIß variation, determine the strength of selection acting at this gene region and assess the level of shared polymorphism between the Nesospiza species complex and its putative sister taxon, Rowettia goughensis, from Gough Island. Results In total, 23 unique alleles were found in 14 Nesospiza and 2 R. goughensis individuals encoding at least four presumably functional loci and two pseudogenes. There was no evidence of ongoing selection on the peptide binding region (PBR. Of the 23 alleles, 15 were found on both the islands inhabited by Nesospiza species, and seven in both Nesospiza and Rowettia; indications of shared, ancestral polymorphism. A gene tree of Nesospiza MHCIIß alleles with several other passerine birds shows three highly supported Nesospiza-specific groups. All R. goughensis alleles were shared with Nesospiza, and these alleles were found in all three Nesospiza sequence groups in the gene tree, suggesting that most of the observed variation predates their phylogenetic split. Conclusions Lack of evidence of selection on the PBR, together with shared polymorphism across the gene tree, suggests that population variation of MHCIIß among Nesospiza and Rowettia is due to ancestral polymorphism rather than local selective

  5. Thermotolerant Yeast Strains Adapted by Laboratory Evolution Show Trade-Off at Ancestral Temperatures and Preadaptation to Other Stresses

    DEFF Research Database (Denmark)

    Caspeta, Luis; Nielsen, Jens

    2015-01-01

    adaptive laboratory evolution, we previously isolated seven Saccharomyces cerevisiae strains with improved growth at 40°C. Here, we show that genetic adaptations to high temperature caused a growth trade-off at ancestral temperatures, reduced cellular functions, and improved tolerance of other stresses...... proteins showed that the lethal temperature for yeast is around 49°C, as a large fraction of the yeast proteins denature above this temperature. Our analysis also indicated that the number of functions involved in controlling the growth rate decreased in the thermotolerant strains compared with the number...

  6. Origin of pegmatites and fluids at Ponta Negra (RJ, Brazil) during late- to post-collisional stages of the Gondwana Assembly

    Science.gov (United States)

    Bongiolo, Everton Marques; Renac, Christophe; Piza, Patricia d'Almeida de Toledo; Schmitt, Renata da Silva; Mexias, André Sampaio

    2016-01-01

    the pegmatites. A linear trend of decreasing CO2 content and δ13CCO2 is consistent with mixtures between (i) carbon derived from organic matter or volatilization of skarns and (ii) inorganic carbon (carbonate). Based on the data obtained, we propose that the pegmatites of Ponta Negra are close to an LCT-type geochemical signature (highly peraluminous magmas with normative corundum), and originated by partial melting of the metasedimentary Palmital succession at depth, during the waning stages of the Búzios Orogeny. The primary melts of the PNP cross-cut both the Neoproterozoic supracrustals and the Paleoproterozoic orthogneissic basement during its ascent and emplacement at higher crustal levels. Variable melt sources explain the slight differences in geochemical compositions among the studied rocks within the metasedimentary succession, which probably include Mn-bearing exhalites, as well as differentiation processes. The 454 ± 5 Ma U-Pb (zircon) age of the Cajú syenogranite overlaps previous geochronological data of 440 ± 11 Ma obtained on a pegmatite dyke at Ponta Negra, bracketing and extending the time interval for the Gondwana assembly collapse magmatism in the region. The heat that triggered this magmatic event could still be a consequence of the collisional orogeny, increasing contents of heat-producing elements, or, a large intraplate extension that followed the Gondwana amalgamation and initiated the formation of Paleozoic basins.

  7. Tropical Pacific Decadal Variability in Subsurface Temperature

    Institute of Scientific and Technical Information of China (English)

    LIU Qinyu; XU Lixiao; LU Jiuyou; WANG Qi

    2012-01-01

    The nature decadal variability of the equatorial Pacific subsurface temperature is examined in the control simulation with the Geophysical Fluid Dynamics Laboratory coupled model CM2.1.The dominant mode of the subsurface temperature variations in the equator Pacific features a 20-40 year period and is North-South asymmetric about the equator.Decadal variations of the thermocline are most pronounced in the southwest of the Tropical Pacific.Decadal variation of the north-south asymmetric Sea Surface wind in the tropical Pacific,especially in the South Pacific Convergence,is the dominant mechanism of the nature decadal variation of the subsurface temperature in the equatorial Pacific.

  8. The jurassic events in the Greater Caucasus basin (Northern Neotethys and the Neuquén basin (West Gondwana: a comparison

    Directory of Open Access Journals (Sweden)

    Dmitry A. Ruban

    2008-12-01

    Full Text Available Quite a few common tectonic, palaeoenvironmental, and palaeobiological events have been recognized in the Jurassic evolution of the Greater Caucasus basin (Northern Neotethys and the Neuquén basin (West Gondwana. Both basins were originated by the same planetary-scale tectonic force, i.e., by the activity of the Intrapangaean Shear Zone stretching eastwards along the Eurasian margin as the Northern Tethyan Shear Zone. An oxygen depletion occurred in both studied regions in the Toarcian as a result of global anoxia, which provoked a mass extinction. In both basins, the Callovian was a time for the carbonate platform growth, although in the Greater Caucasus, a carbonate platform appeared only in the Late Callovian. A salinity crisis occurred in the Greater Caucasus during the Kimmeridgian-Tithonian, whereas the same took place twice in the Neuquén basin - in the Middle Callovian and in the late Oxfordian-Kimmeridgian. These events were related to the global epoch of evaporite deposition. Some important differences between the considered basins are also documented. Palaeontological data from the Neuquén basin suggest against the mass extinction at the Jurassic-Cretaceous transition. In contrast, data from the Greater Caucasus basin permit to recognize this global event, although its regional peak occurred in the Berriasian. The Jurassic transgressions and regressions in the Greater Caucasus and western Argentina differed, facts that may be explained by the differences in the regional geodynamics. The only common pattern was a stepwise transgression during the Sinemurian-Pliensbachian.

  9. Australian provenance for Upper Permian to Cretaceous rocks forming accretionary complexes on the New Zealand sector of the Gondwana land margin

    International Nuclear Information System (INIS)

    U-Pb (SHRIMP) detrital zircon age patterns are reported for 12 samples of Permian to Cretaceous turbiditic quartzo-feldspathic sandstone from the Torlesse and Waipapa suspect terranes of New Zealand. Their major Permian to Triassic, and minor Early Palaeozoic and Mesoproterozoic, age components indicate that most sediment was probably derived from the Carboniferous to Triassic New England Orogen in northeastern Australia. Rapid deposition of voluminous Torlesse/Waipapa turbidite fans during the Late Permian to Late Triassic appears to have been directly linked to uplift and exhumation of the magmatically active orogen during the 265-230 Ma Hunter-Bowen event. This period of cordilleran-type orogeny allowed transport of large volumes of quartzo-feldspathic sediment across the convergent Gondwana land margin. Post-Triassic depocentres also received (recycled?) sediment from the relict orogen as well as from Jurassic and Cretaceous volcanic provinces now offshore from southern Queensland and northern New South Wales. The detailed provenance-age fingerprints provided by the detrital zircon data are also consistent with progressive southward derivation of sediment: from northeastern Queensland during the Permian, southeastern Queensland during the Triassic, and northeastern New South Wales - Lord Howe Rise - Norfolk Ridge during the Jurassic to Cretaceous. Although the dextral sense of displacement is consistent with the tectonic regime during this period, detailed characterisation of source terranes at this scale is hindered by the scarcity of published zircon age data for igneous and sedimentary rocks in Queensland and northern New South Wales. Mesoproterozoic and Neoproterozoic age components cannot be adequately matched with likely source terranes in the Australian-Antarctic Precambrian craton, and it is possible they originated in the Proterozoic cores of the Cathaysia and Yangtze Blocks of southeast China. Copyright (1999) Geological Society of Australia

  10. Moa's Ark or volant ghosts of Gondwana? Insights from nineteen years of ancient DNA research on the extinct moa (Aves: Dinornithiformes) of New Zealand.

    Science.gov (United States)

    Allentoft, Morten E; Rawlence, Nicolas J

    2012-01-20

    The moa (Aves: Dinornithiformes) of New Zealand represent one of the extinct iconic taxa that define the field of ancient DNA (aDNA), and after almost two decades of genetic scrutiny of bones, feathers, coprolites, mummified tissue, eggshell, and sediments, our knowledge of these prehistoric giants has increased significantly. Thanks to molecular and morphological-based research, the insights that have been obtained into moa phylogenetics, phylogeography, and palaeobiology exceeds that of any other extinct taxon. This review documents the strengths of applying a multidisciplinary approach when studying extinct taxa but also shows that cross-disciplinary controversies still remain at the most fundamental levels, with highly conflicting interpretations derived from aDNA and morphology. Moa species diversity, for example, is still heavily debated, as well as their relationship with other ratites and the mode of radiation. In addition to increasing our knowledge on a lineage of extinct birds, further insights into these aspects can clarify some of the basal splits in avian evolution, and the evolutionary implications of the breakup of the prehistoric supercontinent Gondwana. Did a flightless moa ancestor drift away on proto New Zealand (Moa's Ark) or did a volant ancestor arrive by flight? Here we provide an overview of 19 years of aDNA research on moa, critically assess the attempts and controversies in placing the moa lineage among palaeognath birds, and discuss the factors that facilitated the extensive radiation of moa. Finally, we identify the most obvious gaps in the current knowledge to address the future potential research areas in moa genetics. PMID:21596537

  11. Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position

    Directory of Open Access Journals (Sweden)

    Lang Michael

    2010-11-01

    Full Text Available Abstract Background The modern coelacanth (Latimeria is the extant taxon of a basal sarcopterygian lineage and sister group to tetrapods. Apart from certain apomorphic traits, its morphology is characterized by a high degree of retention of ancestral vertebrate structures and little morphological change. An insight into the molecular evolution that may explain the unchanged character of Latimeria morphology requires the analysis of the expression patterns of developmental regulator genes and their cis-regulatory modules (CRMs. Results We describe the comparative and functional analysis of the sonic hedgehog (shh genomic region of Latimeria menadoensis. Several putative enhancers in the Latimeria shh locus have been identified by comparisons to sarcopterygian and actinopterygian extant species. Specific sequence conservation with all known actinopterygian enhancer elements has been detected. However, these elements are selectively missing in more recently diverged actinopterygian and sarcopterygian species. The functionality of the putative Latimeria enhancers was confirmed by reporter gene expression analysis in transient transgenic zebrafish and chick embryos. Conclusions Latimeria shh CRMs represent the ancestral set of enhancers that have emerged before the split of lobe-finned and ray-finned fishes. In contrast to lineage-specific losses and differentiations in more derived lineages, Latimeria shh enhancers reveal low levels of sequence diversification. High overall sequence conservation of shh conserved noncoding elements (CNE is consistent with the general trend of high levels of conservation of noncoding DNA in the slowly evolving Latimeria genome.

  12. Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses.

    Science.gov (United States)

    Witkowski, Peter T; Drexler, Jan F; Kallies, René; Ličková, Martina; Bokorová, Silvia; Mananga, Gael D; Szemes, Tomáš; Leroy, Eric M; Krüger, Detlev H; Drosten, Christian; Klempa, Boris

    2016-07-01

    Until recently, hantaviruses (family Bunyaviridae) were believed to originate from rodent reservoirs. However, genetically distinct hantaviruses were lately found in shrews and moles, as well as in bats from Africa and Asia. Bats (order Chiroptera) are considered important reservoir hosts for emerging human pathogens. Here, we report on the identification of a novel hantavirus, provisionally named Makokou virus (MAKV), in Noack's Roundleaf Bat (Hipposideros ruber) in Gabon, Central Africa. Phylogenetic analysis of the genomic l-segment showed that MAKV was the most closely related to other bat-borne hantaviruses and shared a most recent common ancestor with the Asian hantaviruses Xuan Son and Laibin. Breakdown of the virus load in a bat animal showed that MAKV resembles rodent-borne hantaviruses in its organ distribution in that it predominantly occurred in the spleen and kidney; this provides a first insight into the infection pattern of bat-borne hantaviruses. Ancestral state reconstruction based on a tree of l gene sequences of all relevant hantavirus lineages was combined with phylogenetic fossil host hypothesis testing, leading to a statistically significant rejection of the mammalian superorder Euarchontoglires (including rodents) but not the superorder Laurasiatheria (including shrews, moles, and bats) as potential hosts of ancestral hantaviruses at most basal tree nodes. Our data supports the emerging concept of bats as previously overlooked hantavirus reservoir hosts. PMID:27051047

  13. North Pacific Pelagic Seabird Database (NPPSD)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The North Pacific Pelagic Seabird Database (NPPSD) was created in 2005 to consolidate data on the oceanic distribution of marine bird species in the North Pacific....

  14. Pacific Northwest Salmon Habitat Project Database

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In the Pacific Northwest Salmon Habitat Project Database Across the Pacific Northwest, both public and private agents are working to improve riverine habitat for a...

  15. South Pacific Nuclear Free Zone Treaty

    International Nuclear Information System (INIS)

    The full text of the South Pacific Nuclear Free Zone Treaty with its Annexes endorsed on 6 August 1985 by the South Pacific Forum (a body comprising the independent and self-governing countries of the South Pacific, namely Australia, the Cook Islands, Fiji, Kiribati, Nauru, New Zealand, Nive, Papua New Guinea, the Solomon Islands, Tonga, Tuvalu, Vanuatu and Western Samoa) is presented

  16. South Pacific Nuclear Free Zone Treaty

    International Nuclear Information System (INIS)

    On 6 August 1985 the South Pacific Forum, a body comprising the independent and self-governing countries of the South Pacific (Australia, the Cook Islands, Fiji, Kiribati, Nauru, New Zealand, Niue, Papua New Guinea, the Solomon Islands, Tonga, Tuvalu, Vanuatu and Western Samoa), endorsed the text of the South Pacific Nuclear Free Zone Treaty and opened it for signature

  17. Proto-Pacific-margin source for the Ordovician turbidite submarine fan, Lachlan Orogen, southeast Australia: Geochemical constraints

    Science.gov (United States)

    Offler, R.; Fergusson, C. L.

    2016-04-01

    The Early Palaeozoic proto-Pacific Pacific margin of Gondwana was characterised by a huge turbidite submarine fan with abundant clastic detritus derived from unknown sources within Gondwana. These deposits are widespread in the Lachlan Orogen of southeast Australia and include the Ordovician Adaminaby Group. Here we show that the mudstones and sandstones of the Adaminaby Group have chemical compositions that indicate the detritus in them was derived from a felsic, continental source similar in composition to Post Archean Australian Shales (PAAS). Chondrite normalised REE patterns showing LREE enrichment, flat PAAS normalised patterns and elemental ratios La/Sc, Cr/Th, Cr/V, Th/Sc and Th/U, have been used to support this interpretation. The dominance of quartz, and to a lesser degree plagioclase and biotite in the sandstones, suggests that the source was mainly granodioritic to tonalitic in composition. Th/Yb and Ta/Yb ratios indicate that the source was probably calc-alkaline, continental and shoshonitic. In addition, the presence of detrital muscovite, low-grade metamorphic and felsic volcanic clasts, demonstrates that a low-grade metamorphic terrane and volcanic arc contributed to the detritus observed in the samples. The presence of well-rounded zircons and tourmalines, very high Zr contents, high Zr/Sc and higher Cr/V ratios in some samples particularly in the Shoalhaven River area, indicate that some of the detritus was recycled. SiO2 versus (Al2O3 + K2O + Na2O) plots suggest the source areas experienced conditions varying from humid/semi-humid to semi-arid. Textural features and weathering trends of samples from all locations follow a curved pathway on Al2O3 - (CaO* + Na2O) - K2O (ACNK) diagrams, and indicate that the clays formed from weathering had been K-metasomatised prior to penetrative deformation. Chemical indices of alteration (CIA) reveal that even the freshest sandstones are altered and others are moderately to strongly altered. Discrimination

  18. Code breaking in the pacific

    CERN Document Server

    Donovan, Peter

    2014-01-01

    Covers the historical context and the evolution of the technically complex Allied Signals Intelligence (Sigint) activity against Japan from 1920 to 1945 Describes, explains and analyzes the code breaking techniques developed during the war in the Pacific Exposes the blunders (in code construction and use) made by the Japanese Navy that led to significant US Naval victories

  19. Detrital zircon SHRIMP U-Pb age study of the Cordillera Darwin Metamorphic Complex of Tierra del Fuego : sedimentary sources and implications for the evolution of the Pacific margin of Gondwana

    OpenAIRE

    Herve, F.; Fanning, C.M.; Pankhurst, R.J.; Mpodozis, C.; Klepeis, K.; Calderon, M.; S. N. Thomson

    2010-01-01

    The Cordillera Darwin Metamorphic Complex in the southernmost Andes includes a basement of probable Palaeozoic age, a mid-Jurassic and younger volcano-sedimentary cover, and a suite of Jurassic granites, all of which were jointly metamorphosed during the Cretaceous. Detrital zircon ages presented here show that some of the amphibolite-facies metamorphic rocks previously mapped as basement have a Jurassic protolith. Overall the detrital zircon age patterns for samples of the Cordillera Darwin ...

  20. Septarian carbonate concretions in the Permian Rio do Rasto Formation: Birth, growth and implications for the early diagenetic history of southwestern Gondwana succession

    Science.gov (United States)

    Alessandretti, Luciano; Warren, Lucas Veríssimo; Machado, Rômulo; Novello, Valdir Felipe; Sayeg, Isaac Jamil

    2015-08-01

    Between the Late Carboniferous and Early Triassic, the southwestern Gondwana supercontinent was characterized by the development of a huge intracratonic basin. A large confined epeiric sea and the accumulation of a transgressive-regressive sequence were formed by continuous subsidence related to tectonic effects caused by the Sanrafaelic Orogeny and the consequent generation of accommodation space. The Permian Rio do Rasto Formation documents the last progradational cycle related to the complete continentalization of this epeiric sea. The basal member of the Rio do Rasto Formation (Serrinha) is believed to have been deposited in a shallow epicontinental water body subjected to storms and influenced by episodic deltaic incursions. One of the most remarkable characteristics of the Serrinha Member is the presence of carbonate concretions hosted in mudstones and very fine sandstones. Here, we combine sedimentological and petrographic descriptions coupled with geochemical and stable carbon and oxygen isotopic data to elucidate the nature of these carbonate concretions. The non-deformed internal structure, decreasing proportion of carbonate cements relative to detrital grains toward the concretion edges, core-to-rim isotopic variations, and perhaps most importantly, the preservation of a well-developed cardhouse fabric support an early diagenetic origin for these structures at shallow burial depths of tens of meters. Stable isotope analyses of micritic calcite cements and calcites filling the septarian fractures reveal major negative excursions in both δ18O and δ13C values. Oxygen isotope ratios obtained for the micritic calcite cements vary between - 12.1 and - 2.6‰. The calcite filling septarian fractures also exhibit negative values of δ18O (- 14.2 to - 13.8‰), with an average of - 14‰. The δ13C values of micritic calcite cements range from - 5.0-0.2‰. The carbon isotopic data from the calcite-filling septarian fractures are also negative (- 4.4 to - 3.3

  1. An in situ shelly fauna from the lower Paleozoic Zapla diamictite of northwestern Argentina: Implications for the age of glacial events across Gondwana

    Science.gov (United States)

    Benedetto, Juan L.; Halpern, Karen; de la Puente, G. Susana; Monaldi, César R.

    2015-12-01

    A shelly fauna from the upper part of the Zapla glacial diamictite includes the lingulate brachiopod Orbiculoidea radiata Troedsson, the rhynchonelliforms Dalmanella cf. testudinaria (Dalman) and Paromalomena sp., the bivalve Modiolopsis? sp., and the trilobite Dalmanitina subandina Monaldi and Boso. Both taphonomic and paleoecologic data indicate a lack of transport reflecting the original community. The assemblage is closely comparable to the widespread latest Ordovician Hirnantia-Dalmanitina fauna. The Hirnantian age of the Zapla diamictite is further corroborated by the record of the northern Gondwana chitinozoans Spinachitina cf. oulebsiri Paris and Desmochitina minor typica Eisenack. The graptolites and chitinozoans from the overlying Lipeón Formation indicate that the postglacial transgression took place in the earliest Llandovery (Parakidograptus acuminatus Biozone). According to the tectonosedimentary evidence, the Early Silurian age of the Cancañiri and San Gabán diamictites of north-central Bolivia and south Peru based on their palynological record is more likely the age of posglacial gravity flows and not that of the glaciation. We support the hypothesis that the weakly lithified glacigenic deposits of Hirnantian age were reworked and redistributed by high-energy marine processes during the postglacial transgression and then transported to the adjacent deep-marine trough. Iron-rich horizons have been recognized in many basins of southern South America reflecting eustatic and paleoclimatic fluctuations. Most of them formed during the early stages of the postglacial transgression at the Ordovician/Silurian transition and are associated with low sedimentation rates and condensed intervals. The mild maritime postglacial climate, the increasing atmospheric CO2, and possibly the presence of incipient vegetated areas led to extensive weathering of glacigenic sediments supplying iron into the marine system to form ferruginous deposits. The sea level fall

  2. The Palu Metamorphic Complex, NW Sulawesi, Indonesia: Origin and evolution of a young metamorphic terrane with links to Gondwana and Sundaland

    Science.gov (United States)

    van Leeuwen, Theo; Allen, Charlotte M.; Elburg, Marlina; Massonne, Hans-Joachim; Palin, J. Michael; Hennig, Juliane

    2016-01-01

    The Palu Metamorphic Complex (PMC) is exposed in a late Cenozoic orogenic belt in NW Sulawesi, Indonesia. It is a composite terrane comprising a gneiss unit of Gondwana origin, a schist unit composed of meta-sediments deposited along the SE Sundaland margin in the Late Cretaceous and Early Tertiary, and one or more slivers of amphibolite with oceanic crust characteristics. The gneiss unit forms part of the West Sulawesi block underlying the northern and central sections of the Western Sulawesi Province. The presence of Late Triassic granitoids and recycled Proterozoic zircons in this unit combined with its isotopic signature suggests that the West Sulawesi block has its origin in the New Guinea margin from which it rifted in the late Mesozoic. It docked with Sundaland sometime during the Late Cretaceous. U-Th-Pb dating results for monazite suggest that another continental fragment may have collided with the Sundaland margin in the earliest Miocene. High-pressure (HP) and ultrahigh-pressure (UHP) rocks (granulite, peridotite, eclogite) are found as tectonic slices within the PMC, mostly along the Palu-Koro Fault Zone, a major strike-slip fault that cuts the complex. Mineralogical and textural features suggest that some of these rocks resided at depths of 60-120 km during a part of their histories. Thermochronological data (U-Th-Pb zircon and 40Ar/39Ar) from the metamorphic rocks indicate a latest Miocene to mid-Pliocene metamorphic event, which was accompanied by widespread granitoid magmatism and took place in an extensional tectonic setting. It caused recrystallization of, and new overgrowths on, pre-existing zircon crystals, and produced andalusite-cordierite-sillimanite-staurolite assemblages in pelitic protoliths, indicating HT-LP (Buchan-type) metamorphism. The PMC was exhumed as a core complex at moderate rates (c. 0.7-1.0 mm/yr) accompanied by rapid cooling in the Plio-Pleistocene. Some of the UHP rocks were transported to the surface at significantly higher

  3. Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model

    DEFF Research Database (Denmark)

    Mailund, Thomas; Dutheil, Julien; Hobolth, Asger;

    2011-01-01

    ue to genetic variation in the ancestor of two populations or two species, the divergence time for DNA sequences from two populations is variable along the genome. Within genomic segments all bases will share the same divergence—because they share a most recent common ancestor—when no recombination...... event has occurred to split them apart. The size of these segments of constant divergence depends on the recombination rate, but also on the speciation time, the effective population size of the ancestral population, as well as demographic effects and selection. Thus, inference of these parameters may...... be possible if we can decode the divergence times along a genomic alignment. Here, we present a new hidden Markov model that infers the changing divergence (coalescence) times along the genome alignment using a coalescent framework, in order to estimate the speciation time, the recombination rate...

  4. An Interpretation of the Ancestral Codon from Miller’s Amino Acids and Nucleotide Correlations in Modern Coding Sequences

    Science.gov (United States)

    Carels, Nicolas; de Leon, Miguel Ponce

    2015-01-01

    Purine bias, which is usually referred to as an “ancestral codon”, is known to result in short-range correlations between nucleotides in coding sequences, and it is common in all species. We demonstrate that RWY is a more appropriate pattern than the classical RNY, and purine bias (Rrr) is the product of a network of nucleotide compensations induced by functional constraints on the physicochemical properties of proteins. Through deductions from universal correlation properties, we also demonstrate that amino acids from Miller’s spark discharge experiment are compatible with functional primeval proteins at the dawn of living cell radiation on earth. These amino acids match the hydropathy and secondary structures of modern proteins. PMID:25922573

  5. Low pathogenic avian influenza (H9N2) in chicken: Evaluation of an ancestral H9-MVA vaccine.

    Science.gov (United States)

    Ducatez, Mariette F; Becker, Jens; Freudenstein, Astrid; Delverdier, Maxence; Delpont, Mattias; Sutter, Gerd; Guérin, Jean-Luc; Volz, Asisa

    2016-06-30

    Modified Vaccinia Ankara (MVA) has proven its efficacy as a recombinant vector vaccine for numerous pathogens including influenza virus. The present study aimed at evaluating a recombinant MVA candidate vaccine against low pathogenic avian influenza virus subtype H9N2 in the chicken model. As the high genetic and antigenic diversity of H9N2 viruses increases vaccine design complexity, one strategy to widen the range of vaccine coverage is to use an ancestor sequence. We therefore generated a recombinant MVA encoding for the gene sequence of an ancestral hemagglutinin H9 protein (a computationally derived amino acid sequence of the node of the H9N2 G1 lineage strains was obtained using the ANCESCON program). We analyzed the genetics and the growth properties of the MVA vector virus confirming suitability for use under biosafety level 1 and tested its efficacy when applied either as an intra-muscular (IM) or an oral vaccine in specific pathogen free chickens challenged with A/chicken/Tunisia/12/2010(H9N2). Two control groups were studied in parallel (unvaccinated and inoculated birds; unvaccinated and non-inoculated birds). IM vaccinated birds seroconverted as early as four days post vaccination and neutralizing antibodies were detected against A/chicken/Tunisia/12/2010(H9N2) in all the birds before challenge. The role of local mucosal immunity is unclear here as no antibodies were detected in eye drop or aerosol vaccinated birds. Clinical signs were not detected in any of the infected birds even in absence of vaccination. Virus replication was observed in both vaccinated and unvaccinated chickens, suggesting the MVA-ancestral H9 vaccine may not stop virus spread in the field. However vaccinated birds showed less histological damage, fewer influenza-positive cells and shorter virus shedding than their unvaccinated counterparts. PMID:27259828

  6. The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times

    Institute of Scientific and Technical Information of China (English)

    Konstantinos ANGELIS; Mario DOS REIS

    2015-01-01

    Although the effects of the coalescent process on sequence divergence and genealogies are well understood, the vir-tual majority of studies that use molecular sequences to estimate times of divergence among species have failed to account for the coalescent process. Here we study the impact of ancestral population size and incomplete lineage sorting on Bayesian estimates of species divergence times under the molecular clock when the inference model ignores the coalescent process. Using a combi-nation of mathematical analysis, computer simulations and analysis of real data, we find that the errors on estimates of times and the molecular rate can be substantial when ancestral populations are large and when there is substantial incomplete lineage sort-ing. For example, in a simple three-species case, we find that if the most precise fossil calibration is placed on the root of the phylogeny, the age of the internal node is overestimated, while if the most precise calibration is placed on the internal node, then the age of the root is underestimated. In both cases, the molecular rate is overestimated. Using simulations on a phylogeny of nine species, we show that substantial errors in time and rate estimates can be obtained even when dating ancient divergence events. We analyse the hominoid phylogeny and show that estimates of the neutral mutation rate obtained while ignoring the coalescent are too high. Using a coalescent-based technique to obtain geological times of divergence, we obtain estimates of the mutation rate that are within experimental estimates and we also obtain substantially older divergence times within the phylogeny [Current Zoology 61 (5): 874–885, 2015].

