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  1. Volcanic hazard maps of the Nevado del Ruiz volcano, Colombia

    Science.gov (United States)

    Parra, Eduardo; Cepeda, Hector

    1990-07-01

    Although the potential hazards associated with an eruption of Nevado del Ruiz volcano were known to civil authorities before the catastrophic eruption there in November 1985, their low perception of risk and the long quiescent period since the last eruption (140 years), caused them to wait for stronger activity before developing an eruption alert system. Unfortunately, the eruption occurred suddenly after a period of relative quiet, and as a result more than 25,000 people were killed. Although it was accurate and reasonably comprehensive, the hazard map that existed before the eruption was poorly understood by the authorities and even less so by the general population, because the scientific terminology and probabilistic approach to natural hazards were unfamiliar to many of them. This confusion was shared by the communication media, which at critical times placed undue emphasis on the possibility of lava flows rather than on the more imminent threat from mudflows, in keeping with the popular but often inaccurate perception of volcanic eruptions. This work presents an updated hazard map of Nevado del Ruiz that combines information on various hazardous phenomena with their relative probability of occurrence in order to depict numerical "hazard levels" that are easily comprehensible to nonspecialists and therefore less susceptible to misinterpretation. The scale of relative risk is arbitrary, ranging from five to one, and is intended to provide an intuitive indication of danger to people, property and crops. The map is meant to facilitate emergency preparedness and management by political and civil authorities, to educate the public concerning volcanic hazards and to assist in land-use planning decisions.

  2. Elementos geomorfológico-cuantitativos del piedemonte nororiental del volcán Nevado de Toluca

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    Luis Miguel Espinosa Rodríguez

    2003-01-01

    Full Text Available A partir de un análisis cuantitativo y morfométrico, se determina la geodinámica del piedemonte nororiental del volcán Nevado de Toluca. Se destaca la relación entre el material, las formas heredadas y la energía que dinamiza el noreste del volcán.

  3. The 1985 Nevado del Ruiz volcano catastrophe: anatomy and retrospection

    Science.gov (United States)

    Voight, Barry

    1990-12-01

    This paper seeks to analyze in an objective way the circumstances and events that contributed to the 1985 Nevado del Ruiz catastrophe, in order to provide useful guidelines for future emergencies. The paper is organized into two principal parts. In the first part, an Anatomy of the catastrophe is developed as a step-by-step chronicle of events and actions taken by individuals and organizations during the period November 1984 through November 1985. This chronicle provides the essential background for the crucial events of November 13. This year-long period is broken down further to emphasize important chapters: the gradual awareness of the awakening of the volcano; a long period of institutional skepticism reflecting an absence of credibility; the closure of the credibility gap with the September 11 phreatic eruption, followed by an intensive effort to gird for the worst; and a detailed account of the day of reckoning. The second part of the paper, Retrospection, examines the numerous complicated factors that influenced the catastrophic outcome, and attempts to cull a few "lessons from Armero" in order to avoid similar occurrences in the future. In a nutshell, the government on the whole acted responsibly but was not willing to bear the economic or political costs of early evacuation or a false alarm. Science accurately foresaw the hazards but was insufficiently precise to render reliable warning of the crucial event at the last possible minute. Catastrophe was therefore a calculated risk, and this combination - the limitations of prediction/detection, the refusal to bear a false alarm and the lack of will to act on the uncertain information available - provided its immediate and most obvious causes. But because the crucial event occurred just two days before the Armero emergency management plan was to be critically examined and improved, the numerous circumstances which delayed progress of emergency management over the previous year also may be said to have

  4. SIMPOSIO "ASPECTOS MÉDICOS DE LA ERUPCIÓN DEL NEVADO DEL RUIZ". CONCLUSIONES PRELIMINARES

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    Academia Nacional de Medicina

    1986-12-01

    Full Text Available

    El Comité Organizador del Simposio "' Aspéctos Medicos de la Erupción Volcanica del Nevado del Ruiz". confor­mado por los doctores Pablo Gomez Martinez, Jose Felix Patino, Valentin Malagón, German Fernandez. Ivan Munera y Luis Jorge Perez, se permite informar a la opinion publica, las conclusiones preliminares a las que ha llegado despues de haber analizado todas las ponencias presentadas por las personas y entidades que atendieron sobrevivientes de la catastrofe de noviembre de 1985.

    1. Aspectos geológicos

    Colombia está situada en el area denominada Cinturón de Fuego, que envuelve el Oceano Pacifico y en su conformación geográfica se encuentran 30 volcanes, situados en su mayorla en la Cordillera Central. De estos, 11 están en mayor o menor actividad y 7 tienen historia de erupciones. Las capas geol6ógicas sobre las cuales se extiende el pals presentan zonas de elevada sismicidad

    Las caracterlsticas de la erupción del Nevado del Ruiz permiten clasificarlo como un volcan de tipo "'Pliniano- explosivo". que puede emitir enorme cantidad de gases y fragmentos sólidos a grandes velocidades y altas tempe­raturas, como tambien lodo caliente, con deshielo de las nieves perpetuas cuyo resultado es Ia formación del "lahar" que sepultó las poblaciones y cubrió extensas zonas de terreno. Estas erupciones se presentan de manera intermitente y su comportamiento es impredecible. Existe siempre la posibilidad de erupciones late­rales que aumentan su peligro y radio de acción.

    El "lahar" fue una avalancha de lodo que cubrió a la poblacion de Armero; lo componían materiales inorgánicos provenientes del volcan, mezclados con los materiales orgánicos presentes en las tierras fertiles dedicadas a la agricultura y la ganadería. Estudios microbiológicos demostraron la presencia de una rica flora bacteriana y de hongos...

  5. DISSIMILARITY-BASED CLASSIFICATION OF SEISMIC SIGNALS AT NEVADO DEL RUIZ VOLCANO

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    G. Castellanos César

    2006-12-01

    Full Text Available Automatic classification of seismic signals has been typically carried out on feature-based representations. Recent research works have shown that constructing classifiers on dissimilarity representations is a more practical and, sometimes, a more accurate solution for some pattern
    recognition problems. In this paper, we consider Bayesian classifiers constructed on dissimilarity representations. We show that such classifiers are a feasible and reliable alternative for automatic
    classification of seismic signals. Our experiments were conducted on a dataset containing seismic signals recorded by two selected stations of the monitoring network at Nevado del Ruiz Volcano.
    Dissimilarity representations were constructed by calculating pairwise Euclidean distances and a non-Euclidean measure on the normalized spectra, which is based on the difference in area between spectral curves. Results show that even though Euclidean dissimilarities have advantageous properties, non-Euclidean measures can be beneficial for matching spectra of seismic signals.

  6. Breathing of magma reservoir beneath Nevado del Ruiz Volcano in Colombia inferred from repeated seismic tomography

    Science.gov (United States)

    Koulakov, Ivan; Vargas, Carlos A.; Gladkov, Valery; Lopez, Cristian M.; Gomez, Eliana; El Khrepy, Sami; Al-Arifi, Nassir

    2017-04-01

    The Nevado del Ruiz volcano in Colombia is one of the most hazardous volcanoes in the world, causing the death of 25,000 people in 1985. Using a new algorithm for repeated tomography, we detected a clear seismic anomaly beneath the volcano that changes amplitude and shape during the present unrest period, which started in 2010. We propose that this anomaly of high Vp/Vs ratio is associated with a significant amount of liquid fluid that was accumulated beneath the volcano prior to the eruption. In 2010, degassing of these fluids triggered the beginning of the volcanic unrest that continues until now. In 2011-2014, most of the fluids escaped through the crater that led to the emptying of the reservoir. In 2015-2016, a new inflation of the reservoir was accompanied by increase of volcanic activity. It is possible that recurrent "breathing" of the volcano reservoir is the main cause of the NRV eruptions.

  7. Impacts of acid emissions from Nevado del Ruiz volcano, Colombia, on selected terrestrial and aquatic ecosystems

    Science.gov (United States)

    Parnell, Roderic A.; Burke, Kelly J.

    1990-07-01

    Emissions of acidic gases and thermal waters from Nevado del Ruiz volcano have recently increased in concert with the November 13, 1985 eruption. This study examines the downwind and downstream effects of these emissions on alpine ecosystems high on the slopes of the volcano (4100 m) and on coffee plantations at lower elevations ( 30 km). Samples of bulk deposition, rain, soils, soil solutions, and streams were collected over a six-month period (January-July, 1987) to examine the impacts of this volcanogenic acidity. Bulk deposition falling on the higher slopes of the volcano is usually acidified; however, deposition reaching the distal coffee plantations seldom is acidic. The sources of the acids are hydrogen chloride and sulfur dioxide in the plume of the volcano. Although sulfur dioxide is by far the more abundant gas, hydrogen chloride is most responsible for acidification of rain falling on the slopes of the volcano. With distance from the vent, the chloride/sulfate ratio drops exponentially. The only major influence on regional precipitation chemistry in addition to the volcano appears to be land-use-related activities around the coffee plantations. Deposition on these areas is enriched by an order of magnitude in nitrate and base cations, compared to all other stations. Throughfall chemistry in the coffee plantations shows a dramatic response to occasional acid-rain events. A base-leaching process on coffee plant leaves is triggered by acid rain. For each equivalent of hydrogen ion in rain on the leaf surface, over 23 equivalents of potassium ion are leached from the leaf. In spite of this dramatic response by the vegetation, the plantation soils appear relatively unaffected by acidic deposition. In contrast, the alpine soils on the volcano exhibit low pHs, high sulfate and chloride concentrations in soil solutions, and high extractable sulfate concentrations. All of these factors indicate that these soils have undergone significant acid loading. While the

  8. Magmatic and Volcanic Processes Interpreted from Recent Ash Emissions from Nevado del Ruiz, Colombia

    Science.gov (United States)

    Wall, K. T.; Harpel, C. J.; Martinez, L. M.; Ceballos, J. A.; Cortés, G. P.

    2017-12-01

    Nevado del Ruiz is a composite volcano located in the Colombian Central Cordillera. It is the modern edifice of the Nevado del Ruiz Volcanic Complex that has been active since 1.8 Ma. Through historic times, Ruiz has exhibited decades-long eruptive stages that include minor explosions and fumarolic activity bracketing one major magmatic event. Modern eruptive activity began with seismic unrest in 1984, a small explosive eruption on September 11, 1985, and the catastrophic lahar-generating eruption of November 13, 1985. Since then, Ruiz has periodically erupted plumes up to a few kilometers above the crater, including a phreatomagmatic eruption on September 1, 1989, eruptions on May 29 (1 km plume) and June 30 (8 km plume) 2012, and frequent minor ash emissions from 2015 through the present. We have examined a suite of samples from the 1985, 1989, 2012, and 2015 eruptions to assess the origin of erupted materials (juvenile vs. non-juvenile) and nature of eruptive and subvolcanic processes (e.g. fresh intrusion, phreatic explosion). The November 1985 ash is dominated by beige to light gray pumice and free crystals, while samples from September 1985 and the 1989 through 2015 eruptions contain other fresh looking angular to subangular particles, including dense glassy to microcrystalline chips and vesicular glass shards. If juvenile, as we suspect, these components indicate phreatomagmatic to magmatic eruptive processes. Vesicular glass ranges from colorless to brown, often within the same sample, suggesting that bimodal magmatic sources, as recorded by mingled pumices of November 1985, have continued to play a role in eruptions at Ruiz. In particular, ash from 1989 contains vesicular glass that is 65% colorless to beige and 35% brown. Sparse, very dark brown vesicular glass appears in ash from June 2012—a larger eruption than that of May 2012—and is also observed in some 2015 samples, suggesting a more prominent mafic component. In addition to our observations

  9. Breathing of the Nevado del Ruiz volcano reservoir, Colombia, inferred from repeated seismic tomography.

    Science.gov (United States)

    Vargas, Carlos A; Koulakov, Ivan; Jaupart, Claude; Gladkov, Valery; Gomez, Eliana; El Khrepy, Sami; Al-Arifi, Nassir

    2017-04-10

    Nevado del Ruiz volcano (NRV), Columbia, is one of the most dangerous volcanoes in the world and caused the death of 25,000 people in 1985. Using a new algorithm for repeated tomography, we have found a prominent seismic anomaly with high values of the Vp/Vs ratio at depths of 2-5 km below the surface, which is associated with a shallow magma reservoir. The amplitude and shape of this anomaly changed during the current phase of unrest which began in 2010. We interpret these changes as due to the ascent of gas bubbles through magma and to degassing of the reservoir. In 2011-2014, most of this gas escaped through permeable roof rocks, feeding surface fumarole activity and leading to a gradual decrease of the Vp/Vs ratio in the reservoir. This trend was reversed in 2015-2016 due to replenishment of the reservoir by a new batch of volatile-rich magma likely to sustain further volcanic activity. It is argued that the recurring "breathing" of the shallow reservoir is the main cause of current eruptions at NRV.

  10. Breathing of the Nevado del Ruiz volcano reservoir, Colombia, inferred from repeated seismic tomography

    Science.gov (United States)

    Vargas, Carlos. A.; Koulakov, Ivan; Jaupart, Claude; Gladkov, Valery; Gomez, Eliana; El Khrepy, Sami; Al-Arifi, Nassir

    2017-04-01

    Nevado del Ruiz volcano (NRV), Columbia, is one of the most dangerous volcanoes in the world and caused the death of 25,000 people in 1985. Using a new algorithm for repeated tomography, we have found a prominent seismic anomaly with high values of the Vp/Vs ratio at depths of 2-5 km below the surface, which is associated with a shallow magma reservoir. The amplitude and shape of this anomaly changed during the current phase of unrest which began in 2010. We interpret these changes as due to the ascent of gas bubbles through magma and to degassing of the reservoir. In 2011-2014, most of this gas escaped through permeable roof rocks, feeding surface fumarole activity and leading to a gradual decrease of the Vp/Vs ratio in the reservoir. This trend was reversed in 2015-2016 due to replenishment of the reservoir by a new batch of volatile-rich magma likely to sustain further volcanic activity. It is argued that the recurring “breathing” of the shallow reservoir is the main cause of current eruptions at NRV.

  11. Deformation monitoring at Nevado del Ruiz, Colombia - October 1985 - March 1988

    Science.gov (United States)

    Banks, N.G.; Carvajal, C.; Mora, H.; Tryggvason, E.

    1990-01-01

    Deformation studies began at Nevado del Ruiz 23 days before the devastating 13 November 1985 eruption, at least 12 months after precursory seismicity and fumarolic activity began. The late start in geodetic monitoring, limited number of stations in the pre-eruption network, and inconsistent patterns in the observed deformation limit conclusions about intrusive activity in the months and weeks prior to the eruption. However, the data require that the magma source of the devastating eruption was either deeper than 7 km or, if shallow, recovered the same volume and position within one week of the eruption. Geodetic monitoring resumed 1 week after the eruption and, by April 1986, included 11 tilt-leveling stations, 38 EDM lines, and 7 short leveling lines - a network capable of detecting emplacement or movement of magma volumes as small as 3 MCM (3 ?? 106 m3) to a depth of 2-3 km (using a point-source model), 10 MCM to 7 km, 50 MCM to 10 km, and 200 MCM to 15 km beneath Ruiz. In addition, 4 telemetered tiltmeters provided the capability of detecting, in real time, the fairly rapid ascent of much smaller magma bodies. Stations established to detect instability of the summit ice cap after the eruption were discontinued in early 1986. The data collected from the geodetic networks have higher than normal variance but demonstrate that little or no cumulative deformation of Ruiz occurred from October 1985 through March 1988. Thus, little, if any, magma intruded above 5 km beneath the summit during or after the 13 November 1985 eruption. This lack of significant intrusive activity agrees with the surprisingly low seismic energy release under Ruiz and makes direct degassing of a large batholith an improbable explanation of the large sulfur flux to date at Ruiz. Part of the variance in the geodetic data results from real but noncumulative deformation that may in part be pressure-buffered by a fairly large geothermal water-gas mixture for which abundant physical evidence exists

  12. Pago por servicios ambientales hidrológicos: caso de estudio Parque Nacional del Nevado de Toluca, México

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    Edgar Brunett

    2010-01-01

    Full Text Available El potencial hídrico que representa el Parque Nacional Nevado de Toluca se ha visto disminuido por numerosos impactos antrópicos, lo que exige crear estrategias para su conservación. Este estudio tiene como objetivo estimar la disposición a pagar haciendo una encuesta en una muestra de usuarios del Valle de Toluca en el marco de un programa de Pago por Servicios Ambientales Hidrológicos. Los resultados muestran que los usuarios dispuestos a pagar rebasan el 50%, con cantidades que oscilan entre 30 y 80 pesos mensuales, sin embargo hay un sector de los encuestados que no estarían dispuestos a contribuir, pero realizarían acciones enfocadas al cuidado del medio ambiente.

  13. Pago por servicios ambientales hidrológicos: caso de estudio Parque Nacional del Nevado de Toluca, México

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    Edgar Brunett

    2011-01-01

    Full Text Available El potencial hídrico que representa el Parque Nacional Nevado de Toluca se ha visto disminuido por numerosos impactos antrópicos, lo que exige crear estrategias para su conservación. Este estudio tiene como objetivo estimar la disposición a pagar haciendo una encuesta en una muestra de usuarios del Valle de Toluca en el marco de un programa de Pago por Servicios Ambientales Hidrológicos. Los resultados muestran que los usuarios dispuestos a pagar rebasan el 50%, con cantidades que oscilan entre 30 y 80 pesos mensuales, sin embargo hay un sector de los encuestados que no estarían dispuestos a contribuir, pero realizarían acciones enfocadas al cuidado del medio ambiente.

  14. Records of new or poorly known migratory birds from Laguna del Otun, Los Nevados National Natural Park, Risaralda, Colombia

    International Nuclear Information System (INIS)

    Acevedo Charry, Orlando; Matta Camacho, Nubia E; Moncada Alvarez, Ligia Ines

    2013-01-01

    Colombia is important for migratory birds. Despite this, we do not know where they are during their crossing or residency in the country, and which species use paramo. We registered new migratory bird species for Laguna Del Otun, immersed in a complex of wetlands declared a Ramsar site since 2008. The lagoon is located in the Los Nevados National Natural Park at 3932 m asl, in paramo ecosystems of the Central Andes of Colombia. During five field trips between 2010-2012 we recorded four new migratory bird species for the park: Anas acuta, Pandion haliaetus, Riparia riparia, and Dendroica petechia. We also registered an altitudinal range extension for two additional migratory species which had only been recorded below 3500 m: Tringa flavipes and Hirundo rustica. These findings suggest these species could tolerate high mountain conditions and use the paramo. It's needed inquiry about migratory dynamics and high mountain habitat use by migratory birds.

  15. Riqueza específica de vertebrados en un bosque reforestado del Parque Nacional Nevado de Toluca, México Species richness of vertebrates in a reforested woodland of the Nevado de Toluca National Park, Mexico

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    Jessica Mariana Sánchez-Jasso

    2013-03-01

    Full Text Available Este trabajo documenta la riqueza específica de vertebrados de un bosque reforestado del Parque Nacional Nevado de Toluca (PNNT Estado de México, México. Se identificaron 85 especies totales, de las cuales 24 especies son endémicas de México, 14 especies se encuentran en alguna categoría de riesgo de acuerdo con la NOM-059 (SEMARNAT, 2010 y 3 especies en la lista roja de la UICN. Aun cuando la zona de estudio representa apenas el 0.42% de la superficie total del PNNT, la riqueza de vertebrados encontrada constituye el 11.37% de la riqueza total en el Estado de México, lo cual destaca la importancia de este espacio y una urgente necesidad de establecer estrategias de manejo que garanticen la conservación de las especies y su hábitat.This paper documents the richness of vertebrates in reforested woodlands inside the Nevado de Toluca National Park, State of Mexico, Mexico. A total of 85 species were identified, of which 24 species are endemic to Mexico, 14 species are in some risk category according to NOM-059-SEMARNAT-2010 and 3 species in the IUCN Red List. Even though the study area accounts for 0.42% of the total area of the Nevado de Toluca National Park, the richness of vertebrates in this area includes 11.37% of the total richness in the State of Mexico, highlighting the importance of the area and an urgent need to establish management strategies for its conservation.

  16. Eruption of the nevado del ruiz volcano, Colombia, on 13 november 1985: gas flux and fluid geochemistry.

    Science.gov (United States)

    Williams, S N; Lowe, D R; Stoiber, R E; Gemmell, J B; Connor, C B; P, N G; C, A L

    1986-08-29

    The 13 November 1985 eruption of Nevado del Ruiz volcano, in Colombia, released a small volume of pyroclastic material and a disproportionately large volume of volcanic gas. Before the eruption, summit fumarole gases became less water-rich, and the sulfur/chlorine ratio increased. Remote measurements of sulfur dioxide flux after the eruption indicated active degassing at levels associated with eruptive or inter-eruptive stages of other volcanoes. Thermal water analyses revealed increases in magnesium, calcium, and potassium and an increase in the magnesium/chlorine ratio, suggesting that these elements may have been leached from new magma. Ash leachate data showed sulfate and chloride concentrations and ratios that would be expected for the late stages ofa major Plinian eruption. Water from the lahar contained high concentrations of sulfate and had a sulfur/chlorine ratio of 4.67, suggesting that water ejected from the crater lake and turbulent mixing of pyroclasts and glacial ice triggered the lahar. Microprobe analyses of pumice from this eruption and the most recent previous event showed similar mixed andesites. The uniform composition of the pumices and the unusually high ratio of gas to magma suggest that, although a new batch of magma triggered this eruption, the pumice that erupted may actually be old. Large volumes of new magma and glacial ice make the volcano dangerous and should stimulate development of an integrated long-term monitoring program to include Tolima volcano, 25 kilometers to the south.

  17. Deterioro y conservación de los bosques del Nevado de Toluca y el rol de los actores locales

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    Ángel Rolando Endara Agramont

    2016-01-01

    Full Text Available El Área de Protección de Flora y Fauna Nevado de Toluca presenta una constante fragmentación de sus bosques. El objetivo de la investigación fue identificar los procesos de deterioro de sus bosques y el rol de los actores locales en su conservación. Se utilizaron los sistemas de información geográfica como base para la generación de mapas temáticos, además de la aplicación de un diagrama de flujo que define los problemas del bosque y otro que los describe y analiza para la búsqueda de soluciones. Los resultados muestran que los principales factores que inciden en el deterioro son incendios forestales, tala inmoderada, plagas y enfermedades. Finalmente se plantean estrategias y escenarios de manejo de los bosques a partir de la articulación de los actores locales.

  18. Caracterización de comunidades microbianas asociadas a prácticas agrícolas y usos del suelo de la vereda El Bosque - Parque Nacional Natural de los Nevados

    OpenAIRE

    Avellaneda Torres, Lizeth Manuela

    2014-01-01

    La presente investigación evaluó los cambios de las comunidades microbianas asociados al cultivo de papa y la ganadería en suelos de páramo de la vereda El Bosque del Parque Nacional Natural de Los Nevados (PNN Los Nevados). La evaluacion se realizó bajo un enfoque agroecologico en donde no solo se realizó la caracterización de los microorganismos del suelo sino tambien se llevaron a cabo estudios sobre los conflictos entre las comunidades del páramo y las autoridades ambientales, asì como la...

  19. ACTIVITY AND Vp/Vs RATIO OF VOLCANO-TECTONIC SEISMIC SWARM ZONES AT NEVADO DEL RUIZ VOLCANO, COLOMBIA

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    Londoño B. John Makario

    2010-06-01

    Full Text Available An analysis of the seismic activity for volcano-tectonic earthquake (VT swarms zones at Nevado del Ruiz Volcano (NRV was carried out for the interval 1985- 2002, which is the most seismic active period at NRV until now (2010. The swarm-like seismicity of NRV was frequently concentrated in very well defined clusters around the volcano. The seismic swarm zone located at the active crater was the most active during the entire time. The seismic swarm zone located to the west of the volcano suggested some relationship with the volcanic crises. It was active before and after the two eruptions occurred in November 1985 and September 1989. It is believed that this seismic activity may be used as a monitoring tool of volcanic activity. For each seismic swarm zone the Vp/Vs ratio was also calculated by grouping of earthquakes and stations. It was found that each seismic swarm zone had a distinct Vp/Vs ratio with respect to the others, except for the crater and west swarm zones, which had the same value. The average Vp/Vs ratios for the seismic swarm zones located at the active crater and to the west of the volcano are about 6-7% lower than that for the north swarm zone, and about 3% lower than that for the south swarm zone. We suggest that the reduction of the Vp/Vs ratio is due to degassing phenomena inside the central and western earthquake swarm zones, or due to the presence of microcracks inside the volcano. This supposition is in agreement with other studies of geophysics, geochemistry and drilling surveys carried out at NRV.

  20. Cambios en las propiedades del suelo, posteriores a un incendio en el Parque Nacional Natural de Los Nevados, Colombia

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    Juan Carlos Camargo-García

    2012-04-01

    Full Text Available En 2006 ocurrió un incendio en el Parque Nacional Natural de Los Nevados, Colombia, que afectó aproximadamente 2400 ha de ecosistema de páramo de sectores aledaños a la laguna del Otún (4 ° 46' 58.4" N y 75° 24' 26.8" O. Teniendo en cuenta la posible afectación de algunos servicios ecosistémicos proveídos por el suelo y la necesidad de encontrar variables que puedan ser utilizadas como indicadores del estado de este recurso, se realizó una evaluación de las propiedades físicas y químicas de los suelos en áreas afectadas (AA y no afectadas (NA por el incendio. Las evaluaciones se tuvieron inmediatamente después del evento (2006, dos años (2008 y tres años (2009 después. Se incluyeron áreas donde se implementaron estrategias de restauración y dos posiciones en el relieve: valle (turberas y laderas. Para identificar diferencias en las características del suelo evaluadas entre sitios afectados y no-afectados, posiciones topográficas y los tratamientos de restauración, se hizo una prueba no-paramétrica de Kruskall-Wallis. Posteriormente, para verificar relaciones entre variables, se realizó un análisis de correlación usando el coeficiente de Sperman. En general, la posición de valle mostró los cambios más drásticos en el suelo a través del tiempo de evaluación. Allí, más del 50% de la materia orgánica se perdió, generando cambios también en algunas propiedades físicas como la densidad aparente y la estabilidad estructural, que después de tres años, y a pesar de las actividades de restauración, muestran evidentes problemas de degradación. Con los resultados obtenidos ha sido posible definir variables indicadoras de las condiciones del suelo, que podrían ser usadas en programas de monitoreo de este recurso. Así mismo, se evidencia que los procesos de restauración en este ecosistema son lentos y se requiere un tiempo prolongado para generar cambios positivos en las propiedades de los suelos afectados, que

  1. Cambios en las propiedades del suelo, posteriores a un incendio en el Parque Nacional Natural de Los Nevados, Colombia

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    Camargo García Juan Carlos

    2012-11-01

    Full Text Available

    En 2006 ocurrió un incendio en el Parque Nacional Natural de Los Nevados, Colombia, que afectó aproximadamente 2400 ha de ecosistema de páramo de sectores aledaños a la laguna del Otún (4 º

    46' 58.4'' N y 75º 24' 26.8'' O. Teniendo en cuenta la posible afectación de algunos servicios ecosis- témicos proveídos por el suelo y la necesidad de encontrar variables que puedan ser utilizadas como indicadores del estado de este recurso, se realizó una evaluación de las propiedades físicas y químicas de los suelos en áreas afectadas (AA y no afectadas (NA por el incendio. Las evaluaciones se tuvieron inmediatamente después del evento (2006, dos años (2008 y tres años (2009 después. Se incluyeron áreas donde se implementaron estrategias de restauración y dos posiciones en el relieve: valle (turbe- ras y laderas. Para identificar diferencias en las caracterIsticas del suelo evaluadas entre sitios afec- tados y no-afectados, posiciones topogrãficas y los tratamientos de restauración, se hizo una prueba no-paramétrica de Kruskall-%allis. Posteriormente, para verificar relaciones entre variables, se realizó un anãlisis de correlación usando el coeficiente de Sperman. En general, la posición de valle mostró los cambios más drásticos en el suelo a través del tiempo de evaluación. Allí, más del 50% de la mate- ria orgánica se perdió, generando cambios también en algunas propiedades físicas como la densidad aparente y la estabilidad estructural, que después de tres años, y a pesar de las actividades de restau- ración, muestran evidentes problemas de degradación. Con los resultados obtenidos ha sido posible definir variables indicadoras de las condiciones del suelo, /ue podrIan ser usadas en programas de monitoreo de este recurso. Así mismo, se evidencia que los procesos de restauración en este ecosiste- ma son lentos y se requiere un tiempo prolongado para generar cambios positivos en las

  2. El visitante del Parque Nacional Nevado de Toluca, México. Análisis del comportamiento en un área natural protegida

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    Maribel Osorio García

    2012-02-01

    Full Text Available El artículo expone los resultados de una investigación realizada sobre los visitantes que llegan al Parque Nacional Nevado de Toluca (PNNT ubicado en la región central de México. El estudio resulta novedoso porque se retoman las variables demográficas y psicográficas del análisis de mercado turístico para identificar los perfiles de visitantes de esta área natural. De esta manera, se realiza un análisis estadístico y cartográfico de los datos obtenidos mediante la aplicación de una encuesta estratificada que implicó hacer cruce de variables y el cálculo de desviaciones estándar para algunas de ellas. Finalmente, los resultados se confrontan a partir de los hallazgos de la aún limitada literatura científica producida en torno al visitante del turismo de naturaleza.

  3. Prototipo de vivienda de adobe con energías renovables: caso de estudio localidad de Raíces, Área Natural Protegida del Parque Nacional del Nevado de Toluca, Estado de México

    Directory of Open Access Journals (Sweden)

    Mercedes Ramírez Rodríguez

    2013-01-01

    Full Text Available Como una alternativa a la construcción de la vivienda, este artículo introduce una nueva tecnología para edificar un prototipo de casa de adobe con energías renovables. Se muestrauna metodología para su diseño que se establece a partir de las características de las viviendas de la localidad de Raíces, ubicada en el municipio de Zinacantepec, dentro del territorio del Parque Nacional del Nevado de Toluca, espacio natural protegido por Decreto en 1936.

  4. Nivel de adecuación del territorio para el desarrollo de especies agrícolas y forestales en el Parque Nacional Nevado de Toluca

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    HÉCTOR HUGO REGIL-GARCÍA

    2009-01-01

    Full Text Available El Parque Nacional Nevado de Toluca es una importante reserva de recursos naturales del Estado de México. En la recuperación de los ecosistemas forestales se planteó como objetivo determinar el grado de adecuación para el desarrollo de especies forestales nativas y cultivos en la zona. En este trabajo se presenta una metodología basada en la aplicación de sistemas de información geográfica (SIG para evaluar algunos requerimientos de las especies (climáticos, fisiográficos y edáficos y generar mapas criterios de adecuación. El análisis permitió obtener la ocupación óptima del suelo de cuatro especies forestales y dos especies agrícolas.

  5. High-resolution DEM generation from multiple remote sensing data sources for improved volcanic hazard assessment - a case study from Nevado del Ruiz, Colombia

    Science.gov (United States)

    Deng, Fanghui; Dixon, Timothy H.; Rodgers, Mel; Charbonnier, Sylvain J.; Gallant, Elisabeth A.; Voss, Nicholas; Xie, Surui; Malservisi, Rocco; Ordoñez, Milton; López, Cristian M.

    2017-04-01

    Eruptions of active volcanoes in the presence of snow and ice can cause dangerous floods, avalanches and lahars, threatening millions of people living close to such volcanoes. Colombia's deadliest volcanic hazard in recorded history was caused by Nevado del Ruiz Volcano. On November 13, 1985, a relatively small eruption triggered enormous lahars, killing over 23,000 people in the city of Armero and 2,000 people in the town of Chinchina. Meltwater from a glacier capping the summit of the volcano was the main contributor to the lahars. From 2010 to present, increased seismicity, surface deformation, ash plumes and gas emissions have been observed at Nevado del Ruiz. The DEM is a key parameter for accurate prediction of the pathways of lava flows, pyroclastic flows, and lahars. While satellite coverage has greatly improved the quality of DEMs around the world, volcanoes remain a challenging target because of extremely rugged terrain with steep slopes and deeply cut valleys. In this study, three types of remote sensing data sources with different spatial scales (satellite radar interferometry, terrestrial radar interferometry (TRI), and structure from motion (SfM)) were combined to generate a high resolution DEM (10 m) of Nevado del Ruiz. 1) Synthetic aperture radar (SAR) images acquired by TSX/TDX satellites were applied to generate DEM covering most of the study area. To reduce the effect of geometric distortion inherited from SAR images, TSX/TDX DEMs from ascending and descending orbits were merged to generate a 10×10 m DEM. 2) TRI is a technique that uses a scanning radar to measure the amplitude and phase of a backscattered microwave signal. It provides a more flexible and reliable way to generate DEMs in steep-slope terrain compared with TSX/TDX satellites. The TRI was mounted at four different locations to image the upper slopes of the volcano. A DEM with 5×5 m resolution was generated by TRI. 3) SfM provides an alternative for shadow zones in both TSX/TDX and

  6. Treinta años después de la erupción del volcán Nevado del Ruiz: memorias, voces, reparación y escenarios de participación

    OpenAIRE

    Viviana Ramírez Loaiza; Lina Andrea Zambrano Hernández; María Camila Gutiérrez Rodríguez; Andrés Carvajal Díaz; Teresa Armijos Burneo

    2017-01-01

    El presente artículo de investigación tiene como objetivos: primero, describir las tendencias y los aspectos de la memoria narrada en sobrevivientes de la tragedia de 1985, a causa de la erupción del volcán Nevado del Ruiz, en Caldas y Tolima; segundo, conocer su incidencia en los modos de habitar de personas que actualmente viven en zonas de alto riesgo volcánico. La estrategia metodológica se apoyó en algunas técnicas e instrumentos empleados en el Proyecto Strengthening Resilience in Volca...

  7. Cambio de uso del suelo y vegetación en el Parque Nacional Nevado de Toluca, México, en el periodo 1972-2000

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    Sergio Franco Maass

    2012-02-01

    Full Text Available Para conocer el estado de conservación del Parque Nacional Nevado de Toluca (PNNT, se analizaron los cambios en el uso del suelo y vegetación ocurridos entre 1972 y el 2000. Para ello fue preciso obtener cartografía digital mediante procesos de digitalización y fotointerpretación. Los mapas obtenidos se basaron en el sistema de clasificación del INEGI, serie 1. La aplicación de un sistema de información geográfica (SIG permitió obtener la densidad de la cobertura forestal y analizar el cambio de uso de suelo y vegetación, identificando los procesos de disminución y/o incremento en la densidad de las zonas forestales. En el periodo estudiado, poco más de 9 700 ha de bosques de pino, latifoliadas u oyamel, sufrieron pérdidas de densidad, esto representó 20% de la superficie del área natural protegida. Las zonas boscosas que mostraron incrementos apenas alcanzaron 4 800 ha. El enfoque metodológico adoptado resultó especialmente válido para obtener información detallada y con un alto nivel de precisión. Dicha información constituye un punto de partida para estudios a profundidad del parque nacional.

  8. Cambios en las propiedades del suelo, posteriores a un incendio en el Parque Nacional Natural de Los Nevados, Colombia Soil changes after a fire event in a páramo ecosystem: Los Nevados Natural National Park, Colombia

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    Juan Carlos Camargo-García

    2012-04-01

    Full Text Available En 2006 ocurrió un incendio en el Parque Nacional Natural de Los Nevados, Colombia, que afectó aproximadamente 2400 ha de ecosistema de páramo de sectores aledaños a la laguna del Otún (4 ° 46' 58.4" N y 75° 24' 26.8" O. Teniendo en cuenta la posible afectación de algunos servicios ecosistémicos proveídos por el suelo y la necesidad de encontrar variables que puedan ser utilizadas como indicadores del estado de este recurso, se realizó una evaluación de las propiedades físicas y químicas de los suelos en áreas afectadas (AA y no afectadas (NA por el incendio. Las evaluaciones se tuvieron inmediatamente después del evento (2006, dos años (2008 y tres años (2009 después. Se incluyeron áreas donde se implementaron estrategias de restauración y dos posiciones en el relieve: valle (turberas y laderas. Para identificar diferencias en las características del suelo evaluadas entre sitios afectados y no-afectados, posiciones topográficas y los tratamientos de restauración, se hizo una prueba no-paramétrica de Kruskall-Wallis. Posteriormente, para verificar relaciones entre variables, se realizó un análisis de correlación usando el coeficiente de Sperman. En general, la posición de valle mostró los cambios más drásticos en el suelo a través del tiempo de evaluación. Allí, más del 50% de la materia orgánica se perdió, generando cambios también en algunas propiedades físicas como la densidad aparente y la estabilidad estructural, que después de tres años, y a pesar de las actividades de restauración, muestran evidentes problemas de degradación. Con los resultados obtenidos ha sido posible definir variables indicadoras de las condiciones del suelo, que podrían ser usadas en programas de monitoreo de este recurso. Así mismo, se evidencia que los procesos de restauración en este ecosistema son lentos y se requiere un tiempo prolongado para generar cambios positivos en las propiedades de los suelos afectados, que

  9. Geothermal potential assessment of the Nevado del Ruiz volcano based on rock thermal conductivity measurements and numerical modeling of heat transfer

    Science.gov (United States)

    Vélez, Maria Isabel; Blessent, Daniela; Córdoba, Sebastián; López-Sánchez, Jacqueline; Raymond, Jasmin; Parra-Palacio, Eduardo

    2018-01-01

    This work presents an estimation of the geothermal potential of the Nevado del Ruiz (NDR) volcano, bridging the knowledge gap to develop geothermal energy in Colombia and improve resource estimates in South America. Field work, laboratory measurements, geological interpretations, 2D numerical modeling, and uncertainty analysis were conducted to the northwest of the NDR to assess temperature at depth and define thermal energy content. About 60 rock samples were collected at outcrops to measure thermal conductivity with a needle probe. A 2D numerical model, built from an inferred geological cross-section, was developed with the software OpenGeoSys to simulate the underground temperature distribution and then estimate the geothermal potential of a 1 km2 area with sufficient temperature, assuming a recovery factor equal to 2.4% and a 30 years exploitation time. Coupled groundwater flow and heat transfer were simulated in steady-state considering two different thermal conductivity scenarios. Results show that the average estimated potential is 1.5 × 10-2 MWt m-1 of the reservoir thickness, considering temperatures greater than 150 °C located at a depth of approximately 2 km, in a selected area situated outside of the Los Nevados National Natural Park (NNP), to avoid any direct intervention on this protected area. According to a Monte Carlo analysis considering pessimist and optimist scenarios of thermal conductivity, the estimated geothermal power was 1.54 × 10-2 MW m-1 (σ = 2.91 × 10-3 MW m-1) and 1.88 × 10-2 MW/m (σ = 2.91 × 10-3 MW m-1) for the two modeling scenario considered.

  10. Características Cinemáticas y Condiciones de Deformación de un Segmento de la Falla Palestina al NE del Volcán Nevado del Ruíz

    OpenAIRE

    Mejía Toro, Eliana Lucía

    2012-01-01

    El propósito de este trabajo fue contribuir y mejorar el entendimiento de la geología local, regional y tectónica de la Cordillera Central, a partir del conocimiento de la cinemática de las fallas al oeste del Volcán Nevado del Ruíz (VNR), su relación con el sistema geotérmico asociado y la caracterización de fases deformativas de las rocas aflorantes en los alrededores de la Falla Palestina. Mediante la interpretación de fotografías aéreas e imágenes de satélite, en conjunción con el anális...

  11. Perturbation and melting of snow and ice by the 13 November 1985 eruption of Nevado del Ruiz, Colombia, and consequent mobilization, flow and deposition of lahars

    Science.gov (United States)

    Pierson, T.C.; Janda, R.J.; Thouret, J.-C.; Borrero, C.A.

    1990-01-01

    A complex sequence of pyroclastic flows and surges erupted by Nevado del Ruiz volcano on 13 November 1985 interacted with snow and ice on the summit ice cap to trigger catastrophic lahars (volcanic debris flows), which killed more than 23,000 people living at or beyond the base of the volcano. The rapid transfer of heat from the hot eruptive products to about 10 km2 of the snowpack, combined with seismic shaking, produced large volumes of meltwater that flowed downslope, liquefied some of the new volcanic deposits, and generated avalanches of saturated snow, ice and rock debris within minutes of the 21:08 (local time) eruption. About 2 ?? 107 m3 of water was discharged into the upper reaches of the Molinos, Nereidas, Guali, Azufrado and Lagunillas valleys, where rapid entrainment of valley-fill sediment transformed the dilute flows and avalanches to debris flows. Computed mean velocities of the lahars at peak flow ranged up to 17 m s-1. Flows were rapid in the steep, narrow upper canyons and slowed with distance away from the volcano as flow depth and channel slope diminished. Computed peak discharges ranged up to 48,000 m3 s-1 and were greatest in reaches 10 to 20 km downstream from the summit. A total of about 9 ?? 107 m3 of lahar slurry was transported to depositional areas up to 104 km from the source area. Initial volumes of individual lahars increased up to 4 times with distance away from the summit. The sedimentology and stratigraphy of the lahar deposits provide compelling evidence that: (1) multiple initial meltwater pulses tended to coalesce into single flood waves; (2) lahars remained fully developed debris flows until they reached confluences with major rivers; and (3) debris-flow slurry composition and rheology varied to produce gradationally density-stratified flows. Key lessons and reminders from the 1985 Nevado del Ruiz volcanic eruption are: (1) catastrophic lahars can be generated on ice- and snow-capped volcanoes by relatively small eruptions; (2

  12. Destrucción de tierras en el flanco oriental del Nevado de Toluca, el caso de la cuenca del arroyo El Zaguán

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    José Luis Palacio-Prieto

    1988-01-01

    Full Text Available Changes in landuse and the presence of an erodible lithology (pumice lapilli are the main factors controlling the accelerated erosion in the eastern slope of the Nevado de Toluca volcano, state of Mexico. A detailed geomorphological study of a small catchment allowed the recognition of several unstable sectors along the catchment, requiring prior attention in order to avoid problems due to silting in dams, roads and towns. Among the uns­table sectors, first order streams and external portions in mean­ders developed in pumice lahars and tephra ace included.

  13. Efectos de la erupción del volcán nevado del Ruiz, ocurrida el 13-noviembre-1985, sobre la atmósfera en Colombia. Caso: humedad

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    Eslava Ramírez Jesús Antonio

    1995-10-01

    Full Text Available

    Este es el tercer artículo en el que se analiza el electo de la erupción del volcán Nevado del Ruiz del 13-11-85, sobre las diferentes propiedades atmosféricas. En trabajos anteriores se analizaron los cambios temporales ocasionados en la Insolación (horas de brillo solar y la temperatura del aire. Acá se muestran los efectos que se ocasionaron en la humedad del aire, los cuales comenzaron desde el día anterior por los gases y cenizas emitidas con anterioridad y que por efecto de los movimientos locales y generales del aire se habían acumulado en sectores ubicados al W y NW del volcán.

    Effects on the different atmospheric properties due to Volcano Nevado del Ruiz activity on Nov.13.85, are shows here as a continuation of several publish previous works, were has been analyzed, air temperature, and sunshine changes. This article shows the air humidity effects, starting one day before, due to the action of the previous volcanic gases and ashes emitted which were located and accumulated to Wand NW of the volcano by action of the local and general movements.

     

  14. Vapour discharges on Nevado del Ruiz during the recent activity: Clues on the composition of the deep hydrothermal system and its effects on thermal springs

    Science.gov (United States)

    Federico, Cinzia; Inguaggiato, Salvatore; Chacón, Zoraida; Londoño, John Makario; Gil, Edwing; Alzate, Diego

    2017-10-01

    The Nevado del Ruiz volcano is considered one of the most active volcanoes in Colombia, which can potentially threaten approximately 600,000 inhabitants. The existence of a glacier and several streams channelling in some main rivers, flowing downslope, increases the risk for the population living on the flank of the volcano in case of unrest, because of the generation of lahars and mudflows. Indeed, during the November 1985 subplinian eruption, a lahar generated by the sudden melting of the glacier killed twenty thousand people in the town of Armero. Moreover, the involvement of the local hydrothermal system has produced in the past phreatic and phreatomagmatic activity, as occurred in 1989. Therefore, the physico-chemical conditions of the hydrothermal system as well as its contribution to the shallow thermal groundwater and freshwater in terms of enthalpy and chemicals require a close monitoring. The phase of unrest occurred since 2010 and culminated with an eruption in 2012, after several years of relative stability, still maintains a moderate alert, as required by the high seismicity and SO2 degassing. In October 2013, a sampling campaign has been performed on thermal springs and stream water, located at 2600-5000 m of elevation on the slope of Nevado del Ruiz, analyzed for water chemistry and stable isotopes. Some of these waters are typically steam-heated (low pH and high sulfate content) by the vapour probably separating from a zoned hydrothermal system. By applying a model of steam-heating, based on mass and enthalpy balances, we have estimated the mass rate of hydrothermal steam discharging in the different springs. The composition of the hottest thermal spring (Botero Londono) is probably representative of a marginal part of the hydrothermal system, having a temperature of 250 °C and low salinity (Cl 1500 mg/l), which suggest, along with the retrieved isotope composition, a chiefly meteoric origin. The vapour discharged at the steam vent "Nereidas" (3600

  15. Las comunidades vegetales del Zacatonal Alpino de los volcanes Popocatépetl y Nevado de Toluca, Región Central de México.

    NARCIS (Netherlands)

    Almeida-Lenero, L.; Gimenez de Azcarate, J.; Cleef, A.M.; Gonzales Trapaga, A.

    2004-01-01

    This study of the zacatonal alpino zone of the volcanoes Popocatepetl (5452 in) and Nevado de Toluca (4690 m) in the central region of the Transmexican Volcanic Belt, is a follow-up of the study of ALMEIDA et al. (1994). This tropical alpine zacatonal represents the potential vegetation of the

  16. Field guides for excursions to the Nevado del Ruiz Volcano and to the Romeral Fault System (Colombia, in the frame of the Neotectonics of arc-continent collision concepts

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    Borrero Carlos

    2011-06-01

    Full Text Available Central Cordillera of Colombia near to the Nevado del Ruiz volcano, is a seismically active area above the subducting slab of the Nazca plate and deforming upper crust of the Andes. Buildings in the region require strengthening against the effects of both types of hazards: earthquakes and volcanoes. During these trips, we will discuss the 13
    November, 1985, Nevado del Ruiz Volcano eruption that destroyed the Armero city with about 22,000 deceases, as well the 25 January, 1999, Armenia earthquake (M 6.2 that killed about 2000 people and injured 4000 largely as the result of older, poorly 3 constructed buildings. The economic impact of the quake on the region was significant with about 8000 coffee farms either completely or partially destroyed and over 13,000 structures either partially damaged or completely destroyed.
    Both phenomena are associated to a large-transversal structure termed Caldas tear, which is controlling strong motion earthquakes and the Quaternary volcanism of the northern Andes.

  17. Vapor Discharges On Nevado Del Ruiz During The Recent Activity: Clues On The Composition Of The Deep Hydrothermal System And Its Effects On Thermal Springs

    Science.gov (United States)

    Inguaggiato, S.; Federico, C.; Chacon, Z.; Londono, J. M.; Alzate, D. M.; Gil, E.

    2015-12-01

    The Nevado del ruiz volcano (NdR, 5321m asl), one of the most active in Colombia, threatens about 600,000 people. The existence of an ice cap and several streams channeling in some main rivers increase the risk of lahars and mudflows in case of unrest, as occurred during the November 1985 eruption, which caused 20,000 casualties. The involvement of the local hydrothermal system has also produced in the past phreatic and phreatomagmatic activity, as in 1985 and 1989. After more than 7 years of relative stability, since 2010, the still ongoing phase of unrest has produced two small eruption in 2012, and still maintains in high levels of seismicity and SO2 degassing. In October 2013, a sampling campaign has been performed on thermal springs and streamwater, located at 2600-5000 m asl, analyzed for water chemistry and stable isotopes. By applying a model of steam-heating, based on mass and enthalpy balances, we have estimated the mass rate of steam discharging in the different steam-heated springs. The composition of the hottest thermal spring (Botero Londoño) is probably representative of a marginal part of the hydrothermal system, having a temperature of 250°C and low salinity (Cl ~1500 mg/l), which suggest a chiefly meteoric origin, as also confirmed by the isotope composition retrieved for the hydrothermal water. The vapour discharged at the steam vent "Nereidas" (3600 m asl) is hypothesised to be separated from a high-temperature hyrothermal system. Based on its composition and on literature data on fluid inclusions, we have retrieved the P-T-X conditions of the deep hydrothermal system, as well as its pH and fO2. The vapour feeding Nereidas would separate from a byphasic hydrothermal system characterised by the follow parameters: t= 315°C, P=19 MPa, NaCl= 15 %, CO2 = 9%, and similar proportion between liquid and vapour. Considering also the equilibria involving S-bearing gases and HCl, we obtain pH=2, fO2 fixed by FeO-Fe2O3 buffer, and [Cl]=12000 mg/l. Changes

  18. LA SUCESIÓN VEGETAL EN LOS LODOS FLUVIOVOLCÁNICOS DE ARMERO-TOLIMA-COLOMBIA 30 AÑOS DESPUÉS DE LA ERUPCIÓN DEL VOLCÁN ARENAS DEL NEVADO DEL RUIZ

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    Héctor Eduardo Esquivel

    2016-01-01

    Full Text Available Se estudió la dinámica sucesional y la evolución edafológica de una zona de bosque seco tropical afectada por lodos de la erupción volcánica del nevado del Ruiz el 13 de noviembre de 1985. La zona de estudio está ubicada en el municipio de Armero con una extensión de 3500 hectáreas a 450 msnm. Se levantaron 10 parcelas de muestreo de 10 x 20 m, acorde con las consociaciones establecidas por el IGAC. En total los cuatro estudios florísticos reportan 565 especies distribuidas en 72 familias, de las cuales sobresalen la familia Asteraceae, Malvaceae, Fabaceae, Euphorbiaceae y Poaceae. El número de especies ha variado significativamente, para el primer estudio 294 distribuidas en 66 familias, para el segundo 332 especies, para el tercer estudio 284 especies y para el cuarto estudio un total de 217. Al comienzo se confirma lo que Braun Blanquet planteó según la Fitosociología, que en áreas fuertemente disturbadas la vegetación inicialmente se establece en montículos; cinco años después el segundo estudio mostró la formación de asociaciones así: Rhynchelytretum, por estar dominada por el pasto Rhynchelytrum repens (Will Hubb., la asociación Indigoferetum por la alta presencia de Indigofera hirsuta Jacq., Panicetum, por el dominio de Panicum maximum Jacq. y la asociación Ficetum, por la presencia de varias especies de cauchos. La vegetación ha presentado un recambio constante y se reconoce actualmente una formación sucesional avanzada donde domina el hábito de crecimiento arbóreo, conformando relictos de bosque. El pH del suelo ha variado de 3.2 a 6.5, como también varios de los elementos evaluados.

  19. Evaluación del uso agrícola y forestal del suelo en la cuenca del río Temascaltepec, Nevado de Toluca, México

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    Lourdes Villers Ruiz

    1995-06-01

    Full Text Available Characteristics of relief, vegetation, farmland, and forest exploitations were obtained of the Temascaltepec River Basin, in the western and southwestern slopes of the Nevado de Toluca Vulcano, in Central Mexico. The main crops were characterized for each of the 15 communities of the basin. A percentage of the land covered with forest was established for each of the 148 areas considered for forest exploitation. The majority of the forests localized between 2 000 and 3 000 m, have less than 60% of their area covered by woods. Larger cover of forests areas are constituted by Pinus and Abies–Pinus communities. The average slope dominant of the croplands is 11º and its limits are from 4.7º to 11.4 º. The main crops at regional level are corn, oat and potato. The processing and information analysis were done in a GIS PC–based software.

  20. La fuerza del espíritu (fe en el camino (ancestral indígena

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    Paola Andrea Pérez Gil

    2016-01-01

    Full Text Available El mundo de hoy se encuentra encerrado en la visión reduccionista y enajenada que ha sido imperante a lo largo de la historia, el valor del consumo, la ambición y el individualismo han enterrado los valores fundantes de sencillez, humildad y honestidad. La profunda necesidad de volver la mirada al conocimiento y psicología propios, ha hecho que retornemos a la sabiduría de las plantas, los abuelos, lugares sagrados, costumbres y mitos para abandonar la ilusión racionalista que todo lo divide, todo lo niega y nada lo contempla. El camino recorrido en el fuego, la montaña, Sie, el chunsúa, las cansamarias, permite mirar, recordar y recuperar lo fundamental en la existencia humana: su propia fuerza, la fe. Esa que sostiene la vida, que va más allá de verificación o comprobación alguna, que es cultivada en la palabra dulce, el tejido sentido y la esencia misma. Conectando al humano en sus diferentes niveles, a su psiquismo, conectándolo al amor. Por ello, la importancia de vivenciar a Sue, Chía, en y con la Hytcha Guaia, vivenciar al Espíritu en su expresión más latente, aceptar al ego como uno de los maestros para comprender el ser, integrar la materia y lo trascendente, entregarse a la ley de los abuelos, a lo sagrado propio, a la conciencia profunda, al guerrero interno, a la vida misma.

  1. Dinámica y condiciones de vida de la población del Parque Nacional Nevado de Toluca (pnnt en la generación de presión a los ecosistemas circundantes y de impactos ambientales a través de un sistema de información geográfica

    Directory of Open Access Journals (Sweden)

    Rafael Candeau Dufat

    2012-02-01

    Full Text Available Este trabajo tiene como objetivo conocer como influye la dinámica y condiciones de vida de la población de las localidades dentro del Parque Nacional Nevado de Toluca y de su área de influencia inmediata, en la presión a los ecosistemas circundantes y en la generación de impactos ambientales, que propician una mala calidad del bosque y el cambio de uso del suelo, de forestal a agropecuario, urbano o industrial. Para ello se aplicó una novedosa metodología que permitió evaluar la relación entre estos factores socioeconómicos y el grado de deterioro ambiental dado en los geosistemas, estableciéndose en qué regiones se concentra la mayor influencia directa y en qué magnitud lo hacen y, del mismo modo, cuáles son las localidades en donde el impacto se deriva de factores externos.

  2. A common ancestral origin of the frequent and widespread 2299delG USH2A mutation.

    NARCIS (Netherlands)

    Dreyer, B.; Tranebjaerg, L.; Brox, V.; Rosenberg, T.; Moller, C.G.; Beneyto, M.; Weston, M.D.; Kimberling, W.J.; Cremers, C.W.R.J.; Liu, X.Z.; Nilssen, O.

    2001-01-01

    Usher syndrome type IIa is an autosomal recessive disorder characterized by mild-to-severe hearing loss and progressive visual loss due to retinitis pigmentosa. The mutation that most commonly causes Usher syndrome type IIa is a 1-bp deletion, described as "2299delG," in the USH2A gene. The mutation

  3. Tracing the origin and geographic distribution of an ancestral form of the modern human Y chromosome Reconstrucción del origen y distribución geográfica de una forma ancestral del cromosoma Y del hombre moderno

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    CLAUDIO M BRAVI

    2001-03-01

    Full Text Available We screened a total of 841 Y chromosomes representing 36 human populations of wide geographical distribution for the presence of a Y-specific Alu insert (YAP+ chromosomes. The Alu element was found in 77 cases. We tested five biallelic and eight polyallelic markers in 70 out of the 77 YAP+ chromosomes. We could identify the existence of a hierarchical and chronological structuring of ancestral and derived YAP+ lineages giving rise to four haplogroups, 14 subhaplogroups and 60 haplotypes. Moreover, we propose a monophyletic origin for each one of the YAP+ lineages. Out-of-Africa and out_of-Asia models have been suggested to explain the origin and evolution of ancestral and derived YAP+ elements. We analyse the evidence supporting these two hypotheses and we conclude that the information available supports better the out-of-Africa modelSe buscó la presencia de un inserto Alu Y-específico (cromosomas YAP+ en un total de 841 cromosomas Y provenientes de 36 poblaciones humanas de amplia distribución geográfica. El elemento Alu se encontró en 77 casos. En 70 de los 77 cromosomas YAP+ se testificaron cinco marcadores bialélicos y ocho polialélicos. Se pudo identificar la existencia de una estructura jerárquica y cronológica de linajes YAP+ ancestrales y derivados, la cual generó cuatro haplogrupos, 14 subhaplogrupos, y 60 haplotipos. Se propone un origen monofilético para cada linaje YAP+. Dos modelos intentan explicar el origen y evolución de los cromosomas YAP+ ancestrales y derivados: (i origen del inserto Alu en Africa y posterior migración a otros continentes ("out-of-Africa"; (ii origen en Asia con subsecuente migración a otras áreas geográficas ("out-of-Asia". El análisis de la evidencia que apoya estos dos modelos nos permite sugerir que la hipótesis más probable es el origen africano con subsecuente dispersión fuera de Africa

  4. Ancestral Relationships Using Metafounders

    DEFF Research Database (Denmark)

    Legarra, Andres; Christensen, Ole Fredslund; Vitezica, Zulma G

    2015-01-01

    due to finite size of the ancestral population and connections between populations. This complicates the conciliation of both approaches and, in particular, combining pedigree with genomic relationships. We present a coherent theoretical framework to consider base population in pedigree relationships....... We suggest a conceptual framework that considers each ancestral population as a finite-sized pool of gametes. This generates across-individual relationships and contrasts with the classical view where each population is considered as an infinite, unrelated pool. Several ancestral populations may...... be connected and therefore related. Each ancestral population can be represented as a "metafounder", a pseudo-individual included as founder of the pedigree and similar to an "unknown parent group". Metafounders have self- and across- relationships according to a set of parameters, which measure ancestral...

  5. Evolución del cuidado desde una práctica ancestral hasta ser la esencia del profesional de enfermería

    Directory of Open Access Journals (Sweden)

    Mirith Vásquez Munive

    2013-10-01

    Full Text Available Cuidar ha sido desde tiempos inmemoriales una capacidad inherente e identificativa del sexo femenino, que se extendió al generó masculino en el momento de la división sexual del trabajo; en este punto nació una forma de cuidar diferente, de acuerdo a las capacidades físicas de cada cual, y a las labores que hasta ese momento habían sido la responsabilidad de hombres por un lado y mujeres por el otro. Significa esto que hay varias formas de cuidar, cada una dependiendo de las características individuales de la vida de cada ser humano, pero todos, absolutamente todos tenemos la capacidad de cuidar. Luego, cuando fue necesario, que una persona se encargara de preservar la salud de los individuos de la comunidad, y adoptara medidas curativas, apareció la mujer como cuidadora, por la sapiencia acumulada a través de la observación de la naturaleza, que la dotó de un bagaje de conocimientos que no poseía ningún otro ser diferente a ella. Aquí surgió la mujer como cuidadora natural, empírica, y pragmática, y con el paso del tiempo llegó a la mujer preparada académicamente, para brindar un cuidado, organizado de acuerdo al conocimiento científico, es decir hasta la enfermera del día de hoy, ampliamente preparada para brindar cuidado de calidad. (Duazary 2006; 1: 76 - 80.

  6. Cambios en el régimen hídrico de la laguna Lasuntay y Chuspicocha por variaciones en el Nevado Huaytapallana

    OpenAIRE

    Jacinto Arroyo Aliaga; Pedro Gurmendi Párraga

    2011-01-01

    Objetivos: Estimar los efectos de las variaciones de torrentes de agua de los glaciares del Nevado Huaytapallana que emanan al sistema hídrico de las lagunas de Lasuntay y Chuspicocha. Métodos: Se utilizó el método general teórico deductivo de nivel explicativo, con un diseño no experimental del tipo transversal en el tratamiento de información; como método específico se ha utilizado el balance de masa del glaciar para el cálculo de volúmenes de agua de los torrentes a partir de la instalació...

  7. Are palaeoscolecids ancestral ecdysozoans?

    Science.gov (United States)

    Harvey, Thomas H P; Dong, Xiping; Donoghue, Philip C J

    2010-01-01

    The reconstruction of ancestors is a central aim of comparative anatomy and evolutionary developmental biology, not least in attempts to understand the relationship between developmental and organismal evolution. Inferences based on living taxa can and should be tested against the fossil record, which provides an independent and direct view onto historical character combinations. Here, we consider the nature of the last common ancestor of living ecdysozoans through a detailed analysis of palaeoscolecids, an early and extinct group of introvert-bearing worms that have been proposed to be ancestral ecdysozoans. In a review of palaeoscolecid anatomy, including newly resolved details of the internal and external cuticle structure, we identify specific characters shared with various living nematoid and scalidophoran worms, but not with panarthropods. Considered within a formal cladistic context, these characters provide most overall support for a stem-priapulid affinity, meaning that palaeoscolecids are far-removed from the ecdysozoan ancestor. We conclude that previous interpretations in which palaeoscolecids occupy a deeper position in the ecdysozoan tree lack particular morphological support and rely instead on a paucity of preserved characters. This bears out a more general point that fossil taxa may appear plesiomorphic merely because they preserve only plesiomorphies, rather than the mélange of primitive and derived characters anticipated of organisms properly allocated to a position deep within animal phylogeny.

  8. Abdias do Nascimento y Manuel Zapata Olivella: intelectuales del siglo XX en el sendero de la discursividad ancestral yoruba y bantú

    Directory of Open Access Journals (Sweden)

    Denilson Lima Santos

    2014-01-01

    Full Text Available En este ensayo planteamos el texto literario como un espacio de re - escritura de las tradiciones yoruba s y bantúes como fuerza motriz creadora de un discurso literario. Las voces africanas en las Américas aparecen recuperadas en un modelo estético diferente del hegemónico. Como ejemplo de eso, se propone describir las obras: Sortilégio II: mistério negro de Zumbi redivivo (1979, de Abdias do Nascimento (1914 - 2011, y Changó, el gran putas (1983, de Manuel Zapata Olivella (1920 - 2004. Los autores de estas obras, como intelectuales, se posicionan como insurrectos, como conscientes de las voces heterogéneas q ue habitan el mundo afrolatino y ponen esas voces como parte de la estética de sus textos. Así, los intelectuales afrolatinos proponen una escritura de la ancestralidad afro con propósitos estéticos y políticos en la tradición literaria latinoamericana.

  9. Cambios en el régimen hídrico de la laguna Lasuntay y Chuspicocha por variaciones en el Nevado Huaytapallana

    Directory of Open Access Journals (Sweden)

    Jacinto Arroyo Aliaga

    2011-12-01

    Full Text Available Objetivos: Estimar los efectos de las variaciones de torrentes de agua de los glaciares del Nevado Huaytapallana que emanan al sistema hídrico de las lagunas de Lasuntay y Chuspicocha. Métodos: Se utilizó el método general teórico deductivo de nivel explicativo, con un diseño no experimental del tipo transversal en el tratamiento de información; como método específico se ha utilizado el balance de masa del glaciar para el cálculo de volúmenes de agua de los torrentes a partir de la instalación de una red de balizas en la mayor parte del glaciar y en la zona de acumulación y ablación se excavaron pozos mediante perforaciones para medir directamente la cantidad de nieve acumulada entre el inicio y el fin del año hidrológico. Resultados: Se ha estimado los torrentes de caudal de agua que emanan del nevado Huaytapallana a las lagunas de Lasuntay y Chuspicocha en 1 226 700 m3 en la estación de verano; y de 245 340 m3 en la estación de primavera. Conclusiones: El volumen máximo de acumulación en ambas lagunas fue en el verano y el volumen mínimo en la estación de primavera, debido a las variaciones en el régimen hídrico del sistema de acumulación y ablación que afectan la disponibilidad de agua.

  10. Integrating Principles Underlying Ancestral Spirits Belief in ...

    African Journals Online (AJOL)

    , associated with ancestral spirits and its use as powerful therapeutic agent for influencing behavior or lifestyle changes. Explanatory models of attachment to ancestral spirits by living descendants are first discussed, followed by a discussion ...

  11. Assessment of cellulolytic microorganisms in soils of Nevados Park, Colombia

    Directory of Open Access Journals (Sweden)

    Lizeth Manuela Avellaneda-Torres

    2014-12-01

    Full Text Available A systematized survey was conducted to find soil-borne microbes that degrade cellulose in soils from unique ecosystems, such as the Superpáramo, Páramo, and the High Andean Forest in the Nevados National Natural Park (NNNP, Colombia. These high mountain ecosystems represent extreme environments, such as high levels of solar radiation, low atmospheric pressure, and extreme daily changes in temperature. Cellulolytic activity of the microorganisms was evaluated using qualitative tests, such as growth in selective media followed by staining with congo red and iodine, and quantitative tests to determine the activity of endoglucanase, β-glucosidase, exoglucanase, and total cellulase. Microorganisms were identified using molecular markers, such as the 16S rRNA gene for bacteria and the internal transcribed spacer region (ITS of ribosomal DNA for fungi. Multivariate statistical analysis (MVA was used to select microorganisms with high cellulolytic capacity. A total of 108 microorganisms were isolated from the soils and, in general, the enzymatic activities of fungi were higher than those of bacteria. Our results also found that none of the organisms studied were able to degrade all the components of the cellulose and it is therefore suggested that a combination of bacteria and/or fungi with various enzymatic activities be used to obtain high total cellulolytic activity. This study gives an overview of the potential microorganism that could be used for cellulose degradation in various biotechnological applications and for sustainable agricultural waste treatment.

  12. Miocene to Recent structural evolution of the Nevado de Toluca volcano region, Central Mexico

    Science.gov (United States)

    García-Palomo, A.; Macías, J. L.; Garduño, V. H.