  7. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories

    Science.gov (United States)

    Hanson-Smith, Victor; Johnson, Alexander

    2016-01-01

    The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1) reconstruct and “resurrect” (that is, synthesize in vivo or in vitro) extinct proteins to study how they differ from modern proteins, (2) identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3) order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above), or use our open-source code to launch their own PhyloBot server. PMID:27472806

  8. Stem cell-specific activation of an ancestral myc protooncogene with conserved basic functions in the early metazoan Hydra

    Science.gov (United States)

    Hartl, Markus; Mitterstiller, Anna-Maria; Valovka, Taras; Breuker, Kathrin; Hobmayer, Bert; Bister, Klaus

    2010-01-01

    The c-myc protooncogene encodes a transcription factor (Myc) with oncogenic potential. Myc and its dimerization partner Max are bHLH-Zip DNA binding proteins controlling fundamental cellular processes. Deregulation of c-myc leads to tumorigenesis and is a hallmark of many human cancers. We have identified and extensively characterized ancestral forms of myc and max genes from the early diploblastic cnidarian Hydra, the most primitive metazoan organism employed so far for the structural, functional, and evolutionary analysis of these genes. Hydra myc is specifically activated in all stem cells and nematoblast nests which represent the rapidly proliferating cell types of the interstitial stem cell system and in proliferating gland cells. In terminally differentiated nerve cells, nematocytes, or epithelial cells, myc expression is not detectable by in situ hybridization. Hydra max exhibits a similar expression pattern in interstitial cell clusters. The ancestral Hydra Myc and Max proteins display the principal design of their vertebrate derivatives, with the highest degree of sequence identities confined to the bHLH-Zip domains. Furthermore, the 314-amino acid Hydra Myc protein contains basic forms of the essential Myc boxes I through III. A recombinant Hydra Myc/Max complex binds to the consensus DNA sequence CACGTG with high affinity. Hybrid proteins composed of segments from the retroviral v-Myc oncoprotein and the Hydra Myc protein display oncogenic potential in cell transformation assays. Our results suggest that the principal functions of the Myc master regulator arose very early in metazoan evolution, allowing their dissection in a simple model organism showing regenerative ability but no senescence. PMID:20142507

  9. ¿Con o sin ancestros? Vigencia de lo ancestral en la Amazonía peruana

    Directory of Open Access Journals (Sweden)

    Thomas Mouriès

    2014-07-01

    Full Text Available The existence —or not— of the concept of ancestors in the indigenous Amazon has been the subject of much debate. However, regional leaders do not hesitate to call upon ‘ancestral’ knowledge, customs, or territories in the sense that, from an academic point of view, could appear enigmatic. «Ancestral, but… with or without ancestors?» is the question a confused anthropologist might ask. In this article, I propose to offer elements of a response to this question,based on a case study in Peru. First I analyze how Amazonian indigenous leaders, following international law, have adopted the legal notion of ‘ancestral possession’ of their territory to adapt it to the political sphere. This approach accounts for the recent generalization and uniformization of the term ‘ancestral’, but poses the problem of how it articulates with the indigenous cosmologies that it supposes to reflect. For this reason, I explore in the second section the pertinence of the category of ‘ancestor’ in the indigenous Amazon, briefly drawing upon the academic debate in order to define inwhat way this category takes on meaning. Based on testimony from an experienced Awajún leader, we thus return in the third section more explicitly to the different meanings and planes of reference that unfold when one uses the term ‘ancestral’, showing how Amazonian indigenous people not only adopt external conceptual elements and arguments, but also transform them based on their own cosmological singularities and political perspectives.

  10. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories.

    Science.gov (United States)

    Hanson-Smith, Victor; Johnson, Alexander

    2016-07-01

    The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1) reconstruct and "resurrect" (that is, synthesize in vivo or in vitro) extinct proteins to study how they differ from modern proteins, (2) identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3) order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above), or use our open-source code to launch their own PhyloBot server. PMID:27472806

  11. Orangutan fish eating, primate aquatic fauna eating, and their implications for the origins of ancestral hominin fish eating.

    Science.gov (United States)

    Russon, Anne E; Compost, Alain; Kuncoro, Purwo; Ferisa, Agnes

    2014-12-01

    This paper presents new evidence of fish eating in rehabilitant orangutans living on two Bornean islands and explores its contributions to understanding nonhuman primates' aquatic fauna eating and the origins of ancestral hominin fish eating. We assessed the prevalence of orangutans' fish eating, their techniques for obtaining fish, and possible contributors (ecology, individual differences, humans). We identified 61 events in which orangutans tried to obtain fish, including 19 in which they ate fish. All the orangutans were juvenile-adolescent; all the fish were disabled catfish; and most were obtained and eaten in drier seasons in or near shallow, slow-moving water. Orangutans used several techniques to obtain fish (inadvertent, opportunistic and deliberate hand-catch, scrounge, tool-assisted catch) and probably learned them in that order. Probable contributing factors were orangutan traits (age, pre-existing water or tool skills), island features (social density, water accessibility), and local human fishing. Our review of primates' aquatic fauna eating showed orangutans to be one of 20 species that eat aquatic fauna, one of nine confirmed to eat fish, and one of three that use tools to obtain fish. Primate fish eating is also site-specific within species, partly as a function of habitat (e.g., marine-freshwater, seasonality) and human influence (possibly fostered eating fish or other aquatic fauna at most sites, clearly induced it at some). At tropical freshwater sites, fish eating occurred most often in drier seasons around shallow water. Orangutan and primate findings are generally consistent with Stewart's (2010) reconstruction of the origins of ancestral hominin fish eating, but suggest that it, and tool-assisted fish catching, were possible much earlier. PMID:25038033

  12. Cis-by-Trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene.

    Directory of Open Access Journals (Sweden)

    Shamoni Maheshwari

    Full Text Available The Dobzhansky and Muller (D-M model explains the evolution of hybrid incompatibility (HI through the interaction between lineage-specific derived alleles at two or more loci. In agreement with the expectation that HI results from functional divergence, many protein-coding genes that contribute to incompatibilities between species show signatures of adaptive evolution, including Lhr, which encodes a heterochromatin protein whose amino acid sequence has diverged extensively between Drosophila melanogaster and D. simulans by natural selection. The lethality of D. melanogaster/D. simulans F1 hybrid sons is rescued by removing D. simulans Lhr, but not D. melanogaster Lhr, suggesting that the lethal effect results from adaptive evolution in the D. simulans lineage. It has been proposed that adaptive protein divergence in Lhr reflects antagonistic coevolution with species-specific heterochromatin sequences and that defects in LHR protein localization cause hybrid lethality. Here we present surprising results that are inconsistent with this coding-sequence-based model. Using Lhr transgenes expressed under native conditions, we find no evidence that LHR localization differs between D. melanogaster and D. simulans, nor do we find evidence that it mislocalizes in their interspecific hybrids. Rather, we demonstrate that Lhr orthologs are differentially expressed in the hybrid background, with the levels of D. simulans Lhr double that of D. melanogaster Lhr. We further show that this asymmetric expression is caused by cis-by-trans regulatory divergence of Lhr. Therefore, the non-equivalent hybrid lethal effects of Lhr orthologs can be explained by asymmetric expression of a molecular function that is shared by both orthologs and thus was presumably inherited from the ancestral allele of Lhr. We present a model whereby hybrid lethality occurs by the interaction between evolutionarily ancestral and derived alleles.

  13. Comparative Study on the Electrical Properties of the Oceanic Mantle Beneath the Northwest Pacific Ocean

    Science.gov (United States)

    Toh, H.

    2013-12-01

    responses as well. It, however, should be also noted here that the penetration depth beneath Site WPB is significantly smaller than that beneath Site NWP because the solar activity has been very low since 2006. References Ichiki, M., K. Baba, H. Toh and K. Fuji-ta, An overview of electrical conductivity structures of the crust and upper mantle beneath the northwestern Pacific, the Japanese Islands, and continental East Asia, Gondwana Research, 16, 545?562, doi:10.1016/j.gr.2009.04.007, 2009. Salisbury MH et al (2006) 2. Leg 195 Synthesis: Site 1201?A geological and geophysical section in the West Philippine Basin from the 660-km discontinuity to the mudline. Proc. Ocean Drilling Program, Scientific Reports 195:27. Shipboard Scientific Party of ODP Leg 191 (2000) Northwest Pacific seismic observatory and hammer drill tests, Proc. Ocean Drilling Program, Initial Reports 191. Toh, H., Y. Hamano and M. Ichiki, Long-term seafloor geomagnetic station in the northwest Pacific: A possible candidate for a seafloor geomagnetic observatory, Earth Planets Space, 58, 697-705, 2006. Toh, H., Y. Hamano, M. Ichiki and H. Utada, Geomagnetic observatory operates at the seafloor in the Northwest Pacific Ocean, Eos, Trans. Am. Geophys. Union, 85, 467/473, DOI: 10.1029/2004EO450003, 2004.

  14. Infectious diseases of Pacific salmon

    Science.gov (United States)

    1954-01-01

    Investigations on infectious diseases of Pacific salmon due to micro-organisms other than viruses are reviewed. The etiological agents include trematodes, fungi, protozoa and bacteria. Bacteria have been found to be the most important agents of disease in the several species of Pacific salmon. Kidney disease, due to a small, unnamed Gram-positive diplobacillus, causes serious mortalities in young salmon reared in hatcheries. The disease has also been found in wild fish. Aquatic myxobacteria are important agents of disease both in the hatchery and in the natural habitat. One of the myxobacteria, Chondrococcus columnaris, causes disease at relatively high water temperatures. The problem of the taxonomy of this organism is discussed. Another myxobacterium, Cytophaga psychrophila, has been found responsible for epizootics in coho salmon at lower water temperatures, i.e., in the range of 40° to 55° F. In outbreaks of gill disease in young salmon, myxobacteria of several kinds have been implicated.

  15. Measuring Poverty in the Pacific

    OpenAIRE

    Matthew Morris

    2011-01-01

    Measuring poverty in the Pacific is important to keep poor people on the policy agenda, to design effective policies and programs and to carry out rigorous evaluation so that we know what works and why. There are various definitions of poverty, ranging from a narrow focus on adequate calorie consumption through to broader concepts of capabilities. This paper takes a practical look at how to measure one conventional indicator of poverty: income (or consumption) poverty. In doing so, the paper ...

  16. The Importance of the Pacific

    Directory of Open Access Journals (Sweden)

    Manuel Montobbio

    1995-01-01

    Full Text Available Asia has now woken up. Its huge economic development is proof of this. The Asian-Pacific nations have known how to adopt Western means of production and have incorporated them into their own culture and tradition. However, this does not mean that they are not undergoing profound transformations both at a domestic and external level, as can be highlighted, with regard to the latter, by the desire to establish a new order in the Asia-Pacific region. In this context, the present article analyses whether this dynamic presents a reformation of the world order: the fundamental role that the US plays in this region after the Cold War; the new actors and power relations that are emerging such as Japan, China and ASEAN (Association of South East Nations; and forums such as APEC (AsiaPacific Economic Cooperation, EAEC (East Asian Economic Conference, ASEAN and the ASEAN Security Forum, created and empowered among other things in order to keep a check on the reappearance of those old “ghosts” (nationalisms, territorial disputes pending solution which could triumph over the growing prosperity.Finally, the author draws to attention the Europe of the EU which is too busy in its own self-construction and puts before it the challenge of knowing how to shape itself into the third great actor of the region, after the U.S. and Japan and he speaks of the necessityfor Spain to be more present in the Pacific given that it is vital for its economy.

  17. Pacific Northwest regional assessment program

    International Nuclear Information System (INIS)

    The Pacific Northwest (comprised of the states of Alaska, Idaho, Montana, Oregon, Washington and Wyoming) can by several measures be regarded as a national warehouse of fossil energy resources. This condition coupled with an evolving national policy stressing utilization of fossil fuels in the near term prior to development of more advanced technologies for energy supply, could result in the imposition of major changes in the region's environmental, socioeconomic and possibly health status. The objective of the Pacific Northwest Regional Assessment Program is to establish and exercise an integrated analytical assessment program for evaluation of these potential changes that may result from various energy development or conservation scenarios. After consideration of a variety of approaches to integrated assessment at a regional level, Pacific Northwest Laboratories (PNL) has concluded that dynamic simulation techniques provide the best available approach to evaluating the issues pertinent to the Northwest. As a result, the PNW Regional Assessment Program has been structured in a framework involving ten sectors. Each of these sectors involve their own submodels that receive information either from outside the model as exogenous inputs or from other sector submodels

  18. Biological data - Integrated acoustic and trawl survey of Pacific hake off the Pacific Coast

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Integrated acoustic and trawl surveys are used to assess the distribution, biomass, and biology of Pacific hake along the Pacific coasts of the United States and...

  19. Acoustic data - Integrated acoustic and trawl survey of Pacific hake off the Pacific Coast

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Integrated acoustic and trawl surveys are used to assess the distribution, biomass, and biology of Pacific hake along the Pacific coasts of the United States and...

  20. Oceanographic data - Integrated acoustic and trawl survey of Pacific hake off the Pacific Coast

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Integrated acoustic and trawl surveys are used to assess the distribution, biomass, and biology of Pacific hake along the Pacific coasts of the United States and...

  1. Pacific Hake - Growth and natal origin of Pacific hake from the Georgia Basin DPS

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Pacific hake (Merluccius productus) is an abundant species residing along the Pacific coast from the Gulf of California to the Strait of Georgia. It is the most...

  2. Climate Prediction Center (CPC) East Pacific/ North Pacific Teleconnection Pattern Index

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Monthly tabulated index of the East Pacific/ North Pacific teleconnection pattern. The data spans the period 1950 to present. The index is derived from a rotated...

  3. Genesis of the vertebrate FoxP subfamily member genes occurred during two ancestral whole genome duplication events.

    Science.gov (United States)

    Song, Xiaowei; Tang, Yezhong; Wang, Yajun

    2016-08-22

    The vertebrate FoxP subfamily genes play important roles in the construction of essential functional modules involved in physiological and developmental processes. To explore the adaptive evolution of functional modules associated with the FoxP subfamily member genes, it is necessary to study the gene duplication process. We detected four member genes of the FoxP subfamily in sea lampreys (a representative species of jawless vertebrates) through genome screenings and phylogenetic analyses. Reliable paralogons (i.e. paralogous chromosome segments) have rarely been detected in scaffolds of FoxP subfamily member genes in sea lampreys due to the considerable existence of HTH_Tnp_Tc3_2 transposases. However, these transposases did not alter gene numbers of the FoxP subfamily in sea lampreys. The coincidence between the "1-4" gene duplication pattern of FoxP subfamily genes from invertebrates to vertebrates and two rounds of ancestral whole genome duplication (1R- and 2R-WGD) events reveal that the FoxP subfamily of vertebrates was quadruplicated in the 1R- and 2R-WGD events. Furthermore, we deduced that a synchronous gene duplication process occurred for the FoxP subfamily and for three linked gene families/subfamilies (i.e. MIT family, mGluR group III and PLXNA subfamily) in the 1R- and 2R-WGD events using phylogenetic analyses and mirror-dendrogram methods (i.e. algorithms to test protein-protein interactions). Specifically, the ancestor of FoxP1 and FoxP3 and the ancestor of FoxP2 and FoxP4 were generated in 1R-WGD event. In the subsequent 2R-WGD event, these two ancestral genes were changed into FoxP1, FoxP2, FoxP3 and FoxP4. The elucidation of these gene duplication processes shed light on the phylogenetic relationships between functional modules of the FoxP subfamily member genes. PMID:27188254

  4. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    APJTB Monthly Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding,preventing and controlling the dramatic global emergence and reemergence of infectious diseases in the Asian Pacific region.

  5. Summary Report: Asian Pacific Islander Workers Hearing

    OpenAIRE

    Asian Pacific American Labor Alliance; AFL-CIO; UCLA Labor Center

    2002-01-01

    The first ever California State Assembly Hearing on Asian Pacific Islander Workers was convened by the Labor Employment Committee and the Asian Pacific Islander Legislative Caucus, at the request of Assembly member Judy Chu. The Hearing brought together Asian Pacific Islander workers and advocates from all over California. Their stories are a snapshot of millions of workers. The testimonies gave a glimpse of the detrimental impact that worker exploitation has on families and communities. Most...

  6. Permanent and Transitory Shocks among Pacific Island Economies - Prospects for a Pacific Islands Currency Union

    OpenAIRE

    Willie Lahari

    2010-01-01

    This paper re-kindles the debate on the feasibility of a Pacific Islands currency union in view of the recent expansion and consolidation of regional strategies and agreements such as the ÔPacific PlanÕ and the Pacific Agreement on Closer Economic Relations Plus. These initiatives, including past efforts, have given limited consideration to the subject for a Pacific Islands currency union. This study exploits the optimal currency area theoretical framework and employs the Gonzalo and Ng (2001...

  7. South Pacific Nuclear Free Zone Treaty

    International Nuclear Information System (INIS)

    On 8 August 1986 the Protocols to the South Pacific Nuclear Free Zone Treaty were adopted by the South Pacific Forum at its 17th session, in Suva. The attached texts of the Protocols were formally communicated to the Director General by the Director of the South Pacific Bureau for Economic Co-operation (SPEC) and are herewith being circulated to all Member States for their information pursuant to a request made by the Director of SPEC. Following the deposit of the eighth instrument of ratification, the South Pacific Nuclear Free Zone Treaty entered into force on 11 December 1986

  8. Automation of the University of the South Pacific Library and the Pacific Information Centre. A Report.

    Science.gov (United States)

    Ferrer, Daniel

    The Pacific Information Center (PIC) was established in 1983 to identify, collect, and record information about materials from and relating to the South Pacific region. The project involves sharing access and information among countries in this region. PIC, which works in conjunction with the University of the South Pacific (USP) Library, receives…

  9. Genetic control of immune response in carriers of ancestral haplotype 8.1: the study of chemotaxis.

    Science.gov (United States)

    Candore, Giuseppina; Balistreri, Carmela R; Campagna, Anna Maria; Colombo, Alfredo; Cuppari, Irene; Di-Carlo, Daniele; Grimaldi, Maria P; Orlando, Valentina; Piazza, Giuseppina; Vasto, Sonya; Lio, Domenico; Caruso, Calogero

    2006-11-01

    In all caucasian populations the association of an impressive number of autoimmune diseases with genes from the HLA-B8, DR3 haplotype that is part of the ancestral haplotype (AH) 8.1 HLA-A1, Cw7, B8, TNFAB*a2b3, TNFN*S, C2*C, Bf*s, C4A*Q0, C4B*1, DRB1*0301, DRB3*0101, DQA1*0501, DQB1*0201 has been reported by different research groups. This haplotype, which is more common in northern Europe, is also associated with a number of immune system dysfunctions in healthy subjects. Analyzing the data according to gender, some dysfunctions are observed in women but not in men, in agreement with the role of X-linked genes and/or estrogens in the development and progression of autoimmune diseases. It has been proposed that a small number of genes within the 8.1 AH modify immune responsiveness and hence affect multiple immunopathological diseases. In this article, we demonstrate that neutrophil chemotaxis is significantly decreased in carriers of this AH, suggesting that this impairment may also be related to the increased occurrence of autoimmune diseases in these individuals. PMID:17261794

  10. Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

    Science.gov (United States)

    Yeoh, Yun Kit; Sekiguchi, Yuji; Parks, Donovan H; Hugenholtz, Philip

    2016-04-01

    Candidate phylum TM6 is a major bacterial lineage recognized through culture-independent rRNA surveys to be low abundance members in a wide range of habitats; however, they are poorly characterized due to a lack of pure culture representatives. Two recent genomic studies of TM6 bacteria revealed small genomes and limited gene repertoire, consistent with known or inferred dependence on eukaryotic hosts for their metabolic needs. Here, we obtained additional near-complete genomes of TM6 populations from agricultural soil and upflow anaerobic sludge blanket reactor metagenomes which, together with the two publicly available TM6 genomes, represent seven distinct family level lineages in the TM6 phylum. Genome-based phylogenetic analysis confirms that TM6 is an independent phylum level lineage in the bacterial domain, possibly affiliated with the Patescibacteria superphylum. All seven genomes are small (1.0-1.5 Mb) and lack complete biosynthetic pathways for various essential cellular building blocks including amino acids, lipids, and nucleotides. These and other features identified in the TM6 genomes such as a degenerated cell envelope, ATP/ADP translocases for parasitizing host ATP pools, and protein motifs to facilitate eukaryotic host interactions indicate that parasitism is widespread in this phylum. Phylogenetic analysis of ATP/ADP translocase genes suggests that the ancestral TM6 lineage was also parasitic. We propose the name Dependentiae (phyl. nov.) to reflect dependence of TM6 bacteria on host organisms. PMID:26615204

  11. Food-Nonfood Discrimination in Ancestral Vertebrates: Gamete Cannibalism and the Origin of the Adaptive Immune System.

    Science.gov (United States)

    Corcos, D

    2015-11-01

    Adaptive immunity is a complex system that appeared twice in vertebrates (in gnathostomes and in jawless fish) although it is not required for invertebrate defence. The adaptive immune system is tightly associated with self-non-self discrimination, and it is now clear that this interplay is not limited to the prevention of autoreactivity. Micro-organisms are usually considered for their pathogenicity or symbiotic ability, but, for most small metazoans, they mainly constitute food. Vertebrates are characterized by feeding by predation on larger preys, when compared to their ancestors who were filter feeders and ate micro-organisms. Predation gives a strong selective advantage, not only due to the availability of new food resources but also by the ability to eliminate competitors for environmental resources (intraguild predation (IGP)). Unlike size-structured IGP, intraspecific predation of juveniles, zygotes or gametes can be detrimental for species fitness in some circumstances. The ability of individuals to recognize highly polymorphic molecules on the surface of gametes present in the plankton and so distinguish self versus non-self gametes might have constituted a strong selective advantage in intraspecific competition. Here, I propose the theory that the capacity to rearrange receptors has been selected in ancestral vertebrates as a consequence of this strong need for discriminating between hetero-cannibalism versus filial cannibalism. This evolutionary origin sheds light on presently unexplained features of the immune system, including the existence of regulatory T cells and of non-pathogenic natural autoimmunity. PMID:26286030

  12. What was the ancestral function of decidual stromal cells? A model for the evolution of eutherian pregnancy.

    Science.gov (United States)

    Chavan, Arun Rajendra; Bhullar, Bhart-Anjan S; Wagner, Günter P

    2016-04-01

    In human and mouse, decidual stromal cells (DSC) are necessary for the establishment (implantation) and the maintenance of pregnancy by preventing inflammation and the immune rejection of the semi-allograft conceptus. DSC originated along the stem lineage of eutherian mammals, coincidental with the origin of invasive placentation. Surprisingly, in many eutherian lineages decidual cells are lost after the implantation phase of pregnancy, making it unlikely that DSC are necessary for the maintenance of pregnancy in these animals. In order to understand this variation, we review the literature on the fetal-maternal interface in all major eutherian clades Euarchontoglires, Laurasiatheria, Xenarthra and Afrotheria, as well as the literature about the ancestral eutherian species. We conclude that maintaining pregnancy may not be a shared derived function of DSC among all eutherian mammals. Rather, we propose that DSC originated to manage the inflammatory reaction associated with invasive implantation. We envision that this happened in a stem eutherian that had invasive placenta but still a short gestation. We further propose that extended gestation evolved independently in the major eutherian clades explaining why the major lineages of eutherian mammals differ with respect to the mechanisms maintaining pregnancy. PMID:27016782

  13. Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure.

    Science.gov (United States)

    Basu, Analabha; Sarkar-Roy, Neeta; Majumder, Partha P

    2016-02-01

    India, occupying the center stage of Paleolithic and Neolithic migrations, has been underrepresented in genome-wide studies of variation. Systematic analysis of genome-wide data, using multiple robust statistical methods, on (i) 367 unrelated individuals drawn from 18 mainland and 2 island (Andaman and Nicobar Islands) populations selected to represent geographic, linguistic, and ethnic diversities, and (ii) individuals from populations represented in the Human Genome Diversity Panel (HGDP), reveal four major ancestries in mainland India. This contrasts with an earlier inference of two ancestries based on limited population sampling. A distinct ancestry of the populations of Andaman archipelago was identified and found to be coancestral to Oceanic populations. Analysis of ancestral haplotype blocks revealed that extant mainland populations (i) admixed widely irrespective of ancestry, although admixtures between populations was not always symmetric, and (ii) this practice was rapidly replaced by endogamy about 70 generations ago, among upper castes and Indo-European speakers predominantly. This estimated time coincides with the historical period of formulation and adoption of sociocultural norms restricting intermarriage in large social strata. A similar replacement observed among tribal populations was temporally less uniform. PMID:26811443

  14. Expression of segment polarity genes in brachiopods supports a non-segmental ancestral role of engrailed for bilaterians.

    Science.gov (United States)

    Vellutini, Bruno C; Hejnol, Andreas

    2016-01-01

    The diverse and complex developmental mechanisms of segmentation have been more thoroughly studied in arthropods, vertebrates and annelids-distantly related animals considered to be segmented. Far less is known about the role of "segmentation genes" in organisms that lack a segmented body. Here we investigate the expression of the arthropod segment polarity genes engrailed, wnt1 and hedgehog in the development of brachiopods-marine invertebrates without a subdivided trunk but closely related to the segmented annelids. We found that a stripe of engrailed expression demarcates the ectodermal boundary that delimits the anterior region of Terebratalia transversa and Novocrania anomala embryos. In T. transversa, this engrailed domain is abutted by a stripe of wnt1 expression in a pattern similar to the parasegment boundaries of insects-except for the expression of hedgehog, which is restricted to endodermal tissues of the brachiopod embryos. We found that pax6 and pax2/5/8, putative regulators of engrailed, also demarcate the anterior boundary in the two species, indicating these genes might be involved in the anterior patterning of brachiopod larvae. In a comparative phylogenetic context, these findings suggest that bilaterians might share an ancestral, non-segmental domain of engrailed expression during early embryogenesis. PMID:27561213

  15. Natural environments, ancestral diets, and microbial ecology: is there a modern "paleo-deficit disorder"? Part II.

    Science.gov (United States)

    Logan, Alan C; Katzman, Martin A; Balanzá-Martínez, Vicent

    2015-01-01

    Famed microbiologist René J. Dubos (1901-1982) was an early pioneer in the developmental origins of health and disease (DOHaD) construct. In the 1960s, he conducted groundbreaking research concerning the ways in which early-life experience with nutrition, microbiota, stress, and other environmental variables could influence later-life health outcomes. He recognized the co-evolutionary relationship between microbiota and the human host. Almost 2 decades before the hygiene hypothesis, he suggested that children in developed nations were becoming too sanitized (vs. our ancestral past) and that scientists should determine whether the childhood environment should be "dirtied up in a controlled manner." He also argued that oft-celebrated growth chart increases via changes in the global food supply and dietary patterns should not be equated to quality of life and mental health. Here in the second part of our review, we reflect the words of Dubos off contemporary research findings in the areas of diet, the gut-brain-axis (microbiota and anxiety and depression) and microbial ecology. Finally, we argue, as Dubos did 40 years ago, that researchers should more closely examine the relevancy of silo-sequestered, reductionist findings in the larger picture of human quality of life. In the context of global climate change and the epidemiological transition, an allergy epidemic and psychosocial stress, our review suggests that discussions of natural environments, urbanization, biodiversity, microbiota, nutrition, and mental health, are often one in the same. PMID:25889196

  16. Localization of Type 1 Diabetes susceptibility in the ancestral haplotype 18.2 by high density SNP mapping.

    Science.gov (United States)

    Santiago, Jose Luis; Li, Wentian; Lee, Annette; Martinez, Alfonso; Chandrasekaran, Alamelu; Fernandez-Arquero, Miguel; Khalili, Houman; de la Concha, Emilio G; Urcelay, Elena; Gregersen, Peter K

    2009-10-01

    Previous studies have suggested that the ancestral haplotype 18.2 (AH18.2) carries additional susceptibility gene to Type 1 Diabetes (T1D) on the Major Histocompatibility Complex (MHC). We analyzed 10 DR3/TNFa1b5 homozygous subjects in order to establish the conservation of the AH18.2 and then compared this conserved region with other DR3 haplotype, the AH8.1. The Illumina's HumanHap550 Bead chip was used to perform an extensive genotyping of the MHC region. The AH18.2 was highly conserved between DDR1 and HLA-DQA1 genes; therefore most probably the second susceptibility gene is located within this region. We can exclude the region centromeric to HLA-DRA gene and telomeric to DDR1 gene. A comparison between the AH18.2 and AH8.1 haplotypes showed that 233 SNPs were different in the aforementioned conserved region. These data suggest that the 1.65 Mb MHC region between DDR1 and HLA-DRA genes is likely to carry additional susceptibility alleles for T1D on the AH18.2 haplotype. PMID:19591919

  17. Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

    Directory of Open Access Journals (Sweden)

    Shigeki Nakagome

    Full Text Available Recent studies have reported discordant gene trees in the evolution of brown bears and polar bears. Genealogical histories are different among independent nuclear loci and between biparentally inherited autosomal DNA (aDNA and matrilineal mitochondrial DNA (mtDNA. Based on multi-locus genomic sequences from aDNA and mtDNA, we inferred the population demography of brown and polar bears and found that brown bears have 6 times (aDNA or more than 14 times (mtDNA larger population sizes than polar bears and that polar bear lineage is derived from within brown bear diversity. In brown bears, the effective population size ratio of mtDNA to aDNA was at least 0.62, which deviated from the expected value of 0.25, suggesting matriarchal population due to female philopatry and male-biased migration. These results emphasize that ancestral polymorphisms and sex-biased migration may have contributed to conflicting branching patterns in brown and polar bears across aDNA genes and mtDNA.

  18. Blood types in Pacific salmon

    Science.gov (United States)

    Ridgway, G.L.; Klontz, G.W.

    1961-01-01

    Intraspecific differences in erythrocyte antigens (blood types) were shown to occur in four species of Pacific salmon, the sockeye or red salmon (Oncorhynchus nerka), the chinook or king salmon (0. tshawytscha), the chum salmon (O. keta), and the pink salmon (O. gorbuscha). Antisalmon-erythrocyte sera prepared in rabbits and chickens were used after absorption of species-specific antibodies. Some of these blood types were shown to differ in their frequency of occurrence between different geographic races. In addition, isoimmunizations were conducted on one race of sockeye salmon. Antisera of seven different specificities were prepared and at least eight different patterns of antigenic composition were displayed by the cells tested.

  19. Pacific Northwest Resources Inventory Demonstration

    Science.gov (United States)

    Nichols, J. D.