    2000-03-01

    Based on aerial photography, satellite imagery, and detailed field work, a geological and structural model of Nevado de Toluca and its surroundings is presented. The Nevado de Toluca volcano is built upon the intersection of three complex fault systems of different age, orientation, and kinematics. These systems from the older to the younger are: (a) The Taxco-Querétaro Fault System (NNW-SSE) with clear expression south of the volcano; (b) The San Antonio Fault System (NE-SW) that runs between the San Antonio and Nevado de Toluca volcanoes; and (c) The Tenango Fault System (E-W) located to the east of Nevado de Toluca volcano. Our field data, supported by previous studies, suggest that these systems have coexisted since the late Miocene. In addition, the stratigraphy, chronology, and kinematics of fault planes point to the existence of at least three main deformation events that have affected the region since the late Miocene. During the early Miocene, an extensional phase with the same deformation style as the Basin and Range tectonics of northern Mexico caused the formation of horsts and grabens south of Nevado de Toluca and allowed the intrusion of sub-vertical dikes oriented NW-SE and NNW-SSE. During the middle Miocene, a transcurrent episode generated NE-SW faults that presented two main motions: the first movement was left-lateral with a σ3 oriented NW-SE and later turned into normal through a counter-clockwise rotation of σ3 up to a N-S position. The latest deformation phase started during the late Pliocene and produced oblique extension ( σ3 oriented NE-SW) along E-W-trending faults that later changed to pure extension by shifting of σ3 to a N-S orientation. These faults appear to control the late Pleistocene to Holocene monogenetic volcanism, the flank collapses of Nevado de Toluca volcano and the seismic activity of the region.

  13. REGEN: Ancestral Genome Reconstruction for Bacteria

    OpenAIRE

    Yang, Kuan; Heath, Lenwood S.; Setubal, João C.

    2012-01-01

    Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deleti...

  14. Late Pleistocene-Holocene cataclysmic eruptions at Nevado de Toluca and Jocotitlan volcanoes, central Mexico

    Science.gov (United States)

    Macias, J.L.; Garcia, P.A.; Arce, J.L.; Siebe, C.; Espindola, J.M.; Komorowski, J.C.; Scott, K.

    1997-01-01

    This field guide describes a five day trip to examine deposits of Late Pleistocene-Holocene cataclysmic eruptions at Nevado de Toluca and Jocotitlan volcanoes in central Mexico. We will discuss the stratigraphy, petrology, and sedimentological characteristics of these deposits which provide insights into the eruptive history, type of volcanic activity, and transport and emplacement mechanisms of pyroclastic materials. These parameters will allow us to discuss the kinds of hazards and the risk that they pose to populations around these volcanoes. The area to be visited is tectonically complex thus we will also discuss the location of the volcanoes with respect to the tectonic environment. The first four days of the field trip will be dedicated to Nevado de Toluca Volcano (19 degrees 09'N; 99 degrees 45'W) located at 23 km. southwest of the City of Toluca, and is the fourth highest peak in the country, reaching an elevation of 4,680 meters above sea level (m.a.s.l.). Nevado de Toluca is an andesitic-dacitic stratovolcano, composed of a central vent excavated upon the remains of older craters destroyed by former events. Bloomfield and Valastro, (1974, 1977) concluded that the last cycle of activity occurred nearly equal 11,600 yr. ago. For this reason Nevado de Toluca has been considered an extinct volcano. Our studies, however, indicate that Nevado de Toluca has had at least two episodes of cone destruction by sector collapse as well as several explosive episodes including plinian eruptions and dome-destruction events. These eruptions occurred during the Pleistocene but a very young eruption characterized by surge and ash flows occurred ca. 3,300 yr. BP. This new knowledge of the volcano's eruptive history makes the evaluation of its present state of activity and the geological hazards necessary. This is important because the area is densely populated and large cities such as Toluca and Mexico are located in its proximity.

  15. The Quaternary history of effusive volcanism of the Nevado de Toluca area, Central Mexico

    Science.gov (United States)

    Torres-Orozco, R.; Arce, J. L.; Layer, P. W.; Benowitz, J. A.

    2017-11-01

    Andesite and dacite lava flows and domes, and intermediate-mafic cones from the Nevado de Toluca area were classified into five groups using field data and 40Ar/39Ar geochronology constraints. Thirty-four lava units of diverse mineralogy and whole-rock major-element geochemistry, distributed between the groups, were identified. These effusive products were produced between ∼1.5 and ∼0.05 Ma, indicating a mid-Pleistocene older-age for Nevado de Toluca volcano, coexisting with explosive products that suggest a complex history for this volcano. A ∼0.96 Ma pyroclastic deposit attests for the co-existence of effusive and explosive episodes in the mid-Pleistocene history. Nevado de Toluca initiated as a composite volcano with multiple vents until ∼1.0 Ma, when the activity began to centralize in an area close to the present-day crater. The modern main edifice reached its maximum height at ca. 50 ka after bulky, spiny domes erupted in the current summit of the crater. Distribution and geochemical behavior in major elements of lavas indicate a co-magmatic relationship between different andesite and dacite domes and flows, although unrelated to the magmatism of the monogenetic volcanism. Mafic-intermediate magma likely replenished the system at Nevado de Toluca since ca. ∼1.0 Ma and contributed to the eruption of new domes, cones, as well as effusive-explosive activity. Altogether, field and laboratory data suggest that a large volume of magma was ejected around 1 Ma in and around the Nevado de Toluca.

  16. Ancestral sequence reconstruction with Maximum Parsimony

    OpenAIRE

    Herbst, Lina; Fischer, Mareike

    2017-01-01

    One of the main aims in phylogenetics is the estimation of ancestral sequences based on present-day data like, for instance, DNA alignments. One way to estimate the data of the last common ancestor of a given set of species is to first reconstruct a phylogenetic tree with some tree inference method and then to use some method of ancestral state inference based on that tree. One of the best-known methods both for tree inference as well as for ancestral sequence inference is Maximum Parsimony (...

  17. Chemical characteristics of the crater lakes of Popocatetetl, El Chichon, and Nevado de Toluca volcanoes, Mexico

    Science.gov (United States)

    Armienta, M. A.; De la Cruz-Reyna, S.; Macías, J. L.

    2000-04-01

    Three crater lakes from Mexican volcanoes were sampled and analyzed at various dates to determine their chemical characteristics. Strong differences were observed in the chemistry among the three lakes: Nevado de Toluca, considered as dormant, El Chichón at a post-eruptive stage, and Popocatépetl at a pre-eruptive stage. Not surprisingly, no influence of volcanic activity was found at the Nevado de Toluca volcano, while the other volcanoes showed a correlation between the changing level of activity and the evolution of chemical trends. Low pHs (Nevado de Toluca Sun lake. Changes with time were observed at Popocatépetl and El Chichón. Concentrations of volcanic-gas derived species like Cl-, SO42- and F- decreased irregularly at El Chichón from 1983 until 1997. Major cations concentrations also diminished at El Chichón. A 100% increase in the SO42- content was measured at Popocatépetl between 1985 and 1994. An increase in the Mg/Cl ratio between 1992 (Mg/Cl=0.085) and 1994 (Mg/Cl=0.177) was observed at Popocatépetl, before the disappearance of the crater lake in 1994. It is concluded that chemical analysis of crater lakes may provide a useful additional tool for active-volcano monitoring.

  18. Ancestral sequence alignment under optimal conditions

    Directory of Open Access Journals (Sweden)

    Brown Daniel G

    2005-11-01

    Full Text Available Abstract Background Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multiple alignments. Many popular alignment algorithms for DNA use the sum-of-pairs heuristic, where the score of a multiple alignment is the sum of its induced pairwise alignment scores. However, the biological meaning of the sum-of-pairs of pairs heuristic is not obvious. Additionally, many algorithms based on the sum-of-pairs heuristic are complicated and slow, compared to pairwise alignment algorithms. An alternative approach to aligning alignments is to first infer ancestral sequences for each alignment, and then align the two ancestral sequences. In addition to being fast, this method has a clear biological basis that takes into account the evolution implied by an underlying phylogenetic tree. In this study we explore the accuracy of aligning alignments by ancestral sequence alignment. We examine the use of both maximum likelihood and parsimony to infer ancestral sequences. Additionally, we investigate the effect on accuracy of allowing ambiguity in our ancestral sequences. Results We use synthetic sequence data that we generate by simulating evolution on a phylogenetic tree. We use two different types of phylogenetic trees: trees with a period of rapid growth followed by a period of slow growth, and trees with a period of slow growth followed by a period of rapid growth. We examine the alignment accuracy of four ancestral sequence reconstruction and alignment methods: parsimony, maximum likelihood, ambiguous parsimony, and ambiguous maximum likelihood. Additionally, we compare against the alignment accuracy of two sum-of-pairs algorithms: ClustalW and the heuristic of Ma, Zhang, and Wang. Conclusion We find that allowing ambiguity in ancestral sequences does not lead to better multiple alignments. Regardless of whether we use parsimony or maximum likelihood, the

  19. REGEN: Ancestral Genome Reconstruction for Bacteria

    Directory of Open Access Journals (Sweden)

    João C. Setubal

    2012-07-01

    Full Text Available Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.

  20. REGEN: Ancestral Genome Reconstruction for Bacteria.

    Science.gov (United States)

    Yang, Kuan; Heath, Lenwood S; Setubal, João C

    2012-07-18

    Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.

  1. Coccidia in passerines from the Nevado de Toluca National Park, Mexico.

    Science.gov (United States)

    Medina, Juan P; Salgado-Miranda, Celene; García-Conejo, Michele; Galindo-Sánchez, Karla P; Mejía-García, Cristian J; Janczur, Mariusz K; Gomes Lopes, Carlos W; Berto, Bruno P; Soriano-Vargas, Edgardo

    2014-03-01

    In this study, we found unsporulated coccidia oocysts in passerines from the Nevado de Toluca National Park, Mexico. We captured birds and took samples of their droppings during three field visits. We examined a total of 72 fecal samples and found unsporulated coccidia oocysts in 10 samples from five passerine species: Atlapetes pileatus (3), Cardelina ruber (1), Mniotilta varia (1), Oreothlypis celata (2) and Regulus calendula (3). This appears to be the first recorded study of unsporulated coccidia oocysts in passerine species from Mexico.

  2. Staging Sacrifice: Performing History, Memory, and Ancestral ...

    African Journals Online (AJOL)

    Returning and recurring cultural forms, ancestral incarnations, theatrical imaginations, and racial memories in African plays construct a specific kind of historicity - the conjuring of the dead and the revitalization of cosmic energy or spiritual power. These formations perpetuate the construction of Africa and African-ness ...

  3. Ancestral Sequence Reconstruction with Maximum Parsimony.

    Science.gov (United States)

    Herbst, Lina; Fischer, Mareike

    2017-12-01

    One of the main aims in phylogenetics is the estimation of ancestral sequences based on present-day data like, for instance, DNA alignments. One way to estimate the data of the last common ancestor of a given set of species is to first reconstruct a phylogenetic tree with some tree inference method and then to use some method of ancestral state inference based on that tree. One of the best-known methods both for tree inference and for ancestral sequence inference is Maximum Parsimony (MP). In this manuscript, we focus on this method and on ancestral state inference for fully bifurcating trees. In particular, we investigate a conjecture published by Charleston and Steel in 1995 concerning the number of species which need to have a particular state, say a, at a particular site in order for MP to unambiguously return a as an estimate for the state of the last common ancestor. We prove the conjecture for all even numbers of character states, which is the most relevant case in biology. We also show that the conjecture does not hold in general for odd numbers of character states, but also present some positive results for this case.

  4. Volcanic hazard zonation of the Nevado de Toluca volcano, México

    Science.gov (United States)

    Capra, L.; Norini, G.; Groppelli, G.; Macías, J. L.; Arce, J. L.

    2008-10-01

    The Nevado de Toluca is a quiescent volcano located 20 km southwest of the City of Toluca and 70 km west of Mexico City. It has been quiescent since its last eruptive activity, dated at ˜ 3.3 ka BP. During the Pleistocene and Holocene, it experienced several eruptive phases, including five dome collapses with the emplacement of block-and-ash flows and four Plinian eruptions, including the 10.5 ka BP Plinian eruption that deposited more than 10 cm of sand-sized pumice in the area occupied today by Mexico City. A detailed geological map coupled with computer simulations (FLOW3D, TITAN2D, LAHARZ and HAZMAP softwares) were used to produce the volcanic hazard assessment. Based on the final hazard zonation the northern and eastern sectors of Nevado de Toluca would be affected by a greater number of phenomena in case of reappraisal activity. Block-and-ash flows will affect deep ravines up to a distance of 15 km and associated ash clouds could blanket the Toluca basin, whereas ash falls from Plinian events will have catastrophic effects for populated areas within a radius of 70 km, including the Mexico City Metropolitan area, inhabited by more than 20 million people. Independently of the activity of the volcano, lahars occur every year, affecting small villages settled down flow from main ravines.

  5. Assessing the Accuracy of Ancestral Protein Reconstruction Methods

    OpenAIRE

    Williams, Paul D; Pollock, David D; Blackburne, Benjamin P; Goldstein, Richard A

    2006-01-01

    The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method. Every inference method leads to errors in the ancestral protein sequence, resulting in potentially misleading estimates of the ancestral protein's properties. To assess the accuracy of ancestral protein reconstruction methods, we performed computational population evolu...

  6. Long term storage of explosively erupted magma at Nevado de Toluca volcano, Mexico

    Science.gov (United States)

    Arce, J. L.; Gardner, J.; Macias, J. L.

    2007-12-01

    Dacitic magmas production is common in subduction-related volcanoes, occurring in those with a long period of activity as a result of the magmatic evolution. However, in this evolution many factors (i.e. crystal fractionation, assimilation, magma mixing) can interact to produce dacites. Nevado de Toluca volcano (4,680 masl; 19°09'N; 99°45'W) Central Mexico has recorded a long period of time producing dacites explosively, at least during 42 ka of activity, involving several km3 of magma, with two important Plinian-type eruptions occurred at ~21.7 ka (Lower Toluca Pumice) and ~10.5 ka (Upper Toluca Pumice). Questions like, what was the mechanism responsible to produce voluminous dacitic magma and how the volatiles and pressure changed in the Nevado de Toluca system, remain without answers. Dacites from the Lower Toluca Pumice (LTP) contain plagioclase, amphibole, iron-titanium oxides, and minor resorbed biotite, set in a glassy-vesicular matrix and the Upper Toluca Pumice (UTP) dacites contain the same mineral phases plus orthopyroxene. Ilmenite- ulvospinel geothermometry yielded a temperature of ~860°C for the LTP dacite, a little hotter than the UTP (~ 840°C). Based on hydrothermal experiments data, amphibole is stable above 100 MPa under 900°C, while plagioclase crystallizes up to 250-100 MPa at temperatures of 850-900°C. Pyroxene occurs only at pressures of 200-100 MPa with its respective temperatures of 825-900°C. Water contents in the LTP magma (2-3.5 wt %) are similar to that calculated for the UTP magma (1.3-3.6 wt %). So, there are only small changes in temperature and pressure from ~21.7 ka to 10.5 ka. It is noteworthy that orthopyroxene is absent in the LTP, however reaction-rimmed biotite (probably xenocrystic) is commonly observed in all dacites. Hence, almost all dacitic magmas seem to be stored at relatively similar pressures, water contents, and temperatures. All of these data could suggest repetitive basic magma injections producing the

  7. The ancestral complement system in sea urchins.

    Science.gov (United States)

    Smith, L C; Clow, L A; Terwilliger, D P

    2001-04-01

    The origin of adaptive immunity in the vertebrates can be traced to the appearance of the ancestral RAG genes in the ancestral jawed vertebrate; however, the innate immune system is more ancient. A central subsystem within innate immunity is the complement system, which has been identified throughout and seems to be restricted to the deuterostomes. The evolutionary history of complement can be traced from the sea urchins (members of the echinoderm phylum), which have a simplified system homologous to the alternative pathway, through the agnathans (hagfish and lamprey) and the elasmobranchs (sharks and rays) to the teleosts (bony fish) and tetrapods, with increases in the numbers of complement components and duplications in complement pathways. Increasing complexity in the complement system parallels increasing complexity in the deuterostome animals. This review focuses on the simplest of the complement systems that is present in the sea urchin. Two components have been identified that show significant homology to vertebrate C3 and factor B (Bf), called SpC3 and SpBf, respectively. Sequence analysis from both molecules reveals their ancestral characteristics. Immune challenge of sea urchins indicates that SpC3 is inducible and is present in coelomic fluid (the body fluids) in relatively high concentrations, while SpBf expression is constitutive and is present in much lower concentrations. Opsonization of foreign cells and particles followed by augmented uptake by phagocytic coelomocytes appears to be a central function for this simpler complement system and important for host defense in the sea urchin. These activities are similar to some of the functions of the homologous proteins in the vertebrate complement system. The selective advantage for the ancestral deuterostome may have been the amplification feedback loop that is still of central importance in the alternative pathway of complement in higher vertebrates. Feedback loop functions would quickly coat

  8. Alteration related to hydrothermal activity of the Nevado del Ruiz volcano (NRV), Colombia

    International Nuclear Information System (INIS)

    Forero, Jhon; Zuluaga, Carlos; Mojica, Jaime

    2011-01-01

    The hydrothermal activity in the NRV generates alteration characterized by mineral associations depending one number of physic-chemical factors of the hydrothermal system. Petrography of unaltered rocks was used to establish the mineral assemblage prior to rock-fluid interaction. XRD was used in altered rocks, where it was not possible to recognize the alteration products. the observed mineral assemblages indicate advanced and intermediate argillic alterations, this and the observation of very low modal proportion of sulphates, sulphides and native sulphur in some areas could point to a low sulphidation zone. However, the proximity to the volcano and the presence of acid thermal waters and steam pose an apparent contradiction with an expected high sulphidation zone which is explained by climatic conditions, where excess water has dissolved and leached sulfides, sulphur and sulphates close to the volcano. fault zones serve as conducts for fluid transport and have acid-sulphate mineral associations produced by atmospheric oxidation at the water table in a steam-heated environment of H 2 S released by deeper, boiling fluids or by the disproportionation of magmatic SO 2 to H 2 S and H 2 SO 4 during condensation of magmatic vapor plume at intermedia depths in magmatic hydrothermal environment in andesitic volcanic terrain characteristic of high sulphidation zones.

  9. Numerical modeling of debris avalanches at Nevado de Toluca (Mexico): implications for hazard evaluation and mapping

    Science.gov (United States)

    Grieco, F.; Capra, L.; Groppelli, G.; Norini, G.

    2007-05-01

    The present study concerns the numerical modeling of debris avalanches on the Nevado de Toluca Volcano (Mexico) using TITAN2D simulation software, and its application to create hazard maps. Nevado de Toluca is an andesitic to dacitic stratovolcano of Late Pliocene-Holocene age, located in central México near to the cities of Toluca and México City; its past activity has endangered an area with more than 25 million inhabitants today. The present work is based upon the data collected during extensive field work finalized to the realization of the geological map of Nevado de Toluca at 1:25,000 scale. The activity of the volcano has developed from 2.6 Ma until 10.5 ka with both effusive and explosive events; the Nevado de Toluca has presented long phases of inactivity characterized by erosion and emplacement of debris flow and debris avalanche deposits on its flanks. The largest epiclastic events in the history of the volcano are wide debris flows and debris avalanches, occurred between 1 Ma and 50 ka, during a prolonged hiatus in eruptive activity. Other minor events happened mainly during the most recent volcanic activity (less than 50 ka), characterized by magmatic and tectonic-induced instability of the summit dome complex. According to the most recent tectonic analysis, the active transtensive kinematics of the E-W Tenango Fault System had a strong influence on the preferential directions of the last three documented lateral collapses, which generated the Arroyo Grande and Zaguàn debris avalanche deposits towards E and Nopal debris avalanche deposit towards W. The analysis of the data collected during the field work permitted to create a detailed GIS database of the spatial and temporal distribution of debris avalanche deposits on the volcano. Flow models, that have been performed with the software TITAN2D, developed by GMFG at Buffalo, were entirely based upon the information stored in the geological database. The modeling software is built upon equations

  10. Approximate maximum parsimony and ancestral maximum likelihood.

    Science.gov (United States)

    Alon, Noga; Chor, Benny; Pardi, Fabio; Rapoport, Anat

    2010-01-01

    We explore the maximum parsimony (MP) and ancestral maximum likelihood (AML) criteria in phylogenetic tree reconstruction. Both problems are NP-hard, so we seek approximate solutions. We formulate the two problems as Steiner tree problems under appropriate distances. The gist of our approach is the succinct characterization of Steiner trees for a small number of leaves for the two distances. This enables the use of known Steiner tree approximation algorithms. The approach leads to a 16/9 approximation ratio for AML and asymptotically to a 1.55 approximation ratio for MP.

  11. Robustness of ancestral sequence reconstruction to phylogenetic uncertainty.

    Science.gov (United States)

    Hanson-Smith, Victor; Kolaczkowski, Bryan; Thornton, Joseph W

    2010-09-01

    Ancestral sequence reconstruction (ASR) is widely used to formulate and test hypotheses about the sequences, functions, and structures of ancient genes. Ancestral sequences are usually inferred from an alignment of extant sequences using a maximum likelihood (ML) phylogenetic algorithm, which calculates the most likely ancestral sequence assuming a probabilistic model of sequence evolution and a specific phylogeny--typically the tree with the ML. The true phylogeny is seldom known with certainty, however. ML methods ignore this uncertainty, whereas Bayesian methods incorporate it by integrating the likelihood of each ancestral state over a distribution of possible trees. It is not known whether Bayesian approaches to phylogenetic uncertainty improve the accuracy of inferred ancestral sequences. Here, we use simulation-based experiments under both simplified and empirically derived conditions to compare the accuracy of ASR carried out using ML and Bayesian approaches. We show that incorporating phylogenetic uncertainty by integrating over topologies very rarely changes the inferred ancestral state and does not improve the accuracy of the reconstructed ancestral sequence. Ancestral state reconstructions are robust to uncertainty about the underlying tree because the conditions that produce phylogenetic uncertainty also make the ancestral state identical across plausible trees; conversely, the conditions under which different phylogenies yield different inferred ancestral states produce little or no ambiguity about the true phylogeny. Our results suggest that ML can produce accurate ASRs, even in the face of phylogenetic uncertainty. Using Bayesian integration to incorporate this uncertainty is neither necessary nor beneficial.

  12. EVALUATION OF PRIMARY PRODUCTIVITY AT THE WILDLIFE PROTECTED AREA, "NEVADO DE TOLUCA" MEXICO, DURING THE DRY SEASON

    Directory of Open Access Journals (Sweden)

    J. Martínez-Hernández

    2014-08-01

    Full Text Available This is the first report on grassland primary productivity for the wildlife protected area Nevado de Toluca (APFF Nevado de Toluca. We evaluated three communities in this area during dry season: Loma Alta, La Peñuela y Agua Blanca. Following Hodgson (1994, for this study we used exclusion cages. Vegetation was cut every 28 days during a five months sampling period. A randomized block design was used, where the blocks represented the grassland communities and the different months constituted treatments. The month of September showed the higher production (610.3 kg/ha DM. No significant differences were observed among communities (P >0.05. In conclusion, these communities have similar low primary productivity through the evaluation dry season months, which in addition was found lower in comparison to other areas, therefore livestock grazing in this region should be limited this season.

  13. Ancestral genome organization: an alignment approach.

    Science.gov (United States)

    Holloway, Patrick; Swenson, Krister; Ardell, David; El-Mabrouk, Nadia

    2013-04-01

    We present a comparative genomics approach for inferring ancestral genome organization and evolutionary scenarios, based on present-day genomes represented as ordered gene sequences with duplicates. We develop our methodology for a model of evolution restricted to duplication and loss, and then show how to extend it to other content-modifying operations, and to inversions. From a combinatorial point of view, the main consequence of ignoring rearrangements is the possibility of formulating the problem as an alignment problem. On the other hand, duplications and losses are asymmetric operations that are applicable to one of the two aligned sequences. Consequently, an ancestral genome can directly be inferred from a duplication-loss scenario attached to a given alignment. Although alignments are a priori simpler to handle than rearrangements, we show that a direct approach based on dynamic programming leads, at best, to an efficient heuristic. We present an exact pseudo-boolean linear programming algorithm to search for the optimal alignment along with an optimal scenario of duplications and losses. Although exponential in the worst case, we show low running times on real datasets as well as synthetic data. We apply our algorithm (*) in a phylogenetic context to the evolution of stable RNA (tRNA and rRNA) gene content and organization in Bacillus genomes. Our results lead to various biological insights, such as rates of ribosomal RNA proliferation among lineages, their role in altering tRNA gene content, and evidence of tRNA class conversion.

  14. Transposition of foliations and superposition of lineations during polyphase deformation in the Nevado-Filabride complex: tectonic implications

    Science.gov (United States)

    Ruiz-Fuentes, Alejandro; Aerden, Domingo G. A. M.

    2018-01-01

    Detailed structural analysis in a ca. 80 km2 area of the western Nevado-Filabride complex (Betic Cordillera) reveals a heterogeneous internal structure characterized by multiple cross-cutting foliations and lineations that locally transpose earlier ones. The large-scale geometry of these fabrics conflicts with continuous westward to south-westward tectonic transport related to thrusting or crustal extension, and mismatches a previously inferred extensional detachment in the area. Multiple crenulation lineations can be distinguished in the field and correlated with five foliation intersection axes (FIA1-5) preserved in garnet and plagioclase porphyroblasts of the western Sierra Nevada. These indicate crustal shortening in different directions associated with vertical foliation development and intermitted stages of gravitational collapse producing horizontal foliations. The large spread of lineation- and fold-axes trends in the Nevado-Filabride complex results from the mixed presence of multiple generations of these structures whose distinction is critical for tectonic models. The five principal FIA trends remarkably match successive vectors of relative Africa-Iberia plate motion since the Eocene, suggesting that deformation of the Nevado-Filabride took place during this period, although peak metamorphism in at least some of its parts was reached as late as the Middle Miocene.

  15. Equilibrium Line Altitude Fluctuation on the South West Slope of Nevado Coropuna Since The Last Glacial Maximum (Cordillera Ampato, Perú

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    Campos, Néstor

    2015-12-01

    Full Text Available The main aim of this research was to reconstruct the LLGM (local last glacial maximum, 1955 and 2007 glacial phases on the South West slope of Nevado Coropuna to obtain valuable information on the changes that have occurred and analyze the glacier evolution. For this purpose the ELA (Equilibrium Line Altitude indicator has been used as a reference, with the AABR (Area x Altitude Balance Ratio method, based on the principle of weighting the mass balance according to the distance above or below the ELA of that area. An ELA of 4762 m was obtained for the LLGM, 5779 m for 1955 and 5850 m for 2007, implying a vertical shift of 1088 m from the LLGM to 2007 and of 71 m from 1955 to 2007. The total glaciated surface was reduced by 21.5% between 1955 and 2007 and the temperature shift from LLGM to 2007 was 9.13 ºC (0.0091ºC/m. The ice of glaciers makes them valuable for climate research, this method offers quantitative information and the analysis of this data may contribute to research into climate change and climatic trends for future predictions.El principal objetivo de esta investigación es reconstruir las fases glaciares del Último Máximo Glaciar Local (LLGM, 1955 y 2007 en la vertiente Suroeste del Nevado Coropuna para obtener información sobre los cambios ocurridos y analizar la evolución glaciar. Para este propósito el indicador de la altitud de la línea de equilibrio glaciar (ELA ha sido utilizado como referencia, calculado con el método AABR (Area x Altitude Balance Ratio, basado en el principio de ponderación del balance de masa en función de la distancia por encima o debajo de la ELA de esa área. Se obtuvo una ELA de 4762 m para el LLGM, 5779 m para 1955 y 5850 m para 2007, lo que implica una variación de 1088 m desde el LLGM hasta el 2007 y 71 m desde 1955 hasta 2007. La superficie total glaciada se redujo un 21,5% entre 1955 y 2007 y la variación de temperatura desde el LLGM hasta 2007 fue de 9,13 ºC (0,0091ºC/m. El hielo

  16. Assessing the accuracy of ancestral protein reconstruction methods.

    Directory of Open Access Journals (Sweden)

    Paul D Williams

    2006-06-01

    Full Text Available The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method. Every inference method leads to errors in the ancestral protein sequence, resulting in potentially misleading estimates of the ancestral protein's properties. To assess the accuracy of ancestral protein reconstruction methods, we performed computational population evolution simulations featuring near-neutral evolution under purifying selection, speciation, and divergence using an off-lattice protein model where fitness depends on the ability to be stable in a specified target structure. We were thus able to compare the thermodynamic properties of the true ancestral sequences with the properties of "ancestral sequences" inferred by maximum parsimony, maximum likelihood, and Bayesian methods. Surprisingly, we found that methods such as maximum parsimony and maximum likelihood that reconstruct a "best guess" amino acid at each position overestimate thermostability, while a Bayesian method that sometimes chooses less-probable residues from the posterior probability distribution does not. Maximum likelihood and maximum parsimony apparently tend to eliminate variants at a position that are slightly detrimental to structural stability simply because such detrimental variants are less frequent. Other properties of ancestral proteins might be similarly overestimated. This suggests that ancestral reconstruction studies require greater care to come to credible conclusions regarding functional evolution. Inferred functional patterns that mimic reconstruction bias should be reevaluated.

  17. Assessing the accuracy of ancestral protein reconstruction methods.

    Science.gov (United States)

    Williams, Paul D; Pollock, David D; Blackburne, Benjamin P; Goldstein, Richard A

    2006-06-23

    The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method. Every inference method leads to errors in the ancestral protein sequence, resulting in potentially misleading estimates of the ancestral protein's properties. To assess the accuracy of ancestral protein reconstruction methods, we performed computational population evolution simulations featuring near-neutral evolution under purifying selection, speciation, and divergence using an off-lattice protein model where fitness depends on the ability to be stable in a specified target structure. We were thus able to compare the thermodynamic properties of the true ancestral sequences with the properties of "ancestral sequences" inferred by maximum parsimony, maximum likelihood, and Bayesian methods. Surprisingly, we found that methods such as maximum parsimony and maximum likelihood that reconstruct a "best guess" amino acid at each position overestimate thermostability, while a Bayesian method that sometimes chooses less-probable residues from the posterior probability distribution does not. Maximum likelihood and maximum parsimony apparently tend to eliminate variants at a position that are slightly detrimental to structural stability simply because such detrimental variants are less frequent. Other properties of ancestral proteins might be similarly overestimated. This suggests that ancestral reconstruction studies require greater care to come to credible conclusions regarding functional evolution. Inferred functional patterns that mimic reconstruction bias should be reevaluated.

  18. Development of green tea scented with organic roses "Vitality" from Nevado Ecuador

    Directory of Open Access Journals (Sweden)

    Elena Beltrán

    2014-12-01

    Full Text Available (Received: 2014/11/03 - Accepted: 2014/12/15The aim of this study was to obtain a flavored green tea with organic rose petals "Vitality" from Nevado Ecuador. Green tea, purchased from a private company, it was subjected to analysis to verify compliance with the requirements of standard INEN 2381: 2005. The Characterization of fresh rose petals was to made and for the dehydration was used two temperatures and two geometries. Analysis of total polyphenol content (Folin-Ciocalteu and antioxidant capacity (TEACmethod were performed. The dried petals, with a higher content of polyphenols and antioxidant capacity, were used in the preparation to flavored tea. Three formulations with different amounts of dried rose petals (10, 17.5 and 25% were tested sensorially by 100 judges to determine the aroma rose in the tea. The final product was analyzed to determine compliance of the requirements of the standard INEN of the tea. Finally acceptability and purchase intention of the product is evaluated. The values of content total polyphenol in the extracts of rose petals were superior to fruits such as blackberries, and strawberries.

  19. Catalytic Promiscuity of Ancestral Esterases and Hydroxynitrile Lyases.

    Science.gov (United States)

    Devamani, Titu; Rauwerdink, Alissa M; Lunzer, Mark; Jones, Bryan J; Mooney, Joanna L; Tan, Maxilmilien Alaric O; Zhang, Zhi-Jun; Xu, Jian-He; Dean, Antony M; Kazlauskas, Romas J

    2016-01-27

    Catalytic promiscuity is a useful, but accidental, enzyme property, so finding catalytically promiscuous enzymes in nature is inefficient. Some ancestral enzymes were branch points in the evolution of new enzymes and are hypothesized to have been promiscuous. To test the hypothesis that ancestral enzymes were more promiscuous than their modern descendants, we reconstructed ancestral enzymes at four branch points in the divergence hydroxynitrile lyases (HNL's) from esterases ∼ 100 million years ago. Both enzyme types are α/β-hydrolase-fold enzymes and have the same catalytic triad, but differ in reaction type and mechanism. Esterases catalyze hydrolysis via an acyl enzyme intermediate, while lyases catalyze an elimination without an intermediate. Screening ancestral enzymes and their modern descendants with six esterase substrates and six lyase substrates found higher catalytic promiscuity among the ancestral enzymes (P promiscuous and catalyzed both hydrolysis and lyase reactions with many substrates. A broader screen tested mechanistically related reactions that were not selected for by evolution: decarboxylation, Michael addition, γ-lactam hydrolysis and 1,5-diketone hydrolysis. The ancestral enzymes were more promiscuous than their modern descendants (P = 0.04). Thus, these reconstructed ancestral enzymes are catalytically promiscuous, but HNL1 is especially so.

  20. Pleistocene cohesive debris flows at Nevado de Toluca Volcano, central Mexico

    Science.gov (United States)

    Capra, L.; Macías, J. L.

    2000-10-01

    During the Pleistocene, intense hydrothermal alteration promoted a flank failure of the southern portion of Nevado de Toluca volcano. This event produced a debris avalanche that transformed into a cohesive debris flow (Pilcaya deposit) owing to water saturation and weakness of the altered pre-avalanche rocks. The Pilcaya debris flow traveled along a narrow tectonic depression up to a distance of 40 km and then spread over a flat plain reaching up to 55 km from the volcano summit. This transition zone corresponds with a sudden break in slope from 5 to 0.5° that caused a rapid reduction in velocity and thickening of the flow that consequently reduced its competence to transport large particles. The resulting deposit thickens from 15 to 40 m, and contains boulders up to 15 m in diameter that form hummocky morphology close to the transitional zone. Sometime after the emplacement of the Pilcaya debris flow, heavy rains and superficial drainage contributed to remobilize the upper portions of the deposit causing two secondary lahars. These debris flows called El Mogote, traveled up to 75 km from the volcano. The edifice collapse generated lahars with a total volume of 2.8 km3 that devastated an approximate area of 250 km2. The area versus volume plot for both deposits shows that the magnitude of the event is comparable to other cohesive debris flows such as the Teteltzingo lahar (Pico de Orizaba, Mexico) and the Osceola mudflow (Mount Rainier, Wa). The Pilcaya debris flow represents additional evidence of debris flow transformed from a flank failure, a potentially devastating phenomenon that could threaten distant areas from the volcano previously considered without risk.

  1. Magma fluxes and recurreance rate of eruptions at Nevado de Toluca volcano (Mexico)

    Science.gov (United States)

    Weber, Gregor; Probst, Line; Arce, José L.; Caricchi, Luca

    2017-04-01

    Forecasting the frequency and size of volcanic eruptions is a long-term goal for hazard mitigation. The frequency at which a given crustal magmatic system is driven towards a critical state and the magnitude of the resulting volcanic events are linked to the supply rate of fresh magma, crustal properties, and tectonic setting. Our ability to forecast the recurrence rate of eruptions is hampered by the lack of data on key variables such as the average magma flux locally and globally. The aim of this project is to identify the average magma supply rate and injection frequency for eruptions of different magnitude and eruptive style. We centred our study at Nevado de Toluca in Mexico, a subduction-related volcano with an eruptive history spanning about 1.5 million years of comparatively well documented effusive and explosive eruptions dominantly of dacitic composition. We carry out in-situ high precision zircon geochronology for a sequence of eruptions of different magnitude to obtain a distribution of crystal ages from which average crustal magma fluxes can be calculated. Eruptive fluxes will be constrained by extracting lava flow volumes from a digital elevation model. A combination of whole rock and mineral chemistry will provide quantitative insights on petrogenetic processes and on the frequency at which intensive parameters changed within the magma reservoir before the eruptions. Our results will be integrated in a global database including other volcanic systems and literature data to attempt to identify similarities and differences between magmatic reservoirs feeding volcanic eruptions of different magnitude. The final target of this project is to identify the physical factors controlling the recurrence rate of volcanic eruptions at regional and global scale.

  2. Why Meillassoux’s Speculative Materialism Struggles with Ancestrality

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    Ciprian Jeler

    2014-12-01

    Full Text Available This paper shows that Quentin Meillassoux’s speculative materialism doesn’t offer us the means to account for the ancestral statements that the modern sciences produce, i.e. for the scientific statements about events preceding all forms of life. An analysis of the reasons why Meillassoux thinks that the problem of ancestrality problematizes the contemporary self-evidence of correlationism is first offered. The results of this analysis are then applied to speculative materialism itself and the consequences are not very promising: very much like correlationism, speculative materialism explicitly denies what I call the “generalized version of the realistic assumption of science” and, in so doing, renders scientific ancestral statements de jure unverifiable. Therefore, if correlationism is rendered suspicious by the issue of ancestrality, the same can be said of speculative materialism.

  3. WARACS: Wrappers to Automate the Reconstruction of Ancestral Character States.

    Science.gov (United States)

    Gruenstaeudl, Michael

    2016-02-01

    Reconstructions of ancestral character states are among the most widely used analyses for evaluating the morphological, cytological, or ecological evolution of an organismic lineage. The software application Mesquite remains the most popular application for such reconstructions among plant scientists, even though its support for automating complex analyses is limited. A software tool is needed that automates the reconstruction and visualization of ancestral character states with Mesquite and similar applications. A set of command line-based Python scripts was developed that (a) communicates standardized input to and output from the software applications Mesquite, BayesTraits, and TreeGraph2; (b) automates the process of ancestral character state reconstruction; and (c) facilitates the visualization of reconstruction results. WARACS provides a simple tool that streamlines the reconstruction and visualization of ancestral character states over a wide array of parameters, including tree distribution, character state, and optimality criterion.

  4. Why Meillassoux’s Speculative Materialism Struggles with Ancestrality

    OpenAIRE

    Ciprian Jeler

    2014-01-01

    This paper shows that Quentin Meillassoux’s speculative materialism doesn’t offer us the means to account for the ancestral statements that the modern sciences produce, i.e. for the scientific statements about events preceding all forms of life. An analysis of the reasons why Meillassoux thinks that the problem of ancestrality problematizes the contemporary self-evidence of correlationism is first offered. The results of this analysis are then applied to speculative materialism itself and the...

  5. Estudio del impacto de los fluidos volcánicos en el recurso hídrico de la cuenca del río Chinchiná

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    Denis Evelin Erazo Chamorro

    2015-07-01

    Full Text Available La corriente superficial del río Rioclaro constituye uno de los principales tributarios del río Chinchiná y nace en la zona de influencia del volcán Nevado del Ruiz en el municipio de Villamaría, departamento de Caldas (Colombia. Teniendo en cuenta que el impacto de la actividad volcánica puede generar cambios en las condiciones ambientales, la geomorfología de la región y la calidad de elementos vitales como el agua, aire y suelo, en este estudio se busca analizar la variación de parámetros físico-químicos mediante una caracterización del agua a lo largo de la subcuenca de Rioclaro, mediante campañas de monitoreo en los puntos más representativos, seleccionados por la posible influencia volcánica, facilidad de acceso y las condiciones de seguridad de la zona. Los resultados que se obtienen permiten generar una mayor comprensión sobre el posible impacto derivado de los flujos del volcán Nevado del Ruiz y la influencia de fuentes termales sobre el recurso hídrico. Los resultados obtenidos de los análisis fisicoquímicos confirman la influencia del volcán Nevado del Ruiz en las corrientes de agua de la subcuenca de Rioclaro y se evidencia una variación en los valores comunes de las concentraciones de los compuestos analizados para la mayoría de corrientes superficiales de agua dulce.

  6. Reconstruction of the ancestral marsupial karyotype from comparative gene maps

    Science.gov (United States)

    2013-01-01

    Background The increasing number of assembled mammalian genomes makes it possible to compare genome organisation across mammalian lineages and reconstruct chromosomes of the ancestral marsupial and therian (marsupial and eutherian) mammals. However, the reconstruction of ancestral genomes requires genome assemblies to be anchored to chromosomes. The recently sequenced tammar wallaby (Macropus eugenii) genome was assembled into over 300,000 contigs. We previously devised an efficient strategy for mapping large evolutionarily conserved blocks in non-model mammals, and applied this to determine the arrangement of conserved blocks on all wallaby chromosomes, thereby permitting comparative maps to be constructed and resolve the long debated issue between a 2n = 14 and 2n = 22 ancestral marsupial karyotype. Results We identified large blocks of genes conserved between human and opossum, and mapped genes corresponding to the ends of these blocks by fluorescence in situ hybridization (FISH). A total of 242 genes was assigned to wallaby chromosomes in the present study, bringing the total number of genes mapped to 554 and making it the most densely cytogenetically mapped marsupial genome. We used these gene assignments to construct comparative maps between wallaby and opossum, which uncovered many intrachromosomal rearrangements, particularly for genes found on wallaby chromosomes X and 3. Expanding comparisons to include chicken and human permitted the putative ancestral marsupial (2n = 14) and therian mammal (2n = 19) karyotypes to be reconstructed. Conclusions Our physical mapping data for the tammar wallaby has uncovered the events shaping marsupial genomes and enabled us to predict the ancestral marsupial karyotype, supporting a 2n = 14 ancestor. Futhermore, our predicted therian ancestral karyotype has helped to understand the evolution of the ancestral eutherian genome. PMID:24261750

  7. Reproductive function in mice exposed to ancestral and direct irradiation

    International Nuclear Information System (INIS)

    Nash, D.J.; Sprackling, L.S.

    1978-01-01

    Reproduction was studied in 13 inbred strains of mice that had been exposed continuously to 60 Co gamma radiation for varying numbers of generations. At weaning the mice were removed from the irradiation chamber and were tested for reproductive performance. Ancestral and direct levels of irradiation were determined for each animal. Each irradiated or control female was scored as fertile or sterile, and in utero litter counts were made in pregnant females that were dissected past the 10th day of pregnancy. The number of resorptions, dead embryos, and live embryos were counted, and the ratio of living embryos to the total number of embryos was determined for each litter. The overall fertility curves were sigmoid in the range of doses below those which caused complete sterility, which indicated some sort of cumulative damage. In 11 of the 13 strains studied, an increase in ancestral and/or direct irradiation led to significant decreases in fertility. The means of the number alive in the litters for the control and irradiated mice in each strain showed a definite trend toward fewer live mice in utero after irradiation. Least-squares analyses of variance were made to detect possible effects of any of six irradiation variables (ancestral linear, ancestral quadratic, ancestral cubic, direct linear, direct quadratic, or direct cubic) or of strain differences on total litter size and on ratio. Strain effects were significant in each instance. Litter size was more likely to be affected by radiation variables than ratios were

  8. Ancestrality and evolution of trait syndromes in finches (Fringillidae).

    Science.gov (United States)

    Ponge, Jean-François; Zuccon, Dario; Elias, Marianne; Pavoine, Sandrine; Henry, Pierre-Yves; Théry, Marc; Guilbert, Éric

    2017-12-01

    Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from "ancestral" to "derived" strategies. We predicted that generalism, r-selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K-selection, sexual dimorphism, and residence/territoriality as habitat stabilized (collectively called B strategy). We analyzed the correlated evolution of four syndromes, summarizing the covariation between 53 traits, respectively, involved in ecological specialization, r-K gradient, sexual selection, and dispersal/social behaviors in 81 species representative of Fringillidae, a bird family with available natural history information and that shows variability for all these traits. The ancestrality of strategy A was supported for three of the four syndromes, the ancestrality of generalism having a weaker support, except for the core group Carduelinae (69 species). It appeared that two different B-strategies evolved from the ancestral state A, both associated with highly predictable environments: one in poorly seasonal environments, called B1, with species living permanently in lowland tropics, with "slow pace of life" and weak sexual dimorphism, and one in highly seasonal environments, called B2, with species breeding out-of-the-tropics, migratory, with a "fast pace of life" and high sexual dimorphism.

  9. Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates

    Science.gov (United States)

    Huang, Ruiqi; Hippauf, Frank; Rohrbeck, Diana; Haustein, Maria; Wenke, Katrin; Feike, Janie; Sorrelle, Noah; Piechulla, Birgit; Barkman, Todd J.

    2012-01-01

    In this study, we investigated the role for ancestral functional variation that may be selected upon to generate protein functional shifts using ancestral protein resurrection, statistical tests for positive selection, forward and reverse evolutionary genetics, and enzyme functional assays. Data are presented for three instances of protein functional change in the salicylic acid/benzoic acid/theobromine (SABATH) lineage of plant secondary metabolite-producing enzymes. In each case, we demonstrate that ancestral nonpreferred activities were improved upon in a daughter enzyme after gene duplication, and that these functional shifts were likely coincident with positive selection. Both forward and reverse mutagenesis studies validate the impact of one or a few sites toward increasing activity with ancestrally nonpreferred substrates. In one case, we document the occurrence of an evolutionary reversal of an active site residue that reversed enzyme properties. Furthermore, these studies show that functionally important amino acid replacements result in substrate discrimination as reflected in evolutionary changes in the specificity constant (kcat/KM) for competing substrates, even though adaptive substitutions may affect KM and kcat separately. In total, these results indicate that nonpreferred, or even latent, ancestral protein activities may be coopted at later times to become the primary or preferred protein activities. PMID:22315396

  10. Isotopic cycling in a tropical treeline environment: North American monsoon dynamics at Nevado de Colima, Mexico

    Science.gov (United States)

    Hartsough, Peter Christopher

    High elevation sites are especially sensitive to environmental change. One way to get a longer perspective on global change in mountain regions is paleoenvironmental records from tree rings. Data on the response of high elevation species to climatic events is sparse and records used for reconstruction often necessarily come from lower elevation, higher latitude stations. We have set up a unique field site where we are co-monitoring tree growth and weather in real time. In May 2001 we established a monitoring site at 3770m (12,370ft) on Nevado de Colima (19° 34.8'N, 103° 37.3'W) at the western end of the trans-volcanic belt in Southwestern Mexico. The monitoring site consists of an automated weather station and two dendrometer networks for the simultaneous measurement of climate and tree growth parameters. Although we have experienced several equipment setbacks due to the challenging environment, important results relating to growth dynamics and response to climate have surfaced. This field site, near the edge of the tropics, is an important monitoring location for both intra and extra tropical circulation systems. Historical records in the area are of short duration (less than 60 years) so determining the nature of decadal or longer scale fluctuations requires the use of proxy records. Mexican Mountain Pines (Pinus hartwegii Lindl.) growing on Nevado de Colima are under the influence of several large-scale climate features---most notably the North American Monsoon and ENSO. Dendrochronology studies in the region have shown a sensitivity of tree growth to warm season precipitation. The North American Monsoon is still a poorly understood system and an historical perspective is needed for increased confidence in predictive models and forecasting. Careful measurement of tree growth over the five years of the project has led to a clearly defined dormant period over the relatively arid winter. Dendrometer data have shown onset of growth to be closely tied to soil

  11. Initial Time Of Two High Altitude Crater Lakes (Nevado De Toluca, Central Mexico Recorded In Subfossil Cladocera

    Directory of Open Access Journals (Sweden)

    Szeroczyńska Krystyna

    2015-12-01

    Full Text Available The objective of this study was the recognition and reconstruction of the origin of two high altitude lakes and the ecological conditions of their early existence based on subfossil Cladocera and chemical analyses. The study focused on the oldest lacustrine sediments from Lake Sol and Lake Luna, located in the crater of Volcano Nevado de Toluca (Central Mexico. The Nevado de Toluca crater developed approximately 12 ka yr BP. According to the literature, the volcano was last active approximately 3.3 ka yr BP, and the lakes developed after that eruption. The remains of nine Cladocera species were found in the bottom sediments of both lakes. The most dominant taxa were two endemic littoral species: Alona manueli and Iliocryptus nevadensis. The total frequency of Cladocera specimens in both of the sediment cores was very low. No Cladocera remains were recorded in the sediment layer at depths between 123–103 m from Lake Luna. The results of the lithological and geochemical analyses showed that this sediment layer was composed of allochthonous material, probably originating from slid down from the volcanic cone. This was suggested by the content of silica (up to 13%, iron (up to 12%, and titanium (up to 4%. The Cladocera remains recorded in the bottom sediments suggested that both reservoirs developed as freshwater lakes at the beginning of the sedimentation. The calibrated radiocarbon dates obtained for the bottom samples were 4040 to 3990 yr BP for Lake Luna (129 cm and 4485 to 4485 yr BP for Lake Sol (89 cm. The obtained ages were older than the dates of the last eruption, which occurred approximately 3300 yr BP. This result was likely related to the type of radiocarbon dated materials (charcoals.

  12. Ancestral gene synteny reconstruction improves extant species scaffolding.

    Science.gov (United States)

    Anselmetti, Yoann; Berry, Vincent; Chauve, Cedric; Chateau, Annie; Tannier, Eric; Bérard, Sèverine

    2015-01-01

    We exploit the methodological similarity between ancestral genome reconstruction and extant genome scaffolding. We present a method, called ARt-DeCo that constructs neighborhood relationships between genes or contigs, in both ancestral and extant genomes, in a phylogenetic context. It is able to handle dozens of complete genomes, including genes with complex histories, by using gene phylogenies reconciled with a species tree, that is, annotated with speciation, duplication and loss events. Reconstructed ancestral or extant synteny comes with a support computed from an exhaustive exploration of the solution space. We compare our method with a previously published one that follows the same goal on a small number of genomes with universal unicopy genes. Then we test it on the whole Ensembl database, by proposing partial ancestral genome structures, as well as a more complete scaffolding for many partially assembled genomes on 69 eukaryote species. We carefully analyze a couple of extant adjacencies proposed by our method, and show that they are indeed real links in the extant genomes, that were missing in the current assembly. On a reduced data set of 39 eutherian mammals, we estimate the precision and sensitivity of ARt-DeCo by simulating a fragmentation in some well assembled genomes, and measure how many adjacencies are recovered. We find a very high precision, while the sensitivity depends on the quality of the data and on the proximity of closely related genomes.

  13. Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

    Science.gov (United States)

    Cheng, Feng; Mandáková, Terezie; Wu, Jian; Xie, Qi; Lysak, Martin A; Wang, Xiaowu

    2013-05-01

    The genus Brassica includes several important agricultural and horticultural crops. Their current genome structures were shaped by whole-genome triplication followed by extensive diploidization. The availability of several crucifer genome sequences, especially that of Chinese cabbage (Brassica rapa), enables study of the evolution of the mesohexaploid Brassica genomes from their diploid progenitors. We reconstructed three ancestral subgenomes of B. rapa (n = 10) by comparing its whole-genome sequence to ancestral and extant Brassicaceae genomes. All three B. rapa paleogenomes apparently consisted of seven chromosomes, similar to the ancestral translocation Proto-Calepineae Karyotype (tPCK; n = 7), which is the evolutionarily younger variant of the Proto-Calepineae Karyotype (n = 7). Based on comparative analysis of genome sequences or linkage maps of Brassica oleracea, Brassica nigra, radish (Raphanus sativus), and other closely related species, we propose a two-step merging of three tPCK-like genomes to form the hexaploid ancestor of the tribe Brassiceae with 42 chromosomes. Subsequent diversification of the Brassiceae was marked by extensive genome reshuffling and chromosome number reduction mediated by translocation events and followed by loss and/or inactivation of centromeres. Furthermore, via interspecies genome comparison, we refined intervals for seven of the genomic blocks of the Ancestral Crucifer Karyotype (n = 8), thus revising the key reference genome for evolutionary genomics of crucifers.

  14. Musculature in sipunculan worms: ontogeny and ancestral states.

    Science.gov (United States)

    Schulze, Anja; Rice, Mary E

    2009-01-01

    Molecular phylogenetics suggests that the Sipuncula fall into the Annelida, although they are morphologically very distinct and lack segmentation. To understand the evolutionary transformations from the annelid to the sipunculan body plan, it is important to reconstruct the ancestral states within the respective clades at all life history stages. Here we reconstruct the ancestral states for the head/introvert retractor muscles and the body wall musculature in the Sipuncula using Bayesian statistics. In addition, we describe the ontogenetic transformations of the two muscle systems in four sipunculan species with different developmental modes, using F-actin staining with fluorescent-labeled phalloidin in conjunction with confocal laser scanning microscopy. All four species, which have smooth body wall musculature and less than the full set of four introvert retractor muscles as adults, go through developmental stages with four retractor muscles that are eventually reduced to a lower number in the adult. The circular and sometimes the longitudinal body wall musculature are split into bands that later transform into a smooth sheath. Our ancestral state reconstructions suggest with nearly 100% probability that the ancestral sipunculan had four introvert retractor muscles, longitudinal body wall musculature in bands and circular body wall musculature arranged as a smooth sheath. Species with crawling larvae have more strongly developed body wall musculature than those with swimming larvae. To interpret our findings in the context of annelid evolution, a more solid phylogenetic framework is needed for the entire group and more data on ontogenetic transformations of annelid musculature are desirable.

  15. A comparison of ancestral state reconstruction methods for quantitative characters.

    Science.gov (United States)

    Royer-Carenzi, Manuela; Didier, Gilles

    2016-09-07

    Choosing an ancestral state reconstruction method among the alternatives available for quantitative characters may be puzzling. We present here a comparison of seven of them, namely the maximum likelihood, restricted maximum likelihood, generalized least squares under Brownian, Brownian-with-trend and Ornstein-Uhlenbeck models, phylogenetic independent contrasts and squared parsimony methods. A review of the relations between these methods shows that the maximum likelihood, the restricted maximum likelihood and the generalized least squares under Brownian model infer the same ancestral states and can only be distinguished by the distributions accounting for the reconstruction uncertainty which they provide. The respective accuracy of the methods is assessed over character evolution simulated under a Brownian motion with (and without) directional or stabilizing selection. We give the general form of ancestral state distributions conditioned on leaf states under the simulation models. Ancestral distributions are used first, to give a theoretical lower bound of the expected reconstruction error, and second, to develop an original evaluation scheme which is more efficient than comparing the reconstructed and the simulated states. Our simulations show that: (i) the distributions of the reconstruction uncertainty provided by the methods generally make sense (some more than others); (ii) it is essential to detect the presence of an evolutionary trend and to choose a reconstruction method accordingly; (iii) all the methods show good performances on characters under stabilizing selection; (iv) without trend or stabilizing selection, the maximum likelihood method is generally the most accurate. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Modeling X-linked ancestral origins in multiparental populations

    NARCIS (Netherlands)

    Zheng, Chaozhi

    2015-01-01

    The models for the mosaic structure of an individual's genome from multiparental populations have been developed primarily for autosomes, whereas X chromosomes receive very little attention. In this paper, we extend our previous approach to model ancestral origin processes along two X chromosomes

  17. An Epistemological Analysis of the African Ontology of `Ancestral ...

    African Journals Online (AJOL)

    The paper explores the contemporary debate surrounding the idea of ancestral reincarnation in African society and philosophy. It analyzes various problem areas having to do with the physical and spiritual status of ancestors, their relationship with their societies of orientation, the philosophical contexts of their existence, ...

  18. Are survival processing memory advantages based on ancestral priorities?

    Science.gov (United States)

    Soderstrom, Nicholas C; McCabe, David P

    2011-06-01

    Recent research has suggested that our memory systems are especially tuned to process information according to its survival relevance, and that inducing problems of "ancestral priorities" faced by our ancestors should lead to optimal recall performance (Nairne & Pandeirada, Cognitive Psychology, 2010). The present study investigated the specificity of this idea by comparing an ancestor-consistent scenario and a modern survival scenario that involved threats that were encountered by human ancestors (e.g., predators) or threats from fictitious creatures (i.e., zombies). Participants read one of four survival scenarios in which the environment and the explicit threat were either consistent or inconsistent with ancestrally based problems (i.e., grasslands-predators, grasslands-zombies, city-attackers, city-zombies), or they rated words for pleasantness. After rating words based on their survival relevance (or pleasantness), the participants performed a free recall task. All survival scenarios led to better recall than did pleasantness ratings, but recall was greater when zombies were the threat, as compared to predators or attackers. Recall did not differ for the modern (i.e., city) and ancestral (i.e., grasslands) scenarios. These recall differences persisted when valence and arousal ratings for the scenarios were statistically controlled as well. These data challenge the specificity of ancestral priorities in survival-processing advantages in memory.

  19. Les grandes étapes d'évolution d'un volcan andésitique composite: Exemple du Nevado de Toluca (Méxique)

    Science.gov (United States)

    Cantagrel, J. M.; Robin, C.; Vincent, P.

    1981-06-01

    The Nevado de Toluca, in the middle of the Mexican volcanic belt, has been built by two very dissimilar phases. The first one that lasted more than one million years is mainly andesitic. Numerous massive and autobrecciated lava flows of this phase pass outwards into thick conglomeratic formations. The volume of this primitive volcano represents the essential part of the Nevado. After an intense periode of erosion, the second phase is of very short duration (about 100.000 years) and is dacitic in nature. Three main episode can be distinguished: 1. Eruption of important ash and pumice pyroclastic flows related to caldera collapse above a shallow magmatic reservoir. 2. Extrusions of several dacitic domes within and outside the caldera with numerous associated «nuées ardentes» surrounding the volcano. 3. Plinian eruption leading to widespread pumiceous air-fall and to the opening of the present crater inside the caldera. Extrusion of a new small dacitic dome and late phreatic explosions. This second sequence of events can be interpreted as the progressive emptying of the crustal magmatic chamber without refilling by a new magma supply. The most recent activity in the area is represented by monogenic cones and flows of basic andesites outside the central vent system of the Nevado.

  20. Glacial and volcanic evolution on Nevado Coropuna (Tropical Andes) based on cosmogenic 36Cl surface exposure dating

    Science.gov (United States)

    Úbeda, J.; Palacios, D.; Vázquez-Selém, L.

    2012-04-01

    We have reconstructed the evolution of the paleo-glaciers of the volcanic complex Nevado Coropuna (15°S, 72°W; 6377 m asl) through the interpretation and dating of geomorphological evidences. Surface exposure dating (SED) based on the accumulation of 36Cl on the surface of moraine boulders, polished bedrock and lava flows allowed: 1) to confirm that the presence of ice masses in the region dates back to >80ka; 2) to produce chronologies of glacial and volcanic phases for the last ~21 ka; and 3) to obtain evidences of the reactivation of volcanic activity after the Last Glacial Maximum. Bromley et al. (2009) presented 3He SED ages of 21 ka for moraine boulders on the Mapa Mayo valley, to the North of Nevado Coropuna. Our 36Cl SED SED for moraine boulders from the valleys on the NE sector of the volcanic complex suggest a maximum initial advance between 20 and 16 ka, followed by another expansion of similar extent at 12-11 ka. On the Southern slope of Nevado Coropuna, the 36Cl ages show a maximum initial advance that reaches to the level of the Altiplano at 14 ka, and a re-advance at ~10-9 ka BP. Other data show minor re-advances at 9 ka on the Northern slope and at 6 ka to the South of the volcanic complex. These minor positive pulses interrupted a fast deglaciation process during the Holocene as shown by two series of 36Cl SED from polished rock surfaces on successively higher altitudes along the valleys of rivers Blanco and Cospanja, to the SW and SE. Despite the global warming occuring since 20 ka, deduced from the record of sea surface paleo-temperature of the Galapago Islands (Lea et al, 2006), the evolution of the fresh-water plankton from Lake Titicaca (Fritz et al, 2007) is consistent with sustained glacial conditions until 10-9 ka as suggested by the present work. Exposure ages of three lava flows indicate a reactivation of the magmatic system as the paleo-glaciers abandonned the slopes. The eruptive activity migrated from the West, where we found a lava

  1. Identificación de áreas críticas de erosión en el Curso Alto del Río Lerma

    Directory of Open Access Journals (Sweden)

    Marivel Hernández Téllez

    2009-01-01

    los municipios más afectados con el fin de instarles a tomar medidas preventivas. Estos municipios corresponden a Santiago Tianguistenco, Lerma y Ocoyoacac que juntos representan 60% de las zonas con grado de erosión extrema. En índices de erosión alta a los anteriores se le suman Otzolotepec, Temoaya, Xalatlaco, Toluca en las faldas del Nevado y Zinacantepec.

  2. Using Resurrected Ancestral Proviral Proteins to Engineer Virus Resistance

    Directory of Open Access Journals (Sweden)

    Asunción Delgado

    2017-05-01

    Full Text Available Proviral factors are host proteins hijacked by viruses for processes essential for virus propagation such as cellular entry and replication. Pathogens and their hosts co-evolve. It follows that replacing a proviral factor with a functional ancestral form of the same protein could prevent viral propagation without fatally compromising organismal fitness. Here, we provide proof of concept of this notion. Thioredoxins serve as general oxidoreductases in all known cells. We report that several laboratory resurrections of Precambrian thioredoxins display substantial levels of functionality within Escherichia coli. Unlike E. coli thioredoxin, however, these ancestral thioredoxins are not efficiently recruited by the bacteriophage T7 for its replisome and therefore prevent phage propagation in E. coli. These results suggest an approach to the engineering of virus resistance. Diseases caused by viruses may have a devastating effect in agriculture. We discuss how the suggested approach could be applied to the engineering of plant virus resistance.

  3. Perianth evolution in Ranunculaceae: are petals ancestral in the family?

    Directory of Open Access Journals (Sweden)

    Sophie Nadot

    2016-04-01

    Full Text Available Progress has been made recently towards the elucidation of phylogenetic relationships among subfamilies and tribes of the Ranunculaceae – the most recent hypothesis was published in 2016 by our team. Although relationships among the 10 tribes of the subfamily Ranunculoideae remain incompletely supported, this hypothesis provides an interesting framework to address the key issue of the ancestral vs. derived nature of a differentiated perianth within the family, and at the level of Ranunculales as a whole. Here, we present ancestral state reconstructions for several perianth characters, such as differentiation into sepals and petals, shape of petals, presence/absence of nectaries, and petaloid or sepaloid aspect of sepals. Characters were scored using the PROTEUS database and optimized on the most recent phylogeny of Ranunculaceae using parsimony and maximum likelihood methods. The results are discussed with regard to recent evo-devo studies focused on identifying genes involved in floral organs identity (the so-called ABC model in Ranunculales.

  4. Prenatal effects of ancestral irradiation in inbred mice

    International Nuclear Information System (INIS)

    Sprackling, L.E.S.

    1975-01-01

    Mice from 13 inbred strains (S, Z, E, Bab, BaB, BrR, C, K, N, Q, G, CFW, CF1) received continuous cobalt 60 irradiation at low dose rates for varying numbers of consecutive generations. Some Bab and BaB mice had received continuous irradiation for from 24 to 31 generations and the other mice had up to six generations of continuous irradiation in their ancestry. At weaning, the mice were removed from the irradiation room and were mated within strains either to sibs or nonsibs. Ancestral and direct irradiation doses were calculated. The ancestral dose was the effective accumulated dose to the progeny of the mated mice. The direct dose was the amount of irradiation received by any mated female from her conception to her weaning. Each irradiated or control female was scored as fertile or sterile and in utero litter counts were made in pregnant females that were dissected past the tenth day of pregnancy; the sum of moles, dead embryos, and live embryos was the total in utero litter size. A ratio of the living embryos to the total number of embryos in utero was determined for each litter. An increase in ancestral or direct irradiation dose significantly decreased fertility in 11 of the 13 strains. The fertility curves for the pooled data were sigmoid in the area of the doses below those that caused complete sterility. Among the controls, there were significant strain differences in total litter size and in the ratio. Strain X--Y plots, with ancestral or direct doses plotted against total litter size or ratio, revealed the tendency for litter size to decrease as dose increased. The only trend shown for ratio was for the litters with ratios of 0.50 or less to appear more frequently among the irradiated mice. The few corpora lutea counts revealed nothing of significance. Generally, there was a definite trend toward fewer mice alive in utero among the irradiated mice

  5. Ancestrality and evolution of trait syndromes in finches (Fringillidae)

    OpenAIRE

    Ponge, Jean‐François; Zuccon, Dario; Elias, Marianne; Pavoine, Sandrine; Henry, Pierre‐Yves; Théry, Marc; Guilbert, Éric

    2017-01-01

    International audience; Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from “ancestral” to “derived” strategies. We predicted that generalism, r-selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K-selection, sexual dimorphism, and residence/territoriality as habitat stabil...

  6. Reconstruction of ancestral RNA sequences under multiple structural constraints

    OpenAIRE

    Tremblay-Savard, Olivier; Reinharz, Vladimir; Waldisp?hl, J?r?me

    2016-01-01

    Background Secondary structures form the scaffold of multiple sequence alignment of non-coding RNA (ncRNA) families. An accurate reconstruction of ancestral ncRNAs must use this structural signal. However, the inference of ancestors of a single ncRNA family with a single consensus structure may bias the results towards sequences with high affinity to this structure, which are far from the true ancestors. Methods In this paper, we introduce achARNement, a maximum parsimony approach that, given...

  7. Cosmogenic 10Be Dating of Early and Latest Holocene Moraines on Nevado Salcantay in the Southern Peruvian Andes

    Science.gov (United States)

    Licciardi, J. M.; Schaefer, J. M.; Lund, D. C.

    2007-12-01

    A two-fold sequence of nested lateral and end moraines was mapped in a glacial trough emanating from the southwest flank of Nevado Salcantay (6271 m; ~13°S latitude), the highest peak in the Cordillera Vilcabamba of southern Peru. The field area is situated 25 km due south of the archaeological site of Machu Picchu. Outer and inner moraines in the sequence were deposited by valley glaciers that terminated ~5 km and ~3 km, respectively, from their headwall on the Salcantay summit massif. Cosmogenic 10Be surface exposure dating of granitic boulders sampled on the Salcantay moraines is underway and has provided the first numerical ages for these deposits. Initial results indicate ages of 8.1 ± 0.1 10Be ka for the outer moraine and 200 ± 20 10Be years for the sharp-crested inner moraine. These ages are derived using the CRONUS-Earth 10Be exposure age calculator (version 2.0) and expressed with respect to the Lal- Stone production rate scaling scheme using the standard atmosphere. The outer and inner moraine ages correspond to glacial events during the early and latest Holocene, respectively. Further 10Be dating of the mapped moraines and similar deposits observed in adjacent drainages on Nevado Salcantay is anticipated to yield a high-resolution chronology of valley glaciation in this segment of the southern Peruvian Andes. The new results bridge an important gap between existing Andean glacier records to the north and south, and complement available ice core and lacustrine paleoclimate records in the vicinity, thereby expanding spatial and temporal coverage for identifying patterns of Holocene climate change in the tropical Andes. Notably, the inner moraine age correlates with the timing of the Little Ice Age as defined in northern mid- and high latitude glacier records, and suggests considerable expansion of valley glaciers in the southern Peruvian Andes during this climatic minimum. Apart from their paleoclimatic significance, the initial results also demonstrate

  8. Molecular paleontology: a biochemical model of the ancestral ribosome.

    Science.gov (United States)

    Hsiao, Chiaolong; Lenz, Timothy K; Peters, Jessica K; Fang, Po-Yu; Schneider, Dana M; Anderson, Eric J; Preeprem, Thanawadee; Bowman, Jessica C; O'Neill, Eric B; Lie, Lively; Athavale, Shreyas S; Gossett, J Jared; Trippe, Catherine; Murray, Jason; Petrov, Anton S; Wartell, Roger M; Harvey, Stephen C; Hud, Nicholas V; Williams, Loren Dean

    2013-03-01

    Ancient components of the ribosome, inferred from a consensus of previous work, were constructed in silico, in vitro and in vivo. The resulting model of the ancestral ribosome presented here incorporates ∼20% of the extant 23S rRNA and fragments of five ribosomal proteins. We test hypotheses that ancestral rRNA can: (i) assume canonical 23S rRNA-like secondary structure, (ii) assume canonical tertiary structure and (iii) form native complexes with ribosomal protein fragments. Footprinting experiments support formation of predicted secondary and tertiary structure. Gel shift, spectroscopic and yeast three-hybrid assays show specific interactions between ancestral rRNA and ribosomal protein fragments, independent of other, more recent, components of the ribosome. This robustness suggests that the catalytic core of the ribosome is an ancient construct that has survived billions of years of evolution without major changes in structure. Collectively, the data here support a model in which ancestors of the large and small subunits originated and evolved independently of each other, with autonomous functionalities.

  9. Cases in which ancestral maximum likelihood will be confusingly misleading.

    Science.gov (United States)

    Handelman, Tomer; Chor, Benny

    2017-05-07

    Ancestral maximum likelihood (AML) is a phylogenetic tree reconstruction criteria that "lies between" maximum parsimony (MP) and maximum likelihood (ML). ML has long been known to be statistically consistent. On the other hand, Felsenstein (1978) showed that MP is statistically inconsistent, and even positively misleading: There are cases where the parsimony criteria, applied to data generated according to one tree topology, will be optimized on a different tree topology. The question of weather AML is statistically consistent or not has been open for a long time. Mossel et al. (2009) have shown that AML can "shrink" short tree edges, resulting in a star tree with no internal resolution, which yields a better AML score than the original (resolved) model. This result implies that AML is statistically inconsistent, but not that it is positively misleading, because the star tree is compatible with any other topology. We show that AML is confusingly misleading: For some simple, four taxa (resolved) tree, the ancestral likelihood optimization criteria is maximized on an incorrect (resolved) tree topology, as well as on a star tree (both with specific edge lengths), while the tree with the original, correct topology, has strictly lower ancestral likelihood. Interestingly, the two short edges in the incorrect, resolved tree topology are of length zero, and are not adjacent, so this resolved tree is in fact a simple path. While for MP, the underlying phenomenon can be described as long edge attraction, it turns out that here we have long edge repulsion. Copyright © 2017. Published by Elsevier Ltd.

  10. Choosing the best ancestral character state reconstruction method.

    Science.gov (United States)

    Royer-Carenzi, Manuela; Pontarotti, Pierre; Didier, Gilles

    2013-03-01

    Despite its intrinsic difficulty, ancestral character state reconstruction is an essential tool for testing evolutionary hypothesis. Two major classes of approaches to this question can be distinguished: parsimony- or likelihood-based approaches. We focus here on the second class of methods, more specifically on approaches based on continuous-time Markov modeling of character evolution. Among them, we consider the most-likely-ancestor reconstruction, the posterior-probability reconstruction, the likelihood-ratio method, and the Bayesian approach. We discuss and compare the above-mentioned methods over several phylogenetic trees, adding the maximum-parsimony method performance in the comparison. Under the assumption that the character evolves according a continuous-time Markov process, we compute and compare the expectations of success of each method for a broad range of model parameter values. Moreover, we show how the knowledge of the evolution model parameters allows to compute upper bounds of reconstruction performances, which are provided as references. The results of all these reconstruction methods are quite close one to another, and the expectations of success are not so far from their theoretical upper bounds. But the performance ranking heavily depends on the topology of the studied tree, on the ancestral node that is to be inferred and on the parameter values. Consequently, we propose a protocol providing for each parameter value the best method in terms of expectation of success, with regard to the phylogenetic tree and the ancestral node to infer. Copyright © 2012 Elsevier Inc. All rights reserved.

  11. The 12.1 ka Middle Toluca Pumice: A dacitic Plinian subplinian eruption of Nevado de Toluca in Central Mexico

    Science.gov (United States)

    Arce, J. L.; Cervantes, K. E.; Macías, J. L.; Mora, J. C.

    2005-10-01

    The Nevado de Toluca volcano erupted explosively approximately 12.1 ka ago, producing a Plinian-subplinian eruption that deposited the Middle Toluca Pumice (MTP). The MTP consists of white and gray juvenile pumice, gray dense juvenile lapilli, and red altered lithic lapilli. The pumice is dacitic (63.54-65.06 wt.% SiO 2) with phenocrysts of plagioclase > orthopyroxene > hornblende ± ilmenite and titanomagnetite, and biotite xenocrysts set in a groundmass of rhyolitic glass (70-71 wt.% SiO 2). The MTP has a dispersal axis to the ESE covering an area of 92 km 2, with a minimum volume of 1.8 km 3 (DRE). Stratigraphic relations, grain size, componentry, and vesicularity analyses suggest that the eruption occurred in five major phases: (1) an opening magmatic phase that generated a 20-km-high Plinian column dispersed to the SE; (2) a hydromagmatic explosion followed with the establishment of a subplinian eruptive column (18-19 km high) dispersed tephra to the SE and gradually waned; (3) hydromagmatic explosions emplaced dilute pyroclastic density currents followed by the formation of an eruptive column of unknown height; (4) immediately after, a new magmatic explosion established another eruptive column; and (5) the collapse of the latter column generated two pumiceous pyroclastic density currents that were fully dilute proximally, but transformed into two granular-fluid pyroclastic currents that traveled 19 km from the source.

  12. Buried palaeosols of the Nevado de Toluca: an alternative record of Late Quaternary environmental change in central Mexico

    Science.gov (United States)

    Sedov, Sergey; Solleiro-Rebolledo, Elizabeth; Gama-Castro, Jorge E.; Vallejo-Gómez, Ernestina; González-Velázquez, Arelia

    2001-05-01

    Buried palaeosols of central Mexico, not previously analysed from a palaeopedological standpoint, have helped to develop a reliable regional model of Late Quaternary climatic change. This paper focuses upon morphological and micromorphological properties, particle-size distribution, and extractable Fe, Al and Si of seven palaeosols (named PT1-PT7) in the vicinity of the Nevado de Toluca volcano. The characteristics of Andic Cambisol PT1, similar to those of modern soils in semi-arid environments, indicate a drier climate in the first half of the Holocene. Humic Andosols PT2-PT4 are analogous to modern volcanic soils of humid forest environments. They show evidence that a moist palaeoclimate prevailed during marine oxygen isotope stages (OIS) 2 and 3. Luvisols PT5 and PT6, which are assumed to have formed at the end of marine OIS 5 to marine OIS 4, also indicate humid conditions. We attribute the differences between Andosols PT2-PT4 and Luvisols PT5-PT7 to variations in the duration in the pedogenesis rather than to changes in palaeoclimate. Micromorphological features of Andosol to Luvisol transition confirm that these soils form an evolutionary sequence. Being for the most part consistent with lacustrine records, the palaeosol properties do not reflect the episodes of drier climate during the Last Glacial Maximum, however, as shown by diatom and palynological data from lake sediments. Mesoclimate variations and/or incompleteness of soil memory, reflecting mostly periods of humid pedogenesis, probably provide the reason for this disagreement.

  13. Diet of larval Ambystoma rivulare (Caudata: Ambystomatidae, a threatened salamander from the Volcán Nevado de Toluca, Mexico

    Directory of Open Access Journals (Sweden)

    Julio A. Lemos-Espinal

    2015-06-01

    Full Text Available Several species of salamander in the genus Ambystoma occur in the mountains surrounding Mexico City and are considered at risk of extinction. However, little is known about their ecology and natural history. The Toluca Stream Siredon (Ambystoma rivulare is classified as “Data Deficient” by the IUCN, and considered “Threatened” under Mexican law. From October 2013 to September 2014, we examined the diet of larval A. rivulare from a stream on the Volcán Nevado de Toluca in Mexico to provide insight into the suitability of the habitat to support this population of salamanders. Ostracods accounted for approximately 90% of all prey items consumed by larval A. rivulare. The number of ostracods found in stomachs increased with individual body size, but the proportion of ostracods in stomachs did not vary with body size. Nematodes were observed in approximately one third of the stomachs we examined. The diversity of prey in the diet of A. rivulare in the stream we studied is low and dominated by a single prey taxon, ostracods. Our results suggest that if environmental conditions in the stream change such that ostracods are negatively affected then the long-term persistence of this population of A. rivulare might be in jeopardy.

  14. La deformación en los bloques de techo y muro de los cabalgamientos de las unidades inferiores Nevado-Filabrides (Cordilleras Béticas, SE. España

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    González Lodeiro, F.

    1988-08-01

    Full Text Available In the Nevado-Filábride complex, in the Western sector of the Sierra de Filabres, three tectonically superimposed units can be distinguished. The internal structure of these units corresponds 10 large folds with development of subtantial overturned limbs. This internal structure has been produced by three important deformation phases, which gave rise to more or less penetrative minor structures. The first deformation phase DI gives rise to a slaty cleavage and wouId generate great overtumed folds. The second deformation phase D, gives rise to ductil shear zones with aplanar-linear fabric, and ends up with fragil thrusts which superimposed the different units. The third deformation phase generates South vergent folds that affect all the previous structures. Geometric relations between thrust surfaces and foliation or bedding between the hanging and footwall show the existence of ramps and flats with respect to hanging and footwalls. In adittion to this, there is a considerable contrast with regard to the value and nature of the strain as shown by the rock volumes superimposed by the thrust surfaces, with footwalls rocks less deformed than hanging wall rocks. These thrusts start under sinmetamorphic conditions with deformation caused by ductile and heterogeneous shear and end up in fragile conditions accompanied by strong metamorphic retrogradation.En el complejo Nevado-Filábride, en el sector occidental de la Sierra de Filabres, se distinguen tres unidades superpuestas tectónicamente. La estructura interna de las unidades corresponde a grandes pliegues con desarrollo de flancos inversos importantes. Esta estructura interna se debe a la actuación de tres importantes fases de deformación, que originan estructuras menores más o menos penetrativas. Las primera fase de deformación D1 genera un «slaty c1eavage» S1 y podría dar lugar a grandes pliegues tumbados. La segunda fase de deformación genera grandes zonas de cizalla dúctil con

  15. Visual system evolution and the nature of the ancestral snake.

    Science.gov (United States)

    Simões, B F; Sampaio, F L; Jared, C; Antoniazzi, M M; Loew, E R; Bowmaker, J K; Rodriguez, A; Hart, N S; Hunt, D M; Partridge, J C; Gower, D J

    2015-07-01

    The dominant hypothesis for the evolutionary origin of snakes from 'lizards' (non-snake squamates) is that stem snakes acquired many snake features while passing through a profound burrowing (fossorial) phase. To investigate this, we examined the visual pigments and their encoding opsin genes in a range of squamate reptiles, focusing on fossorial lizards and snakes. We sequenced opsin transcripts isolated from retinal cDNA and used microspectrophotometry to measure directly the spectral absorbance of the photoreceptor visual pigments in a subset of samples. In snakes, but not lizards, dedicated fossoriality (as in Scolecophidia and the alethinophidian Anilius scytale) corresponds with loss of all visual opsins other than RH1 (λmax 490-497 nm); all other snakes (including less dedicated burrowers) also have functional sws1 and lws opsin genes. In contrast, the retinas of all lizards sampled, even highly fossorial amphisbaenians with reduced eyes, express functional lws, sws1, sws2 and rh1 genes, and most also express rh2 (i.e. they express all five of the visual opsin genes present in the ancestral vertebrate). Our evidence of visual pigment complements suggests that the visual system of stem snakes was partly reduced, with two (RH2 and SWS2) of the ancestral vertebrate visual pigments being eliminated, but that this did not extend to the extreme additional loss of SWS1 and LWS that subsequently occurred (probably independently) in highly fossorial extant scolecophidians and A. scytale. We therefore consider it unlikely that the ancestral snake was as fossorial as extant scolecophidians, whether or not the latter are para- or monophyletic. © 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology.

  16. Glacier melting during lava dome growth at Nevado de Toluca volcano (Mexico): Evidences of a major threat before main eruptive phases at ice-caped volcanoes

    Science.gov (United States)

    Capra, L.; Roverato, M.; Groppelli, G.; Caballero, L.; Sulpizio, R.; Norini, G.

    2015-03-01

    Nevado de Toluca volcano is one of the largest stratovolcanoes in the Trans-Mexican Volcanic Belt. During Late Pleistocene its activity was characterized by large dome growth and subsequent collapse emplacing large block and ash flow deposits, intercalated by Plinian eruptions. Morphological and paleoclimate studies at Nevado de Toluca and the surrounding area evidenced that the volcano was affected by extensive glaciation during Late Pleistocene and Holocene. During the older recognized glacial period (27-60 ka, MIS 3), the glacier was disturbed by the intense magmatic and hydrothermal activity related to two dome extrusion episodes (at 37 ka and 28 ka). Glacier reconstruction indicates maximum ice thickness of 90 m along main valleys, as at the Cano ravines, the major glacial valley on the northern slope of the volcano. Along this ravine, both 37 and 28 ka block-and-ash deposits are exposed, and they directly overlay a fluviatile sequence, up to 40 m-thick, which 14C ages clearly indicate that their emplacement occurred just before the dome collapsed. These evidences point to a clear interaction between the growing dome and its hydrothermal system with the glacier. During dome growth, a large amount of melting water was released along major glacial valleys forming thick fluvioglacial sequences that were subsequently covered by the block-and-ash flow deposits generated by the collapse of the growing dome. Even though this scenario is no longer possible at the Nevado de Toluca volcano, the data presented here indicate that special attention should be paid to the possible inundation areas from fluviatile/lahar activity prior to the main magmatic eruption at ice-capped volcanoes.

  17. Comments on cladocerans of crater lakes of the Nevado de Toluca Volcano (Central Mexico), with the description of a new species, Alona manueli sp. nov.

    Science.gov (United States)

    Sinev, Artem Y; Zawisza, Edyta

    2013-01-01

    Cladoceran communities of two lakes of Nevado de Toluca Volcano, Central Mexico, were studied. A new species of Aloninae, Alona manueli sp. nov., is described. It was previously confused with Palearctic Alona intermedia Sars, 1862, but clearly differs from it in the morphology of postabdomen, head shield and head pores, and thoracic limbs. Position of Alona manueli sp. nov. within the genus is unclear, it did not belong to any species-group within Alona s. lato. Other species recorded in the studied lakes are Alona ossiani Sinev, 1998, Alonella pulchella Herrick, 1884, Chydorus belonging to sphaericus-group, Eurycercus longirostris Hann, 1982 and Pleuroxus cf. denticulatus Birge, 1879.

  18. Tectonic evolution of the central-eastern sector of Trans Mexican Volcanic Belt and its influence on the eruptive history of the Nevado de Toluca volcano (Mexico)

    Science.gov (United States)

    Bellotti, F.; Capra, L.; Groppelli, G.; Norini, G.

    2006-11-01

    The Nevado de Toluca is an andesitic to dacitic stratovolcano of Late Pliocene-Holocene age located within the central and eastern sectors of the Trans Mexican Volcanic Belt. Morphostructural analysis, aerial photograph and satellite image interpretation, structural analysis and geological fieldwork were methods used to investigate the relationship between the evolution of the volcano and the tectonic framework of its basement. The study revealed that the area of Nevado de Toluca is affected by three main fault systems that intersect close to the volcanic edifice. These are from oldest to youngest, the Taxco-Querétaro, San Antonio and Tenango fault systems. The NNW-SSE Taxco-Querétaro fault system was active in the area since Early Miocene, and is characterized by right-lateral transtensive movement. Its reactivation during Early to Middle Pleistocene was responsible for the emplacement of andesitic to dacitic lava flows and domes of La Cieneguilla Supersynthem. The NE-SW San Antonio fault system was active during Late Pliocene, before the reactivation of the Taxco-Querétaro fault system, and is characterized by extensional left-lateral oblique-slip kinematics. The youngest is the E-W Tenango fault system that has been active since Late Pleistocene. This fault system is characterized by transtensive left-lateral strike-slip movement, and partly coeval with the youngest eruptive phase, the Nevado Supersynthem, which formed the present summit cone of the Nevado de Toluca volcano. The stress re-orientation from the Taxco-Querétaro to the Tenango fault system during Late Pleistocene is responsible for the ˜ 1 Ma hiatus in the magmatic activity between 1.15 Ma and 42 ka. After this period of repose, the eruptive style drastically changed from effusive to explosive with the emission of dacitic products. The methodology presented here furnish new data that can be used to better assess the complex structural evolution of this sector of the Trans Mexican Volcanic Belt

  19. Agricultura y vida en el páramo: una mirada desde la vereda El Bosque (Parque Nacional Natural de Los Nevados)

    OpenAIRE

    Avellaneda-Torres, Lizeth Manuela; Torres Rojas, Esperanza; León Sicard, Tomás Enrique

    2014-01-01

    Se analizaron las prácticas agrícolas y condiciones de vida de la comunidad de la vereda El Bosque en el Parque Nacional los Nevados, Colombia. Se aplicaron varias herramientas como la observación participante, entrevistas semiestructuradas, líneas de tiempo, mapas por vereda, por finca, calendarios agrícolas, relojes de actividades por género y cuestionarios estructurados. Se determinó que el cultivo de papa y la ganadería se desarrollan como estrategia de supervivencia y herencia cultural p...

  20. Plan de ordenación y manejo de la cuenca del río Campoalegre : fase prospectiva

    OpenAIRE

    Duque Escobar, Gonzalo; Ortiz Ortiz, Doralice; Riveros Laserna, Rosa Liliana; Dunoyer Mejía, Mónica

    2008-01-01

    La cuenca del río Campoalegre es un territorio biodiverso que comparte jurisdicción en los departamentos de Caldas y Risaralda, en donde la responsabilidad de su planeación y ordenamiento está cargo de la Comisión Conjunta, conformada por las Corporaciones Autónomas Regionales Corpocaldas y CARDER, y la Unidad Administrativa Especial de Parques Nacionales Naturales UAESPNN- Dirección Territorial Noroccidental con la Oficina regional del Parque Nacional Natural los Nevados PNNN. En el presente...

  1. Evaluación hidrológica de la subcuenca alta del río Chinchiná

    OpenAIRE

    Franco Villegas, Ana María

    2001-01-01

    La subcuenca alta del Río Chinchiná es una de las de mayor importancia en el Departamento de Caldas, por pertenecer a una región que se define como ecosistema estratégico productor de recursos naturales, como es el Parque Nacional Natural de Los Nevados, y además por contribuir a soportar la mayor población a escala regional establecida sobre la Cuenca del Río Chinchiná. El presente estudio incluye un aporte al conocimiento de las características físicas territoriales de la región, y en d...

  2. How Do Ancestral Traits Shape Family Trees Over Generations?

    Science.gov (United States)

    Fu, Siwei; Dong, Hao; Cui, Weiwei; Zhao, Jian; Qu, Huamin

    2018-01-01

    Whether and how does the structure of family trees differ by ancestral traits over generations? This is a fundamental question regarding the structural heterogeneity of family trees for the multi-generational transmission research. However, previous work mostly focuses on parent-child scenarios due to the lack of proper tools to handle the complexity of extending the research to multi-generational processes. Through an iterative design study with social scientists and historians, we develop TreeEvo that assists users to generate and test empirical hypotheses for multi-generational research. TreeEvo summarizes and organizes family trees by structural features in a dynamic manner based on a traditional Sankey diagram. A pixel-based technique is further proposed to compactly encode trees with complex structures in each Sankey Node. Detailed information of trees is accessible through a space-efficient visualization with semantic zooming. Moreover, TreeEvo embeds Multinomial Logit Model (MLM) to examine statistical associations between tree structure and ancestral traits. We demonstrate the effectiveness and usefulness of TreeEvo through an in-depth case-study with domain experts using a real-world dataset (containing 54,128 family trees of 126,196 individuals).

  3. Using Resurrected Ancestral Proviral Proteins to Engineer Virus Resistance.

    Science.gov (United States)

    Delgado, Asunción; Arco, Rocio; Ibarra-Molero, Beatriz; Sanchez-Ruiz, Jose M

    2017-05-09

    Proviral factors are host proteins hijacked by viruses for processes essential for virus propagation such as cellular entry and replication. Pathogens and their hosts co-evolve. It follows that replacing a proviral factor with a functional ancestral form of the same protein could prevent viral propagation without fatally compromising organismal fitness. Here, we provide proof of concept of this notion. Thioredoxins serve as general oxidoreductases in all known cells. We report that several laboratory resurrections of Precambrian thioredoxins display substantial levels of functionality within Escherichia coli. Unlike E. coli thioredoxin, however, these ancestral thioredoxins are not efficiently recruited by the bacteriophage T7 for its replisome and therefore prevent phage propagation in E. coli. These results suggest an approach to the engineering of virus resistance. Diseases caused by viruses may have a devastating effect in agriculture. We discuss how the suggested approach could be applied to the engineering of plant virus resistance. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

  4. Reconstruction of ancestral RNA sequences under multiple structural constraints

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    Olivier Tremblay-Savard

    2016-11-01

    Full Text Available Abstract Background Secondary structures form the scaffold of multiple sequence alignment of non-coding RNA (ncRNA families. An accurate reconstruction of ancestral ncRNAs must use this structural signal. However, the inference of ancestors of a single ncRNA family with a single consensus structure may bias the results towards sequences with high affinity to this structure, which are far from the true ancestors. Methods In this paper, we introduce achARNement, a maximum parsimony approach that, given two alignments of homologous ncRNA families with consensus secondary structures and a phylogenetic tree, simultaneously calculates ancestral RNA sequences for these two families. Results We test our methodology on simulated data sets, and show that achARNement outperforms classical maximum parsimony approaches in terms of accuracy, but also reduces by several orders of magnitude the number of candidate sequences. To conclude this study, we apply our algorithms on the Glm clan and the FinP-traJ clan from the Rfam database. Conclusions Our results show that our methods reconstruct small sets of high-quality candidate ancestors with better agreement to the two target structures than with classical approaches. Our program is freely available at: http://csb.cs.mcgill.ca/acharnement .

  5. Reconstruction of ancestral RNA sequences under multiple structural constraints.

    Science.gov (United States)

    Tremblay-Savard, Olivier; Reinharz, Vladimir; Waldispühl, Jérôme

    2016-11-11

    Secondary structures form the scaffold of multiple sequence alignment of non-coding RNA (ncRNA) families. An accurate reconstruction of ancestral ncRNAs must use this structural signal. However, the inference of ancestors of a single ncRNA family with a single consensus structure may bias the results towards sequences with high affinity to this structure, which are far from the true ancestors. In this paper, we introduce achARNement, a maximum parsimony approach that, given two alignments of homologous ncRNA families with consensus secondary structures and a phylogenetic tree, simultaneously calculates ancestral RNA sequences for these two families. We test our methodology on simulated data sets, and show that achARNement outperforms classical maximum parsimony approaches in terms of accuracy, but also reduces by several orders of magnitude the number of candidate sequences. To conclude this study, we apply our algorithms on the Glm clan and the FinP-traJ clan from the Rfam database. Our results show that our methods reconstruct small sets of high-quality candidate ancestors with better agreement to the two target structures than with classical approaches. Our program is freely available at: http://csb.cs.mcgill.ca/acharnement .

  6. Geostatistics and multivariate analysis as a tool to characterize volcaniclastic deposits: Application to Nevado de Toluca volcano, Mexico

    Science.gov (United States)

    Bellotti, F.; Capra, L.; Sarocchi, D.; D'Antonio, M.

    2010-03-01

    Grain size analysis of volcaniclastic deposits is mainly used to study flow transport and depositional processes, in most cases by comparing some statistical parameters and how they change with distance from the source. In this work the geospatial and multivariate analyses are presented as a strong adaptable geostatistical tool applied to volcaniclastic deposits in order to provide an effective and relatively simple methodology for texture description, deposit discrimination and interpretation of depositional processes. We choose the case of Nevado de Toluca volcano (Mexico) due to existing knowledge of its geological evolution, stratigraphic succession and spatial distribution of volcaniclastic units. Grain size analyses and frequency distribution curves have been carried out to characterize and compare the 28-ka block-and-ash flow deposit associated to a dome destruction episode, and the El Morral debris avalanche deposit originated from the collapse of the south-eastern sector of the volcano. The geostatistical interpolation of sedimentological data allows to realize bidimensional maps draped over the volcano topography, showing the granulometric distribution, sorting and fine material concentration into the whole deposit with respect to topographic changes. In this way, it is possible to analyze a continuous surface of the grain size distribution of volcaniclastic deposits and better understand flow transport processes. The application of multivariate statistic analysis (discriminant function) indicates that this methodology could be useful in discriminating deposits with different origin or different depositional lithofacies within the same deposit. The proposed methodology could be an interesting approach to sustain more classical analysis of volcaniclastic deposits, especially where a clear field classification appears problematic because of a homogeneous texture of the deposits or their scarce and discontinuous outcrops. Our study is an example of the

  7. The 13 ka Pelée-Type Dome Collapse at Nevado de Toluca Volcano, México.

    Science.gov (United States)

    D'Antonio, M.; Capra, L.; Sarocchi, D.; Bellotti, F.

    2007-05-01

    The Nevado de Toluca is an active volcano located in the central sector of the Trans-Mexican Volcanic Belt, 80 km southwest of Mexico City. Activity at this andesitic to dacitic stratovolcano began ca. 2.6 Ma ago. During the last 42 ka, the volcano has been characterized by different eruptive styles, including five dome collapses dated at 37, 32, 28, 26, and 13 ka and five Plinian eruptions at 42 ka, 36 ka, 21.7 ka, 12.1 ka and 10.5 ka. The 13 ka dome collapse is the youngest event of this type, and originated a 0.11 km3 block-and-ash flow deposit on the north-eastern sector of the volcano. The deposit consists of two facies: channel-like, 10 m thick, monolitologic, that is composed of up to five units, with decimetric dacitic clasts set in a sandy matrix; and a lateral facies that consists of a gray, sandy horizon, up to 4 m thick, with a 30 cm-thick surge layer at the base. The main component is a dacitic lava, with different degree of vesciculation, with mineral association of Pl-Hbl-Opx. Plagioclases show two different textures: in equilibrium, with normal zoning (core = An37-64.3, rim = An30.7-45.8) or with spongy cellular texture with inverse zoning (core = An38-43.5, rim = An45-51.2). Hornblende is normally light green, barren of oxidation. The rock matrix contains up to 53 perc. of glass with abundant microlites, indicating over-pressure on the crystallizing magma and a rapid expulsion. All these stratigraphic and petrographic features indicate that the dome was quickly extruded on the summit of the volcano, probably triggered by a magma mixing process, and its collapse was accompanied by an explosive component, being classified as a Pelée-type event.

  8. Resurrecting ancestral genes in bacteria to interpret ancient biosignatures

    Science.gov (United States)

    Kacar, Betul; Guy, Lionel; Smith, Eric; Baross, John

    2017-11-01

    Two datasets, the geologic record and the genetic content of extant organisms, provide complementary insights into the history of how key molecular components have shaped or driven global environmental and macroevolutionary trends. Changes in global physico-chemical modes over time are thought to be a consistent feature of this relationship between Earth and life, as life is thought to have been optimizing protein functions for the entirety of its approximately 3.8 billion years of history on the Earth. Organismal survival depends on how well critical genetic and metabolic components can adapt to their environments, reflecting an ability to optimize efficiently to changing conditions. The geologic record provides an array of biologically independent indicators of macroscale atmospheric and oceanic composition, but provides little in the way of the exact behaviour of the molecular components that influenced the compositions of these reservoirs. By reconstructing sequences of proteins that might have been present in ancient organisms, we can downselect to a subset of possible sequences that may have been optimized to these ancient environmental conditions. How can one use modern life to reconstruct ancestral behaviours? Configurations of ancient sequences can be inferred from the diversity of extant sequences, and then resurrected in the laboratory to ascertain their biochemical attributes. One way to augment sequence-based, single-gene methods to obtain a richer and more reliable picture of the deep past, is to resurrect inferred ancestral protein sequences in living organisms, where their phenotypes can be exposed in a complex molecular-systems context, and then to link consequences of those phenotypes to biosignatures that were preserved in the independent historical repository of the geological record. As a first step beyond single-molecule reconstruction to the study of functional molecular systems, we present here the ancestral sequence reconstruction of the

  9. Morphological analysis of Nevado de Toluca volcano (Mexico): new insights into the structure and evolution of an andesitic to dacitic stratovolcano

    Science.gov (United States)

    Norini, Gianluca; Groppelli, Gianluca; Capra, Lucia; De Beni, Emanuela

    2004-09-01

    We present a morphological analysis of Nevado de Toluca volcano located 80 km WSW of Mexico City based on digital elevation model study, where slope and aspect maps have been generated and analysed. Aerial photograph and satellite image observations improve the morphological analysis. The synoptic view which is offered by this analysis allowed for recognition and localization of the main volcanic and tectonic features of the area. On the basis of digital elevation model value distribution and surface textures, five morphological domains were defined. The most interesting domain, south of the crater, reflects the occurrence of an ancient complex volcano distinct from the adjacent areas. Interaction between the volcanic and volcano-tectonic evolution and the basement produced the other domains. Single volcanic edifices, like lava domes and scoria cones, and eruptive fractures were recognized. Finally, flank collapse scarps opened to the east and to the north were identified and four relevant morphostructural lineaments and their possible role in the Nevado de Toluca geological and structural evolution are discussed.

  10. Basic features of the ancestral chordate brain: a protochordate perspective.

    Science.gov (United States)

    Lacalli, Thurston C

    2008-03-18

    Basic features of the anterior nerve cord in amphioxus larvae are summarized to highlight its essential similarity with the vertebrate brain. Except for a pineal homolog, the amphioxus brain consists of a much simplified version of the ventral brainstem, including a region probably homologous with the hypothalamus, and a locomotory control center roughly comparable to the vertebrate tegmentum and reticulospinal system. Amphioxus has direct pathways for activating its locomotory circuits in response to mechanical stimuli via epithelial sensory cells, but this response is evidently modulated by inputs from diverse sensory-type cells located in the putative hypothalamic homolog, and from the lamellar body, the pineal homolog. This implies that a basic function of the amphioxus brain is to switch between locomotory activities, of which there are several, and the principal non-locomotory one, namely feeding. A similar involvement in switching between behavioral modes may thus have been a core brain function in ancestral chordates. Currently, however, incomplete knowledge of the physiology and behavior of amphioxus limits how effectively it can be used as an evolutionary model. Eye evolution is briefly discussed to illustrate how a better understanding of living forms can inform the evolutionary debate. An account of recent data on dorsoventral inversion is also included, as this bears directly on the question of where the chordate brain originated in relation to other structures. It now appears likely that key components of the ancestral brain were originally located around the mouth. A secondary repositioning of the latter would therefore have been required before a unitary brain could be assembled and internalized. This association between the mouth and the evolving brain reinforces the idea of a fundamental early connection between core brain structures and the control of feeding activity.

  11. PRÁCTICAS SOSTENIBLES BASADAS EN EL CONOCIMIENTO ANCESTRAL Y LA TECNOLOGÍA. APLICACIÓN EN EL CULTIVO DE MAÍZ

    Directory of Open Access Journals (Sweden)

    Tony JinsopYangüés Pappa

    2012-11-01

    Full Text Available Este trabajo fue desarrollado en la microcuenca Membrillo del cantón Bolívar, provincia de Manabí, su objetivo fue incrementar la productividad del cultivo de maíz aplicando prácticas sostenibles basadas en el conocimiento ancestral y la tecnología. Para lograr el objetivo propuesto se realizó un Diagnóstico Rural Participativo (DRP y se aplicaron las Metodologías de Escuelas de Aprendizaje (ERAs. Entre los principales resultados obtenidos se destacan el incremento de la productividad promedio del cultivo del maíz a 120 qq/ha con prácticas alternativas sostenibles basadas en el conocimiento ancestral y la tecnología en las comunidades donde se aplicaron las experiencias, alcanzando estas mayores ingresos que satisfacen las necesidades de los productores y consecuentemente se logró reducir la presión hacia los bosques por la producción intensiva alcanzada. Se capacitaron a los agricultores involucrados en técnicas de elaboración de bioinsumos que se utilizaron para la producción de maíz, alternativas para el manejo técnico sostenible y amigable con el ambiente en este cultivo. También se demostró que las prácticas implementadas en el desarrollo de este trabajo contribuyen al desarrollo sostenible de la Microcuenca Membrillo.

  12. Estimation of the ancestral effective population sizes of African great apes under different selection regimes.

    Science.gov (United States)

    Schrago, Carlos G

    2014-08-01

    Reliable estimates of ancestral effective population sizes are necessary to unveil the population-level phenomena that shaped the phylogeny and molecular evolution of the African great apes. Although several methods have previously been applied to infer ancestral effective population sizes, an analysis of the influence of the selective regime on the estimates of ancestral demography has not been thoroughly conducted. In this study, three independent data sets under different selective regimes were used were composed to tackle this issue. The results showed that selection had a significant impact on the estimates of ancestral effective population sizes of the African great apes. The inference of the ancestral demography of African great apes was affected by the selection regime. The effects, however, were not homogeneous along the ancestral populations of great apes. The effective population size of the ancestor of humans and chimpanzees was more impacted by the selection regime when compared to the same parameter in the ancestor of humans, chimpanzees and gorillas. Because the selection regime influenced the estimates of ancestral effective population size, it is reasonable to assume that a portion of the discrepancy found in previous studies that inferred the ancestral effective population size may be attributable to the differential action of selection on the genes sampled.

  13. Allatotropin: An Ancestral Myotropic Neuropeptide Involved in Feeding

    Science.gov (United States)

    Alzugaray, María Eugenia; Adami, Mariana Laura; Diambra, Luis Anibal; Hernandez-Martinez, Salvador; Damborenea, Cristina; Noriega, Fernando Gabriel; Ronderos, Jorge Rafael

    2013-01-01

    Background Cell-cell interactions are a basic principle for the organization of tissues and organs allowing them to perform integrated functions and to organize themselves spatially and temporally. Peptidic molecules secreted by neurons and epithelial cells play fundamental roles in cell-cell interactions, acting as local neuromodulators, neurohormones, as well as endocrine and paracrine messengers. Allatotropin (AT) is a neuropeptide originally described as a regulator of Juvenile Hormone synthesis, which plays multiple neural, endocrine and myoactive roles in insects and other organisms. Methods A combination of immunohistochemistry using AT-antibodies and AT-Qdot nanocrystal conjugates was used to identify immunoreactive nerve cells containing the peptide and epithelial-muscular cells targeted by AT in Hydra plagiodesmica. Physiological assays using AT and AT- antibodies revealed that while AT stimulated the extrusion of the hypostome in a dose-response fashion in starved hydroids, the activity of hypostome in hydroids challenged with food was blocked by treatments with different doses of AT-antibodies. Conclusions AT antibodies immunolabeled nerve cells in the stalk, pedal disc, tentacles and hypostome. AT-Qdot conjugates recognized epithelial-muscular cell in the same tissues, suggesting the existence of anatomical and functional relationships between these two cell populations. Physiological assays indicated that the AT-like peptide is facilitating food ingestion. Significance Immunochemical, physiological and bioinformatics evidence advocates that AT is an ancestral neuropeptide involved in myoregulatory activities associated with meal ingestion and digestion. PMID:24143240

  14. Modeling X-linked ancestral origins in multiparental populations.

    Science.gov (United States)

    Zheng, Chaozhi

    2015-03-04

    The models for the mosaic structure of an individual's genome from multiparental populations have been developed primarily for autosomes, whereas X chromosomes receive very little attention. In this paper, we extend our previous approach to model ancestral origin processes along two X chromosomes in a mapping population, which is necessary for developing hidden Markov models in the reconstruction of ancestry blocks for X-linked quantitative trait locus mapping. The model accounts for the joint recombination pattern, the asymmetry between maternally and paternally derived X chromosomes, and the finiteness of population size. The model can be applied to various mapping populations such as the advanced intercross lines (AIL), the Collaborative Cross (CC), the heterogeneous stock (HS), the Diversity Outcross (DO), and the Drosophila synthetic population resource (DSPR). We further derive the map expansion, density (per Morgan) of recombination breakpoints, in advanced intercross populations with L inbred founders under the limit of an infinitely large population size. The analytic results show that for X chromosomes the genetic map expands linearly at a rate (per generation) of two-thirds times 1 - 10/(9L) for the AIL, and at a rate of two-thirds times 1 - 1/L for the DO and the HS, whereas for autosomes the map expands at a rate of 1 - 1/L for the AIL, the DO, and the HS. Copyright © 2015 Zheng.

  15. Allatotropin: an ancestral myotropic neuropeptide involved in feeding.

    Directory of Open Access Journals (Sweden)

    María Eugenia Alzugaray

    Full Text Available Cell-cell interactions are a basic principle for the organization of tissues and organs allowing them to perform integrated functions and to organize themselves spatially and temporally. Peptidic molecules secreted by neurons and epithelial cells play fundamental roles in cell-cell interactions, acting as local neuromodulators, neurohormones, as well as endocrine and paracrine messengers. Allatotropin (AT is a neuropeptide originally described as a regulator of Juvenile Hormone synthesis, which plays multiple neural, endocrine and myoactive roles in insects and other organisms.A combination of immunohistochemistry using AT-antibodies and AT-Qdot nanocrystal conjugates was used to identify immunoreactive nerve cells containing the peptide and epithelial-muscular cells targeted by AT in Hydra plagiodesmica. Physiological assays using AT and AT- antibodies revealed that while AT stimulated the extrusion of the hypostome in a dose-response fashion in starved hydroids, the activity of hypostome in hydroids challenged with food was blocked by treatments with different doses of AT-antibodies.AT antibodies immunolabeled nerve cells in the stalk, pedal disc, tentacles and hypostome. AT-Qdot conjugates recognized epithelial-muscular cell in the same tissues, suggesting the existence of anatomical and functional relationships between these two cell populations. Physiological assays indicated that the AT-like peptide is facilitating food ingestion.Immunochemical, physiological and bioinformatics evidence advocates that AT is an ancestral neuropeptide involved in myoregulatory activities associated with meal ingestion and digestion.

  16. Possible rules for the ancestral origin of Hox gene collinearity.

    Science.gov (United States)

    Gaunt, Stephen J; Gaunt, Alexander L

    2016-12-07

    The Hox gene cluster is believed to have formed from a single ProtoHox gene by repeated cycles of the following events: tandem gene duplication, mutation to generate a new expression boundary along the embryonic axis, and acquisition of a new Hox patterning function. The Hox cluster in Bilateria evolved in compliance with the so-called collinearity rule. That is, the order of the genes along the chromosome corresponds with the order of their embryonic expression domains along the head-tail axis. Gaunt (2015) suggested that collinearity may have arisen as a mechanism to minimise the incidence of boundaries between active and inactive genes within the Hox cluster. We now attempt to clarify the model by presenting it in the form of three rules: 1) no two Hox genes may persist in the same cluster with the same anterior boundary of activity in the same tissue; 2) an inactive Hox gene must not be flanked by two active Hox genes; 3) an active Hox gene must not be flanked by two inactive genes. We provide evidence and illustrative computer simulations to show that these rules, which can apply only to partially overlapping patterns of Hox activity, may account for the ancestral origin of Hox gene collinearity. Copyright © 2016 Elsevier Ltd. All rights reserved.

  17. Time-Dependent-Asymmetric-Linear-Parsimonious Ancestral State Reconstruction.

    Science.gov (United States)

    Didier, Gilles

    2017-10-01

    The time-dependent-asymmetric-linear parsimony is an ancestral state reconstruction method which extends the standard linear parsimony (a.k.a. Wagner parsimony) approach by taking into account both branch lengths and asymmetric evolutionary costs for reconstructing quantitative characters (asymmetric costs amount to assuming an evolutionary trend toward the direction with the lowest cost). A formal study of the influence of the asymmetry parameter shows that the time-dependent-asymmetric-linear parsimony infers states which are all taken among the known states, except for some degenerate cases corresponding to special values of the asymmetry parameter. This remarkable property holds in particular for the Wagner parsimony. This study leads to a polynomial algorithm which determines, and provides a compact representation of, the parametric reconstruction of a phylogenetic tree, that is for all the unknown nodes, the set of all the possible reconstructed states associated with the asymmetry parameters leading to them. The time-dependent-asymmetric-linear parsimony is finally illustrated with the parametric reconstruction of the body size of cetaceans.

  18. Ancestral fertility in "Ponciá Vivêncio"

    Directory of Open Access Journals (Sweden)

    Ana Ximenes Gomes de Oliveira

    2015-12-01

    Full Text Available The literature of Conceição Evaristo presents in its characters a rescue and a sort of re­writing of Brazilian historical records, mainly experienced by the black skinned people. Therefore, a literature work as such goes beyond the intentions and canonical places to be destined, because it is a fictional production that acts interposing the discourse of literary authoritarianism. Conceição Evaristo is an author who symbolizes this multiplicity of inherited experiences of the slavery period and post-colonialism in Brazil. Whence, the purpose of this study is to explore the reflections on the historical memory in the novel Ponciá Vicêncio, as well as the issues of ancestrally and how it is con­figured in the maternity of two feminine characters in the novel: the protagonist Ponciá Vicêncio and the wise Nêngua Kainda. Therefore, the considerations of Verena Alberti (2004 on memory and orality; and Reginaldo Prandi (2001 on the representation of mythology of deities in this narrative, it will be used as theoretical framework.

  19. Evaluación de los bosques templados en México: una aplicación en el Parque Nacional Nevado de Toluca

    Directory of Open Access Journals (Sweden)

    Lourdes Villers Ruíz

    1998-01-01

    Full Text Available Based on In a photonterpretation and fieldwork analysis a méthodologie procedure to characterize the temperate forests in Mexico is proposed The methodology was applied in the Nevado de Toluca National Park, Three forest communities were determined; a Pinus hartwegii. b Abies religiosa and ci mixed: Abies religiosa, Alnus jorullensis. P pseudostrobus and P. hartwegii. For each community three types of covering density were delineated. Remarkable differences between number of trees, height and cover, with regard to the different density types and the three forest types were found. From dominant species analysis, subdominants species and covering percentage of the fieldwork sampling sites suggested more richness in the Abies and mixed forests than in the Pmus forests. Several impact levels caused by human activities exist: logging (mainly in Abies forest, in Pinus forests deliberately fires for grass-induced. The presence of Lipmus montanus and Penstemon gentienoides can be used as disturbed indicators.

  20. Characterization of Reconstructed Ancestral Proteins Suggests a Change in Temperature of the Ancient Biosphere.

    Science.gov (United States)

    Akanuma, Satoshi

    2017-08-06

    Understanding the evolution of ancestral life, and especially the ability of some organisms to flourish in the variable environments experienced in Earth's early biosphere, requires knowledge of the characteristics and the environment of these ancestral organisms. Information about early life and environmental conditions has been obtained from fossil records and geological surveys. Recent advances in phylogenetic analysis, and an increasing number of protein sequences available in public databases, have made it possible to infer ancestral protein sequences possessed by ancient organisms. However, the in silico studies that assess the ancestral base content of ribosomal RNAs, the frequency of each amino acid in ancestral proteins, and estimate the environmental temperatures of ancient organisms, show conflicting results. The characterization of ancestral proteins reconstructed in vitro suggests that ancient organisms had very thermally stable proteins, and therefore were thermophilic or hyperthermophilic. Experimental data supports the idea that only thermophilic ancestors survived the catastrophic increase in temperature of the biosphere that was likely associated with meteorite impacts during the early history of Earth. In addition, by expanding the timescale and including more ancestral proteins for reconstruction, it appears as though the Earth's surface temperature gradually decreased over time, from Archean to present.

  1. The 21,700 yr b.p. Lower Toluca Pumice Plinian Eruption of Nevado de Toluca Volcano (Mexico): Evidences of Magma Mixing Process as Triggering Mechanism.

    Science.gov (United States)

    Capra, L.; Arce, J.; Macias, J.

    2006-05-01

    Approximately 21,700 yr B.P., after a period of quiescence of 4800 yr, Nevado de Toluca volcano erupted, producing the Lower Toluca Pumice deposit. The activity generated a 24-km-high Plinian column that lasted ~11 h and dispersed 2.3 km3 (0.8 km3 dense rock equivalent) of tephra toward the NE, blanketing the Lerma basin, an area occupied today by the city of Toluca, with up to 5 cm of ash. Subsequent eruptive pulses were sub-Plinian in style, accompanied by phreatomagmatic explosions that emplaced surge deposits. Finally, the column collapsed toward the NE with the emplacement of a pumice flow deposit. The high vesicularity of the pumice from the basal Plinian layer, up to 83% by volume, indicates that exsolution was dominantly magmatic, and that pressurization of the magma chamber was probably due to a magma mixing process. Evidence for this includes the compositional range of juvenile products (from 55 to 65 wt% SiO2), as well as the presence of two types of plagioclase, one in equilibrium and the other one with disequilibrium textures and reverse zoning. This suggests input of an andesitic liquid into the dacitic magma chamber. Based on the eruptive record, the most likely future eruptive activity at Nevado de Toluca volcano will be Plinian. Although quiet for more than 3250 yr, Plinian activity could occur after a long period of quiescence, and it could represent a hazard for the entire Toluca basin, where more than one million people live today.

  2. "I Ulu No Ka Lala I Ke Kumu", The Branches Grow Because of the Trunk: Ancestral Knowledge as Refusal

    Science.gov (United States)

    Chandler, Kapua L.

    2018-01-01

    This paper will discuss the ways that Native Hawaiian scholars are engaging in innovative strategies that incorporate ancestral knowledges into the academy. Ancestral knowledges are highly valued as Indigenous communities strive to pass on such wisdom and lessons from generation to generation. Ancestral knowledges are all around us no matter where…

  3. Genome-wide inference of ancestral recombination graphs.

    Directory of Open Access Journals (Sweden)

    Matthew D Rasmussen

    Full Text Available The complex correlation structure of a collection of orthologous DNA sequences is uniquely captured by the "ancestral recombination graph" (ARG, a complete record of coalescence and recombination events in the history of the sample. However, existing methods for ARG inference are computationally intensive, highly approximate, or limited to small numbers of sequences, and, as a consequence, explicit ARG inference is rarely used in applied population genomics. Here, we introduce a new algorithm for ARG inference that is efficient enough to apply to dozens of complete mammalian genomes. The key idea of our approach is to sample an ARG of [Formula: see text] chromosomes conditional on an ARG of [Formula: see text] chromosomes, an operation we call "threading." Using techniques based on hidden Markov models, we can perform this threading operation exactly, up to the assumptions of the sequentially Markov coalescent and a discretization of time. An extension allows for threading of subtrees instead of individual sequences. Repeated application of these threading operations results in highly efficient Markov chain Monte Carlo samplers for ARGs. We have implemented these methods in a computer program called ARGweaver. Experiments with simulated data indicate that ARGweaver converges rapidly to the posterior distribution over ARGs and is effective in recovering various features of the ARG for dozens of sequences generated under realistic parameters for human populations. In applications of ARGweaver to 54 human genome sequences from Complete Genomics, we find clear signatures of natural selection, including regions of unusually ancient ancestry associated with balancing selection and reductions in allele age in sites under directional selection. The patterns we observe near protein-coding genes are consistent with a primary influence from background selection rather than hitchhiking, although we cannot rule out a contribution from recurrent selective

  4. Geography disentangles introgression from ancestral polymorphism in Lake Malawi cichlids.

    Science.gov (United States)

    Mims, Meryl C; Darrin Hulsey, C; Fitzpatrick, Benjamin M; Streelman, J Todd

    2010-03-01

    Phenotypically diverse Lake Malawi cichlids exhibit similar genomes. The extensive sharing of genetic polymorphism among forms has both intrigued and frustrated biologists trying to understand the nature of diversity in this and other rapidly evolving systems. Shared polymorphism might result from hybridization and/or the retention of ancestrally polymorphic alleles. To examine these alternatives, we used new genomic tools to characterize genetic differentiation in widespread, geographically structured populations of Labeotropheus fuelleborni and Metriaclima zebra. These phenotypically distinct species share mitochondrial DNA (mtDNA) haplotypes and show greater mtDNA differentiation among localities than between species. However, Bayesian analysis of nuclear single nucleotide polymorphism (SNP) data revealed two distinct genetic clusters corresponding perfectly to morphologically diagnosed L. fuelleborni and M. zebra. This result is a function of the resolving power of the multi-locus dataset, not a conflict between nuclear and mitochondrial partitions. Locus-by-locus analysis showed that mtDNA differentiation between species (F(CT)) was nearly identical to the median single-locus SNP F(CT). Finally, we asked whether there is evidence for gene flow at sites of co-occurrence. We used simulations to generate a null distribution for the level of differentiation between co-occurring populations of L. fuelleborni and M. zebra expected if there was no hybridization. The null hypothesis was rejected for the SNP data; populations that co-occur at rock reef sites were slightly more similar than expected by chance, suggesting recent gene flow. The coupling of numerous independent markers with extensive geographic sampling and simulations utilized here provides a framework for assessing the prevalence of gene flow in recently diverged species.

  5. The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

    Energy Technology Data Exchange (ETDEWEB)

    Elkins, James G.; Kunin, Victor; Anderson, Iain; Barry, Kerrie; Goltsman, Eugene; Lapidus, Alla; Hedlund, Brian; Hugenholtz, Phil; Kyrpides, Nikos; Graham, David; Keller, Martin; Wanner, Gerhard; Richardson, Paul; Stetter, Karl O.

    2007-05-01

    Based on conserved cellular properties, all life on Earth can be grouped into different phyla which belong to the primary domains Bacteria, Archaea, and Eukarya. However, tracing back their evolutionary relationships has been impeded by horizontal gene transfer and gene loss. Within the Archaea, the kingdoms Crenarchaeota and Euryarchaeota exhibit a profound divergence. In order to elucidate the evolution of these two major kingdoms, representatives of more deeply diverged lineages would be required. Based on their environmental small subunit ribosomal (ss RNA) sequences, the Korarchaeota had been originally suggested to have an ancestral relationship to all known Archaea although this assessment has been refuted. Here we describe the cultivation and initial characterization of the first member of the Korarchaeota, highly unusual, ultrathin filamentous cells about 0.16 {micro}m in diameter. A complete genome sequence obtained from enrichment cultures revealed an unprecedented combination of signature genes which were thought to be characteristic of either the Crenarchaeota, Euryarchaeota, or Eukarya. Cell division appears to be mediated through a FtsZ-dependent mechanism which is highly conserved throughout the Bacteria and Euryarchaeota. An rpb8 subunit of the DNA-dependent RNA polymerase was identified which is absent from other Archaea and has been described as a eukaryotic signature gene. In addition, the representative organism possesses a ribosome structure typical for members of the Crenarchaeota. Based on its gene complement, this lineage likely diverged near the separation of the two major kingdoms of Archaea. Further investigations of these unique organisms may shed additional light onto the evolution of extant life.

  6. The microcephalin ancestral allele in a Neanderthal individual.

    Directory of Open Access Journals (Sweden)

    Martina Lari

    Full Text Available BACKGROUND: The high frequency (around 0.70 worldwide and the relatively young age (between 14,000 and 62,000 years of a derived group of haplotypes, haplogroup D, at the microcephalin (MCPH1 locus led to the proposal that haplogroup D originated in a human lineage that separated from modern humans >1 million years ago, evolved under strong positive selection, and passed into the human gene pool by an episode of admixture circa 37,000 years ago. The geographic distribution of haplogroup D, with marked differences between Africa and Eurasia, suggested that the archaic human form admixing with anatomically modern humans might have been Neanderthal. METHODOLOGY/PRINCIPAL FINDINGS: Here we report the first PCR amplification and high-throughput sequencing of nuclear DNA at the microcephalin (MCPH1 locus from Neanderthal individual from Mezzena Rockshelter (Monti Lessini, Italy. We show that a well-preserved Neanderthal fossil dated at approximately 50,000 years B.P., was homozygous for the ancestral, non-D, allele. The high yield of Neanderthal mtDNA sequences of the studied specimen, the pattern of nucleotide misincorporation among sequences consistent with post-mortem DNA damage and an accurate control of the MCPH1 alleles in all personnel that manipulated the sample, make it extremely unlikely that this result might reflect modern DNA contamination. CONCLUSIONS/SIGNIFICANCE: The MCPH1 genotype of the Monti Lessini (MLS Neanderthal does not prove that there was no interbreeding between anatomically archaic and modern humans in Europe, but certainly shows that speculations on a possible Neanderthal origin of what is now the most common MCPH1 haplogroup are not supported by empirical evidence from ancient DNA.

  7. Genetic Diversity, Population Structure and Ancestral Origin of Australian Wheat

    Directory of Open Access Journals (Sweden)

    Reem Joukhadar

    2017-12-01

    Full Text Available Since the introduction of wheat into Australia by the First Fleet settlers, germplasm from different geographical origins has been used to adapt wheat to the Australian climate through selection and breeding. In this paper, we used 482 cultivars, representing the breeding history of bread wheat in Australia since 1840, to characterize their diversity and population structure and to define the geographical ancestral background of Australian wheat germplasm. This was achieved by comparing them to a global wheat collection using in-silico chromosome painting based on SNP genotyping. The global collection involved 2,335 wheat accessions which was divided into 23 different geographical subpopulations. However, the whole set was reduced to 1,544 accessions to increase the differentiation and decrease the admixture among different global subpopulations to increase the power of the painting analysis. Our analysis revealed that the structure of Australian wheat germplasm and its geographic ancestors have changed significantly through time, especially after the Green Revolution. Before 1920, breeders used cultivars from around the world, but mainly Europe and Africa, to select potential cultivars that could tolerate Australian growing conditions. Between 1921 and 1970, a dependence on African wheat germplasm became more prevalent. Since 1970, a heavy reliance on International Maize and Wheat Improvement Center (CIMMYT germplasm has persisted. Combining the results from linkage disequilibrium, population structure and in-silico painting revealed that the dependence on CIMMYT materials has varied among different Australian States, has shrunken the germplasm effective population size and produced larger linkage disequilibrium blocks. This study documents the evolutionary history of wheat breeding in Australia and provides an understanding for how the wheat genome has been adapted to local growing conditions. This information provides a guide for industry to

  8. CHAAJ (JUEGO DE PELOTA MESOAMERICANO: UN jUEGO ANCESTRAL ENTRE EMERGENCIAS CULTURALES

    Directory of Open Access Journals (Sweden)

    Jairzinho Francisco Panqueba Cifuentes

    2012-06-01

    Full Text Available Los juegos de pelota mesoamericanos son manifestaciones corporales que han sido exploradasprincipalmente desde perspectivas arqueológicas e históricas, pero también han sido retomadosdesde distintas iniciativas para ponerlos en práctica. Desde la frontera entre Estados Unidos conMéxico, pasando por distintos Estados del país “azteca”, son practicadas diferentes modalidades deeste juego. Sin embargo, decir que el chaaj en Mesoamérica es hoy en día una alternativa recreativay deportiva, es quedarse corto respecto a su ya demostrado potencial. La sacralidad manifestada através de los movimientos corporales está ofreciendo opciones de innovación en varios espacios de lassociedades actuales. En su dimensión ceremonial, revela una comunicación ancestral muy actual. Allíse ponen en juego los códices, las interpretaciones arqueológicas y los conocimientos territoriales depersonas sabedoras de las comunidades. En su dimensión lúdica, el juego reúne elementos culturales,deportivos y pedagógicos. Ha sido una práctica corporal, técnica y motora ejecutada constantementeen algunas regiones mexicanas y guatemaltecas. No obstante su antigüedad, en los últimos años seviene registrando una promoción inusitada, en medio de los actuales tiempos de cambio que fueronanunciados desde tiempos inmemoriales por los sabedores y las sabedoras mayas.

  9. Análisis del efecto antimicrobiano de doce plantas medicinales de uso ancestral en Ecuador

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    Azuero, Andrea

    2016-09-01

    Full Text Available The specimens of plant species Lippia citriodora K (cedrón, Ambrosia artemisifolia L (altamisa, Taraxacum officinale Weber (diente de león, Ageratum conyzoides L (mastrante, Piper carpunya Ruiz & Pav (guaviduca, Borago officinalis L (borraja, Coriandrum sativum L (cilantro,Melissa officinalis L (toronjil, Cymbopogon citratus S (hierba luisa, Artemisia absinthium L (ajenjo, Momordica charantia L (achochilla y Moringa oleífera Lam (moringa were collected randomly in the towns of Santa Rosa and Machala, Ecuador. The leaves were washed, dried, ground and extracted by maceration with methanol; the filtrates concentrated by evaporation under reduced pressure. A diffusion technique in agar was used to determine the antimicrobial activity of the obtained methanolic extracts, by which they were tested against strains of Gram-positive (Staphylococcus aureus and Gram negative bacteria (Escherichia coli and Paeruginosa, and a strain of fungus (Candida albicans. All extracts analyzed, except for those of Lcitriodora and A. conyzoides showed a bactericidal action against all bacterial strains tested, reflecting the importance of these species in the production of herbal medicines antibiotics. T. officinale and Pcarpunya showed a high antibacterial effect against E. coli; however, S. aureus did not show sensitivity to P. carpunya and L. citriodora extracts. The antifungal activity bioassay conducted to studied extracts against C. albicans, showed that all have high fungicidal action, except for T. officinale with less inhibitory effect of fungal growth. It can be inferred that these plants are a promising source of antimicrobial components of high pharmacological value.

  10. An ancestral role for the mitochondrial pyruvate carrier in glucose-stimulated insulin secretion

    Directory of Open Access Journals (Sweden)

    Kyle S. McCommis

    2016-08-01

    Conclusions: Altogether, these studies suggest that the MPC plays an important and ancestral role in insulin-secreting cells in mediating glucose sensing, regulating insulin secretion, and controlling systemic glycemia.

  11. Are hybrid species more fit than ancestral parent species in the current hybrid species habitats?

    NARCIS (Netherlands)

    Donovan, L.A.; Rosenthal, D.R.; Sanchez-Velenosi, M.; Rieseberg, L.H.; Ludwig, F.

    2010-01-01

    Hybrid speciation is thought to be facilitated by escape of early generation hybrids into new habitats, subsequent environmental selection and adaptation. Here, we ask whether two homoploid hybrid plant species (Helianthus anomalus, H. deserticola) diverged sufficiently from their ancestral parent

  12. WARACS: Wrappers to Automate the Reconstruction of Ancestral Character States1

    Science.gov (United States)

    Gruenstaeudl, Michael

    2016-01-01

    Premise of the study: Reconstructions of ancestral character states are among the most widely used analyses for evaluating the morphological, cytological, or ecological evolution of an organismic lineage. The software application Mesquite remains the most popular application for such reconstructions among plant scientists, even though its support for automating complex analyses is limited. A software tool is needed that automates the reconstruction and visualization of ancestral character states with Mesquite and similar applications. Methods and Results: A set of command line–based Python scripts was developed that (a) communicates standardized input to and output from the software applications Mesquite, BayesTraits, and TreeGraph2; (b) automates the process of ancestral character state reconstruction; and (c) facilitates the visualization of reconstruction results. Conclusions: WARACS provides a simple tool that streamlines the reconstruction and visualization of ancestral character states over a wide array of parameters, including tree distribution, character state, and optimality criterion. PMID:26949580

  13. Rapid maximum likelihood ancestral state reconstruction of continuous characters: A rerooting-free algorithm.

    Science.gov (United States)

    Goolsby, Eric W

    2017-04-01

    Ancestral state reconstruction is a method used to study the evolutionary trajectories of quantitative characters on phylogenies. Although efficient methods for univariate ancestral state reconstruction under a Brownian motion model have been described for at least 25 years, to date no generalization has been described to allow more complex evolutionary models, such as multivariate trait evolution, non-Brownian models, missing data, and within-species variation. Furthermore, even for simple univariate Brownian motion models, most phylogenetic comparative R packages compute ancestral states via inefficient tree rerooting and full tree traversals at each tree node, making ancestral state reconstruction extremely time-consuming for large phylogenies. Here, a computationally efficient method for fast maximum likelihood ancestral state reconstruction of continuous characters is described. The algorithm has linear complexity relative to the number of species and outperforms the fastest existing R implementations by several orders of magnitude. The described algorithm is capable of performing ancestral state reconstruction on a 1,000,000-species phylogeny in fewer than 2 s using a standard laptop, whereas the next fastest R implementation would take several days to complete. The method is generalizable to more complex evolutionary models, such as phylogenetic regression, within-species variation, non-Brownian evolutionary models, and multivariate trait evolution. Because this method enables fast repeated computations on phylogenies of virtually any size, implementation of the described algorithm can drastically alleviate the computational burden of many otherwise prohibitively time-consuming tasks requiring reconstruction of ancestral states, such as phylogenetic imputation of missing data, bootstrapping procedures, Expectation-Maximization algorithms, and Bayesian estimation. The described ancestral state reconstruction algorithm is implemented in the Rphylopars

  14. An Allele of an Ancestral Transcription Factor Dependent on a Horizontally Acquired Gene Product

    OpenAIRE

    Chen, H. Deborah; Jewett, Mollie W.; Groisman, Eduardo A.

    2012-01-01

    Changes in gene regulatory circuits often give rise to phenotypic differences among closely related organisms. In bacteria, these changes can result from alterations in the ancestral genome and/or be brought about by genes acquired by horizontal transfer. Here, we identify an allele of the ancestral transcription factor PmrA that requires the horizontally acquired pmrD gene product to promote gene expression. We determined that a single amino acid difference between the PmrA proteins from the...

  15. Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference.

    Science.gov (United States)

    Krishnan, Neeraja M; Seligmann, Hervé; Stewart, Caro-Beth; De Koning, A P Jason; Pollock, David D

    2004-10-01

    Reconstruction of ancestral DNA and amino acid sequences is an important means of inferring information about past evolutionary events. Such reconstructions suggest changes in molecular function and evolutionary processes over the course of evolution and are used to infer adaptation and convergence. Maximum likelihood (ML) is generally thought to provide relatively accurate reconstructed sequences compared to parsimony, but both methods lead to the inference of multiple directional changes in nucleotide frequencies in primate mitochondrial DNA (mtDNA). To better understand this surprising result, as well as to better understand how parsimony and ML differ, we constructed a series of computationally simple "conditional pathway" methods that differed in the number of substitutions allowed per site along each branch, and we also evaluated the entire Bayesian posterior frequency distribution of reconstructed ancestral states. We analyzed primate mitochondrial cytochrome b (Cyt-b) and cytochrome oxidase subunit I (COI) genes and found that ML reconstructs ancestral frequencies that are often more different from tip sequences than are parsimony reconstructions. In contrast, frequency reconstructions based on the posterior ensemble more closely resemble extant nucleotide frequencies. Simulations indicate that these differences in ancestral sequence inference are probably due to deterministic bias caused by high uncertainty in the optimization-based ancestral reconstruction methods (parsimony, ML, Bayesian maximum a posteriori). In contrast, ancestral nucleotide frequencies based on an average of the Bayesian set of credible ancestral sequences are much less biased. The methods involving simpler conditional pathway calculations have slightly reduced likelihood values compared to full likelihood calculations, but they can provide fairly unbiased nucleotide reconstructions and may be useful in more complex phylogenetic analyses than considered here due to their speed and

  16. Ancestral effect on HOMA-IR levels quantitated in an American population of Mexican origin.

    Science.gov (United States)

    Qu, Hui-Qi; Li, Quan; Lu, Yang; Hanis, Craig L; Fisher-Hoch, Susan P; McCormick, Joseph B

    2012-12-01

    An elevated insulin resistance index (homeostasis model assessment of insulin resistance [HOMA-IR]) is more commonly seen in the Mexican American population than in European populations. We report quantitative ancestral effects within a Mexican American population, and we correlate ancestral components with HOMA-IR. We performed ancestral analysis in 1,551 participants of the Cameron County Hispanic Cohort by genotyping 103 ancestry-informative markers (AIMs). These AIMs allow determination of the percentage (0-100%) ancestry from three major continental populations, i.e., European, African, and Amerindian. We observed that predominantly Amerindian ancestral components were associated with increased HOMA-IR (β = 0.124, P = 1.64 × 10(-7)). The correlation was more significant in males (Amerindian β = 0.165, P = 5.08 × 10(-7)) than in females (Amerindian β = 0.079, P = 0.019). This unique study design demonstrates how genomic markers for quantitative ancestral information can be used in admixed populations to predict phenotypic traits such as insulin resistance.