    1976-01-01

    The Pacific Northwest Land Resource Inventory Demonstration project is designed to demonstrate to users from state and local agencies in Washington, Oregon, and Idaho the cost effective role that Landsat derived information can play in natural resource planning and management when properly supported by ground and aircraft data. The project has been organized into five main phases: (1) maps and overlays, (2) early digital image analysis, (3) demonstration of applications using interactive image analysis, (4) Landsat products and land resources information systems, and (5) documentation. The demonstration project has been applied to Washington forestry, water inventory in southern Idaho, and monitoring of tansy ragwort in western Oregon.

  20. Petrología y geoquímica de los granitoides peralumínicos de la Faja TIPA, en el borde occidental de Gondwana, sistema de Famatina, Argentina

    Directory of Open Access Journals (Sweden)

    Toselli, A. J.

    1996-08-01

    Full Text Available Main pretrological and geochemistry characteristics of the rocks of Copacabana, Paimán and Velasco Ranges are shown, constituent of the important deformative structure developed in the east border of Famatinian System. This structure is relationed with Ocloyic-Taconic Collision between Gondwana and Laurentia, during Upper Ordovicic-Lower Siluric and Lower Carbonic, in response to a compressive regimen with vergence to the East.En este trabajo se presentan las principales características petrográficas y geoquímicas de las rocas que constituyen las Sierra de Copacabana, flanco oriental de la Sierra de Paimán y extremo NW de la Sierra de Velasco, dentro de la importante estructura deformativa que se desarrolla en el borde oriental del Sistema de Famatina y da lugar a la Faja Deformada TIPA. Tales rocas corresponden a una tendencia evolutiva de características calcoalcalinas y son netamente peraluminosas, con presencia de minerales como biotita, muscovita, sillimanita, cianita, cordierita y granate. Esta estructura se vincularía con la colisión oclóyica-tacónica entre Gondwana y Laurentia (Dalla Salda el al., 1993 en niveles no muy profundos de la corteza, dentro de un ambiente tectónico transicional entre regiones de arco volcánico y sin-colisional. Este evento colisional habría tenido lugar entre el Ordovícico superior-Silúrico inferior y el Carbónico inferior, respondiendo a un régimen compresivo con vergencia al E.

  1. Atmospheric science: Pacific trade wind intensifier

    Science.gov (United States)

    Collier, Mark

    2016-08-01

    The unprecedented recent intensification of the Pacific trade winds cannot simply be explained by natural variability alone. Now research finds that the more local influence of sulfate aerosols of human and volcanic origin play a significant role, in addition to the Pacific's coupling to the Atlantic Ocean via the 'atmospheric bridge'.

  2. Diabetes and Asians and Pacific Islanders

    Science.gov (United States)

    ... diabetes per 100 population (2014) Asian American White Asian American/White Ratio Men 5.8 6.3 0.9 Women 5.7 5.3 1.1 Total 5.8 5.7 1.0 Source: CDC 2016. National Diabetes Surveillance ... Asian American/Pacific Islanders Non-Hispanic White Asian American/Pacific ...

  3. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    Aims & Scope Asian Pacific Journal of TropicalBiomedicine(APJTB) aims to set up and provide an international academic communication plaffom for physicians,medical scientisis,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges

  4. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding

  5. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    APJTB MonthlyAims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges

  6. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>APJTB Monthly Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public

  7. Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction

    DEFF Research Database (Denmark)

    Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin;

    2015-01-01

    infectious RNA transcripts. Full length sequencing of cDNA clones and deep sequencing of the parental population identified substitutions important for the observed phenotypes. The investigated cDNA clones were furthermore used as the basis for inferring the sequence of functional viruses. Since each unique......-fitness, functional cDNAs and may also pose problems for sequence-based analysis of viral evolution. To address these challenges we have performed a study of the evolution of classical swine fever virus (CSFV) using deep sequencing and analysis of 84 full-length cDNA clones, each representing individual genomes from...... clone must necessarily be the descendant of a functional ancestor, we hypothesized that it should be possible to produce functional clones by reconstructing ancestral sequences. To test this we used phylogenetic methods to infer two ancestral sequences, which were then reconstructed as cDNA clones...

  8. Clan, ancestral hall, and sacrifice in the Song Dynasty%宋代的宗族祠堂、祭祀及其它

    Institute of Scientific and Technical Information of China (English)

    游彪

    2007-01-01

    The Song Dynasty is the most important period in Chinese history in terms of the establishment of a new type of clan system. During the Song, Chinese social organization, at the grass-roots level, experienced a fundamental change.In the wake of the late-Tang collapse of the local power system, it was necessary for the Song to replace the ancestral lineage structure and develop a new system to adapt itself to the new circumstances brought on by drastic changes in its economy. Song Confucians played a vital part in the changes. Not only did they gradually solve the theoretical problems of the new type of clan organization, but they also developed many feasible and standard models. Eventually this model would gain even wider acceptance after the Yuan Dynasty with the rise of Neo-Confucianism. Thus, ancestral halls, serving as the major centers for the new clan activities, became prevalent among common people.

  9. Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species

    OpenAIRE

    McMillan, Vanessa E; Gutteridge, Richard J; Hammond-Kosack, Kim E.

    2014-01-01

    Background Ancestral wheat relatives are important sources of genetic diversity for the introduction of novel traits for the improvement of modern bread wheat. In this study the aim was to assess the susceptibility of 34 accessions of the diploid wheat Triticum monococcum (A genome) to Gaeumannomyces graminis var. tritici (Ggt), the causal agent of take-all disease. The second aim was to explore the susceptibility of tetraploid wheat (T. durum) and the B genome progenitor species Aegilops spe...

  10. Personal and Social Transformation in the Health Area through Education: A Brief Journey from the Ancestral Indigenous Wisdom to the Modern Tyranny of Healthiness

    OpenAIRE

    Andrés de Muller

    2015-01-01

    This paper aims at claiming the ancestral wisdom of indigenous people in the health area. It analyzes how health has been commodified in the interest of large companies (particularly those related to the pharmaceutical industry) to the detriment of a holistic definition of wellness through education. Furthermore, the concept of health as a right disagrees with such commodification or sale to the highest bidder, which prompts dehumanization of health services and public misinformation. The abu...

  11. The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora)

    OpenAIRE

    Beklemisheva, Violetta R.; Perelman, Polina L.; Lemskaya, Natalya A.; Kulemzina, Anastasia I.; Proskuryakova, Anastasia A.; Burkanov, Vladimir N.; Alexander S Graphodatsky

    2016-01-01

    Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae-monotypic family), near threatened Steller sea li...

  12. Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation

    Directory of Open Access Journals (Sweden)

    Adams Josephine C

    2006-04-01

    Full Text Available Abstract Background Thrombospondins (TSPs are evolutionarily-conserved, extracellular, calcium-binding glycoproteins with important roles in cell-extracellular matrix interactions, angiogenesis, synaptogenesis and connective tissue organisation. Five TSPs, designated TSP-1 through TSP-5, are encoded in the human genome. All but one have known roles in acquired or inherited human diseases. To further understand the roles of TSPs in human physiology and pathology, it would be advantageous to extend the repertoire of relevant vertebrate models. In general the zebrafish is proving an excellent model organism for vertebrate biology, therefore we set out to evaluate the status of TSPs in zebrafish and two species of pufferfish. Results We identified by bioinformatics that three fish species encode larger numbers of TSPs than vertebrates, yet all these sequences group as homologues of TSP-1 to -4. By phylogenomic analysis of neighboring genes, we uncovered that, in fish, a TSP-4-like sequence is encoded from the gene corresponding to the tetrapod TSP-5 gene. Thus, all TSP genes show conservation of synteny between fish and tetrapods. In the human genome, the TSP-1, TSP-3, TSP-4 and TSP-5 genes lie within paralogous regions that provide insight into the ancestral genomic context of vertebrate TSPs. Conclusion A new model for TSP evolution in vertebrates is presented. The TSP-5 protein sequence has evolved rapidly from a TSP-4-like sequence as an innovation in the tetrapod lineage. TSP biology in fish is complicated by the presence of additional lineage- and species-specific TSP paralogues. These novel results give deeper insight into the evolution of TSPs in vertebrates and open new directions for understanding the physiological and pathological roles of TSP-4 and TSP-5 in humans.

  13. Somatostatin signaling system as an ancestral mechanism: Myoregulatory activity of an Allatostatin-C peptide in Hydra.

    Science.gov (United States)

    Alzugaray, María Eugenia; Hernández-Martínez, Salvador; Ronderos, Jorge Rafael

    2016-08-01

    The coordination of physiological processes requires precise communication between cells. Cellular interactions allow cells to be functionally related, facilitating the maintaining of homeostasis. Neuropeptides functioning as intercellular signals are widely distributed in Metazoa. It is assumed that neuropeptides were the first intercellular transmitters, appearing early during the evolution. In Cnidarians, neuropeptides are mainly involved in neurotransmission, acting directly or indirectly on epithelial muscle cells, and thereby controlling coordinated movements. Allatostatins are a group of chemically unrelated neuropeptides that were originally characterized based on their ability to inhibit juvenil hormone synthesis in insects. Allatostatin-C has pleiotropic functions, acting as myoregulator in several insects. In these studies, we analyzed the myoregulatory effect of Aedes aegypti Allatostatin-C in Hydra sp., a member of the phylum Cnidaria. Allatostatin-C peptide conjugated with Qdots revealed specifically distributed cell populations that respond to the peptide in different regions of hydroids. In vivo physiological assays using Allatostatin-C showed that the peptide induced changes in shape and length in tentacles, peduncle and gastrovascular cavity. The observed changes were dose and time dependent suggesting the physiological nature of the response. Furthermore, at highest doses, Allatostatin-C induced peristaltic movements of the gastrovascular cavity resembling those that occur during feeding. In silico search of putative Allatostatin-C receptors in Cnidaria showed that genomes predict the existence of proteins of the somatostatin/Allatostatin-C receptors family. Altogether, these results suggest that Allatostatin-C has myoregulatory activity in Hydra sp, playing a role in the control of coordinated movements during feeding, indicating that Allatostatin-C/Somatostatin based signaling might be an ancestral mechanism. PMID:27288244

  14. Nutrition communication in the Pacific.

    Science.gov (United States)

    White, Leticia; Saweri, Wila

    2007-09-01

    This paper summarises the findings of a scoping study to analyse and guide nutrition communication in some countries in the Pacific region. Nutrition is fundamental to achieving good health and preventing the rising prevalence of non-communicable disease. Dietary patterns are influenced by many factors and complex interactions, such as income, food prices, individual preference and beliefs, cultural traditions, as well as geographical, environmental and social factors. These interactions, the quantitative and qualitative changes in the diet, and the accompanying lifestyle changes seen in recent years, make a collaborative approach to behaviour change essential. This study suggests that by supporting nutritionists to promote nutrition, improve public awareness and by addressing key areas influencing nutrition communication, gains towards improving public health can be made at a regional level. PMID:19588610

  15. Surgeons and suture zones: Hybridization among four surgeonfish species in the Indo-Pacific with variable evolutionary outcomes

    KAUST Repository

    DiBattista, Joseph

    2016-04-30

    Closely related species can provide valuable insights into evolutionary processes through comparison of their ecology, geographic distribution and the history recorded in their genomes. In the Indo-Pacific, many reef fishes are divided into sister species that come into secondary contact at biogeographic borders, most prominently where Indian Ocean and Pacific Ocean faunas meet. It is unclear whether hybridization in this contact zone represents incomplete speciation, secondary contact, an evolutionary dead-end (for hybrids) or some combination of the above. To address these issues, we conducted comprehensive surveys of two widely-distributed surgeonfish species, Acanthurus leucosternon (N = 141) and A. nigricans (N = 412), with mtDNA cytochrome b sequences and ten microsatellite loci. These surgeonfishes are found primarily in the Indian and Pacific Oceans, respectively, but overlap at the Christmas and Cocos-Keeling Islands hybrid zone in the eastern Indian Ocean. We also sampled the two other Pacific members of this species complex, A. achilles (N = 54) and A. japonicus (N = 49), which are known to hybridize with A. nigricans where their ranges overlap. Our results indicate separation between the four species that range from the recent Pleistocene to late Pliocene (235,000 to 2.25 million years ago). The Pacific A. achilles is the most divergent (and possibly ancestral) species with mtDNA dcorr ≈ 0.04, whereas the other two Pacific species (A. japonicus and A. nigricans) are distinguishable only at a population or subspecies level (ΦST = 0.6533, P < 0.001). Little population structure was observed within species, with evidence of recent population expansion across all four geographic ranges. We detected sharing of mtDNA haplotypes between species and extensive hybridization based on microsatellites, consistent with later generation hybrids but also the effects of allele homoplasy. Despite extensive introgression, 98% of specimens had concordance between mt

  16. The IAEA '97 Pacific Ocean expedition

    International Nuclear Information System (INIS)

    The International Atomic Energy Agency's Marine Environment Laboratory (IAEA-MEL) started in 1995 a five-year project 'Research on World-wide Marine Radioactivity', generously supported by the Government of Japan. In the framework of the project, IAEA-MEL conducted the 'IAEA '97 Pacific Ocean Expedition' to the NW Pacific Ocean from 21 October to 20 November, 1997. The objectives of the expedition were to provide new data on the current marine radioactivity in order to compare them with data sets obtained during national and international surveys at sites used for radioactive waste dumping or nuclear bomb testing in the NW Pacific Ocean and its marginal seas

  17. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>Aims&Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding,preventing and controlling the dramatic global emergence and reemergence of infectious diseases in the Asian Pacific region.APJTB publishes new findings in both basic and clinical(including modern,traditional and epidemiological)research

  18. MORPHOLOGICAL AND GENETIC VARIATION IN THE POPULATIONS OF SARGASSUM HEMIPHYLLUM (PHAEOPHYCEAE) IN THE NORTHWESTERN PACIFIC(1).

    Science.gov (United States)

    Cheang, Chi Chiu; Chu, Ka Hou; Ang, Put O

    2008-08-01

    Difficulty in species identification of Sargassum (Sargassaceae, Fucales) is partly attributed to the high polymorphism among its individuals and populations. This study aimed at assessing morphological and genetic variations in two varieties, var. hemiphyllum J. Agardh and var. chinense J. Agardh, of Sargassum hemiphyllum (Turner) C. Agardh, a widely distributed species in the northwestern Pacific. We investigated 26 measurable, five numerical, and 33 categorical morphological parameters associated with different branching levels of specimens from each of six localities within its distribution range using cluster analysis (CA) and principal coordinate analysis (PCoA). Leaf size of the primary and secondary branching levels and the vesicle size of the secondary branches of the specimens examined were determined to be the most important morphological parameters that were significantly different among populations. Change in leaf and vesicle length of individuals among the six populations followed a latitudinal gradient, with smaller leaves and vesicles associated with northern populations and larger ones in the southern populations. The possible influence of the gradual change in sea surface temperatures (SSTs) along this gradient in the northwestern Pacific on leaf and vesicle morphologies of this species was suggested. PCR-RFLP analysis of the RUBISCO spacer in the chloroplast genome revealed two distinct and highly homogenous clades, a China clade and a Japan-Korea clade, which corresponded to var. chinense and var. hemiphyllum, respectively. The formation of refugia along the "Paleo-coast" in the East China Sea during glacial periods is suggested to have led to the vicariance of ancestral populations of S. hemiphyllum and thus to have promoted genetic differentiation. The massive freshwater outflow of the Yellow and Yangtze rivers may continue to act as a barrier, prolonging the allopatric distribution of the two varieties. PMID:27041602

  19. ¿Con o sin ancestros?: vigencia de lo ancestral en la Amazonía peruana

    Directory of Open Access Journals (Sweden)

    Thomas Mouriès

    2014-06-01

    Full Text Available La existencia o no de ancestros en la Amazonía indígena ha sido objeto de importantes debates. Sin embargo, los líderes de la región no dudan en llamar ‘ancestrales’ sus saberes, normas o territorios, en un sentido que, desde un punto de vista académico, puede parecer enigmático. «Ancestrales, pero… ¿con o sin ancestros?», preguntaría entonces, confuso, el antropólogo. En este artículo propongo aportar elementos de respuesta a esta pregunta a través del caso peruano. Primero analizo cómo los líderes indígenas amazónicos, conectándose al circuito del derecho internacional, adoptan la noción jurídica de ‘posesión ancestral’ del territorio para adaptarla al ámbito político. Este planteamiento rinde cuenta de la generalización y uniformización reciente del vocablo ‘ancestral’ pero deja pendiente el problema de su eventual articulación con las cosmologías indígenas que pretende reflejar. Por eso, en la segunda parte, intento sondear sobre la pertinencia de la categoría de ‘ancestro’ en la Amazonía indígena, recordando brevemente el debate académico para ir definiendo en qué medida esta categoría puede cobrar sentido. A partir del testimonio de un experimentado líder awajún, la tercera parte permite, entonces, volver más explícitos los diferentes sentidos y planos referenciales que despliega la referencia a lo ancestral, mostrando cómo los indígenas amazónicos no solo adoptan elementos conceptuales y discursivos externos, sino que al mismo tiempo los transforman a partir de sus propias singularidades cosmológicas y perspectivas políticas.

  20. ABO (histo) blood group phenotype development and human reproduction as they relate to ancestral IgM formation: A hypothesis.

    Science.gov (United States)

    Arend, Peter

    2016-01-01

    The formation of a histo (blood) group) ABO phenotype and the exclusion of an autoreactive IgM or isoagglutinin activity arise apparently in identical glycosylation of complementary domains on cell surfaces and plasma proteins. The fundamental O-glycan emptiness of the circulating IgM, which during the neonatal amino acid sequencing of the variable regions is exerting germline-specific O-GalNAc glycan-reactive serine/threonine residues that in the plasma of the adult human blood group O individuals apparently remain associated with the open glycosidic sites on the ABOH convertible red cell surface, must raise suggestions on a transient expression of developmental glycans, which have been "lost" over the course of maturation. In fact, while the mammalian non-somatic, embryogenic stem cell (ESC)- germ cell (GC) transformation is characterized by a transient and genetically as-yet-undefined trans-species-functional O-GalNAc glycan expression, in the C57BL/10 mouse such expression was potentially identified in growth-dependent, blood group A-like GalNAc glycan-bearing, ovarian glycolipids complementary with the syngeneic anti-A reactive IgM, which does not appear in early ovariectomized animals. This non-somatically encoded, polyreactive, ancestral IgM molecule has not undergone clonal selection and does primarily not differentiate between self and non-self and might, due to amino acid hydroxyl groups, highly suggest substrate competition with subsequent O-glycosylations in ongoing ESC-GC transformations and affecting GC maturation. However, the membrane-bound somatic N/O-glycotransferases, which initiate, after formation of the zygote, the complex construction of the human ABO phenotypes in the trans cisternae of the Golgi apparatus, are associated and/or completed with soluble enzyme versions exerting identical specificities in plasma and likely competing vice versa by glycosylation of neonatal IgM amino acids, where they suggest to accomplish the clearance of anti

  1. The Trans-Pacific Partnership and Asia-Pacific Integration: Policy Implications

    OpenAIRE

    Petri, Peter A.; Michael Plummer

    2012-01-01

    The Trans-Pacific Partnership (TPP) agreement, now in negotiation among nine Asia-Pacific countries, could yield annual global income gains of $295 billion (including $78 billion for the United States) and offers a pathway to free trade in the Asia-Pacific with potential gains of $1.9 trillion. The TPP is a crucial step on what is becoming a "Trans-Pacific track" of trade agreements, and its expected template promises to be unusually productive because it offers opportunities for the leading ...

  2. Characterization of GnRH-related peptides from the Pacific oyster Crassostrea gigas.

    Science.gov (United States)

    Bigot, Laetitia; Zatylny-Gaudin, Céline; Rodet, Franck; Bernay, Benoit; Boudry, Pierre; Favrel, Pascal

    2012-04-01

    Gonadotropin-releasing hormone (GnRH), a key neuropeptide regulating reproduction in vertebrates has now been characterized in a number of non-vertebrate species. Despite the demonstration of its ancestral origin, the structure and the function of this family of peptides remain poorly known in species as distant as lophotrochozoans. In this study, two GnRH-related peptides (Cg-GnRH-a and CgGnRH-G) were characterized by mass spectrometry from extracts of the visceral ganglia of the Pacific oyster Crassostrea gigas. These peptides showed a high degree of sequence identity with GnRHs of other mollusks and annelids and to a lesser extent with those of vertebrates or with AKH and corazonins of insects. Both the mature peptides and the transcript encoding the precursor protein were exclusively expressed in the visceral ganglia. Significant differences in transcriptional activity of Cg-GnRH encoding gene were recorded in the ganglia along the reproductive cycle and according to trophic conditions with a higher level in fed animals compared to starved animals. This suggests the involvement of Cg-GnRHs as synchronizers of nutritional status with energy requirements during reproduction in oyster. Evidence for a role of Cg-GnRHs as neuroregulators and as neuroendocrine factors in bivalve is discussed. PMID:22306476

  3. A holistic picture of Austronesian migrations revealed by phylogeography of Pacific paper mulberry.

    Science.gov (United States)

    Chang, Chi-Shan; Liu, Hsiao-Lei; Moncada, Ximena; Seelenfreund, Andrea; Seelenfreund, Daniela; Chung, Kuo-Fang

    2015-11-01

    The peopling of Remote Oceanic islands by Austronesian speakers is a fascinating and yet contentious part of human prehistory. Linguistic, archaeological, and genetic studies have shown the complex nature of the process in which different components that helped to shape Lapita culture in Near Oceania each have their own unique history. Important evidence points to Taiwan as an Austronesian ancestral homeland with a more distant origin in South China, whereas alternative models favor South China to North Vietnam or a Southeast Asian origin. We test these propositions by studying phylogeography of paper mulberry, a common East Asian tree species introduced and clonally propagated since prehistoric times across the Pacific for making barkcloth, a practical and symbolic component of Austronesian cultures. Using the hypervariable chloroplast ndhF-rpl32 sequences of 604 samples collected from East Asia, Southeast Asia, and Oceanic islands (including 19 historical herbarium specimens from Near and Remote Oceania), 48 haplotypes are detected and haplotype cp-17 is predominant in both Near and Remote Oceania. Because cp-17 has an unambiguous Taiwanese origin and cp-17-carrying Oceanic paper mulberries are clonally propagated, our data concur with expectations of Taiwan as the Austronesian homeland, providing circumstantial support for the "out of Taiwan" hypothesis. Our data also provide insights into the dispersal of paper mulberry from South China "into North Taiwan," the "out of South China-Indochina" expansion to New Guinea, and the geographic origins of post-European introductions of paper mulberry into Oceania. PMID:26438853

  4. Pacific Islands Climate Change Virtual Library

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Virtual Library provides access to web based climate variability and climate change information and tools relevant to the Pacific Islands including case...

  5. Outbreak Investigations in the Western Pacific

    Directory of Open Access Journals (Sweden)

    Michelle McPherson

    2012-12-01

    Full Text Available In this issue we introduce a new article type – the outbreak investigation report – with our theme Outbreak investigations in the Western Pacific Region. This new article type allows for concise reports on outbreak investigations and expands the role of the Western Pacific Surveillance and Response Journal (WPSAR as a regional information-sharing platform, as per the Asia Pacific Strategy for Emerging Diseases (APSED 2010 in line with the International Health Regulation (2005. Timely sharing of outbreak investigations may be useful in informing public health action across the Region. We received 11 outbreak investigation report submissions and one original research of an outbreak investigation from six countries and areas within the World Health Organization’s Western Pacific Region.

  6. 1- HARPs of the Pacific Islands Region

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains information on acoustic recordings of cetaceans collected from areas within the Pacific Islands Region since 2006. In collaboration with...

  7. PODs cruise - Pacific Orcinus Distrbution Survey

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Orcinus spp. occur in the Pacific Ocean throughout the West Coast of North America. Data concerning their precise locations and abundance are critical to...

  8. Agriculture and biotechnology in Pacific countries.

    Science.gov (United States)

    Shigaki, Toshiro

    2014-01-01

    The Pacific countries are small in land mass and therefore represent one of the most fragile ecosystems. Due to the isolation of these island counties, these are home to unique species of plants and animals as well as crop varieties and landraces. Biosafety issues in the Pacific countries, therefore, require special attention to take these factors into account. The issues are shared with other small island nations such as the Caribbean countries. Although most Pacific countries do not have scientific capacity to develop genetically modified organisms (GMOs), they are inadvertently introduced from the developed world. As the countries do not have appropriate capacity to monitor the introduction and commerce of GMO's, it is imperative to establish biosafety legislation and capacity by pooling the resources within the Pacific countries. PMID:25412740

  9. Australia's role in Pacific energy trade

    International Nuclear Information System (INIS)

    This paper discusses Australia's resources and the expansion of its steaming coal exports. The author reviews Australia's development of its natural gas resources and future prospects for exporting to the Pacific region

  10. Eastern Pacific Ocean Purse-seine Fishery

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains vessel logbook and landings data sets from U.S.A.-flagged purse-seine vessels fishing in the Eastern Pacific Ocean (EPO). These purse seiners...

  11. Food irradiation seminar: Asia and the Pacific

    International Nuclear Information System (INIS)

    The report covers the Seminar for Asia and the Pacific on the practical application of food irradiation. The seminar assessed the practical application of food irradiation processes, commercial utilisation and international trade of irradiated food

  12. Culturally Speaking: Asian Pacific American Heritage Month

    Science.gov (United States)

    York, Sherry

    2004-01-01

    The celebration of the Asian Pacific American heritage month is to be held in May 2004. The librarians are advised to include authentic literature by and about Asian Americans for cross-cultural understanding.

  13. THE "COMFORT WOMEN" OF THE PACIFIC WAR

    OpenAIRE

    JULIA YURI OKAMOTO

    2013-01-01

    During the pacific war, about 80 to 200 thousand women were mobilized by the Japanese imperial army to sexually serve its soldiers, in one of world’s largest cases of human trafficking. Most of the victims, euphemistically known as "comfort women", came from Korea, Japan's colony at the time, and was attracted by false promises of employment or simply kidnapped by Japanese troops. Taken to military brothels throughout the pacific, they were subjected to repeated rape and beatings. Some of the...

  14. The US Pivot Towards Asia-Pacific

    DEFF Research Database (Denmark)

    Ulrich, Philip Christian

    An analysis of the US new Asia-Pacific strategy. The brief seeks to set the new strategy in the context of American foreign policy since the end of the Cold War.......An analysis of the US new Asia-Pacific strategy. The brief seeks to set the new strategy in the context of American foreign policy since the end of the Cold War....

  15. Pacific Trade Deal Faces Tough Choices

    Institute of Scientific and Technical Information of China (English)

    Financial Times

    2011-01-01

    @@ The annual meeting of the Asia-Pacific Economic Cooperation (APEC) forum in Hawaii will have something more concrete to focus on than the usual bromides about extending free trade in the region. Barack Obama, the host, will use the occasion to laud progress in the "trans-Pacific partnership" (TPP), a nascent trade deal aiming to knit together a coalition including the US, Chile, Australia, Vietnam and Malaysia.

  16. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>APJTB Monthly Aims&Scope Asian Pacific Jounrnal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges

  17. 1997 Pacific Northwest Loads and Resources Study.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1997-12-01

    The 1997 White Book is presented in two documents: (1) this summary of Federal system and Pacific Northwest region loads and resources; and (2) a technical appendix detailing the loads and resources for each major Pacific Northwest generating utility. Data detailing Pacific Northwest non-utility generating (NUG) resources is also available upon request. This analysis updates the 1996 pacific Northwest Loads and Resources Study, published in December 1996. In this loads and resources study, resource availability is compared with a medium forecast of electricity consumption. This document analyzes the Pacific Northwest`s projected loads and available generating resources in two parts: (1) the loads and resources of the Federal system, for which BPA is the marketing agency; and (2) the larger Pacific Northwest regional power system which includes loads and resources in addition to the Federal system. This study presents the Federal system and regional analyses for the medium load forecast. This analysis projects the yearly average energy consumption and resource availability for Operating Years (OY) 1998--99 through 2007--08.

  18. Asia-pacific LNG outlook

    International Nuclear Information System (INIS)

    Full text: There are powerful drivers at work in the Asia-Pacific region for clean and affordable energy. Liquefied Natural Gas (LNG) is providing a vital solution to this need. With demand in the region expected to grow from 70 million tonnes per annum to 110 million tonnes per annum by 2010, there are significant opportunities for the Australian natural gas industry and the country. The North West Shelf Venture, Australia's only LNG producer, currently provides some 7.5 million tonnes of LNG to Japanese customers. On 2 April 2001 a 50% expansion in LNG production was announced. The A$2.4 billion expansion project will be ready for start up in mid 2004 and will supply additional LNG to the Japanese customers. This increased demand and supply comes on the back of significant restructuring of the Japanese energy market. In addition to Japan, supply opportunities for LNG from Australia are emerging in China, Korea and Taiwan and the expectation is that there will be an increased reliance on LNG as an energy source. The challenge for Australian companies will be to ensure that opportunities are maximised for current and future LNG producers. David Maxwell, General Manager Commercial of Woodside Energy Limited, Operator of the North West Shelf Venture, will explore the current state of the LNG market, the forces at work in this industry and the outlook for LNG in the region. Copyright (2002) Institution of Chemical Engineers in Australia

  19. Renewable Energy Country Profiles. Pacific

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2012-09-15

    The IRENA Renewable Energy Country Profiles take stock of the latest development of renewable energy in two regions where renewable energy can make a significant contribution to combat climate change and bring modern energy services to everyone: Africa and the Pacific. These two regions are presented separately in this volume and its sister publication. The country profiles combine elements of IRENA analysis with the latest information available from a vast array of sources in order to give a brief yet comprehensive and up-to-date picture of the situation of renewable energy that includes energy supply, electrical capacity, energy access, policies, targets, investment climate, projects and endowment in renewable energy resources. Because of the different timelines of these sources, data presented here refer to years between 2008 and 2012. Data availability also differs from country to country, which makes comparison with a wider regional group possible only for the year for which figures are available for all the members of the group; while this may not be the most recent year, the differences between countries, regions and the world remain striking. The current country profiles are just a starting point; they will be extended upon with new indicators to make them more informative, and maintained as a live product on the IRENA website as a key source of information on renewable energy.

  20. Zonal displacement of western Pacific warm pool and zonal wind anomaly over the Pacific Ocean

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The thermal condition anomaly of the western Pacific warm pool and its zonal displacement have very important influences on climate change in East Asia and even the whole world.However, the impact of the zonal wind anomaly over the Pacific Ocean on zonal displacement of the warm pool has not yet been analyzed based on long-term record. Therefore, it is important to study the zonal displacement of the warm pool and its response to the zonal wind anomaly over the equatorial Pacific Ocean. Based on the NCDC monthly averaged SST (sea surface temperature) data in 2°×2° grid in the Pacific Ocean from 1950 to 2000, and the NCEP/NCAR global monthly averaged 850 hPa zonal wind data from 1949 to 2000, the relationships between zonal displacements of the western Pacific warm pool and zonal wind anomalies over the tropical Pacific Ocean are analyzed in this paper. The results show that the zonal displacements are closely related to the zonal wind anomalies over the western, central and eastern equatorial Pacific Ocean. Composite analysis indicates that during ENSO events, the warm pool displacement was trigged by the zonal wind anomalies over the western equatorial Pacific Ocean in early stage and the process proceeded under the zonal wind anomalies over the central and eastern equatorial Pacific Ocean unless the wind direction changes. Therefore, in addition to the zonal wind anomaly over the western Pacific, the zonal wind anomalies over the central and eastern Pacific Ocean should be considered also in investigation the dynamical mechanisms of the zonal displacement of the warm pool.

  1. Pre-and post-Missoula flood geomorphology of the Pre-Holocene ancestral Columbia River Valley in the Portland forearc basin, Oregon and Washington, USA

    Science.gov (United States)

    Peterson, Curt D.; Minor, Rick; Peterson, Gary L.; Gates, Edward B.

    2011-06-01

    Geomorphic landscape development in the pre-Holocene ancestral Columbia River Valley (1-5 km width) in the Portland forearc basin (~ 50 km length) is established from depositional sequences, which pre-date and post-date the glacial Lake Missoula floods. The sequences are observed from selected borehole logs (150 in number) and intact terrace soil profiles (56 in number) in backhoe trenches. Four sequences are widespread, including (1) a vertically aggraded Pleistocene alluvial plain, (2) a steep sided valley that is incised (125-150 m) into the Pleistocene gravel plain, (3) Missoula flood terraces (19-13 ka) abandoned on the sides of the ancestral valley, and (4) Holocene flooding surfaces (11-8 ka) buried at 70-30 m depth in the axial Columbia River Valley. Weathering rims and cementation are used for relative dating of incised Pleistocene gravel units. Soil development on the abandoned Missoula flood terraces is directly related to terrace deposit lithology, including thin Bw horizons in gravel, irregular podzols in sand, and multiple Bw horizons in thicker loess-capping layers. Radiocarbon dating of sand and mud alluvium in the submerged axial valley ties Holocene flooding surfaces to a local sea level curve and establishes Holocene sedimentation rates of 1.5 cm year- 1 during 11-9 ka and 0.3 cm year- 1 during 9-0 ka. The sequences of Pleistocene gravel aggradation, river valley incision, cataclysmic Missoula flooding, and Holocene submergence yield complex geomorphic landscapes in the ancestral lower Columbia River Valley.

  2. Personal and Social Transformation in the Health Area through Education: A Brief Journey from the Ancestral Indigenous Wisdom to the Modern Tyranny of Healthiness

    Directory of Open Access Journals (Sweden)

    Andrés de Muller

    2015-09-01

    Full Text Available This paper aims at claiming the ancestral wisdom of indigenous people in the health area. It analyzes how health has been commodified in the interest of large companies (particularly those related to the pharmaceutical industry to the detriment of a holistic definition of wellness through education. Furthermore, the concept of health as a right disagrees with such commodification or sale to the highest bidder, which prompts dehumanization of health services and public misinformation. The abundance of self-proclaimed gurus or healers who appeal to autosuggestion contributes both to confusion and to an unhealthy cult of healthiness.

  3. The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study

    OpenAIRE

    Hov, Johannes R; Zhong, Huanzi; Qin, Bingcai; Anmarkrud, Jarl Andreas; Holm, Kristian; Franke, Andre; Benedicte A Lie; Karlsen, Tom H.

    2015-01-01

    Multiple immune-related genes are encoded in the HLA complex on chromosome 6p21. The 8.1 ancestral haplotype (AH8.1) include the classical HLA alleles HLA-B*08:01 and HLA-DRB1*03:01, and has been associated with a large number of autoimmune diseases, but the underlying mechanisms for this association are largely unknown. Given the recently established links between the gut microbiota and inflammatory diseases, we hypothesized that the AH8.1 influences the host gut microbial community composit...

  4. Magmatic evolution in the N-Gondwana margin related to the opening of the Rheic Ocean—evidence from the Upper Parautochthon of the Galicia-Trás-os-Montes Zone and from the Central Iberian Zone (NW Iberian Massif)

    Science.gov (United States)

    Dias da Silva, Ícaro; Díez Fernández, Rubén; Díez-Montes, Alejandro; González Clavijo, Emilio; Foster, David A.

    2016-06-01

    LA-MC-ICP-MS U-Pb zircon ages and whole-rock geochemical data obtained from volcanic rocks erupted in the northern margin of Gondwana provide new insights on the polyphase magmatic evolution of the NW Iberian domain during the establishment of passive margin conditions in Lower Paleozoic times. The U-Pb data show crystallization ages of ca. 455 Ma for two calc-alkaline rhyolites sampled in the Upper Parautochthon of the eastern Galicia—Trás-os-Montes Zone (GTMZ) and for an intraplate basalt intruded into Middle Ordovician slates of the autochthonous series of the Central Iberian Zone (CIZ). Together with previous data, the ages obtained reveal a periodic magmatic activity across the northern Gondwana margin during the Lower Paleozoic, which is comparable to that observed in NE Iberia and in other massifs of the Mediterranean realm. Both geochronological and geochemical data reinforce paleontological and stratigraphic evidences for paleogeographic proximity between these domains and contribute to the recognition of extensional-related magmatism along the northern margin of Central Gondwana associated with the opening of the Rheic Ocean.

  5. 78 FR 46325 - Pacific Fishery Management Council (Pacific Council); Public Meeting

    Science.gov (United States)

    2013-07-31

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC785 Pacific Fishery Management Council (Pacific... to dial the following toll-free number and, when requested, the access code for the...

  6. Out of the Pacific and back again: the matrilineal history of Pacific killer whale ecotypes

    DEFF Research Database (Denmark)

    Foote, Andrew David; Morin, PA; JW, Durban;

    2011-01-01

    reconstructions and a clinal decrease in diversity suggest a North Pacific to North Atlantic founding event, and the later return of killer whales to the North Pacific. Therefore, ecological divergence could have occurred during the allopatric phase through drift or selection and/or may have either commenced or...

  7. 78 FR 33240 - International Fisheries; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean

    Science.gov (United States)

    2013-06-04

    ... proposed rule in the Federal Register (76 FR 560790) to implement Resolution C-12-09 of the IATTC by... central Pacific Ocean. In 2011, NMFS determined overfishing is occurring on Pacific bluefin tuna (76 FR... overexploitation of these stocks and to promote sustainable fisheries. Current IATTC membership includes:...

  8. Tracing the origin and geographic distribution of an ancestral form of the modern human Y chromosome Reconstrucción del origen y distribución geográfica de una forma ancestral del cromosoma Y del hombre moderno

    OpenAIRE

    Bravi, Claudio M.; GRACIELA BAILLIET; VERÓNICA L MARTÍNEZ-MARIGNAC; Bianchi, Nestor O.

    2001-01-01

    We screened a total of 841 Y chromosomes representing 36 human populations of wide geographical distribution for the presence of a Y-specific Alu insert (YAP+ chromosomes). The Alu element was found in 77 cases. We tested five biallelic and eight polyallelic markers in 70 out of the 77 YAP+ chromosomes. We could identify the existence of a hierarchical and chronological structuring of ancestral and derived YAP+ lineages giving rise to four haplogroups, 14 subhaplogroups and 60 haplotypes. Mor...

  9. Terminal suturing of Gondwana along the southern margin of South China Craton: Evidence from detrital zircon U-Pb ages and Hf isotopes in Cambrian and Ordovician strata, Hainan Island

    Science.gov (United States)

    Xu, Yajun; Cawood, Peter A.; Du, Yuansheng; Zhong, Zengqiu; Hughes, Nigel C.

    2014-12-01

    Hainan Island, located near the southern end of mainland South China, consists of the Qiongzhong Block to the north and the Sanya Block to the south. In the Cambrian, these blocks were separated by an intervening ocean. U-Pb ages and Hf isotope compositions of detrital zircons from the Cambrian succession in the Sanya Block suggest that the unit contains detritus derived from late Paleoproterozoic and Mesoproterozoic units along the western margin of the West Australia Craton (e.g., Northampton Complex) or the Albany-Fraser-Wilkes orogen, which separates the West Australia and Mawson cratons. Thus, in the Cambrian the Sanya Block was not part of the South China Craton but rather part of the West Australian Craton and its environs. In contrast, overlying Late Ordovician strata display evidence for input of detritus from the Qiongzhong Block, which constituted part of the southeastern convergent plate margin of the South China Craton in the early Paleozoic. The evolving provenance record of the Cambrian and Ordovician strata suggests that the juxtaposition of South China and West Australian cratons occurred during the early to mid-Ordovician. The event was linked with the northern continuation of Kuungan Orogeny, with South China providing a record of final assembly of Gondwana.

  10. Asia-Pacific lube oil markets

    International Nuclear Information System (INIS)

    An overview of the Asia-Pacific (AP) lubricating oils market, its special characteristics, and its role in the global economy are presented. In the 'boom and bust' years of 1997-1999, the Asia-Pacific market was even bigger then the US market. For the short-term, the scenario is surplus capacity and poor margins, but in the long term there is enormous potential for growth. How fuel demand and quality is related to engine type is discussed. The three basic grades of baseoils are described, and the Asia-Pacific lube demand and the Asia-Pacific lube oil supply are discussed. There are 15 diagrams giving data on: (i) finished lubes in world markets as a percentage of total; (ii) how lube demand follows GDP per capita in Asia; (iii) AP baseoil capacity relationships; (iv) AP baseoil disposition by end use; (v) AP changing shares of baseoil demand; (vi) AP finished lube demand by subregion; (vii) AP finished lube demand growth, indexed; (viii) AP baseoil capacity by region; Singapore baseoil vs. Dubai crude prices, 1992-99; (ix) Singapore baseoil vs. crude prices, 1992-99; (x) AP baseoil deficit moved to surplus; (xi) AP baseoil production; (xii) East Asia net percentage change in lube sales, 1997-1999. (xiii) Southeast Asia net percentage change in lube sales, 1997-1999; (xiv) South East Asia and Australia net percentage change in lube sales, 1997-1999 and (xv) Asia-Pacific major lube marketers

  11. Influenza vaccines: an Asia-Pacific perspective.

    Science.gov (United States)

    Jennings, Lance C

    2013-11-01

    This article provides an overview of some aspects of seasonal, pre-pandemic and pandemic influenza vaccines and initiatives aimed to increase influenza vaccine use within the Asia-Pacific region. Expanding the use of influenza vaccines in the Asia-Pacific region faces many challenges. Despite the recent regional history for the emergence of novel viruses, SARS, the H5N1 and H7N9, and the generation of and global seeding of seasonal influenza viruses and initiatives by WHO and other organisations to expand influenza awareness, the use of seasonal influenza vaccines remains low. The improvement in current vaccine technologies with the licensing of quadrivalent, live-attenuated, cell culture-based, adjuvanted and the first recombinant influenza vaccine is an important step. The development of novel influenza vaccines able to provide improved protection and with improved manufacturing capacity is also advancing rapidly. However, of ongoing concern are seasonal influenza impact and the low use of seasonal influenza vaccines in the Asia-Pacific region. Improved influenza control strategies and their implementation in the region are needed. Initiatives by the World Health Organization (WHO), and specifically the Western Pacific Regional Office of WHO, are focusing on consistent vaccine policies and guidelines in countries in the region. The Asian-Pacific Alliance for the Control of Influenza (APACI) is contributing through the coordination of influenza advocacy initiates. PMID:24215381

  12. δ-Conotoxin SuVIA suggests an evolutionary link between ancestral predator defence and the origin of fish-hunting behaviour in carnivorous cone snails.

    Science.gov (United States)

    Jin, Ai-Hua; Israel, Mathilde R; Inserra, Marco C; Smith, Jennifer J; Lewis, Richard J; Alewood, Paul F; Vetter, Irina; Dutertre, Sébastien

    2015-07-22

    Some venomous cone snails feed on small fishes using an immobilizing combination of synergistic venom peptides that target Kv and Nav channels. As part of this envenomation strategy, δ-conotoxins are potent ichtyotoxins that enhance Nav channel function. δ-Conotoxins belong to an ancient and widely distributed gene superfamily, but any evolutionary link from ancestral worm-eating cone snails to modern piscivorous species has not been elucidated. Here, we report the discovery of SuVIA, a potent vertebrate-active δ-conotoxin characterized from a vermivorous cone snail (Conus suturatus). SuVIA is equipotent at hNaV1.3, hNaV1.4 and hNaV1.6 with EC50s in the low nanomolar range. SuVIA also increased peak hNaV1.7 current by approximately 75% and shifted the voltage-dependence of activation to more hyperpolarized potentials from -15 mV to -25 mV, with little effect on the voltage-dependence of inactivation. Interestingly, the proximal venom gland expression and pain-inducing effect of SuVIA in mammals suggest that δ-conotoxins in vermivorous cone snails play a defensive role against higher order vertebrates. We propose that δ-conotoxins originally evolved in ancestral vermivorous cones to defend against larger predators including fishes have been repurposed to facilitate a shift to piscivorous behaviour, suggesting an unexpected underlying mechanism for this remarkable evolutionary transition. PMID:26156767

  13. The secreted proteins of Achlya hypogyna and Thraustotheca clavata identify the ancestral oomycete secretome and reveal gene acquisitions by horizontal gene transfer.

    Science.gov (United States)

    Misner, Ian; Blouin, Nic; Leonard, Guy; Richards, Thomas A; Lane, Christopher E

    2015-01-01

    Saprotrophic and parasitic microorganisms secrete proteins into the environment to breakdown macromolecules and obtain nutrients. The molecules secreted are collectively termed the "secretome" and the composition and function of this set of proteins varies depending on the ecology, life cycle, and environment of an organism. Beyond the function of nutrient acquisition, parasitic lineages must also secrete molecules to manipulate their host. Here, we use a combination of de novo genome and transcriptome sequencing and bioinformatic identification of signal peptides to identify the putative secreted proteome of two oomycetes, the facultative parasite Achlya hypogyna and free-living Thraustotheca clavata. By comparing the secretomes of these saprolegnialean oomycetes with that of eight other oomycetes, we were able to characterize the evolution of this protein set across the oomycete clade. These species span the last common ancestor of the two major oomycete families allowing us to identify the ancestral secretome. This putative ancestral secretome consists of at least 84 gene families. Only 11 of these gene families are conserved across all 10 secretomes analyzed and the two major branches in the oomycete radiation. Notably, we have identified expressed elicitin-like effector genes in the saprotrophic decomposer, T. clavata. Phylogenetic analyses show six novel horizontal gene transfers to the oomycete secretome from bacterial and fungal donor lineages, four of which are specific to the Saprolegnialeans. Comparisons between free-living and pathogenic taxa highlight the functional changes of oomycete secretomes associated with shifts in lifestyle. PMID:25527045

  14. Estimating ancestral distributions of lineages with uncertain sister groups: a statistical approach to Dispersal-Vicariance Analysis and a case using Aesculus L. (Sapindaceae) including fossils

    Institute of Scientific and Technical Information of China (English)

    A.J. HARRIS; Qiu-Yun (Jenny) XIANG

    2009-01-01

    We propose a simple statistical approach for using Dispersal-Vicariance Analysis (DIVA) software to infer biogeographic histories without fully bifurcating trees. In this approach, ancestral ranges are first optimized for a sample of Bayesian trees. The probability P of an ancestral range r at a node is then calculated as P(rY)= Σnt=1 F(rY)tPt where Y is a node, and F(rY) is the frequency of range r among all the optimal solutions resulting from DIVA optimization at node Y, t is one of n topologies optimized, and Pt is the probability of topology t. Node Y is a hypothesized ancestor shared by a specific crown lineage and the sister of that lineage "x", where x may vary due to phylogenetic uncertainty (polytomies and nodes with posterior probability <100%). Using this method, the ancestral distribution at Y can be estimated to provide inference of the geographic origins of the specific crown group of interest. This approach takes into account phylogenetic uncertainty as well as uncertainty from DIVA optimization. It is an extension of the previously described method called Bayes-DIVA, which pairs Bayesian phylogenetic analysis with biogeographic analysis using DIVA. Further, we show that the probability P of an ancestral range at Y calculated using this method does not equate to pp* F(rY) on the Bayesian consensus tree when both variables are < 100%, where pp is the posterior probability and F(rY) is the frequency of range r for the node containing the specific crown group. We tested our DIVA-Bayes approach using Aesculus L., which has major lineages unresolved as a polytomy. We inferred the most probable geographic origins of the five traditional sections of Aesculus and ofAesculus californica Nutt. and examined range subdivisions at parental nodes of these lineages.Additionally, we used the DIVA-Bayes data from Aesculus to quantify the effects on biogeographic inference of including two wildcard fossil taxa in phylogenetic analysis. Our analysis resolved the

  15. North Pacific sea ice cover, a predictor for the Western North Pacific typhoon frequency?

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The relationship between the sea ice cover in the North Pacific and the typhoon frequency has been studied in this paper. It follows that the index for the sea ice cover in the North Pacific (ISA) both in December-January-February (DJF) and in March-April-May (MAM) is negatively correlated with annual typhoon number over the western North Pacific (TNWNP) during 1965―2004, with correlation coeffi-cients of -0.42 and -0.49 respectively (above 99% significant level). Large sea ice cover in the North Pacific tends to decrease TNWNP. Positive ISA (MAM) is associated with the tropical circulation and SST anomalies in the North Pacific, which may lead to unfavorable dynamic and thermal conditions for typhoon genesis over WNP from June to October (JJASO). The variability of the atmospheric circula-tion over the North Pacific, associated with the ISA anomaly in MAM is connected to the tropical at-mospheric circulation variability in MAM via the teleconnection wave train. Besides, as the tropical circulation has strong seasonal persistency from the MAM to JJASO, thus, the ISA in MAM-related variability of the tropical atmospheric circulation as well as the SST can affect the typhoon activity over the western North Pacific.

  16. Establishing bioinformatics research in the Asia Pacific

    OpenAIRE

    Tammi Martti; Ranganathan Shoba; Gribskov Michael; Tan Tin Wee

    2006-01-01

    Abstract In 1998, the Asia Pacific Bioinformatics Network (APBioNet), Asia's oldest bioinformatics organisation was set up to champion the advancement of bioinformatics in the Asia Pacific. By 2002, APBioNet was able to gain sufficient critical mass to initiate the first International Conference on Bioinformatics (InCoB) bringing together scientists working in the field of bioinformatics in the region. This year, the InCoB2006 Conference was organized as the 5th annual conference of the Asia-...

  17. Zooplanktonic diversity in the western Pacific

    OpenAIRE

    Mao Lin; Chunguang Wang; Yanguo Wang; Peng Xiang; Yu Wang; Guangshan Lian; Ruixiang Chen; Xiaoyin Chen; Youyin Ye; Yanyu Dai; Jinghong Lin; Zhenzu Xu; Jiaqi Huang; Donghui Guo

    2011-01-01

    The western Pacific region has been operating as a centre for the origin of marine biodiversity: the richest diversity of many marine taxa was found in these waters. Therefore, biodiversity research and con-servation efforts in this area are necessary in order to promote the integrative and international management of this resource. The present work is a compilation of numbers of all the families, genera and species of ma-jor taxa of zooplankton known in the western Pacific Ocean(106°–150°E, ...

  18. Information for Authors Asian Pacific Journal of Tropical Biomedcine GENERAL

    Institute of Scientific and Technical Information of China (English)

    2013-01-01

    <正>Asian Pacific Journal of Tropica)Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and aims to set up an academic communicating plaflorm for Chinese and scientists all over the world on tropical biomedicine

  19. Asia Pacific Mangrove Information Network (APMIN): A conceptual model

    Digital Repository Service at National Institute of Oceanography (India)

    Chavan, V.S.; Jagtap, T.G.; Untawale, A.G.

    Asia Pacific Mangrove Information Network (APMIN), its structure and scope, is discussed in this paper. Establishment of National Mangrove Information Centers (NMIC) in 20 Asia-Pacific countries, would contribute towards development of databases...

  20. Pacific Albacore Troll and Pole-and-line Fisheries

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The North Pacific and South Pacific Albacore Troll and Pole-and-line Fisheries project contains landings, logbooks, and size composition data from U.S.A. troll and...

  1. AFSC/REFM: Pacific cod Localized Depletion Study

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Data from Localized Depletion study for Pacific cod 2001-2005. Study was conducted using cod pot gear to measure localized abundance of Pacific cod inside and...

  2. FastStats: Health of Asian or Pacific Islander Population

    Science.gov (United States)

    ... NCHS Home Health of Asian or Pacific Islander Population Recommend on Facebook Tweet Share Compartir Data are ... U.S. Live births for Asian or Pacific Islander population Number of births: 282,723 Births per 1, ...

  3. The Southwest Pacific Ocean circulation and climate experiment (SPICE)

    OpenAIRE

    Ganachaud, Alexandre; Cravatte, Sophie; A. Melet; Schiller, A.; Holbrook, N J; Sloyan, B.M.; Widlansky, M.J.; Bowen, M; Verron, J.; Wiles, P; K. Ridgway; Sutton, P.; Sprintall, J.; Steinberg, C.; Brassington, G.

    2014-01-01

    The Southwest Pacific Ocean Circulation and Climate Experiment (SPICE) is an international research program under the auspices of CLIVAR. The key objectives are to understand the Southwest Pacific Ocean circulation and the South Pacific Convergence Zone (SPCZ) dynamics, as well as their influence on regional and basin-scale climate patterns. South Pacific thermocline waters are transported in the westward flowing South Equatorial Current (SEC) toward Australia and Papua-New Guinea. On its way...

  4. The UCLA Asian Pacific American Voter Registration Study

    OpenAIRE

    Nakanishi, Don T.

    1986-01-01

    Asian Pacific American political involvement is not a new phenomenon, but it has clearly become a significant focus of attention for the Asian Pacific American population. Perhaps at no other period in Asian Pacific American history have so many individuals and organizations of different issue orientations participated in a wide array of political activities, especially in relation to American electoral politics, but also in the affairs of the Pacific Rim. At the same time, what has come to b...

  5. 76 FR 24465 - Pacific Gas and Electric Company

    Science.gov (United States)

    2011-05-02

    ... Energy Regulatory Commission Pacific Gas and Electric Company Notice of Application Tendered for Filing....: 2310-193. c. Date Filed: April 12, 2011. d. Applicant: Pacific Gas and Electric Company. e. Name of... Contact: Steve Peirano, Relicensing Project Manager, Pacific Gas and Electric Company, P.O. Box...

  6. 77 FR 43810 - Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2012-07-26

    ... National Oceanic and Atmospheric Administration RIN 0648-XC126 Pacific Fishery Management Council; Public... (NOAA), Commerce. ACTION: Notice of public meeting. SUMMARY: The Pacific Fishery Management Council (Pacific Council) will hold a trawl catch share program gear workshop (workshop), which is open to...

  7. CRED 20 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (20 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  8. CRED 5 m Gridded bathymetry of Kingman Reef, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the lagoon, shelf and slope environments of Kingman Reef, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  9. CRED 5 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (5 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  10. CRED 20 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (20 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  11. CRED 5 m Gridded bathymetry of Baker Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Baker Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  12. CRED 5 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  13. CRED 40 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  14. CRED 5 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  15. CRED 5 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  16. CRED 40 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  17. CRED 5 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  18. CRED 5 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (5 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  19. CRED 20 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (20 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  20. CRED 40 m Gridded bathymetry of Howland Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the shelf and slope environments of Howland Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  1. CRED 40 m Gridded bathymetry of Baker Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the shelf and slope environments of Baker Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  2. CRED 40 m Gridded bathymetry of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (40 m cell size) bathymetry of the lagoon, shelf and slope environments of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete...

  3. CRED 20 m Gridded bathymetry of Kingman Reef, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (20 m cell size) bathymetry of the lagoon, shelf and slope environments of Kingman Reef, Pacific Remote Island Areas, Central Pacific. Almost complete...

  4. CRED 20 m Gridded bathymetry of Johnston Atoll, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry (20 m cell size) of the shelf and slope environments of Johnston Atoll, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  5. CRED 5 m Gridded bathymetry of Baker Island, Pacific Remote Island Areas, Central Pacific (Arc ASCII Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Baker Island, Pacific Remote Isand Areas, Central Pacific. Almost complete bottom coverage...

  6. CRED 5 m Gridded bathymetry of Jarvis Island, Pacific Remote Island Areas, Central Pacific (NetCDF Format)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Gridded (5 m cell size) bathymetry of the shelf and slope environments of Jarvis Island, Pacific Remote Island Areas, Central Pacific. Almost complete bottom...

  7. CRED Reson 8101 multibeam backscatter data of Jarvis Island, Pacific Remote Island Areas, Central Pacific in netCDF format

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the shelf and slope environments of Jarvis Atoll, Pacific Island Areas, Central Pacific. These...

  8. CRED Reson 8101 multibeam backscatter data of Jarvis Island, Pacific Remote Island Areas, Central Pacific in GeoTIFF format

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the shelf and slope environments of Jarvis Atoll, Pacific Island Areas, Central Pacific. These...

  9. CRED Reson 8101 multibeam backscatter data of Howland Island, Pacific Remote Island Areas, Central Pacific in GeoTIFF format

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the shelf and slope environments of Howland Atoll, Pacific Island Areas, Central Pacific. These...

  10. Pacific Flyway management plan for the Pacific Flyway Population of greater white-fronted geese

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — For the purposes of this management plan, the greater white-fronted goose subspecies (Anseralbifrons frontalis) occurring in the Pacific Flyway is termed the...

  11. 76 FR 28422 - Fisheries of the Pacific Region; Western Pacific Region

    Science.gov (United States)

    2011-05-17

    ... Administration (NOAA), Commerce. ACTION: Notification of determination of overfishing or an overfished condition... Fishery Management Council (Western Pacific Council), is subject to overfishing. NMFS notifies the appropriate fishery management council (Council) whenever it determines that; overfishing is occurring,...

  12. Extreme winds in the Western North Pacific

    DEFF Research Database (Denmark)

    Ott, Søren

    2006-01-01

    A statistical model for extreme winds in the western North Pacific is developed, the region on the Planet where tropical cyclones are most common. The model is based on best track data derived mostly from satellite images of tropical cyclones. The methodsused to estimate surface wind speeds from...

  13. African and Pacific Literature: A Comparative Study.

    Science.gov (United States)

    Martin, Kristine L.

    Literary writing in Africa and the Pacific addresses themes that reflect colonial experience and the struggles of newly independent nations to cope with change and conflicts between traditional and modern existence. The novels of Chinua Achebe of Nigeria and Ngugi Wa Thiong'o of Kenya illustrate many dominant themes of African literature. Achebe…

  14. Biogeographic congruence in the south Pacific

    DEFF Research Database (Denmark)

    Seberg, Ole

    1991-01-01

    Ever since J. D. Hooker's famous 'Introductory Essay' to Flora NOVE-Zelandise, a classical problem in biogeography has been to give a casual explanation of southern hemisphere distribution patterns. An attempt is made to see whether the cladograms for the circum-Pacific areas (South America, New...

  15. Asian Pacific American Women's Health Concerns.

    Science.gov (United States)

    Pian, Canta

    This paper discusses the adjustment and acculturation problems of Asian Pacific American women and how these problems relate to their health concerns. Information presented in the article is based on the observations of health service providers to the Asian community. The paper suggests that the diversity of Asian Americans (age, ethnic group, and…

  16. Establishing bioinformatics research in the Asia Pacific

    Directory of Open Access Journals (Sweden)

    Tammi Martti

    2006-12-01

    Full Text Available Abstract In 1998, the Asia Pacific Bioinformatics Network (APBioNet, Asia's oldest bioinformatics organisation was set up to champion the advancement of bioinformatics in the Asia Pacific. By 2002, APBioNet was able to gain sufficient critical mass to initiate the first International Conference on Bioinformatics (InCoB bringing together scientists working in the field of bioinformatics in the region. This year, the InCoB2006 Conference was organized as the 5th annual conference of the Asia-Pacific Bioinformatics Network, on Dec. 18–20, 2006 in New Delhi, India, following a series of successful events in Bangkok (Thailand, Penang (Malaysia, Auckland (New Zealand and Busan (South Korea. This Introduction provides a brief overview of the peer-reviewed manuscripts accepted for publication in this Supplement. It exemplifies a typical snapshot of the growing research excellence in bioinformatics of the region as we embark on a trajectory of establishing a solid bioinformatics research culture in the Asia Pacific that is able to contribute fully to the global bioinformatics community.