  17. On the Accuracy of Ancestral Sequence Reconstruction for Ultrametric Trees with Parsimony.

    Science.gov (United States)

    Herbst, Lina; Fischer, Mareike

    2018-04-01

    We examine a mathematical question concerning the reconstruction accuracy of the Fitch algorithm for reconstructing the ancestral sequence of the most recent common ancestor given a phylogenetic tree and sequence data for all taxa under consideration. In particular, for the symmetric four-state substitution model which is also known as Jukes-Cantor model, we answer affirmatively a conjecture of Li, Steel and Zhang which states that for any ultrametric phylogenetic tree and a symmetric model, the Fitch parsimony method using all terminal taxa is more accurate, or at least as accurate, for ancestral state reconstruction than using any particular terminal taxon or any particular pair of taxa. This conjecture had so far only been answered for two-state data by Fischer and Thatte. Here, we focus on answering the biologically more relevant case with four states, which corresponds to ancestral sequence reconstruction from DNA or RNA data.

  18. Textural analysis of particles from El Zaguán debris avalanche deposit, Nevado de Toluca volcano, Mexico: Evidence of flow behavior during emplacement

    Science.gov (United States)

    Caballero, Lizeth; Capra, Lucia

    2011-02-01

    El Zaguán deposit originated at 28,000 yrs. B.P. from the flank collapse of Nevado de Toluca, a dacitic stratovolcano of the Transmexican Volcanic Belt. Scanning Electron Microprobe analyses (SEM) were performed on some particles from this deposit to observe microtextures produced during transport and emplacement of the debris avalanche flow. Particles from 2ϕ (250 μm), 0ϕ (1 mm) and - 2ϕ (4 mm) granulometric classes were randomly selected at different outcrops, and their surface textures were described. The observed textures are divided in two groups, Basal and Upper textures, each one indicating different clast interactions. Basal textures are observed predominantly in the lower part of the deposit and consist of parallel ridges, parallel grooves, scratches and lips. Upper textures are mainly present in the upper part of the deposit and consisted of fractures, percussion marks, and broken or grinded crystals. These characteristics, coupled with field observations such as the presence of clastic dikes and deformed lacustrine mega-blocks, indicate that the basal part of the debris avalanche was moving in a partially liquefied state. By contrast, the particles in the upper part were able to move freely, interacting by collision. These microscopic textures are in agreement with previously described emplacement behaviors in debris avalanches of volcanic origin, suggesting a stratified flow dominated by different transport and depositional mechanisms depending upon flow depth and possible fluid content at their base.

  19. Sr, Nd and Pb isotope and geochemical data from the Quaternary Nevado de Toluca volcano, a source of recent adakitic magmatism, and the Tenango Volcanic Field, Mexico

    Science.gov (United States)

    Martínez-Serrano, Raymundo G.; Schaaf, Peter; Solís-Pichardo, Gabriela; Hernández-Bernal, Ma. del Sol; Hernández-Treviño, Teodoro; Julio Morales-Contreras, Juan; Macías, José Luis

    2004-11-01

    Volcanic activity at Nevado de Toluca (NT) volcano began 2.6 Ma ago with the emission of andesitic lavas, but over the past 40 ka, eruptions have produced mainly lava flows and pyroclastic deposits of predominantly orthopyroxene-hornblende dacitic composition. In the nearby Tenango Volcanic Field (TVF) pyroclastic products and lava flows ranging in composition from basaltic andesite to andesite were erupted at most of 40 monogenetic volcanic centers and were coeval with the last stages of NT. All volcanic rocks in the study area are characterized by a calc-alkaline affinity that is consistent with a subduction setting. Relatively high concentrations of Sr (>460 ppm) coupled with low Y (45 km) that underlies the volcanoes of the study area, the geochemical and isotopic patterns of these rocks indicate low interaction with this crust. NT volcano was constructed at the intersection of three fault systems, and it seems that the Plio-Quaternary E-W system played an important role in the ascent and storage of magmas during the recent volcanic activity in the two regions. Chemical and textural features of orthopyroxene, amphibole and Fe-Ti oxides from NT suggest that crystallization of magmas occurred at polybaric conditions, confirming the rapid upwelling of magmas.

  20. Sem Analysis of particles from the 28, 000 B.P El Zaguan debris avalanche deposit, Nevado de Toluca volcano, Central Mexico: evidences of flow behavior during emplacement

    Science.gov (United States)

    Caballero, L.; Capra, L.

    2008-12-01

    The Zaguan deposit originated at 28, 000 yr. B.P from the flank collapse of the Nevado de Toluca volcano, a dacitic stratovolcano of the Transmexican Volcanic Belt. A Scanning Electron Microprobe analysis (SEM) was made to some clasts of this deposit to observe microtextures produced during transport and emplacement of the debris avalanche flow. Particles from 2, 0 and -2 Φ granulometric classes were randomly selected and their surface textures were described. The textures observed were divided in two groups, collision and shear structures indicating different clast interaction. Shear textures were observed predominantly on the basal part of the deposit and consisted of parallel ridges, parallel grooves, scratches and lips. Collision textures were mainly present in the upper part of the deposit and consisted of fractures, percussion marks, and broken or grinded crystals. These characteristics, coupled with field observation, like the presence of clast dikes and deformed lacustrine megaclasts, indicate that the basal part of the debris avalanche was moving in a partially liquefied state, were particles were not able to move freely because of the confinement exerted by the upper part of the flow, so shear stresses dominated. On the contrary, the particles in the upper part were able to move freely so the principal mechanism of interaction between particles was collision. These microscopic textures are in agreement with previously described behavior of emplacement of debris avalanches of volcanic origin, that suggest a stratified flow dominated by different transport and depositional mechanism depending on flow depth and possible fluid content at their base.

  1. DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies

    Science.gov (United States)

    Anselmetti, Yoann; Patterson, Murray; Ponty, Yann; B�rard, S�verine; Chauve, Cedric; Scornavacca, Celine; Daubin, Vincent; Tannier, Eric

    2017-01-01

    DeCoSTAR is a software that aims at reconstructing the organization of ancestral genes or genomes in the form of sets of neighborhood relations (adjacencies) between pairs of ancestral genes or gene domains. It can also improve the assembly of fragmented genomes by proposing evolutionary-induced adjacencies between scaffolding fragments. Ancestral genes or domains are deduced from reconciled phylogenetic trees under an evolutionary model that considers gains, losses, speciations, duplications, and transfers as possible events for gene evolution. Reconciliations are either given as input or computed with the ecceTERA package, into which DeCoSTAR is integrated. DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on a weighted sum of adjacency gains and breakages. Solutions, both optimal and near-optimal, are sampled according to the Boltzmann–Gibbs distribution centered around parsimonious solutions, and statistical supports on ancestral and extant adjacencies are provided. DeCoSTAR supports the features of previously contributed tools that reconstruct ancestral adjacencies, namely DeCo, DeCoLT, ART-DeCo, and DeClone. In a few minutes, DeCoSTAR can reconstruct the evolutionary history of domains inside genes, of gene fusion and fission events, or of gene order along chromosomes, for large data sets including dozens of whole genomes from all kingdoms of life. We illustrate the potential of DeCoSTAR with several applications: ancestral reconstruction of gene orders for Anopheles mosquito genomes, multidomain proteins in Drosophila, and gene fusion and fission detection in Actinobacteria. Availability: http://pbil.univ-lyon1.fr/software/DeCoSTAR (Last accessed April 24, 2017). PMID:28402423

  2. Ancestral TCDD exposure promotes epigenetic transgenerational inheritance of imprinted gene Igf2: Methylation status and DNMTs

    International Nuclear Information System (INIS)

    Ma, Jing; Chen, Xi; Liu, Yanan; Xie, Qunhui; Sun, Yawen; Chen, Jingshan; Leng, Ling; Yan, Huan; Zhao, Bin; Tang, Naijun

    2015-01-01

    Ancestral TCDD exposure could induce epigenetic transgenerational phenotypes, which may be mediated in part by imprinted gene inheritance. The aim of our study was to evaluate the transgenerational effects of ancestral TCDD exposure on the imprinted gene insulin-like growth factor-2 (Igf2) in rat somatic tissue. TCDD was administered daily by oral gavage to groups of F0 pregnant SD rats at dose levels of 0 (control), 200 or 800 ng/kg bw during gestation day 8–14. Animal transgenerational model of ancestral exposure to TCDD was carefully built, avoiding sibling inbreeding. Hepatic Igf2 expression of the TCDD male progeny was decreased concomitantly with hepatic damage and increased activities of serum hepatic enzymes both in the F1 and F3 generation. Imprinted Control Region (ICR) of Igf2 manifested a hypermethylated pattern, whereas methylation status in the Differentially Methylated Region 2 (DMR2) showed a hypomethylated manner in the F1 generation. These epigenetic alterations in these two regions maintained similar trends in the F3 generation. Meanwhile, the expressions of DNA methyltransferases (DNMT1, DNMT3A and DNMT3B) changed in a non-monotonic manner both in the F1 and F3 generation. This study provides evidence that ancestral TCDD exposure may promote epigenetic transgenerational alterations of imprinted gene Igf2 in adult somatic tissue. - Highlights: • Ancestral TCDD exposure induces epigenetic transgenerational inheritance. • Ancestral TCDD exposure affects methylation status in ICR and DMR2 region of Igf2. • DNMTs play a role in TCDD induced epigenetic transgenerational changes of Igf2.

  3. Asymptotic distributions of coalescence times and ancestral lineage numbers for populations with temporally varying size.

    Science.gov (United States)

    Chen, Hua; Chen, Kun

    2013-07-01

    The distributions of coalescence times and ancestral lineage numbers play an essential role in coalescent modeling and ancestral inference. Both exact distributions of coalescence times and ancestral lineage numbers are expressed as the sum of alternating series, and the terms in the series become numerically intractable for large samples. More computationally attractive are their asymptotic distributions, which were derived in Griffiths (1984) for populations with constant size. In this article, we derive the asymptotic distributions of coalescence times and ancestral lineage numbers for populations with temporally varying size. For a sample of size n, denote by Tm the mth coalescent time, when m + 1 lineages coalesce into m lineages, and An(t) the number of ancestral lineages at time t back from the current generation. Similar to the results in Griffiths (1984), the number of ancestral lineages, An(t), and the coalescence times, Tm, are asymptotically normal, with the mean and variance of these distributions depending on the population size function, N(t). At the very early stage of the coalescent, when t → 0, the number of coalesced lineages n - An(t) follows a Poisson distribution, and as m → n, $$n\\left(n-1\\right){T}_{m}/2N\\left(0\\right)$$ follows a gamma distribution. We demonstrate the accuracy of the asymptotic approximations by comparing to both exact distributions and coalescent simulations. Several applications of the theoretical results are also shown: deriving statistics related to the properties of gene genealogies, such as the time to the most recent common ancestor (TMRCA) and the total branch length (TBL) of the genealogy, and deriving the allele frequency spectrum for large genealogies. With the advent of genomic-level sequencing data for large samples, the asymptotic distributions are expected to have wide applications in theoretical and methodological development for population genetic inference.

  4. Reconstructed Ancestral Enzymes Impose a Fitness Cost upon Modern Bacteria Despite Exhibiting Favourable Biochemical Properties.

    Science.gov (United States)

    Hobbs, Joanne K; Prentice, Erica J; Groussin, Mathieu; Arcus, Vickery L

    2015-10-01

    Ancestral sequence reconstruction has been widely used to study historical enzyme evolution, both from biochemical and cellular perspectives. Two properties of reconstructed ancestral proteins/enzymes are commonly reported--high thermostability and high catalytic activity--compared with their contemporaries. Increased protein stability is associated with lower aggregation rates, higher soluble protein abundance and a greater capacity to evolve, and therefore, these proteins could be considered "superior" to their contemporary counterparts. In this study, we investigate the relationship between the favourable in vitro biochemical properties of reconstructed ancestral enzymes and the organismal fitness they confer in vivo. We have previously reconstructed several ancestors of the enzyme LeuB, which is essential for leucine biosynthesis. Our initial fitness experiments revealed that overexpression of ANC4, a reconstructed LeuB that exhibits high stability and activity, was only able to partially rescue the growth of a ΔleuB strain, and that a strain complemented with this enzyme was outcompeted by strains carrying one of its descendants. When we expanded our study to include five reconstructed LeuBs and one contemporary, we found that neither in vitro protein stability nor the catalytic rate was correlated with fitness. Instead, fitness showed a strong, negative correlation with estimated evolutionary age (based on phylogenetic relationships). Our findings suggest that, for reconstructed ancestral enzymes, superior in vitro properties do not translate into organismal fitness in vivo. The molecular basis of the relationship between fitness and the inferred age of ancestral LeuB enzymes is unknown, but may be related to the reconstruction process. We also hypothesise that the ancestral enzymes may be incompatible with the other, contemporary enzymes of the metabolic network.

  5. Historia del vuelo aviano

    Directory of Open Access Journals (Sweden)

    Sanz, José Luis

    1998-12-01

    Full Text Available Not available.El análisis del registro fósil proporciona información sobre la historia evolutiva del aparato volador aviano y el origen y desarrollo del vuelo moderno. Existen dos hipótesis alternativas para explicar las complejas presiones de selección que configuraron la aparición del vuelo. La propuesta del corredor («desde el suelo hacia arriba» es la que mejor se ajusta a la evidencia disponible. El ave primitiva Archaeopteryx produciría, probablemente, algún tipo de vuelo batido, aunque su capacidad de maniobra, despegue y aterrizaje sería limitada. El vuelo activo moderno comenzó, durante el Cretácico inferior, con las aves ornitotoraces basales, como Iberomesornis. No obstante, esta ave primitiva, cuya capacidad de vuelo estaba claramente incrementada con respecto a la condición ancestral presente en Archaeopteryx, tampoco parece tener las perfectas habilidades voladoras de las aves modernas.

  6. Which came first: The lizard or the egg? Robustness in phylogenetic reconstruction of ancestral states.

    Science.gov (United States)

    Wright, April M; Lyons, Kathleen M; Brandley, Matthew C; Hillis, David M

    2015-09-01

    Changes in parity mode between egg-laying (oviparity) and live-bearing (viviparity) have occurred repeatedly throughout vertebrate evolution. Oviparity is the ancestral amniote state, and viviparity has evolved many times independently within amniotes (especially in lizards and snakes), with possibly a few reversions to oviparity. In amniotes, the shelled egg is considered a complex structure that is unlikely to re-evolve if lost (i.e., it is an example of Dollo's Principle). However, a recent ancestral state reconstruction analysis concluded that viviparity was the ancestral state of squamate reptiles (lizards and snakes), and that oviparity re-evolved from viviparity many times throughout the evolutionary history of squamates. Here, we re-evaluate support for this provocative conclusion by testing the sensitivity of the analysis to model assumptions and estimates of squamate phylogeny. We found that the models and methods used for parity mode reconstruction are highly sensitive to the specific estimate of phylogeny used, and that the point estimate of phylogeny used to suggest that viviparity is the root state of the squamate tree is far from an optimal phylogenetic solution. The ancestral state reconstructions are also highly sensitive to model choice and specific values of model parameters. A method that is designed to account for biases in taxon sampling actually accentuates, rather than lessens, those biases with respect to ancestral state reconstructions. In contrast to recent conclusions from the same data set, we find that ancestral state reconstruction analyses provide highly equivocal support for the number and direction of transitions between oviparity and viviparity in squamates. Moreover, the reconstructions of ancestral parity state are highly dependent on the assumptions of each model. We conclude that the common ancestor of squamates was oviparous, and subsequent evolutionary transitions to viviparity were common, but reversals to oviparity were

  7. ¿Con o sin ancestros?: vigencia de lo ancestral en la Amazonía peruana

    Directory of Open Access Journals (Sweden)

    Thomas Mouriès

    2014-06-01

    Full Text Available La existencia o no de ancestros en la Amazonía indígena ha sido objeto de importantes debates. Sin embargo, los líderes de la región no dudan en llamar ‘ancestrales’ sus saberes, normas o territorios, en un sentido que, desde un punto de vista académico, puede parecer enigmático. «Ancestrales, pero… ¿con o sin ancestros?», preguntaría entonces, confuso, el antropólogo. En este artículo propongo aportar elementos de respuesta a esta pregunta a través del caso peruano. Primero analizo cómo los líderes indígenas amazónicos, conectándose al circuito del derecho internacional, adoptan la noción jurídica de ‘posesión ancestral’ del territorio para adaptarla al ámbito político. Este planteamiento rinde cuenta de la generalización y uniformización reciente del vocablo ‘ancestral’ pero deja pendiente el problema de su eventual articulación con las cosmologías indígenas que pretende reflejar. Por eso, en la segunda parte, intento sondear sobre la pertinencia de la categoría de ‘ancestro’ en la Amazonía indígena, recordando brevemente el debate académico para ir definiendo en qué medida esta categoría puede cobrar sentido. A partir del testimonio de un experimentado líder awajún, la tercera parte permite, entonces, volver más explícitos los diferentes sentidos y planos referenciales que despliega la referencia a lo ancestral, mostrando cómo los indígenas amazónicos no solo adoptan elementos conceptuales y discursivos externos, sino que al mismo tiempo los transforman a partir de sus propias singularidades cosmológicas y perspectivas políticas.

  8. Inheritance of the 8.1 ancestral haplotype in recurrent pregnancy loss

    DEFF Research Database (Denmark)

    Kolte, Astrid M; Nielsen, Henriette S; Steffensen, Rudi

    2015-01-01

    BACKGROUND AND OBJECTIVES: The 8.1 ancestral haplotype (AH) (HLA-A1, C7, B8, C4AQ0, C4B1, DR3, DQ2) is a remarkably long and conserved haplotype in the human major histocompatibility complex. It has been associated with both beneficial and detrimental effects, consistent with antagonistic...

  9. Inferring ancestral distribution area and survival vegetation of Caragana (Fabaceae) in Tertiary

    Science.gov (United States)

    Mingli Zhang; Juanjuan Xue; Qiang Zhang; Stewart C. Sanderson

    2015-01-01

    Caragana, a leguminous genus mainly restricted to temperate Central and East Asia, occurs in arid, semiarid, and humid belts, and has forest, grassland, and desert ecotypes. Based on the previous molecular phylogenetic tree and dating, biogeographical analyses of extant species area and ecotype were conducted by means of four ancestral optimization approaches: S-DIVA,...

  10. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

    DEFF Research Database (Denmark)

    Olalde, Inigo; Allentoft, Morten E.; Sanchez-Quinto, Federico

    2014-01-01

    to the Mesolithic. The La Brana individual carries ancestral alleles in several skin pigmentation genes, suggesting that the light skin of modern Europeans was not yet ubiquitous in Mesolithic times. Moreover, we provide evidence that a significant number of derived, putatively adaptive variants associated...

  11. Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa[C][W

    Science.gov (United States)

    Cheng, Feng; Mandáková, Terezie; Wu, Jian; Xie, Qi; Lysak, Martin A.; Wang, Xiaowu

    2013-01-01

    The genus Brassica includes several important agricultural and horticultural crops. Their current genome structures were shaped by whole-genome triplication followed by extensive diploidization. The availability of several crucifer genome sequences, especially that of Chinese cabbage (Brassica rapa), enables study of the evolution of the mesohexaploid Brassica genomes from their diploid progenitors. We reconstructed three ancestral subgenomes of B. rapa (n = 10) by comparing its whole-genome sequence to ancestral and extant Brassicaceae genomes. All three B. rapa paleogenomes apparently consisted of seven chromosomes, similar to the ancestral translocation Proto-Calepineae Karyotype (tPCK; n = 7), which is the evolutionarily younger variant of the Proto-Calepineae Karyotype (n = 7). Based on comparative analysis of genome sequences or linkage maps of Brassica oleracea, Brassica nigra, radish (Raphanus sativus), and other closely related species, we propose a two-step merging of three tPCK-like genomes to form the hexaploid ancestor of the tribe Brassiceae with 42 chromosomes. Subsequent diversification of the Brassiceae was marked by extensive genome reshuffling and chromosome number reduction mediated by translocation events and followed by loss and/or inactivation of centromeres. Furthermore, via interspecies genome comparison, we refined intervals for seven of the genomic blocks of the Ancestral Crucifer Karyotype (n = 8), thus revising the key reference genome for evolutionary genomics of crucifers. PMID:23653472

  12. A skull might lie: modelling ancestral ranges and diet from genes and shape of tree squirrels

    Czech Academy of Sciences Publication Activity Database

    Pečnerová, Patrícia; Moravec, Jiří C.; Martínková, Natália

    2015-01-01

    Roč. 64, č. 6 (2015), s. 1074-1088 ISSN 1063-5157 EU Projects: European Commission(XE) CZ.1.07/2.4.00/17.0138 Institutional support: RVO:68081766 Keywords : Sciurini * multilocus phylogeny * geometric morphometry * speciation * ancestral range reconstruction * diet modelling Subject RIV: EG - Zoology Impact factor: 8.225, year: 2015

  13. Language Shift and Maintenance in Multilingual Mauritius: The Case of Indian Ancestral Languages

    Science.gov (United States)

    Bissoonauth, Anu

    2011-01-01

    This paper reports on a research study conducted in Mauritius between June and July 2009. The aim of this research was to investigate the use of Indian ancestral languages in the domestic domain by the younger generations. The data were collected in the field by means of a questionnaire and interviews from a quota sample of secondary school…

  14. ANÁLISIS SOCIAL SOBRE LOS HABITANTES DE LA COMUNIDAD DE LA PEÑUELA, PARQUE NACIONAL NEVADO DE TOLUCA, MÉXICO. Valores y comportamiento entorno al turismo

    OpenAIRE

    Blanca Vallejo Valencia

    2013-01-01

    Este artículo tiene el propósito de fortalecer los estudios cualitativos sobre el carácter social de las comunidades rurales vinculadas a áreas naturales protegidas. El objetivo es el de caracterizar el ethos social de la comunidad de La Peñuela, localizada en el Parque Nacional Nevado de Toluca, para conocer sus valores, creencias, normas de comportamiento, preferencias y motivaciones con relación al desarrollo de la actividad turística en su localidad. Para su cumplimiento se lleva a cabo l...

  15. RidgeRace: ridge regression for continuous ancestral character estimation on phylogenetic trees.

    Science.gov (United States)

    Kratsch, Christina; McHardy, Alice C

    2014-09-01

    Ancestral character state reconstruction describes a set of techniques for estimating phenotypic or genetic features of species or related individuals that are the predecessors of those present today. Such reconstructions can reach into the distant past and can provide insights into the history of a population or a set of species when fossil data are not available, or they can be used to test evolutionary hypotheses, e.g. on the co-evolution of traits. Typical methods for ancestral character state reconstruction of continuous characters consider the phylogeny of the underlying data and estimate the ancestral process along the branches of the tree. They usually assume a Brownian motion model of character evolution or extensions thereof, requiring specific assumptions on the rate of phenotypic evolution. We suggest using ridge regression to infer rates for each branch of the tree and the ancestral values at each inner node. We performed extensive simulations to evaluate the performance of this method and have shown that the accuracy of its reconstructed ancestral values is competitive to reconstructions using other state-of-the-art software. Using a hierarchical clustering of gene mutation profiles from an ovarian cancer dataset, we demonstrate the use of the method as a feature selection tool. The algorithm described here is implemented in C++ as a stand-alone program, and the source code is freely available at http://algbio.cs.uni-duesseldorf.de/software/RidgeRace.tar.gz. Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press.

  16. The Upper Toluca Pumice (10.5 kyr): Product of the last major Plinian eruption of Nevado de Toluca volcano, Central Mexico

    Science.gov (United States)

    Arce, J. L.; Macias, J. L.

    2001-12-01

    The last Plinian eruption at Nevado de Toluca volcano occurred 10.5 kyr ago producing the Upper Toluca Pumice (UTP). The UTP consists of four widespread fallout layers, interbedded with pyroclastic flow and surge deposits. The UTP event occurred under open vent conditions starting with hydromagmatic explosions that emplaced a hot pyroclastic flow (F0) on the east and northern flanks of the volcano. This explosion decompressed the magmatic system allowing almost immediately the formation of a 21 km high Plinian column that was dispersed by predominant winds 5o to the NE (PC0), which waned after some time. The eruption recommenced with the establishment of three Plinian columns that were dispersed in a NE-E direction, reaching heights of 39, 42, and 28 km, and deposited fall layers (PC1, PC2, and PC3) respectively. These Plinian columns were interrupted several times by phreatomagmatic and collapse events that emplaced pyroclastic flows (F1, F2, and F3) and surges (S1, and S2), mainly on the eastern and northern flanks of the volcano. The juvenile components of the UTP sequence are white, gray and banded pumice and gray juvenile lithic clasts both of dacitic composition (63-66wt% SiO2), and minor accidental lithics. The fallout deposits (PC1 and PC2) covered a minimum area of 2000 km2 with a total volume of 14 km3 (ca. 6 km3 D.R.E.); a mass eruption rate ranging from 3\\times107 to 5\\times108 kg/s and a total mass of 1.2\\times1013 kg. The UTP emplaced 1.5 m of gravel-sized pumice in the modern City of Toluca region and ca. 20 cm of fine sand in the Mexico City region. A future event of this magnitude might represent a major catastrophe to the 30 million people living in these cities and their surroundings.

  17. Pre-eruptive conditions of dacitic magma erupted during the 21.7 ka Plinian event at Nevado de Toluca volcano, Central Mexico

    Science.gov (United States)

    Arce, J. L.; Gardner, J. E.; Macías, J. L.

    2013-01-01

    The Nevado de Toluca volcano in Central Mexico has been active over the last ca. 42 ka, during which tens of km3 of pyroclastic material were erupted and two important Plinian-type eruptions occurred at ca. 21.7 ka (Lower Toluca Pumice: LTP) and ca. 10.5 ka (Upper Toluca Pumice: UTP). Samples from both the LTP and UTP contain plagioclase, amphibole, iron-titanium oxides, and minor anhedral biotite, set in a vesicular, rhyolitic, glassy matrix. In addition, UTP dacites contain orthopyroxene. Analysis of melt inclusions in plagioclase phenocrysts yields H2O contents of 2-3.5 wt.% for LTP and 1.3-3.6 wt.% for UTP samples. Ilmenite-ulvospinel geothermometry yields an average temperature of ~ 868 °C for the LTP magma (hotter than the UTP magma, ~ 842 °C; Arce et al., 2006), whereas amphibole-plagioclase geothermometry yields a temperature of 825-859 °C for the LTP magma. Water-saturated experiments using LTP dacite suggest that: (i) amphibole is stable above 100 MPa and below 900 °C; (ii) plagioclase crystallizes below 250-100 MPa at temperatures of 850-900 °C; and (iii) pyroxene is stable only below pressures of 200-100 MPa and temperatures of 825-900 °C. Comparison of natural and experimental data suggests that the LTP dacitic magma was stored at 150-200 MPa (5.8-7.7 km below the volcano summit). No differences in pressure found between 21.7 ka and 10.5 ka suggest that these two magmas were stored at similar depths. Orthopyroxene produced in lower temperature LTP experiments is compositionally different to those found in UTP natural samples, suggesting that they originated in two different magma batches. Whole-rock chemistry, petrographic features, and mineral compositions suggest that magma mixing was responsible for the generation of the dacitic Plinian LTP eruption.

  18. Metamorphic brines and no surficial fluids trapped in the detachment footwall of a Metamorphic Core Complex (Nevado-Filábride units, Betics, Spain)

    Science.gov (United States)

    Dyja-Person, Vanessa; Tarantola, Alexandre; Richard, Antonin; Hibsch, Christian; Siebenaller, Luc; Boiron, Marie-Christine; Cathelineau, Michel; Boulvais, Philippe

    2018-03-01

    The ductile-brittle transition zone in extensional regimes can play the role of a hydrogeological barrier. Quartz veins developed within an orthogneiss body located in the detachment footwall of a Metamorphic Core Complex (MCC) in the Nevado-Filábride units (Betics, Spain). The detachment footwall is composed mainly of gneisses, schists and metacarbonates from the Bédar-Macael sub-unit. Schist and metacarbonate bodies show evidence of ductile deformation at the time the gneiss was already undergoing brittle deformation and vein opening during exhumation. The vein system provides the opportunity to investigate the origin, composition and PVTX conditions of the fluids that circulated in the detachment footwall while the footwall units were crossing the ductile-brittle transition. The analysis of fluid inclusions reveals the presence of a single type of fluid: 30-40 mass% NaCl > KCl > CaCl2 > MgCl2 brines, with trace amounts of CO2 and N2 and tens to thousands of ppm of metals such as Fe, Sr, Li, Zn, Ba, Pb and Cu. δDfluid values between -39.8 and -16.7‰ and δ18Ofluid values between 4.4 and 11.7 ± 0.5‰ show that the brines have undergone protracted interaction with the host orthogneissic body. Coupled salinity and Cl/Br ratios (200 to 4400) indicate that the brines originate from dissolution of Triassic metaevaporites by metamorphic fluids variably enriched in Br by interaction with graphitic schists. This study highlights the absence of any record of surficial fluids within the veins, despite the brittle deformation conditions prevailing in this orthogneiss body. The fact that fluids from the detachment footwall were isolated from surficial fluid reservoirs may result from the presence of overlying schists and metacarbonates that continued to be affected by ductile deformation during vein formation in the gneiss, preventing downward circulation of surface-derived fluids.

  19. FUNCIONES ORTOGONALES EMPÍRICAS (EOF APLICADAS A LAS CUENCAS OCEÁNICAS TROPICALES INDO-PACÍFICA Y ATLÁNTICA: CONTRIBUCIONES AL ANÁLISIS DE LAS CONDICIONES DE COBERTURA DE NUBES EN EL PARQUE NACIONAL NATURAL LOS NEVADOS FUNÇÕES ORTOGONAIS EMPÍRICAS (EOF APLICADAS ÀS BACIAS OCEÂNICAS TROPICAIS INDO-PACÍFICA E ATLÂNTICA: CONTRIBUIÇÕES PARA A ANÁLISE DAS CONDIÇÕES DA COBERTURA DE NUVENS NO PARQUE NACIONAL NATURAL LOS NEVADOS INDO-PACIFIC AND TROPICAL ATLANTIC EOF MODES: CONTRIBUTIONS TO THE ANALYSES OF CLOUD COVER CONDITIONS IN THE LOS NEVADOS NATURAL PARK

    Directory of Open Access Journals (Sweden)

    DANIEL RUIZ CARRASCAL

    2010-12-01

    Full Text Available Los páramos colombianos están experimentando un aumento en su estrés climático. Uno de los factores clave detrás de esto es el cambio en las condiciones de cobertura de nubes, que dependen de procesos regionales y locales. Este trabajo busca explorar el grado de asociación entre la variabilidad año a año de las temperaturas superficiales del mar (TSM observadas en las zonas tropicales de los océanos Índico-Pacífico y Atlántico y los cambios de año a año en las condiciones de cobertura regional de nubes imperantes en la cordillera Central de Colombia, pero enfocándose en el píxel de la retícula satelital donde se encuentran el macizo volcánico Ruiz-Tolima, el Parque Nacional Natural Los Nevados y sus alrededores. Los registros analizados incluyen valores promedio mensuales de TSM observados en la región Niño 3.4 del Pacífico ecuatorial, anomalías de las TSM observadas en las cuencas tropicales del Índico-Pacífico y el Atlántico, así como la cobertura de nubes de todo tipo y la presión atmosférica en su capa alta observadas sobre los Andes septentrionales. Aunque se procesan los datos de cuatro meses "secos", la discusión se centra en las condiciones de enero, cuando las zonas de alta montaña de la cordillera Central de Colombia están expuestas a máximos de brillo solar. Los análisis de funciones ortogonales empíricas (EOF / componentes principales (PC se llevan a cabo para identificar los principales modos de variabilidad de las TSM, tales como El Niño-Oscilación del Sur (ENOS. Los primeros modos de EOF en las anomalías de las TSM observadas en enero en las regiones 30°S a 30°N y 15°S a 15°N del Índico-Pacífico representan, en particular, la fase madura del ENOS y explican el 30,7 % y 44,3 %, respectivamente, de la variabilidad espacio-temporal de las anomalías de las TSM en enero. El primer modo de EOF de anomalías de las TSM observadas en enero en las latitudes 19°S a 29°N del Atlántico tropical

  20. Inference of the ancestral vertebrate phenotype through vestiges of the whole-genome duplications.

    Science.gov (United States)

    Onimaru, Koh; Kuraku, Shigehiro

    2018-03-16

    Inferring the phenotype of the last common ancestor of living vertebrates is a challenging problem because of several unresolvable factors. They include the lack of reliable out-groups of living vertebrates, poor information about less fossilizable organs and specialized traits of phylogenetically important species, such as lampreys and hagfishes (e.g. secondary loss of vertebrae in adult hagfishes). These factors undermine the reliability of ancestral reconstruction by traditional character mapping approaches based on maximum parsimony. In this article, we formulate an approach to hypothesizing ancestral vertebrate phenotypes using information from the phylogenetic and functional properties of genes duplicated by genome expansions in early vertebrate evolution. We named the conjecture as 'chronological reconstruction of ohnolog functions (CHROF)'. This CHROF conjecture raises the possibility that the last common ancestor of living vertebrates may have had more complex traits than currently thought.

  1. Temperature-dependent respiration-growth relations in ancestral maize cultivars

    Science.gov (United States)

    Bruce N. Smith; Jillian L. Walker; Rebekka L. Stone; Angela R. Jones; Lee D. Hansen

    2001-01-01

    Shoots from 4- to 6-day old seedlings of seven ancestral or old cultivars of Zea mays L. were placed in a calorimeter. Dark metabolic heat rate (q) and CO2 production rate (RCO2) were measured at nine temperatures (5, 10, 15, 20, 25, 30, 35, 40, and 45 °C). Temperature dependencies of q and RCO2 were used to model response of both growth and substrate carbon conversion...

  2. Mechanisms for the Evolution of a Derived Function in the Ancestral Glucocorticoid Receptor

    Energy Technology Data Exchange (ETDEWEB)

    Carroll, Sean Michael; Ortlund, Eric A; Thornton, Joseph W. (Emory-MED); (Harvard); (Oregon)

    2012-03-16

    Understanding the genetic, structural, and biophysical mechanisms that caused protein functions to evolve is a central goal of molecular evolutionary studies. Ancestral sequence reconstruction (ASR) offers an experimental approach to these questions. Here we use ASR to shed light on the earliest functions and evolution of the glucocorticoid receptor (GR), a steroid-activated transcription factor that plays a key role in the regulation of vertebrate physiology. Prior work showed that GR and its paralog, the mineralocorticoid receptor (MR), duplicated from a common ancestor roughly 450 million years ago; the ancestral functions were largely conserved in the MR lineage, but the functions of GRs - reduced sensitivity to all hormones and increased selectivity for glucocorticoids - are derived. Although the mechanisms for the evolution of glucocorticoid specificity have been identified, how reduced sensitivity evolved has not yet been studied. Here we report on the reconstruction of the deepest ancestor in the GR lineage (AncGR1) and demonstrate that GR's reduced sensitivity evolved before the acquisition of restricted hormone specificity, shortly after the GR-MR split. Using site-directed mutagenesis, X-ray crystallography, and computational analyses of protein stability to recapitulate and determine the effects of historical mutations, we show that AncGR1's reduced ligand sensitivity evolved primarily due to three key substitutions. Two large-effect mutations weakened hydrogen bonds and van der Waals interactions within the ancestral protein, reducing its stability. The degenerative effect of these two mutations is extremely strong, but a third permissive substitution, which has no apparent effect on function in the ancestral background and is likely to have occurred first, buffered the effects of the destabilizing mutations. Taken together, our results highlight the potentially creative role of substitutions that partially degrade protein structure and

  3. Ancestral genes can control the ability of horizontally acquired loci to confer new traits.

    Directory of Open Access Journals (Sweden)

    H Deborah Chen

    2011-07-01

    Full Text Available Horizontally acquired genes typically function as autonomous units conferring new abilities when introduced into different species. However, we reasoned that proteins preexisting in an organism might constrain the functionality of a horizontally acquired gene product if it operates on an ancestral pathway. Here, we determine how the horizontally acquired pmrD gene product activates the ancestral PmrA/PmrB two-component system in Salmonella enterica but not in the closely related bacterium Escherichia coli. The Salmonella PmrD protein binds to the phosphorylated PmrA protein (PmrA-P, protecting it from dephosphorylation by the PmrB protein. This results in transcription of PmrA-dependent genes, including those conferring polymyxin B resistance. We now report that the E. coli PmrD protein can activate the PmrA/PmrB system in Salmonella even though it cannot do it in E. coli, suggesting that these two species differ in an additional component controlling PmrA-P levels. We establish that the E. coli PmrB displays higher phosphatase activity towards PmrA-P than the Salmonella PmrB, and we identified a PmrB subdomain responsible for this property. Replacement of the E. coli pmrB gene with the Salmonella homolog was sufficient to render E. coli resistant to polymyxin B under PmrD-inducing conditions. Our findings provide a singular example whereby quantitative differences in the biochemical activities of orthologous ancestral proteins dictate the ability of a horizontally acquired gene product to confer species-specific traits. And they suggest that horizontally acquired genes can potentiate selection at ancestral loci.

  4. Hermeneutic Inquiry: Paying Heed to History and Hermes An Ancestral, Substantive, and Methodological Tale

    Directory of Open Access Journals (Sweden)

    Nancy J. Moules

    2002-09-01

    Full Text Available Hermeneutic or interpretive inquiry is a living tradition of interpretation with a rich legacy of theory, philosophy, and practice. This paper is not intended to be a treatise on the right way to view and practice this tradition, but an exploration of the legacies that inform the philosophy of practice as the author has taken it up. In this explication, the author examines the ancestral, philosophical, and methodological histories that inform a current practice of hermeneutic inquiry.

  5. Thermotolerant Yeast Strains Adapted by Laboratory Evolution Show Trade-Off at Ancestral Temperatures and Preadaptation to Other Stresses

    DEFF Research Database (Denmark)

    Caspeta, Luis; Nielsen, Jens

    2015-01-01

    adaptive laboratory evolution, we previously isolated seven Saccharomyces cerevisiae strains with improved growth at 40°C. Here, we show that genetic adaptations to high temperature caused a growth trade-off at ancestral temperatures, reduced cellular functions, and improved tolerance of other stresses...... in the ancestral strain. The latter is an advantageous attribute for acquiring thermotolerance and correlates with the reduction of yeast functions associated with loss of respiration capacity. This trait caused glycerol overproduction that was associated with the growth trade-off at ancestral temperatures...

  6. Preliminary appraisal of ground water in and near the ancestral Missouri River Valley, northeastern Montana

    Science.gov (United States)

    Levings, G.W.

    1986-01-01

    A preliminary appraisal was conducted in and near the ancestral Missouri River valley in northeastern Montana to describe the groundwater resources and to establish a data base for the area. The data base then could be used for future evaluation of possible changes in water levels or water quality. In this area, consolidated aquifers are the Upper Cretaceous Fox Hills-lower Hell Creek aquifer and the overlying Paleocene Fort Union Formation. Unconsolidated aquifers are Pleistocene terrace gravel and glacial deposits and Holocene alluvial deposits. Aquifers are recharged by precipitation, infiltration of streamflow, and possibly leakage from lakes and potholes. Groundwater moves from topographically higher areas to the ancestral valley, then along the ancestral valley to the southwest. Water is discharged from aquifers by evapotranspiration, springs and seeps, movement directly into streams and lakes, and from pumping wells. Average well yields are greatest for irrigation wells completed in outwash gravel (886 gallons/min). Eighteen wells were completed in various aquifers to monitor potential long-term changes in water levels and water quality. Measured water levels declined about 2 ft. or less during the study (1982-85). Chemical analysis of groundwater samples indicated that concentrations of some dissolved constituents exceeded U.S. Environmental Protection Agency standards for drinking water. (USGS)

  7. Something for nothing? Reconstruction of ancestral character states in asterinid sea star development.

    Science.gov (United States)

    Keever, Carson C; Hart, Michael W

    2008-01-01

    Traits from early development mapped onto phylogenetic trees can potentially offer insight into the evolutionary history of development by inferring the states of those characters among ancestors at nodes in the phylogeny. A key and often-overlooked aspect of such mapping is the underlying model of character evolution. Without a well-supported and realistic model ("nothing"), character mapping of ancestral traits onto phylogenetic trees might often return results ("something") that lack a sound basis. Here we reconsider a challenging case study in this area of evolutionary developmental biology: the inference of ancestral states for ecological and morphological characters in the reproduction and larval development of asterinid sea stars. We apply improved analytical methods to an expanded set of asterinid phylogenetic data and developmental character states. This analysis shows that the new methods might generally offer some independent insight into choice of a model of character evolution, but that in the specific case of asterinid sea stars the quantitative features of the model (especially the relative probabilities of different directions of change) have an important effect on the results. We suggest caution in applying ancestral state reconstructions in the absence of an independently corroborated model of character evolution, and highlight the need for such modeling in evolutionary developmental biology.

  8. A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference.

    Science.gov (United States)

    Gao, Nan; Zhang, Yan; Feng, Bing; Tang, Jijun

    2015-01-01

    Recent advances of technology have made it easy to obtain and compare whole genomes. Rearrangements of genomes through operations such as reversals and transpositions are rare events that enable researchers to reconstruct deep evolutionary history among species. Some of the popular methods need to search a large tree space for the best scored tree, thus it is desirable to have a fast and accurate method that can score a given tree efficiently. During the tree scoring procedure, the genomic structures of internal tree nodes are also provided, which provide important information for inferring ancestral genomes and for modeling the evolutionary processes. However, computing tree scores and ancestral genomes are very difficult and a lot of researchers have to rely on heuristic methods which have various disadvantages. In this paper, we describe the first genetic algorithm for tree scoring and ancestor inference, which uses a fitness function considering co-evolution, adopts different initial seeding methods to initialize the first population pool, and utilizes a sorting-based approach to realize evolution. Our extensive experiments show that compared with other existing algorithms, this new method is more accurate and can infer ancestral genomes that are much closer to the true ancestors.

  9. Distinct actions of ancestral vinclozolin and juvenile stress on neural gene expression in the male rat

    Directory of Open Access Journals (Sweden)

    Ross eGillette

    2015-03-01

    Full Text Available Exposure to the endocrine disrupting chemical vinclozolin during gestation of an F0 generation and/or chronic restraint stress during adolescence of the F3 descendants affects behavior, physiology, and gene expression in the brain. Genes related to the networks of growth factors, signaling peptides and receptors, steroid hormone receptors and enzymes, and epigenetic related factors were measured using quantitative polymerase chain reaction via Taqman low density arrays targeting 48 genes in the central amygdaloid nucleus, medial amygdaloid nucleus, medial preoptic area, lateral hypothalamus, and the ventromedial nucleus of the hypothalamus. We found that growth factors are particularly vulnerable to ancestral exposure in the central and medial amygdala; restraint stress during adolescence affected neural growth factors in the medial amygdala. Signaling peptides were affected by both ancestral exposure and stress during adolescence primarily in hypothalamic nuclei. Steroid hormone receptors and enzymes were strongly affected by restraint stress in the medial preoptic area. Epigenetic related genes were affected by stress in the ventromedial hypothalamus and by both ancestral exposure and stress during adolescence independently in the central amygdala. It is noteworthy that the lateral hypothalamus showed no effects of either manipulation. Gene expression is discussed in the context of behavioral and physiological measures previously published.

  10. Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity.

    Science.gov (United States)

    King, Benedict; Lee, Michael S Y

    2015-05-01

    Virtually all models for reconstructing ancestral states for discrete characters make the crucial assumption that the trait of interest evolves at a uniform rate across the entire tree. However, this assumption is unlikely to hold in many situations, particularly as ancestral state reconstructions are being performed on increasingly large phylogenies. Here, we show how failure to account for such variable evolutionary rates can cause highly anomalous (and likely incorrect) results, while three methods that accommodate rate variability yield the opposite, more plausible, and more robust reconstructions. The random local clock method, implemented in BEAST, estimates the position and magnitude of rate changes on the tree; split BiSSE estimates separate rate parameters for pre-specified clades; and the hidden rates model partitions each character state into a number of rate categories. Simulations show the inadequacy of traditional models when characters evolve with both asymmetry (different rates of change between states within a character) and heterotachy (different rates of character evolution across different clades). The importance of accounting for rate heterogeneity in ancestral state reconstruction is highlighted empirically with a new analysis of the evolution of viviparity in squamate reptiles, which reveal a predominance of forward (oviparous-viviparous) transitions and very few reversals. © The Author(s) 2015. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  11. Ancestral informative marker selection and population structure visualization using sparse Laplacian eigenfunctions.

    Directory of Open Access Journals (Sweden)

    Jun Zhang

    Full Text Available Identification of a small panel of population structure informative markers can reduce genotyping cost and is useful in various applications, such as ancestry inference in association mapping, forensics and evolutionary theory in population genetics. Traditional methods to ascertain ancestral informative markers usually require the prior knowledge of individual ancestry and have difficulty for admixed populations. Recently Principal Components Analysis (PCA has been employed with success to select SNPs which are highly correlated with top significant principal components (PCs without use of individual ancestral information. The approach is also applicable to admixed populations. Here we propose a novel approach based on our recent result on summarizing population structure by graph laplacian eigenfunctions, which differs from PCA in that it is geometric and robust to outliers. Our approach also takes advantage of the priori sparseness of informative markers in the genome. Through simulation of a ring population and the real global population sample HGDP of 650K SNPs genotyped in 940 unrelated individuals, we validate the proposed algorithm at selecting most informative markers, a small fraction of which can recover the similar underlying population structure efficiently. Employing a standard Support Vector Machine (SVM to predict individuals' continental memberships on HGDP dataset of seven continents, we demonstrate that the selected SNPs by our method are more informative but less redundant than those selected by PCA. Our algorithm is a promising tool in genome-wide association studies and population genetics, facilitating the selection of structure informative markers, efficient detection of population substructure and ancestral inference.

  12. Evolutionary history of versatile-lipases from Agaricales through reconstruction of ancestral structures.

    Science.gov (United States)

    Barriuso, Jorge; Martínez, María Jesús

    2017-01-03

    Fungal "Versatile carboxylic ester hydrolases" are enzymes with great biotechnological interest. Here we carried out a bioinformatic screening to find these proteins in genomes from Agaricales, by means of searching for conserved motifs, sequence and phylogenetic analysis, and three-dimensional modeling. Moreover, we reconstructed the molecular evolution of these enzymes along the time by inferring and analyzing the sequence of ancestral intermediate forms. The properties of the ancestral candidates are discussed on the basis of their three-dimensional structural models, the hydrophobicity of the lid, and the substrate binding intramolecular tunnel, revealing all of them featured properties of these enzymes. The evolutionary history of the putative lipases revealed an increase on the length and hydrophobicity of the lid region, as well as in the size of the substrate binding pocket, during evolution time. These facts suggest the enzymes' specialization towards certain substrates and their subsequent loss of promiscuity. These results bring to light the presence of different pools of lipases in fungi with different habitats and life styles. Despite the consistency of the data gathered from reconstruction of ancestral sequences, the heterologous expression of some of these candidates would be essential to corroborate enzymes' activities.

  13. Lack of Social Support Raises Stress Vulnerability in Rats with a History of Ancestral Stress.

    Science.gov (United States)

    Faraji, Jamshid; Soltanpour, Nabiollah; Lotfi, Hamid; Moeeini, Reza; Moharreri, Ali-Reza; Roudaki, Shabnam; Hosseini, S Abedin; Olson, David M; Abdollahi, Ali-Akbar; Soltanpour, Nasrin; Mohajerani, Majid H; Metz, Gerlinde A S

    2017-07-13

    Stress is a primary risk factor for psychiatric disorders. However, it is not fully understood why some stressed individuals are more vulnerable to psychiatric disorders than others. Here, we investigated whether multigenerational ancestral stress produces phenotypes that are sensitive to depression-like symptoms in rats. We also examined whether social isolation reveals potentially latent sensitivity to depression-like behaviours. F4 female rats born to a lineage of stressed mothers (F0-F3) received stress in adulthood while housed in pairs or alone. Social isolation during stress induced cognitive and psychomotor retardation only in rats exposed to ancestral stress. Social isolation also hampered the resilience of the hypothalamic-pituitary-adrenal axis to chronic stress and reduced hippocampal volume and brain-derived neurotrophic factor (BDNF) expression. Thus, synergy between social isolation and stress may unmask a latent history of ancestral stress, and raises vulnerability to mental health conditions. The findings support the notion that social support critically promotes stress coping and resilience.

  14. Geomorphological Characterization of Atenquique Basin in the Eastern Sector of the Volcan-Nevado-Colima, Jalisco, Mexico, As an Input to the Risk Assessment of Debris Flows.

    Science.gov (United States)

    Flores-Pena, S.; Suarez-Plascencia, C.

    2014-12-01

    The Atenquique river basin drains the eastern sector of the Volcanic Complex (VC) Volcan-Nevado de Colima, located on the border of the states of Jalisco and Colima. To use the digital geomorphological analysis 1:50000 scale mapping provided by INEGI and Landsat images, manipulating it in ArcGIS 10.2 developing the DEM that was the basis for morphometric characterization. The results show that the basin is divided into five sub-basins, with the main Atenquique (SAT) and Arroyo Seco (SAS), calculating the compactness coefficient (Kc) and the coefficient of sinuosity indicate that SAT is the most prone to floods due to straight and slightly sinuous channels. However, the density of dissection shows a more developed drainage network on the SAT, with slopes up to 84° and 600 m deep. The drainage basin has its source at an altitude of 4260 m and its mouth is in the Tuxpan River at 1040 m, which has a relative height of 2800 m; has a funnel-shaped elongated west-east, its outstanding average in the sector are Mountain 44° and 10° the piedmont. The SAT has a total area of 81.8 km2, with a dendritic river network, where the first order streams reach an 82.99%, and second order streams are the 13.4% of the total, these values show that most of the slopes of the basin have incipient development valleys and steep slopes. The basin has had 3 debris flows in recent 58 years; these are formed by large volumes of rock and mud that covered the town of Atenquique and paper mill located at the mouth of the Tuxpan River, caused deaths and significant economic damage. Its genesis is associated with the end of the summer rainy season, so he also worked in the hydrological analysis in order to determine the volume of runoff in the basin. The results of this work are used as input for the determining the risk levels in the study area, and may also be used by the municipality of Tuxpan, in order to define policies to manage risk and reduce future risks to the industrial town of

  15. Aplicación de las pruebas estadísticas de discordancia y significancia en la comparación del vulcanismo dacítico de la parte central de Cinturón Volcánico Mexicano

    OpenAIRE

    Lorena Díaz-González; René Cruz-Huicochea

    2013-01-01

    Nuestro objetivo es presentar una metodología estadística, junto con dos nuevos programas (DODESSYS y UDASYS). Para esta tarea compilamos una base de datos de 249 muestras de rocas dacitas provenientes de cuatro regiones del cinturón volcánico mexicano (MVB): volcanes monogenéticos de la Sierra de Chichinautzin y el Valle de México, estratovolcán Nevado de Toluca, estratovolcán Iztaccíhuatl y estratovolcán Popocatépetl. Las pruebas estadísticas de discordancia y significancia (ANOVA –ANalysis...

  16. The ancestral chromosomes of Dromiciops gliroides (Microbiotheridae), and its bearings on the karyotypic evolution of American marsupials

    OpenAIRE

    Su?rez-Villota, Elkin Y.; Haro, Ronie E.; Vargas, Rodrigo A.; Gallardo, Milton H.

    2016-01-01

    Background The low-numbered 14-chromosome karyotype of marsupials has falsified the fusion hypothesis claiming ancestrality from a 22-chromosome karyotype. Since the 14-chromosome condition of the relict Dromiciops gliroides is reminecent of ancestrality, its interstitial traces of past putative fusions and heterochromatin banding patterns were studied and added to available marsupials? cytogenetic data. Fluorescent in situ hybridization (FISH) and self-genomic in situ hybridization (self-GIS...

  17. Do Père David's deer lose memories of their ancestral predators?

    Science.gov (United States)

    Li, Chunwang; Yang, Xiaobo; Ding, Yuhua; Zhang, Linyuan; Fang, Hongxia; Tang, Songhua; Jiang, Zhigang

    2011-01-01

    Whether prey retains antipredator behavior after a long period of predator relaxation is an important question in predator-prey evolution. Père David's deer have been raised in enclosures for more than 1200 years and this isolation provides an opportunity to study whether Père David's deer still respond to the cues of their ancestral predators or to novel predators. We played back the sounds of crows (familiar sound) and domestic dogs (familiar non-predators), of tigers and wolves (ancestral predators), and of lions (potential naïve predator) to Père David's deer in paddocks, and blank sounds to the control group, and videoed the behavior of the deer during the experiment. We also showed life-size photo models of dog, leopard, bear, tiger, wolf, and lion to the deer and video taped their responses after seeing these models. Père David's deer stared at and approached the hidden loudspeaker when they heard the roars of tiger or lion. The deer listened to tiger roars longer, approached to tiger roars more and spent more time staring at the tiger model. The stags were also found to forage less in the trials of tiger roars than that of other sound playbacks. Additionally, it took longer for the deer to restore their normal behavior after they heard tiger roars, which was longer than that after the trial of other sound playbacks. Moreover, the deer were only found to walk away after hearing the sounds of tiger and wolf. Therefore, the tiger was probably the main predator for Père David's deer in ancient time. Our study implies that Père David's deer still retain the memories of the acoustic and visual cues of their ancestral predators in spite of the long term isolation from natural habitat.

  18. Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra

    Directory of Open Access Journals (Sweden)

    Azevedo Nathália F

    2012-03-01

    Full Text Available Abstract Background Xenarthra (sloths, armadillos and anteaters represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autosomes and X-chromosome specific probes on metaphases of two three-toed sloths: Bradypus torquatus and B. variegatus. These species represent the fourth of the five extant Xenarthra families to be studied with this approach. Results Eleven human chromosomes were conserved as one block in both B. torquatus and B. variegatus: (HSA 5, 6, 9, 11, 13, 14, 15, 17, 18, 20, 21 and the X chromosome. B. torquatus, three additional human chromosomes were conserved intact (HSA 1, 3 and 4. The remaining human chromosomes were represented by two or three segments on each sloth. Seven associations between human chromosomes were detected in the karyotypes of both B. torquatus and B. variegatus: HSA 3/21, 4/8, 7/10, 7/16, 12/22, 14/15 and 17/19. The ancestral Eutherian association 16/19 was not detected in the Bradypus species. Conclusions Our results together with previous reports enabled us to propose a hypothetical ancestral Xenarthran karyotype with 48 chromosomes that would differ from the proposed ancestral Eutherian karyotype by the presence of the association HSA 7/10 and by the split of HSA 8 into three blocks, instead of the two found in the Eutherian ancestor. These same chromosome features point to the monophyly of Xenarthra, making this the second supraorder of placental mammals to have a chromosome signature supporting its monophyly.

  19. Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra

    Science.gov (United States)

    2012-01-01

    Background Xenarthra (sloths, armadillos and anteaters) represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autosomes and X-chromosome specific probes on metaphases of two three-toed sloths: Bradypus torquatus and B. variegatus. These species represent the fourth of the five extant Xenarthra families to be studied with this approach. Results Eleven human chromosomes were conserved as one block in both B. torquatus and B. variegatus: (HSA 5, 6, 9, 11, 13, 14, 15, 17, 18, 20, 21 and the X chromosome). B. torquatus, three additional human chromosomes were conserved intact (HSA 1, 3 and 4). The remaining human chromosomes were represented by two or three segments on each sloth. Seven associations between human chromosomes were detected in the karyotypes of both B. torquatus and B. variegatus: HSA 3/21, 4/8, 7/10, 7/16, 12/22, 14/15 and 17/19. The ancestral Eutherian association 16/19 was not detected in the Bradypus species. Conclusions Our results together with previous reports enabled us to propose a hypothetical ancestral Xenarthran karyotype with 48 chromosomes that would differ from the proposed ancestral Eutherian karyotype by the presence of the association HSA 7/10 and by the split of HSA 8 into three blocks, instead of the two found in the Eutherian ancestor. These same chromosome features point to the monophyly of Xenarthra, making this the second supraorder of placental mammals to have a chromosome signature supporting its monophyly. PMID:22429690

  20. Contrasting determinants of abundance in ancestral and colonized ranges of an invasive brood parasite

    Science.gov (United States)

    Hahn, D.C.; O'Connor, R.J.; Scott, J. Michael; Heglund, Patricia J.; Morrison, Michael L.; Haufler, Jonathan B.; Wall, William A.

    2002-01-01

    Avian species distributions are typically regarded as constrained by spatially extensive variables such as climate, habitat, spatial patchiness, and microhabitat attributes. We hypothesized that the distribution of a brood parasite depends as strongly on host distribution patterns as on biophysical factors and examined this hypothesis with respect to the national distribution of the Brown-headed Cowbird (Molothrus ater). We applied a classification and regression (CART) analysis to data from the Breeding Bird Survey (BBS) and the Christmas Bird Count (CBC) and derived hierarchically organized statistical models of the influence of climate and weather, cropping and land use, and host abundance and distribution on the distribution of the Brown-headed Cowbird within the conterminous United States. The model accounted for 47.2% of the variation in cowbird incidence, and host abundance was the top predictor with an R2 of 18.9%. The other predictors identified by the model (crops 15.7%, weather and climate 14.3%, and region 9.6%) fit the ecological profile of this cowbird. We showed that host abundance was independent of these environmental predictors of cowbird distribution. At the regional scale host abundance played a very strong role in determining cowbird abundance in the cowbird?s colonized range east and west of their ancestral range in the Great Plains (26.6%). Crops were not a major predictor for cowbirds in their ancestral range, although they are the most important predictive factor (33%) for the grassland passerines that are the cowbird?s ancestral hosts. Consequently our findings suggest that the distribution of hosts does indeed take precedence over habitat attributes in shaping the cowbird?s distribution at a national scale, within an envelope of constraint set by biophysical factors.

  1. Analysis of ancestral and functionally relevant CD5 variants in systemic lupus erythematosus patients.

    Directory of Open Access Journals (Sweden)

    Maria Carmen Cenit

    Full Text Available CD5 plays a crucial role in autoimmunity and is a well-established genetic risk factor of developing RA. Recently, evidence of positive selection has been provided for the CD5 Pro224-Val471 haplotype in East Asian populations. The aim of the present work was to further analyze the functional relevance of non-synonymous CD5 polymorphisms conforming the ancestral and the newly derived haplotypes (Pro224-Ala471 and Pro224-Val471, respectively as well as to investigate the potential role of CD5 on the development of SLE and/or SLE nephritis.The CD5 SNPs rs2241002 (C/T; Pro224Leu and rs2229177 (C/T; Ala471Val were genotyped using TaqMan allelic discrimination assays in a total of 1,324 controls and 681 SLE patients of Spanish origin. In vitro analysis of CD3-mediated T cell proliferative and cytokine response profiles of healthy volunteers homozygous for the above mentioned CD5 haplotypes were also analyzed.T-cell proliferation and cytokine release were significantly increased showing a bias towards to a Th2 profile after CD3 cross-linking of peripheral mononuclear cells from healthy individuals homozygous for the ancestral Pro224-Ala471 (CC haplotype, compared to the more recently derived Pro224-Val471 (CT. The same allelic combination was statistically associated with Lupus nephritis.The ancestral Ala471 CD5 allele confers lymphocyte hyper-responsiveness to TCR/CD3 cross-linking and is associated with nephritis in SLE patients.

  2. Rate heterogeneity across Squamata, misleading ancestral state reconstruction and the importance of proper null model specification.

    Science.gov (United States)

    Harrington, S; Reeder, T W

    2017-02-01

    The binary-state speciation and extinction (BiSSE) model has been used in many instances to identify state-dependent diversification and reconstruct ancestral states. However, recent studies have shown that the standard procedure of comparing the fit of the BiSSE model to constant-rate birth-death models often inappropriately favours the BiSSE model when diversification rates vary in a state-independent fashion. The newly developed HiSSE model enables researchers to identify state-dependent diversification rates while accounting for state-independent diversification at the same time. The HiSSE model also allows researchers to test state-dependent models against appropriate state-independent null models that have the same number of parameters as the state-dependent models being tested. We reanalyse two data sets that originally used BiSSE to reconstruct ancestral states within squamate reptiles and reached surprising conclusions regarding the evolution of toepads within Gekkota and viviparity across Squamata. We used this new method to demonstrate that there are many shifts in diversification rates across squamates. We then fit various HiSSE submodels and null models to the state and phylogenetic data and reconstructed states under these models. We found that there is no single, consistent signal for state-dependent diversification associated with toepads in gekkotans or viviparity across all squamates. Our reconstructions show limited support for the recently proposed hypotheses that toepads evolved multiple times independently in Gekkota and that transitions from viviparity to oviparity are common in Squamata. Our results highlight the importance of considering an adequate pool of models and null models when estimating diversification rate parameters and reconstructing ancestral states. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

  3. Ancestral benzo[a]pyrene exposure affects bone integrity in F3 adult fish (Oryzias latipes).

    Science.gov (United States)

    Seemann, Frauke; Jeong, Chang-Bum; Zhang, Ge; Wan, Miles Teng; Guo, Baosheng; Peterson, Drew Ryan; Lee, Jae-Seong; Au, Doris Wai-Ting

    2017-02-01

    Benzo[a]pyrene (BaP) at an environmentally relevant concentration (1μg/L) has previously been shown to affect bone development in a transgenerational manner in F3 medaka (Oryzias latipes) larvae (17dph). Here, we provide novel histomorphometric data demonstrating that the impaired bone formation at an early life stage is not recoverable and can result in a persistent transgenerational impairment of bone metabolism in F3 adult fish. A decrease in bone thickness and the occurrence of microcracks in ancestrally BaP-treated adult male fish (F3) were revealed by MicroCt measurement and histopathological analysis. The expression of twenty conserved bone miRNAs were screened in medaka and their relative expression (in the F3 ancestral BaP treatment vs the F3 control fish) were determined by quantitative real-time PCR. Attempt was made to link bone miRNA expression with the potential target bone mRNA expression in medaka. Five functional pairs of mRNA/miRNA were identified (Osx/miR-214, Col2a1b/miR-29b, Runx2/miR-204, Sox9b/miR-199a-3p, APC/miR-27b). Unique knowledge of bone-related miRNA expression in medaka in response to ancestral BaP-exposure in the F3 generation is presented. From the ecological risk assessment perspective, BaP needs to be regarded as a transgenerational skeletal toxicant which exerts a far-reaching impact on fish survival and fitness. Given that the underlying mechanisms of cartilage/bone formation are conserved between medaka and mammals, the results may also shed light on the potential transgenerational effect of BaP on skeletal disorders in mammals/humans. Copyright © 2016 Elsevier B.V. All rights reserved.

  4. The mammary gland-specific marsupial ELP and eutherian CTI share a common ancestral gene

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    Pharo Elizabeth A

    2012-06-01

    Full Text Available Abstract Background The marsupial early lactation protein (ELP gene is expressed in the mammary gland and the protein is secreted into milk during early lactation (Phase 2A. Mature ELP shares approximately 55.4% similarity with the colostrum-specific bovine colostrum trypsin inhibitor (CTI protein. Although ELP and CTI both have a single bovine pancreatic trypsin inhibitor (BPTI-Kunitz domain and are secreted only during the early lactation phases, their evolutionary history is yet to be investigated. Results Tammar ELP was isolated from a genomic library and the fat-tailed dunnart and Southern koala ELP genes cloned from genomic DNA. The tammar ELP gene was expressed only in the mammary gland during late pregnancy (Phase 1 and early lactation (Phase 2A. The opossum and fat-tailed dunnart ELP and cow CTI transcripts were cloned from RNA isolated from the mammary gland and dog CTI from cells in colostrum. The putative mature ELP and CTI peptides shared 44.6%-62.2% similarity. In silico analyses identified the ELP and CTI genes in the other species examined and provided compelling evidence that they evolved from a common ancestral gene. In addition, whilst the eutherian CTI gene was conserved in the Laurasiatherian orders Carnivora and Cetartiodactyla, it had become a pseudogene in others. These data suggest that bovine CTI may be the ancestral gene of the Artiodactyla-specific, rapidly evolving chromosome 13 pancreatic trypsin inhibitor (PTI, spleen trypsin inhibitor (STI and the five placenta-specific trophoblast Kunitz domain protein (TKDP1-5 genes. Conclusions Marsupial ELP and eutherian CTI evolved from an ancestral therian mammal gene before the divergence of marsupials and eutherians between 130 and 160 million years ago. The retention of the ELP gene in marsupials suggests that this early lactation-specific milk protein may have an important role in the immunologically naïve young of these species.

  5. Do Père David's deer lose memories of their ancestral predators?

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    Chunwang Li

    Full Text Available Whether prey retains antipredator behavior after a long period of predator relaxation is an important question in predator-prey evolution. Père David's deer have been raised in enclosures for more than 1200 years and this isolation provides an opportunity to study whether Père David's deer still respond to the cues of their ancestral predators or to novel predators. We played back the sounds of crows (familiar sound and domestic dogs (familiar non-predators, of tigers and wolves (ancestral predators, and of lions (potential naïve predator to Père David's deer in paddocks, and blank sounds to the control group, and videoed the behavior of the deer during the experiment. We also showed life-size photo models of dog, leopard, bear, tiger, wolf, and lion to the deer and video taped their responses after seeing these models. Père David's deer stared at and approached the hidden loudspeaker when they heard the roars of tiger or lion. The deer listened to tiger roars longer, approached to tiger roars more and spent more time staring at the tiger model. The stags were also found to forage less in the trials of tiger roars than that of other sound playbacks. Additionally, it took longer for the deer to restore their normal behavior after they heard tiger roars, which was longer than that after the trial of other sound playbacks. Moreover, the deer were only found to walk away after hearing the sounds of tiger and wolf. Therefore, the tiger was probably the main predator for Père David's deer in ancient time. Our study implies that Père David's deer still retain the memories of the acoustic and visual cues of their ancestral predators in spite of the long term isolation from natural habitat.