  17. Asian and Pacific Islander Special Populations Network

    OpenAIRE

    Chu, Kenneth C.

    2003-01-01

    This paper briefly describes four programs within the National Cancer Institute’s Special Populations Network, programs designed to promote cancer awareness in minority and underserved populations. These four programs are dedicated to issues involving Asian Americans and Pacific Islanders. Of particular interest is the fact that they each have a strong community focus and are targeted to specific populations.

  18. Asian Pacific Journal of Tropical Biomedicine

    Institute of Scientific and Technical Information of China (English)

    Alexandra Bagley; Usman H Malabu

    2014-01-01

    Two-third of the world’s population lives in the Asia Pacific region where prevalence of diabetes has reached epidemic proportion. With China and India being the most populous nations on the globe, it is believed that over 150 million diabetes reside in the region with more than 95% being of type 2 diabetes mellitus (T2DM). Furthermore, other Pacific islands in the region have high rates of T2DM including Tonga, Fiji, French Polynesia, and Nauru. The latter has the highest prevalence of T2DM per population in the world. Over the past two decades, in Australia and New Zealand, the prevalence of T2DM has more than doubled, mainly amongst the Aboriginal and Torres Strait Islander and Maori peoples respectively. With the increasing prevalence of diabetes in the Asia Pacific region coupled with the limited number of resources, use of a reliable and effective mode of diagnosis for T2DM is warranted. Yet to date, only New Zealand has adopted the American Diabetes Association recommendation of using hemoglobin A1C in the diagnosis of the disease. The aim of this review is to discuss the clinical usefulness of hemoglobin A1C and highlight its diagnostic role in the Asia Pacific region where T2DM is increasingly encountered.

  19. SCIENCE, POLITICS, AND PACIFIC NORTHWEST SALMON RECOVERY

    Science.gov (United States)

    Throughout the Pacific Northwest, since 1850, all wild salmon runs have declined and some have disappeared. Billions of dollars have been spent in a so-far failed attempt to reverse the long-term decline. Each year, hundreds of millions of dollars continue to be spent in variou...

  20. Pacific Basin climate variability and patterns of Northeast Pacific marine fish production

    Science.gov (United States)

    Hollowed, Anne Babcock; Hare, Steven R.; Wooster, Warren S.

    A review of oceanographic and climate data from the North Pacific and Bering Sea has revealed climate events that occur on two principal time scales: a) 2-7 years (i.e. El Niño Southern Oscillation, ENSO), and b) inter-decadal (i.e. Pacific Decadal Oscillation, PDO). The timing of ENSO events and of related oceanic changes at higher latitudes were examined. The frequency of ENSO was high in the 1980s. Evidence of ENSO forcing on ocean conditions in the North Pacific (Niño North conditions) showed ENSO events were more frequently observed along the West Coast than in the western Gulf of Alaska (GOA) and Eastern Bering Sea (EBS). Time series of catches for 30 region/species groups of salmon, and recruitment data for 29 groundfish and 5 non-salmonid pelagic species, were examined for evidence of a statistical relationship with any of the time scales associated with Niño North conditions or the PDO. Some flatfish stocks exhibited high autocorrelation in recruitment coupled with a significant step in recruitment in 1977 suggesting a relationship between PDO forcing and recruitment success. Five of the dominant gadid stocks (EBS and GOA Pacific cod, Pacific hake and EBS and GOA walleye pollock) exhibited low autocorrelation in recruitment. Of these, Pacific hake, GOA walleye pollock and GOA Pacific cod exhibited significantly higher incidence of strong year classes in years associated with Niño North conditions. These findings suggest that the PDO and ENSO may play an important role in governing year-class strength of several Northeast Pacific marine fish stocks.

  1. Use of ICT in Education in the South Pacific: Findings of the Pacific eLearning Observatory

    Science.gov (United States)

    Whelan, Robert

    2008-01-01

    The Pacific eLearning Observatory at the University of the South Pacific (USP) conducted an online survey of educational technologists (n = 60) to assess levels of access to information and communication technologies (ICT) in education and identify ways of lowering the barriers to ICT in the Pacific region. Almost half of USP's 22,000 students are…

  2. Detection of "punctuated equilibrium" by bayesian estimation of speciation and extinction rates, ancestral character states, and rates of anagenetic and cladogenetic evolution on a molecular phylogeny.

    Science.gov (United States)

    Bokma, Folmer

    2008-11-01

    Algorithms are presented to simultaneously estimate probabilities of speciation and extinction, rates of anagenetic and cladogenetic phenotypic evolution, as well as ancestral character states, from a complete ultrametric species-level phylogeny with dates assigned to all bifurcations and one or more phenotypes in three or more extant species, using Metropolis-Hastings Markov Chain Monte Carlo sampling. The algorithms also estimate missing phenotypes of extant species and numbers of speciation events that occurred on all branches of the phylogeny. The algorithms are discussed and their performance is evaluated using simulated data. That evaluation shows that precise estimation of rates of evolution of one or a few phenotypes requires large phylogenies. Estimation accuracy improves with the number of species on the phylogeny. PMID:18752617

  3. Mating animals by minimising the covariance between ancestral contributions generates less inbreeding without compromising genetic gain in breeding schemes with truncation selection

    DEFF Research Database (Denmark)

    Henryon, M; Berg, P; Sørensen, A C

    2009-01-01

    they can be achieved without extra costs or practical constraints. MCAC mating merely uses pedigree information to pair the animals more appropriately and is clearly a worthy alternative to minimum-coancestry mating and probably any other mating criterion. We believe, therefore, that MCAC mating should......We reasoned that mating animals by minimising the covariance between ancestral contributions (MCAC mating) will generate less inbreeding and at least as much genetic gain as minimum-coancestry mating in breeding schemes where the animals are truncation-selected. We tested this hypothesis...... by stochastic simulation and compared the mating criteria in hierarchical and factorial breeding schemes, where the animals were selected based on breeding values predicted by animal-model BLUP. Random mating was included as a reference-mating criterion. We found that MCAC mating generated 4% to 8% less...

  4. 济南市闵子骞祠堂东汉墓%Eastern Han Tomb in the Min Ziqian Ancestral Temple in Jinan City

    Institute of Scientific and Technical Information of China (English)

    济南市考古研究所

    2004-01-01

    In 2000, the Jinan Municipal Institute of Archaeology carried out a rescuing excavation to explore a tomb in the Min Ziqian ancestral temple, Jinan City. The grave is built of brick and stone, consists of an anterior, a middle, a back and two side rooms, and has a "凸"-shaped plan. It has been seriously robbed, but still above 60 pottery objects and copper coins are left over from the grave goods. Among them pottery domestic fowls and animals come first in number, and four pictorial stones remain in the tomb. The tomb shape, the features of the objects and those of the pictorial stones suggest that the burial belongs to the late Eastern Han period.

  5. X-Ray Crystal Structure of the Ancestral 3-Ketosteroid Receptor-Progesterone-Mifepristone Complex Shows Mifepristone Bound at the Coactivator Binding Interface

    Energy Technology Data Exchange (ETDEWEB)

    Colucci, Jennifer K.; Ortlund, Eric A. [Emory-MED

    2013-12-12

    Steroid receptors are a subfamily of nuclear receptors found throughout all metazoans. They are highly important in the regulation of development, inflammation, and reproduction and their misregulation has been implicated in hormone insensitivity syndromes and cancer. Steroid binding to SRs drives a conformational change in the ligand binding domain that promotes nuclear localization and subsequent interaction with coregulator proteins to affect gene regulation. SRs are important pharmaceutical targets, yet most SR-targeting drugs have off-target pharmacology leading to unwanted side effects. A better understanding of the structural mechanisms dictating ligand specificity and the evolution of the forces that created the SR-hormone pairs will enable the design of better pharmaceutical ligands. In order to investigate this relationship, we attempted to crystallize the ancestral 3-ketosteroid receptor (ancSR2) with mifepristone, a SR antagonist. Here, we present the x-ray crystal structure of the ancestral 3-keto steroid receptor (ancSR2)-progesterone complex at a resolution of 2.05 Å. This improves upon our previously reported structure of the ancSR2-progesterone complex, permitting unambiguous assignment of the ligand conformation within the binding pocket. Surprisingly, we find mifepristone, fortuitously docked at the protein surface, poised to interfere with coregulator binding. Recent attention has been given to generating pharmaceuticals that block the coregulator binding site in order to obstruct coregulator binding and achieve tissue-specific SR regulation independent of hormone binding. Mifepristone’s interaction with the coactivator cleft of this SR suggests that it may be a useful molecular scaffold for further coactivator binding inhibitor development.

  6. Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity.

    Science.gov (United States)

    Spreadbury, Ian

    2012-01-01

    A novel hypothesis of obesity is suggested by consideration of diet-related inflammation and evolutionary medicine. The obese homeostatically guard their elevated weight. In rodent models of high-fat diet-induced obesity, leptin resistance is seen initially at vagal afferents, blunting the actions of satiety mediators, then centrally, with gastrointestinal bacterial-triggered SOCS3 signaling implicated. In humans, dietary fat and fructose elevate systemic lipopolysaccharide, while dietary glucose also strongly activates SOCS3 signaling. Crucially however, in humans, low-carbohydrate diets spontaneously decrease weight in a way that low-fat diets do not. Furthermore, nutrition transition patterns and the health of those still eating diverse ancestral diets with abundant food suggest that neither glycemic index, altered fat, nor carbohydrate intake can be intrinsic causes of obesity, and that human energy homeostasis functions well without Westernized foods containing flours, sugar, and refined fats. Due to being made up of cells, virtually all "ancestral foods" have markedly lower carbohydrate densities than flour- and sugar-containing foods, a property quite independent of glycemic index. Thus the "forgotten organ" of the gastrointestinal microbiota is a prime candidate to be influenced by evolutionarily unprecedented postprandial luminal carbohydrate concentrations. The present hypothesis suggests that in parallel with the bacterial effects of sugars on dental and periodontal health, acellular flours, sugars, and processed foods produce an inflammatory microbiota via the upper gastrointestinal tract, with fat able to effect a "double hit" by increasing systemic absorption of lipopolysaccharide. This model is consistent with a broad spectrum of reported dietary phenomena. A diet of grain-free whole foods with carbohydrate from cellular tubers, leaves, and fruits may produce a gastrointestinal microbiota consistent with our evolutionary condition, potentially

  7. The impact of ancestral heath management on soils and landscapes. A reconstruction based on paleoecological analyses of soil records in the middle and southeast Netherlands.

    Science.gov (United States)

    van Mourik, Jan; Doorenbosch, Marieke

    2016-04-01

    The evolution of heath lands during the Holocene has been registered in various soil records . Paleoecological analyses of these records enable to reconstruct the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation, in addition on the forest degradation accelerated due to cultural activities like forest grazing, wood cutting and shifting cultivation. Heather plants invaded on degraded forest soils and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the Late Neolithic, the Bronze Age and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age people probably continued with cattle grazing on the heaths and plaggic agriculture until the Early Middle Ages. After 1000 AD two events affected the heaths. At first deforestation for the sale of wood resulted in the first regional extension of sand drifting and heath degradation. After that the introduction of the deep stable economy and heath sods digging resulted in acceleration of the rise of plaggic horizons, severe heath degradation and the second extension of sand drifting. At the end of the 19th century the heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into 'new' arable fields and forests and due to deep ploughing most soil archives were destroyed. Since 1980 AD, the remaining relicts of the ancestral heaths are

  8. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species.

    Directory of Open Access Journals (Sweden)

    Michael B Walker

    Full Text Available Arrangements of genes along chromosomes are a product of evolutionary processes, and we can expect that preferable arrangements will prevail over the span of evolutionary time, often being reflected in the non-random clustering of structurally and/or functionally related genes. Such non-random arrangements can arise by two distinct evolutionary processes: duplications of DNA sequences that give rise to clusters of genes sharing both sequence similarity and common sequence features and the migration together of genes related by function, but not by common descent. To provide a background for distinguishing between the two, which is important for future efforts to unravel the evolutionary processes involved, we here provide a description of the extent to which ancestrally related genes are found in proximity.Towards this purpose, we combined information from five genomic datasets, InterPro, SCOP, PANTHER, Ensembl protein families, and Ensembl gene paralogs. The results are provided in publicly available datasets (http://cgd.jax.org/datasets/clustering/paraclustering.shtml describing the extent to which ancestrally related genes are in proximity beyond what is expected by chance (i.e. form paraclusters in the human and nine other vertebrate genomes, as well as the D. melanogaster, C. elegans, A. thaliana, and S. cerevisiae genomes. With the exception of Saccharomyces, paraclusters are a common feature of the genomes we examined. In the human genome they are estimated to include at least 22% of all protein coding genes. Paraclusters are far more prevalent among some gene families than others, are highly species or clade specific and can evolve rapidly, sometimes in response to environmental cues. Altogether, they account for a large portion of the functional clustering previously reported in several genomes.

  9. Conserved intron positions in FGFR genes reflect the modular structure of FGFR and reveal stepwise addition of domains to an already complex ancestral FGFR.

    Science.gov (United States)

    Rebscher, Nicole; Deichmann, Christina; Sudhop, Stefanie; Fritzenwanker, Jens Holger; Green, Stephen; Hassel, Monika

    2009-10-01

    We have analyzed the evolution of fibroblast growth factor receptor (FGFR) tyrosine kinase genes throughout a wide range of animal phyla. No evidence for an FGFR gene was found in Porifera, but we tentatively identified an FGFR gene in the placozoan Trichoplax adhaerens. The gene encodes a protein with three immunoglobulin-like domains, a single-pass transmembrane, and a split tyrosine kinase domain. By superimposing intron positions of 20 FGFR genes from Placozoa, Cnidaria, Protostomia, and Deuterostomia over the respective protein domain structure, we identified ten ancestral introns and three conserved intron groups. Our analysis shows (1) that the position of ancestral introns correlates to the modular structure of FGFRs, (2) that the acidic domain very likely evolved in the last common ancestor of triploblasts, (3) that splicing of IgIII was enabled by a triploblast-specific insertion, and (4) that IgI is subject to substantial loss or duplication particularly in quickly evolving genomes. Moreover, intron positions in the catalytic domain of FGFRs map to the borders of protein subdomains highly conserved in other serine/threonine kinases. Nevertheless, these introns were introduced in metazoan receptor tyrosine kinases exclusively. Our data support the view that protein evolution dating back to the Cambrian explosion took place in such a short time window that only subtle changes in the domain structure are detectable in extant representatives of animal phyla. We propose that the first multidomain FGFR originated in the last common ancestor of Placozoa, Cnidaria, and Bilateria. Additional domains were introduced mainly in the ancestor of triploblasts and in the Ecdysozoa. PMID:20016912

  10. Pacific Lamprey Research and Restoration : Annual Report 1997.

    Energy Technology Data Exchange (ETDEWEB)

    Jackson, Aaron D.; Hatch, Douglas R.; Close, David A.

    1998-08-05

    The once abundant stocks of Pacific lamprey (Lampetra tridentata) above Bonneville Dam are currently depressed (Close et al. 1995). It is likely that many of the same factors that led to the decline of wild stocks of Columbia River Pacific salmon and steelhead have impacted Pacific lamprey populations as well. The Pacific Lamprey Research and Restoration Project, funded by Bonneville Power Administration, is a cooperative effort between the Confederated Tribes of the Umatilla Indian Reservation, the Columbia River Inter-Tribal Fish Commission, and Oregon State University with the goal to increase Pacific lamprey stocks above Bonneville Dam.

  11. Indo-Pacific: Origin and Multinational Strategic Game-play

    Institute of Scientific and Technical Information of China (English)

    WU; Zhaoli

    2014-01-01

    In recent years, the United States, Australia and India have initiated the Indo-Pacific concept,which is not a simple result of the Indian Ocean plus the Pacific Ocean, but a geo-economic and geo-political development of the two regions.Indo-Pacific reflects the shift of the global economic gravity and strategic center,and the China factor is obvious in this process.The extending Chinese strategic interests are beyond the traditional Asia-Pacific region, but China as a typical Indo-Pacific country should be cautious about the "selective exclusion"and "targeted promotion"

  12. Climate Variability and Phytoplankton in the Pacific Ocean

    Science.gov (United States)

    Rousseaux, Cecile

    2012-01-01

    The effect of climate variability on phytoplankton communities was assessed for the tropical and sub-tropical Pacific Ocean between 1998 and 2005 using an established biogeochemical assimilation model. The phytoplankton communities exhibited wide range of responses to climate variability, from radical shifts in the Equatorial Pacific, to changes of only a couple of phytoplankton groups in the North Central Pacific, to no significant changes in the South Pacific. In the Equatorial Pacific, climate variability dominated the variability of phytoplankton. Here, nitrate, chlorophyll and all but one of the 4 phytoplankton types (diatoms, cyanobacteria and coccolithophores) were strongly correlated (pclimate variability can play in ocean biology.

  13. Population genetics of the invasive cryptogenic anemone, Anemonia alicemartinae, along the southeastern Pacific coast

    Science.gov (United States)

    Canales-Aguirre, C. B.; Quiñones, A.; Hernández, C. E.; Neill, P. E.; Brante, A.

    2015-08-01

    One of the most important issues in biological invasions is understanding the factors and mechanisms determining the invasion success of non-native species. Theoretical and empirical works have shown that genetic diversity is a determinant of invasion success; thus, studying spatial patterns of genetic diversity, and exploring how biological and physical factors shape this population trait, are fundamental for understanding this phenomenon. Coastal marine ecosystems are one of the most susceptible habitats to invasion given the complex network of maritime transport. In this work we study the cryptogenic anemone, Anemonia alicemartinae, which has rapidly increased its geographical range southward during the last 50 years (approx. 2000 km) along the southeastern Pacific coast. Based on COI mtDNA sequences we evaluated three main hypotheses: a) the genetic diversity of A. alicemartinae decreases according to the direction of invasion (from north to south); b) there is biogeographic-phylogeographic concordance at the 30°S biogeographic break; and c) the demographic history is coherent with a recent geographic expansion. A total of 161 individual samples of A. alicemartinae were collected along the southeastern Pacific coast range of distribution, covering more than 2000 km, including samples along the 30°S biogeographical break. Results showed low genetic diversity (Hd = 0.253; π = 0.08) and a lack of geographic population genetic structure (FST = - 0.009, p-value = 0.656). The highest genetic diversity was observed in Peru (Chero and Mesas) and at localities close to the main Chilean seaports. We did not observe concordance between biogeographic and phylogeographic patterns or isolation by distance. Demographic indices (D = - 2.604, p < 0.001; Fu's = - 26.619, p < 0.001), as well as a star-like configuration of the haplotype network support recent population expansion of this species. Our results, together with historical field observations, support the idea that

  14. 1996 Pacific Northwest Loads and Resources Study.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1996-12-01

    The Pacific Northwest Loads and Resources Study (White Book) is published annually by BPA and establishes the planning basis for supplying electricity to customers. It serves a dual purpose. First, the White Book presents projections of regional and Federal system load and resource capabilities, along with relevant definitions and explanations. Second, the White Book serves as a benchmark for annual BPA determinations made pursuant to the 1981 regional power sales contracts. Specifically, BPA uses the information in the White Book for determining the notice required when customers request to increase or decrease the amount of power purchased from BPA. Aside from these purposes, the White Book is used for input to BPA`s resource planning process. The White Book compiles information obtained from several formalized resource planning reports and data submittals, including those from the Northwest Power Planning Council (Council) and the Pacific Northwest Utilities Conference Committee (PNUCC). 11 figs., 12 tabs.

  15. Nuclear activities and the Pacific islanders

    International Nuclear Information System (INIS)

    Although to outsiders the Pacific islands may seem far removed from the center of activities and controversies related to nuclear energy, this area has had more direct and negative experiences with nuclear issues than any other area in the world. These experiences have led to a deep-rooted skepticism of all nuclear activities in which distinctions between civilian and military activities, weapons and power, and low-and high-level waste bear little relation to the important Pacific concerns. Antinuclear sentiments are intimately linked to anticolonialism, growing regionalism and emerging cultural pride. Opposition and concern have been expressed in a number of international, regional, national and nongovernmental forums. In this climate, arguments about the relative safety of various waste disposal operations and other nuclear activities are not likely to be meaningful. (author)

  16. The Pacific Obesity Prevention in Communities project

    DEFF Research Database (Denmark)

    Swinburn, B A; Millar, L; Utter, J;

    2011-01-01

    Obesity is increasing worldwide with the Pacific region having the highest prevalence among adults. The most common precursor of adult obesity is adolescent obesity making this a critical period for prevention. The Pacific Obesity Prevention in Communities project was a four-country project (Fiji......, Tonga, New Zealand and Australia) designed to prevent adolescent obesity. This paper overviews the project and the methods common to the four countries. Each country implemented a community-based intervention programme promoting healthy eating, physical activity and healthy weight in adolescents. A....... The evaluation tools common to each are described. Additional analytical studies included economic, socio-cultural and policy studies. The project pioneered many areas of obesity prevention research: using multi-country collaboration to build research capacity; testing a capacity-building approach in...

  17. PACIFIC NORTHWEST GRAIN GROWNERS' INCOME RISK MANAGEMENT

    OpenAIRE

    Ke, Bingfan; Wang, H. Holly

    2001-01-01

    In this paper, we identified the most desirable farm income risk management strategies for two rotation systems in the Pacific Nowthwest(PNW)area under a framework of expected utility maximization. Insurance programs available to PNW farmers and wheat futures market instruments are included in this study. The risk management effectiveness of each instrument and the substitute effect of revenue insurance programs on the combination of yield insurance and futures market are also evaluated.

  18. Assistance Focus: Asia/Pacific Region (Brochure)

    Energy Technology Data Exchange (ETDEWEB)

    2015-01-01

    The Clean Energy Solutions Center Ask an Expert service connects governments seeking policy information and advice with one of more than 30 global policy experts who can provide reliable and unbiased quick-response advice and information. The service is available at no cost to government agency representatives from any country and the technical institutes assisting them. This publication presents summaries of assistance provided to governments in the Asia/Pacific region, including the benefits of that assistance.

  19. The seven "oddities" of Pacific Odonata biogeography

    OpenAIRE

    Marinov, Milen

    2015-01-01

    The existing literature on the Odonata inhabiting the three large divisions of the Pacific Ocean (Micronesia, Melanesia, Polynesia) is revised taking into consideration earlier discussions on the species origin, historical faunistic records, various palaeogeographical models proposed for the area, general data on the biology and ecology of this insect order. Special emphasis is paid on the incomplete data set for the region and inconsistency of the exploration of this vast area. The taxonomy ...

  20. Market Quality of Pacific Northwest Pears

    OpenAIRE

    Gallardo, Rosa Karina; Kupferman, Eugene M.; Beaudry, Randolph M.; Blankenship, Sylvia M.; Mitcham, Elizabeth J; Watkins, Christopher B

    2011-01-01

    This study uses data collected from retail grocery chains during marketing season 2003-2004 to examine the external quality and price variations of Pacific Northwest pears. Quality refers to overall fruit appearance and presence of external disorders. Results from a bivariate probit model show that fruit weight and firmness had a positive effect on overall appearance. Results from a hedonic price model show that the recurrence of external disorders is not necessarily negatively correlated wit...

  1. Pacific Alliance as Counterpart to MERCOSUR

    OpenAIRE

    Skřička, Vojtěch

    2015-01-01

    This thesis focuses on two integration blocks in Latin America -- the Pacific Alliance and MERCOSUR. The analysis should confirm the hypothesis that the integrated countries converge faster than non-integrated. With use of beta-convergence and sigma-convergence approaches, this hypothesis was rejected for the two Latin American integration groups. It is also supposed that market-led policies should diverge from the protectionist countries in terms of per capita income. However, this hypothesi...

  2. Pacific Northern Gas Ltd. annual report 2002

    International Nuclear Information System (INIS)

    Pacific Northern Gas Ltd. operates in west-central and northeast British Columbia. The company delivers natural gas to customers through a transmission pipeline connected to Duke Energy system near Summit Lake, British Columbia. This report states that in 2002 financial results were disappointing. The company's net income in 2002 was lower than it was in 2001 ($4.6 million versus $5.7 million). In December 2002, Pacific Northern Gas Ltd. completed $15 million in financing. Additions to property, plant and equipment reached a total of $6 million in 2002. A new, seven-year contract with Methanex Corporation was successfully negotiated. Pacific Northern Gas Ltd. filed revenue requirements applications with the British Columbia Utilities Commission, seeking the Commission's approval of rates for 2003 and requesting approval of a new deferral account in all divisions. A settlement of the western system 2003 revenue requirements application was negotiated with its customers. The annual report presented a highlight of all activities, including corporate governance and management discussions and analysis. Consolidated financial statements were also provided. tabs

  3. Blind to morphology: Genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia)

    KAUST Repository

    Pinzón, Jorge H C

    2013-04-05

    Aim: Using high-resolution genetic markers on samples gathered from across their wide distributional range, we endeavoured to delimit species diversity in reef-building Pocillopora corals. They are common, ecologically important, and widespread throughout the Indo-Pacific, but their phenotypic plasticity in response to environmental conditions and their nearly featureless microskeletal structures confound taxonomic assignments and limit an understanding of their ecology and evolution. Location: Indo-Pacific, Red Sea, Arabian/Persian Gulf. Methods: Sequence analysis of nuclear ribosomal (internal transcribed spacer 2, ITS2) and mitochondrial (open reading frame) loci were combined with population genetic data (seven microsatellite loci) for Pocillopora samples collected throughout the Indo-Pacific, Red Sea and Arabian Gulf, in order to assess the evolutionary divergence, reproductive isolation, frequency of hybridization and geographical distributions of the genus. Results: Between five and eight genetically distinct lineages comparable to species were identified with minimal or no hybridization between them. Colony morphology was generally incongruent with genetics across the full range of sampling, and the total number of species is apparently consistent with lower estimates from competing morphologically based hypotheses (about seven or eight taxa). The most commonly occurring genetic lineages were widely distributed and exhibited high dispersal and gene flow, factors that have probably minimized allopatric speciation. Uniquely among scleractinian genera, this genus contains a monophyletic group of broadcast spawners that evolved recently from an ancestral brooder. Main conclusions: The delineation of species diversity guided by genetics fundamentally advances our understanding of Pocillopora geographical distributions, ecology and evolution. Because traditional diagnostic features of colony and branch morphology are proving to be of limited utility, the

  4. Heat flow in northwest Pacific marginal seas

    Institute of Scientific and Technical Information of China (English)

    JIANG Lili; LI Guanbao; LI Naisheng

    2004-01-01

    Heat flow studies in Northwest Pacific marginal seas has a more than 40 years history with more than 4000 heat flow values obtained. The regional average value is 80.4 mW/m2, which is lower than the world's 87 mW/m2, but higher than those of the Eurasia continent and the Pacific Ocean. This reflects the regional crust property in the area. The studies on distribution of the heat flow and contour pattern of heat flow in 1°×1°and 2°×2°scales in Northwest Pacific marginal seas revealed that the most high heat flow anomalies in the area were found along back-arc basins and island arc in an obviously northeasterly track. Exceptions are the Komandoskaya Basin (KMB), the Izu-Bonin Trough (IBT) and the Mariana Trough (MT), which extend in northwest. The contours of low heat flow marked the boundaries of the continent and the ocean. The present heat flow values reflect the imprint of the last thermal event and relate closely to tectonic activity. The high heat flow gradient areas have high frequency of earthquake. Therefore, the area of faulting controlled the pattern of the heat flow anomalies. Heat flow gradient in 135°direction indicated a major lithosphere transformation oceanward resulting from movement of the earth's material. In this paper, we described patterns of heat flow distribution in the Northwest Pacific, heat flow value changes in horizontal and vertical directions, combining the studies of Shi (1997) on the landforms of the island arcs in east Asia and plate movement, and the results of Shi and Zhang (1998) on heat simulation of subduction of active ocean mountain and the activity of islands arc. A preliminary model of geodynamics in the Northwest Pacific and its adjacent area was put forward. There is a great lateral heat flow gradient on the surface of the mantle between ocean and continent, which indicates that the materials in asthenosphere move from continent to ocean causing movement of the crust.

  5. Bomb Tritium in the Pacific Ocean

    International Nuclear Information System (INIS)

    During 1959--1973 bomb-produced tritium was monitored in surface seawater from 15 stations in the Pacific Ocean. Some 500 tritium determinations were carried out. Between 1965 and 1972 a series of subsurface samples from 49 locations in the Pacific Ocean was measured, and tritium concentrations as a function of depth were determined. The determinations had a standard error of +-4% and an uncertainty in the zero value of about 0.17 tritium unit. The most significant oceanographic conclusions that must be drawn from these data can be summarized in the following way: (1) Lateral flow along contours of constant density is the major factor controlling the tritium distribution in the surface and subsurface waters of the Pacific Ocean. Input of tritium into the water below the mixed layer occurs between 45 degree and 30 degree N and south of 60 degree S. The sinking of water in the mid-Pacific at 30 degree N and its flow toward the equator was previously recognized from the presence of a salinity maximum below the thermocline. The southward component of the rate of this flow is estimated to be 1.3+-0.5 cm/s. In many other areas the tritium content of water under the mixed layer is undoubtedly also due to local sinking of surface water and subsequent lateral subsurface flow. (2) An upper limit for the coefficient of vertical eddy diffusion can be calculated. This upper limit of 0.3 cm2/s is well below estimates derived by other methods, but it agrees well with the upper limit of 0.2 cm2/s derived from tritium measurements in the Sargasso Sea. It appears that transport across lines of constant density is much slower than previously assumed. (3) The mean lifetime of water in the mixed layer of the North Pacific Ocean varies greatly with geographical location. North of 10 degree N the average residence time is between 9 and 15 years, depending on the assumed rate of the molecular exchange of water between atmosphere and ocean

  6. The Late Cambrian Takaka Terrane, NW Nelson, New Zealand: Accretionary-prism development and arc collision followed by extension and fan-delta deposition at the SE margin of Gondwana

    Science.gov (United States)

    Pound, K. S.

    2013-12-01

    convergence, but is reinterpreted here as a ';true' fan-delta deposit, sedimentologically similar to deposits associated with extension. Textural and compositional data for the Lockett Conglomerate indicates rapid supply of new material (including quartzite, granite, gabbro, and amphibolitic metavolcanics). The Lockett Conglomerate is proposed here to record the initiation of extension, during which basement faults in the hinterland exposed previously buried source rocks. This new interpretation of the Lockett Conglomerate places that initiation of extension and subsequent passive margin sedimentation (Mt. Ellis and Mt. Arthur Groups) earlier (late Middle Cambrian) than previous work has suggested (Late Cambrian or Early Ordovician). These new interpretations provide input useful for correlations and interpretations of the complex mosaic that preserves a record of tectonic activity and processes at the Antarctic, Tasmanian and SE Australian portions of the Cambrian Gondwana margin.

  7. Collision-related Early Paleozoic evolution of a crustal fragment from the northern Gondwana margin (Slavonian Mountains, Tisia Mega-Unit, Croatia): Reconstruction of the P-T path, timing and paleotectonic implications

    Science.gov (United States)

    Balen, D.; Massonne, H.-J.; Petrinec, Z.

    2015-09-01

    An orthogneiss from the oldest metamorphic complex at Mt. Papuk (Tisia Mega-Unit, Croatia) enables the quantification of the P-T evolution of Early Paleozoic rocks of the Panonian Basin basement in contrast to neighboring peri-Gondwanan terrains which are significantly overprinted by pre-Variscan, Variscan, and Alpine events. Two different groups of Ce-rich monazite within oval-shaped corona microstructures have been observed. Age dating of the corona cores yielded two populations with average ages of 528 ± 7 (2σ) Ma and 465 ± 7 Ma, respectively. Furthermore, an Y-rich group, found inside garnet cores, was dated at 616 ± 23 Ma. Th-rich monazite included in garnet rims yielded an age of 491 ± 6 Ma. The youngest monazite group at 417 ± 20 Ma is located inside mica. The orthogneiss precursor was a calc-alkaline to high-K calc-alkaline igneous peraluminous crustal rock (diorite) from an active continental marginal setting. The calculated P-T pseudosection in the MnNCKFMASHTO system in combination with assemblage characteristics and mineral chemistry data provides good constraints on the P-T evolution: for stage I peak P-T conditions of 13 kbar and 670 °C were derived followed by stage II, which was characterized by moderate cooling accompanied by uplift to mid-crustal levels (5.2 kbar and 610 °C). Subsequently, the system cooled to 480 °C at ~ 4.4 kbar (stage III). Formation of titanite rims on ilmenite suggests further cooling to 4 kbar and 400 °C (stage IV). The clockwise P-T path implies exhumation from a tectonically thickened crustal setting (ca. 45 km depth at a geothermal gradient of ~ 15 °C/km) to mid-crustal levels (ca. 18 km) followed by cooling at depths < 14 km. Crustal thickening was due to the collision of a continental plate (Gondwana) with a smaller plate, which was underthrust.

  8. The impact of ancestral heath management on soils and landscapes: a reconstruction based on paleoecological analyses of soil records in the central and southeastern Netherlands

    Science.gov (United States)

    Doorenbosch, Marieke; van Mourik, Jan M.

    2016-07-01

    The evolution of heathlands during the Holocene has been registered in various soil records. Paleoecological analyses of these records enable reconstruction of the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation; in addition on that, the forest degradation accelerated due to cultural activities like forest grazing, wood cutting, and shifting cultivation. Heather plants invaded degraded forest soils, and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences, and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the late Neolithic, the Bronze Age, and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age, people probably continued with cattle grazing on the heaths and plaggic agriculture until the early Middle Ages. Severe forest degradation by the production of charcoal for melting iron during the Iron Age till the 6th-7th century and during the 11th-13th century for the trade of wood resulted in extensive sand drifting, a threat to the valuable heaths. The introduction of the deep, stable economy and heath sods digging in the course of the 18th century resulted in acceleration of the rise of plaggic horizons, severe heath degradation, and again extension of sand drifting. At the end of the 19th century heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into "new" arable fields and forests, and due to deep ploughing

  9. Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity

    Directory of Open Access Journals (Sweden)

    Spreadbury I

    2012-07-01

    Full Text Available Ian SpreadburyGastrointestinal Diseases Research Unit, Queen's University, Kingston, Ontario, CanadaAbstract: A novel hypothesis of obesity is suggested by consideration of diet-related inflammation and evolutionary medicine. The obese homeostatically guard their elevated weight. In rodent models of high-fat diet-induced obesity, leptin resistance is seen initially at vagal afferents, blunting the actions of satiety mediators, then centrally, with gastrointestinal bacterial-triggered SOCS3 signaling implicated. In humans, dietary fat and fructose elevate systemic lipopolysaccharide, while dietary glucose also strongly activates SOCS3 signaling. Crucially however, in humans, low-carbohydrate diets spontaneously decrease weight in a way that low-fat diets do not. Furthermore, nutrition transition patterns and the health of those still eating diverse ancestral diets with abundant food suggest that neither glycemic index, altered fat, nor carbohydrate intake can be intrinsic causes of obesity, and that human energy homeostasis functions well without Westernized foods containing flours, sugar, and refined fats. Due to being made up of cells, virtually all "ancestral foods" have markedly lower carbohydrate densities than flour- and sugar-containing foods, a property quite independent of glycemic index. Thus the "forgotten organ" of the gastrointestinal microbiota is a prime candidate to be influenced by evolutionarily unprecedented postprandial luminal carbohydrate concentrations. The present hypothesis suggests that in parallel with the bacterial effects of sugars on dental and periodontal health, acellular flours, sugars, and processed foods produce an inflammatory microbiota via the upper gastrointestinal tract, with fat able to effect a "double hit" by increasing systemic absorption of lipopolysaccharide. This model is consistent with a broad spectrum of reported dietary phenomena. A diet of grain-free whole foods with carbohydrate from cellular

  10. Pacific Decadal Variability and Central Pacific Warming El Niño in a Changing Climate

    Energy Technology Data Exchange (ETDEWEB)

    Di Lorenzo, Emanuele

    2015-02-27

    This research aimed at understanding the dynamics controlling decadal variability in the Pacific Ocean and its interactions with global-scale climate change. The first goal was to assess how the dynamics and statistics of the El Niño Southern Oscillation and the modes of Pacific decadal variability are represented in global climate models used in the IPCC. The second goal was to quantify how decadal dynamics are projected to change under continued greenhouse forcing, and determine their significance in the context of paleo-proxy reconstruction of long-term climate.

  11. Epidemiologic update of dengue in the Western Pacific Region, 2010

    OpenAIRE

    Arima, Yuzo; Matsui, Tamano

    2011-01-01

    Dengue is an emerging vectorborne infectious disease that is a major public health concern in the Asia Pacific region. Official dengue surveillance data for 2010 provided by ministries of health were summarized as part of routine activities of the World Health Organization Regional Office for the Western Pacific. Based on reported data, dengue has continued to show an increasing trend in the Western Pacific Region. In 2010, countries and areas reported a total of 353 907 dengue cases, of whic...

  12. Pacific Lamprey Research and Restoration : Annual Report 1996.

    Energy Technology Data Exchange (ETDEWEB)

    Jackson, Aaron D.

    1997-01-01

    The once abundant stocks of Pacific lamprey (Lampetra tridentata) above Bonneville Dam are currently depressed (Close et al. 1995). It is likely that many of the same factors that led to the decline of wild stocks of Columbia River Pacific salmon and steelhead have impacted Pacific lamprey populations. The Pacific lamprey is an important part of the food web of North Pacific ecosystems, both as predator and prey. Lamprey (a.k.a. eels) are also a valuable food and culture resource for American Indian Tribes of the Pacific Northwest. Depressed Pacific lamprey runs have impacted treaty secured fishing opportunities by forcing tribal members to gather this traditional food in lower Columbia River locations. The Pacific Lamprey Research and Restoration Project, funded by Bonneville Power Administration, is a cooperative effort between the Confederated Tribes of The Umatilla Indian Reservation, the Columbia River Intertribal Fish Commission, and Oregon State University with the goal to increase Pacific lamprey stocks above Bonneville Dam. The initial objectives of the project are to determine the past and current abundance of Pacific lamprey stocks in major mid Columbia tributaries and at various hydroelectric facilities, and to determine factors limiting Pacific lamprey abundance and distribution. Ultimately, Pacific lamprey restoration plans will be developed and implemented. Part (A)-CTUIR: (1) determine past and present abundance and distribution in NE Oregon and SE Washington tributaries; and (2) determine limiting habitat factors. Part (B)-CRITFC: (1) adult abundance monitoring at Columbia and Snake River dams; (2) juvenile abundance monitoring at Columbia and Snake River dams; and (3) juvenile passage impediments and needed improvements at Columbia and Snake River dams. Part (C)- OSU: (1) adult passage impediments and needed improvements at Columbia and Snake River dams; and (2) juvenile passage impediments and needed improvements at Columbia and Snake River dams.

  13. Synthesis of Pacific Ocean Climate and Ecosystem Dynamics

    OpenAIRE

    Emanuele Di Lorenzo; Vincent Combes; Julie Keister; P. Ted Strub; Thomas, Andrew C.; Peter J.S. Franks; Mark D. Ohman; Furtado, Jason C.; Annalisa Bracco; Bograd, Steven J.; Peterson, William T.; Schwing, Franklin B.; Sanae Chiba; Bunmei Taguchi; Samuel Hormazabal

    2013-01-01

    The goal of the Pacific Ocean Boundary Ecosystem and Climate Study (POBEX) was to diagnose the large-scale climate controls on regional transport dynamics and lower trophic marine ecosystem variability in Pacific Ocean boundary systems. An international team of collaborators shared observational and eddy-resolving modeling data sets collected in the Northeast Pacific, including the Gulf of Alaska (GOA) and the California Current System (CCS), the Humboldt or Peru-Chile Current System (PCCS), ...

  14. Preconditions for Sustainable Development of Pacific Russia Seaside Areas

    Institute of Scientific and Technical Information of China (English)

    P. Ya. Baklanov

    2011-01-01

    A geographical position and objective processes of globalization become leading factors of the orientation of the Russian east areas in the long-term development to interaction with the countries of the Asian-Pacific region (APR) and also to various natural resources and transport potential of the Pacific Ocean.In terms of economic-geographical attraction to the Pacific Ocean as a whole within Russia,it is possible to allocate three zones (Baklanov 2009):

  15. Natural Product Studies of Selected East Pacific Gorgonians

    OpenAIRE

    Bandurraga, Maury M.

    1982-01-01

    Gorgonian corals commonly occur in great numbers and diversity inthe Caribbean, east Pacific and Indo-Pacific. Previous natural pro­duct investigations of Caribbean gorgonians have yielded a plethora of structurally and biologically unique compounds. These include diter­penes, sesquiterpenes, sterols and prostaglandins. Prior to this inves­tigation, very little was known about the natural products composition of the east Pacific Gorgonacea. This dissertation reports the isolation and structur...

  16. Northwestern Pacific typhoon intensity controlled by changes in ocean temperatures

    OpenAIRE

    Mei, Wei; Xie, Shang-Ping; Primeau, François; Mcwilliams, James C.; Pasquero, Claudia

    2015-01-01

    Dominant climatic factors controlling the lifetime peak intensity of typhoons are determined from six decades of Pacific typhoon data. We find that upper ocean temperatures in the low-latitude northwestern Pacific (LLNWP) and sea surface temperatures in the central equatorial Pacific control the seasonal average lifetime peak intensity by setting the rate and duration of typhoon intensification, respectively. An anomalously strong LLNWP upper ocean warming has favored increased intensificatio...

  17. Pacific western boundary currents and their roles in climate.

    Science.gov (United States)

    Hu, Dunxin; Wu, Lixin; Cai, Wenju; Gupta, Alex Sen; Ganachaud, Alexandre; Qiu, Bo; Gordon, Arnold L; Lin, Xiaopei; Chen, Zhaohui; Hu, Shijian; Wang, Guojian; Wang, Qingye; Sprintall, Janet; Qu, Tangdong; Kashino, Yuji; Wang, Fan; Kessler, William S

    2015-06-18

    Pacific Ocean western boundary currents and the interlinked equatorial Pacific circulation system were among the first currents of these types to be explored by pioneering oceanographers. The widely accepted but poorly quantified importance of these currents-in processes such as the El Niño/Southern Oscillation, the Pacific Decadal Oscillation and the Indonesian Throughflow-has triggered renewed interest. Ongoing efforts are seeking to understand the heat and mass balances of the equatorial Pacific, and possible changes associated with greenhouse-gas-induced climate change. Only a concerted international effort will close the observational, theoretical and technical gaps currently limiting a robust answer to these elusive questions. PMID:26085269

  18. Transposon-mediated death of an ancestral A-23-like allele: evolution of TCR-positioning motifs in the HLA-A lineage.

    Science.gov (United States)

    Murray, Joseph S

    2015-08-01

    HLA-A alleles are characterized by tandem arginine and histidine/arginine motifs (i.e., R65 and H151R motifs) present on the α1- and α2-helix, respectively. In crystallographic structures, α/β T-cell receptors (TCR) contact both motifs and appear to be geometrically positioned for alloreactivity. Herein, bioinformatics of "dual-motif" MHC A-like alleles were investigated across phylogeny. While A-like alleles with the R65 motif are widespread, the H151R motif has segregated out of most species. Surprisingly, an uncharacterized orf in tarsiers (Loc-103275158) encodes R151 within a truncated A-23-like gene, which is in frame with short footprints of Tc5 and Tigger transposons (TE); the extant tarsier A-23 allele is totally missing exon-3 and part of exon-4; together, suggesting TE-mediated inactivation of an intact/ancestral A-23 allele. Since the only other (non-human) dual-motif A-like alleles are in gorilla, chimpanzee, and the Florida manatee, we speculate that dual-motif A alleles first emerged in the Afrotherian lineage and reappeared during the evolution of higher primates. PMID:26063599

  19. A recurrent laminin 5 mutation in British patients with lethal (Herlitz) junctional epidermolysis bullosa: evidence for a mutational hotspot rather than propagation of an ancestral allele.

    Science.gov (United States)

    Ashton, G H; Mellerio, J E; Dunnill, M G; Pulkkinen, L; Christiano, A M; Uitto, J; Eady, R A; McGrath, J A

    1997-05-01

    The three genes (LAMA3, LAB3 and LAMC2) that encode the anchoring filament protein, laminin 5, may all harbour pathogenetic mutations in the autosomal recessive blistering skin disorder, junctional epidermolysis bullosa (JEB). Recently, one particular mutation, R635X in the LAMB3 gene, has been found to account for approximately 40% of all JEB laminin 5 mutations (Kivirikko et al., Hum Mol Genet 1996; 5: 231-7). In this study, we assessed the frequency of this mutation in 12 British patients with lethal (Herlitz) JEB using PCR amplification of genomic DNA and restriction endonuclease digestion. The mutation R635X was fond in seven of 24 (29%) mutant alleles, confirming its relative frequency within the British gene pool. In addition, haplotype analysis using intragenic polymorphisms showed that the mutation arose on at least four different haplotype backgrounds, suggesting it represents a mutational hotspot rather than propagation of a common British ancestral allele. These findings support the hypermutable nature of this CpG dinucleotide and have implications in screening for laminin 5 gene mutations in British and other patients with JEB. PMID:9205497

  20. Migration of the Pee Dee River system inferred from ancestral paleochannels underlying the South Carolina Grand Strand and Long Bay inner shelf

    Science.gov (United States)

    Baldwin, W.E.; Morton, R.A.; Putney, T.R.; Katuna, M.P.; Harris, M.S.; Gayes, P.T.; Driscoll, N.W.; Denny, J.F.; Schwab, W.C.

    2006-01-01

    Several generations of the ancestral Pee Dee River system have been mapped beneath the South Carolina Grand Strand coastline and adjacent Long Bay inner shelf. Deep boreholes onshore and high-resolution seismic-reflection data offshore allow for reconstruction of these paleochannels, which formed during glacial lowstands, when the Pee Dee River system incised subaerially exposed coastal-plain and continental-shelf strata. Paleochannel groups, representing different generations of the system, decrease in age to the southwest, where the modern Pee Dee River merges with several coastal-plain tributaries at Winyah Bay, the southern terminus of Long Bay. Positions of the successive generational groups record a regional, southwestward migration of the river system that may have initiated during the late Pliocene. The migration was primarily driven by barrier-island deposition, resulting from the interaction of fluvial and shoreline processes during eustatic highstands. Structurally driven, subsurface paleotopography associated with the Mid-Carolina Platform High has also indirectly assisted in forcing this migration. These results provide a better understanding of the evolution of the region and help explain the lack of mobile sediment on the Long Bay inner shelf. Migration of the river system caused a profound change in sediment supply during the late Pleistocene. The abundant fluvial source that once fed sand-rich barrier islands was cut off and replaced with a limited source, supplied by erosion and reworking of former coastal deposits exposed at the shore and on the inner shelf.

  1. Distribution of KIR genes in the population of unrelated individuals homozygous for ancestral haplotype AH8.1 (HLA-A1B8DR3).

    Science.gov (United States)

    Jindra, P; Venigová, P; Lysák, D; Steinerova, K; Koza, V

    2010-09-01

    Despite the independent segregation of genes encoding killer immunoglobulin-like receptor (KIR) and human leukocyte antigen (HLA), there is some evidence of some kind of co-evolution. Therefore, one could expect reduced KIR diversity within the HLA restricted population. A total of 41 unrelated individuals homozygous for ancestral HLA haplotype AH8.1 (HLA-A*0101-Cw*0701-B*0801-DRB1*0301-DQB1*0201) were genotyped for KIRs. Over all, 14 different genotypes were identified. The KIR genes and genotypes repertoire generally mirror the published frequencies in Caucasians. Except for KIR2DS4, all activating genes presented frequencies below 50%. KIR2DS5 was the least frequent among activating genes (17%), whereas KIR2DL5 (37%) among inhibitory ones. The most frequent (39%) was AA genotype. Twenty-two individuals (54%) had a copy of KIR haplotypes A and B (AB genotype), whereas three (7%) were homozygous for B (BB genotype). Nine of fourteen reported genotypes occurred only in one individual. Five genotypes were reported in less than twenty individuals worldwide and one genotype was reported so far only once. Conversely, the three most frequent genotypes account for 68% of all detected genotypes. The results show the unrestricted KIR diversity in this HLA uniform group and support the fact that the driving force for KIR evolution is not exclusively a major histocompatibility complex. PMID:20492596

  2. Leptospirosis in the Asia Pacific region

    Directory of Open Access Journals (Sweden)

    Coulombe Caroline

    2009-09-01

    Full Text Available Abstract Background Leptospirosis is a worldwide zoonotic infection that has been recognized for decades, but the problem of the disease has not been fully addressed, particularly in resource-poor, developing countries, where the major burden of the disease occurs. This paper presents an overview of the current situation of leptospirosis in the region. It describes the current trends in the epidemiology of leptospirosis, the existing surveillance systems, and presents the existing prevention and control programs in the Asia Pacific region. Methods Data on leptospirosis in each member country were sought from official national organizations, international public health organizations, online articles and the scientific literature. Papers were reviewed and relevant data were extracted. Results Leptospirosis is highly prevalent in the Asia Pacific region. Infections in developed countries arise mainly from occupational exposure, travel to endemic areas, recreational activities, or importation of domestic and wild animals, whereas outbreaks in developing countries are most frequently related to normal daily activities, over-crowding, poor sanitation and climatic conditions. Conclusion In the Asia Pacific region, predominantly in developing countries, leptospirosis is largely a water-borne disease. Unless interventions to minimize exposure are aggressively implemented, the current global climate change will further aggravate the extent of the disease problem. Although trends indicate successful control of leptospirosis in some areas, there is no clear evidence that the disease has decreased in the last decade. The efficiency of surveillance systems and data collection varies significantly among the countries and areas within the region, leading to incomplete information in some instances. Thus, an accurate reflection of the true burden of the disease remains unknown.

  3. Place in Pacific Islands Climate Education

    Science.gov (United States)

    Barros, C.; Koh, M. W.

    2015-12-01

    Understanding place, including both the environment and its people, is essential to understanding our climate, climate change, and its impacts. For us to develop a sense of our place, we need to engage in multiple ways of learning: observation, experimentation, and opportunities to apply new knowledge (Orr, 1992). This approach allows us to access different sources of knowledge and then create local solutions for local issues. It is especially powerful when we rely on experts and elders in our own community along with information from the global community.The Pacific islands Climate Education Partnership (PCEP) is a collaboration of partners—school systems, nongovernmental organizations, and government agencies—working to support learning and teaching about climate in the Pacific. Since 2009, PCEP partners have been working together to develop and implement classroom resources, curriculum standards, and teacher professional learning opportunities in which learners approach climate change and its impacts first through the lens of their own place. Such an approach to putting place central to teaching and learning about climate requires partnership and opportunities for learners to explore solutions for and with their communities. In this presentation, we will share the work unfolding in the Republic of the Marshall Islands (RMI) as one example of PCEP's approach to place-based climate education. Three weeklong K-12 teacher professional learning workshops took place during June-July 2015 in Majuro, RMI on learning gardens, climate science, and project-based learning. Each workshop was co-taught with local partners and supports educators in teaching climate-related curriculum standards through tasks that can foster sense of place through observation, experimentation, and application of new knowledge. Additionally, we will also share PCEP's next steps in place-based climate education, specifically around emerging conversations about the importance of highlighting

  4. Tracking and Reconstructing the Interdecadal Pacific Oscillation

    Science.gov (United States)

    Henley, Benjamin; Gergis, Joelle; Karoly, David

    2015-04-01

    A new index is developed for the Interdecadal Pacific Oscillation, termed the IPO Tripole Index (TPI). The IPO is associated with a distinct 'tripole' pattern of sea surface temperature anomalies (SSTA), with three large centres of action and variations on decadal timescales, evident in the second principal component (PC) of low-pass filtered global SST. The new index is based on the difference between the SSTA averaged over the central equatorial Pacific and the average of the SSTA in the Northwest and Southwest Pacific. The TPI is an easily calculated, non-PC based index for tracking decadal SST variability associated with the IPO. The TPI time series bears a close resemblance to previously published PC-based indices and has the advantages of being simpler to compute and more consistent with methods used to track the El Niño-Southern Oscillation (ENSO), such as the Niño 3.4 and Trans Niño Indices. The TPI also provides a simple metric, with physical units of °C, for evaluating decadal and interdecadal variability of SST fields in a straightforward manner, and can be used to evaluate the skill of dynamical decadal prediction systems. Composites of SST and mean sea level pressure anomalies reveal that the IPO has maintained a broadly stable structure across the seven most recent positive and negative epochs that occurred during 1870-2013. The TPI is shown to be a robust and stable representation of the IPO phenomenon in instrumental records, with relatively more variance in decadal than shorter timescales compared to Niño 3.4, due to the explicit inclusion of off-equatorial SST variability associated with the IPO. This presentation will also report on progress towards developing a new multi-proxy reconstruction of the IPO over the last several centuries, along with an assessment of the TPI in climate models.

  5. Flexure and rheology of Pacific oceanic lithosphere

    Science.gov (United States)

    Hunter, Johnny; Watts, Tony

    2016-04-01

    The idea of a rigid lithosphere that supports loads through flexural isostasy was first postulated in the late 19th century. Since then, there has been much effort to investigate the spatial and temporal variation of the lithosphere's flexural rigidity, and to understand how these variations are linked to its rheology. We have used flexural modelling to first re-assess the variation in the rigidity of oceanic lithosphere with its age at the time of loading, and then to constrain mantle rheology by testing the predictions of laboratory-derived flow laws. A broken elastic plate model was used to model trench-normal, ensemble-averaged profiles of satellite-derived gravity at the trench-outer rise system of circum-Pacific subduction zones, where an inverse procedure was used to find the best-fit Te and loading conditions. The results show a first-order increase in Te with plate age, which is best fit by the depth to the 400 ± 35°C plate-cooling isotherm. Fits to the observed gravity are significantly improved by an elastic plate that weakens landward of the outer rise, which suggests that bending-induced plate weakening is a ubiquitous feature of circum-Pacific subduction zones. Two methods were used to constrain mantle rheology. In the first, the Te derived by modelling flexural observations was compared to the Te predicted by laboratory-derived yield strength envelopes. In the second, flexural observations were modelled using elastic-plastic plates with laboratory-derived, depth-dependent yield strength. The results show that flow laws for low-temperature plasticity of dry olivine provide a good fit to the observations at circum-Pacific subduction zones, but are much too strong to fit observations of flexure in the Hawaiian Islands region. We suggest that this discrepancy can be explained by differences in the timescale of loading combined with moderate thermal rejuvenation of the Hawaiian lithosphere.

  6. Energy resources of Pacific Coast of Colombia

    Energy Technology Data Exchange (ETDEWEB)

    Bueno Salazar, R.

    1986-07-01

    Despite failure of modest exploration efforts to yield commercial hydrocarbon production in the Choco-Pacific coastal basin of Colombia, recent geophysical, geochemical, and surface geologic investigations indicate a potential for petroleum accumulations, which could be related to fields located on the western basins of Ecuador that in fact constitute an extension of the Colombian Pacific geologic scheme. The Choco-Pacific coastal basin of Colombia covers an area of approximately 70,000 km/sup 2/, of which 14,000 km/sup 2/ lies offshore. The structural style of this area corresponds to a convergent plate basin created over folded oceanic sediments and adjacent to the subduction zone. Such a framework could be conducive to an attractive array of potential hydrocarbon-bearing traps. Geochemical knowledge of potential source rocks of Cretaceous and early Tertiary age confers an added attraction to the area. Most evaluations reveal kerogen-rich, gas-prone organic matter. Nevertheless, the existence of oil seeps from Cretaceous outcrops could indicate sufficient thermal maturity for oil generation. Adequate reservoirs could be found in sandy or calcareous rocks of late Eocene to Oligocene age, predominantly of marine origin with an estimated thickness exceeding 20,000 ft. Colombia has been one of the leading world producers of gold and platinum, mostly derived from the vast alluvial cover of the onshore area of the basin. In rocks cropping out in the Western Cordillera (eastern margin of the basin), deposits of potentially commercial value of porphyry copper and molybdenum, as well as massive sulfur, manganese, and bauxite, have been found.

  7. Pacific Bridges: The New Immigration from Asia and the Pacific Islands.

    Science.gov (United States)

    Fawcett, James T., Ed.; Carino, Benjamin V., Ed.

    The following papers are collected in this anthology of research on East-West international migration: (1) "International Migration and Pacific Basin Development" (James T. Fawcett and Benjamin V. Carino); (2) "The Global Picture of Contemporary Immigration Patterns" (Mary M. Kritz); (3) "One Field, Many Views: Competing Theories of International…

  8. 78 FR 61840 - Pacific Fishery Management Council (Pacific Council); Public Meetings

    Science.gov (United States)

    2013-10-04

    ... business. ADDRESSES: Meetings of the Pacific Council and its advisory entities will be held at the Hilton....m. PT or when business for the day is complete. Only the audio portion, and portions of the.... Sablefish Permit Stacking Program Review Scoping 3. Stock Complex Restructuring 4. Stock Assessments...

  9. 78 FR 23539 - National Marine Fisheries Service, Pacific Fishery Management Council (Pacific Council); May 6...

    Science.gov (United States)

    2013-04-19

    ..., electronic monitoring, allocation review process, Department of Commerce Office of the Inspector General... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE...), Commerce. ACTION: Notice of public meetings. SUMMARY: The Pacific Council will host a meeting of...

  10. Nuclear Deterrence in Asia and the Pacific

    OpenAIRE

    Gareth Evans

    2013-01-01

    The Asia Pacific region includes six of the world’s nine nuclear-armed states, and in all of them relevant policymakers, still caught in a Cold War mindset, continue to believe in nuclear deterrence as a force for peace and stability, perceiving nuclear disarmament to be not only unachievable, but undesirable. But — whether the context is major powers seeking to neutralise threats from each other (United States, Russia, China and India), non-nuclear allies seeking nuclear protection from ...

  11. Pacific Northwest Storms Situation Report # 3

    Energy Technology Data Exchange (ETDEWEB)

    None

    2006-12-17

    Significant progress has been made in restoring power to customers in the Pacific Northwest region. Currently, 468,200 customers, including Canada, remain without power. This is down from 1.8 million customers who lost power following severe wind and snow storms on December 14-15, 2006. The customers without power represent about 16 percent of customers in the affected utility service areas of Oregon and Washington. See table below. The Olympic pipeline reports that the pipeline is operational; however, pipeline throughput remains reduced since one substation along the line remains without power. Complete power restoration is expected later today. There are no reports of problems regarding fuel distribution and production.