  6. Allelic Lineages of the Ficolin Genes (FCNs) Are Passed from Ancestral to Descendant Primates

    DEFF Research Database (Denmark)

    Hummelshøj, Tina; Nissen, Janna; Fog, Lea Munthe

    2011-01-01

    The ficolins recognize carbohydrates and acetylated compounds on microorganisms and dying host cells and are able to activate the lectin pathway of the complement system. In humans, three ficolin genes have been identified: FCN1, FCN2 and FCN3, which encode ficolin-1, ficolin-2 and ficolin-3, res...... serum. Taken together all the FCN genes show the same characteristics in lower and higher primates. The existence of trans-species polymorphisms suggests that different FCN allelic lineages may be passed from ancestral to descendant species....

  7. Allelic lineages of the ficolin genes (FCNs) are passed from ancestral to descendant primates

    DEFF Research Database (Denmark)

    Hummelshøj, Tina; Nissen, Janna; Munthe-Fog, Lea

    2011-01-01

    The ficolins recognize carbohydrates and acetylated compounds on microorganisms and dying host cells and are able to activate the lectin pathway of the complement system. In humans, three ficolin genes have been identified: FCN1, FCN2 and FCN3, which encode ficolin-1, ficolin-2 and ficolin-3, res...... serum. Taken together all the FCN genes show the same characteristics in lower and higher primates. The existence of trans-species polymorphisms suggests that different FCN allelic lineages may be passed from ancestral to descendant species....

  8. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes

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    Zhebentyayeva Tatyana

    2006-04-01

    Full Text Available Abstract Background Due to the lack of availability of large genomic sequences for peach or other Prunus species, the degree of synteny conservation between the Prunus species and Arabidopsis has not been systematically assessed. Using the recently available peach EST sequences that are anchored to Prunus genetic maps and to peach physical map, we analyzed the extent of conserved synteny between the Prunus and the Arabidopsis genomes. The reconstructed pseudo-ancestral Arabidopsis genome, existed prior to the proposed recent polyploidy event, was also utilized in our analysis to further elucidate the evolutionary relationship. Results We analyzed the synteny conservation between the Prunus and the Arabidopsis genomes by comparing 475 peach ESTs that are anchored to Prunus genetic maps and their Arabidopsis homologs detected by sequence similarity. Microsyntenic regions were detected between all five Arabidopsis chromosomes and seven of the eight linkage groups of the Prunus reference map. An additional 1097 peach ESTs that are anchored to 431 BAC contigs of the peach physical map and their Arabidopsis homologs were also analyzed. Microsyntenic regions were detected in 77 BAC contigs. The syntenic regions from both data sets were short and contained only a couple of conserved gene pairs. The synteny between peach and Arabidopsis was fragmentary; all the Prunus linkage groups containing syntenic regions matched to more than two different Arabidopsis chromosomes, and most BAC contigs with multiple conserved syntenic regions corresponded to multiple Arabidopsis chromosomes. Using the same peach EST datasets and their Arabidopsis homologs, we also detected conserved syntenic regions in the pseudo-ancestral Arabidopsis genome. In many cases, the gene order and content of peach regions was more conserved in the ancestral genome than in the present Arabidopsis region. Statistical significance of each syntenic group was calculated using simulated

  9. Sustainability of ancestral methods of agricultural production in Perú: ¿keep or replace?

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    Dani Eduardo Vargas Huanca

    2016-09-01

    Full Text Available Based on the success of some Andean products such as quinoa, potatoes or maca in international food trade and the growing environmental degradation facing developing countries, resulting from intensive exploitation activities; Our research seeks to show the trend that is assumed from the academic / scientific community and public officials in the food sector in Peru, against the need to maintain sustainable various ancestral modes of agricultural production (case quinoa, for it analyze quantitative and qualitative obtained from public institutions and Peruvian universities.

  10. Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure

    Science.gov (United States)

    DeGiorgio, Michael; Rosenberg, Noah A.

    2016-01-01

    In the last few years, several statistically consistent consensus methods for species tree inference have been devised that are robust to the gene tree discordance caused by incomplete lineage sorting in unstructured ancestral populations. One source of gene tree discordance that has only recently been identified as a potential obstacle for phylogenetic inference is ancestral population structure. In this article, we describe a general model of ancestral population structure, and by relying on a single carefully constructed example scenario, we show that the consensus methods Democratic Vote, STEAC, STAR, R* Consensus, Rooted Triple Consensus, Minimize Deep Coalescences, and Majority-Rule Consensus are statistically inconsistent under the model. We find that among the consensus methods evaluated, the only method that is statistically consistent in the presence of ancestral population structure is GLASS/Maximum Tree. We use simulations to evaluate the behavior of the various consensus methods in a model with ancestral population structure, showing that as the number of gene trees increases, estimates on the basis of GLASS/Maximum Tree approach the true species tree topology irrespective of the level of population structure, whereas estimates based on the remaining methods only approach the true species tree topology if the level of structure is low. However, through simulations using species trees both with and without ancestral population structure, we show that GLASS/Maximum Tree performs unusually poorly on gene trees inferred from alignments with little information. This practical limitation of GLASS/Maximum Tree together with the inconsistency of other methods prompts the need for both further testing of additional existing methods and development of novel methods under conditions that incorporate ancestral population structure. PMID:27086043

  11. Trace elements in South America aerosol during 20th century inferred from a Nevado Illimani ice core, Eastern Bolivian Andes (6350 m asl

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    A. Correia

    2003-01-01

    Full Text Available A 137 m ice core drilled in 1999 from Eastern Bolivian Andes at the summit of Nevado Illimani (16º 37' S, 67º 46' W, 6350 m asl was analyzed at high temporal resolution, allowing a characterization of trace elements in Andean aerosol trapped in the ice during the 20th century. The upper 50 m of the ice core were dated by multi-proxy analysis of stable isotopes (d18O and d2H, 137Cs and Ca+2 content, electrical conductivity, and insoluble microparticle content, together with reference historical horizons from atmospheric nuclear tests and known volcanic eruptions. This 50 m section corresponds to a record of environmental variations spanning about 80 years from 1919 to 1999. It was cut in 744 sub-samples under laminar flow in a clean bench, which were analyzed by Ion Chromatography for major ionic concentration, by a particle counter for insoluble aerosol content, and by Inductively Coupled Plasma Mass Spectrometry (ICP-MS for the concentration of 45 chemical species from Li to U. This paper focuses on results of trace element concentrations measured by ICP-MS. The high temporal resolution used in the analyses allowed classifying samples as belonging to dry or wet seasons. During wet season elemental concentrations are low and samples show high crustal enrichment factors. During dry seasons the situation is opposite, with high elemental concentrations and low crustal enrichments. For example, with salt lakes as main sources in the region, average Li concentration during the 20th century is 0.035 and 0.90 ng g-1 for wet and dry seasons, respectively. Illimani average seasonal concentration ranges cover the spectrum of elemental concentration measurements at another Andean ice core site (Sajama for most soil-related elements. Regional crustal dust load in the deposits was found to be overwhelming during dry season, obfuscating the contribution of biomass burning material. Marked temporal trends from the onset of 20th century to more recent years

  12. Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species.

    Science.gov (United States)

    McKibbin, Rowan S; Wilkinson, Mark D; Bailey, Paul C; Flintham, John E; Andrew, Lucy M; Lazzeri, Paul A; Gale, Mike D; Lenton, John R; Holdsworth, Michael J

    2002-07-23

    The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development, simultaneously activating embryo maturation and repressing germination. Hexaploid bread wheat (Triticum aestivum) caryopses are characterized by relatively weak embryo dormancy and are susceptible to preharvest sprouting (PHS), a phenomenon that is phenotypically similar to the maize vp1 mutation. Analysis of Vp-1 transcript structure in wheat embryos during grain development showed that each homeologue produces cytoplasmic mRNAs of different sizes. The majority of transcripts are spliced incorrectly, contain insertions of intron sequences or deletions of coding region, and do not have the capacity to encode full-length proteins. Several VP-1-related lower molecular weight protein species were present in wheat embryo nuclei. Embryos of a closely related tetraploid species (Triticum turgidum) and ancestral diploids also contained misspliced Vp-1 transcripts that were structurally similar or identical to those found in modern hexaploid wheat, which suggests that compromised structure and expression of Vp-1 transcripts in modern wheat are inherited from ancestral species. Developing embryos from transgenic wheat grains expressing the Avena fatua Vp1 gene showed enhanced responsiveness to applied abscisic acid compared with the control. In addition, ripening ears of transgenic plants were less susceptible to PHS. Our results suggest that missplicing of wheat Vp-1 genes contributes to susceptibility to PHS in modern hexaploid wheat varieties and identifies a possible route to increase resistance to this environmentally triggered disorder.

  13. Ancestral state reconstruction infers phytopathogenic origins of sooty blotch and flyspeck fungi on apple.

    Science.gov (United States)

    Ismail, Siti Izera; Batzer, Jean Carlson; Harrington, Thomas C; Crous, Pedro W; Lavrov, Dennis V; Li, Huanyu; Gleason, Mark L

    2016-01-01

    Members of the sooty blotch and flyspeck (SBFS) complex are epiphytic fungi in the Ascomycota that cause economically damaging blemishes of apples worldwide. SBFS fungi are polyphyletic, but approx. 96% of SBFS species are in the Capnodiales. Evolutionary origins of SBFS fungi remain unclear, so we attempted to infer their origins by means of ancestral state reconstruction on a phylogenetic tree built utilizing genes for the nuc 28S rDNA (approx. 830 bp from near the 59 end) and the second largest subunit of RNA polymerase II (RPB2). The analyzed taxa included the well-known genera of SBFS as well as non-SBFS fungi from seven families within the Capnodiales. The non-SBFS taxa were selected based on their distinct ecological niches, including plant-parasitic and saprophytic species. The phylogenetic analyses revealed that most SBFS species in the Capnodiales are closely related to plant-parasitic fungi. Ancestral state reconstruction provided strong evidence that plant-parasitic fungi were the ancestors of the major SBFS lineages. Knowledge gained from this study may help to better understand the ecology and evolution of epiphytic fungi. © 2016 by The Mycological Society of America.

  14. Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations.

    Science.gov (United States)

    Omberg, Larsson; Salit, Jacqueline; Hackett, Neil; Fuller, Jennifer; Matthew, Rebecca; Chouchane, Lotfi; Rodriguez-Flores, Juan L; Bustamante, Carlos; Crystal, Ronald G; Mezey, Jason G

    2012-06-26

    Populations of the Arabian Peninsula have a complex genetic structure that reflects waves of migrations including the earliest human migrations from Africa and eastern Asia, migrations along ancient civilization trading routes and colonization history of recent centuries. Here, we present a study of genome-wide admixture in this region, using 156 genotyped individuals from Qatar, a country located at the crossroads of these migration patterns. Since haplotypes of these individuals could have originated from many different populations across the world, we have developed a machine learning method "SupportMix" to infer loci-specific genomic ancestry when simultaneously analyzing many possible ancestral populations. Simulations show that SupportMix is not only more accurate than other popular admixture discovery tools but is the first admixture inference method that can efficiently scale for simultaneous analysis of 50-100 putative ancestral populations while being independent of prior demographic information. By simultaneously using the 55 world populations from the Human Genome Diversity Panel, SupportMix was able to extract the fine-scale ancestry of the Qatar population, providing many new observations concerning the ancestry of the region. For example, as well as recapitulating the three major sub-populations in Qatar, composed of mainly Arabic, Persian, and African ancestry, SupportMix additionally identifies the specific ancestry of the Persian group to populations sampled in Greater Persia rather than from China and the ancestry of the African group to sub-Saharan origin and not Southern African Bantu origin as previously thought.

  15. A phylogenetic Kalman filter for ancestral trait reconstruction using molecular data.

    Science.gov (United States)

    Lartillot, Nicolas

    2014-02-15

    Correlation between life history or ecological traits and genomic features such as nucleotide or amino acid composition can be used for reconstructing the evolutionary history of the traits of interest along phylogenies. Thus far, however, such ancestral reconstructions have been done using simple linear regression approaches that do not account for phylogenetic inertia. These reconstructions could instead be seen as a genuine comparative regression problem, such as formalized by classical generalized least-square comparative methods, in which the trait of interest and the molecular predictor are represented as correlated Brownian characters coevolving along the phylogeny. Here, a Bayesian sampler is introduced, representing an alternative and more efficient algorithmic solution to this comparative regression problem, compared with currently existing generalized least-square approaches. Technically, ancestral trait reconstruction based on a molecular predictor is shown to be formally equivalent to a phylogenetic Kalman filter problem, for which backward and forward recursions are developed and implemented in the context of a Markov chain Monte Carlo sampler. The comparative regression method results in more accurate reconstructions and a more faithful representation of uncertainty, compared with simple linear regression. Application to the reconstruction of the evolution of optimal growth temperature in Archaea, using GC composition in ribosomal RNA stems and amino acid composition of a sample of protein-coding genes, confirms previous findings, in particular, pointing to a hyperthermophilic ancestor for the kingdom. The program is freely available at www.phylobayes.org.

  16. Evolution of domain promiscuity in eukaryotic genomes—a perspective from the inferred ancestral domain architectures†

    Science.gov (United States)

    Cohen-Gihon, Inbar; Fong, Jessica H.; Sharan, Roded; Nussinov, Ruth

    2012-01-01

    Most eukaryotic proteins are composed of two or more domains. These assemble in a modular manner to create new proteins usually by the acquisition of one or more domains to an existing protein. Promiscuous domains which are found embedded in a variety of proteins and co-exist with many other domains are of particular interest and were shown to have roles in signaling pathways and mediating network communication. The evolution of domain promiscuity is still an open problem, mostly due to the lack of sequenced ancestral genomes. Here we use inferred domain architectures of ancestral genomes to trace the evolution of domain promiscuity in eukaryotic genomes. We find an increase in average promiscuity along many branches of the eukaryotic tree. Moreover, domain promiscuity can proceed at almost a steady rate over long evolutionary time or exhibit lineage-specific acceleration. We also observe that many signaling and regulatory domains gained domain promiscuity around the Bilateria divergence. In addition we show that those domains that played a role in the creation of two body axes and existed before the divergence of the bilaterians from fungi/metazoan achieve a boost in their promiscuities during the bilaterian evolution. PMID:21127809

  17. Evolution of domain promiscuity in eukaryotic genomes--a perspective from the inferred ancestral domain architectures.

    Science.gov (United States)

    Cohen-Gihon, Inbar; Fong, Jessica H; Sharan, Roded; Nussinov, Ruth; Przytycka, Teresa M; Panchenko, Anna R

    2011-03-01

    Most eukaryotic proteins are composed of two or more domains. These assemble in a modular manner to create new proteins usually by the acquisition of one or more domains to an existing protein. Promiscuous domains which are found embedded in a variety of proteins and co-exist with many other domains are of particular interest and were shown to have roles in signaling pathways and mediating network communication. The evolution of domain promiscuity is still an open problem, mostly due to the lack of sequenced ancestral genomes. Here we use inferred domain architectures of ancestral genomes to trace the evolution of domain promiscuity in eukaryotic genomes. We find an increase in average promiscuity along many branches of the eukaryotic tree. Moreover, domain promiscuity can proceed at almost a steady rate over long evolutionary time or exhibit lineage-specific acceleration. We also observe that many signaling and regulatory domains gained domain promiscuity around the Bilateria divergence. In addition we show that those domains that played a role in the creation of two body axes and existed before the divergence of the bilaterians from fungi/metazoan achieve a boost in their promiscuities during the bilaterian evolution.

  18. Evidence for Ancestral Programming of Resilience in a Two-Hit Stress Model

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    Jamshid Faraji

    2017-05-01

    Full Text Available In a continuously stressful environment, the effects of recurrent prenatal stress (PS may accumulate across generations and alter stress vulnerability and resilience. Here, we report in female rats that a family history of recurrent ancestral PS facilitates certain aspects of movement performance, and that these benefits are abolished by the experience of a second hit, induced by a silent ischemia during adulthood. Female F4-generation rats with and without a family history of cumulative multigenerational PS (MPS were tested for skilled motor function before and after the induction of a minor ischemic insult by endothelin-1 infusion into the primary motor cortex. MPS resulted in improved skilled motor abilities and blunted hypothalamic-pituitary-adrenal (HPA axis function compared to non-stressed rats. Deep sequencing revealed downregulation of miR-708 in MPS rats along with upregulation of its predicted target genes Mapk10 and Rasd2. Through miR-708 stress may regulate mitogen-activated protein kinase (MAPK pathway activity. Hair trace elemental analysis revealed an increased Na/K ratio, which suggests a chronic shift in adrenal gland function. The ischemic lesion activated the HPA axis in MPS rats only; the lesion, however, abolished the advantage of MPS in skilled reaching. The findings indicate that MPS generates adaptive flexibility in movement, which is challenged by a second stressor, such as a neuropathological condition. Thus, a second “hit” by a stressor may limit behavioral flexibility and neural plasticity associated with ancestral stress.

  19. Bearing the unbearable: ancestral transmission through dreams and moving metaphors in the analtyic field.

    Science.gov (United States)

    Pickering, Judith

    2012-11-01

    This paper explores how untold and unresolved intergenerational trauma may be transmitted through unconscious channels of communication, manifesting in the dreams of descendants. Unwitting carriers for that which was too horrific for their ancestors to bear, descendants may enter analysis through an unconscious need to uncover past secrets, piece together ancestral histories before the keys to comprehending their terrible inheritance die with their forebears. They seek the relational containment of the analytic relationship to provide psychological conditions to bear the unbearable, know the unknowable, speak the unspeakable and redeem the unredeemable. In the case of 'Rachael', initial dreams gave rise to what Hobson (1984) called 'moving metaphors of self' in the analytic field. Dream imagery, projective and introjective processes in the transference-countertransference dynamics gradually revealed an unknown ancestral history. I clarify the back and forth process from dream to waking dream thoughts to moving metaphors and differentiate the moving metaphor from a living symbol. I argue that the containment of the analytic relationship nested within the security of the analytic space is a necessary precondition for such healing processes to occur. © 2012, The Society of Analytical Psychology.

  20. Sistema médico tradicional- ancestral en el territorio de los Pastos Resguardo Indígena de Túquerres-Narino, Colombia

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    Sandra Patricia Portilla Rodríguez

    2017-01-01

    Full Text Available Se ha analizado el sistema médico tradicional en el territorio de los Pastos, Resguardo Indígena de Túquerres, Nariño, Colombia. Para los indígenas, la salud es producto de la relación armónica entre naturaleza, seres humanos y el mundo espiritual, al romperse uno de estos tres nexos, el cuerpo se enferma afectando tanto al individuo como a la familia. El enfoque fue hermenéutico en la comprensión de las prácticas de los comunitarios relacionadas con la medicina tradicional. La unidad de estudio fue la totalidad de médicos tradicionales (19, entre los cuales hay hierbateros, espirituales, yageceros y parteras. Los resultados han reflejado que la práctica de la medicina tradicional, que en el caso del Estado, algunos sectores de la Iglesia e Instituciones prestadoras de salud no aceptan esta práctica ancestral, persiguiendo al médico tradicional acusándolo de hechicero, embustero y mentiroso. Existen dos categorías de médicos tradicionales: los espirituales y los del cuerpo. Entre las más enfermedades más frecuentes del cuerpo está la gastritis, la úlcera, apendicitis, mal de vesícula, cáncer, fracturas y luxaciones. Entre las espirituales: el espanto, el mal viento, el miado del cueche, el maleficio y enfermedades que denominan “del alma”, como la envidia, la soledad, la tristeza, el egoísmo. El tratamiento va acompañado con un ritual. Para las espirituales se purifica a la persona y el entorno con sahumerio, se invoca a Dios y naturaleza, sol, agua, y los espíritus mayores. La percepción comunal: consideran que la medicina tradicional es una alternativa para la salud del cuerpo y el espíritu a través de plantas.

  1. Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model

    DEFF Research Database (Denmark)

    Mailund, Thomas; Dutheil, Julien; Hobolth, Asger

    2011-01-01

    event has occurred to split them apart. The size of these segments of constant divergence depends on the recombination rate, but also on the speciation time, the effective population size of the ancestral population, as well as demographic effects and selection. Thus, inference of these parameters may......, and the ancestral effective population size. The model is efficient enough to allow inference on whole-genome data sets. We first investigate the power and consistency of the model with coalescent simulations and then apply it to the whole-genome sequences of the two orangutan sub-species, Bornean (P. p. pygmaeus......) and Sumatran (P. p. abelii) orangutans from the Orangutan Genome Project. We estimate the speciation time between the two sub-species to be thousand years ago and the effective population size of the ancestral orangutan species to be , consistent with recent results based on smaller data sets. We also report...

  2. Breadth of T cell responses after immunization with adenovirus vectors encoding ancestral antigens or polyvalent papillomavirus antigens

    DEFF Research Database (Denmark)

    Ragonnaud, Emeline; Pedersen, Anders Gorm; Holst, Peter Johannes

    2017-01-01

    - either by inducing cross-reactive T cells or by administering a polyvalent vaccine. To test these strategies, we designed 3 ancestral and 2 circulating sequences based on the two domains of the E1 and E2 proteins of papillomaviruses (PVs) that exhibit the highest degree of conservation in comparison...... circulating strains and a putative ancestor of oncogenic HPVs, we showed that the ancestral vaccine antigen has to be approximately 90% identical to the circulating PVs before a marked drop of ~90% mean CD8+ T cell responses ensues. Interestingly, the combination of two or three type-specific PV vaccines did...... not induce a significant decrease of the CD8+ T cell response to the individual targeted PV types. Polyvalent HPV vaccine based on the E1 and E2 proteins seem to be capable of triggering responses towards more than one type of PV while the cross-reactivity of ancestral vaccine seems insufficient...

  3. Petrologic, tectonic, and metallogenic evolution of the southern segment of the ancestral Cascades magmatic arc, California and Nevada

    Science.gov (United States)

    du Bray, Edward A.; John, David A.; Cousens, Brian L.

    2013-01-01

    Ongoing arc magmatism along western North America was preceded by ancestral arc magmatism that began ca. 45 Ma and evolved into modern arc volcanism. The southern ancestral arc segment, active from ca. 30 to 3 Ma, adjoins the northern segment in northern California across a proposed subducted slab tear. The east edge of the Walker Lane approximates the east edge of the southern arc whose products, mostly erupted from stratovolcanoes and lava dome complexes arrayed along the crest of the ancestral arc, extend down the west flank of the Sierra Nevada. Southern arc segment rocks include potassic, calc-alkaline intermediate- to silicic-composition lava flows, lava dome complexes, and associated volcaniclastic deposits.

  4. The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis

    Science.gov (United States)

    Fondi, Marco; Brilli, Matteo; Emiliani, Giovanni; Paffetti, Donatella; Fani, Renato

    2007-01-01

    Background It is generally assumed that primordial cells had small genomes with simple genes coding for enzymes able to react with a wide range of chemically related substrates, interconnecting different metabolic routes. New genes coding for enzymes with a narrowed substrate specificity arose by paralogous duplication(s) of ancestral ones and evolutionary divergence. In this way new metabolic pathways were built up by primordial cells. Useful hints to disclose the origin and evolution of ancestral metabolic routes and their interconnections can be obtained by comparing sequences of enzymes involved in the same or different metabolic routes. From this viewpoint, the lysine, arginine, and leucine biosynthetic routes represent very interesting study-models. Some of the lys, arg and leu genes are paralogs; this led to the suggestion that their ancestor genes might interconnect the three pathways. The aim of this work was to trace the evolutionary pathway leading to the appearance of the extant biosynthetic routes and to try to disclose the interrelationships existing between them and other pathways in the early stages of cellular evolution. Results The comparative analysis of the genes involved in the biosynthesis of lysine, leucine, and arginine, their phylogenetic distribution and analysis revealed that the extant metabolic "grids" and their interrelationships might be the outcome of a cascade of duplication of ancestral genes that, according to the patchwork hypothesis, coded for unspecific enzymes able to react with a wide range of substrates. These genes belonged to a single common pathway in which the three biosynthetic routes were highly interconnected between them and also to methionine, threonine, and cell wall biosynthesis. A possible evolutionary model leading to the extant metabolic scenarios was also depicted. Conclusion The whole body of data obtained in this work suggests that primordial cells synthesized leucine, lysine, and arginine through a single

  5. ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

    DEFF Research Database (Denmark)

    Li, Ruiqiang; Ye, Jia; Li, Songgang

    2005-01-01

    We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist at high copy numbers across the genome and must not be so old that they are no longer recognizable...... in comparison to their ancestral sequences. Tested on the japonica rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences. Udgivelsesdato: 2005-Sep...

  6. Effects of ancestral x irradiation followed by random mating on body weight of rats

    International Nuclear Information System (INIS)

    Gianola, D.; Chapman, A.B.; Rutledge, J.J.

    1977-01-01

    Effects of nine generations of 450R per generation of ancestral spermatogonial x irradiation of inbred rats on body weight were examined. After six generations of random mating (avoiding inbreeding) following the termination of irradiation, descendants of irradiated males (R) were significantly lighter than their controls (C) at 3 and 6 weeks, but not at 10 weeks of age. However, differences in growth between R and C populations were small. Among-litter and within-litter variance estimates were generally larger in the R lines than in the C lines, suggesting that selection responses would be greater in R than in C lines. In conjunction with previous evidence--obtained during the irradiation phase of the experiment--this suggested that more rapid response to selection for 6-week body weight, in particular, might accrue in the R lines

  7. A phenol-enriched cuticle is ancestral to lignin evolution in land plants.

    Science.gov (United States)

    Renault, Hugues; Alber, Annette; Horst, Nelly A; Basilio Lopes, Alexandra; Fich, Eric A; Kriegshauser, Lucie; Wiedemann, Gertrud; Ullmann, Pascaline; Herrgott, Laurence; Erhardt, Mathieu; Pineau, Emmanuelle; Ehlting, Jürgen; Schmitt, Martine; Rose, Jocelyn K C; Reski, Ralf; Werck-Reichhart, Danièle

    2017-03-08

    Lignin, one of the most abundant biopolymers on Earth, derives from the plant phenolic metabolism. It appeared upon terrestrialization and is thought critical for plant colonization of land. Early diverging land plants do not form lignin, but already have elements of its biosynthetic machinery. Here we delete in a moss the P450 oxygenase that defines the entry point in angiosperm lignin metabolism, and find that its pre-lignin pathway is essential for development. This pathway does not involve biochemical regulation via shikimate coupling, but instead is coupled with ascorbate catabolism, and controls the synthesis of the moss cuticle, which prevents desiccation and organ fusion. These cuticles share common features with lignin, cutin and suberin, and may represent the extant representative of a common ancestor. Our results demonstrate a critical role for the ancestral phenolic metabolism in moss erect growth and cuticle permeability, consistent with importance in plant adaptation to terrestrial conditions.

  8. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor

    Science.gov (United States)

    Baldwin, Maude W.; Toda, Yasuka; Nakagita, Tomoya; O'Connell, Mary J.; Klasing, Kirk C.; Misaka, Takumi; Edwards, Scott V.; Liberles, Stephen D.

    2015-01-01

    Sensory systems define an animal's capacity for perception and can evolve to promote survival in new environmental niches. We have uncovered a noncanonical mechanism for sweet taste perception that evolved in hummingbirds since their divergence from insectivorous swifts, their closest relatives. We observed the widespread absence in birds of an essential subunit (T1R2) of the only known vertebrate sweet receptor, raising questions about how specialized nectar feeders such as hummingbirds sense sugars. Receptor expression studies revealed that the ancestral umami receptor (the T1R1-T1R3 heterodimer) was repurposed in hummingbirds to function as a carbohydrate receptor. Furthermore, the molecular recognition properties of T1R1-T1R3 guided taste behavior in captive and wild hummingbirds. We propose that changing taste receptor function enabled hummingbirds to perceive and use nectar, facilitating the massive radiation of hummingbird species. PMID:25146290

  9. Sensory biology. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor.

    Science.gov (United States)

    Baldwin, Maude W; Toda, Yasuka; Nakagita, Tomoya; O'Connell, Mary J; Klasing, Kirk C; Misaka, Takumi; Edwards, Scott V; Liberles, Stephen D

    2014-08-22

    Sensory systems define an animal's capacity for perception and can evolve to promote survival in new environmental niches. We have uncovered a noncanonical mechanism for sweet taste perception that evolved in hummingbirds since their divergence from insectivorous swifts, their closest relatives. We observed the widespread absence in birds of an essential subunit (T1R2) of the only known vertebrate sweet receptor, raising questions about how specialized nectar feeders such as hummingbirds sense sugars. Receptor expression studies revealed that the ancestral umami receptor (the T1R1-T1R3 heterodimer) was repurposed in hummingbirds to function as a carbohydrate receptor. Furthermore, the molecular recognition properties of T1R1-T1R3 guided taste behavior in captive and wild hummingbirds. We propose that changing taste receptor function enabled hummingbirds to perceive and use nectar, facilitating the massive radiation of hummingbird species. Copyright © 2014, American Association for the Advancement of Science.

  10. Hagfish (cyclostomata, vertebrata): searching for the ancestral developmental plan of vertebrates.

    Science.gov (United States)

    Kuratani, Shigeru; Ota, Kinya G

    2008-02-01

    The phylogenetic position of the hagfish remains enigmatic. In contrast to molecular data that suggest monophyly of the cyclostomes, several morphological features imply a more ancestral state of this animal compared with the lampreys. To resolve this question requires an understanding of the embryology of the hagfish, especially of the neural crest. The early development of the hagfish has long remained a mystery. We collected a shallow-water-dwelling hagfish, Eptatretus burgeri, set up an aquarium tank designed to resemble its habitat, and successfully obtained several embryos. By observing the histology and expression of genes known to play fundamental roles in the neural crest, we found that the hagfish crest develops as delaminating migratory cells, as in other vertebrates. We conclude that the delaminating neural crest is a vertebrate synapomorphy that seems to have appeared from the beginning of their evolutionary history, before the splitting away of the hagfish lineage. (c) 2008 Wiley Periodicals, Inc.

  11. Treinta años después de la erupción del volcán Nevado del Ruiz: memorias, voces, reparación y escenarios de participación

    Directory of Open Access Journals (Sweden)

    Viviana Ramírez Loaiza

    2017-01-01

    Se concluye, que las personas sobrevivientes, participantes de la investigación, muestran una tendencia ante la memoria, conminada por el recuerdo, el dolor y la confusión, tanto en lo individual, como en lo colectivo e institucional. De igual forma los hallazgos develaron escenarios de participación política que aportan al fortalecimiento de las estrategias de afrontamiento individual y a la construcción de ejercicios de ciudadanía activa que, para el caso de Villamaría (Caldas, empieza a permear modos de vida de los habitantes en zona de alto riesgo.

  12. Wiring a periscope--ocelli, retinula axons, visual neuropils and the ancestrality of sea spiders.

    Science.gov (United States)

    Lehmann, Tobias; Hess, Martin; Melzer, Roland R

    2012-01-01

    The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a 'periscope' or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon "pseudoinverted" retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora) and Limulus polyphemus (Xiphosura). This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have 'looked' like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes.

  13. Wiring a periscope--ocelli, retinula axons, visual neuropils and the ancestrality of sea spiders.

    Directory of Open Access Journals (Sweden)

    Tobias Lehmann

    Full Text Available The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a 'periscope' or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon "pseudoinverted" retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora and Limulus polyphemus (Xiphosura. This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have 'looked' like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes.

  14. Wiring a Periscope – Ocelli, Retinula Axons, Visual Neuropils and the Ancestrality of Sea Spiders

    Science.gov (United States)

    Lehmann, Tobias; Heß, Martin; Melzer, Roland R.

    2012-01-01

    The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a ‘periscope’ or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon “pseudoinverted” retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora) and Limulus polyphemus (Xiphosura). This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have ‘looked’ like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes. PMID:22279594

  15. Ancestral Variations of the PCDHG Gene Cluster Predispose to Dyslexia in a Multiplex Family

    Directory of Open Access Journals (Sweden)

    Teesta Naskar

    2018-02-01

    Full Text Available Dyslexia is a heritable neurodevelopmental disorder characterized by difficulties in reading and writing. In this study, we describe the identification of a set of 17 polymorphisms located across 1.9 Mb region on chromosome 5q31.3, encompassing genes of the PCDHG cluster, TAF7, PCDH1 and ARHGAP26, dominantly inherited with dyslexia in a multi-incident family. Strikingly, the non-risk form of seven variations of the PCDHG cluster, are preponderant in the human lineage, while risk alleles are ancestral and conserved across Neanderthals to non-human primates. Four of these seven ancestral variations (c.460A > C [p.Ile154Leu], c.541G > A [p.Ala181Thr], c.2036G > C [p.Arg679Pro] and c.2059A > G [p.Lys687Glu] result in amino acid alterations. p.Ile154Leu and p.Ala181Thr are present at EC2: EC3 interacting interface of γA3-PCDH and γA4-PCDH respectively might affect trans-homophilic interaction and hence neuronal connectivity. p.Arg679Pro and p.Lys687Glu are present within the linker region connecting trans-membrane to extracellular domain. Sequence analysis indicated the importance of p.Ile154, p.Arg679 and p.Lys687 in maintaining class specificity. Thus the observed association of PCDHG genes encoding neural adhesion proteins reinforces the hypothesis of aberrant neuronal connectivity in the pathophysiology of dyslexia. Additionally, the striking conservation of the identified variants indicates a role of PCDHG in the evolution of highly specialized cognitive skills critical to reading.

  16. Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations

    Directory of Open Access Journals (Sweden)

    Omberg Larsson

    2012-06-01

    Full Text Available Abstract Background Populations of the Arabian Peninsula have a complex genetic structure that reflects waves of migrations including the earliest human migrations from Africa and eastern Asia, migrations along ancient civilization trading routes and colonization history of recent centuries. Results Here, we present a study of genome-wide admixture in this region, using 156 genotyped individuals from Qatar, a country located at the crossroads of these migration patterns. Since haplotypes of these individuals could have originated from many different populations across the world, we have developed a machine learning method "SupportMix" to infer loci-specific genomic ancestry when simultaneously analyzing many possible ancestral populations. Simulations show that SupportMix is not only more accurate than other popular admixture discovery tools but is the first admixture inference method that can efficiently scale for simultaneous analysis of 50-100 putative ancestral populations while being independent of prior demographic information. Conclusions By simultaneously using the 55 world populations from the Human Genome Diversity Panel, SupportMix was able to extract the fine-scale ancestry of the Qatar population, providing many new observations concerning the ancestry of the region. For example, as well as recapitulating the three major sub-populations in Qatar, composed of mainly Arabic, Persian, and African ancestry, SupportMix additionally identifies the specific ancestry of the Persian group to populations sampled in Greater Persia rather than from China and the ancestry of the African group to sub-Saharan origin and not Southern African Bantu origin as previously thought.

  17. Ancestral Variations of the PCDHG Gene Cluster Predispose to Dyslexia in a Multiplex Family.

    Science.gov (United States)

    Naskar, Teesta; Faruq, Mohammed; Banerjee, Priyajit; Khan, Massarat; Midha, Rashi; Kumari, Renu; Devasenapathy, Subhashree; Prajapati, Bharat; Sengupta, Sanghamitra; Jain, Deepti; Mukerji, Mitali; Singh, Nandini Chatterjee; Sinha, Subrata

    2018-02-01

    Dyslexia is a heritable neurodevelopmental disorder characterized by difficulties in reading and writing. In this study, we describe the identification of a set of 17 polymorphisms located across 1.9Mb region on chromosome 5q31.3, encompassing genes of the PCDHG cluster, TAF7, PCDH1 and ARHGAP26, dominantly inherited with dyslexia in a multi-incident family. Strikingly, the non-risk form of seven variations of the PCDHG cluster, are preponderant in the human lineage, while risk alleles are ancestral and conserved across Neanderthals to non-human primates. Four of these seven ancestral variations (c.460A>C [p.Ile154Leu], c.541G>A [p.Ala181Thr], c.2036G>C [p.Arg679Pro] and c.2059A>G [p.Lys687Glu]) result in amino acid alterations. p.Ile154Leu and p.Ala181Thr are present at EC2: EC3 interacting interface of γA3-PCDH and γA4-PCDH respectively might affect trans-homophilic interaction and hence neuronal connectivity. p.Arg679Pro and p.Lys687Glu are present within the linker region connecting trans-membrane to extracellular domain. Sequence analysis indicated the importance of p.Ile154, p.Arg679 and p.Lys687 in maintaining class specificity. Thus the observed association of PCDHG genes encoding neural adhesion proteins reinforces the hypothesis of aberrant neuronal connectivity in the pathophysiology of dyslexia. Additionally, the striking conservation of the identified variants indicates a role of PCDHG in the evolution of highly specialized cognitive skills critical to reading. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

  18. Evolutionary History of Assassin Bugs (Insecta: Hemiptera: Reduviidae): Insights from Divergence Dating and Ancestral State Reconstruction

    Science.gov (United States)

    Hwang, Wei Song; Weirauch, Christiane

    2012-01-01

    Assassin bugs are one of the most successful clades of predatory animals based on their species numbers (∼6,800 spp.) and wide distribution in terrestrial ecosystems. Various novel prey capture strategies and remarkable prey specializations contribute to their appeal as a model to study evolutionary pathways involved in predation. Here, we reconstruct the most comprehensive reduviid phylogeny (178 taxa, 18 subfamilies) to date based on molecular data (5 markers). This phylogeny tests current hypotheses on reduviid relationships emphasizing the polyphyletic Reduviinae and the blood-feeding, disease-vectoring Triatominae, and allows us, for the first time in assassin bugs, to reconstruct ancestral states of prey associations and microhabitats. Using a fossil-calibrated molecular tree, we estimated divergence times for key events in the evolutionary history of Reduviidae. Our results indicate that the polyphyletic Reduviinae fall into 11–14 separate clades. Triatominae are paraphyletic with respect to the reduviine genus Opisthacidius in the maximum likelihood analyses; this result is in contrast to prior hypotheses that found Triatominae to be monophyletic or polyphyletic and may be due to the more comprehensive taxon and character sampling in this study. The evolution of blood-feeding may thus have occurred once or twice independently among predatory assassin bugs. All prey specialists evolved from generalist ancestors, with multiple evolutionary origins of termite and ant specializations. A bark-associated life style on tree trunks is ancestral for most of the lineages of Higher Reduviidae; living on foliage has evolved at least six times independently. Reduviidae originated in the Middle Jurassic (178 Ma), but significant lineage diversification only began in the Late Cretaceous (97 Ma). The integration of molecular phylogenetics with fossil and life history data as presented in this paper provides insights into the evolutionary history of reduviids and clears

  19. Magmatism and Epithermal Gold-Silver Deposits of the Southern Ancestral Cascade Arc, Western Nevada and Eastern California

    Science.gov (United States)

    John, David A.; du Bray, Edward A.; Henry, Christopher D.; Vikre, Peter

    2015-01-01

    Many epithermal gold-silver deposits are temporally and spatially associated with late Oligocene to Pliocene magmatism of the southern ancestral Cascade arc in western Nevada and eastern California. These deposits, which include both quartz-adularia (low- and intermediate-sulfidation; Comstock Lode, Tonopah, Bodie) and quartz-alunite (high-sulfidation; Goldfield, Paradise Peak) types, were major producers of gold and silver. Ancestral Cascade arc magmatism preceded that of the modern High Cascades arc and reflects subduction of the Farallon plate beneath North America. Ancestral arc magmatism began about 45 Ma, continued until about 3 Ma, and extended from near the Canada-United States border in Washington southward to about 250 km southeast of Reno, Nevada. The ancestral arc was split into northern and southern segments across an inferred tear in the subducting slab between Mount Shasta and Lassen Peak in northern California. The southern segment extends between 42°N in northern California and 37°N in western Nevada and was active from about 30 to 3 Ma. It is bounded on the east by the northeast edge of the Walker Lane. Ancestral arc volcanism represents an abrupt change in composition and style of magmatism relative to that in central Nevada. Large volume, caldera-forming, silicic ignimbrites associated with the 37 to 19 Ma ignimbrite flareup are dominant in central Nevada, whereas volcanic centers of the ancestral arc in western Nevada consist of andesitic stratovolcanoes and dacitic to rhyolitic lava domes that mostly formed between 25 and 4 Ma. Both ancestral arc and ignimbrite flareup magmatism resulted from rollback of the shallowly dipping slab that began about 45 Ma in northeast Nevada and migrated south-southwest with time. Most southern segment ancestral arc rocks have oxidized, high potassium, calc-alkaline compositions with silica contents ranging continuously from about 55 to 77 wt%. Most lavas are porphyritic and contain coarse plagioclase

  20. The mechanistic basis of hemoglobin adaptation in the high-flying barheaded goose: insights from ancestral protein resurrection

    DEFF Research Database (Denmark)

    Natarajan, Chandrasekhar; Kumar, Amit; Moriyama, Hideaki

    2016-01-01

    the functional effects of causative mutations on the genetic background in which they actually occurred during evolution (i.e., in the BHG ancestor). An alternative ‘vertical’ approach is to reconstruct and resurrect ancestral proteins to test the effects of historical mutations on the genetic background...

  1. microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate

    OpenAIRE

    Heimberg, Alysha M.; Cowper-Sallari, Richard; Semon, Marie; Donoghue, Philip C. J.; Peterson, Kevin J.

    2010-01-01

    Hagfish and lampreys are the only living representatives of the jawless vertebrates (agnathans), and compared with jawed vertebrates (gnathostomes), they provide insight into the embryology, genomics, and body plan of the ancestral vertebrate. However, this insight has been obscured by controversy over their interrelationships. Morphological cladistic analyses have identified lampreys and gnathostomes as closest relatives, whereas molecular phylogenetic studies recover a monophyletic Cyclosto...

  2. Intersection of opposing pedagogical frameworks: Native Hawaiian ancestral stories and scientific inquiry in a high school science class

    Science.gov (United States)

    Kanahele-Mossman, Huihui

    Inquiry is defined as "an examination into facts and principles." In science education science inquiry is a process through which important discoveries are made by students through scientific methodology. The most important step in this process is forming the right question. The questions formed by students are usually the wrong questions which deem the remainder of the inquiry process impotent. This research will look at the pedagogy of ancestral stories for a solution. For the researcher, ancestral stories were a source of wonderment and learning not only from the lessons the stories revealed but mainly from the questions that still remained after the stories were told. Questions such as "why does the eel only swim near that part?", or "why does the story only talk about the uhu?" are examples of questions that remained after experiencing an ancestral narrative. The research questions were composed for the purpose of finding compatibility between the two pedagogies. The first research question which reads "how can Native Hawaiian ancestral stories encourage an increased level of student driven interactions at all levels of feedback from Native Hawaiian students in science classroom" focuses the research on the level of student feedback that initiate questions. Question two which reads "how can teachers of Native Hawaiian students facilitate the construction of science inquiry projects from ancestral stories" addresses the skill of the teacher and imbeds the concept of pedagogical knowledge into the literature. The last research question "how do analysis and discussion of the stories connect Native Hawaiian students to their ancestral intelligence" examines the role of identity and identity to ancestral intelligence. The method intended for this research was Grounded theory which allows the researcher to develop principles, concepts and theories based on the data presented. Another method utilized in this research is an undocumented but culturally imbedded method

  3. Chromosome evolution in kangaroos (Marsupialia: Macropodidae): cross species chromosome painting between the tammar wallaby and rock wallaby spp. with the 2n = 22 ancestral macropodid karyotype.

    Science.gov (United States)

    O'Neill, R J; Eldridge, M D; Toder, R; Ferguson-Smith, M A; O'Brien, P C; Graves, J A

    1999-06-01

    Marsupial mammals show extraordinary karyotype stability, with 2n = 14 considered ancestral. However, macropodid marsupials (kangaroos and wallabies) exhibit a considerable variety of karyotypes, with a hypothesised ancestral karyotype of 2n = 22. Speciation and karyotypic diversity in rock wallabies (Petrogale) is exceptional. We used cross species chromosome painting to examine the chromosome evolution between the tammar wallaby (2n = 16) and three 2n = 22 rock wallaby species groups with the putative ancestral karyotype. Hybridization of chromosome paints prepared from flow sorted chromosomes of the tammar wallaby to Petrogale spp., showed that this ancestral karyotype is largely conserved among 2n = 22 rock wallaby species, and confirmed the identity of ancestral chromosomes which fused to produce the bi-armed chromosomes of the 2n = 16 tammar wallaby. These results illustrate the fission-fusion process of karyotype evolution characteristic of the kangaroo group.

  4. Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction

    DEFF Research Database (Denmark)

    Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin

    2015-01-01

    necessarily be the descendant of a functional ancestor, we hypothesized that it should be possible to produce functional clones by reconstructing ancestral sequences. To test this we used phylogenetic methods to infer two ancestral sequences, which were then reconstructed as cDNA clones. Viruses rescued from...... the reconstructed cDNAs were tested in cell culture and pigs. Both reconstructed ancestral genomes proved functional, and displayed distinct phenotypes in vitro and in vivo. We suggest that reconstruction of ancestral viruses is a useful tool for experimental and computational investigations of virulence and viral...... evolution. Importantly, ancestral reconstruction can be done even on the basis of a set of sequences that all correspond to non-functional variants....

  5. Trans-ancestral studies fine map the SLE-susceptibility locus TNFSF4.

    Directory of Open Access Journals (Sweden)

    Harinder Manku

    Full Text Available We previously established an 80 kb haplotype upstream of TNFSF4 as a susceptibility locus in the autoimmune disease SLE. SLE-associated alleles at this locus are associated with inflammatory disorders, including atherosclerosis and ischaemic stroke. In Europeans, the TNFSF4 causal variants have remained elusive due to strong linkage disequilibrium exhibited by alleles spanning the region. Using a trans-ancestral approach to fine-map the locus, utilising 17,900 SLE and control subjects including Amerindian/Hispanics (1348 cases, 717 controls, African-Americans (AA (1529, 2048 and better powered cohorts of Europeans and East Asians, we find strong association of risk alleles in all ethnicities; the AA association replicates in African-American Gullah (152,122. The best evidence of association comes from two adjacent markers: rs2205960-T (P=1.71 × 10(-34 , OR=1.43[1.26-1.60] and rs1234317-T (P=1.16 × 10(-28 , OR=1.38[1.24-1.54]. Inference of fine-scale recombination rates for all populations tested finds the 80 kb risk and non-risk haplotypes in all except African-Americans. In this population the decay of recombination equates to an 11 kb risk haplotype, anchored in the 5' region proximal to TNFSF4 and tagged by rs2205960-T after 1000 Genomes phase 1 (v3 imputation. Conditional regression analyses delineate the 5' risk signal to rs2205960-T and the independent non-risk signal to rs1234314-C. Our case-only and SLE-control cohorts demonstrate robust association of rs2205960-T with autoantibody production. The rs2205960-T is predicted to form part of a decameric motif which binds NF-κBp65 with increased affinity compared to rs2205960-G. ChIP-seq data also indicate NF-κB interaction with the DNA sequence at this position in LCL cells. Our research suggests association of rs2205960-T with SLE across multiple groups and an independent non-risk signal at rs1234314-C. rs2205960-T is associated with autoantibody production and lymphopenia. Our data

  6. Elongation Factor-Tu (EF-Tu) proteins structural stability and bioinformatics in ancestral gene reconstruction

    Science.gov (United States)

    Dehipawala, Sunil; Nguyen, A.; Tremberger, G.; Cheung, E.; Schneider, P.; Lieberman, D.; Holden, T.; Cheung, T.

    2013-09-01

    A paleo-experimental evolution report on elongation factor EF-Tu structural stability results has provided an opportunity to rewind the tape of life using the ancestral protein sequence reconstruction modeling approach; consistent with the book of life dogma in current biology and being an important component in the astrobiology community. Fractal dimension via the Higuchi fractal method and Shannon entropy of the DNA sequence classification could be used in a diagram that serves as a simple summary. Results from biomedical gene research provide examples on the diagram methodology. Comparisons between biomedical genes such as EEF2 (elongation factor 2 human, mouse, etc), WDR85 in epigenetics, HAR1 in human specificity, DLG1 in cognitive skill, and HLA-C in mosquito bite immunology with EF Tu DNA sequences have accounted for the reported circular dichroism thermo-stability data systematically; the results also infer a relatively less volatility geologic time period from 2 to 3 Gyr from adaptation viewpoint. Comparison to Thermotoga maritima MSB8 and Psychrobacter shows that Thermus thermophilus HB8 EF-Tu calibration sequence could be an outlier, consistent with free energy calculation by NUPACK. Diagram methodology allows computer simulation studies and HAR1 shows about 0.5% probability from chimp to human in terms of diagram location, and SNP simulation results such as amoebic meningoencephalitis NAF1 suggest correlation. Extensions to the studies of the translation and transcription elongation factor sequences in Megavirus Chiliensis, Megavirus Lba and Pandoravirus show that the studied Pandoravirus sequence could be an outlier with the highest fractal dimension and lowest entropy, as compared to chicken as a deviant in the DNMT3A DNA methylation gene sequences from zebrafish to human and to the less than one percent probability in computer simulation using the HAR1 0.5% probability as reference. The diagram methodology would be useful in ancestral gene

  7. Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states

    Directory of Open Access Journals (Sweden)

    Grünewald Stefan

    2011-01-01

    Full Text Available Abstract Background As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all branches of a tree to explain the evolution of a character. Due to the extensive usage of this method, it has become a scientific endeavor in recent years to study the reconstruction accuracies of the Fitch method. However, most studies are restricted to 2-state evolutionary models and a study for higher-state models is needed since DNA sequences take the format of 4-state series and protein sequences even have 20 states. Results In this paper, the ambiguous and unambiguous reconstruction accuracy of the Fitch method are studied for N-state evolutionary models. Given an arbitrary phylogenetic tree, a recurrence system is first presented to calculate iteratively the two accuracies. As complete binary tree and comb-shaped tree are the two extremal evolutionary tree topologies according to balance, we focus on the reconstruction accuracies on these two topologies and analyze their asymptotic properties. Then, 1000 Yule trees with 1024 leaves are generated and analyzed to simulate real evolutionary scenarios. It is known that more taxa not necessarily increase the reconstruction accuracies under 2-state models. The result under N-state models is also tested. Conclusions In a large tree with many leaves, the reconstruction accuracies of using all taxa are sometimes less than those of using a leaf subset under N-state models. For complete binary trees, there always exists an equilibrium interval [a, b] of conservation probability, in which the limiting ambiguous reconstruction accuracy equals to the probability of randomly picking a state. The value b decreases with the increase of the number of states, and it seems to converge. When the conservation probability is greater than b, the reconstruction accuracies of the Fitch method increase rapidly. The reconstruction

  8. Phylogenetic evidence for an ancestral coevolution between a major clade of coccidian parasites and elasmobranch hosts.

    Science.gov (United States)

    Xavier, Raquel; Santos, Joana L; Veríssimo, Ana

    2018-03-16

    Cartilaginous fishes are the oldest jawed vertebrates and are also reported to be the hosts of some of the most basal lineages of Cestoda and Aporocotylidae (Digenea) parasites. Recently a phylogenetic analysis of the coccidia (Apicomplexa) infecting marine vertebrates revealed that the lesser spotted dogfish harbours parasite lineages basal to Eimeria Schneider, 1875 and the group formed by Schellackia Reichenow, 1919, Lankesterella Ames, 1923, Caryospora Leger, 1904 and Isospora Schneider, 1881. In the present study we have found additional lineages of coccidian parasites infecting the cownose ray Rhinoptera bonasus Mitchill and the blue shark Prionace glauca Linnaeus. These lineages were also found as basal to species from the genera Lankesterella, Schellackia, Caryospora and Isospora infecting higher vertebrates. These results confirm previous phylogenetic assessments and suggest that these parasitic lineages first evolved in basal vertebrate hosts (i.e. Chondrichthyes), and that the more derived lineages infect higher vertebrates (e.g. birds and mammals) conforming to the evolution of their hosts. We hypothesise that elasmobranchs might host further ancestral parasite lineages harbouring unknown links of parasite evolution.

  9. Ancestral state reconstruction of ontogeny supports a bilaterian affinity for Dickinsonia.

    Science.gov (United States)

    Gold, David A; Runnegar, Bruce; Gehling, James G; Jacobs, David K

    2015-01-01

    Despite numerous attempts, classification of the Precambrian fossil Dickinsonia has eluded scientific consensus. This is largely because Dickinsonia and its relatives are structurally simple, lacking morphological synapomorphies to clarify their relationship to modern taxa. However, there is increasing precedence for using ontogeny to constrain enigmatic fossils, and growth of the type species Dickinsonia costata is well understood. This study formalizes the connection between ontogeny in Dickinsonia-which grows by the addition of metameric units onto one end of its primary axis-with terminal addition, defined as growth and patterning from a posterior, subtermial growth zone. We employ ancestral state reconstruction and stochastic character mapping to conclude that terminal addition is a synapomorphy of bilaterian animals. Thus, terminal addition allies Dickinsonia with the bilaterians, providing evidence that large stem- or crown-group bilaterians made up a significant proportion of the Precambrian biota. This study also illustrates the potential for combining developmental and phylogenetic data in constraining the placement of ancient problematic fossil taxa on the evolutionary tree. © 2015 Wiley Periodicals, Inc.

  10. Detection of Weakly Conserved Ancestral Mammalian RegulatorySequences by Primate Comparisons

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    Wang, Qian-fei; Prabhakar, Shyam; Chanan, Sumita; Cheng,Jan-Fang; Rubin, Edward M.; Boffelli, Dario

    2006-06-01

    Genomic comparisons between human and distant, non-primatemammals are commonly used to identify cis-regulatory elements based onconstrained sequence evolution. However, these methods fail to detectcryptic functional elements, which are too weakly conserved among mammalsto distinguish from nonfunctional DNA. To address this problem, weexplored the potential of deep intra-primate sequence comparisons. Wesequenced the orthologs of 558 kb of human genomic sequence, coveringmultiple loci involved in cholesterol homeostasis, in 6 nonhumanprimates. Our analysis identified 6 noncoding DNA elements displayingsignificant conservation among primates, but undetectable in more distantcomparisons. In vitro and in vivo tests revealed that at least three ofthese 6 elements have regulatory function. Notably, the mouse orthologsof these three functional human sequences had regulatory activity despitetheir lack of significant sequence conservation, indicating that they arecryptic ancestral cis-regulatory elements. These regulatory elementscould still be detected in a smaller set of three primate speciesincluding human, rhesus and marmoset. Since the human and rhesus genomesequences are already available, and the marmoset genome is activelybeing sequenced, the primate-specific conservation analysis describedhere can be applied in the near future on a whole-genome scale, tocomplement the annotation provided by more distant speciescomparisons.

  11. Determination of ancestral proportions in synthetic bovine breeds using commonly employed microsatellite markers.

    Science.gov (United States)

    Bicalho, H M S; Pimenta, C G; Mendes, I K P; Pena, H B; Queiroz, E M; Pena, S D J

    2006-07-31

    The International Society of Animal Genetics (ISAG) has chosen nine microsatellites (international marker set) as a standard that should be included in all cattle parentage studies. They are BM1824, BM2113, INRA023, SPS115, TGLA122, TGLA126, TGLA227, ETH10, and ETH225. We decided to ascertain whether this microsatellite set could be used to determine ancestral proportions in individual animals of synthetic breeds produced by crossing zebu and taurine cattle. Since the genotypes of these markers are routinely available, this would constitute a practical and cost-free method to estimate the ancestry of synthetic breed animals. Genotypes of 100 Gir and 100 Holstein animals were examined for this ISAG marker set. As expected, there were very significant allele frequency differences between the two breeds at most loci. We also typed 20 Girolando animals for which there was complete genealogical information. "Structure" software easily distinguished Holstein and Gir animals based on their microsatellite genotypes; it also attributed the genomic proportion of zebu and taurine of each of the 20 Girolando animals. The proportion of Holstein ancestry was then regressed on the genealogical data; there was a highly significant correlation (r = 0.84, P Girolando animals within narrow confidence limits. This microsatellite set might also be useful for estimating the proportions of taurine and zebu origins in commercial meat products.

  12. Reconstruction of chromosome rearrangements between the two most ancestral duckweed species Spirodela polyrhiza and S. intermedia.

    Science.gov (United States)

    Hoang, Phuong T N; Schubert, Ingo

    2017-12-01

    The monophyletic duckweeds comprising five genera within the monocot order Alismatales are neotenic, free-floating, aquatic organisms with fast vegetative propagation. Some species are considered for efficient biomass production, for life stock feeding, and for (simultaneous) wastewater phytoremediation. The ancestral genus Spirodela consists of only two species, Spirodela polyrhiza and Spirodela intermedia, both with a similar small genome (~160 Mbp/1C). Reference genome drafts and a physical map of 96 BACs on the 20 chromosome pairs of S. polyrhiza strain 7498 are available and provide useful tools for further evolutionary studies within and between duckweed genera. Here we applied sequential comparative multicolor fluorescence in situ hybridization (mcFISH) to address homeologous chromosomes in S. intermedia (2n = 36), to detect chromosome rearrangements between both species and to elucidate the mechanisms which may have led to the chromosome number alteration after their evolutionary separation. Ten chromosome pairs proved to be conserved between S. polyrhiza and S. intermedia, the remaining ones experienced, depending on the assumed direction of evolution, translocations, inversion, and fissions, respectively. These results represent a first step to unravel karyotype evolution among duckweeds and are anchor points for future genome assembly of S. intermedia.

  13. Origins and Spread of Machado-Joseph Disease Ancestral Mutations Events.

    Science.gov (United States)

    Martins, Sandra; Sequeiros, Jorge

    2018-01-01

    Machado-Joseph disease (MJD) is the most common autosomal dominant spinocerebellar ataxia reported worldwide, but it shows marked geographic differences in prevalence. The study of ancestral origins and spreading routes of MJD mutational events has contributed to explain such differences. During human evolution, at least two independent de novo MJD expansions occurred in distinct haplotype backgrounds: TTACAC and GTGGCA (named Joseph and Machado lineages). The most ancient Joseph lineage, probably of Asian origin, has been introduced recently in Europe, where founder effects are responsible for the high MJD prevalence, as occurs in the Portuguese/Azorean island of Flores and Northeastern mainland. The Machado lineage is geographically more restricted, with most known families in Portugal (island of São Miguel and along the Tagus valley). The hypothesis of other mutational origins has been raised, namely to explain the disease among Australian aborigines; however, a comprehensive haplotype study suggested the introduction of the Joseph lineage in that community via Asia. Also, additional SNP-based haplotypes (TTAGAC, TTGGAC and GTGCCA) were observed in other MJD families, but phylogenetic analysis with more polymorphic flanking markers did not point to independent mutational events, reinforcing the hypothesis of a very low mutation rate underlying this repeat expansion locus.

  14. Comparative Genomics of Facultative Bacterial Symbionts Isolated from European Orius Species Reveals an Ancestral Symbiotic Association

    Directory of Open Access Journals (Sweden)

    Xiaorui Chen

    2017-10-01

    Full Text Available Pest control in agriculture employs diverse strategies, among which the use of predatory insects has steadily increased. The use of several species within the genus Orius in pest control is widely spread, particularly in Mediterranean Europe. Commercial mass rearing of predatory insects is costly, and research efforts have concentrated on diet manipulation and selective breeding to reduce costs and improve efficacy. The characterisation and contribution of microbial symbionts to Orius sp. fitness, behaviour, and potential impact on human health has been neglected. This paper provides the first genome sequence level description of the predominant culturable facultative bacterial symbionts associated with five Orius species (O. laevigatus, O. niger, O. pallidicornis, O. majusculus, and O. albidipennis from several geographical locations. Two types of symbionts were broadly classified as members of the genera Serratia and Leucobacter, while a third constitutes a new genus within the Erwiniaceae. These symbionts were found to colonise all the insect specimens tested, which evidenced an ancestral symbiotic association between these bacteria and the genus Orius. Pangenome analyses of the Serratia sp. isolates offered clues linking Type VI secretion system effector–immunity proteins from the Tai4 sub-family to the symbiotic lifestyle.

  15. The evolution of brachiation in ateline primates, ancestral character states and history.

    Science.gov (United States)

    Jones, Andrea L

    2008-10-01

    This study examines how brachiation locomotion evolved in ateline primates using recently-developed molecular phylogenies and character reconstruction algorithms, and a newly-collected dataset including the fossils Protopithecus, Caipora, and Cebupithecia. Fossils are added to two platyrrhine molecular phylogenies to create several phylogenetic scenarios. A generalized least squares algorithm reconstructs ateline and atelin ancestral character states for 17 characters that differentiate between ateline brachiators and nonbrachiators. Histories of these characters are mapped out on these phylogenies, producing two scenarios of ateline brachiation evolution that have four commonalities: First, many characters change towards the Ateles condition on the ateline stem lineage before Alouatta splits off from the atelins, suggesting that an ateline energy-maximizing strategy began before the atelines diversified. Second, the ateline last common ancestor is always reconstructed as an agile quadruped, usually with suspensory abilities. It is never exactly like Alouatta and many characters reverse and change towards the Alouatta condition after Alouatta separates from the atelins. Third, most characters undergo homoplastic change in all ateline lineages, especially on the Ateles and Brachyteles terminal branches. Fourth, ateline character evolution probably went through a hindlimb suspension with tail-bracing phase. The atelines most likely diversified via a quick adaptive radiation, with bursts of punctuated change occurring in their postcranial skeletons, due to changing climatic conditions, which may have caused competition among the atelines and between atelines and pitheciines.

  16. Anomalously high variation in postnatal development is ancestral for dinosaurs but lost in birds

    Science.gov (United States)

    Griffin, Christopher T.; Nesbitt, Sterling J.

    2016-12-01

    Compared with all other living reptiles, birds grow extremely fast and possess unusually low levels of intraspecific variation during postnatal development. It is now clear that birds inherited their high rates of growth from their dinosaurian ancestors, but the origin of the avian condition of low variation during development is poorly constrained. The most well-understood growth trajectories of later Mesozoic theropods (e.g., Tyrannosaurus, Allosaurus) show similarly low variation to birds, contrasting with higher variation in extant crocodylians. Here, we show that deep within Dinosauria, among the earliest-diverging dinosaurs, anomalously high intraspecific variation is widespread but then is lost in more derived theropods. This style of development is ancestral for dinosaurs and their closest relatives, and, surprisingly, this level of variation is far higher than in living crocodylians. Among early dinosaurs, this variation is widespread across Pangaea in the Triassic and Early Jurassic, and among early-diverging theropods (ceratosaurs), this variation is maintained for 165 million years to the end of the Cretaceous. Because the Late Triassic environment across Pangaea was volatile and heterogeneous, this variation may have contributed to the rise of dinosaurian dominance through the end of the Triassic Period.

  17. Phylogenetic uncertainty can bias the number of evolutionary transitions estimated from ancestral state reconstruction methods.

    Science.gov (United States)

    Duchêne, Sebastian; Lanfear, Robert

    2015-09-01

    Ancestral state reconstruction (ASR) is a popular method for exploring the evolutionary history of traits that leave little or no trace in the fossil record. For example, it has been used to test hypotheses about the number of evolutionary origins of key life-history traits such as oviparity, or key morphological structures such as wings. Many studies that use ASR have suggested that the number of evolutionary origins of such traits is higher than was previously thought. The scope of such inferences is increasing rapidly, facilitated by the construction of very large phylogenies and life-history databases. In this paper, we use simulations to show that the number of evolutionary origins of a trait tends to be overestimated when the phylogeny is not perfect. In some cases, the estimated number of transitions can be several fold higher than the true value. Furthermore, we show that the bias is not always corrected by standard approaches to account for phylogenetic uncertainty, such as repeating the analysis on a large collection of possible trees. These findings have important implications for studies that seek to estimate the number of origins of a trait, particularly those that use large phylogenies that are associated with considerable uncertainty. We discuss the implications of this bias, and methods to ameliorate it. © 2015 Wiley Periodicals, Inc.

  18. Counting all possible ancestral configurations of sample sequences in population genetics.

    Science.gov (United States)

    Song, Yun S; Lyngsø, Rune; Hein, Jotun

    2006-01-01

    Given a set D of input sequences, a genealogy for D can be constructed backward in time using such evolutionary events as mutation, coalescent, and recombination. An ancestral configuration (AC) can be regarded as the multiset of all sequences present at a particular point in time in a possible genealogy for D. The complexity of computing the likelihood of observing D depends heavily on the total number of distinct ACs of D and, therefore, it is of interest to estimate that number. For D consisting of binary sequences of finite length, we consider the problem of enumerating exactly all distinct ACs. We assume that the root sequence type is known and that the mutation process is governed by the infinite-sites model. When there is no recombination, we construct a general method of obtaining closed-form formulas for the total number of ACs. The enumeration problem becomes much more complicated when recombination is involved. In that case, we devise a method of enumeration based on counting contingency tables and construct a dynamic programming algorithm for the approach. Last, we describe a method of counting the number of ACs that can appear in genealogies with less than or equal to a given number R of recombinations. Of particular interest is the case in which R is close to the minimum number of recombinations for D.

  19. Mouthparts of the Burgess Shale fossils Odontogriphus and Wiwaxia: implications for the ancestral molluscan radula.

    Science.gov (United States)

    Smith, Martin R

    2012-10-22

    The Middle Cambrian lophotrochozoans Odontogriphus omalus and Wiwaxia corrugata have been interpreted as stem-group members of either the Mollusca, the Annelida, or a group containing Mollusca + Annelida. The case for each classification rests on the organisms' unusual mouthparts, whose two to three tooth-rows resemble both the molluscan radula and the jaws of certain annelid worms. Despite their potential significance, these mouthparts have not previously been described in detail. This study examined the feeding apparatuses of over 300 specimens from the 505-million-year-old Burgess Shale, many of which were studied for the first time. Rather than denticulate plates, each tooth row comprises a single axial tooth that is flanked on each side by eight to 16 separate shoehorn-shaped teeth. Tooth rows sat on a grooved basal tongue, and two large lobes flanked the apparatus. New observations--the shape, distribution and articulation of the individual teeth, and the mouthparts' mode of growth--are incompatible with an annelid interpretation, instead supporting a classification in Mollusca. The ancestral molluscan radula is best reconstructed as unipartite with a symmetrical medial tooth, and Odontogriphus and Wiwaxia as grazing deposit-feeders.