  12. On the trail of the Pacific Teal

    International Nuclear Information System (INIS)

    The passage of the Pacific Teal, a ship specially designed to transport high level radioactive wastes, from France to Japan aroused some opposition within New Zealand. While Greenpeace persisted in referring to it as a plutonium ship, it was in fact carrying vitrified waste. The media discussion about this type of shipment is based largely upon misinformation. The risks of human exposure and environmental damage posed by shipments of HLW cargoes are miniscule in relation to those posed by the more frequent and familiar transportation of oil cargoes. (author)

  13. The Southern Ocean and South Pacific Region

    OpenAIRE

    Kelleher, K.; Warnau, Michel; Failler, Pierre; Pecl, Gretta; Turley, Carol; Boeuf, Gilles; Laffoley, Dan; Parker, Laura; Gurney, Leigh

    2012-01-01

    The Region comprises three sub-regions (FAO Statistical Areas) with very different characteristics. The South Pacific includes the vast and virtually unpopulated Southern Ocean surrounding the Antarctic. It has the world’s largest fisheries off Peru and Chile and some of the world’s best managed fisheries in Australia and New Zealand. The Region has over 27% of the world’s ocean area and over 98% of the Region’s total area of 91 million km2 is ‘open ocean’. The Region contains less than 5% of...

  14. The Asia-Pacific Strategic Triangle

    DEFF Research Database (Denmark)

    Schmidt, Johannes Dragsbæk

    2014-01-01

    The objective of this paper is to give insight into the debate over the strategic triangle and how it impacts conflict and security in South Asia. First the new geopolitical motives of the United States in the Asia-Pacific are outlined. Then the concept of strategic triangle is elaborated and its...... foreign policy calculations and moves in the strategic triangle; and finally, some concluding remarks are offered to explain the recent shifts in interactions between these core players in the emerging world order and whether a new geopolitical architecture is emerging...

  15. Monitoring cetaceans in the North Pacific

    OpenAIRE

    Stafford, Kathleen M.

    2009-01-01

    Two projects were undertaken in order to monitor cetaceans in the North Pacific. The first was designed to obtain passive acoustic data from the U.S. Navy's Northern Edge Range. Three instruments were deployed in April 2008 to monitor both high (up to 25 kHz) and low (up to 1 kHz) frequencies for odontocetes and mysticetes, respectively. Unfortunately, these instruments did not record any data. The second project was to analyses retrospective data obtained by analysts at the Whidbey Island N...

  16. 1999 Pacific Northwest Loads and Resources Study.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    1999-12-01

    The Pacific Northwest Loads and Resources Study (White Book) is published annually by BPA and establishes the planning basis for supplying electricity to customers. It serves a dual purpose. First, the White Book presents projections of regional and Federal system load and resource capabilities, along with relevant definitions and explanations. Second, the White Book serves as a benchmark for annual BPA determinations made pursuant to its regional power sales contracts. Specifically, BPA uses the information in the White Book for determining the notice required when customers request to increase or decrease the amount of power purchased from BPA. The White Book will not be used in calculations for the 2002 regional power sales contract subscription process. The White Book compiles information obtained from several formalized resource planning reports and data submittals, including those from the Northwest Power Planning Council (Council) and the Pacific Northwest Utilities Conference Committee (PNUCC). The White Book is not an operational planning guide, nor is it used for determining BPA revenues. Operation of the Federal Columbia River Power System (FCRPS) is based on a set of criteria different from that used for resource planning decisions. Operational planning is dependent upon real-time or near-term knowledge of system conditions, including expectations of river flows and runoff, market opportunities, availability of reservoir storage, energy exchanges, and other factors affecting the dynamics of operating a power system. In this loads and resources study, resource availability is compared with a medium forecast of electricity consumption. The forecasted future electricity demands--firm loads--are subtracted from the projected capability of existing and ''contracted for'' resources to determine whether BPA and the region will be surplus or deficit. If Federal system resources are greater than loads in any particular year or month, there is

  17. Asia-Pacific Security: Policy Challenges

    OpenAIRE

    Lovell, David W.

    2013-01-01

    Since September 11, 2001, our newspapers have been filled with the ‘war on terror’; our governments have mobilised their resources for ‘homeland security’; and people everywhere are braced for more terrorist attacks. Yet while the new threat is genuine, we must not lose sight of the continuing security concerns in the Asia-Pacific. Tensions persist on the Korean peninsula, in the Taiwan Straits and the South China Sea, and in Kashmir. The region is well supplied with weapons of mass destr...

  18. Water Chemistry of the U.S. Pacific Reefs from Water Samples collected since 2012

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Pacific Reef Assessment and Monitoring Program (Pacific RAMP), established by the Coral Reef Ecosystem Program (CREP) at the NOAA Pacific Islands Fisheries...

  19. Pacific issues of biodiversity, health and nutrition.

    Science.gov (United States)

    Englberger, Lois; Lorens, Adelino; Guarino, Luigi; Taylor, Mary; Snowdon, Wendy; Maddison, Marie; Mieger, Judy; Thomson, Lex; Lippwe, Kipier; Rimon, Betarim; Fitzgerald, Maureen H; Tibon, Jorelik; Sohhrab, Sepehr; Ehmes, Okean; Rally, Jim; Shed, Patterson

    2007-09-01

    Neglect of traditional food systems has led to serious nutrition and health problems throughout the Pacific Islands. At the same time, there is concern about the loss of traditional knowledge, customs and culture related to local foods, and of biodiversity. However, there is still a great diversity of nutrient-rich local food crops in the Pacific, along with considerable knowledge about these foods, their methods of production, harvesting, storage, and preparation. An integrated approach is needed in order to make a meaningful impact on increased production, marketing/processing and use of local food crops and foods for better health and nutrition, requiring greater collaboration between the health sector and agencies in other sectors. Priorities for action include: documentation and assessment of traditional food systems, including analysis of local foods and crop varieties for their nutrient content; innovative means of increasing awareness of the values of local foods among the general public and policy makers; conservation of rare varieties of crops and food trees and protection of the environment; and an increased focus on small-scale processing and marketing of local foods. Overriding all of this is the urgent need to mainstream consideration of these important issues into relevant national and regional policies. The rubric "Biodiversity for Health and Nutrition" incorporates all of these issues and provides a framework within which all partner agencies can be involved. PMID:19588616

  20. Breastfeeding practices in the Pacific Basin.

    Science.gov (United States)

    1985-01-01

    Forces of modernization, aggressive marketing on the part of infant formula companies, and an equation of bottle-feeding with sophistication all contributed to a decline in the prevalence of breastfeeding in the Pacific Basin. However, a return to breastfeeding is currently being spearheaded by better educated mothers and supported by health workers. Breastfeeding promotion will be a major emphasis of the Pacific Basin Maternal and Child Health Resource Center in its 1st year of operation. Specifically, a Breastfeeding Package containing a brochure, staff training materials, public education resources, and a model bill is being prepared. The patient brochure will be translated in local vernacular for each jurisdiction. Staff training materials will focus on the development of patient education skills and help with the management of lactating women. Public education and promotional efforts will also be undertaken through the educational system and the mass media. Finally, a model bill supporting the promotion of breastfeeding will be provided to each jurisdiction. Among provisions suggested are flex-time maternity leave to allow mothers to nurse their infants. PMID:12281757

  1. THE "COMFORT WOMEN" OF THE PACIFIC WAR

    Directory of Open Access Journals (Sweden)

    JULIA YURI OKAMOTO

    2013-12-01

    Full Text Available During the pacific war, about 80 to 200 thousand women were mobilized by the Japanese imperial army to sexually serve its soldiers, in one of world’s largest cases of human trafficking. Most of the victims, euphemistically known as "comfort women", came from Korea, Japan's colony at the time, and was attracted by false promises of employment or simply kidnapped by Japanese troops. Taken to military brothels throughout the pacific, they were subjected to repeated rape and beatings. Some of them, as young as age 12, were daily forced to have sex with Japanese soldiers, 10, 30, 50 times a day. The few women who survived and were able to return home at the end of the war continued to suffer for their past, through psychological trauma and social ostracism. They remained silent about their experience because of fear and shame. These women would have like to live in peace, being wives, mothers, sisters, grandmothers ... but this choice was denied to all. None received any compensation from the Japanese government official, who continues to evade its legal and moral responsibilities regarding war crime. Sixty-eight years later, they are still waiting for justice.

  2. 2011 minerals yearbook: Asia and the Pacific

    Science.gov (United States)

    Fong-Sam, Yolanda; Kuo, Chin S.; Shi, Lin; Tse, Pui-Kwan; Wacaster, Susan; Wilburn, David R.

    2013-01-01

    The 31 countries and territories of the Asia and the Pacific region reported on in the Minerals Yearbook have a total area of about 30 million square kilometers, which accounts for about 20.1% of the world total. data and information for the majority of this report do not include Kiribati, Maldives, the Marshall islands, the federated states of Micronesia, Palau, tongo, or Vanuatu. the total population was about 3.9 billion, which accounted for 55.6% of the world total in 2011. china and india, which were the world’s two most populous countries, accounted for 66.7% of the region’s total population. the real gross domestic product (GdP) growth rate of 30 of the region’s countries increased in 2011 compared with that of 2010 whereas that of only one country, Japan, was reported to have decreased (by 0.8%). the GdP of 17 of the 31 countries and territories of the Asia and Pacific region increased by at least 5% in 2011, but for many countries the growth rate was lower than in 2010. the GdP of Mongolia, which was the country with the largest GdP growth in 2011, increased by 17.5% in 2011 compared with an increase of 6.4% in 2010 and a decrease of 1.3% in 2009 (tables 1, 2).

  3. Philopatry and migration of Pacific white sharks.

    Science.gov (United States)

    Jorgensen, Salvador J; Reeb, Carol A; Chapple, Taylor K; Anderson, Scot; Perle, Christopher; Van Sommeran, Sean R; Fritz-Cope, Callaghan; Brown, Adam C; Klimley, A Peter; Block, Barbara A

    2010-03-01

    Advances in electronic tagging and genetic research are making it possible to discern population structure for pelagic marine predators once thought to be panmictic. However, reconciling migration patterns and gene flow to define the resolution of discrete population management units remains a major challenge, and a vital conservation priority for threatened species such as oceanic sharks. Many such species have been flagged for international protection, yet effective population assessments and management actions are hindered by lack of knowledge about the geographical extent and size of distinct populations. Combining satellite tagging, passive acoustic monitoring and genetics, we reveal how eastern Pacific white sharks (Carcharodon carcharias) adhere to a highly predictable migratory cycle. Individuals persistently return to the same network of coastal hotspots following distant oceanic migrations and comprise a population genetically distinct from previously identified phylogenetic clades. We hypothesize that this strong homing behaviour has maintained the separation of a northeastern Pacific population following a historical introduction from Australia/New Zealand migrants during the Late Pleistocene. Concordance between contemporary movement and genetic divergence based on mitochondrial DNA demonstrates a demographically independent management unit not previously recognized. This population's fidelity to discrete and predictable locations offers clear population assessment, monitoring and management options. PMID:19889703

  4. The Tropical Western Pacific: Status report

    International Nuclear Information System (INIS)

    The Atmospheric Radiation Measurement (ARM) Program's Tropical Western Pacific (TWP) locale is the second of the five primary Cloud and Radiation Testbeds (CART) to be established. Phase implementation is currently planned to begin in 1994. The TWP locale encompasses an immense region of the tropical western Pacific bounded roughly by 10 degrees N to 10 degrees S extending eastward from Indonesia to somewhat east of the international dateline. Climatogically, it is characterized by warm sea surface temperatures, deep and frequent atmospheric convection, high rain rates, strong coupling between the atmosphere and ocean, and substantial variability associated with the El Nino-Southern Oscillation (ENSO) phenomenon. Any number of diagnostic studies can be cited that show the relationship between climatic variability in this region, particularly ENSO, and variability in other parts of the planet. Geographically, this locale is characterized by the maritime continent area in the southwest portion and essentially open ocean in the northeast portion. Details on the locale and the scientific challenges are presented in the proceedings of the second ARM Science Team meeting held in Denver in October 1991 (Clements et al. 1992). The purpose of this paper is to report on activities since the 1991 Science Team meeting and discusses future plans

  5. Information for Authors Asian Pacific Journal of Tropical Biomedcine

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    <正>GENERALAsian Pacific Journal of Tropical Biomedicine is sponsored by Asian Pacific Tragical Medicine Press and aims to set up an academic communicating platform for Chinese and scientists all over the world on tropical biomedicine and related sciences.The Journal invites concise reports of original research in all areas of tropical biomedicine and related fields,both experimental and clinical.

  6. Information for Authors Asian Pacific Journal of Tropical Biomedcine GENERAL

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    Asian Pacific Journal of Tropical Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and Hainan Medical University Journal Publisher,and aims to set up an acdemic communicating platform for Chinese and scientists all over the world on tropical biomedicine and reluted sciences.

  7. Information for Authors Asian Pacific Journal of Tropical Biomedcine

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    <正>GENERALA sian Pacific Journal of Tropical Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and Hainan Medical University Journal Publisher.and aims to set up an acdemic communicating platform for Chinese and scientists all over the world on tropical biomedicine and related sciences.

  8. Information for Authors Asian Pacific Journal of Tropical Biomedcine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    GENERAL Asian Pacific Journal of Tropical Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and Hainan Medical University Journal Publisher.and aims to set up an acdemic communicating platform for Chinese and scientists all over the world on tropical biomedicine and related sciences.

  9. Information for Authors Asian Pacific Journal of Tropical Biomedcine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    GENERAL Asian Pacific Journal of Tropical Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and Hainan Medical University Journal Publisher,ana aims to set up an acdemic communicating platform for Chinese and scientists all over the world on tropical biomedicine and related sciences.The Journal invites concise reports of original research in all areas of

  10. Information for Authors Asian Pacific Journal of Tropical Biomedcine

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    GENERAL Asian Pacific Journal of Tropical Biomcdicinc is sponsored by Asian Pacific Tropical Medicine Press and Hainan Medical University Journal Publisher,and aims to set up an acdemic communicating platform for Chinese and scientists all over the world on tropical biomedicine and related sciences.The Journal invites concise reports of original research in all areas of tropical biomedicine

  11. Asian Pacific American Mental Health Needs for the Future.

    Science.gov (United States)

    Okura, K. Patrick

    Recommendations made by a Special Subpanel on Mental Health of Asian and Pacific Americans of the President's Commission on Mental Health are discussed in this paper. The subpanel determined that racism is the most pervasive mental health problem confronting Asian and Pacific Americans. The nine recommendations made by the subpanel focus on social…

  12. Getting to Know Education in the Pacific Region

    Science.gov (United States)

    Regional Educational Laboratory Pacific, 2014

    2014-01-01

    The Pacific region is comprised of American Samoa, the Commonwealth of the Northern Mariana Islands (CNMI); the Federated States of Micronesia (FSM)-Chuuk, Kosrae, Pohnpei, and Yap; Guam; Hawai'i; the Republic of the Marshall Islands; and the Republic of Palau. This document begins by providing a map of the REL Pacific region overlaid on a map of…

  13. 75 FR 11118 - Fisheries of the Pacific Region

    Science.gov (United States)

    2010-03-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XU49 Fisheries of the Pacific Region AGENCY... Region, the petrale sole stock has been determined to be in an overfished condition. The Pacific...

  14. 78 FR 25956 - Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2013-05-03

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE... Fisheries Science Center, at 8901 La Jolla Shores Dr., La Jolla, CA 92037-1508. Council Address: Pacific... implementation plan for changing the start date of the Pacific sardine fishery, from January 1 to July 1....

  15. Pacific Lamprey Research and Restoration Project : Annual Report 2000.

    Energy Technology Data Exchange (ETDEWEB)

    Close, David A.

    2002-11-01

    This report summarizes results of research activities conducted in 1999-2000. The findings in these chapters represent the efforts of the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) and collaborative efforts among other researchers working on Pacific lampreys (Lampetra tridentata) under this project. The findings in these chapters will help management and recovery of Pacific lampreys in the Columbia River Basin.

  16. Shaping Education Policy Research in an Asia-Pacific Context

    Science.gov (United States)

    Jeong, Dong Wook; Lee, Ho Jun; Lee, Seung Ho; Wi, Eunjoo

    2014-01-01

    Globalization increasingly calls for comparing educational policies across countries. In this study, we assemble and analyze academic journal publications of the past decade in order to shape education policy research within an Asia-Pacific context. After examining Asia-Pacific research publication data from the Web of Science, we find a few…

  17. Pacific Health Research Guidelines: The Cartography of an Ethical Relationship

    Science.gov (United States)

    Mila-Schaaf, Karlo

    2009-01-01

    In 2004 the Health Research Council of New Zealand (HRC) published a set of "Guidelines on Pacific health research". The Guidelines were an attempt to articulate the features of ethical research relationships with Pacific peoples living in Aotearoa New Zealand. This article describes the process of developing these guidelines, using Pacific…

  18. Festival of Pacific Arts: Education in Multi-Cultural Encounters

    Science.gov (United States)

    d'Hauteserre, Anne-Marie

    2011-01-01

    Can acts of support and/or revival of Pacific cultures serve to educate international tourists about Indigenous cultures? This paper examines, from a postcolonial perspective and using a qualitative methodology, whether the Festivals of Pacific Arts, to which all nations send delegations, can educate visitors about Indigenous cultures of the…

  19. 7 CFR 1124.2 - Pacific Northwest marketing area.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Pacific Northwest marketing area. 1124.2 Section 1124.2 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and Orders; Milk), DEPARTMENT OF AGRICULTURE MILK IN THE PACIFIC NORTHWEST MARKETING AREA...

  20. 78 FR 32624 - Western Pacific Fishery Management Council; Public Meetings

    Science.gov (United States)

    2013-05-31

    ... Wrasse Status Review 3. Green Turtle Status Review 4. North Pacific Humpback Whale Petition 5. Shark Petitions 6. Proposed 2013 MMPA List of Fisheries D. Report of the False Killer Whale Take Reduction Team... Status Review 4. North Pacific Humpback Whale Petition 5. Shark Petitions 6. Proposed 2013 List...

  1. 77 FR 33195 - Western Pacific Fishery Management Council; Public Meetings

    Science.gov (United States)

    2012-06-05

    .... Hawaiian Green Sea Turtle Petition Finding C. North Pacific Humpback Whale Populations in Alaska D. Options... Spatial Management Tool G. FAD Design and Locations H. Public Comment I. FAD Discussion and...., Wednesday, June 27, 2012 8. Protected Species A. North Pacific Humpback Whale Population in Alaska B....

  2. University community celebrates Asian Pacific American Heritage Month

    OpenAIRE

    Williams, Meghan

    2009-01-01

    The Virginia Tech community celebrates Asian Pacific American Heritage Month, April 1-30. Typically recognized throughout the United States in the month of May, Virginia Tech celebrates the Asian and Pacific Islander culture in April in order to provide educational and entertainment programs for students before they leave campus for summer break.

  3. The oldest sediments of Greece revealed by detrital zircon LA-ICP-MS U-Pb dating: Cambro-Ordovician sandstones from northern Gondwana in the External Hellenides - implications on the evolution of the eastern Mediterranean

    Science.gov (United States)

    Kydonakis, Konstantinos; Kostopoulos, Dimitrios; Poujol, Marc; Brun, Jean-Pierre; Papanikolaou, Dimitrios; Paquette, Jean-Louis

    2013-04-01

    (Elat locality) and Jordan (El-Quweira locality). Their zircon age spectra plotted with respect to sediment depositional age indicate a collisional margin setting for all. Evaluating the depositional setting of the arguably similar sedimentary sequences above we demonstrate their common provenance from the Gondwana Super-fan System which draped the northern Gondwanan periphery from ~525 to 460 Ma (Lower Cambrian - Middle Ordovician). Using as anchoring points the non-metamorphosed Early Palaeozoic outcrops of Libya and the Middle East that remained intact at their original deposition sites we have traced, in space and time, the path of the remainder time- and facies-equivalent rocks presently cropping out in the Hellenic and Turkish mountain belts. The fate of the northern Gondwanan margin was multiple rifting and travelling of the fragments thereof throughout the Palaeozoic before their final incorporation into younger orogenic belts.

  4. Pacific Lamprey Research and Restoration Project : Annual Report 2001.

    Energy Technology Data Exchange (ETDEWEB)

    Close, David A.

    2002-11-01

    Pacific lamprey (Lampetra tridentata) has significantly declined along the Oregon coast and in the Columbia River Basin (Downey et al. 1993; Close and Jackson 2001). Declines in adults can be partially attributed to hydroelectric dams, which have impeded passage of adult Pacific lamprey in the Columbia and Snake rivers, thus effecting larval recruitment in the basin. Adult pacific lamprey also declined in numbers in the Umatilla River, a tributary of the Columbia River. In addition to hydro power dams in the Columbia River, habitat alterations and chemical treatments have been involved in the collapse of Pacific lamprey populations in the Umatilla River. To initiate the restoration effort, CTUIR began developing a restoration plan in 1998. The goal of the lamprey research and restoration project is to restore natural production of Pacific lampreys in the Umatilla River to self-sustaining and harvestable level. This report is summarizing the studies and restoration efforts concluded in 2001.

  5. PHANEROZOIC INHOMOGENEOUS REHEATING OF UPPER MANTLE RESPONSIBLE FOR PACIFIC GENESIS

    Institute of Scientific and Technical Information of China (English)

    Takao YANO; WU Gen-yao

    2001-01-01

    The late Mesozoic two giant events that have synchronously occurred in the Pacific and periphery are the tectono-magmatic activities of the Circum-Pacific mobile belt and the Darwin Rise.Their dynamics analysis indicates that the geodynamics responsible for Pacific genesis has been driven by the gravity instability between a Pacific-wide superplume head and its lithospheric overburden under the influence of eastward asthenospheric flow by the Earth spin.The worldwide activation of mafic magmatism was initiated in the Paleozoic and climaxed around the Jurassic.The separated not worldwide distribution of the magmatism on the Earth suggests the inhomogeneous reheating of upper mantle,as represented by the Pacific-wide superplume head. The Phanerozoic reheating thus put forward the Earth history into a new geotectonic stage,i.e.,the diwa stage.

  6. Geographic variation in Pacific herring growth in response to regime shifts in the North Pacific Ocean

    Science.gov (United States)

    Ito, Shin-ichi; Rose, Kenneth A.; Megrey, Bernard A.; Schweigert, Jake; Hay, Douglas; Werner, Francisco E.; Aita, Maki Noguchi

    2015-11-01

    Pacific herring populations at eight North Pacific Rim locations were simulated to compare basin-wide geographic variations in age-specific growth due to environmental influences on marine productivity and population-specific responses to regime shifts. Temperature and zooplankton abundance from a three-dimensional lower-trophic ecosystem model (NEMURO: North Pacific Ecosystem Model for Understanding Regional Oceanography) simulation from 1948 to 2002 were used as inputs to a herring bioenergetics growth model. Herring populations from California, the west coast of Vancouver Island (WCVI), Prince William Sound (PWS), Togiak Alaska, the western Bering Sea (WBS), the Sea of Okhotsk (SO), Sakhalin, and Peter the Great Bay (PGB) were examined. The half-saturation coefficients of herring feeding were calibrated to climatological conditions at each of the eight locations to reproduce averaged size-at-age data. The depth of averaging used for water temperature and zooplankton, and the maximum consumption rate parameter, were made specific to each location. Using the calibrated half-saturation coefficients, the 1948-2002 period was then simulated using daily values of water temperature and zooplankton densities interpolated from monthly model output. To detect regime shifts in simulated temperatures, zooplankton and herring growth rates, we applied sequential t-test analyses on the 54 years of hindcast simulation values. The detected shifts of herring age-5 growth showed closest match (69%) to the regime shift years (1957/58, 1970/71, 1976/77, 1988/89, 1998/99). We explored relationships among locations using cluster and principal component analyses. The first principal component of water temperature showed good correspondence to the Pacific Decadal Oscillation and all zooplankton groups showed a pan-Pacific decrease after the 1976/77 regime shift. However, the first principal component of herring growth rate showed decreased growth at the SO, PWS, WCVI and California

  7. Late Cenozoic Magmatic and Tectonic Evolution of the Ancestral Cascade Arc in the Bodie Hills, California and Nevada: Insights from Integrated Geologic, Geophysical, Geochemical and Geochronologic Studies

    Science.gov (United States)

    John, D. A.; du Bray, E. A.; Box, S. E.; Blakely, R. J.; Fleck, R. J.; Vikre, P. G.; Cousens, B.; Moring, B. C.

    2012-12-01

    Geologic mapping integrated with new geophysical, geochemical, and geochronologic data characterize the evolution of Bodie Hills volcanic field (BHVF), a long-lived eruptive center in the southern part of the ancestral Cascade arc. The ~700 km2 field was a locus of magmatic activity from ~15 to 8 Ma. It includes >25 basaltic andesite to trachyandesite stratovolcanoes and silicic trachyandesite to rhyolite dome complexes. The southeastern part of the BHVF is overlain by the ~3.9 to 0.1 Ma, post-arc Aurora Volcanic Field. Long-lived BHVF magmatism was localized by crustal-scale tectonic features, including the Precambrian continental margin, the Walker Lane, the Basin and Range Province, and the Mina deflection. BHVF eruptive activity occurred primarily during 3 stages: 1) dominantly trachyandesite stratovolcanoes (~15.0 to 12.9 Ma), 2) coalesced trachydacite and rhyolite lava domes and trachyandesite stratovolcanoes (~11.6 to 9.7 Ma), and 3) dominantly silicic trachyandesite to dacite lava dome complexes (~9.2 to 8.0 Ma). Small rhyolite domes were emplaced at ~6 Ma. Relatively mafic stratovolcanoes surrounded by debris flow aprons lie on the margins of the BHVF, whereas more silicic dome fields occupy its center. Detailed gravity and aeromagnetic data suggest the presence of unexposed cogenetic granitic plutons beneath the center of the BHVF. Isotopic compositions of BHVF rocks are generally more radiogenic with decreasing age (e.g., initial Sr isotope values increase from ~0.7049 to 0.7061), which suggests progressively greater magma contamination by crustal components during evolution of the BHVF. Approximately circular, polygenetic volcanoes and scarcity of dikes suggest a low differential horizontal stress field during BHVF formation. Extensive alluvial gravel deposits that grade laterally into fluvial gravels and finer grained lacustrine sediments and the westerly sourced Eureka Valley Tuff (EVT; ~9.4 Ma) blanket large parts of the BHVF. The earliest sediments

  8. The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora).

    Science.gov (United States)

    Beklemisheva, Violetta R; Perelman, Polina L; Lemskaya, Natalya A; Kulemzina, Anastasia I; Proskuryakova, Anastasia A; Burkanov, Vladimir N; Graphodatsky, Alexander S

    2016-01-01

    Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae-monotypic family), near threatened Steller sea lion (Eumetopias jubatus, Otariidae) and the endemic Baikal seal (Pusa sibirica, Phocidae) using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32). Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years). Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae) as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular. PMID:26821159

  9. The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study.

    Directory of Open Access Journals (Sweden)

    Johannes R Hov

    Full Text Available Multiple immune-related genes are encoded in the HLA complex on chromosome 6p21. The 8.1 ancestral haplotype (AH8.1 include the classical HLA alleles HLA-B*08:01 and HLA-DRB1*03:01, and has been associated with a large number of autoimmune diseases, but the underlying mechanisms for this association are largely unknown. Given the recently established links between the gut microbiota and inflammatory diseases, we hypothesized that the AH8.1 influences the host gut microbial community composition. To study this further, healthy individuals were selected from the Norwegian Bone Marrow Donor Registry and categorized as either I. AH8.1 homozygote (n=34, II. AH8.1 heterozygote (n=38, III. Non AH8.1 heterozygote or IV. HLA-DRB1 homozygote but non AH8.1 (n=15. Bacterial DNA from stool samples were subjected to sequencing of the V3-V5 region of the 16S rRNA gene on the 454 Life Sciences platform and data analyzed using Mothur and QIIME. The results showed that the abundances of different taxa were highly variable within all pre-defined AH8.1 genotype groups. Using univariate non-parametric statistics, there were no differences regarding alpha or beta diversity between AH8.1 carriers (categories I and II and non-carriers (categories III and IV, however four different taxa (Prevotellaceae, Clostridium XVIII, Coprococcus, Enterorhabdus had nominally significant lower abundances in AH8.1 carriers than non-carriers. After including possible confounders in a multivariate linear regression, only the two latter genera remained significantly associated. In conclusion, the overall contribution of the AH8.1 haplotype to the variation in gut microbiota profile of stool in the present study was small.

  10. The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study.

    Science.gov (United States)

    Hov, Johannes R; Zhong, Huanzi; Qin, Bingcai; Anmarkrud, Jarl Andreas; Holm, Kristian; Franke, Andre; Lie, Benedicte A; Karlsen, Tom H

    2015-01-01

    Multiple immune-related genes are encoded in the HLA complex on chromosome 6p21. The 8.1 ancestral haplotype (AH8.1) include the classical HLA alleles HLA-B*08:01 and HLA-DRB1*03:01, and has been associated with a large number of autoimmune diseases, but the underlying mechanisms for this association are largely unknown. Given the recently established links between the gut microbiota and inflammatory diseases, we hypothesized that the AH8.1 influences the host gut microbial community composition. To study this further, healthy individuals were selected from the Norwegian Bone Marrow Donor Registry and categorized as either I. AH8.1 homozygote (n=34), II. AH8.1 heterozygote (n=38), III. Non AH8.1 heterozygote or IV. HLA-DRB1 homozygote but non AH8.1 (n=15). Bacterial DNA from stool samples were subjected to sequencing of the V3-V5 region of the 16S rRNA gene on the 454 Life Sciences platform and data analyzed using Mothur and QIIME. The results showed that the abundances of different taxa were highly variable within all pre-defined AH8.1 genotype groups. Using univariate non-parametric statistics, there were no differences regarding alpha or beta diversity between AH8.1 carriers (categories I and II) and non-carriers (categories III and IV), however four different taxa (Prevotellaceae, Clostridium XVIII, Coprococcus, Enterorhabdus) had nominally significant lower abundances in AH8.1 carriers than non-carriers. After including possible confounders in a multivariate linear regression, only the two latter genera remained significantly associated. In conclusion, the overall contribution of the AH8.1 haplotype to the variation in gut microbiota profile of stool in the present study was small. PMID:26207384

  11. Contrasting Effects of Central Pacific and Eastern Pacific El Nino on Stratospheric Water Vapor

    Science.gov (United States)

    Garfinkel, Chaim I.; Hurwitz, Margaret M.; Oman, Luke D.; Waugh, Darryn W.

    2013-01-01

    Targeted experiments with a comprehensive chemistry-climate model are used to demonstrate that seasonality and the location of the peak warming of sea surface temperatures dictate the response of stratospheric water vapor to El Nino. In spring, El Nino events in which sea surface temperature anomalies peak in the eastern Pacific lead to a warming at the tropopause above the warm pool region, and subsequently to more stratospheric water vapor (consistent with previous work). However, in fall and in early winter, and also during El Nino events in which the sea surface temperature anomaly is found mainly in the central Pacific, the response is qualitatively different: temperature changes in the warm pool region are nonuniform and less water vapor enters the stratosphere. The difference in water vapor in the lower stratosphere between the two variants of El Nino approaches 0.3 ppmv, while the difference between the winter and spring responses exceeds 0.5 ppmv.

  12. Restoring Ancestral Language, Restoring Identity.

    Science.gov (United States)

    Bannon, Kay T.

    1999-01-01

    Describes the Cherokee Language Renewal Program that was designed to help Cherokee elementary school children learn to function in the dominant culture without sacrificing their own cultural heritage. Explains how the program got started, and reports on how it helps restore a cultural identify to a people who are at risk of losing their identity.…

  13. Ancestral Genres of Mathematical Graphs

    Science.gov (United States)

    Gerofsky, Susan

    2011-01-01

    Drawing from sources in gesture studies, cognitive science, the anthropology of religion and art/architecture history, this article explores cultural, bodily and cosmological resonances carried (unintentionally) by mathematical graphs on Cartesian coordinates. Concepts of asymmetric bodily spaces, grids, orthogonality, mapping and sacred spaces…

  14. Curved canals: Ancestral files revisited

    Directory of Open Access Journals (Sweden)

    Jain Nidhi

    2008-01-01

    Full Text Available The aim of this article is to provide an insight into different techniques of cleaning and shaping of curved root canals with hand instruments. Although a plethora of root canal instruments like ProFile, ProTaper, LightSpeed ® etc dominate the current scenario, the inexpensive conventional root canal hand files such as K-files and flexible files can be used to get optimum results when handled meticulously. Special emphasis has been put on the modifications in biomechanical canal preparation in a variety of curved canal cases. This article compiles a series of clinical cases of root canals with curvatures in the middle and apical third and with S-shaped curvatures that were successfully completed by employing only conventional root canal hand instruments.

  15. Ancestral susceptibility to colorectal cancer

    Czech Academy of Sciences Publication Activity Database

    Huhn, S.; Pardini, Barbara; Naccarati, Alessio; Vodička, Pavel (ed.); Hemminki, K.; Försti, A.

    2012-01-01

    Roč. 27, č. 2 (2012), s. 197-204. ISSN 0267-8357 R&D Projects: GA ČR GA310/07/1430; GA ČR GAP304/10/1286 Grant ostatní: EU FP7(XE) HEALTH-F4-2007-200767 Institutional research plan: CEZ:AV0Z50390512 Keywords : cancer susceptibility * molecular epidemiology * genetic susceptibility Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.500, year: 2012

  16. 2006 Pacific Northwest Loads and Resources Study.

    Energy Technology Data Exchange (ETDEWEB)

    United States. Bonneville Power Administration.

    2006-03-01

    The Pacific Northwest Loads and Resources Study (White Book), which is published annually by the Bonneville Power Administration (BPA), establishes one of the planning bases for supplying electricity to customers. The White Book contains projections of regional and Federal system load and resource capabilities, along with relevant definitions and explanations. The White Book also contains information obtained from formalized resource planning reports and data submittals including those from individual utilities, the Northwest Power and Conservation Council (Council), and the Pacific Northwest Utilities Conference Committee (PNUCC). The White Book is not an operational planning guide, nor is it used for determining BPA revenues, although the database that generates the data for the White Book analysis contributes to the development of BPA's inventory and ratemaking processes. Operation of the Federal Columbia River Power System (FCRPS) is based on a set of criteria different from that used for resource planning decisions. Operational planning is dependent upon real-time or near-term knowledge of system conditions that include expectations of river flows and runoff, market opportunities, availability of reservoir storage, energy exchanges, and other factors affecting the dynamics of operating a power system. The load resource balance of both the Federal system and the region is determined by comparing resource availability to an expected level of total retail electricity consumption. Resources include projected energy capability plus contract purchases. Loads include a forecast of retail obligations plus contract obligations. Surplus energy is available when resources are greater than loads. This surplus energy could be marketed to increase revenues. Energy deficits occur when resources are less than loads. These energy deficits will be met by any combination of the following: better-than-critical water conditions, demand-side management and conservation

  17. Hazardous waste management in the Pacific basin

    Energy Technology Data Exchange (ETDEWEB)

    Cirillo, R.R.; Chiu, S.; Chun, K.C.; Conzelmann, G. [Argonne National Lab., IL (United States); Carpenter, R.A.; Indriyanto, S.H. [East-West Center, Honolulu, HI (United States)

    1994-11-01

    Hazardous waste control activities in Asia and the Pacific have been reviewed. The review includes China (mainland, Hong Kong, and Taiwan), Indonesia, Korea, Malaysia, Papua New Guinea, the Philippines, Singapore, and Thailand. It covers the sources of hazardous waste, the government structure for dealing with hazardous waste, and current hazardous waste control activities in each country. In addition, the hazardous waste program activities of US government agencies, US private-sector organizations, and international organizations are reviewed. The objective of these reviews is to provide a comprehensive picture of the current hazardous waste problems and the waste management approaches being used to address them so that new program activities can be designed more efficiently.

  18. Entertainment and Pacification System For Car Seat

    Science.gov (United States)

    Elrod, Susan Vinz (Inventor); Dabney, Richard W. (Inventor)

    2006-01-01

    An entertainment and pacification system for use with a child car seat has speakers mounted in the child car seat with a plurality of audio sources and an anti-noise audio system coupled to the child car seat. A controllable switching system provides for, at any given time, the selective activation of i) one of the audio sources such that the audio signal generated thereby is coupled to one or more of the speakers, and ii) the anti-noise audio system such that an ambient-noise-canceling audio signal generated thereby is coupled to one or more of the speakers. The controllable switching system can receive commands generated at one of first controls located at the child car seat and second controls located remotely with respect to the child car seat with commands generated by the second controls overriding commands generated by the first controls.

  19. Radioactive fallout in the South Pacific: a history Part 2: radioactivity measurements in the Pacific islands

    International Nuclear Information System (INIS)

    This report summarises results of the environmental radioactivity monitoring programme maintained in the Pacific islands by the National Radiation Laboratory (NRL) since 1961. Monitoring was commenced during the nuclear weapons tests at Christmas Island, then extended to a greater number of sites during the French atmospheric tests at Mururoa during 1966-1974 and maintained at that level until 1985 when the network was scaled down to its pres the monitoring of the French tests as the largest local source of short-lived fallout. These pacific monitoring operations during the period of 1960 to 1990 are reviewed which brings together and summarises the extensive compilation of data comprising 70 NRL report published during the period. An attempt is also made to correct the original data for decay between sampling and analysis. The average effective dose commitment for the South Pacific island population due to the entire history of atmospheric weapons tests is estimated to be 1.1 milli sievert.(author). 17 refs., 23 figs., tabs., ills

  20. North America and Asia Pacific LNG markets

    International Nuclear Information System (INIS)

    The liquefied natural gas (LNG) export opportunities in the Asia Pacific market were reviewed. Some of the differences that affect a North American LNG projects compared to more typical LNG projects were also outlined. The two main aspects of the LNG market in North America include the establishment of LNG import terminals on the east and southern coasts of the United States and the development of export oriented LNG projects. The Pac-Rim LNG project calls for initial delivery to South Korea of 4.0 MTPA by the end of 2000. A large LNG project has also been proposed for the year 2005 which would use Prudhoe Bay gas. Generally, in North America, there is little use for large scale LNG import projects because of the vast pipeline network that delivers gas reliably and at low cost anywhere in North America. However, LNG remains a good alternative for the Asia Pacific region because of the lack of a pipeline network. Also, Japan, Korea and Taiwan, the three main centers for LNG demand, have no domestic energy supplies and rely on imported energy sources. China is another major market opportunity for LNG. The Pac-Rim LNG project differs from others of its kind in that usually, an LNG project is based on the availability of large reservoirs of natural gas owned by state governments and involves production agreements with multi-national oil and gas companies. This scenario is simply not possible in Canada's deregulated environment. In contrast, the existence of upstream facilities, technical expertise, and low capital costs, hence reduced risks and time to develop an LNG project, gives Canada significant advantages. 3 tabs., 3 figs

  1. Climate change in the Pacific - is it real or not?

    Science.gov (United States)

    Kuleshov, Yuriy

    2013-04-01

    In this presentation, novel approaches and new ideas for students and young researchers to appreciate the importance of climate science are discussed. These approaches have been applied through conducting a number of training workshops in the Pacific Island Countries and teaching a course on climate change international law and climate change science at the University of the South Pacific (USP) - the first course on this type in the Pacific. Particular focus of this presentation is on broadening students' experience with application of web-based information tools for analysis of climatic extremes and natural hazards such as tropical cyclones. Over the past few years, significant efforts of Australian climate scientists have been dedicated to improving understanding of climate in the Pacific through the International Climate Change Adaptation Initiative (the Australian Government Initiative to assist with high priority climate adaptation needs in vulnerable countries in the Asia-Pacific region). The first comprehensive scientific report about the Pacific climate has been published in 2011, as an outcome of the Pacific Climate Change Science Program (PCCSP). A range of web-based information tools such as the Pacific Tropical Cyclone Data Portal, the Pacific Climate Change Data Portal and the Pacific Seasonal Climate Prediction Portal has been also developed through the PCCSP and the Pacific Adaptation Strategy Assistance Program. Currently, further advancement in seasonal climate prediction science and developing enhanced software tools for the Pacific is undertaken through the Theme 1 of the Pacific Australia Climate Change Science and Adaptation Planning (PACCSAP) Program. This new scientific knowledge needs to be transferred to students to provide them with true information about climate change and its impact on the Pacific Island Countries. Teachers and educators need their knowledge-base regularly updated and tools that will help their students critically

  2. Paleogeography of Cretaceous ammonoids of the Pacific coast of Russia

    Science.gov (United States)

    Jagt-Yazykova, E. A.; Zonova, T. D.

    2012-05-01

    This work presents the results of a study of the biogeographical distribution of Late Albian-Maastrichtian ammonites, found in sequences of the Pacific coast of Russia. The taxa typical of the Pacific Realm were identified, and their distribution traced beyond the borders of this region. In addition, species-migrants, distributed within the studied area were established. As a results of our works, a high level of endemism of ammonite fauna of the East of Russia was noted (75-88% of endemic species, on average). The bipolarity, previously established in the distribution of ammonoids within the Pacific Paleobiogeographical Realm, as well as their high regional provincialism, was confirmed. The following division of the studied area into faunal ammonite provinces in the Late Cretaceous was proposed: Arctic Province; Boreal-Pacific Province, including northeastern Russia (Chukotka Peninsula, the Koryak Upland, Penzhyna Gulf) and the boreal coast of North America (Alaska Peninsula, Arctic Canada and British Columbia); Northwest Pacific Province, including the Primorye Territory, Sakhalin and Shikotan Islands, the Japanese Islands; Northeast Province of the Pacific (the western coast of the United States and Mexico); Southwest Pacific (Australia, New Zealand, Oceania) and Southeast (the western coast of South America and Antarctica, Seymour and James Ross Islands) Provinces. This division is confirmed by data on inoceramid species. In addition, levels of global transgressions and general sea level rise, associated with the appearances of most of widespread marine taxa in the Pacific shelf seas, are established. These include Late Albian, Cenomanian-Turonian boundary, Late Coniacian, Late Campanian, Early-Late Maastrichtian boundary. Moreover, migration of ammonites occurred due to the Tethys Ocean extension and followed the northern sea straits in the Arctic Ocean and within the Pacific Realm, depending on warm currents. Both the counter and one-way migrations were

  3. Lagrangian mixed layer modeling of the western equatorial Pacific

    Science.gov (United States)

    Shinoda, Toshiaki; Lukas, Roger

    1995-01-01

    Processes that control the upper ocean thermohaline structure in the western equatorial Pacific are examined using a Lagrangian mixed layer model. The one-dimensional bulk mixed layer model of Garwood (1977) is integrated along the trajectories derived from a nonlinear 1 1/2 layer reduced gravity model forced with actual wind fields. The Global Precipitation Climatology Project (GPCP) data are used to estimate surface freshwater fluxes for the mixed layer model. The wind stress data which forced the 1 1/2 layer model are used for the mixed layer model. The model was run for the period 1987-1988. This simple model is able to simulate the isothermal layer below the mixed layer in the western Pacific warm pool and its variation. The subduction mechanism hypothesized by Lukas and Lindstrom (1991) is evident in the model results. During periods of strong South Equatorial Current, the warm and salty mixed layer waters in the central Pacific are subducted below the fresh shallow mixed layer in the western Pacific. However, this subduction mechanism is not evident when upwelling Rossby waves reach the western equatorial Pacific or when a prominent deepening of the mixed layer occurs in the western equatorial Pacific or when a prominent deepening of the mixed layer occurs in the western equatorial Pacific due to episodes of strong wind and light precipitation associated with the El Nino-Southern Oscillation. Comparison of the results between the Lagrangian mixed layer model and a locally forced Eulerian mixed layer model indicated that horizontal advection of salty waters from the central Pacific strongly affects the upper ocean salinity variation in the western Pacific, and that this advection is necessary to maintain the upper ocean thermohaline structure in this region.

  4. Out of the Blue: The Pacific Rim as a Region

    Directory of Open Access Journals (Sweden)

    Arturo Santa-Cruz

    2005-08-01

    Full Text Available In 1993, in advance of what was to be the first Asia Pacific Economic Cooperation (APEC leader’s summit, US president Bill Clinton gave a lecture at Waseda University in Japan. In his speech, Clinton called for the creation of a “community of the Pacific.” The idea of a Pacific community is neither Clinton’s nor the Democratic Party’s invention, however. In the previous decade Ronald Reagan had already used it, going even beyond later conceptualizations, by referring to the 21st century as the Pacific’s century. But Reagan's prophecy concerning the Great Ocean was not new back in the 1980s either. In 1900 then US Secretary of State John Hay wrote: “the Mediterranean is the ocean of the past, the Atlantic the ocean of the present and the Pacific is the ocean of the future.” In a more general manner, as Christopher Coker has observed, the notion of the “Century of the Pacific” is plausible because it is consistent with the idea, popularized by Hegel, that the spirit of civilization is moving toward that part of the globe. Thus, the century of the Pacific has become a kind of zeitgeist. In this paper I undertake a conceptual, historical, and theoretical journey through the “Pacific Rim” or “Asia-Pacific,” as it has been called more recently. Although I will question the utility of the term, I want to make clear that my purpose is only to undertake a critical survey of “the Pacific.” As in any trip, however, one needs a starting point. But, What is the starting point of the Pacific Rim, that geographic zone that has been compared to Pascal’s sphere: “with periphery indeterminable and a center that may be anywhere”?

  5. Out of the Blue: The Pacific Rim as a Region

    OpenAIRE

    Arturo Santa-Cruz

    2005-01-01

    In 1993, in advance of what was to be the first Asia Pacific Economic Cooperation (APEC) leader’s summit, US president Bill Clinton gave a lecture at Waseda University in Japan. In his speech, Clinton called for the creation of a “community of the Pacific.” The idea of a Pacific community is neither Clinton’s nor the Democratic Party’s invention, however. In the previous decade Ronald Reagan had already used it, going even beyond later conceptualizations, by referring to the 21st century as t...

  6. Sources and chemistry of nitrogen oxides over the tropical Pacific

    OpenAIRE

    Staudt, A. C.; Jacob, Daniel James; Ravetta, F; Logan, Jennifer A.; Bachiochi, D; Krishnamurti, T.; Sandholm, S; Ridley, B.; Singh, H; Talbot, B

    2003-01-01

    We examine the sources and chemistry affecting nitrogen oxides (NOx = NO + NO2) over the tropical Pacific (30°S–20°N) using observations from the Pacific Exploratory Mission to the Tropics B (PEM-Tropics B) aircraft mission conducted in March–April 1999. A global model of tropospheric chemistry driven by assimilated meteorological data is used to interpret the observations. Median concentrations observed over the South Pacific during PEM-Tropics B were 7 pptv NO, 16 pptv peroxyacetyl nitrate ...

  7. Regional cooperation on public acceptance in the pacific basin area

    International Nuclear Information System (INIS)

    This paper is an attempt to examine the nature of nuclear issues and the need for effective public acceptance programs in the Pacific Basin area, drawing attention to Japan, Canada and Taiwan of China. The paper first presents a general institutional framework in which regional cooperetion is being sought in the Pacific Basin area. Secondly, country-specific nuclear issues and public acceptance programs of Canada, Japan and Taiwan of China will be presented. And thirdly, the importance of international public acceptance programs will be discussed for nuclear-electric power to grow in the Pacific Basin area toward the Year 2000. (author)

  8. Revealing pelagic habitat use: the tagging of Pacific pelagics program

    OpenAIRE

    Block, Ba; Costa, DP; Boehlert, Gw; Kochevar, Re

    2002-01-01

    Tagging of Pacific pelagics (TOPP) is a pilot program of the Census of marine life (CoML) that will lead to understanding of pelagic habitat use by marine vertebrates and large squid in the North Pacific. Taking a multispecies approach, the TOPP project will use a range of electronic tag technologies to put the distribution and behavior of pelagic organisms, in the context of the oceanography of the North Pacific. Tag-bearing animals will be used as autonomous ocean profilers to enhance spars...

  9. Asian Pacific Journal of Tropical Biomedicine APJTB Bimonthly

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    <正>Aims & Scope Asian Pacific Journal of Tropical Biomedicine(APJTB)aims to set up and provide an international academic communication platform for physicians,medical scientists,allied health scientists and public health workers,especially those in the Asian Pacific region and worldwide on tropical biomedicine,infectious diseases and public health,and to meet the growing challenges of understanding,preventing and controUing the dramatic global emergence and reemergence of infectious diseases in the Asian Pacific region.

  10. Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes.

    Directory of Open Access Journals (Sweden)

    Andrew D Foote

    Full Text Available Killer whales (Orcinus orca are the most widely distributed marine mammals and have radiated to occupy a range of ecological niches. Disparate sympatric types are found in the North Atlantic, Antarctic and North Pacific oceans, however, little is known about the underlying mechanisms driving divergence. Previous phylogeographic analysis using complete mitogenomes yielded a bifurcating tree of clades corresponding to described ecotypes. However, there was low support at two nodes at which two Pacific and two Atlantic clades diverged. Here we apply further phylogenetic and coalescent analyses to partitioned mitochondrial genome sequences to better resolve the pattern of past radiations in this species. Our phylogenetic reconstructions indicate that in the North Pacific, sympatry between the maternal lineages that make up each ecotype arises from secondary contact. Both the phylogenetic reconstructions and a clinal decrease in diversity suggest a North Pacific to North Atlantic founding event, and the later return of killer whales to the North Pacific. Therefore, ecological divergence could have occurred during the allopatric phase through drift or selection and/or may have either commenced or have been consolidated upon secondary contact due to resource competition. The estimated timing of bidirectional migration between the North Pacific and North Atlantic coincided with the previous inter-glacial when the leakage of fauna from the Indo-Pacific into the Atlantic via the Agulhas current was particularly vigorous.

  11. Antarctica, supercontinents and the palaeogeography of the Cambrian 'explosion'

    Science.gov (United States)

    Dalziel, Ian

    2014-05-01

    Laurentia is bordered by latest Precambrian-Cambrian rifted margins and must therefore have been located within a Precambrian supercontinent. Geochronologic and geochemical evidence indicates that it was attached to parts of the East Antarctic craton within the Rodinian supercontinent in the late Mesoproterozoic. The Mawson craton of Antarctica rifted from the proto-Pacific margin of Laurentia during the Neooproterozoic, colliding with the present 'southern cone' of Laurentia at ~600 Ma along the Shackleton Range suture zone as Gondwana and Laurentia amalgamated to form the ephemeral Pannotia supercontinental assembly at the end of the Precambrian. The abrupt appearance of almost all animal phyla in the fossil record is often colloquially referred to as the Cambrian 'explosion' of life on Earth. It is also named 'Darwin's dilemma,' as he appreciated that this seemingly mysterious event posed a major problem for his theory of evolution by natural selection. It coincided with a time of major marine transgression over all the continents. Although the metazoan 'explosion' is now seen as more protracted than formerly recognized, it is still regarded one of the most critical events in the history of the biosphere. One of the most striking aspects of the earliest Cambrian fossils is geographic differentiation. In particular, the first benthic trilobite faunas on Laurentia, ancestral North America, and the newly amalgamated southern supercontinent of Gondwana are distinctly different. This has led to the suggestion of an unknown vicariant event intervening between an ancestral trilobite clade and higher members that are represented in the fossil record, possibly one related to the breakup of a supercontinent. Igneous rocks along the Panthalassic margin of Gondwana, including South America, southernmost Africa and the Ellsworth-Whitmore crustal block of Antarctica, and along the proto-Appalachian margin of Laurentia indicate that final separation of Laurentia from

  12. Surface constraints on the temporal and spatial evolution of the Farallon-Pacific-North America plate boundary

    Science.gov (United States)

    McQuarrie, N.; Oskin, M.

    2009-05-01

    Extension and volcanism are two surface derived data sets used to infer mantle processes back in time. We integrate two new large GIS-based datasets to create palinspastic restorations of extension and volcanism allowing us to readdress the relationship between plate-boundary deformation, intra-plate extension and magmatism in western North America. Using ArcGIS and custom software, we retrodeformed the NAVDat (North American Volcanic Database, navdat.geongrid.org) using the western North America reconstruction of McQuarrie and Wernicke (2005). We compare this data to strain rates calculated over a 50 km-grid forward- deformed from 36 Ma to present. With the deformed grid and palinspastically restored volcanic dataset we quantitatively compare rates of magmatism and deformation and evaluate the age, location, and migration of Cenozoic volcanic arcs. A first order conclusion from this study is that magmatism, throughout the Basin and Range, is primarily driven by plate boundary effects. The plate boundary effects include subduction and rollback of the Farallon plate, creation and expansion of slab windows as the Pacific plate intercepts the North American plate and re-establishment of the ancestral Cascade arc along the eastern margin of the Sierra Nevada at ˜ 15 Ma. Notable exceptions include the Yellowstone hotspot system along the northern boarder of our study area and late-stage (<8 Ma) passive, extension related asthenospheric upwelling that accompanied a thinning lithosphere along the eastern and western margins of the Basin and Range. The palinspastic reconstructions presented here highlight that the classic, high-angle, Basin and Range faulting that comprises most of the physiographic Basin and Range province commenced during a remarkably amagmatic period. These observations largely contradicts the active rifting model where magmatism triggers Basin and Range extension

  13. Dynamics of the Central American Pacific

    Science.gov (United States)

    Vieytez, Begonia; Marrero-Díaz, Ángeles; José Machín, Francisco; José Gavidia, Francisco; Castro, Mi

    2014-05-01

    The Central American Pacific (CAP) is the area located in front of the Central America coast, within the Eastern Tropical Pacific region (ETP). The CAP dynamic is strongly influenced by the NE and SE trade winds, also this area is characterized by the presence of coastal wind jets at Gulf of Papagayo and Gulf of Panama, which are product of wind pulses blowing through the mountain gaps of the central cordillera, generating important eddies as the cyclonic eddy of Costa Rica Dome (CRD). Nevertheless, the implications of the topography of the continental margin of Central America in the determination of the dynamic processes in the area related to the action of winds and currents are still unknown. Between November and December 2010 (dry season), onboard the R/V Miguel Oliver, oceanographic parameters were measured in the CAP area, which despite its importance, has been poorly investigated until date. Available oceanographic information was processed in order to describe the dynamic along the Pacific coast of Central America, which is notable for its particularly strong stratification in the water column and the distribution of properties, as response to the presence of areas with high temperatures (above 28° C) and other areas with salinity minimum (less than 24). In this study was possible to distinguish three hydrographic zones: PM, south, in the adjacent region to Gulf of Panama, PY, in the center, in the adjacent region to Gulf of Papagayo, and FC, to the north, in the adjacent region to Gulf of Fonseca. The surface transformations of the water bodies, from south to north, observed in these zones could be indicting the presence of Costa Rica current. The prevailing wind system is the main force of variations in the surface distribution of the temperature in the area, and they are responsible of important structures as the anticyclonic eddy in front Gulf of Fonseca, eddies derived from the wind pulses of Gulf of Papagayo, and the relatively low temperatures in

  14. Tropical cyclone statistics in the Northeastern Pacific

    Energy Technology Data Exchange (ETDEWEB)

    Romero-Vadillo, E. [Universidad Autonoma de Baja California Sur (UABCS), La Paz, Baja California Sur (Mexico); Zaytsev, O. [Centro Interdisciplinario de Ciencias Marinas, Instituto Politecnico Nacional, La Paz, Baja California Sur (Mexico)]. E-mail: ozaytsev@ipn.mx; Morales-Perez, R. [Instituto Mexicano de Tecnologia del Agua (IMTA), Jiutepec, Morelos (Mexico)

    2007-04-15

    The principal area of tropical cyclogenesis in the tropical eastern Pacific Ocean is offshore in the Gulf of Tehuantepec, between 8 and 15 degrees Celsius N, and most of these cyclones move towards the west and northwest during their initial phase. Historical analysis of tropical cyclone data in the Northeastern (NE) Pacific over the last 38 years (from 1966 to 2004) shows a mean of 16.3 tropical cyclones per year, consisting of 8.8 hurricanes 198 and 7.4 tropical storms. The analysis shows great geographical variability of cyclone tracks, and that there were a considerable number of hurricane strikes along the Mexican coast. About 50% of the tropical cyclones formed turned north to northeast. It was rare that any passed further north than 30 degrees Celsius N in latitude because of the cold California Current. Hurricane tracks that affected the NE Pacific may be separated into 5 groups. We compared the historical record of the sea surface temperature (SST), related with the El Nino events with a data set of tropical cyclones, including frequency, intensity, trajectory, and duration. Although the statistical dependence between the frequencies of tropical cyclones of the most abundant categories, 1 and 2, over this region and SST data was not convincing, the percentage of high intensity hurricanes and hurricanes with a long life-time (greater than 12 days) was more during El Nino years than in non-El Nino years. [Spanish] La principal region de la formacion de ciclones en el oceano Pacifico Este es el Golfo de Tehuantepec, entre los 8 y los 15 grados Celsius N. En su fase inicial los ciclones se mueven hacia el oeste y el noroeste. El analisis historico de los ciclones que se han generado durante los ultimos 38 anos (de 1966 a 2004) muestra un promedio de 16.2 ciclones por ano, consistentes en 8.8 huracanes y 7.4 tormentas tropicales. El analisis muestra una gran variabilidad geografica en la trayectoria de los ciclones, de los cuales un gran numero impacta las

  15. 76 FR 2083 - Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2011-01-12

    ..., work with the Stock Assessment Team to make necessary revisions, and produce a Joint Canada-U.S. Review...'s role will be development of recommendations and reports for consideration by the Pacific...

  16. 75 FR 20344 - North Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2010-04-19

    ... Management Council's Gulf of Alaska (GOA) and Bering Sea/Aleutian Islands (BSAI) groundfish plan teams will... models to be considered for inclusion in the GOA and BSAI Pacific cod assessments. DATES:...

  17. 75 FR 20566 - North Pacific Fishery Management Council; Public Meeting

    Science.gov (United States)

    2010-04-20

    ... Management Council's Gulf of Alaska (GOA) and Bering Sea/Aleutian Islands (BSAI) groundfish plan teams will... models to be considered for inclusion in the GOA and BSAI Pacific cod assessments. DATES:...

  18. Yellowstone Cutthroat Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for YELLOWSTONE CUTTHROAT TROUT contained in the StreamNet database. This feature class was created based...

  19. Rainbow Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for RAINBOW TROUT contained in the StreamNet database. This feature class was created based on linear...

  20. Redband Trout Distribution, Pacific Northwest (updated March, 2006)

    Data.gov (United States)

    Pacific States Marine Fisheries Commission — This dataset is a record of fish distribution and activity for REDBAND TROUT contained in the StreamNet database. This feature class was created based on linear...