  20. Mitogenomics and phylogenomics reveal priapulid worms as extant models of the ancestral Ecdysozoan.

    Science.gov (United States)

    Webster, Bonnie L; Copley, Richard R; Jenner, Ronald A; Mackenzie-Dodds, Jacqueline A; Bourlat, Sarah J; Rota-Stabelli, Omar; Littlewood, D T J; Telford, Maximilian J

    2006-01-01

    Research into arthropod evolution is hampered by the derived nature and rapid evolution of the best-studied out-group: the nematodes. We consider priapulids as an alternative out-group. Priapulids are a small phylum of bottom-dwelling marine worms; their tubular body with spiny proboscis or introvert has changed little over 520 million years and recognizable priapulids are common among exceptionally preserved Cambrian fossils. Using the complete mitochondrial genome and 42 nuclear genes from Priapulus caudatus, we show that priapulids are slowly evolving ecdysozoans; almost all these priapulid genes have evolved more slowly than nematode orthologs and the priapulid mitochondrial gene order may be unchanged since the Cambrian. Considering their primitive bodyplan and embryology and the great conservation of both nuclear and mitochondrial genomes, priapulids may deserve the popular epithet of "living fossil." Their study is likely to yield significant new insights into the early evolution of the Ecdysozoa and the origins of the arthropods and their kin as well as aiding inference of the morphology of ancestral Ecdysozoa and Bilateria and their genomes.

  1. Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures.

    Science.gov (United States)

    Manikkam, Mohan; Guerrero-Bosagna, Carlos; Tracey, Rebecca; Haque, Md M; Skinner, Michael K

    2012-01-01

    Environmental factors during fetal development can induce a permanent epigenetic change in the germ line (sperm) that then transmits epigenetic transgenerational inheritance of adult-onset disease in the absence of any subsequent exposure. The epigenetic transgenerational actions of various environmental compounds and relevant mixtures were investigated with the use of a pesticide mixture (permethrin and insect repellant DEET), a plastic mixture (bisphenol A and phthalates), dioxin (TCDD) and a hydrocarbon mixture (jet fuel, JP8). After transient exposure of F0 gestating female rats during the period of embryonic gonadal sex determination, the subsequent F1-F3 generations were obtained in the absence of any environmental exposure. The effects on the F1, F2 and F3 generations pubertal onset and gonadal function were assessed. The plastics, dioxin and jet fuel were found to promote early-onset female puberty transgenerationally (F3 generation). Spermatogenic cell apoptosis was affected transgenerationally. Ovarian primordial follicle pool size was significantly decreased with all treatments transgenerationally. Differential DNA methylation of the F3 generation sperm promoter epigenome was examined. Differential DNA methylation regions (DMR) were identified in the sperm of all exposure lineage males and found to be consistent within a specific exposure lineage, but different between the exposures. Several genomic features of the DMR, such as low density CpG content, were identified. Exposure-specific epigenetic biomarkers were identified that may allow for the assessment of ancestral environmental exposures associated with adult onset disease.

  2. Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures.

    Directory of Open Access Journals (Sweden)

    Mohan Manikkam

    Full Text Available Environmental factors during fetal development can induce a permanent epigenetic change in the germ line (sperm that then transmits epigenetic transgenerational inheritance of adult-onset disease in the absence of any subsequent exposure. The epigenetic transgenerational actions of various environmental compounds and relevant mixtures were investigated with the use of a pesticide mixture (permethrin and insect repellant DEET, a plastic mixture (bisphenol A and phthalates, dioxin (TCDD and a hydrocarbon mixture (jet fuel, JP8. After transient exposure of F0 gestating female rats during the period of embryonic gonadal sex determination, the subsequent F1-F3 generations were obtained in the absence of any environmental exposure. The effects on the F1, F2 and F3 generations pubertal onset and gonadal function were assessed. The plastics, dioxin and jet fuel were found to promote early-onset female puberty transgenerationally (F3 generation. Spermatogenic cell apoptosis was affected transgenerationally. Ovarian primordial follicle pool size was significantly decreased with all treatments transgenerationally. Differential DNA methylation of the F3 generation sperm promoter epigenome was examined. Differential DNA methylation regions (DMR were identified in the sperm of all exposure lineage males and found to be consistent within a specific exposure lineage, but different between the exposures. Several genomic features of the DMR, such as low density CpG content, were identified. Exposure-specific epigenetic biomarkers were identified that may allow for the assessment of ancestral environmental exposures associated with adult onset disease.

  3. Bacterial community composition and diversity in an ancestral ant fungus symbiosis.

    Science.gov (United States)

    Kellner, Katrin; Ishak, Heather D; Linksvayer, Timothy A; Mueller, Ulrich G

    2015-07-01

    Fungus-farming ants (Hymenoptera: Formicidae, Attini) exhibit some of the most complex microbial symbioses because both macroscopic partners (ants and fungus) are associated with a rich community of microorganisms. The ant and fungal microbiomes are thought to serve important beneficial nutritional and defensive roles in these symbioses. While most recent research has investigated the bacterial communities in the higher attines (e.g. the leaf-cutter ant genera Atta and Acromyrmex), which are often associated with antibiotic-producing Actinobacteria, very little is known about the microbial communities in basal lineages, labeled as 'lower attines', which retain the ancestral traits of smaller and more simple societies. In this study, we used 16S amplicon pyrosequencing to characterize bacterial communities of the lower attine ant Mycocepurus smithii among seven sampling sites in central Panama. We discovered that ant and fungus garden-associated microbiota were distinct from surrounding soil, but unlike the situation in the derived fungus-gardening ants, which show distinct ant and fungal microbiomes, microbial community structure of the ants and their fungi were similar. Another surprising finding was that the abundance of actinomycete bacteria was low and instead, these symbioses were characterized by an abundance of Lactobacillus and Pantoea bacteria. Furthermore, our data indicate that Lactobacillus strains are acquired from the environment rather than acquired vertically. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  4. Cranial morphological variation among contemporary Mexicans: Regional trends, ancestral affinities, and genetic comparisons.

    Science.gov (United States)

    Hughes, Cris E; Tise, Meredith L; Trammell, Lindsay H; Anderson, Bruce E

    2013-08-01

    Genetic research has documented geographical variation within Mexico that corresponds to trends in ancestry admixture from postcolonial times on. The purpose of this study is to determine whether craniometric variation among contemporary Mexicans is comparable to that reported in genetic studies. Standard osteometric measurements were taken on 82 male crania derived from forensic cases, with geographic origins of the specimens spanning over two-thirds of Mexico's states. To study similarities in regional clustering patterns with genetic data, k-means clustering analyses were performed, followed by chi-square tests of association between cluster assignments and geographic region of origin. Normal mixtures analyses were performed, centered on three "ancestral" sample proxies to estimate classification probability to each ancestry. The results demonstrate that the cranial morphological sample data cluster similarly to the regional groupings inferred from the genetic data. Additionally, the results indicate a gradient trend in population structure for contemporary Mexicans, with the proportion of Amerindian ancestry increasing from North to South while, conversely, European ancestry proportion estimates increase from South to North. Furthermore, the probabilities for classification of African ancestry remained low across the regions, again reflecting the results for the genetic data. Cranial morphological variation is well aligned with the genetic data for describing broad trends among Mexican populations, as well as yielding comparable estimates of general ancestry affiliations that reflect Mexico's history of Spanish contact and colonialism. Copyright © 2013 Wiley Periodicals, Inc.

  5. A Skull Might Lie: Modeling Ancestral Ranges and Diet from Genes and Shape of Tree Squirrels.

    Science.gov (United States)

    Pečnerová, Patrícia; Moravec, Jiří C; Martínková, Natália

    2015-11-01

    Tropical forests of Central and South America represent hotspots of biological diversity. Tree squirrels of the tribe Sciurini are an excellent model system for the study of tropical biodiversity as these squirrels disperse exceptional distances, and after colonizing the tropics of the Central and South America, they have diversified rapidly. Here, we compare signals from DNA sequences with morphological signals using pictures of skulls and computational simulations. Phylogenetic analyses reveal step-wise geographic divergence across the Northern Hemisphere. In Central and South America, tree squirrels form two separate clades, which split from a common ancestor. Simulations of ancestral distributions show western Amazonia as the epicenter of speciation in South America. This finding suggests that wet tropical forests on the foothills of Andes possibly served as refugia of squirrel diversification during Pleistocene climatic oscillations. Comparison of phylogeny and morphology reveals one major discrepancy: Microsciurus species are a single clade morphologically but are polyphyletic genetically. Modeling of morphology-diet relationships shows that the only group of species with a direct link between skull shape and diet are the bark-gleaning insectivorous species of Microsciurus. This finding suggests that the current designation of Microsciurus as a genus is based on convergent ecologically driven changes in morphology. © The Author(s) 2015. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  6. Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes.

    Directory of Open Access Journals (Sweden)

    Vincent J Lynch

    2009-01-01

    Full Text Available While the proposal that large-scale genome expansions occurred early in vertebrate evolution is widely accepted, the exact mechanisms of the expansion--such as a single or multiple rounds of whole genome duplication, bloc chromosome duplications, large-scale individual gene duplications, or some combination of these--is unclear. Gene families with a single invertebrate member but four vertebrate members, such as the Hox clusters, provided early support for Ohno's hypothesis that two rounds of genome duplication (the 2R-model occurred in the stem lineage of extant vertebrates. However, despite extensive study, the duplication history of the Hox clusters has remained unclear, calling into question its usefulness in resolving the role of large-scale gene or genome duplications in early vertebrates. Here, we present a phylogenetic analysis of the vertebrate Hox clusters and several linked genes (the Hox "paralogon" and show that different phylogenies are obtained for Dlx and Col genes than for Hox and ErbB genes. We show that these results are robust to errors in phylogenetic inference and suggest that these competing phylogenies can be resolved if two chromosomal crossover events occurred in the ancestral vertebrate. These results resolve conflicting data on the order of Hox gene duplications and the role of genome duplication in vertebrate evolution and suggest that a period of genome reorganization occurred after genome duplications in early vertebrates.

  7. Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication.

    Directory of Open Access Journals (Sweden)

    Karin Voordeckers

    Full Text Available Gene duplications are believed to facilitate evolutionary innovation. However, the mechanisms shaping the fate of duplicated genes remain heavily debated because the molecular processes and evolutionary forces involved are difficult to reconstruct. Here, we study a large family of fungal glucosidase genes that underwent several duplication events. We reconstruct all key ancestral enzymes and show that the very first preduplication enzyme was primarily active on maltose-like substrates, with trace activity for isomaltose-like sugars. Structural analysis and activity measurements on resurrected and present-day enzymes suggest that both activities cannot be fully optimized in a single enzyme. However, gene duplications repeatedly spawned daughter genes in which mutations optimized either isomaltase or maltase activity. Interestingly, similar shifts in enzyme activity were reached multiple times via different evolutionary routes. Together, our results provide a detailed picture of the molecular mechanisms that drove divergence of these duplicated enzymes and show that whereas the classic models of dosage, sub-, and neofunctionalization are helpful to conceptualize the implications of gene duplication, the three mechanisms co-occur and intertwine.

  8. Ancestral gene duplication enabled the evolution of multifunctional cellulases in stick insects (Phasmatodea).

    Science.gov (United States)

    Shelomi, Matan; Heckel, David G; Pauchet, Yannick

    2016-04-01

    The Phasmatodea (stick insects) have multiple, endogenous, highly expressed copies of glycoside hydrolase family 9 (GH9) genes. The purpose for retaining so many was unknown. We cloned and expressed the enzymes in transfected insect cell lines, and tested the individual proteins against different plant cell wall component poly- and oligosaccharides. Nearly all isolated enzymes were active against carboxymethylcellulose, however most could also degrade glucomannan, and some also either xylan or xyloglucan. The latter two enzyme groups were each monophyletic, suggesting the evolution of these novel substrate specificities in an early ancestor of the order. Such enzymes are highly unusual for Metazoa, for which no xyloglucanases had been reported. Phasmatodea gut extracts could degrade multiple plant cell wall components fully into sugar monomers, suggesting that enzymatic breakdown of plant cell walls by the entire Phasmatodea digestome may contribute to the Phasmatodea nutritional budget. The duplication and neofunctionalization of GH9s in the ancestral Phasmatodea may have enabled them to specialize as folivores and diverge from their omnivorous ancestors. The structural changes enabling these unprecedented activities in the cellulases require further study. Copyright © 2016 Elsevier Ltd. All rights reserved.

  9. Patterns of kinesin evolution reveal a complex ancestral eukaryote with a multifunctional cytoskeleton

    Directory of Open Access Journals (Sweden)

    Richards Thomas A

    2010-04-01

    Full Text Available Abstract Background The genesis of the eukaryotes was a pivotal event in evolution and was accompanied by the acquisition of numerous new cellular features including compartmentalization by cytoplasmic organelles, mitosis and meiosis, and ciliary motility. Essential for the development of these features was the tubulin cytoskeleton and associated motors. It is therefore possible to map ancient cell evolution by reconstructing the evolutionary history of motor proteins. Here, we have used the kinesin motor repertoire of 45 extant eukaryotes to infer the ancestral state of this superfamily in the last common eukaryotic ancestor (LCEA. Results We bioinformatically identified 1624 putative kinesin proteins, determined their protein domain architectures and calculated a comprehensive Bayesian phylogeny for the kinesin superfamily with statistical support. These data enabled us to define 51 anciently-derived kinesin paralogs (including three new kinesin families and 105 domain architectures. We then mapped these characters across eukaryotes, accounting for secondary loss within established eukaryotic groupings, and alternative tree topologies. Conclusions We show that a minimum of 11 kinesin families and 3 protein domain architectures were present in the LCEA. This demonstrates that the microtubule-based cytoskeleton of the LCEA was surprisingly highly developed in terms of kinesin motor types, but that domain architectures have been extensively modified during the diversification of the eukaryotes. Our analysis provides molecular evidence for the existence of several key cellular functions in the LCEA, and shows that a large proportion of motor family diversity and cellular complexity had already arisen in this ancient cell.

  10. Accuracy of Genomic Prediction in Synthetic Populations Depending on the Number of Parents, Relatedness, and Ancestral Linkage Disequilibrium.

    Science.gov (United States)

    Schopp, Pascal; Müller, Dominik; Technow, Frank; Melchinger, Albrecht E

    2017-01-01

    Synthetics play an important role in quantitative genetic research and plant breeding, but few studies have investigated the application of genomic prediction (GP) to these populations. Synthetics are generated by intermating a small number of parents ([Formula: see text] and thereby possess unique genetic properties, which make them especially suited for systematic investigations of factors contributing to the accuracy of GP. We generated synthetics in silico from [Formula: see text]2 to 32 maize (Zea mays L.) lines taken from an ancestral population with either short- or long-range linkage disequilibrium (LD). In eight scenarios differing in relatedness of the training and prediction sets and in the types of data used to calculate the relationship matrix (QTL, SNPs, tag markers, and pedigree), we investigated the prediction accuracy (PA) of Genomic best linear unbiased prediction (GBLUP) and analyzed contributions from pedigree relationships captured by SNP markers, as well as from cosegregation and ancestral LD between QTL and SNPs. The effects of training set size [Formula: see text] and marker density were also studied. Sampling few parents ([Formula: see text]) generates substantial sample LD that carries over into synthetics through cosegregation of alleles at linked loci. For fixed [Formula: see text], [Formula: see text] influences PA most strongly. If the training and prediction set are related, using [Formula: see text] parents yields high PA regardless of ancestral LD because SNPs capture pedigree relationships and Mendelian sampling through cosegregation. As [Formula: see text] increases, ancestral LD contributes more information, while other factors contribute less due to lower frequencies of closely related individuals. For unrelated prediction sets, only ancestral LD contributes information and accuracies were poor and highly variable for [Formula: see text] due to large sample LD. For large [Formula: see text], achieving moderate accuracy requires

  11. El sentido cultural del cuidado en casa del enfermo

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    Marina Sánches-Sanabria

    2008-12-01

    Full Text Available Esta investigación tiene un diseño cualitativo descriptivo, transversal para comprender las diferencias existentes en los conocimientos, actitudes y prácticas influidas por la percepción o sentido cultural de cuidar del cuidador primario, como elemento básico para caracterizar elementos culturales presentes en el ambiente de cuidado al enfermo o discapacitado que está en casa a través de la indagación profunda de la percepción y sentimientos que tiene tanto el cuidador primario como el ser cuidado en casa. Se realizó con los usuarios inscritos del Programa de Promoción y Prevención de la indagación profunda de la percepción y sentimientos Universidad Popular del Cesar (IPS-UPC de los enfermos crónicos y discapacitados a nivel comunitario del grupo extramural de la comuna cinco y del Hospital Eduardo Arredondo Daza de la ciudad de Valledupar, Colombia. El valor de realizar este proyecto, está en desocultar los múltiples significados que en la realidad vivida por los seres cuidadores primarios y en los seres cuidados; son esas distintas formas de percibir la existencia, influido por el conocimiento de lo ancestral, los sentimientos y la sabiduría de la cultura que cada uno posee para expresarse en las múltiples formas que el cuidado lo acontece y lo requiere para dar el sentido cultural característico y diferenciado que se percibe en el modo de cuidar y la satisfacción de quien lo recibe y lo ofrece. Este aspecto fue valioso para la comunidad académica del programa de enfermería, porque ubicó epistémicamente la transculturalidad del cuidado como una mirada y forma de enseñar transdisciplinariamente, enseñando y ofreciendo el cuidado desde la cultura, sentimientos y pensamientos del ser cuidado para el mantenimiento de la vida y la salud, en la que estudiantes de enfermeria desde sus primeras experiencias formativas deben incursionar en la intervención holística que se requiere en el cuidado de la salud y de la vida.

  12. Effectiveness of ancestral irradiation on the direct and correlated responses to selection for body weight in rats

    International Nuclear Information System (INIS)

    Gianola, D.

    1975-01-01

    The effects of ancestral irradiation of rat spermatogonia (a cumulative total of 4050 r of x-rays) were studied in a highly inbred line of rats to explore the feasibility of using irradiation to enhance the effectiveness of selection. Six generations after irradiation was terminated, a selection experiment for body weight at six weeks of age was started in both ancestrally irradiated and non-irradiated populations. There were two non-contemporaneous replicates in each of the populations. Within each of the ancestral treatment-replicate combinations one line was selected for high, one for low body weight at six weeks of age, and a third line was maintained by random selection. In each line, avoidance of mating of animals with grandparents in common was attempted. Data on the first ten progeny generations of selection were included in this study. Five types of covariances among relatives were used to estimate causal components of variance for five different genetic models within the ''non-irradiated'' and ''irradiated'' randomly selected models. The parameters in the genetic models were estimated by generalized least-squares. This analysis suggested that a genetic model including direct genetic and maternal genetic effects was adequate to describe the body weights at 3, 6 and 10 weeks of age and the weight gains between these ages. Ancestral irradiation seemed to have enhanced the maternal genetic variance and the covariance between the direct genetic and the maternal genetic effects. On the basis of the above analysis, it was deduced that mass selection should have been more effective in the descendants of irradiated males than in those of the non-irradiated males as a consequence of greater phenotypic variability in their progeny and an enhancement in the regression of the genetic value on the selection criterion

  13. Genotype-based ancestral background consistently predicts efficacy and side effects across treatments in CATIE and STAR*D.

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    Daniel E Adkins

    Full Text Available Only a subset of patients will typically respond to any given prescribed drug. The time it takes clinicians to declare a treatment ineffective leaves the patient in an impaired state and at unnecessary risk for adverse drug effects. Thus, diagnostic tests robustly predicting the most effective and safe medication for each patient prior to starting pharmacotherapy would have tremendous clinical value. In this article, we evaluated the use of genetic markers to estimate ancestry as a predictive component of such diagnostic tests. We first estimated each patient's unique mosaic of ancestral backgrounds using genome-wide SNP data collected in the Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE (n = 765 and the Sequenced Treatment Alternatives to Relieve Depression (STAR*D (n = 1892. Next, we performed multiple regression analyses to estimate the predictive power of these ancestral dimensions. For 136/89 treatment-outcome combinations tested in CATIE/STAR*D, results indicated 1.67/1.84 times higher median test statistics than expected under the null hypothesis assuming no predictive power (p<0.01, both samples. Thus, ancestry showed robust and pervasive correlations with drug efficacy and side effects in both CATIE and STAR*D. Comparison of the marginal predictive power of MDS ancestral dimensions and self-reported race indicated significant improvements to model fit with the inclusion of MDS dimensions, but mixed evidence for self-reported race. Knowledge of each patient's unique mosaic of ancestral backgrounds provides a potent immediate starting point for developing algorithms identifying the most effective and safe medication for a wide variety of drug-treatment response combinations. As relatively few new psychiatric drugs are currently under development, such personalized medicine offers a promising approach toward optimizing pharmacotherapy for psychiatric conditions.

  14. Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals

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    Keightley Peter D

    2008-09-01

    Full Text Available Abstract Background Molecular evolutionary studies in mammals often estimate nucleotide substitution rates within and outside CpG dinucleotides separately. Frequently, in alignments of two sequences, the division of sites into CpG and non-CpG classes is based simply on the presence or absence of a CpG dinucleotide in either sequence, a procedure that we refer to as CpG/non-CpG assignment. Although it likely that this procedure is biased, it is generally assumed that the bias is negligible if species are very closely related. Results Using simulations of DNA sequence evolution we show that assignment of the ancestral CpG state based on the simple presence/absence of the CpG dinucleotide can seriously bias estimates of the substitution rate, because many true non-CpG changes are misassigned as CpG. Paradoxically, this bias is most severe between closely related species, because a minimum of two substitutions are required to misassign a true ancestral CpG site as non-CpG whereas only a single substitution is required to misassign a true ancestral non-CpG site as CpG in a two branch tree. We also show that CpG misassignment bias differentially affects fourfold degenerate and noncoding sites due to differences in base composition such that fourfold degenerate sites can appear to be evolving more slowly than noncoding sites. We demonstrate that the effects predicted by our simulations occur in a real evolutionary setting by comparing substitution rates estimated from human-chimp coding and intronic sequence using CpG/non-CpG assignment with estimates derived from a method that is largely free from bias. Conclusion Our study demonstrates that a common method of assigning sites into CpG and non CpG classes in pairwise alignments is seriously biased and recommends against the adoption of ad hoc methods of ancestral state assignment.

  15. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific

    International Nuclear Information System (INIS)

    Rapacz, J.; Hasler-Rapacz, J.O.; Chen, L.; Wu, Mingjiuan; Schumaker, V.N.; Butler-Brunner, E.; Butler, R.

    1991-01-01

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes

  16. Identification of the ancestral haplotype for apolipoprotein B suggests an African origin of Homo sapiens sapiens and traces their subsequent migration to Europe and the Pacific

    Energy Technology Data Exchange (ETDEWEB)

    Rapacz, J.; Hasler-Rapacz, J.O. (Univ. of Wisconsin, Madison (United States)); Chen, L.; Wu, Mingjiuan; Schumaker, V.N. (Univ. of California, Los Angeles (United States)); Butler-Brunner, E.; Butler, R. (Swiss Red Cross Blood Transfusion Service, Bern (Switzerland))

    1991-02-15

    The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes.

  17. The ancestral chromosomes of Dromiciops gliroides (Microbiotheridae), and its bearings on the karyotypic evolution of American marsupials.

    Science.gov (United States)

    Suárez-Villota, Elkin Y; Haro, Ronie E; Vargas, Rodrigo A; Gallardo, Milton H

    2016-01-01

    The low-numbered 14-chromosome karyotype of marsupials has falsified the fusion hypothesis claiming ancestrality from a 22-chromosome karyotype. Since the 14-chromosome condition of the relict Dromiciops gliroides is reminecent of ancestrality, its interstitial traces of past putative fusions and heterochromatin banding patterns were studied and added to available marsupials' cytogenetic data. Fluorescent in situ hybridization (FISH) and self-genomic in situ hybridization (self-GISH) were used to detect telomeric and repetitive sequences, respectively. These were complemented with C-, fluorescent banding, and centromere immunodetection over mitotic spreads. The presence of interstitial telomeric sequences (ITS) and diploid numbers were reconstructed and mapped onto the marsupial phylogenetic tree. No interstitial, fluorescent signals, but clearly stained telomeric regions were detected by FISH and self-GISH. Heterochromatin distribution was sparse in the telomeric/subtelomeric regions of large submetacentric chromosomes. Large AT-rich blocks were detected in the long arm of four submetacentrics and CG-rich block in the telomeric regions of all chromosomes. The ancestral reconstructions both ITS presence and diploid numbers suggested that ITS are unrelated to fusion events. Although the lack of interstitial signals in D. gliroides' karyotype does not prove absence of past fusions, our data suggests its non-rearranged plesiomorphic condition.

  18. Unexpectedly High Proportion of Ancestral Manu Genotype Mycobacterium tuberculosis Strains Cultured from Tuberculosis Patients in Egypt ▿

    Science.gov (United States)

    Helal, Zeinab H.; El-Din Ashour, Mohamed Seif; Eissa, Somaia A.; Abd-Elatef, Ghanem; Zozio, Thierry; Babapoor, Sankhiros; Rastogi, Nalin; Khan, Mazhar I.

    2009-01-01

    Tuberculosis is one of the important public health problems in Egypt. However, limited information on the Mycobacterium tuberculosis genotypes circulating in Egypt is available. A total of 151 M. tuberculosis strains were characterized by spoligotyping. The results revealed that 74.8% of M. tuberculosis isolates grouped into 13 different clusters, while 25.2% had unique spoligotype patterns. Comparison with an international spoligotyping database (the SITVIT2 database) showed that types SIT53 (T1 variant) and SIT54 (Manu2 variant) were the most common types between cluster groups. In addition, new shared types SIT2977, SIT2978, and SIT2979 were observed. The results identified for the first time an unusually high proportion of ancestral Manu strains of M. tuberculosis from patients in Egypt. The percentage of the Manu clade in this study (27.15%) was significantly higher than its overall representation of 0.4% in the SITVIT2 database. We show that in Egypt tuberculosis is caused by a predominant M. tuberculosis genotype belonging to the ancestral Manu lineage which could be a missing link in the split between ancestral and modern tubercle bacilli during the evolution of M. tuberculosis. PMID:19553569

  19. When ancestral heritage is a source of discomfort: culture, pre-object relatedness, and self-alienation.

    Science.gov (United States)

    Kradin, Richard L

    2012-04-01

    The ancestral claims on an individual can evoke mental conflict when they involve separating from an ethnic group whose beliefs and customs are devalued by the dominant culture. However, these claims are engraved on the psyche early in development by caretakers to the level of pre-object relatedness, where contents and affect tones are implicit and may be unavailable for later psychoanalytical interventions. In addition, as the anthropologist Clifford Geertz notes, one's culture of origin precedes the development of psyche and creates its own set of claims that must be renegotiated when one encounters a different domain of cultural symbols, a confrontation that can produce psychological dissonance and self-alienation. In this paper, three cases are examined in which mental conflicts were evoked by attempts at divesting ancestral claims in response to conscious efforts to assimilate into the dominant culture. These patients suffered from separation guilt and unstable self-esteem and reported dream imagery suggesting psychological imbalance. The requirement to carefully delineate the ancestral claims on psyche as well as those contents and affects that may not be accessible to therapeutic intervention is emphasized, and the importance of compromise and acceptance with respect to the psychological demands of the unconscious are considered. 2012, The Society of Analytical Psychology.

  20. Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates.

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    Jia-Yu Chen

    2015-07-01

    Full Text Available While some human-specific protein-coding genes have been proposed to originate from ancestral lncRNAs, the transition process remains poorly understood. Here we identified 64 hominoid-specific de novo genes and report a mechanism for the origination of functional de novo proteins from ancestral lncRNAs with precise splicing structures and specific tissue expression profiles. Whole-genome sequencing of dozens of rhesus macaque animals revealed that these lncRNAs are generally not more selectively constrained than other lncRNA loci. The existence of these newly-originated de novo proteins is also not beyond anticipation under neutral expectation, as they generally have longer theoretical lifespan than their current age, due to their GC-rich sequence property enabling stable ORFs with lower chance of non-sense mutations. Interestingly, although the emergence and retention of these de novo genes are likely driven by neutral forces, population genetics study in 67 human individuals and 82 macaque animals revealed signatures of purifying selection on these genes specifically in human population, indicating a proportion of these newly-originated proteins are already functional in human. We thus propose a mechanism for creation of functional de novo proteins from ancestral lncRNAs during the primate evolution, which may contribute to human-specific genetic novelties by taking advantage of existed genomic contexts.

  1. Toxic and nontoxic components of botulinum neurotoxin complex are evolved from a common ancestral zinc protein

    International Nuclear Information System (INIS)

    Inui, Ken; Sagane, Yoshimasa; Miyata, Keita; Miyashita, Shin-Ichiro; Suzuki, Tomonori; Shikamori, Yasuyuki; Ohyama, Tohru; Niwa, Koichi; Watanabe, Toshihiro

    2012-01-01

    Highlights: ► BoNT and NTNHA proteins share a similar protein architecture. ► NTNHA and BoNT were both identified as zinc-binding proteins. ► NTNHA does not have a classical HEXXH zinc-coordinating motif similar to that found in all serotypes of BoNT. ► Homology modeling implied probable key residues involved in zinc coordination. -- Abstract: Zinc atoms play an essential role in a number of enzymes. Botulinum neurotoxin (BoNT), the most potent toxin known in nature, is a zinc-dependent endopeptidase. Here we identify the nontoxic nonhemagglutinin (NTNHA), one of the BoNT-complex constituents, as a zinc-binding protein, along with BoNT. A protein structure classification database search indicated that BoNT and NTNHA share a similar domain architecture, comprising a zinc-dependent metalloproteinase-like, BoNT coiled-coil motif and concanavalin A-like domains. Inductively coupled plasma-mass spectrometry analysis demonstrated that every single NTNHA molecule contains a single zinc atom. This is the first demonstration of a zinc atom in this protein, as far as we know. However, the NTNHA molecule does not possess any known zinc-coordinating motif, whereas all BoNT serotypes possess the classical HEXXH motif. Homology modeling of the NTNHA structure implied that a consensus K-C-L-I-K-X 35 -D sequence common among all NTNHA serotype molecules appears to coordinate a single zinc atom. These findings lead us to propose that NTNHA and BoNT may have evolved distinct functional specializations following their branching out from a common ancestral zinc protein.

  2. Allelic lineages of the ficolin genes (FCNs are passed from ancestral to descendant primates.

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    Tina Hummelshøj

    Full Text Available The ficolins recognize carbohydrates and acetylated compounds on microorganisms and dying host cells and are able to activate the lectin pathway of the complement system. In humans, three ficolin genes have been identified: FCN1, FCN2 and FCN3, which encode ficolin-1, ficolin-2 and ficolin-3, respectively. Rodents have only two ficolins designated ficolin-A and ficolin-B that are closely related to human ficolin-1, while the rodent FCN3 orthologue is a pseudogene. Ficolin-2 and ficolin-3 have so far only been observed in humans. Thus, we performed a systematic investigation of the FCN genes in non-human primates. The exons and intron-exon boundaries of the FCN1-3 genes were sequenced in the following primate species: chimpanzee, gorilla, orangutan, rhesus macaque, cynomolgus macaque, baboon and common marmoset. We found that the exon organisation of the FCN genes was very similar between all the non-human primates and the human FCN genes. Several variations in the FCN genes were found in more than one primate specie suggesting that they were carried from one species to another including humans. The amino acid diversity of the ficolins among human and non-human primate species was estimated by calculating the Shannon entropy revealing that all three proteins are generally highly conserved. Ficolin-1 and ficolin-2 showed the highest diversity, whereas ficolin-3 was more conserved. Ficolin-2 and ficolin-3 were present in non-human primate sera with the same characteristic oligomeric structures as seen in human serum. Taken together all the FCN genes show the same characteristics in lower and higher primates. The existence of trans-species polymorphisms suggests that different FCN allelic lineages may be passed from ancestral to descendant species.

  3. Does body posture influence hand preference in an ancestral primate model?

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    Leliveld Lisette

    2011-02-01

    Full Text Available Abstract Background The origin of human handedness and its evolution in primates is presently under debate. Current hypotheses suggest that body posture (postural origin hypothesis and bipedalism hypothesis have an important impact on the evolution of handedness in primates. To gain insight into the origin of manual lateralization in primates, we studied gray mouse lemurs, suggested to represent the most ancestral primate condition. First, we investigated hand preference in a simple food grasping task to explore the importance of hand usage in a natural foraging situation. Second, we explored the influence of body posture by applying a forced food grasping task with varying postural demands (sit, biped, cling, triped. Results The tested mouse lemur population did not prefer to use their hands alone to grasp for food items. Instead, they preferred to pick them up using a mouth-hand combination or the mouth alone. If mouth usage was inhibited, they showed an individual but no population level handedness for all four postural forced food grasping tasks. Additionally, we found no influence of body posture on hand preference in gray mouse lemurs. Conclusion Our results do not support the current theories of primate handedness. Rather, they propose that ecological adaptation indicated by postural habit and body size of a given species has an important impact on hand preference in primates. Our findings suggest that small-bodied, quadrupedal primates, adapted to the fine branch niche of dense forests, prefer mouth retrieval of food and are less manually lateralized than large-bodied species which consume food in a more upright, and less stable body posture.

  4. Evolutionary history of Lissotriton helveticus: multilocus assessment of ancestral vs. recent colonization of the Iberian Peninsula.

    Science.gov (United States)

    Recuero, Ernesto; García-París, Mario

    2011-07-01

    The Pleistocene was characterized by climatic changes that greatly altered the distribution of organisms. Population extinctions, bottlenecks, isolation, range expansions and contractions were often associated with glaciations, leaving signatures in the spatial patterns of genetic diversity across species. Lissotriton helveticus belongs to a Pan-European lineage of newts that were strongly affected by glaciations and represent an excellent model to analyse the effect of generalized climatic changes in phylogeographic patterns. We studied the genetic diversity of the species using data from two mitochondrial and three nuclear genes analyzed in a Bayesian phylogenetic framework to investigate the historical processes shaping spatial patterns of genetic diversity. Mitochondrial haplotypes cluster in four different groups present in the Iberian Peninsula and of Pleistocene origin, probably by allopatric fragmentation. Nuclear genes present no obvious geographic structure patterns, suggesting gene flow and generalized incomplete lineage sorting. Populations north of the Pyrenees are closely related to those from northeastern Iberia, suggesting recent range expansion from this region. Historical demographic analyses indicate a demographic expansion starting about 100,000years ago and more recent population declines. Compared to other Lissotriton species, L. helveticus includes only relatively young genetic lineages, suggesting a Central European pre-Pleistocene distribution followed by complete extirpation of the species during glaciations in that area. Historical demographic trends in the Iberian Peninsula are reversed with respect to the more Mediterranean species Lissotriton boscai, indicating different responses of both species to climate changes. Diversity patterns among Lissotriton species seem to be defined by four main factors: ancestral distributions, colonization capabilities, interactions with other species and effective population sizes. Differences in these

  5. Paraphyly of organelle DNAs in Cycas Sect. Asiorientales due to ancient ancestral polymorphisms.

    Science.gov (United States)

    Chiang, Yu-Chung; Hung, Kuo-Hsiang; Moore, Shann-Jye; Ge, Xue-Jun; Huang, Shong; Hsu, Tsai-Wen; Schaal, Barbara A; Chiang, Ty

    2009-07-10

    This study addresses the apportionment of genetic diversity between Cycas revoluta and C. taitungensis, species that constitute the section Asiorientales and represent a unique, basal lineage of the Laurasian genus Cycas. Fossil evidence indicates divergence of the section from the rest of Cycas at least 30 million years ago. Geographically, C. taitungensis is limited to Taiwan whereas C. revoluta is found in the Ryukyu Archipelago and on mainland China. The phylogenies of ribosomal ITS region of mtDNA and the intergenic spacer between atpB and rbcL genes of cpDNA were reconstructed. Phylogenetic analyses revealed paraphyly of both loci in the two species and also in the section Asiorientales. The lack of reciprocal monophyly between these long isolated sections is likely due to persistent shared ancestral polymorphisms. Molecular dating estimated that mt- and cp DNA lineages coalesced to the most recent common ancestors (TMRCA) about 327 (mt) and 204 MYA (cp), corresponding with the divergence of cycad sections in the Mesozoic. Fates of newly derived mutations of cycads follow Klopfstein et al.'s surfing model where the majority of new mutations do not spread geographically and remain at low frequencies or are eventually lost by genetic drift. Only successful 'surfing mutations' reach very high frequencies and occupy a large portion of a species range. These mutations exist as dominant cytotypes across populations and species. Geographical subdivision is lacking in both species, even though recurrent gene flow by both pollen and seed is severely limited. In total, the contrasting levels between historical and ongoing gene flow, large population sizes, a long lifespan, and slow mutation rates in both organelle DNAs have all likely contributed to the unusually long duration of paraphyly in cycads.

  6. Regionalization of the Shark Hindbrain: A Survey of an Ancestral Organization

    Science.gov (United States)

    Rodríguez-Moldes, Isabel; Carrera, Ivan; Pose-Méndez, Sol; Quintana-Urzainqui, Idoia; Candal, Eva; Anadón, Ramón; Mazan, Sylvie; Ferreiro-Galve, Susana

    2011-01-01

    Cartilaginous fishes (chondrichthyans) represent an ancient radiation of vertebrates currently considered the sister group of the group of gnathostomes with a bony skeleton that gave rise to land vertebrates. This out-group position makes chondrichthyans essential in assessing the ancestral organization of the brain of jawed vertebrates. To gain knowledge about hindbrain evolution we have studied its development in a shark, the lesser spotted dogfish Scyliorhinus canicula by analyzing the expression of some developmental genes and the origin and distribution of specific neuronal populations, which may help to identify hindbrain subdivisions and boundaries and the topology of specific cell groups. We have characterized three developmental periods that will serve as a framework to compare the development of different neuronal systems and may represent a suitable tool for comparing the absolute chronology of development among vertebrates. The expression patterns of Pax6, Wnt8, and HoxA2 genes in early embryos of S. canicula showed close correspondence to what has been described in other vertebrates and helped to identify the anterior rhombomeres. Also in these early embryos, the combination of Pax6 with protein markers of migrating neuroblasts (DCX) and early differentiating neurons (general: HuC/D; neuron type specific: GAD, the GABA synthesizing enzyme) revealed the organization of S. canicula hindbrain in both transverse segmental units corresponding to visible rhombomeres and longitudinal columns. Later in development, when the interrhombomeric boundaries fade away, accurate information about S. canicula hindbrain subdivisions was achieved by comparing the expression patterns of Pax6 and GAD, serotonin (serotoninergic neurons), tyrosine hydroxylase (catecholaminergic neurons), choline acetyltransferase (cholinergic neurons), and calretinin (a calcium-binding protein). The patterns observed revealed many topological correspondences with other vertebrates and led to

  7. Toxic and nontoxic components of botulinum neurotoxin complex are evolved from a common ancestral zinc protein

    Energy Technology Data Exchange (ETDEWEB)

    Inui, Ken [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo 102-8472 (Japan); Sagane, Yoshimasa [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Miyata, Keita [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo 102-8472 (Japan); Miyashita, Shin-Ichiro [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Suzuki, Tomonori [Department of Bacteriology, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 2-5-1 Shikata-cho, Kita-ku, Okayama 700-8558 (Japan); Shikamori, Yasuyuki [Agilent Technologies International Japan, Ltd. Takaura-cho 9-1, Hachioji-shi, Tokyo 192-0033 (Japan); Ohyama, Tohru; Niwa, Koichi [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan); Watanabe, Toshihiro, E-mail: t-watana@bioindustry.nodai.ac.jp [Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture, 196 Yasaka, Abashiri 099-2493 (Japan)

    2012-03-16

    Highlights: Black-Right-Pointing-Pointer BoNT and NTNHA proteins share a similar protein architecture. Black-Right-Pointing-Pointer NTNHA and BoNT were both identified as zinc-binding proteins. Black-Right-Pointing-Pointer NTNHA does not have a classical HEXXH zinc-coordinating motif similar to that found in all serotypes of BoNT. Black-Right-Pointing-Pointer Homology modeling implied probable key residues involved in zinc coordination. -- Abstract: Zinc atoms play an essential role in a number of enzymes. Botulinum neurotoxin (BoNT), the most potent toxin known in nature, is a zinc-dependent endopeptidase. Here we identify the nontoxic nonhemagglutinin (NTNHA), one of the BoNT-complex constituents, as a zinc-binding protein, along with BoNT. A protein structure classification database search indicated that BoNT and NTNHA share a similar domain architecture, comprising a zinc-dependent metalloproteinase-like, BoNT coiled-coil motif and concanavalin A-like domains. Inductively coupled plasma-mass spectrometry analysis demonstrated that every single NTNHA molecule contains a single zinc atom. This is the first demonstration of a zinc atom in this protein, as far as we know. However, the NTNHA molecule does not possess any known zinc-coordinating motif, whereas all BoNT serotypes possess the classical HEXXH motif. Homology modeling of the NTNHA structure implied that a consensus K-C-L-I-K-X{sub 35}-D sequence common among all NTNHA serotype molecules appears to coordinate a single zinc atom. These findings lead us to propose that NTNHA and BoNT may have evolved distinct functional specializations following their branching out from a common ancestral zinc protein.

  8. The vomeronasal complex of nocturnal strepsirhines and implications for the ancestral condition in primates.

    Science.gov (United States)

    Garrett, Eva C; Dennis, John C; Bhatnagar, Kunwar P; Durham, Emily L; Burrows, Anne M; Bonar, Christopher J; Steckler, Natalie K; Morrison, Edward E; Smith, Timothy D

    2013-12-01

    This study investigates the vomeronasal organ in extant nocturnal strepsirhines as a model for ancestral primates. Cadaveric samples from 10 strepsirhine species, ranging from fetal to adult ages, were studied histologically. Dimensions of structures in the vomeronasal complex, such as the vomeronasal neuroepithelium (VNNE) and vomeronasal cartilage (VNC) were measured in serial sections and selected specimens were studied immunohistochemically to determine physiological aspects of the vomeronasal sensory neurons (VSNs). Osteological features corresponding to vomeronasal structures were studied histologically and related to 3-D CT reconstructions. The VNC consistently rests in a depression on the palatal portion of the maxilla, which we refer to as the vomeronasal groove (VNG). Most age comparisons indicate that in adults VNNE is about twice the length compared with perinatal animals. In VNNE volume, adults are 2- to 3-fold larger compared with perinatal specimens. Across ages, a strong linear relationship exists between VNNE dimensions and body length, mass, and midfacial length. Results indicate that the VNNE of nocturnal strepsirhines is neurogenic postnatally based on GAP43 expression. In addition, based on Olfactory Marker Protein expression, terminally differentiated VSNs are present in the VNNE. Therefore, nocturnal strepsirhines have basic similarities to rodents in growth and maturational characteristics of VSNs. These results indicate that a functional vomeronasal system is likely present in all nocturnal strepsirhines. Finally, given that osteological features such as the VNG are visible on midfacial bones, primate fossils can be assessed to determine whether primate ancestors possessed a vomeronasal complex morphologically similar to that of modern nocturnal strepsirhines. Copyright © 2013 Wiley Periodicals, Inc.

  9. Ancestral morphology of crown-group molluscs revealed by a new Ordovician stem aculiferan.

    Science.gov (United States)

    Vinther, Jakob; Parry, Luke; Briggs, Derek E G; Van Roy, Peter

    2017-02-23

    Exceptionally preserved fossils provide crucial insights into extinct body plans and organismal evolution. Molluscs, one of the most disparate animal phyla, radiated rapidly during the early Cambrian period (approximately 535-520 million years ago (Ma)). The problematic fossil taxa Halkieria and Orthrozanclus (grouped in Sachitida) have been assigned variously to stem-group annelids, brachiopods, stem-group molluscs or stem-group aculiferans (Polyplacophora and Aplacophora), but their affinities have remained controversial owing to a lack of preserved diagnostic characters. Here we describe a new early sachitid, Calvapilosa kroegeri gen. et sp. nov. from the Fezouata biota of Morocco (Early Ordovician epoch, around 478 Ma). The new taxon is characterized by the presence of a single large anterior shell plate and polystichous radula bearing a median tooth and several lateral and uncinal teeth in more than 125 rows. Its flattened body is covered by hollow spinose sclerites, and a smooth, ventral girdle flanks an extensive mantle cavity. Phylogenetic analyses resolve C. kroegeri as a stem-group aculiferan together with other single-plated forms such as Maikhanella (Siphogonuchites) and Orthrozanclus; Halkieria is recovered closer to the aculiferan crown. These genera document the stepwise evolution of the aculiferan body plan from forms with a single, almost conchiferan-like shell through two-plated taxa such as Halkieria, to the eight-plated crown-group aculiferans. C. kroegeri therefore provides key evidence concerning the long debate about the crown molluscan affinities of sachitids. This new discovery strongly suggests that the possession of only a single calcareous shell plate and the presence of unmineralised sclerites are plesiomorphic (an ancestral trait) for the molluscan crown.

  10. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.

    Science.gov (United States)

    van Baren, Marijke J; Bachy, Charles; Reistetter, Emily Nahas; Purvine, Samuel O; Grimwood, Jane; Sudek, Sebastian; Yu, Hang; Poirier, Camille; Deerinck, Thomas J; Kuo, Alan; Grigoriev, Igor V; Wong, Chee-Hong; Smith, Richard D; Callister, Stephen J; Wei, Chia-Lin; Schmutz, Jeremy; Worden, Alexandra Z

    2016-03-31

    Prasinophytes are widespread marine green algae that are related to plants. Cellular abundance of the prasinophyte Micromonas has reportedly increased in the Arctic due to climate-induced changes. Thus, studies of these unicellular eukaryotes are important for marine ecology and for understanding Viridiplantae evolution and diversification. We generated evidence-based Micromonas gene models using proteomics and RNA-Seq to improve prasinophyte genomic resources. First, sequences of four chromosomes in the 22 Mb Micromonas pusilla (CCMP1545) genome were finished. Comparison with the finished 21 Mb genome of Micromonas commoda (RCC299; named herein) shows they share ≤8,141 of ~10,000 protein-encoding genes, depending on the analysis method. Unlike RCC299 and other sequenced eukaryotes, CCMP1545 has two abundant repetitive intron types and a high percent (26 %) GC splice donors. Micromonas has more genus-specific protein families (19 %) than other genome sequenced prasinophytes (11 %). Comparative analyses using predicted proteomes from other prasinophytes reveal proteins likely related to scale formation and ancestral photosynthesis. Our studies also indicate that peptidoglycan (PG) biosynthesis enzymes have been lost in multiple independent events in select prasinophytes and plants. However, CCMP1545, polar Micromonas CCMP2099 and prasinophytes from other classes retain the entire PG pathway, like moss and glaucophyte algae. Surprisingly, multiple vascular plants also have the PG pathway, except the Penicillin-Binding Protein, and share a unique bi-domain protein potentially associated with the pathway. Alongside Micromonas experiments using antibiotics that halt bacterial PG biosynthesis, the findings highlight unrecognized phylogenetic complexity in PG-pathway retention and implicate a role in chloroplast structure or division in several extant Viridiplantae lineages. Extensive differences in gene loss and architecture between related prasinophytes underscore

  11. Are Hox genes ancestrally involved in axial patterning? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria.

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    Roxane Chiori

    Full Text Available BACKGROUND: The early evolution and diversification of Hox-related genes in eumetazoans has been the subject of conflicting hypotheses concerning the evolutionary conservation of their role in axial patterning and the pre-bilaterian origin of the Hox and ParaHox clusters. The diversification of Hox/ParaHox genes clearly predates the origin of bilaterians. However, the existence of a "Hox code" predating the cnidarian-bilaterian ancestor and supporting the deep homology of axes is more controversial. This assumption was mainly based on the interpretation of Hox expression data from the sea anemone, but growing evidence from other cnidarian taxa puts into question this hypothesis. METHODOLOGY/PRINCIPAL FINDINGS: Hox, ParaHox and Hox-related genes have been investigated here by phylogenetic analysis and in situ hybridisation in Clytia hemisphaerica, an hydrozoan species with medusa and polyp stages alternating in the life cycle. Our phylogenetic analyses do not support an origin of ParaHox and Hox genes by duplication of an ancestral ProtoHox cluster, and reveal a diversification of the cnidarian HOX9-14 genes into three groups called A, B, C. Among the 7 examined genes, only those belonging to the HOX9-14 and the CDX groups exhibit a restricted expression along the oral-aboral axis during development and in the planula larva, while the others are expressed in very specialised areas at the medusa stage. CONCLUSIONS/SIGNIFICANCE: Cross species comparison reveals a strong variability of gene expression along the oral-aboral axis and during the life cycle among cnidarian lineages. The most parsimonious interpretation is that the Hox code, collinearity and conservative role along the antero-posterior axis are bilaterian innovations.

  12. Common ancestral origin of pemphigus vulgaris in Jews and Spaniards: a study using microsatellite markers.

    Science.gov (United States)

    Loewenthal, R; Slomov, Y; Gonzalez-Escribano, M F; Goldberg, I; Korostishevsky, M; Brenner, S; Nunez-Roldan, A; Conejo-Mir, J S; Gazit, E

    2004-04-01

    Pemphigus is a group of autoimmune blistering diseases of the skin and mucous membranes. The association of pemphigus with human leukocyte antigen (HLA) is widely accepted. It was described in many ethnic groups and in most countries of the world. Studies showed that the associated HLA haplotype in Jewish pemphigus vulgaris (PV) patients is HLA-B38, DRB1*0402, and DQB1*0302; or HLA-B35, DRB1*0402, and DQB1*0302. Similar associations with class II genes were found in Spanish non-Jewish PV patients. As Jews lived in Spain for hundreds of years and many converted to Christianity, the presence of the same HLA haplotype in the Jewish and Spanish PV suggests that they may share the same founder. Microsatellite markers which span the entire major histocompatibility complex (MHC) locus were used as genetic probes. They were utilized to dissect the MHC region in the search for possible common haplotypes, besides HLA, which may provide an answer to this question. It was found that in both cohorts, in addition to HLA class II genes, there are probably genes in the class I region which are associated with PV. Alleles belonging to the associated markers were used to construct haplotypes and to estimate genetic distances. The distance between the two PV cohorts is relatively short, but the distance between the Jewish patients and the Jewish controls is greater compared to the distance between Spanish patients and Spanish controls. In both PV populations, the same microsatellite haplotypes in addition to a common class II haplotype were found, suggesting that both patient populations originated from the same genetic stock and, therefore, share the same ancestral disease gene.

  13. The 8.1 ancestral MHC haplotype is strongly associated with colorectal cancer risk.

    Science.gov (United States)

    Tóth, Eva Katalin; Kocsis, Judit; Madaras, Balázs; Bíró, Adrienn; Pocsai, Zsuzsa; Fust, George; Blaskó, Bernadett; Karádi, István; Adány, Róza; Laki, Judit

    2007-10-15

    Many recent data indicate that some alleles encoded in the central major histocompatibility complex (MHC) region (Class III) of short arm of chromosome 6 may modify the risk of cancer development. Therefore we determined 4 single nucleotide polymorphisms (SNPs) of this region (TNF-alpha -308 G > A, RAGE -429 T > C, HSP70-2 -1267 A > G, LTA 252 A > G) in genomic DNA samples from 183 Hungarian patients with colorectal cancer and 141 age matched control subjects representing the Hungarian population of the same age and gender. No significant differences were found in either SNP tested. When, however, three- or four-locus haplotypes consisting of known constituents of the so-called 8.1 ancestral haplotype (8.1AH) were considered, marked differences were observed. Frequency of TNF-alpha -308A, RAGE -429C, HSP70-2 -1267G, LTA 252G (8.1AH) haplotype was significantly (p = 0.006) more frequent (19.1%) among patients than in the controls (7.7%). Age- and gender-adjusted ratio of the 8.1AH carriers vs. non-carriers to have colorectal cancer was 2.514 (1.130-5.594). This risk was higher in cancer-indicate that carriers of the 8.1AH, encoding for an altered immune response and known to be associated with alterations of several immune functions and autoimmune diseases have an increased risk for some cancer types. These findings may contribute to better understanding how the defense mechanisms against tumors could be enhanced/strengthened. (c) 2007 Wiley-Liss, Inc.

  14. Complete tribal sampling reveals basal split in Muscidae (Diptera), confirms saprophagy as ancestral feeding mode, and reveals an evolutionary correlation between instar numbers and carnivory

    DEFF Research Database (Denmark)

    Kutty, Sujatha Narayanan; Pont, Adrian C.; Meier, Rudolf

    2014-01-01

    split within this family. The ancestral larval feeding habit is reconstructed to be saprophagy with more specialised coprophagous saprophagy, phytophagy, and carnivory evolving multiple times from saprophagous ancestors. The origins of carnivory in larvae are significantly correlated with a reduction...

  15. La modernidad, el cuidado de la salud y la cultura ancestral.

    OpenAIRE

    Ana Cecilia Becerra

    2009-01-01

    La modernidad es tanto un período histórico como un concepto filosófico y sociológico que impuso la razón y el método formal sobre todos los actos políticos, sociales y epistemológicos de las distintas culturas del mundo. La modernidad se construyó en su momento sobre el imaginario de la superioridad europea1 y durante el período colonial fue la causante del proceso avasallador de exterminio y de desconocimiento de las sociedades y culturas indígenas de América. Ella, con sus valores patriar...

  16. Ancestral role of Pax2/5/8 in molluscan brain and multimodal sensory system development.

    Science.gov (United States)

    Wollesen, Tim; Rodríguez Monje, Sonia Victoria; Todt, Christiane; Degnan, Bernard M; Wanninger, Andreas

    2015-10-28

    esthetes and the ampullary system of polyplacophorans as well as the eyes of cephalopods. Pax2/5/8-expressing cells are present in regions where the future sensory cells such as the polyplacophoran esthetes are situated and hence Pax2/5/8 expression probably predates sensory cell development during ontogeny. In mollusks, Pax2/5/8 is only expressed in derivatives of the ectoderm and hence an ancestral role in molluscan ectoderm differentiation is inferred.

  17. Reconstructed ancestral Myo-inositol-3-phosphate synthases indicate that ancestors of the Thermococcales and Thermotoga species were more thermophilic than their descendants.

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    Nicholas C Butzin

    Full Text Available The bacterial genomes of Thermotoga species show evidence of significant interdomain horizontal gene transfer from the Archaea. Members of this genus acquired many genes from the Thermococcales, which grow at higher temperatures than Thermotoga species. In order to study the functional history of an interdomain horizontally acquired gene we used ancestral sequence reconstruction to examine the thermal characteristics of reconstructed ancestral proteins of the Thermotoga lineage and its archaeal donors. Several ancestral sequence reconstruction methods were used to determine the possible sequences of the ancestral Thermotoga and Archaea myo-inositol-3-phosphate synthase (MIPS. These sequences were predicted to be more thermostable than the extant proteins using an established sequence composition method. We verified these computational predictions by measuring the activities and thermostabilities of purified proteins from the Thermotoga and the Thermococcales species, and eight ancestral reconstructed proteins. We found that the ancestral proteins from both the archaeal donor and the Thermotoga most recent common ancestor recipient were more thermostable than their descendants. We show that there is a correlation between the thermostability of MIPS protein and the optimal growth temperature (OGT of its host, which suggests that the OGT of the ancestors of these species of Archaea and the Thermotoga grew at higher OGTs than their descendants.

  18. Reconstructed ancestral Myo-inositol-3-phosphate synthases indicate that ancestors of the Thermococcales and Thermotoga species were more thermophilic than their descendants.

    Science.gov (United States)

    Butzin, Nicholas C; Lapierre, Pascal; Green, Anna G; Swithers, Kristen S; Gogarten, J Peter; Noll, Kenneth M

    2013-01-01

    The bacterial genomes of Thermotoga species show evidence of significant interdomain horizontal gene transfer from the Archaea. Members of this genus acquired many genes from the Thermococcales, which grow at higher temperatures than Thermotoga species. In order to study the functional history of an interdomain horizontally acquired gene we used ancestral sequence reconstruction to examine the thermal characteristics of reconstructed ancestral proteins of the Thermotoga lineage and its archaeal donors. Several ancestral sequence reconstruction methods were used to determine the possible sequences of the ancestral Thermotoga and Archaea myo-inositol-3-phosphate synthase (MIPS). These sequences were predicted to be more thermostable than the extant proteins using an established sequence composition method. We verified these computational predictions by measuring the activities and thermostabilities of purified proteins from the Thermotoga and the Thermococcales species, and eight ancestral reconstructed proteins. We found that the ancestral proteins from both the archaeal donor and the Thermotoga most recent common ancestor recipient were more thermostable than their descendants. We show that there is a correlation between the thermostability of MIPS protein and the optimal growth temperature (OGT) of its host, which suggests that the OGT of the ancestors of these species of Archaea and the Thermotoga grew at higher OGTs than their descendants.

  19. Allo-allo-triploid Sphagnum × falcatulum: single individuals contain most of the Holantarctic diversity for ancestrally indicative markers.

    Science.gov (United States)

    Karlin, Eric F; Smouse, Peter E

    2017-08-01

    Allopolyploids exhibit both different levels and different patterns of genetic variation than are typical of diploids. However, scant attention has been given to the partitioning of allelic information and diversity in allopolyploids, particularly that among homeologous monoploid components of the hologenome. Sphagnum × falcatulum is a double allopolyploid peat moss that spans a considerable portion of the Holantarctic. With monoploid genomes from three ancestral species, this organism exhibits a complex evolutionary history involving serial inter-subgeneric allopolyploidizations. Studying populations from three disjunct regions [South Island (New Zealand); Tierra de Fuego archipelago (Chile, Argentina); Tasmania (Australia)], allelic information for five highly stable microsatellite markers that differed among the three (ancestral) monoploid genomes was examined. Using Shannon information and diversity measures, the holoploid information, as well as the information within and among the three component monoploid genomes, was partitioned into separate components for individuals within and among populations and regions, and those information components were then converted into corresponding diversity measures. The majority (76 %) of alleles detected across these five markers are most likely to have been captured by hybridization, but the information within each of the three monoploid genomes varied, suggesting a history of recurrent allopolyploidization between ancestral species containing different levels of genetic diversity. Information within individuals, equivalent to the information among monoploid genomes (for this dataset), was relatively stable, and represented 83 % of the grand total information across the Holantarctic, with both inter-regional and inter-population diversification each accounting for about 5 % of the total information. Sphagnum × falcatulum probably inherited the great majority of its genetic diversity at these markers by reticulation

  20. Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme.

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    Maritrini Colón

    Full Text Available BACKGROUND: Gene duplication is a key evolutionary mechanism providing material for the generation of genes with new or modified functions. The fate of duplicated gene copies has been amply discussed and several models have been put forward to account for duplicate conservation. The specialization model considers that duplication of a bifunctional ancestral gene could result in the preservation of both copies through subfunctionalization, resulting in the distribution of the two ancestral functions between the gene duplicates. Here we investigate whether the presumed bifunctional character displayed by the single branched chain amino acid aminotransferase present in K. lactis has been distributed in the two paralogous genes present in S. cerevisiae, and whether this conservation has impacted S. cerevisiae metabolism. PRINCIPAL FINDINGS: Our results show that the KlBat1 orthologous BCAT is a bifunctional enzyme, which participates in the biosynthesis and catabolism of branched chain aminoacids (BCAAs. This dual role has been distributed in S. cerevisiae Bat1 and Bat2 paralogous proteins, supporting the specialization model posed to explain the evolution of gene duplications. BAT1 is highly expressed under biosynthetic conditions, while BAT2 expression is highest under catabolic conditions. Bat1 and Bat2 differential relocalization has favored their physiological function, since biosynthetic precursors are generated in the mitochondria (Bat1, while catabolic substrates are accumulated in the cytosol (Bat2. Under respiratory conditions, in the presence of ammonium and BCAAs the bat1Δ bat2Δ double mutant shows impaired growth, indicating that Bat1 and Bat2 could play redundant roles. In K. lactis wild type growth is independent of BCAA degradation, since a Klbat1Δ mutant grows under this condition. CONCLUSIONS: Our study shows that BAT1 and BAT2 differential expression and subcellular relocalization has resulted in the distribution of the

  1. Human Genetic Ancestral Composition Correlates with the Origin of Mycobacterium leprae Strains in a Leprosy Endemic Population.

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    Nora Cardona-Castro

    Full Text Available Recent reports have suggested that leprosy originated in Africa, extended to Asia and Europe, and arrived in the Americas during European colonization and the African slave trade. Due to colonization, the contemporary Colombian population is an admixture of Native-American, European and African ancestries. Because microorganisms are known to accompany humans during migrations, patterns of human migration can be traced by examining genomic changes in associated microbes. The current study analyzed 118 leprosy cases and 116 unrelated controls from two Colombian regions endemic for leprosy (Atlantic and Andean in order to determine possible associations of leprosy with patient ancestral background (determined using 36 ancestry informative markers, Mycobacterium leprae genotype and/or patient geographical origin. We found significant differences between ancestral genetic composition. European components were predominant in Andean populations. In contrast, African components were higher in the Atlantic region. M. leprae genotypes were then analyzed for cluster associations and compared with the ancestral composition of leprosy patients. Two M. leprae principal clusters were found: haplotypes C54 and T45. Haplotype C54 associated with African origin and was more frequent in patients from the Atlantic region with a high African component. In contrast, haplotype T45 associated with European origin and was more frequent in Andean patients with a higher European component. These results suggest that the human and M. leprae genomes have co-existed since the African and European origins of the disease, with leprosy ultimately arriving in Colombia during colonization. Distinct M. leprae strains followed European and African settlement in the country and can be detected in contemporary Colombian populations.

  2. High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat.

    Science.gov (United States)

    Yan, Honghai; Bekele, Wubishet A; Wight, Charlene P; Peng, Yuanying; Langdon, Tim; Latta, Robert G; Fu, Yong-Bi; Diederichsen, Axel; Howarth, Catherine J; Jellen, Eric N; Boyle, Brian; Wei, Yuming; Tinker, Nicholas A

    2016-11-01

    Genome analysis of 27 oat species identifies ancestral groups, delineates the D genome, and identifies ancestral origin of 21 mapped chromosomes in hexaploid oat. We investigated genomic relationships among 27 species of the genus Avena using high-density genetic markers revealed by genotyping-by-sequencing (GBS). Two methods of GBS analysis were used: one based on tag-level haplotypes that were previously mapped in cultivated hexaploid oat (A. sativa), and one intended to sample and enumerate tag-level haplotypes originating from all species under investigation. Qualitatively, both methods gave similar predictions regarding the clustering of species and shared ancestral genomes. Furthermore, results were consistent with previous phylogenies of the genus obtained with conventional approaches, supporting the robustness of whole genome GBS analysis. Evidence is presented to justify the final and definitive classification of the tetraploids A. insularis, A. maroccana (=A. magna), and A. murphyi as containing D-plus-C genomes, and not A-plus-C genomes, as is most often specified in past literature. Through electronic painting of the 21 chromosome representations in the hexaploid oat consensus map, we show how the relative frequency of matches between mapped hexaploid-derived haplotypes and AC (DC)-genome tetraploids vs. A- and C-genome diploids can accurately reveal the genome origin of all hexaploid chromosomes, including the approximate positions of inter-genome translocations. Evidence is provided that supports the continued classification of a diverged B genome in AB tetraploids, and it is confirmed that no extant A-genome diploids, including A. canariensis, are similar enough to the D genome of tetraploid and hexaploid oat to warrant consideration as a D-genome diploid.

  3. Saccharomyces cerevisiae Bat1 and Bat2 Aminotransferases Have Functionally Diverged from the Ancestral-Like Kluyveromyces lactis Orthologous Enzyme

    Science.gov (United States)

    Colón, Maritrini; Hernández, Fabiola; López, Karla; Quezada, Héctor; González, James; López, Geovani; Aranda, Cristina; González, Alicia

    2011-01-01

    Background Gene duplication is a key evolutionary mechanism providing material for the generation of genes with new or modified functions. The fate of duplicated gene copies has been amply discussed and several models have been put forward to account for duplicate conservation. The specialization model considers that duplication of a bifunctional ancestral gene could result in the preservation of both copies through subfunctionalization, resulting in the distribution of the two ancestral functions between the gene duplicates. Here we investigate whether the presumed bifunctional character displayed by the single branched chain amino acid aminotransferase present in K. lactis has been distributed in the two paralogous genes present in S. cerevisiae, and whether this conservation has impacted S. cerevisiae metabolism. Principal Findings Our results show that the KlBat1 orthologous BCAT is a bifunctional enzyme, which participates in the biosynthesis and catabolism of branched chain aminoacids (BCAAs). This dual role has been distributed in S. cerevisiae Bat1 and Bat2 paralogous proteins, supporting the specialization model posed to explain the evolution of gene duplications. BAT1 is highly expressed under biosynthetic conditions, while BAT2 expression is highest under catabolic conditions. Bat1 and Bat2 differential relocalization has favored their physiological function, since biosynthetic precursors are generated in the mitochondria (Bat1), while catabolic substrates are accumulated in the cytosol (Bat2). Under respiratory conditions, in the presence of ammonium and BCAAs the bat1Δ bat2Δ double mutant shows impaired growth, indicating that Bat1 and Bat2 could play redundant roles. In K. lactis wild type growth is independent of BCAA degradation, since a Klbat1Δ mutant grows under this condition. Conclusions Our study shows that BAT1 and BAT2 differential expression and subcellular relocalization has resulted in the distribution of the biosynthetic and catabolic

  4. Del discurso del desarrollo al buen vivir: una aproximación con enfoque étnico diferencial a la intervención megaminera en el Alto Putumayo

    OpenAIRE

    Pardo Quintero, Andrés Felipe

    2015-01-01

    Este estudio de caso aborda el tema de las alternativas al desarrollo convencional, concretamente el concepto de Buen Vivir- Sumak Kawsay, a la luz de la descripción y el análisis de los impactos del auge minero en la región del Alto Putumayo, territorio ancestral de los pueblos indígenas Inga y Camëntsá. Este trabajo quiere mostrar que la apuesta por un modelo económico extractivista, está inspirado en un plan de dominación global de recursos naturales por parte del algunas potencias, que a ...

  5. Ancestral polymorphism at the major histocompatibility complex (MHCIIß in the Nesospiza bunting species complex and its sister species (Rowettia goughensis

    Directory of Open Access Journals (Sweden)

    van Rensburg Alexandra

    2012-08-01

    Full Text Available Abstract Background The major histocompatibility complex (MHC is an important component of the vertebrate immune system and is frequently used to characterise adaptive variation in wild populations due to its co-evolution with pathogens. Passerine birds have an exceptionally diverse MHC with multiple gene copies and large numbers of alleles compared to other avian taxa. The Nesospiza bunting species complex (two species on Nightingale Island; one species with three sub-species on Inaccessible Island represents a rapid adaptive radiation at a small, isolated archipelago, and is thus an excellent model for the study of adaptation and speciation. In this first study of MHC in Nesospiza buntings, we aim to characterize MHCIIß variation, determine the strength of selection acting at this gene region and assess the level of shared polymorphism between the Nesospiza species complex and its putative sister taxon, Rowettia goughensis, from Gough Island. Results In total, 23 unique alleles were found in 14 Nesospiza and 2 R. goughensis individuals encoding at least four presumably functional loci and two pseudogenes. There was no evidence of ongoing selection on the peptide binding region (PBR. Of the 23 alleles, 15 were found on both the islands inhabited by Nesospiza species, and seven in both Nesospiza and Rowettia; indications of shared, ancestral polymorphism. A gene tree of Nesospiza MHCIIß alleles with several other passerine birds shows three highly supported Nesospiza-specific groups. All R. goughensis alleles were shared with Nesospiza, and these alleles were found in all three Nesospiza sequence groups in the gene tree, suggesting that most of the observed variation predates their phylogenetic split. Conclusions Lack of evidence of selection on the PBR, together with shared polymorphism across the gene tree, suggests that population variation of MHCIIß among Nesospiza and Rowettia is due to ancestral polymorphism rather than local selective

  6. Evidence for an Ancestral Association of Human Coronavirus 229E with Bats.

    Science.gov (United States)

    Corman, Victor Max; Baldwin, Heather J; Tateno, Adriana Fumie; Zerbinati, Rodrigo Melim; Annan, Augustina; Owusu, Michael; Nkrumah, Evans Ewald; Maganga, Gael Darren; Oppong, Samuel; Adu-Sarkodie, Yaw; Vallo, Peter; da Silva Filho, Luiz Vicente Ribeiro Ferreira; Leroy, Eric M; Thiel, Volker; van der Hoek, Lia; Poon, Leo L M; Tschapka, Marco; Drosten, Christian; Drexler, Jan Felix

    2015-12-01

    We previously showed that close relatives of human coronavirus 229E (HCoV-229E) exist in African bats. The small sample and limited genomic characterizations have prevented further analyses so far. Here, we tested 2,087 fecal specimens from 11 bat species sampled in Ghana for HCoV-229E-related viruses by reverse transcription-PCR (RT-PCR). Only hipposiderid bats tested positive. To compare the genetic diversity of bat viruses and HCoV-229E, we tested historical isolates and diagnostic specimens sampled globally over 10 years. Bat viruses were 5- and 6-fold more diversified than HCoV-229E in the RNA-dependent RNA polymerase (RdRp) and spike genes. In phylogenetic analyses, HCoV-229E strains were monophyletic and not intermixed with animal viruses. Bat viruses formed three large clades in close and more distant sister relationships. A recently described 229E-related alpaca virus occupied an intermediate phylogenetic position between bat and human viruses. According to taxonomic criteria, human, alpaca, and bat viruses form a single CoV species showing evidence for multiple recombination events. HCoV-229E and the alpaca virus showed a major deletion in the spike S1 region compared to all bat viruses. Analyses of four full genomes from 229E-related bat CoVs revealed an eighth open reading frame (ORF8) located at the genomic 3' end. ORF8 also existed in the 229E-related alpaca virus. Reanalysis of HCoV-229E sequences showed a conserved transcription regulatory sequence preceding remnants of this ORF, suggesting its loss after acquisition of a 229E-related CoV by humans. These data suggested an evolutionary origin of 229E-related CoVs in hipposiderid bats, hypothetically with camelids as intermediate hosts preceding the establishment of HCoV-229E. The ancestral origins of major human coronaviruses (HCoVs) likely involve bat hosts. Here, we provide conclusive genetic evidence for an evolutionary origin of the common cold virus HCoV-229E in hipposiderid bats by analyzing a

  7. The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification.

    Science.gov (United States)

    Desroches, M; Royer, G; Roche, D; Mercier-Darty, M; Vallenet, D; Médigue, C; Bastard, K; Rodriguez, C; Clermont, O; Denamur, E; Decousser, J-W

    2018-01-01

    More than a century ago, Theodor Escherich isolated the bacterium that was to become Escherichia coli , one of the most studied organisms. Not long after, the strain began an odyssey and landed in many laboratories across the world. As laboratory culture conditions could be responsible for major changes in bacterial strains, we conducted a genome analysis of isolates of this emblematic strain from different culture collections (England, France, the United States, Germany). Strikingly, many discrepancies between the isolates were observed, as revealed by multilocus sequence typing (MLST), the presence of virulence-associated genes, core genome MLST, and single nucleotide polymorphism/indel analyses. These differences are correlated with the phylogeographic history of the strain and were due to an unprecedented number of mutations in coding DNA repair functions such as mismatch repair (MutL) and oxidized guanine nucleotide pool cleaning (MutT), conferring a specific mutational spectrum and leading to a mutator phenotype. The mutator phenotype was probably acquired during subculturing and corresponded to second-order selection. Furthermore, all of the isolates exhibited hypersusceptibility to antibiotics due to mutations in efflux pump- and porin-encoding genes, as well as a specific mutation in the sigma factor-encoding gene rpoS . These defects reflect a self-preservation and nutritional competence tradeoff allowing survival under the starvation conditions imposed by storage. From a clinical point of view, dealing with such mutator strains can lead microbiologists to draw false conclusions about isolate relatedness and may impact therapeutic effectiveness. IMPORTANCE Mutator phenotypes have been described in laboratory-evolved bacteria, as well as in natural isolates. Several genes can be impacted, each of them being associated with a typical mutational spectrum. By studying one of the oldest strains available, the ancestral Escherich strain, we were able to

  8. Amplification of an ancestral mammalian L1 family of long interspersed repeated DNA occurred just before the murine radiation

    International Nuclear Information System (INIS)

    Pascale, E.; Valle, E.; Furano, A.V.

    1990-01-01

    Each mammalian genus examined so far contains 50,000-100,000 members of an L1 (LINE 1) family of long interspersed repeated DNA elements. Current knowledge on the evolution of L1 families presents a paradox because, although L1 families have been in mammalian genomes since before the mammalian radiation ∼80 million years ago, most members of the L1 families are only a few million years old. Accordingly it has been suggested either that the extensive amplification that characterizes present-day L1 families did not occur in the past or that old members were removed as new one were generated. However, the authors show here that an ancestral rodent L1 family was extensively amplified ∼10 million years ago and that the relics of this amplification have persisted in modern murine genomes. This amplification occurred just before the divergence of modern murine genera from their common ancestor and identifies the murine node in the lineage of modern muroid rodents The results suggest that repeated amplification of L1 elements is a feature of the evaluation of mammalian genomes and that ancestral amplification events could provide a useful tool for determining mammalian lineages

  9. Topologies of the conditional ancestral trees and full-likelihood-based inference in the general coalescent tree framework.

    Science.gov (United States)

    Sargsyan, Ori

    2010-08-01

    The general coalescent tree framework is a family of models for determining ancestries among random samples of DNA sequences at a nonrecombining locus. The ancestral models included in this framework can be derived under various evolutionary scenarios. Here, a computationally tractable full-likelihood-based inference method for neutral polymorphisms is presented, using the general coalescent tree framework and the infinite-sites model for mutations in DNA sequences. First, an exact sampling scheme is developed to determine the topologies of conditional ancestral trees. However, this scheme has some computational limitations and to overcome these limitations a second scheme based on importance sampling is provided. Next, these schemes are combined with Monte Carlo integrations to estimate the likelihood of full polymorphism data, the ages of mutations in the sample, and the time of the most recent common ancestor. In addition, this article shows how to apply this method for estimating the likelihood of neutral polymorphism data in a sample of DNA sequences completely linked to a mutant allele of interest. This method is illustrated using the data in a sample of DNA sequences at the APOE gene locus.

  10. Chromosome Painting in Callicebus nigrifrons Provides Insights into the Genome Evolution of Titi Monkeys and the Ancestral Callicebinae Karyotype.

    Science.gov (United States)

    Pereira Araújo, Naiara; Alves do Espírito Santo, Alice; do Socorro Pereira, Valéria; Stanyon, Roscoe; Svartman, Marta

    2017-01-01

    We studied the chromosomes of Callicebus nigrifrons with conventional and molecular cytogenetic methods. Our chromosome painting analysis in C. nigrifrons together with previous reports allowed us to hypothesize an ancestral Callicebinae karyotype with 2n = 48. The associations of human chromosomes (HSA) 2/22, 7/15, 10/11, and the inverted HSA2/16 would link Callicebus, Cheracebus, and Plecturocebus and would thus be present in the ancestral Callicebinae karyotype. Four fusions (HSA1b/1c, 3c/8b, 13/20, and 14/15/3/21) and 1 fission (HSA2/22) are synapomorphies of Callicebus. The associations HSA3/15 and HSA3/9 are chromosome features linking Callicebus and Cheracebus, whereas the association HSA13/17 would represent a link between Callicebus and the moloch group (Plecturocebus). Only 6 of the 33 recognized titi monkey species have now been painted with human chromosome-specific probes. Further analyses are needed to clarify the phylogenomic relationships in this species-rich group. © 2017 S. Karger AG, Basel.

  11. Cortisol mobilizes mineral stores from vertebral skeleton in the European eel: an ancestral origin for glucocorticoid-induced osteoporosis?

    Science.gov (United States)

    Sbaihi, Miskal; Rousseau, Karine; Baloche, Sylvie; Meunier, François; Fouchereau-Peron, Martine; Dufour, Sylvie

    2009-05-01

    Endogenous excess cortisol and glucocorticoid (GC) therapy are a major cause of secondary osteoporosis in humans. Intense bone resorption can also be observed in other vertebrates such as migratory teleost fish at the time of reproductive migration and during fasting when large amounts of calcium and phosphate are required. Using a primitive teleost, the European eel, as a model, we investigated whether cortisol could play an ancestral role in the induction of vertebral skeleton demineralization. Different histological and histomorphometric methods were performed on vertebral samples of control and cortisol-treated eels. We demonstrated that cortisol induced a significant bone demineralization of eel vertebrae, as shown by significant decreases of the mineral ratio measured by incineration, and the degree of mineralization measured by quantitative microradiography of vertebral sections. Histology and image analysis of ultrathin microradiographs showed the induction by cortisol of different mechanisms of bone resorption, including periosteocytic osteolysis and osteoclastic resorption. Specificity of cortisol action was investigated by comparison with the effects of sex steroids. Whereas, testosterone had no effect, estradiol induced vertebral skeleton demineralization, an effect related to the stimulated synthesis of vitellogenin (Vg), an oviparous specific phospho-calcio-lipoprotein. By contrast, the cortisol demineralization effect was not related to any stimulation of Vg. This study demonstrates GC-induced bone demineralization in an adult non-mammalian vertebrate, which undergoes natural bone resorption during its life cycle. Our data suggest that the stimulatory action of cortisol on bone loss may represent an ancestral and conserved endocrine regulation in vertebrates.

  12. A Toxoplasma gondii locus required for the direct manipulation of host mitochondria has maintained multiple ancestral functions.

    Science.gov (United States)

    Blank, Matthew L; Parker, Michelle L; Ramaswamy, Raghavendran; Powell, Cameron J; English, Elizabeth D; Adomako-Ankomah, Yaw; Pernas, Lena F; Workman, Sean D; Boothroyd, John C; Boulanger, Martin J; Boyle, Jon P

    2018-03-05

    The Toxoplasma gondii locus mitochondrial association factor 1 (MAF1) encodes multiple paralogs, some of which mediate host mitochondrial association (HMA). Previous work showed that HMA was a trait that arose in T. gondii through neofunctionalization of an ancestral MAF1 ortholog. Structural analysis of HMA-competent and incompetent MAF1 paralogs (MAF1b and MAF1a, respectively) revealed that both paralogs harbor an ADP ribose binding macro domain, with comparatively low (micromolar) affinity for ADP ribose. Replacing the 16 C-terminal residues of MAF1b with those of MAF1a abrogated HMA, and we also show that only three residues in the C-terminal helix are required for MAF1-mediated HMA. Importantly these same three residues are also required for the in vivo growth advantage conferred by MAF1b, providing a definitive link between in vivo proliferation and manipulation of host mitochondria. Co-immunoprecipitation assays reveal that the ability to interact with the mitochondrial MICOS complex is shared by HMA-competent and incompetent MAF1 paralogs and mutants. The weak ADPr coordination and ability to interact with the MICOS complex shared between divergent paralogs may represent modular ancestral functions for this tandemly expanded and diversified T. gondii locus. This article is protected by copyright. All rights reserved. © 2018 John Wiley & Sons Ltd.

  13. The ghost of Afrikaner identity in Ancestral voices, Leap year and The long silence of Mario Salviati (Etienne van Heerden

    Directory of Open Access Journals (Sweden)

    Mariëtte van Graan

    2017-04-01

    Full Text Available Ghost characters are a characteristic of the novels of Etienne van Heerden, but little research has been done concerning the nature and function of these ghost characters. In this article I discuss Van Heerden’s use of ghost characters diachronically with reference to the novels Ancestral voices (1986, Leap year (1993 and The long silence of Mario Salviati (2000. In order to clarify the nature of these ghosts, I use the so-called science of the paranormal as a framework. The ghosts in the three novels will be classified accordingly, and then discussed within the context of the novels in which they appear. In this way, I shall show how the ghost characters in these novels can be read as a constantly changing embodiment of Afrikaner identity (a central theme in Van Heerden’s oeuvre. Van Heerden’s Afrikaner changes with the times: in Ancestral voices the ghost characters form a collective that represents a fragmented image of the stereotypical, archaic male Afrikaner identity; in Leap year a liminal character is written in a liminal time to embody a liminal Afrikaner identity; and in The long silence of Mario Salviati Van Heerden moves away from the exclusive Afrikaner identity to a broader South African identity by using ghost characters from very different backgrounds and origins. In conclusion I shall compare these identities and the historical contexts of these novels in order to show the function of Van Heerden’s ghost characters as constant rewritings of South African identities.

  14. Anatomía foliar y del pecíolo de cuatro especies de Lupinus (Fabaceae Foliar and petiole anatomy of four species of Lupinus (Fabaceae

    Directory of Open Access Journals (Sweden)

    Juan Francisco Zamora-Natera

    2012-09-01

    Full Text Available Se describe y compara la anatomía foliar y del pecíolo de 4 especies del género Lupinus (L. aschenbornii S.Schauer, L. exaltatus Zucc., L. montanus Kunth y L. reflexus Rose que se distribuyen en un gradiente altitudinal en el Parque Nacional Nevado de Colima. Las hojas se fijaron en campo y se procesaron mediante la técnica de inclusión en parafina. Parte de las láminas se deshidrataron para caracterizar la superficie foliar por medio del microscopio electrónico de barrido. Las especies comparten la epidermis papilosa de paredes anticlinales con diferentes grados de ondulación, estomas anomocíticos, tricomas simples lineares y mesofilo bifacial. Los folíolos de L. montanus son glabros en la superficie abaxial, las estrías cuticulares sobre las células localizadas en la base de los tricomas es un rasgo característico de L. montanus y de L. reflexus. Las diferencias encontradas en espesor de la lámina y del mesofilo así como la abundancia de ceras epicuticulares pueden estar influenciadas por el ambiente. Distintivamente, el número y distribución de haces vasculares en los pecíolos difieren entre las 4 especies y podrían ser de utilidad para diferenciarlas si estos resultados se confirman al estudiar un mayor número de especies de Lupinus.The aims of this study were to describe and compare the foliar and petiole anatomy of 4 species of Lupinus (L. aschenbornii S.Schauer, L. exaltatus Zucc., L. montanus Kunth, and L. reflexus Rose distributed in an elevation gradient at Parque Nacional Nevado de Colima. Leaves were fixed in the field and prepared using the paraffin embedding technique. In addition, part of the blades was dehydrated to describe leaf surface through the scanning electron microscope. The 4 species shared a papillose epidermis with undulated anticlinal walls in different degrees, stomata anomocytic, simple unicellular trichomes, and bifacial mesophyll. Leaflets of L. montanus are glabrous on the abaxial surface

  15. Temazcal: instrumento de armonización. El ejemplo del grupo de temazcaleros de Celaya

    OpenAIRE

    González Mariscal, Jesús María

    2007-01-01

    Este trabajo de investigación pretende relatar el encuentro con el uso contemporáneo del temazcal, el baño de vapor mexicano. Mostrar la deriva que hemos realizado para poder entender la relevancia de esta tradición mexicana. Un recorrido que nos ha hecho cruzar diferentes territorios, pasando por los correspondientes estratos en los que se asienta esta ancestral práctica. De manera que primero hemos trazado una breve genealogía del temazcal de forma que podamos contextualiz...

  16. Racionalidad del terror

    Directory of Open Access Journals (Sweden)

    Sauquillo, Julián

    2012-06-01

    Full Text Available Contemporary terrorism is not an ancestral, irrational, oriental, phenomenon. Nor is it a fanatical reaction of the religions that vindicate a backward society as against the developed societies of the first world. The terrorism of today is a thoroughly modern phenomenon: one of the worst monstrosities of modern society, supplied with rational planning of objectives. A captious interpretation of the Islamic religion endows terrorism with a universal projection among the multitudinous audience of the discontented with the might of that diffuse power that we know as the developed Western world. Al Qaeda does not hesitate to present its war against the West as «a war without quarter» lasting until the infidel Christians are eliminated and the world is subjugated to Islam In the meantime, in a similar conflictive sense, the theoretical campaign of Samuel Huntington across the entire planet responds with a paradigmatic post-cold war, capable of inflaming the international conflict, in a sense no less belligerent with the Anti-Occident than that employed by the radical Imams. As has been pointed out by Amartya Sen, to give priority in this way to the religious identity, the response of the West to international terrorism in calling it «islamic terrorism» is very clumsy, as it magnifies the importance of the religious authorities in detriment to governmental ways and means in the solving of problems.

    El terrorismo contemporáneo no es un fenómeno ancestral, irracional y oriental. Tampoco es una reacción fanática de las religiones que reivindican una sociedad atrasada frente a las sociedades desarrolladas del primer mundo. El terrorismo actual es un fenómeno plenamente moderno: uno de los peores engendros de la sociedad moderna, dotado de una planificación racional de objetivos. Una interpretación capciosa de la religión islámica dota al terrorismo de una proyección universal entre la numerosa audiencia de descontentos con el poder

  17. Efectos del contacto piel con piel del recién nacido con su madre

    Directory of Open Access Journals (Sweden)

    Camila Lucchini Raies

    Full Text Available Antecedentes: el contacto piel con piel ha sido una práctica ancestral en toda cultura, que debido a la institucionalización de la atención del parto, disminuyó en occidente. Se retomó en el marco de la atención humanizada del parto. Objetivo principal: determinar los efectos del contacto piel con piel del recién nacido con su madre. Metodología: revisión bibliográfica de 26 estudios. Límites de búsqueda: new borns, humans, clinical trials, de 10 años de publicación, en bases de datos: Pubmed, ProQuest, CINHAL, Lilacs. Resultados principales: Se observaron beneficios en las variables: duración de lactancia materna, comportamiento neurosensorial, regulación de temperatura, como alternativa al cuidado estándar, disminución en días hospitalización y niveles de cortisol, favorecedor de la interacción madre-hijo y desarrollo infantil. Conclusión principal: el contacto piel con piel brinda múltiples beneficios a recién nacidos. Se presenta como alternativa de cuidado segura, factible de implementar.

  18. del alcoholismo

    Directory of Open Access Journals (Sweden)

    Rodrigo Arias Duque

    2005-01-01

    Full Text Available Desde el punto de vista farmacológico, es importante comprender qué es el alcohol y cómo actúa en el organismo. No existe una causa simple, sino una interacción complicada de factores neuroquímicos, fisiológicos, psicológicos y sociales que originan y desarrollan esta grave enfermedad fármaco-dependiente. La acción psicofisiológica y farmacodinámica del alcohol es fundamentalmente depresiva, por la reducción de la transmisión sináptica en el sistema nervioso humano. Es un hecho conocido que el consumo excesivo de alcohol causa una disfunción aguda y crónica del cerebro, produciendo trastornos en el sistema nervioso central, presentando alteraciones en la memoria y en las funciones intelectuales como cálculo, comprensión y aprendizaje. A nivel hepático tiene lugar, en su mayoría, el metabolismo del alcohol, produciéndose un hígado graso alcohólico, aumentando el tamaño, terminando en necrosis e inflamación grave del hígado; esto se llama hepatitis alcohólica, y si se sigue consumiendo alcohol se desarrollará la cirrosis. El alcohol también ha estado relacionado con alteraciones del miocardio; se ha constatado en animales de experimentación sanos que tanto la velocidad de contracción del músculo cardiaco y su máxima tensión disminuyen en presencia del alcohol, como consecuencia, la fuerza de cada contracción y el aumento de presión en el ventrículo izquierdo son menores, perdiendo eficacia el corazón como bomba.

  19. The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera.

    Science.gov (United States)

    Cao, Yong-Qiang; Ma, Chuan; Chen, Ji-Yue; Yang, Da-Rong

    2012-06-22

    Lepidoptera encompasses more than 160,000 described species that have been classified into 45-48 superfamilies. The previously determined Lepidoptera mitochondrial genomes (mitogenomes) are limited to six superfamilies of the lineage Ditrysia. Compared with the ancestral insect gene order, these mitogenomes all contain a tRNA rearrangement. To gain new insights into Lepidoptera mitogenome evolution, we sequenced the mitogenomes of two ghost moths that belong to the non-ditrysian lineage Hepialoidea and conducted a comparative mitogenomic analysis across Lepidoptera. The mitogenomes of Thitarodes renzhiensis and T. yunnanensis are 16,173 bp and 15,816 bp long with an A + T content of 81.28 % and 82.34 %, respectively. Both mitogenomes include 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and the A + T-rich region. Different tandem repeats in the A + T-rich region mainly account for the size difference between the two mitogenomes. All the protein-coding genes start with typical mitochondrial initiation codons, except for cox1 (CGA) and nad1 (TTG) in both mitogenomes. The anticodon of trnS(AGN) in T. renzhiensis and T. yunnanensis is UCU instead of the mostly used GCU in other sequenced Lepidoptera mitogenomes. The 1,584-bp sequence from rrnS to nad2 was also determined for an unspecified ghost moth (Thitarodes sp.), which has no repetitive sequence in the A + T-rich region. All three Thitarodes species possess the ancestral gene order with trnI-trnQ-trnM located between the A + T-rich region and nad2, which is different from the gene order trnM-trnI-trnQ in all previously sequenced Lepidoptera species. The formerly identified conserved elements of Lepidoptera mitogenomes (i.e. the motif 'ATAGA' and poly-T stretch in the A + T-rich region and the long intergenic spacer upstream of nad2) are absent in the Thitarodes mitogenomes. The mitogenomes of T. renzhiensis and T. yunnanensis exhibit unusual features compared with the previously determined

  20. MADS goes genomic in conifers: towards determining the ancestral set of MADS-box genes in seed plants.

    Science.gov (United States)

    Gramzow, Lydia; Weilandt, Lisa; Theißen, Günter

    2014-11-01

    MADS-box genes comprise a gene family coding for transcription factors. This gene family expanded greatly during land plant evolution such that the number of MADS-box genes ranges from one or two in green algae to around 100 in angiosperms. Given the crucial functions of MADS-box genes for nearly all aspects of plant development, the expansion of this gene family probably contributed to the increasing complexity of plants. However, the expansion of MADS-box genes during one important step of land plant evolution, namely the origin of seed plants, remains poorly understood due to the previous lack of whole-genome data for gymnosperms. The newly available genome sequences of Picea abies, Picea glauca and Pinus taeda were used to identify the complete set of MADS-box genes in these conifers. In addition, MADS-box genes were identified in the growing number of transcriptomes available for gymnosperms. With these datasets, phylogenies were constructed to determine the ancestral set of MADS-box genes of seed plants and to infer the ancestral functions of these genes. Type I MADS-box genes are under-represented in gymnosperms and only a minimum of two Type I MADS-box genes have been present in the most recent common ancestor (MRCA) of seed plants. In contrast, a large number of Type II MADS-box genes were found in gymnosperms. The MRCA of extant seed plants probably possessed at least 11-14 Type II MADS-box genes. In gymnosperms two duplications of Type II MADS-box genes were found, such that the MRCA of extant gymnosperms had at least 14-16 Type II MADS-box genes. The implied ancestral set of MADS-box genes for seed plants shows simplicity for Type I MADS-box genes and remarkable complexity for Type II MADS-box genes in terms of phylogeny and putative functions. The analysis of transcriptome data reveals that gymnosperm MADS-box genes are expressed in a great variety of tissues, indicating diverse roles of MADS-box genes for the development of gymnosperms. This study is

  1. Mating animals by minimising the covariance between ancestral contributions generates less inbreeding without compromising genetic gain in breeding schemes with truncation selection

    DEFF Research Database (Denmark)

    Henryon, M; Berg, P; Sørensen, A C

    2009-01-01

    We reasoned that mating animals by minimising the covariance between ancestral contributions (MCAC mating) will generate less inbreeding and at least as much genetic gain as minimum-coancestry mating in breeding schemes where the animals are truncation-selected. We tested this hypothesis by stoch......We reasoned that mating animals by minimising the covariance between ancestral contributions (MCAC mating) will generate less inbreeding and at least as much genetic gain as minimum-coancestry mating in breeding schemes where the animals are truncation-selected. We tested this hypothesis...

  2. EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution

    Directory of Open Access Journals (Sweden)

    Liran Carmel

    2010-01-01

    Full Text Available Evolutionary binary characters are features of species or genes, indicating the absence (value zero or presence (value one of some property. Examples include eukaryotic gene architecture (the presence or absence of an intron in a particular locus, gene content, and morphological characters. In many studies, the acquisition of such binary characters is assumed to represent a rare evolutionary event, and consequently, their evolution is analyzed using various flavors of parsimony. However, when gain and loss of the character are not rare enough, a probabilistic analysis becomes essential. Here, we present a comprehensive probabilistic model to describe the evolution of binary characters on a bifurcating phylogenetic tree. A fast software tool, EREM, is provided, using maximum likelihood to estimate the parameters of the model and to reconstruct ancestral states (presence and absence in internal nodes and events (gain and loss events along branches.

  3. EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution.

    Science.gov (United States)

    Carmel, Liran; Wolf, Yuri I; Rogozin, Igor B; Koonin, Eugene V

    2010-01-01

    Evolutionary binary characters are features of species or genes, indicating the absence (value zero) or presence (value one) of some property. Examples include eukaryotic gene architecture (the presence or absence of an intron in a particular locus), gene content, and morphological characters. In many studies, the acquisition of such binary characters is assumed to represent a rare evolutionary event, and consequently, their evolution is analyzed using various flavors of parsimony. However, when gain and loss of the character are not rare enough, a probabilistic analysis becomes essential. Here, we present a comprehensive probabilistic model to describe the evolution of binary characters on a bifurcating phylogenetic tree. A fast software tool, EREM, is provided, using maximum likelihood to estimate the parameters of the model and to reconstruct ancestral states (presence and absence in internal nodes) and events (gain and loss events along branches).

  4. Ancestral mutations as a tool for solubilizing proteins: The case of a hydrophobic phosphate-binding protein

    Directory of Open Access Journals (Sweden)

    Daniel Gonzalez

    2014-01-01

    Full Text Available Stable and soluble proteins are ideal candidates for functional and structural studies. Unfortunately, some proteins or enzymes can be difficult to isolate, being sometimes poorly expressed in heterologous systems, insoluble and/or unstable. Numerous methods have been developed to address these issues, from the screening of various expression systems to the modification of the target protein itself. Here we use a hydrophobic, aggregation-prone, phosphate-binding protein (HPBP as a case study. We describe a simple and fast method that selectively uses ancestral mutations to generate a soluble, stable and functional variant of the target protein, here named sHPBP. This variant is highly expressed in Escherichia coli, is easily purified and its structure was solved at much higher resolution than its wild-type progenitor (1.3 versus 1.9 Å, respectively.

  5. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories.

    Directory of Open Access Journals (Sweden)

    Victor Hanson-Smith

    2016-07-01

    Full Text Available The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1 reconstruct and "resurrect" (that is, synthesize in vivo or in vitro extinct proteins to study how they differ from modern proteins, (2 identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3 order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above, or use our open-source code to launch their own PhyloBot server.

  6. Cis-by-Trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene.

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    Shamoni Maheshwari

    Full Text Available The Dobzhansky and Muller (D-M model explains the evolution of hybrid incompatibility (HI through the interaction between lineage-specific derived alleles at two or more loci. In agreement with the expectation that HI results from functional divergence, many protein-coding genes that contribute to incompatibilities between species show signatures of adaptive evolution, including Lhr, which encodes a heterochromatin protein whose amino acid sequence has diverged extensively between Drosophila melanogaster and D. simulans by natural selection. The lethality of D. melanogaster/D. simulans F1 hybrid sons is rescued by removing D. simulans Lhr, but not D. melanogaster Lhr, suggesting that the lethal effect results from adaptive evolution in the D. simulans lineage. It has been proposed that adaptive protein divergence in Lhr reflects antagonistic coevolution with species-specific heterochromatin sequences and that defects in LHR protein localization cause hybrid lethality. Here we present surprising results that are inconsistent with this coding-sequence-based model. Using Lhr transgenes expressed under native conditions, we find no evidence that LHR localization differs between D. melanogaster and D. simulans, nor do we find evidence that it mislocalizes in their interspecific hybrids. Rather, we demonstrate that Lhr orthologs are differentially expressed in the hybrid background, with the levels of D. simulans Lhr double that of D. melanogaster Lhr. We further show that this asymmetric expression is caused by cis-by-trans regulatory divergence of Lhr. Therefore, the non-equivalent hybrid lethal effects of Lhr orthologs can be explained by asymmetric expression of a molecular function that is shared by both orthologs and thus was presumably inherited from the ancestral allele of Lhr. We present a model whereby hybrid lethality occurs by the interaction between evolutionarily ancestral and derived alleles.

  7. ¿Con o sin ancestros? Vigencia de lo ancestral en la Amazonía peruana

    Directory of Open Access Journals (Sweden)

    Thomas Mouriès

    2014-07-01

    Full Text Available The existence —or not— of the concept of ancestors in the indigenous Amazon has been the subject of much debate. However, regional leaders do not hesitate to call upon ‘ancestral’ knowledge, customs, or territories in the sense that, from an academic point of view, could appear enigmatic. «Ancestral, but… with or without ancestors?» is the question a confused anthropologist might ask. In this article, I propose to offer elements of a response to this question,based on a case study in Peru. First I analyze how Amazonian indigenous leaders, following international law, have adopted the legal notion of ‘ancestral possession’ of their territory to adapt it to the political sphere. This approach accounts for the recent generalization and uniformization of the term ‘ancestral’, but poses the problem of how it articulates with the indigenous cosmologies that it supposes to reflect. For this reason, I explore in the second section the pertinence of the category of ‘ancestor’ in the indigenous Amazon, briefly drawing upon the academic debate in order to define inwhat way this category takes on meaning. Based on testimony from an experienced Awajún leader, we thus return in the third section more explicitly to the different meanings and planes of reference that unfold when one uses the term ‘ancestral’, showing how Amazonian indigenous people not only adopt external conceptual elements and arguments, but also transform them based on their own cosmological singularities and political perspectives.

  8. Spodoptera frugiperda X-tox protein, an immune related defensin rosary, has lost the function of ancestral defensins.

    Directory of Open Access Journals (Sweden)

    Delphine Destoumieux-Garzón

    Full Text Available BACKGROUND: X-tox proteins are a family of immune-related proteins only found in Lepidoptera and characterized by imperfectly conserved tandem repeats of several defensin-like motifs. Previous phylogenetic analysis of X-tox genes supported the hypothesis that X-tox have evolved from defensins in a lineage-specific gene evolution restricted to Lepidoptera. In this paper, we performed a protein study in which we asked whether X-tox proteins have conserved the antimicrobial functions of their ancestral defensins and have evolved as defensin reservoirs. METHODOLOGY/PRINCIPAL FINDINGS: We followed the outcome of Spod-11-tox, an X-tox protein characterized in Spodoptera frugiperda, in bacteria-challenged larvae using both immunochemistry and antimicrobial assays. Three hours post infection, the Spod-11-tox protein was expressed in 80% of the two main classes of circulating hemocytes (granulocytes and plasmatocytes. Located in secretory granules of hemocytes, Spod-11-tox was never observed in contact with microorganisms entrapped within phagolyzosomes showing that Spod-11-tox is not involved in intracellular pathogen killing. In fact, the Spod-11-tox protein was found to be secreted into the hemolymph of experimentally challenged larvae. In order to determine antimicrobial properties of the Spod-11-tox protein, it was consequently fractionated according to a protocol frequently used for antimicrobial peptide purification. Over the course of purification, the anti-Spod-11-tox immunoreactivity was found to be dissociated from the antimicrobial activity. This indicates that Spod-11-tox is not processed into bioactive defensins in response to a microbial challenge. CONCLUSIONS/SIGNIFICANCE: Altogether, our results show that X-tox proteins have not evolved as defensin reservoirs and have lost the antimicrobial properties of the ancestral insect defensins. The lepidopteran X-tox protein family will provide a valuable and tractable model to improve our

  9. Spodoptera frugiperda X-tox protein, an immune related defensin rosary, has lost the function of ancestral defensins.

    Science.gov (United States)

    Destoumieux-Garzón, Delphine; Brehelin, Michel; Bulet, Philippe; Boublik, Yvan; Girard, Pierre-Alain; Baghdiguian, Stephen; Zumbihl, Robert; Escoubas, Jean-Michel

    2009-08-27

    X-tox proteins are a family of immune-related proteins only found in Lepidoptera and characterized by imperfectly conserved tandem repeats of several defensin-like motifs. Previous phylogenetic analysis of X-tox genes supported the hypothesis that X-tox have evolved from defensins in a lineage-specific gene evolution restricted to Lepidoptera. In this paper, we performed a protein study in which we asked whether X-tox proteins have conserved the antimicrobial functions of their ancestral defensins and have evolved as defensin reservoirs. We followed the outcome of Spod-11-tox, an X-tox protein characterized in Spodoptera frugiperda, in bacteria-challenged larvae using both immunochemistry and antimicrobial assays. Three hours post infection, the Spod-11-tox protein was expressed in 80% of the two main classes of circulating hemocytes (granulocytes and plasmatocytes). Located in secretory granules of hemocytes, Spod-11-tox was never observed in contact with microorganisms entrapped within phagolyzosomes showing that Spod-11-tox is not involved in intracellular pathogen killing. In fact, the Spod-11-tox protein was found to be secreted into the hemolymph of experimentally challenged larvae. In order to determine antimicrobial properties of the Spod-11-tox protein, it was consequently fractionated according to a protocol frequently used for antimicrobial peptide purification. Over the course of purification, the anti-Spod-11-tox immunoreactivity was found to be dissociated from the antimicrobial activity. This indicates that Spod-11-tox is not processed into bioactive defensins in response to a microbial challenge. Altogether, our results show that X-tox proteins have not evolved as defensin reservoirs and have lost the antimicrobial properties of the ancestral insect defensins. The lepidopteran X-tox protein family will provide a valuable and tractable model to improve our knowledge on the molecular evolution of defensins, a class of innate immune effectors largely

  10. Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens.

    Science.gov (United States)

    Merda, Déborah; Briand, Martial; Bosis, Eran; Rousseau, Céline; Portier, Perrine; Barret, Matthieu; Jacques, Marie-Agnès; Fischer-Le Saux, Marion

    2017-11-01

    Deciphering the evolutionary history and transmission patterns of virulence determinants is necessary to understand the emergence of novel pathogens. The main virulence determinant of most pathogenic proteobacteria is the type three secretion system (T3SS). The Xanthomonas genus includes bacteria responsible for numerous epidemics in agroecosystems worldwide and represents a major threat to plant health. The main virulence factor of Xanthomonas is the Hrp2 family T3SS; however, this system is not conserved in all strains and it has not been previously determined whether the distribution of T3SS in this bacterial genus has resulted from losses or independent acquisitions. Based on comparative genomics of 82 genome sequences representing the diversity of the genus, we have inferred three ancestral acquisitions of the Hrp2 cluster during Xanthomonas evolution followed by subsequent losses in some commensal strains and re-acquisition in some species. While mutation was the main force driving polymorphism at the gene level, interspecies homologous recombination of large fragments expanding through several genes shaped Hrp2 cluster polymorphism. Horizontal gene transfer of the entire Hrp2 cluster also occurred. A reduced core effectome composed of xopF1, xopM, avrBs2 and xopR was identified that may allow commensal strains overcoming plant basal immunity. In contrast, stepwise accumulation of numerous type 3 effector genes was shown in successful pathogens responsible for epidemics. Our data suggest that capacity to intimately interact with plants through T3SS would be an ancestral trait of xanthomonads. Since its acquisition, T3SS has experienced a highly dynamic evolutionary history characterized by intense gene flux between species that may reflect its role in host adaptation. © 2017 John Wiley & Sons Ltd.

  11. Centromere Destiny in Dicentric Chromosomes: New Insights from the Evolution of Human Chromosome 2 Ancestral Centromeric Region.

    Science.gov (United States)

    Chiatante, Giorgia; Giannuzzi, Giuliana; Calabrese, Francesco Maria; Eichler, Evan E; Ventura, Mario

    2017-07-01

    Dicentric chromosomes are products of genomic rearrangements that place two centromeres on the same chromosome. Due to the presence of two primary constrictions, they are inherently unstable and overcome their instability by epigenetically inactivating and/or deleting one of the two centromeres, thus resulting in functionally monocentric chromosomes that segregate normally during cell division. Our understanding to date of dicentric chromosome formation, behavior and fate has been largely inferred from observational studies in plants and humans as well as artificially produced de novo dicentrics in yeast and in human cells. We investigate the most recent product of a chromosome fusion event fixed in the human lineage, human chromosome 2, whose stability was acquired by the suppression of one centromere, resulting in a unique difference in chromosome number between humans (46 chromosomes) and our most closely related ape relatives (48 chromosomes). Using molecular cytogenetics, sequencing, and comparative sequence data, we deeply characterize the relicts of the chromosome 2q ancestral centromere and its flanking regions, gaining insight into the ancestral organization that can be easily broadened to all acrocentric chromosome centromeres. Moreover, our analyses offered the opportunity to trace the evolutionary history of rDNA and satellite III sequences among great apes, thus suggesting a new hypothesis for the preferential inactivation of some human centromeres, including IIq. Our results suggest two possible centromere inactivation models to explain the evolutionarily stabilization of human chromosome 2 over the last 5-6 million years. Our results strongly favor centromere excision through a one-step process. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  12. Stem cell-specific activation of an ancestral myc protooncogene with conserved basic functions in the early metazoan Hydra.

    Science.gov (United States)

    Hartl, Markus; Mitterstiller, Anna-Maria; Valovka, Taras; Breuker, Kathrin; Hobmayer, Bert; Bister, Klaus

    2010-03-02

    The c-myc protooncogene encodes a transcription factor (Myc) with oncogenic potential. Myc and its dimerization partner Max are bHLH-Zip DNA binding proteins controlling fundamental cellular processes. Deregulation of c-myc leads to tumorigenesis and is a hallmark of many human cancers. We have identified and extensively characterized ancestral forms of myc and max genes from the early diploblastic cnidarian Hydra, the most primitive metazoan organism employed so far for the structural, functional, and evolutionary analysis of these genes. Hydra myc is specifically activated in all stem cells and nematoblast nests which represent the rapidly proliferating cell types of the interstitial stem cell system and in proliferating gland cells. In terminally differentiated nerve cells, nematocytes, or epithelial cells, myc expression is not detectable by in situ hybridization. Hydra max exhibits a similar expression pattern in interstitial cell clusters. The ancestral Hydra Myc and Max proteins display the principal design of their vertebrate derivatives, with the highest degree of sequence identities confined to the bHLH-Zip domains. Furthermore, the 314-amino acid Hydra Myc protein contains basic forms of the essential Myc boxes I through III. A recombinant Hydra Myc/Max complex binds to the consensus DNA sequence CACGTG with high affinity. Hybrid proteins composed of segments from the retroviral v-Myc oncoprotein and the Hydra Myc protein display oncogenic potential in cell transformation assays. Our results suggest that the principal functions of the Myc master regulator arose very early in metazoan evolution, allowing their dissection in a simple model organism showing regenerative ability but no senescence.

  13. PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories.

    Science.gov (United States)

    Hanson-Smith, Victor; Johnson, Alexander

    2016-07-01

    The method of phylogenetic ancestral sequence reconstruction is a powerful approach for studying evolutionary relationships among protein sequence, structure, and function. In particular, this approach allows investigators to (1) reconstruct and "resurrect" (that is, synthesize in vivo or in vitro) extinct proteins to study how they differ from modern proteins, (2) identify key amino acid changes that, over evolutionary timescales, have altered the function of the protein, and (3) order historical events in the evolution of protein function. Widespread use of this approach has been slow among molecular biologists, in part because the methods require significant computational expertise. Here we present PhyloBot, a web-based software tool that makes ancestral sequence reconstruction easy. Designed for non-experts, it integrates all the necessary software into a single user interface. Additionally, PhyloBot provides interactive tools to explore evolutionary trajectories between ancestors, enabling the rapid generation of hypotheses that can be tested using genetic or biochemical approaches. Early versions of this software were used in previous studies to discover genetic mechanisms underlying the functions of diverse protein families, including V-ATPase ion pumps, DNA-binding transcription regulators, and serine/threonine protein kinases. PhyloBot runs in a web browser, and is available at the following URL: http://www.phylobot.com. The software is implemented in Python using the Django web framework, and runs on elastic cloud computing resources from Amazon Web Services. Users can create and submit jobs on our free server (at the URL listed above), or use our open-source code to launch their own PhyloBot server.

  14. Culturas del Mundo

    DEFF Research Database (Denmark)

    Benwell, Ann Fenger; Costa, Alberto; Waehle, Espen

    2006-01-01

    ’Culturas del mundo. Colecciones del Museo Nacional de Dinamarca’ with Ann Fenger Benwell in Culturas del Mundo. Colecciones del Museo Nacional de Dinamarca, ed. Silvia Sauquet, Fundación "la Caixa", Barcelona 2006, pp. 31-39......’Culturas del mundo. Colecciones del Museo Nacional de Dinamarca’ with Ann Fenger Benwell in Culturas del Mundo. Colecciones del Museo Nacional de Dinamarca, ed. Silvia Sauquet, Fundación "la Caixa", Barcelona 2006, pp. 31-39...

  15. Systematics and morphological evolution within the moss family Bryaceae: a comparison between parsimony and Bayesian methods for reconstruction of ancestral character states.

    Science.gov (United States)

    Pedersen, Niklas; Holyoak, David T; Newton, Angela E

    2007-06-01

    The Bryaceae are a large cosmopolitan moss family including genera of significant morphological and taxonomic complexity. Phylogenetic relationships within the Bryaceae were reconstructed based on DNA sequence data from all three genomic compartments. In addition, maximum parsimony and Bayesian inference were employed to reconstruct ancestral character states of 38 morphological plus four habitat characters and eight insertion/deletion events. The recovered phylogenetic patterns are generally in accord with previous phylogenies based on chloroplast DNA sequence data and three major clades are identified. The first clade comprises Bryum bornholmense, B. rubens, B. caespiticium, and Plagiobryum. This corroborates the hypothesis suggested by previous studies that several Bryum species are more closely related to Plagiobryum than to the core Bryum species. The second clade includes Acidodontium, Anomobryum, and Haplodontium, while the third clade contains the core Bryum species plus Imbribryum. Within the latter clade, B. subapiculatum and B. tenuisetum form the sister clade to Imbribryum. Reconstructions of ancestral character states under maximum parsimony and Bayesian inference suggest fourteen morphological synapomorphies for the ingroup and synapomorphies are detected for most clades within the ingroup. Maximum parsimony and Bayesian reconstructions of ancestral character states are mostly congruent although Bayesian inference shows that the posterior probability of ancestral character states may decrease dramatically when node support is taken into account. Bayesian inference also indicates that reconstructions may be ambiguous at internal nodes for highly polymorphic characters.

  16. Glacier changes since Local Last Glacial Maximum in the South-West slope of Nevado Hualcán, Cordillera Blanca, Peru, deduced from moraine mapping and GIS-based analysis

    Science.gov (United States)

    Giráldez, Claudia; Palacios, David; Haeberli, Wilfried; Úbeda, Jose; Schauwecker, Simone; Torres, Judith

    2014-05-01

    Anticipating and assessing hazards and risks associated with the shrinking of surface and subsurface ice in cold mountain chains is facilitated by empirical-quantitative data on present and past rates of change, as well as by a general understanding of related landforms and landscape evolution through time. Rock/ice avalanches and devastating outburst floods from glacial lakes indeed constitute a major cause of severe damage in populated mountain areas such as the Cordillera Blanca whose combination of tectonic, topographic and glaciological characteristics make it a threatened region. This study focuses on the Río Chucchún catchment above the city of Carhuaz, which was recently affected by a flood/debris flow from a rock/ice avalanche impacting a recently grown lake (Laguna 513). Traces left by past glaciations strongly affect the current geomorphodinamic behaviour of the catchment. For instance, a prominent sediment-filled glacial overdeepening behind Younger Dryas (YD) moraines (Pampa de Shonquil) with its retention function strongly influenced the chain of processes initiated by the outburst of Laguna 513. The aim of this study is to reconstruct earlier glacial phases in the SW slope of Nevado Hualcán (Río Chucchún catchment), in order to compile quantitative information on surface areas and Equilibrium Line Altitudes (ELAs). To do so, glacier stages were assigned to five different glacial phases, through photointerpretation and moraine cartography: 2003; 1962; Hualcán-I-LIA (15th to 18th centuries); Hualcán-II-YD (~12,5 ka BP); and Hualcán-III-LLGM (~34 to 21 ka BP). Glacial stages Hualcán-I-LIA, Hualcán-II-YD and Hualcán-III-LLGM present relative dating based on previous studies from different authors in the Peruvian Andes. Once glaciers were delimited, their surface areas and Equilibrium Line Altitudes (ELAs) were calculated. For ELA estimation three different methods were used: the mid-range elevation, the Accumulation Area Ratio (AAR), and the

  17. Casos históricos colombianos del registro de anomalías del radón-222 antes de eventos sísmicos de naturaleza tectónica

    Directory of Open Access Journals (Sweden)

    Serna Valencia Doris Yaneth

    2003-08-01

    Full Text Available

    Since 1995 it had been making continuous measurements of the radioactive isotope Radon-222 emissions in soils at Galeras and Nevado del Ruiz volcanoes; and on active geological faults in Nariño, Cauca and Caldas districts. The E-PERM ionizing chamber system has been used in the Radon-222 monitoring, trapping this gas in the B horizont of soils. In zones of active faulting it has been stablished Radon soil emissions between 1000 and 2500 pCi/L. In some crossings of active faults it has been measured levels of25000 pCilL.

    In the present work appears a compilation of examples of the registered anomalous emissions in several stations before earthquakes of tectonic character. Examples of registered Radon anomalies before: I events of magnitudes between 2 and 4; 2 the Quindío earthquake of january 1999; and 3 the occurrence of seismic swarms registered by the seismological networks of the Volcanological and Seismological Observatories at Pasto and Manizales, are described.

    Desde el año de 1995 se han estado realizando mediciones continuas de las emisiones del isótopo radiactivo Radón-222 en los suelos de los volcanes Galeras y nevado del Ruiz, y sobre fallas activas en los departamentos de Nariño, Cauca y Caldas. En el monitoreo del gas Radón-222 se ha utilizado el sistema de medición de cámaras ionizantes E-PERM, atrapando los gases en el horizonte B de los suelos.

  18. Testing the reliability of software tools in sex and ancestry estimation in a multi-ancestral Brazilian sample.

    Science.gov (United States)

    Urbanová, Petra; Ross, Ann H; Jurda, Mikoláš; Nogueira, Maria-Ines

    2014-09-01

    In the framework of forensic anthropology osteometric techniques are generally preferred over visual examinations due to a higher level of reproducibility and repeatability; qualities that are crucial within a legal context. The use of osteometric methods has been further reinforced by incorporating statistically-based algorithms and large reference samples in a variety of user-friendly software applications. However, the continued increase in admixture of human populations have made the use of osteometric methods for estimation of ancestry much more complex, which confounds one of major requirements of ancestry assessment - intra-population homogeneity. The present paper tests the accuracy of ancestry and sex assessment using four identification software tools, specifically FORDISC 2.0, FORDISC 3.1.293, COLIPR 1.5.2 and 3D-ID 1.0. Software accuracy was tested in a sample of 174 documented human crania of Brazilian origin composed of different ancestral groups (i.e., European Brazilians, Afro-Brazilians, and Japanese Brazilians and of admixed ancestry). The results show that regardless of the software algorithm employed and composition of the reference database, all methods were able to allocate approximately 50% of Brazilian specimens to an appropriate major reference group. Of the three ancestral groups, Afro-Brazilians were especially prone to misclassification. Japanese Brazilians, by contrast, were shown to be relatively easily recognizable as being of Asian descent but at the same time showed a strong affinity towards Hispanic crania, in particularly when the classification based on FDB was carried out in FORDISC. For crania of admixed origin all of the algorithms showed a considerable higher rate of inconsistency with a tendency for misclassification into Asian and American Hispanic groups. Sex assessments revealed an overall modest to poor reliability (60-71% of correctly classified specimens) using the tested software programs with unbalanced individual

  19. Natural environments, ancestral diets, and microbial ecology: is there a modern "paleo-deficit disorder"? Part II.

    Science.gov (United States)

    Logan, Alan C; Katzman, Martin A; Balanzá-Martínez, Vicent

    2015-03-10

    Famed microbiologist René J. Dubos (1901-1982) was an early pioneer in the developmental origins of health and disease (DOHaD) construct. In the 1960s, he conducted groundbreaking research concerning the ways in which early-life experience with nutrition, microbiota, stress, and other environmental variables could influence later-life health outcomes. He recognized the co-evolutionary relationship between microbiota and the human host. Almost 2 decades before the hygiene hypothesis, he suggested that children in developed nations were becoming too sanitized (vs. our ancestral past) and that scientists should determine whether the childhood environment should be "dirtied up in a controlled manner." He also argued that oft-celebrated growth chart increases via changes in the global food supply and dietary patterns should not be equated to quality of life and mental health. Here in the second part of our review, we reflect the words of Dubos off contemporary research findings in the areas of diet, the gut-brain-axis (microbiota and anxiety and depression) and microbial ecology. Finally, we argue, as Dubos did 40 years ago, that researchers should more closely examine the relevancy of silo-sequestered, reductionist findings in the larger picture of human quality of life. In the context of global climate change and the epidemiological transition, an allergy epidemic and psychosocial stress, our review suggests that discussions of natural environments, urbanization, biodiversity, microbiota, nutrition, and mental health, are often one in the same.

  20. Research on Non-Destructive Testing Technology in Conservation Repair Project of Ancestral Temple in Mukden Palace

    Science.gov (United States)

    Yang, J.; Fu, M.

    2017-08-01

    Due to the use of wood and other non-permanent materials, traditional Chinese architecture is one of the most fragile constructions in various heritage objects today. With the increasing emphasis on the protection of cultural relics, the repair project of wooden structure has become more and more important. There are various kinds of destructions, which pose a hidden danger to the overall safety of the ancient buildings, caused not only by time and nature, but also by improper repairs in history or nowadays. Today, the use of digital technology is a basic requirement in the conservation of cultural heritage. Detection technology, especially non-destructive testing technology, could provide more accurate records in capturing detailed physical characteristics of structures such as geometric deformation and invisible damage, as well as prevent a man-made destruction in the process of repair project. This paper aims to interpret with a typical example, Ancestral Temple in Mukden Palace, along with a discussion of how to use the non-destructive testing technology with ground penetrating radar, stress wave, resistograph and so on, in addition to find an appropriate protection method in repair project of traditional Chinese wooden architecture.

  1. Testing the museum versus cradle tropical biological diversity hypothesis: phylogeny, diversification, and ancestral biogeographic range evolution of the ants.

    Science.gov (United States)

    Moreau, Corrie S; Bell, Charles D

    2013-08-01

    Ants are one of the most ecologically and numerically dominant group of terrestrial organisms with most species diversity currently found in tropical climates. Several explanations for the disparity of biological diversity in the tropics compared to temperate regions have been proposed including that the tropics may act as a "museum" where older lineages persist through evolutionary time or as a "cradle" where new species continue to be generated. We infer the molecular phylogenetic relationships of 295 ant specimens including members of all 21 extant subfamilies to explore the evolutionary diversification and biogeography of the ants. By constraining the topology and age of the root node while using 45 fossils as minimum constraints, we converge on an age of 139-158 Mya for the modern ants. Further diversification analyses identified 10 periods with a significant change in the tempo of diversification of the ants, although these shifts did not appear to correspond to ancestral biogeographic range shifts. Likelihood-based historical biogeographic reconstructions suggest that the Neotropics were important in early ant diversification (e.g., Cretaceous). This finding coupled with the extremely high-current species diversity suggests that the Neotropics have acted as both a museum and cradle for ant diversity. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

  2. What was the ancestral function of decidual stromal cells? A model for the evolution of eutherian pregnancy.

    Science.gov (United States)

    Chavan, Arun Rajendra; Bhullar, Bhart-Anjan S; Wagner, Günter P

    2016-04-01

    In human and mouse, decidual stromal cells (DSC) are necessary for the establishment (implantation) and the maintenance of pregnancy by preventing inflammation and the immune rejection of the semi-allograft conceptus. DSC originated along the stem lineage of eutherian mammals, coincidental with the origin of invasive placentation. Surprisingly, in many eutherian lineages decidual cells are lost after the implantation phase of pregnancy, making it unlikely that DSC are necessary for the maintenance of pregnancy in these animals. In order to understand this variation, we review the literature on the fetal-maternal interface in all major eutherian clades Euarchontoglires, Laurasiatheria, Xenarthra and Afrotheria, as well as the literature about the ancestral eutherian species. We conclude that maintaining pregnancy may not be a shared derived function of DSC among all eutherian mammals. Rather, we propose that DSC originated to manage the inflammatory reaction associated with invasive implantation. We envision that this happened in a stem eutherian that had invasive placenta but still a short gestation. We further propose that extended gestation evolved independently in the major eutherian clades explaining why the major lineages of eutherian mammals differ with respect to the mechanisms maintaining pregnancy. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

    Science.gov (United States)

    Nakagome, Shigeki; Mano, Shuhei; Hasegawa, Masami

    2013-01-01

    Recent studies have reported discordant gene trees in the evolution of brown bears and polar bears. Genealogical histories are different among independent nuclear loci and between biparentally inherited autosomal DNA (aDNA) and matrilineal mitochondrial DNA (mtDNA). Based on multi-locus genomic sequences from aDNA and mtDNA, we inferred the population demography of brown and polar bears and found that brown bears have 6 times (aDNA) or more than 14 times (mtDNA) larger population sizes than polar bears and that polar bear lineage is derived from within brown bear diversity. In brown bears, the effective population size ratio of mtDNA to aDNA was at least 0.62, which deviated from the expected value of 0.25, suggesting matriarchal population due to female philopatry and male-biased migration. These results emphasize that ancestral polymorphisms and sex-biased migration may have contributed to conflicting branching patterns in brown and polar bears across aDNA genes and mtDNA.

  4. Evolution of the human diet: linking our ancestral diet to modern functional foods as a means of chronic disease prevention.

    Science.gov (United States)

    Jew, Stephanie; AbuMweis, Suhad S; Jones, Peter J H

    2009-10-01

    The evolution of the human diet over the past 10,000 years from a Paleolithic diet to our current modern pattern of intake has resulted in profound changes in feeding behavior. Shifts have occurred from diets high in fruits, vegetables, lean meats, and seafood to processed foods high in sodium and hydrogenated fats and low in fiber. These dietary changes have adversely affected dietary parameters known to be related to health, resulting in an increase in obesity and chronic disease, including cardiovascular disease (CVD), diabetes, and cancer. Some intervention trials using Paleolithic dietary patterns have shown promising results with favorable changes in CVD and diabetes risk factors. However, such benefits may be offset by disadvantages of the Paleolithic diet, which is low in vitamin D and calcium and high in fish potentially containing environmental toxins. More advantageous would be promotion of foods and food ingredients from our ancestral era that have been shown to possess health benefits in the form of functional foods. Many studies have investigated the health benefits of various functional food ingredients, including omega-3 fatty acids, polyphenols, fiber, and plant sterols. These bioactive compounds may help to prevent and reduce incidence of chronic diseases, which in turn could lead to health cost savings ranging from $2 to $3 billion per year as estimated by case studies using omega-3 and plant sterols as examples. Thus, public health benefits should result from promotion of the positive components of Paleolithic diets as functional foods.

  5. Reconstruction of the putative cervidae ancestral karyotype by chromosome painting of Siberian roe deer (Capreolus pygargus) with dromedary probes.

    Science.gov (United States)

    Dementyeva, P V; Trifonov, V A; Kulemzina, A I; Graphodatsky, A S

    2010-06-01

    The Siberian roe deer (Capreolus pygargus) is one of a few deer species presumably preserving the ancestral cervid karyotype. The comparative genomic data of the Siberian roe deer are critical for our understanding of the karyotypic relationships within artiodactyls. We have established chromosomal homologies between the Siberian roe deer and the dromedary (Camelus dromedarius) by cross-species chromosome painting with dromedary chromosome-specific painting probes. Dromedary chromosome paints detected 53 autosomal homologies in the genome of the Siberian roe deer. The identification of chromosomal homologies between the Siberian roe deer and cattle resulted from previously detected cattle-dromedary homologies. We have found 8 chromosomal rearrangements (6 fissions in the Siberian roe deer, 1 fission in the cattle and 1 inversion on the CPY11) that have separated the karyotypes of the cattle and the Siberian roe deer. The inversion on CPY11 might be an apomorphic trait of cervids, since we detected its presence in the gray brocket deer (Mazama gouazoubira). Thus our data further prove the scenario of chromosomal rearrangements that was previously proposed and add some new data. 2010 S. Karger AG, Basel.

  6. Total immediate ancestral longevity (TIAL) score as a longevity indicator: an analysis on Einstein and three of his scientist peers.

    Science.gov (United States)

    Sri Kantha, S

    2001-04-01

    The total immediate ancestral longevity (TIAL) score was first introduced by Raymond Pearl as a convenient parameter for quantitating human longevity. TIAL is the summed ages at death of the six immediate ancestors (namely parents and four grandparents) of a propositus. In this communication, I present the calculations of TIAL score for Einstein (1879--1955) and three of his scientist peers, namely Charles Darwin (1809--1882), Irene Joliot Curie (1897--1956) and Aage Bohr (1922--). The TIAL scores for Einstein, Darwin, Irene Curie and Aage Bohr were 390, 378, 372 and 436 respectively. These are markedly lower than 477 reported for Jeanne Calment, the French woman who died in 1997 at the oldest authenticated age of 122 years and 164 days. I conclude that the TIAL score is a convenient and easily quantifiable longevity parameter which anyone interested in determining his or her longevity can use to estimate a tentative number. More light could be shed on the worth of the TIAL score as a longevity indicator, if additional data on the TIAL scores of royalty and celebrities (for whom verified genealogical data are available) are reported. Copyright 2001 Harcourt Publishers Ltd.

  7. Pliocene terrace gravels of the ancestral Yukon River near Circle, Alaska: Palynology, paleobotany, paleoenvironmental reconstruction and regional correlation

    Science.gov (United States)

    Ager, T.A.; Matthews, J.V.; Yeend, W.

    1994-01-01

    Gravels deposited by the ancestral Yukon River are preserved in terrace remnants on the margins of the Yukon River valley near the village of Circle in east-central Alaska. Plant fossils recovered from sandy silt lenses within these gravels include cones and needles of Picea and Larix and a variety of seeds. Seed types include several taxa which no longer grow in Alaska, such as Epipremnum, Prunus and Weigela. Pollen types recovered from these deposits represent tree and shrub taxa that grow in interior Alaska today, such as Picea, Larix, Betula and Alnus, as well as several taxa that no longer grow in interior Alaska today, such as Pinus, Tsuga, Abies and Corylus. Pollen of herb taxa identified include Gramineae, Cyperaceae, Caryophyllaceae, Compositae, Polemonium and Epilobium. The fossil flora from the gravels near Circle are similar and probably age-equivalent to the flora recovered from the Nenana Gravel in the Alaska Range 250 km to the south. Palynological and tectonic evidence summarized in this paper now suggests that the Nenana Gravel was deposited during the early and middle Pliocene. The presence of plant fossils of Tsuga, Abies, Pinus, Weigela and Prunus suggests that the mean annual temperature (MAT) of eastern interior Alaska during the early and middle Pliocene was perhaps 7-9??C warmer and less continental than today's MAT of -6.4??C. ?? 1994.

  8. Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

    Directory of Open Access Journals (Sweden)

    Shigeki Nakagome

    Full Text Available Recent studies have reported discordant gene trees in the evolution of brown bears and polar bears. Genealogical histories are different among independent nuclear loci and between biparentally inherited autosomal DNA (aDNA and matrilineal mitochondrial DNA (mtDNA. Based on multi-locus genomic sequences from aDNA and mtDNA, we inferred the population demography of brown and polar bears and found that brown bears have 6 times (aDNA or more than 14 times (mtDNA larger population sizes than polar bears and that polar bear lineage is derived from within brown bear diversity. In brown bears, the effective population size ratio of mtDNA to aDNA was at least 0.62, which deviated from the expected value of 0.25, suggesting matriarchal population due to female philopatry and male-biased migration. These results emphasize that ancestral polymorphisms and sex-biased migration may have contributed to conflicting branching patterns in brown and polar bears across aDNA genes and mtDNA.

  9. Ancestral association between HLA and HFE H63D and C282Y gene mutations from northwest Colombia

    Directory of Open Access Journals (Sweden)

    Libia M Rodriguez

    2015-03-01

    Full Text Available A significant association between HFE gene mutations and the HLA-A*03-B*07 and HLA-A*29-B*44 haplotypes has been reported in the Spanish population. It has been proposed that these mutations are probably connected with Celtic and North African ancestry, respectively. We aimed to find the possible ancestral association between HLA alleles and haplotypes associated with the HFE gene (C282Y and H63D mutations in 214 subjects from Antioquia, Colombia. These were 18 individuals with presumed hereditary hemochromatosis (“HH” and 196 controls. The HLA-B*07 allele was in linkage disequilibrium (LD with C282Y, while HLA-A*23, A*29, HLA-B*44, and B*49 were in LD with H63D. Altogether, our results show that, although the H63D mutation is more common in the Antioquia population, it is not associated with any particular HLA haplotype, whereas the C282Y mutation is associated with HLA-A*03-B*07, this supporting a northern Spaniard ancestry.

  10. Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep.

    Science.gov (United States)

    Demars, Julie; Cano, Margarita; Drouilhet, Laurence; Plisson-Petit, Florence; Bardou, Philippe; Fabre, Stéphane; Servin, Bertrand; Sarry, Julien; Woloszyn, Florent; Mulsant, Philippe; Foulquier, Didier; Carrière, Fabien; Aletru, Mathias; Rodde, Nathalie; Cauet, Stéphane; Bouchez, Olivier; Pirson, Maarten; Tosser-Klopp, Gwenola; Allain, Daniel

    2017-07-01

    The composition and structure of fleece variation observed in mammals is a consequence of a strong selective pressure for fiber production after domestication. In sheep, fleece variation discriminates ancestral species carrying a long and hairy fleece from modern domestic sheep (Ovis aries) owning a short and woolly fleece. Here, we report that the "woolly" allele results from the insertion of an antisense EIF2S2 retrogene (called asEIF2S2) into the 3' UTR of the IRF2BP2 gene leading to an abnormal IRF2BP2 transcript. We provide evidence that this chimeric IRF2BP2/asEIF2S2 messenger 1) targets the genuine sense EIF2S2 RNA and 2) creates a long endogenous double-stranded RNA which alters the expression of both EIF2S2 and IRF2BP2 mRNA. This represents a unique example of a phenotype arising via a RNA-RNA hybrid, itself generated through a retroposition mechanism. Our results bring new insights on the sheep population history thanks to the identification of the molecular origin of an evolutionary phenotypic variation. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  11. microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate

    Science.gov (United States)

    Heimberg, Alysha M.; Cowper-Sal·lari, Richard; Sémon, Marie; Donoghue, Philip C. J.; Peterson, Kevin J.

    2010-01-01

    Hagfish and lampreys are the only living representatives of the jawless vertebrates (agnathans), and compared with jawed vertebrates (gnathostomes), they provide insight into the embryology, genomics, and body plan of the ancestral vertebrate. However, this insight has been obscured by controversy over their interrelationships. Morphological cladistic analyses have identified lampreys and gnathostomes as closest relatives, whereas molecular phylogenetic studies recover a monophyletic Cyclostomata (hagfish and lampreys as closest relatives). Here, we show through deep sequencing of small RNA libraries, coupled with genomic surveys, that Cyclostomata is monophyletic: hagfish and lampreys share 4 unique microRNA families, 15 unique paralogues of more primitive microRNA families, and 22 unique substitutions to the mature gene products. Reanalysis of morphological data reveals that support for cyclostome paraphyly was based largely on incorrect character coding, and a revised dataset is not decisive on the mono- vs. paraphyly of cyclostomes. Furthermore, we show fundamental conservation of microRNA expression patterns among lamprey, hagfish, and gnathostome organs, implying that the role of microRNAs within specific organs is coincident with their appearance within the genome and is conserved through time. Together, these data support the monophyly of cyclostomes and suggest that the last common ancestor of all living vertebrates was a more complex organism than conventionally accepted by comparative morphologists and developmental biologists. PMID:20959416

  12. Lower Cretaceous fossils from China shed light on the ancestral body plan of crown softshell turtles (Trionychidae, Cryptodira).

    Science.gov (United States)

    Brinkman, Donald; Rabi, Márton; Zhao, Lijun

    2017-07-27

    Pan-trionychids or softshell turtles are a highly specialized and widespread extant group of aquatic taxa with an evolutionary history that goes back to the Early Cretaceous. The earliest pan-trionychids had already fully developed the "classic" softshell turtle morphology and it has been impossible to resolve whether they are stem members of the family or are within the crown. This has hindered our understanding of the evolution of the two basic body plans of crown-trionychids. Thus it remains unclear whether the more heavily ossified shell of the cyclanorbines or the highly reduced trionychine morphotype is the ancestral condition for softshell turtles. A new pan-trionychid from the Early Cretaceous of Zhejiang, China, Perochelys hengshanensis sp. nov., allows a revision of softshell-turtle phylogeny. Equal character weighting resulted in a topology that is fundamentally inconsistent with molecular divergence date estimates of deeply nested extant species. In contrast, implied weighting retrieved Lower Cretaceous Perochelys spp. and Petrochelys kyrgyzensis as stem trionychids, which is fully consistent with their basal stratigraphic occurrence and an Aptian-Santonian molecular age estimate for crown-trionychids. These results indicate that the primitive morphology for soft-shell turtles is a poorly ossified shell like that of crown-trionychines and that shell re-ossification in cyclanorbines (including re-acquisition of peripheral elements) is secondary.

  13. Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon

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    Lubieniecki Krzysztof P

    2008-11-01

    Full Text Available Abstract Background Comparative genomic studies suggest that the modern day assemblage of ray-finned fishes have descended from an ancestral grouping of fishes that possessed 12–13 linkage groups. All jawed vertebrates are postulated to have experienced two whole genome duplications (WGD in their ancestry (2R duplication. Salmonids have experienced one additional WGD (4R duplication event compared to most extant teleosts which underwent a further 3R WGD compared to other vertebrates. We describe the organization of the 4R chromosomal segments of the proto-ray-finned fish karyotype in Atlantic salmon and rainbow trout based upon their comparative syntenies with two model species of 3R ray-finned fishes. Results Evidence is presented for the retention of large whole-arm affinities between the ancestral linkage groups of the ray-finned fishes, and the 50 homeologous chromosomal segments in Atlantic salmon and rainbow trout. In the comparisons between the two salmonid species, there is also evidence for the retention of large whole-arm homeologous affinities that are associated with the retention of duplicated markers. Five of the 7 pairs of chromosomal arm regions expressing the highest level of duplicate gene expression in rainbow trout share homologous synteny to the 5 pairs of homeologs with the greatest duplicate gene expression in Atlantic salmon. These regions are derived from proto-Actinopterygian linkage groups B, C, E, J and K. Conclusion Two chromosome arms in Danio rerio and Oryzias latipes (descendants of the 3R duplication can, in most instances be related to at least 4 whole or partial chromosomal arms in the salmonid species. Multiple arm assignments in the two salmonid species do not clearly support a 13 proto-linkage group model, and suggest that a 12 proto-linkage group arrangement (i.e., a separate single chromosome duplication and ancestral fusion/fissions/recombination within the putative G/H/I groupings may have occurred in

  14. La búsqueda del espíritu traslativo de la compraventa consensual: un antiguo instrumento en la cultura jurídica latinoamericana para el fomento del comercio común

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    Diego Fernando Monje Mayorca

    2015-06-01

    Full Text Available Este trabajo pretende develar históricamente la característica consensual del contrato de compraventa y su influjo en la forma de concebir teóricamente el fenómeno de la transferencia de la propiedad en el ámbito de la cultura jurídica occidental, con el fin práctico de promocionar la unificación de la técnica del ‘solo consensu’ y la teoría romanista del título y el modo, situación factible que a la postre contribuirá ostensiblemente al mejoramiento de las relaciones comerciales de aquellos países que hoy comparten un ancestral parentesco derivado del derecho romano.

  15. The presence of the ancestral insect telomeric motif in kissing bugs (Triatominae) rules out the hypothesis of its loss in evolutionarily advanced Heteroptera (Cimicomorpha)

    Science.gov (United States)

    Pita, Sebastián; Panzera, Francisco; Mora, Pablo; Vela, Jesús; Palomeque, Teresa; Lorite, Pedro

    2016-01-01

    Abstract Next-generation sequencing data analysis on Triatoma infestans Klug, 1834 (Heteroptera, Cimicomorpha, Reduviidae) revealed the presence of the ancestral insect (TTAGG)n telomeric motif in its genome. Fluorescence in situ hybridization confirms that chromosomes bear this telomeric sequence in their chromosomal ends. Furthermore, motif amount estimation was about 0.03% of the total genome, so that the average telomere length in each chromosomal end is almost 18 kb long. We also detected the presence of (TTAGG)n telomeric repeat in mitotic and meiotic chromosomes in other three species of Triatominae: Triatoma dimidiata Latreille, 1811, Dipetalogaster maxima Uhler, 1894, and Rhodnius prolixus Ståhl, 1859. This is the first report of the (TTAGG)n telomeric repeat in the infraorder Cimicomorpha, contradicting the currently accepted hypothesis that evolutionarily recent heteropterans lack this ancestral insect telomeric sequence. PMID:27830050

  16. The genome of the THE I human transposable repetitive elements is composed of a basic motif homologous to an ancestral immunoglobulin gene sequence.

    OpenAIRE

    Hakim, I; Amariglio, N; Grossman, Z; Simoni-Brok, F; Ohno, S; Rechavi, G

    1994-01-01

    Amplification of rearranged human immunoglobulin heavy-chain genes using the polymerase chain reaction resulted unexpectedly in the amplification of human transposable repetitive element genomes. These were identified as members of the THE I (transposon-like human element I) transposable element family. Analysis of the THE I sequences revealed the presence of several copies of the ancestral building block described > 10 years ago by Ohno and coworkers as the primordial immunoglobulin sequence...

  17. The canonical twin-arginine translocase components are not required for secretion of folded green fluorescent protein from the ancestral strain of Bacillus subtilis.

    Science.gov (United States)

    Snyder, Anthony J; Mukherjee, Sampriti; Glass, J Kyle; Kearns, Daniel B; Mukhopadhyay, Suchetana

    2014-05-01

    Cellular processes, such as the digestion of macromolecules, phosphate acquisition, and cell motility, require bacterial secretion systems. In Bacillus subtilis, the predominant protein export pathways are Sec (generalized secretory pathway) and Tat (twin-arginine translocase). Unlike Sec, which secretes unfolded proteins, the Tat machinery secretes fully folded proteins across the plasma membrane and into the medium. Proteins are directed for Tat-dependent export by N-terminal signal peptides that contain a conserved twin-arginine motif. Thus, utilizing the Tat secretion system by fusing a Tat signal peptide is an attractive strategy for the production and export of heterologous proteins. As a proof of concept, we expressed green fluorescent protein (GFP) fused to the PhoD Tat signal peptide in the laboratory and ancestral strains of B. subtilis. Secretion of the Tat-GFP construct, as well as secretion of proteins in general, was substantially increased in the ancestral strain. Furthermore, our results show that secreted, fluorescent GFP could be purified directly from the extracellular medium. Nonetheless, export was not dependent on the known Tat secretion components or the signal peptide twin-arginine motif. We propose that the ancestral strain contains additional Tat components and/or secretion regulators that were abrogated following domestication.

  18. An ancestral haplotype of the human PERIOD2 gene associates with reduced sensitivity to light-induced melatonin suppression.

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    Tokiho Akiyama

    Full Text Available Humans show various responses to the environmental stimulus in individual levels as "physiological variations." However, it has been unclear if these are caused by genetic variations. In this study, we examined the association between the physiological variation of response to light-stimulus and genetic polymorphisms. We collected physiological data from 43 subjects, including light-induced melatonin suppression, and performed haplotype analyses on the clock genes, PER2 and PER3, exhibiting geographical differentiation of allele frequencies. Among the haplotypes of PER3, no significant difference in light sensitivity was found. However, three common haplotypes of PER2 accounted for more than 96% of the chromosomes in subjects, and 1 of those 3 had a significantly low-sensitive response to light-stimulus (P < 0.05. The homozygote of the low-sensitive PER2 haplotype showed significantly lower percentages of melatonin suppression (P < 0.05, and the heterozygotes of the haplotypes varied their ratios, indicating that the physiological variation for light-sensitivity is evidently related to the PER2 polymorphism. Compared with global haplotype frequencies, the haplotype with a low-sensitive response was more frequent in Africans than in non-Africans, and came to the root in the phylogenetic tree, suggesting that the low light-sensitive haplotype is the ancestral type, whereas the other haplotypes with high sensitivity to light are the derived types. Hence, we speculate that the high light-sensitive haplotypes have spread throughout the world after the Out-of-Africa migration of modern humans.

  19. Light from dark: A relictual troglobite reveals a broader ancestral distribution for kimulid harvestmen (Opiliones: Laniatores: Kimulidae) in South America

    Science.gov (United States)

    Ceccarelli, F. Sara; Monte, Bruno G. O.; Proud, Daniel N.; DaSilva, Márcio Bernardino; Bichuette, Maria E.

    2017-01-01

    A new troglobitic harvestman, Relictopiolus galadriel gen. nov et sp. nov., is described from Olhos d’Água cave, Itacarambi, Minas Gerais State, Brazil. Morphological characters, including male genitalia and exomorphology, suggest that this species belongs to the family Kimulidae, and it appears to share the greatest similarities with Tegipiolus pachypus. Bayesian inference analyses of a molecular dataset strongly support the inclusion of this species in Kimulidae and confirm the hypothesized sister-group relationship between R. galadriel and T. pachypus. A time calibrated phylogeny indicates that these sister-taxa diverged from a common ancestor approximately 40 Mya, during the Paleogene. The current range of Kimulidae illustrates a remarkable disjunct distribution, and leads us to hypothesize that the ancestral distribution of Kimulidae was once much more widespread across eastern Brazil. This may be attributed to the Eocene radiation associated with the warming (and humidifying) events in the Cenozoic when the best conditions for evergreen tropical vegetation in South America were established and followed by the extinction of kimulid epigean populations together with the retraction of rain forests during the Oligocene to Miocene cooling. The discovery of this relictual troglobite indicates that the Olhos d’Água cave was a stable refugium for this ancient lineage of kimulids and acted as a "museum" of biodiversity. Our findings, considered collectively with the diverse troglofauna of the Olhos d’Água cave, highlight it as one of the most important hotspots of troglobite diversity and endemism in the Neotropics. Given the ecological stresses on this habitat, the cavernicolous fauna are at risk of extinction and we emphasize the urgent need for appropriate conservation actions. Finally, we propose the transfer of Acanthominua, Euminua, Euminuoides and Pseudominua from Kimulidae to Zalmoxidae, resulting in two new synonymies and 13 new combinations. PMID

  20. Cross-species chromosome painting in bats from Madagascar: the contribution of Myzopodidae to revealing ancestral syntenies in Chiroptera.

    Science.gov (United States)

    Richards, Leigh R; Rambau, Ramugondo V; Lamb, Jennifer M; Taylor, Peter J; Yang, Fengtang; Schoeman, M Corrie; Goodman, Steven M

    2010-09-01

    The chiropteran fauna of Madagascar comprises eight of the 19 recognized families of bats, including the endemic Myzopodidae. While recent systematic studies of Malagasy bats have contributed to our understanding of the morphological and genetic diversity of the island's fauna, little is known about their cytosystematics. Here we investigate karyotypic relationships among four species, representing four families of Chiroptera endemic to the Malagasy region using cross-species chromosome painting with painting probes of Myotis myotis: Myzopodidae (Myzopoda aurita, 2n = 26), Molossidae (Mormopterus jugularis, 2n = 48), Miniopteridae (Miniopterus griveaudi, 2n = 46), and Vespertilionidae (Myotis goudoti, 2n = 44). This study represents the first time a member of the family Myzopodidae has been investigated using chromosome painting. Painting probes of M. myotis were used to delimit 29, 24, 23, and 22 homologous chromosomal segments in the genomes of M. aurita, M. jugularis, M. griveaudi, and M. goudoti, respectively. Comparison of GTG-banded homologous chromosomes/chromosomal segments among the four species revealed the genome of M. aurita has been structured through 14 fusions of chromosomes and chromosomal segments of M. myotis chromosomes leading to a karyotype consisting solely of bi-armed chromosomes. In addition, chromosome painting revealed a novel X-autosome translocation in M. aurita. Comparison of our results with published chromosome maps provided further evidence for karyotypic conservatism within the genera Mormopterus, Miniopterus, and Myotis. Mapping of chromosomal rearrangements onto a molecular consensus phylogeny revealed ancestral syntenies shared between Myzopoda and other bat species of the infraorders Pteropodiformes and Vespertilioniformes. Our study provides further evidence for the involvement of Robertsonian (Rb) translocations and fusions/fissions in chromosomal evolution within Chiroptera.

  1. Phylogenetic analysis of glycerol 3-phosphate acyltransferases in opisthokonts reveals unexpected ancestral complexity and novel modern biosynthetic components.

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    Heather C Smart

    Full Text Available Glycerolipid synthesis represents a central metabolic process of all forms of life. In the last decade multiple genes coding for enzymes responsible for the first step of the pathway, catalyzed by glycerol 3-phosphate acyltransferase (GPAT, have been described, and characterized primarily in model organisms like Saccharomyces cerevisiae and mice. Notoriously, the fungal enzymes share low sequence identity with their known animal counterparts, and the nature of their homology is unclear. Furthermore, two mitochondrial GPAT isoforms have been described in animal cells, while no such enzymes have been identified in Fungi. In order to determine if the yeast and mammalian GPATs are representative of the set of enzymes present in their respective groups, and to test the hypothesis that metazoan orthologues are indeed absent from the fungal clade, a comparative genomic and phylogenetic analysis was performed including organisms spanning the breadth of the Opisthokonta supergroup. Surprisingly, our study unveiled the presence of 'fungal' orthologs in the basal taxa of the holozoa and 'animal' orthologues in the basal holomycetes. This includes a novel clade of fungal homologues, with putative peroxisomal targeting signals, of the mitochondrial/peroxisomal acyltransferases in Metazoa, thus potentially representing an undescribed metabolic capacity in the Fungi. The overall distribution of GPAT homologues is suggestive of high relative complexity in the ancestors of the opisthokont clade, followed by loss and sculpting of the complement in the descendent lineages. Divergence from a general versatile metabolic model, present in ancestrally deduced GPAT complements, points to distinctive contributions of each GPAT isoform to lipid metabolism and homeostasis in contemporary organisms like humans and their fungal pathogens.

  2. Light from dark: A relictual troglobite reveals a broader ancestral distribution for kimulid harvestmen (Opiliones: Laniatores: Kimulidae in South America.

    Directory of Open Access Journals (Sweden)

    Abel Pérez-González

    Full Text Available A new troglobitic harvestman, Relictopiolus galadriel gen. nov et sp. nov., is described from Olhos d'Água cave, Itacarambi, Minas Gerais State, Brazil. Morphological characters, including male genitalia and exomorphology, suggest that this species belongs to the family Kimulidae, and it appears to share the greatest similarities with Tegipiolus pachypus. Bayesian inference analyses of a molecular dataset strongly support the inclusion of this species in Kimulidae and confirm the hypothesized sister-group relationship between R. galadriel and T. pachypus. A time calibrated phylogeny indicates that these sister-taxa diverged from a common ancestor approximately 40 Mya, during the Paleogene. The current range of Kimulidae illustrates a remarkable disjunct distribution, and leads us to hypothesize that the ancestral distribution of Kimulidae was once much more widespread across eastern Brazil. This may be attributed to the Eocene radiation associated with the warming (and humidifying events in the Cenozoic when the best conditions for evergreen tropical vegetation in South America were established and followed by the extinction of kimulid epigean populations together with the retraction of rain forests during the Oligocene to Miocene cooling. The discovery of this relictual troglobite indicates that the Olhos d'Água cave was a stable refugium for this ancient lineage of kimulids and acted as a "museum" of biodiversity. Our findings, considered collectively with the diverse troglofauna of the Olhos d'Água cave, highlight it as one of the most important hotspots of troglobite diversity and endemism in the Neotropics. Given the ecological stresses on this habitat, the cavernicolous fauna are at risk of extinction and we emphasize the urgent need for appropriate conservation actions. Finally, we propose the transfer of Acanthominua, Euminua, Euminuoides and Pseudominua from Kimulidae to Zalmoxidae, resulting in two new synonymies and 13 new

  3. Somatostatin signaling system as an ancestral mechanism: Myoregulatory activity of an Allatostatin-C peptide in Hydra.

    Science.gov (United States)

    Alzugaray, María Eugenia; Hernández-Martínez, Salvador; Ronderos, Jorge Rafael

    2016-08-01

    The coordination of physiological processes requires precise communication between cells. Cellular interactions allow cells to be functionally related, facilitating the maintaining of homeostasis. Neuropeptides functioning as intercellular signals are widely distributed in Metazoa. It is assumed that neuropeptides were the first intercellular transmitters, appearing early during the evolution. In Cnidarians, neuropeptides are mainly involved in neurotransmission, acting directly or indirectly on epithelial muscle cells, and thereby controlling coordinated movements. Allatostatins are a group of chemically unrelated neuropeptides that were originally characterized based on their ability to inhibit juvenil hormone synthesis in insects. Allatostatin-C has pleiotropic functions, acting as myoregulator in several insects. In these studies, we analyzed the myoregulatory effect of Aedes aegypti Allatostatin-C in Hydra sp., a member of the phylum Cnidaria. Allatostatin-C peptide conjugated with Qdots revealed specifically distributed cell populations that respond to the peptide in different regions of hydroids. In vivo physiological assays using Allatostatin-C showed that the peptide induced changes in shape and length in tentacles, peduncle and gastrovascular cavity. The observed changes were dose and time dependent suggesting the physiological nature of the response. Furthermore, at highest doses, Allatostatin-C induced peristaltic movements of the gastrovascular cavity resembling those that occur during feeding. In silico search of putative Allatostatin-C receptors in Cnidaria showed that genomes predict the existence of proteins of the somatostatin/Allatostatin-C receptors family. Altogether, these results suggest that Allatostatin-C has myoregulatory activity in Hydra sp, playing a role in the control of coordinated movements during feeding, indicating that Allatostatin-C/Somatostatin based signaling might be an ancestral mechanism. Copyright © 2016 Elsevier Inc. All

  4. Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation

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    Adams Josephine C

    2006-04-01

    Full Text Available Abstract Background Thrombospondins (TSPs are evolutionarily-conserved, extracellular, calcium-binding glycoproteins with important roles in cell-extracellular matrix interactions, angiogenesis, synaptogenesis and connective tissue organisation. Five TSPs, designated TSP-1 through TSP-5, are encoded in the human genome. All but one have known roles in acquired or inherited human diseases. To further understand the roles of TSPs in human physiology and pathology, it would be advantageous to extend the repertoire of relevant vertebrate models. In general the zebrafish is proving an excellent model organism for vertebrate biology, therefore we set out to evaluate the status of TSPs in zebrafish and two species of pufferfish. Results We identified by bioinformatics that three fish species encode larger numbers of TSPs than vertebrates, yet all these sequences group as homologues of TSP-1 to -4. By phylogenomic analysis of neighboring genes, we uncovered that, in fish, a TSP-4-like sequence is encoded from the gene corresponding to the tetrapod TSP-5 gene. Thus, all TSP genes show conservation of synteny between fish and tetrapods. In the human genome, the TSP-1, TSP-3, TSP-4 and TSP-5 genes lie within paralogous regions that provide insight into the ancestral genomic context of vertebrate TSPs. Conclusion A new model for TSP evolution in vertebrates is presented. The TSP-5 protein sequence has evolved rapidly from a TSP-4-like sequence as an innovation in the tetrapod lineage. TSP biology in fish is complicated by the presence of additional lineage- and species-specific TSP paralogues. These novel results give deeper insight into the evolution of TSPs in vertebrates and open new directions for understanding the physiological and pathological roles of TSP-4 and TSP-5 in humans.

  5. Toponimia del tejo en la península Ibérica

    OpenAIRE

    García Pérez, Guillermo

    2009-01-01

    El tejo (Taxus baccata, L.) es una especie protegida, en peligro de extinción, en gran parte de la Península Ibérica. Su longevidad (hasta 2.500 o más años en ciertos casos), su capacidad de regeneración (algunos rebrotan tras el incendio del monte), su toxicidad (puede llegar a ser mortal), su uso medicinal ancestral (contra la picadura de ofidios, el dolor de muelas, etc.) o moderno (contra ciertos tipos de cáncer), su belleza ornamental o paisajística, el valor de su madera (du...

  6. del cambio

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    Alejandro Canales

    2006-01-01

    Full Text Available El artículo analiza las propuestas y los compromisos en materia de cobertura y de financiamiento en el periodo 2000-2006. En particular, revisa las modificaciones y los ajustes de los tres principales documentos en los que se expresaron las iniciativas: el de la Asociación Nacional de Universidades e Instituciones de Educación Superior, el del equipo de la transición y el programa sectorial. Los resultados muestran que las cifras de atención a la demanda educativa e inversión quedaron lejos de las metas autoimpuestas por el gobierno federal y que será necesario realizar mayores esfuerzos para atender tales desafíos.

  7. Intraplate mountain building in response to continent continent collision—the Ancestral Rocky Mountains (North America) and inferences drawn from the Tien Shan (Central Asia)

    Science.gov (United States)

    Dickerson, Patricia Wood

    2003-04-01

    The intraplate Ancestral Rocky Mountains of western North America extend from British Columbia, Canada, to Chihuahua, Mexico, and formed during Early Carboniferous through Early Permian time in response to continent-continent collision of Laurentia with Gondwana—the conjoined masses of Africa and South America, including Yucatán and Florida. Uplifts and flanking basins also formed within the Laurentian Midcontinent. On the Gondwanan continent, well inboard from the marginal fold belts, a counterpart structural array developed during the same period. Intraplate deformation began when full collisional plate coupling had been achieved along the continental margin; the intervening ocean had been closed and subduction had ceased—that is, the distinction between upper versus lower plates became moot. Ancestral Rockies deformation was not accompanied by volcanism. Basement shear zones that formed during Mesoproterozoic rifting of Laurentia were reactivated and exerted significant control on the locations, orientations, and modes of displacement on late Paleozoic faults. Ancestral Rocky Mountain uplifts extend as far south as Chihuahua and west Texas (28° to 33°N, 102° to 109°W) and include the Florida-Moyotes, Placer de Guadalupe-Carrizalillo, Ojinaga-Tascotal and Hueco Mountain blocks, as well as the Diablo and Central Basin Platforms. All are cored with Laurentian Proterozoic crystalline basement rocks and host correlative Paleozoic stratigraphic successions. Pre-late Paleozoic deformational, thermal, and metamorphic histories are similar as well. Southern Ancestral Rocky Mountain structures terminate along a line that trends approximately N 40°E (present coordinates), a common orientation for Mesoproterozoic extensional structures throughout southern to central North America. Continuing Tien Shan intraplate deformation (Central Asia) has created an analogous array of uplifts and basins in response to the collision of India with Eurasia, beginning in late

  8. 7 Capillas del Sur

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    Patricio Morgado U.

    1996-05-01

    Full Text Available 7 Capillas del Sur es un extracto de la Tesis de Grado del arquitecto Patricio Morgado Uribe "Reconstrucción de las Iglesias del Sur después del terremoto de 1960 por la Escuela de Arquitectura de la UCV. El caso de Nuestra Señora de La Candelaria".

  9. Whirling in the late Permian: ancestral Gyrinidae show early radiation of beetles before Permian-Triassic mass extinction.

    Science.gov (United States)

    Yan, Evgeny V; Beutel, Rolf G; Lawrence, John F

    2018-03-16

    Gyrinidae are a charismatic group of highly specialized beetles, adapted for a unique lifestyle of swimming on the water surface. They prey on drowning insects and other small arthropods caught in the surface film. Studies based on morphological and molecular data suggest that gyrinids were the first branch splitting off in Adephaga, the second largest suborder of beetles. Despite its basal position within this lineage and a very peculiar morphology, earliest Gyrinidae were recorded not earlier than from the Upper Triassic. Tunguskagyrus. with the single species Tunguskagyrus planus is described from Late Permian deposits of the Anakit area in Middle Siberia. The genus is assigned to the stemgroup of Gyrinidae, thus shifting back the minimum age of this taxon considerably: Tunguskagyrus demonstrates 250 million years of evolutionary stability for a very specialized lifestyle, with a number of key apomorphies characteristic for these epineuston predators and scavengers, but also with some preserved ancestral features not found in extant members of the family. It also implies that major splitting events in this suborder and in crown group Coleoptera had already occurred in the Permian. Gyrinidae and especially aquatic groups of Dytiscoidea flourished in the Mesozoic (for example Coptoclavidae and Dytiscidae) and most survive until the present day, despite the dramatic "Great Dying" - Permian-Triassic mass extinction, which took place shortly (in geological terms) after the time when Tunguskagyrus lived. Tunguskagyrus confirms a Permian origin of Adephaga, which was recently suggested by phylogenetic "tip-dating" analysis including both fossil and Recent gyrinids. This also confirms that main splitting events leading to the "modern" lineages of beetles took place before the Permian-Triassic mass extinction. Tunguskagyrus shows that Gyrinidae became adapted to swimming on the water surface long before Mesozoic invasions of the aquatic environment took place

  10. Perfil del visitante de naturaleza en Latinoamérica: prácticas, motivaciones e imaginarios. Estudio comparativo entre México y Ecuador.

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    Maribel Osorio García

    2017-01-01

    Full Text Available El artículo expone los resultados de una investigación interinstitucional realizada sobre el com‑ parativo entre el perfil de los visitantes que llegan al Área de Protección de Flora y Fauna Nevado de Toluca, México y a la Reserva Ecológica Cotacachi Cayapas, Ecuador, ambas áreas naturales protegidas. Se toma como postura teórica que el comportamiento del visitante de naturaleza tiene una explicación no sólo a partir de sus motivaciones e interés ambiental, sino desde sus imaginarios. La metodología aplicada fue de carácter cuan‑ titativo a través de una encuesta realizada en cada sitio, considerando las motivaciones, el comportamiento de viaje, las prácticas ambientales y los imaginarios. Mediante un cruce de variables se caracterizaron cuatro perfiles: el recreativo, el deportivo, el de convivencia y el de contacto, siendo el primero el dominante. En cada caso se identifica el modo de interrelación que se establece con la naturaleza.

  11. Written Exercises: Ancestral Magic and Emergent Intellectuals in Mia Couto, Lhoussain Azergui and Dorota Masłowska

    Directory of Open Access Journals (Sweden)

    Ewa Łukaszyk

    2016-12-01

    Full Text Available Written Exercises: Ancestral Magic and Emergent Intellectuals in Mia Couto, Lhoussain Azergui and Dorota Masłowska The article consists in a comparative reading of three novels: Um rio chamado tempo by Mia Couto, Le pain des corbeaux by Lhoussain Azergui and Paw królowej by Dorota Masłowska. In spite of the difference of the historical circumstances of Mozambique, Morocco and Poland, these three books meet at an intersecting point: the emergence of an intelligentsia that uses literacy and writing as an instrument to deconstruct the post-colonial concept of nation and to operate a trans-colonial renegotiation of identity. By the notion of trans-colonial, I understand the opposition against new kinds of symbolic violence that emerged after the end of the colonial period; here this new form of oppression is related to the concept of national unity – an artificial construct that leaves no place for a dualism or pluralism of cultural reality (two shores of the Zambezi river, Arab and Berber dualism in Morocco, “small homelands” in Poland. The young heroes of the novels grasp the pen in order to break through the falseness or the taboos created by the fathers, establishing, at the same time, the relation of solidarity with the world of the grandfathers. The act of writing becomes an actualization of the ancestral universe of magic. The settlement of accounts with the parental generation concerns the vision of nation built upon the resistance against the colonizer (it also refers to the Polish cultural formation, based on the tradition of uprisings and resistance against the Russians.   Ćwiczenia pisemne: magia przodków i nowi intelektualiści w powieściach Mii Couto, Lhoussaina Azerguiego i Doroty Masłowskiej Na podstawie powieści Um rio chamado tempo, uma casa chamada terra Mii Couto (2002, Le pain des corbeaux Lhoussaina Azerguiego (2012 oraz Paw królowej Doroty Masłowskiej (2005 dokonano analizy zjawiska wyłonienia się nowej

  12. Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating subtype B envelope.

    Science.gov (United States)

    Doria-Rose, N A; Learn, G H; Rodrigo, A G; Nickle, D C; Li, F; Mahalanabis, M; Hensel, M T; McLaughlin, S; Edmonson, P F; Montefiori, D; Barnett, S W; Haigwood, N L; Mullins, J I

    2005-09-01

    Human immunodeficiency virus type 1 (HIV-1) is a difficult target for vaccine development, in part because of its ever-expanding genetic diversity and attendant capacity to escape immunologic recognition. Vaccine efficacy might be improved by maximizing immunogen antigenic similarity to viruses likely to be encountered by vaccinees. To this end, we designed a prototype HIV-1 envelope vaccine using a deduced ancestral state for the env gene. The ancestral state reconstruction method was shown to be >95% accurate by computer simulation and 99.8% accurate when estimating the known inoculum used in an experimental infection study in rhesus macaques. Furthermore, the deduced ancestor gene differed from the set of sequences used to derive the ancestor by an average of 12.3%, while these latter sequences were an average of 17.3% different from each other. A full-length ancestral subtype B HIV-1 env gene was constructed and shown to produce a glycoprotein of 160 kDa that bound and fused with cells expressing the HIV-1 coreceptor CCR5. This Env was also functional in a virus pseudotype assay. When either gp160- or gp140-expressing plasmids and recombinant gp120 were used to immunize rabbits in a DNA prime-protein boost regimen, the artificial gene induced immunoglobulin G antibodies capable of weakly neutralizing heterologous primary HIV-1 strains. The results were similar for rabbits immunized in parallel with a natural isolate, HIV-1 SF162. Further design efforts to better present conserved neutralization determinants are warranted.

  13. Mapuche Ancestral Recovery of Land. The Lof Inkaial WalMapu Meu case of study (Nahuel Huapí National Park, Río Negro, Argentina

    Directory of Open Access Journals (Sweden)

    Guido Galafassi

    2012-07-01

    Full Text Available The aim of this paper is to present and analyze the case of a recent social mobilization which involved a Mapuche community in the southern region of Argentina, known as Patagonia. An “ancestral recovery of land” was claimed to be the objective of the action. Several conflicts emerged due to the fact that the land in conflict is part of the Nahuel Huapi National Park, which implied a straightforward questioning of the National State rights over territory. Apart from that, the recovery process was strongly rejected by local residents. This brought about a new conflict that required the local government's mediation.

  14. Personal and Social Transformation in the Health Area through Education: A Brief Journey from the Ancestral Indigenous Wisdom to the Modern Tyranny of Healthiness

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    Andrés de Muller

    2015-09-01

    Full Text Available This paper aims at claiming the ancestral wisdom of indigenous people in the health area. It analyzes how health has been commodified in the interest of large companies (particularly those related to the pharmaceutical industry to the detriment of a holistic definition of wellness through education. Furthermore, the concept of health as a right disagrees with such commodification or sale to the highest bidder, which prompts dehumanization of health services and public misinformation. The abundance of self-proclaimed gurus or healers who appeal to autosuggestion contributes both to confusion and to an unhealthy cult of healthiness.

  15. Proto-Jabutí: a first attempt to reconstruct the ancestral language of the Arikapú and the Djeoromitxí

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    Hein van der Voort

    2007-08-01

    Full Text Available The Arikapú and Djeoromitxí languages form a small linguistic family in southern Rondônia, known as Jabutí. The languages are highly endangered and high quality data have become available only recently. This article is intended to create a basis of evidence for Curt Nimuendajú’s hypothesis that the Jabutí language family belongs to the Macro-Jê linguistic stock. After short descriptive sketches of both Jabutí languages and the historical and sociocultural background, the article focusses on the reconstruction of the ancestral language, Proto-Jabutí, following the principles of the historical-comparative method.

  16. CONDICIONES ACTUALES DE LA MINERIA DEL ORO EN LA ZONA ANDINA DEL DEPARTAMENTO DE NARIÑO

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    Carlos Córdoba Barahona

    2007-07-01

    Full Text Available El artículo analiza las condiciones actuales del oro en la zona andina del departamento de Nariño a partir de sus antecedentes históricos. Se aborda aspectos como costos y beneficios de esta actividad, que permiten sugerir las causas de la escasa inversión por parte de las compañías extranjeras en esta área geográfica, mientras han logrado entrar con éxito a otros departamentos colombianos como Antioquia, Santander, Caldas y que relativamente, dejan a Nariño por fuera de sus intereses. Se hace una propuesta que incluye nuevas estrategias de desarrollo para dinamizar el sector de la minería y se concluye que esta actividad, no obstante ser centenaria, permanece en su ancestral atraso, es decir, entre la subsistencia y la actividad artesanal. Sin embargo, tiene un potencial en recursos de minerales metálicos particularmente del oro, cuyo aporte al PIB podría ser más significativo.

  17. Epistasis effects of multiple ancestral-consensus amino acid substitutions on the thermal stability of glycerol kinase from Cellulomonas sp. NT3060.

    Science.gov (United States)

    Fukuda, Yasuhisa; Abe, Asuka; Tamura, Takashi; Kishimoto, Takahide; Sogabe, Atsushi; Akanuma, Satoshi; Yokobori, Shin-Ichi; Yamagishi, Akihiko; Imada, Katsumi; Inagaki, Kenji

    2016-05-01

    Thermostable variants of the Cellulomonas sp. NT3060 glycerol kinase have been constructed by through the introduction of ancestral-consensus mutations. We produced seven mutants, each having an ancestral-consensus amino acid residue that might be present in the common ancestors of both bacteria and of archaea, and that appeared most frequently at the position of 17 glycerol kinase sequences in the multiple sequence alignment. The thermal stabilities of the resulting mutants were assessed by determining their melting temperatures (Tm), which was defined as the temperature at which 50% of the initial catalytic activity is lost after 15 min of incubation, as well as when the half-life of the catalytic activity occurs at a temperature of 60°C (t1/2). Three mutants showed increased stabilities compared to the wild-type protein. We then produced five more mutants with multiple amino acid substitutions. Some of the resulting mutants showed thermal stabilities much greater than those expected given the stabilities of the respective mutants with single mutations. Therefore, the effects of mutations are not always simply additive and some amino acid substitutions, which do not affect or only slightly improve stability when individually introduced into the protein, show substantial stabilizing effects in combination with other mutations. Copyright © 2015 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  18. Tetracycline-resistant coliforms in the effluent of the main sewage treatment plant in Hamilton, Ontario - do they have a common ancestral strain?

    Science.gov (United States)

    Sorger, George J; Quinn, James S

    2010-07-01

    Sewage, a major source of bacterial contamination of the environment, can be an important health hazard. The presence of antibiotic-resistant bacteria in sewage can exacerbate this problem. The sources of antibiotic-resistant bacteria in sewage are, for this reason, worth identifying and addressing. The bacterial flora in the effluent of the Woodward Avenue Wastewater Treatment Plant (WAWTP) in Hamilton, Ontario, Canada, contains many antibiotic-resistant coliforms. Here we ask, are the antibiotic resistance genes in the coliforms in the effluent of WAWTP descended from a recent common ancestor strain? If so, the source could be identified and eliminated. If, on the other hand, the antibiotic resistance genes in the bacterial flora of the WAWTP have more than one origin, identification and elimination of the source(s) could be difficult. There was considerable diversity of antibiotic resistance patterns and antibiotic resistance genes among the effluent and influent coliform isolates of the WAWTP, suggesting multiple genetic ancestry. The patterns of horizontal transmissibility and sequence differences in the genes tetA and tetE among these coliform isolates also suggest that they have no one predominant ancestral strain. Using the same logic, the evidence presented here is not compatible with a single ancestral origin of the antibiotic resistance genes in the isolates described herein.

  19. Acerca del moho

    Science.gov (United States)

    El moho forma parte del medio ambiente natural. Afuera del hogar, el moho juega un papel en la naturaleza al desintegrar materias organicas tales como las hojas que se han caido o los arboles muertos. El moho puede crecer adentro del hogar cuando las espor

  20. Del bit al qubit

    OpenAIRE

    Torras Font, Josep

    2011-01-01

    Aquest document pretén donar una visió del desenvolupament dels computadors electrònics i dels components que els han fet possibles. Dintre de les opcions de futur en computació, també intenta donar una visió de les bases en que es fonamenta la computació quàntica.

  1. Sindrome del túnel del carpo

    OpenAIRE

    García Parra, Gabriela Cristina; Gómez Eslava, Andrés Fernando; González Artunduaga, Eliana Andrea

    2009-01-01

    El Síndrome del Túnel de Carpo (STC) es un atrapamiento del nervio mediano en el túnel del carpo; es más común entre las mujeres y se considera como una enfermedad ocupacional. Su etiología es diversa, comprendiendo causas locales, regionales y sistémicas. Sin embargo, en la práctica clínica esta se desconoce hasta en el 50% de los casos. Sobre su fisiopatología poco se conoce; se proponen tres teorías para explicarla: la compresión, la insuficiencia microvascular y la teoría vibratoria, las ...

  2. Algunas aclaraciones acerca del conocimiento del singular.

    Directory of Open Access Journals (Sweden)

    Carlos Llano Cifuentes

    2013-11-01

    Full Text Available Llano tries to explain the main purpose of El Conocimiento del Singular, showing how the individuals about which the book is concerned are basically human individuals: people as decision makers.

  3. SULL'ORIGINE DEL ROMBO DEL TUONO

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    g. zanotelli

    1951-06-01

    Full Text Available Si interpretano le cause fisiche di due fra le più singolari caratteristichedel rombo del tuono, e cioè la sua lunga persistenza ed iltimbro eminentemente ricco di suoni bassi. Per quanto altri autoriavessero in passato localizzato l'origine di questi fatti in svariate edoccasionali circostanze di ambiente, si è potuto dimostrare teoricamentenel presente lavoro come gli ammassi di goccioline di acqua checostituiscono le formazioni nuvolose esercitino una riflessione selettivasulle onde sonore incidenti: precisamente tale riflessione avviene inmisura apprezzabile solo per le componenti della perturbazione sonora,originata dallo scoppio del fulmine, di frequenza inferiore acerte due frequenze di taglio, proprie, l'ima del fenomeno di alternacondensazione ed evaporazione delle goccioline sotto l'azione delle variazionidi pressione sonora, e l'altra del parziale trascinamento dellegoccioline stesse nel moto dell'onda sonora per effetto della viscositàdell'aria. In base a questi risultati e tenuta anche presente la eventualitàdi più riflessioni successive si giustifica come, a causa dellabassa velocità del suono nell'atmosfera e della relativamente grandedistanza delle nubi, il rumore del tuono possa persistere a lungo; sipuò inoltre prevedere che il timbro sonoro debba farsi sempre piùcupo, via via che il rimbombo si prolunga.

  4. Field-trip guide to subaqueous volcaniclastic facies in the Ancestral Cascades arc in southern Washington State—The Ohanapecosh Formation and Wildcat Creek beds

    Science.gov (United States)

    Jutzeler, Martin; McPhie, Jocelyn

    2017-06-27

    Partly situated in the idyllic Mount Rainier National Park, this field trip visits exceptional examples of Oligocene subaqueous volcaniclastic successions in continental basins adjacent to the Ancestral Cascades arc. The >800-m-thick Ohanapecosh Formation (32–26 Ma) and the >300-m-thick Wildcat Creek (27 Ma) beds record similar sedimentation processes from various volcanic sources. Both show evidence of below-wave-base deposition, and voluminous accumulation of volcaniclastic facies from subaqueous density currents and suspension settling. Eruption-fed facies include deposits from pyroclastic flows that crossed the shoreline, from tephra fallout over water, and from probable Surtseyan eruptions, whereas re-sedimented facies comprise subaqueous density currents and debris flow deposits.

  5. Alcances translocales de cultos ancestrales: El caso de las danzas rituales aztecas (Translocales reaches of ancestral cults: The case of the Aztec ritual dances

    Directory of Open Access Journals (Sweden)

    Renée de la Torre

    2007-03-01

    Full Text Available Este trabajo trata sobre las transformaciones de identidad que se gestan en los grupos de danza conocidos como aztecas o concheros en su intercambio cultural y encuentro con redes espirituales alternativas o conocidas como movimientos de espiritualidad Nueva Era (o New Age. El objetivo de este trabajo es dar cuenta de los procesos a partir de los cuales la tradición dancística conchera o azteca está siendo trasformada por las dinámicas de la globalización cultural, haciendo de esta tradición mexicana y ancestral, un eslabón de una amplia red New Age de alcances planetarios.

  6. The impact of ancestral heath management on soils and landscapes. A reconstruction based on paleoecological analyses of soil records in the middle and southeast Netherlands.

    Science.gov (United States)

    van Mourik, Jan; Doorenbosch, Marieke

    2016-04-01

    The evolution of heath lands during the Holocene has been registered in various soil records . Paleoecological analyses of these records enable to reconstruct the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation, in addition on the forest degradation accelerated due to cultural activities like forest grazing, wood cutting and shifting cultivation. Heather plants invaded on degraded forest soils and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the Late Neolithic, the Bronze Age and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age people probably continued with cattle grazing on the heaths and plaggic agriculture until the Early Middle Ages. After 1000 AD two events affected the heaths. At first deforestation for the sale of wood resulted in the first regional extension of sand drifting and heath degradation. After that the introduction of the deep stable economy and heath sods digging resulted in acceleration of the rise of plaggic horizons, severe heath degradation and the second extension of sand drifting. At the end of the 19th century the heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into 'new' arable fields and forests and due to deep ploughing most soil archives were destroyed. Since 1980 AD, the remaining relicts of the ancestral heaths are

  7. Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity

    Science.gov (United States)

    Spreadbury, Ian

    2012-01-01

    A novel hypothesis of obesity is suggested by consideration of diet-related inflammation and evolutionary medicine. The obese homeostatically guard their elevated weight. In rodent models of high-fat diet-induced obesity, leptin resistance is seen initially at vagal afferents, blunting the actions of satiety mediators, then centrally, with gastrointestinal bacterial-triggered SOCS3 signaling implicated. In humans, dietary fat and fructose elevate systemic lipopolysaccharide, while dietary glucose also strongly activates SOCS3 signaling. Crucially however, in humans, low-carbohydrate diets spontaneously decrease weight in a way that low-fat diets do not. Furthermore, nutrition transition patterns and the health of those still eating diverse ancestral diets with abundant food suggest that neither glycemic index, altered fat, nor carbohydrate intake can be intrinsic causes of obesity, and that human energy homeostasis functions well without Westernized foods containing flours, sugar, and refined fats. Due to being made up of cells, virtually all “ancestral foods” have markedly lower carbohydrate densities than flour- and sugar-containing foods, a property quite independent of glycemic index. Thus the “forgotten organ” of the gastrointestinal microbiota is a prime candidate to be influenced by evolutionarily unprecedented postprandial luminal carbohydrate concentrations. The present hypothesis suggests that in parallel with the bacterial effects of sugars on dental and periodontal health, acellular flours, sugars, and processed foods produce an inflammatory microbiota via the upper gastrointestinal tract, with fat able to effect a “double hit” by increasing systemic absorption of lipopolysaccharide. This model is consistent with a broad spectrum of reported dietary phenomena. A diet of grain-free whole foods with carbohydrate from cellular tubers, leaves, and fruits may produce a gastrointestinal microbiota consistent with our evolutionary condition

  8. Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.

    Science.gov (United States)

    Magee, Daniel; Suchard, Marc A; Scotch, Matthew

    2017-02-01

    Ancestral state reconstructions in Bayesian phylogeography of virus pandemics have been improved by utilizing a Bayesian stochastic search variable selection (BSSVS) framework. Recently, this framework has been extended to model the transition rate matrix between discrete states as a generalized linear model (GLM) of genetic, geographic, demographic, and environmental predictors of interest to the virus and incorporating BSSVS to estimate the posterior inclusion probabilities of each predictor. Although the latter appears to enhance the biological validity of ancestral state reconstruction, there has yet to be a comparison of phylogenies created by the two methods. In this paper, we compare these two methods, while also using a primitive method without BSSVS, and highlight the differences in phylogenies created by each. We test six coalescent priors and six random sequence samples of H3N2 influenza during the 2014-15 flu season in the U.S. We show that the GLMs yield significantly greater root state posterior probabilities than the two alternative methods under five of the six priors, and significantly greater Kullback-Leibler divergence values than the two alternative methods under all priors. Furthermore, the GLMs strongly implicate temperature and precipitation as driving forces of this flu season and nearly unanimously identified a single root state, which exhibits the most tropical climate during a typical flu season in the U.S. The GLM, however, appears to be highly susceptible to sampling bias compared with the other methods, which casts doubt on whether its reconstructions should be favored over those created by alternate methods. We report that a BSSVS approach with a Poisson prior demonstrates less bias toward sample size under certain conditions than the GLMs or primitive models, and believe that the connection between reconstruction method and sampling bias warrants further investigation.

  9. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species.

    Directory of Open Access Journals (Sweden)

    Michael B Walker

    Full Text Available Arrangements of genes along chromosomes are a product of evolutionary processes, and we can expect that preferable arrangements will prevail over the span of evolutionary time, often being reflected in the non-random clustering of structurally and/or functionally related genes. Such non-random arrangements can arise by two distinct evolutionary processes: duplications of DNA sequences that give rise to clusters of genes sharing both sequence similarity and common sequence features and the migration together of genes related by function, but not by common descent. To provide a background for distinguishing between the two, which is important for future efforts to unravel the evolutionary processes involved, we here provide a description of the extent to which ancestrally related genes are found in proximity.Towards this purpose, we combined information from five genomic datasets, InterPro, SCOP, PANTHER, Ensembl protein families, and Ensembl gene paralogs. The results are provided in publicly available datasets (http://cgd.jax.org/datasets/clustering/paraclustering.shtml describing the extent to which ancestrally related genes are in proximity beyond what is expected by chance (i.e. form paraclusters in the human and nine other vertebrate genomes, as well as the D. melanogaster, C. elegans, A. thaliana, and S. cerevisiae genomes. With the exception of Saccharomyces, paraclusters are a common feature of the genomes we examined. In the human genome they are estimated to include at least 22% of all protein coding genes. Paraclusters are far more prevalent among some gene families than others, are highly species or clade specific and can evolve rapidly, sometimes in response to environmental cues. Altogether, they account for a large portion of the functional clustering previously reported in several genomes.

  10. Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.

    Directory of Open Access Journals (Sweden)

    Daniel Magee

    2017-02-01

    Full Text Available Ancestral state reconstructions in Bayesian phylogeography of virus pandemics have been improved by utilizing a Bayesian stochastic search variable selection (BSSVS framework. Recently, this framework has been extended to model the transition rate matrix between discrete states as a generalized linear model (GLM of genetic, geographic, demographic, and environmental predictors of interest to the virus and incorporating BSSVS to estimate the posterior inclusion probabilities of each predictor. Although the latter appears to enhance the biological validity of ancestral state reconstruction, there has yet to be a comparison of phylogenies created by the two methods. In this paper, we compare these two methods, while also using a primitive method without BSSVS, and highlight the differences in phylogenies created by each. We test six coalescent priors and six random sequence samples of H3N2 influenza during the 2014-15 flu season in the U.S. We show that the GLMs yield significantly greater root state posterior probabilities than the two alternative methods under five of the six priors, and significantly greater Kullback-Leibler divergence values than the two alternative methods under all priors. Furthermore, the GLMs strongly implicate temperature and precipitation as driving forces of this flu season and nearly unanimously identified a single root state, which exhibits the most tropical climate during a typical flu season in the U.S. The GLM, however, appears to be highly susceptible to sampling bias compared with the other methods, which casts doubt on whether its reconstructions should be favored over those created by alternate methods. We report that a BSSVS approach with a Poisson prior demonstrates less bias toward sample size under certain conditions than the GLMs or primitive models, and believe that the connection between reconstruction method and sampling bias warrants further investigation.

  11. Estudio de Recursos Humanos del Sector Salud en Colombia.

    Directory of Open Access Journals (Sweden)

    Gustavo Malagón Londoño

    1997-12-01

    variables de interés.

    El marco legal vigente en la actualidad para las profesiones de la salud, parte desde el año de 1914, y es de tener en cuenta que muchas leyes reglamentarias de profesiones, tales como las de medicina y odontología datan de 1962.

    Esto trae como consecuencia, que estos marcos legales no se encuentren actualizados a los nuevos esquemas de prestación de servicios planteados y que la norma como tal no pueda ser aplicada en el momento que se requiere.

    Colombia posee una gran tradición en el estudio de sus recursos humanos del sector salud, pero los mismos no han sido utilizados con el impacto que se esperaría. Últimamente el proceso se ha abandonado y no se lo ha incluido dentro de un esquema serio de planeación.

    Hace mucho tiempo se inició el proceso de reglamentación y estudio, siendo posiblemente el más serio y profundo el nevado a cabo entre los años de 1964 y 1967 denominado Estudio de Recursos Humanos para la Salud y la Educación Médica, cuyos resultados fueron expuestos a nivel mundial y colocaron a Colombia a la vanguardia en este tipo de trabajos.

    Este estudio recolectó información con respecto a morbimortalidad, recursos físicos, financieros, cobertura y concentración de servicios médico-asistenciales. En el área de recursos humanos investigó tópicos relativos a la formación y utilización del recurso dentro de los cuales se destacan los siguientes aspectos: mala distribución geográfica, insatisfacción en el trabajo, inadecuación entre tareas asignadas y su formación, subutilización por carencia de personal auxiliar y alto nivel de práctica privada.

    Así mismo estudios correspondientes a profesiones específicas se han adelantado desde 1970 siendo las áreas más exploradas, medicina, odontología, enfermería, nutrición y bacteriología.

    En el año de 1970 se inició el Inventario Nacional de Recursos Humanos para la Salud, tal como lo recomendó el estudio realizado entre

  12. Teleopio del Pueblo

    Directory of Open Access Journals (Sweden)

    Paul Little

    2015-01-01

    Full Text Available Temas trascendentes de este número son Historia del Nuevo Periodismo, Derecho Social a la información y La televisión: Teleopio del pueblo. Se agregan otros como la investigación en el trabajo popular, LA mujer rural , El audiovisual en el Ecuador y Cambios en la comunicación a raíz del NOMIC.

  13. Historia del Nuevo Periodismo

    Directory of Open Access Journals (Sweden)

    María Luisa Rodríguez

    2015-01-01

    Full Text Available Temas trascendentes de este número son Historia del Nuevo Periodismo, Derecho Social a la información y La televisión: Teleopio del pueblo. Se agregan otros como la investigación en el trabajo popular, LA mujer rural , El audiovisual en el Ecuador y Cambios en la comunicación a raíz del NOMIC.

  14. Carta del editor

    Directory of Open Access Journals (Sweden)

    Juan Braun

    2015-01-01

    Full Text Available Temas trascendentes de este número son Historia del Nuevo Periodismo, Derecho Social a la información y La televisión: Teleopio del pueblo. Se agregan otros como la investigación en el trabajo popular, LA mujer rural , El audiovisual en el Ecuador y Cambios en la comunicación a raíz del NOMIC.

  15. Psicodrama del duelo.

    OpenAIRE

    José Antonio Espina Barrio; Marisol Filgueira Bouza

    1997-01-01

    La pérdida de rituales agrava y alarga la reacción del duelo. Se define el Psicodrama Antropológico y su intervención en el proceso del duelo. El Psicodrama Focal del Duelo es una psicoterapia breve centrada en el proceso de Duelo. Se comentan varios casos y resultados. Se concluye con un programa sencillo para el duelo en Atención Primaria.

  16. Fractura triple del complejo suspensorio del hombro

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    Eraclio Delgado Rifá

    2015-06-01

    Full Text Available El complejo suspensorio del hombro es una estructura sumamente importante, compuesta por un anillo de huesos y tejidos blandos. Las lesiones aisladas de este complejo anatómico son frecuentes y no afectan su estabilidad. La interrupción doble conduce a la inestabilidad de esta estructura y usualmente requiere tratamiento quirúrgico. La triple interrupción, por su parte, es sumamente rara y es encontrada en casos de trauma de alta energía a menudo en asociación con otras lesiones. Se presenta una triple lesión del complejo suspensorio del hombro en un paciente de 46 años de edad, con una fractura de la glenoides, del acromion tipo III de Kuhn y de la coracoides tipo II de Ogawa. En este caso, la fractura del acromion fue tratada con fijación percutánea con alambres de Kirschner, por tener asociado lesiones de partes blandas que contraindicaron la reducción abierta. La fractura de la glenoides y de la apófisis coracoides fueron tratadas conservadoramente. Después de 6 meses de evolución, el paciente tuvo un resultado funcional aceptable, con una abducción de 90 grados, los 30 grados de rotación externa y 70 de rotación interna, además asintomático y consolidación de todas las fracturas. A pesar de ser catalogada de una lesión grave del cinturón escapular y estar asociada a otras lesiones se obtuvo un resultado satisfactorio al final del tratamiento.

  17. del queso edam

    Directory of Open Access Journals (Sweden)

    JUAN FELIPE OSORIO TOBÓN

    2005-01-01

    Full Text Available El comportamiento reológico y textural del queso Edam fue obtenido mediante pruebas de relajación, creep y análisis de perfil de textura (TPA. Los resultados mostraron que el queso es un material de naturaleza viscoelástica, donde los modelos generalizados de Kelvin y Maxwell resultaron ideales para predecir el comportamiento reológico del producto. Los parámetros texturales tales como la dureza, cohesividad, adhesividad y masticabilidad son dependientes del tiempo de maduración pero no la resortabilidad del producto.

  18. Riesgos laborales en trabajadores del sector informal del Cauca, Colombia

    OpenAIRE

    Augusto Muñoz-Caicedo; Pilar Mirely Chois-Lenis

    2014-01-01

    Antecedentes. Un estudio a nivel nacional permitió establecer los riesgos a los cuales estaban expuestos los trabajadores del sector informal del comercio. Sin embargo, no fue incluido el Departamento del Cauca. Objetivo. Describirlos riesgos laborales de las personas ocupadas en el sector informal del comercio, en cinco municipios del departamento del Cauca, durante el 2011. Materiales y métodos. Estudio descriptivo, transversal, desarrollado con 223 sujetos a quienes se les aplicó una encue...

  19. El efecto perverso del simulacro del consumo

    Directory of Open Access Journals (Sweden)

    Paulo De Tarso Riccordi

    2015-01-01

    Full Text Available Los domingos las Redes Globo y S.B.T. retienen entre el 60 y 70% de la audiencia nacional de Brasil. El autor resume la distribución de la pauta publicitaria entre los medios. Los marginados de la economía pueden acceder al consumo a través del simulacro televisivo o de la apropiación violenta. La televisión es uno de los componentes del proceso Deseo-Frustración-Revuelta, que forma parte de la historia urbana contemporánea de Brasil. El acceso casi mágico al producto publicitario, el simulacro del consumo que ofrecen los programas tipo "Silvio Santos" los múltiples sorteos y loterías oficiales y clandestinas, simultáneamente apaciguan y exaltan el deseo de consumir lo inaccesible.

  20. La luz del origen del universo

    Directory of Open Access Journals (Sweden)

    Casas, Alberto

    2015-10-01

    Full Text Available Penzias and Wilson discovered the cosmic microwave background, a luminous echo of the Big Bang, in 1965. The amount of information encoded in this relic of the early universe is truly extraordinary. At present, the most precise data about the origin and structure of the universe comes from the study of this primordial light, the full potential of which has yet to be explored.En 1965 se descubrió el fondo de radiación de microondas, un eco luminoso de la Gran Explosión (Big Bang. La cantidad de información contenida en esta reliquia del universo primitivo es verdaderamente extraordinaria. En la actualidad los datos más precisos sobre el origen y estructura del universo provienen del estudio de esta luz primigenia, que aún no ha sido explorada en todo su potencial.

  1. Displasias del seno

    Directory of Open Access Journals (Sweden)

    Ernesto Andrade Valderrama

    1971-04-01

    Full Text Available En general, las Displasias no se presentan antes de la iniciación del estímulo Gonadal y tienden a desaparecer con el climaterio. Se definen entonces como las afecciones benignas del Seno, de origen endocrino.

  2. Archivo del Duelo

    OpenAIRE

    Ferrera, Tamara

    2010-01-01

    Photos taken from the Archive of Mourning following the March 11 terrorist attacks El Archivo del Duelo. Creación de un archivo etnográfico de los Atentados del 11 de marzo en Madrid. Ministerio de Educación y Ciencia HUM2005-03490.

  3. Il dono del racconto

    DEFF Research Database (Denmark)

    Polito, Paola

    1998-01-01

    'importanza assunta nel romanzo dal piano dell'enunciazione come luogo privilegiato di manifestazione del soggetto quale esperiente una vicenda di maturazione. Il protagonista, qui, non solo si rappresenta in ciò che enuncia e riferisce, ma anche e soprattutto si svela nelle modalità specifiche del proprio discorso...

  4. Cartas del Observatorio N° 2

    OpenAIRE

    Castell, Edmon; Torres Carreño, Guillermo Andrés; Diazgranados, Carlos Nicolás; Mora, Yaneth

    2011-01-01

    El boletín del OAN, "Cartas del Observatorio", es una pieza de comunicación desarrollada entre el Observatorio Astronómico Nacional (OAN) y el Área de Comunicación del SPM. El boletín periódico forma parte de los aportes del SPM al Bicentenario de la Independencia (2010) de Colombia. Este segundo número de Cartas del Observatorio, describe la construcción del edificio, el plan museológico por parte del SPM, una de las piezas importante del OAN, la publicación de la infografía y la partici...

  5. El swing del soneo del sonero mayor. La improvisación salsera y la memoria del ritmo en el caribe y su diáspora

    Directory of Open Access Journals (Sweden)

    Ángel G. Quintero Rivera

    2008-01-01

    Full Text Available La ponencia examina el arte de la improvisación vocal (o soneo de Ismael Rivera (Maelo, reconocido como “ el Sonero Mayor ” de la música “tropical”. Analiza cómo mucha de la riqueza del soneo de Maelo, más que en la retahíla de palabras que improvisa, se encuentra en el swing de su manera de hilvanar esas improvisaciones, desarrollando modulaciones rítmicas a l a manera del bailador en diálogo con el tambor repicador en la memoria caribeña de sus primeras músicas emergiendo de su herencia cultural africana. Estas primeras músicas partían de una realidad, en medida considerable, “despalabrada”, terrible carimbo de la esclavitud. El análisis del soneo de Maelo es muy importante para comprender la salsa, un movimiento musical liderado por la diáspora caribeña en Nueva York que alcanzó una enorme difusión internacional. Su trayectoria como cantante se ubica en los añ os de transición entre la música afrocaribeña tradicional y las nuevas sonoridades que asume esa música en la expresión salsera. Fue, de hecho, en Nueva York a donde emigró en 1967 y como parte del boom salsero que se iniciaba entonces, que su soneo alca nzó su máximo desarrollo artístico, pero incorporando siempre la memoria ancestral y el hondo sentido comunal de sus inicios sobre todo con el Combo de Cortijo en los barrios populares del Puerto Rico de los años cincuenta. La manera como Maelo “apalabró” su swing le imprimió una gran riqueza libertaria al soneo salsero convirtiéndolo en uno de los nuevos elementos centrales de dicha sonoridad diaspórica.

  6. La crisi del diritto del lavoro

    Directory of Open Access Journals (Sweden)

    Alessandro Garilli

    2012-01-01

    Full Text Available Riassunto - L’Autore ripercorre in chiave critica l’evoluzione delle politiche legislative in materia di lavoro, alla luce dell’attuale fase di crisi economico finanziaria. Nell’esaminare i principali interventi normativi attuati da inizio secolo, l’Autore mette in evidenza le scelte di metodo e gli elementi di continuità che accomunano i vari provvedimenti, individuandoli nell’affannosa ricerca del punto di equilibrio tra flessibilità e garantismo. La riflessione si chiude con alcuni interrogativi sulle ultime linee di riforma del mercato del lavoro e con l’auspicio che, anche al cospetto delle imprescindibili ragioni dell’economia, il diritto del lavoro possa continuare a svolgere il proprio tradizionale ruolo di disciplina di tutela della persona.   Abstract - The author analyzes, with a critically oriented approach, the development of the employment law, in the light of the current economic and financial crisis. In examining the main regulatory measures implemented since the beginning of the century, the author highlights the methodological choices and the elements of continuity that unite the various measures, focusing them in a hard research of a point of balance between flexibility and security. The discussion concludes with some questions about the last lines of the reform of the labor market and with the hope that, even in the face of compelling reasons of economy, labor law can continue to play its traditional role of governing the protection of person.

  7. Elementos del sistema electoral del Congreso Mexicano

    Directory of Open Access Journals (Sweden)

    Aldo Medina García

    2013-08-01

    Full Text Available El presente artículo es un estudio de los componentes del sistema electoral, diseñado por el legislador mexicano para integrar al parlamento federal. Estudio desarrollado a sabiendas de la importancia que reviste el sistema electoral como un medio que permite a los ciudadanos convertir su voto expresado en las urnas en escaños a favor de determinado candidato o partido. En dicho análisis tomamos en cuenta la evolución constitucional del sistema electoral mexicano, la participación de las fuerzas minoritarias en la integración del Senado y de la Cámara de Diputados, la división que se hace del territorio en circunscripciones electorales, la barrera electoral que se fija a los partidos políticos para acceder a la representación en el Parlamento, la fórmula de asignación que se aplica a la votación obtenida, para finalmente concluir que el sistema electoral mexicano es esencialmente mayoritario aun cuando se vista de proporcional.

  8. OBJETIVO DEL DESARROLLO DEL MILENIO 7

    Directory of Open Access Journals (Sweden)

    Margarita M. Pérez O.

    2013-10-01

    Full Text Available Los Objetivos de Desarrollo del Milenio, también conocidos como los Objetivos del Milenio, constituyeron las metas finales que aprobaron los dirigentes mundiales, 189 jefes de estado y de gobierno en la Cumbre del Milenio de las Naciones Unidas celebrada en Nueva York en el año 2000, en la cual los Estados miembros de la organización reafirmaron su compromiso de luchar por un mundo en el que el desarrollo sostenible y la eliminación de la pobreza tuvieran máxima prioridad1 . En la cumbre se definió la Declaración del Milenio, la cual detalla los objetivos, principios, valores, metas y acciones para erradicar la pobreza Mundial hacia el año 2015, todos ellos ratificados con alto interés y acción estratégica de carácter global, como marco para la medición de los progresos en materia de desarrollo.

  9. The impact of ancestral heath management on soils and landscapes: a reconstruction based on paleoecological analyses of soil records in the central and southeastern Netherlands

    Science.gov (United States)

    Doorenbosch, Marieke; van Mourik, Jan M.

    2016-07-01

    The evolution of heathlands during the Holocene has been registered in various soil records. Paleoecological analyses of these records enable reconstruction of the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation; in addition on that, the forest degradation accelerated due to cultural activities like forest grazing, wood cutting, and shifting cultivation. Heather plants invaded degraded forest soils, and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences, and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the late Neolithic, the Bronze Age, and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age, people probably continued with cattle grazing on the heaths and plaggic agriculture until the early Middle Ages. Severe forest degradation by the production of charcoal for melting iron during the Iron Age till the 6th-7th century and during the 11th-13th century for the trade of wood resulted in extensive sand drifting, a threat to the valuable heaths. The introduction of the deep, stable economy and heath sods digging in the course of the 18th century resulted in acceleration of the rise of plaggic horizons, severe heath degradation, and again extension of sand drifting. At the end of the 19th century heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into "new" arable fields and forests, and due to deep ploughing

  10. Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity

    Directory of Open Access Journals (Sweden)

    Spreadbury I

    2012-07-01

    Full Text Available Ian SpreadburyGastrointestinal Diseases Research Unit, Queen's University, Kingston, Ontario, CanadaAbstract: A novel hypothesis of obesity is suggested by consideration of diet-related inflammation and evolutionary medicine. The obese homeostatically guard their elevated weight. In rodent models of high-fat diet-induced obesity, leptin resistance is seen initially at vagal afferents, blunting the actions of satiety mediators, then centrally, with gastrointestinal bacterial-triggered SOCS3 signaling implicated. In humans, dietary fat and fructose elevate systemic lipopolysaccharide, while dietary glucose also strongly activates SOCS3 signaling. Crucially however, in humans, low-carbohydrate diets spontaneously decrease weight in a way that low-fat diets do not. Furthermore, nutrition transition patterns and the health of those still eating diverse ancestral diets with abundant food suggest that neither glycemic index, altered fat, nor carbohydrate intake can be intrinsic causes of obesity, and that human energy homeostasis functions well without Westernized foods containing flours, sugar, and refined fats. Due to being made up of cells, virtually all "ancestral foods" have markedly lower carbohydrate densities than flour- and sugar-containing foods, a property quite independent of glycemic index. Thus the "forgotten organ" of the gastrointestinal microbiota is a prime candidate to be influenced by evolutionarily unprecedented postprandial luminal carbohydrate concentrations. The present hypothesis suggests that in parallel with the bacterial effects of sugars on dental and periodontal health, acellular flours, sugars, and processed foods produce an inflammatory microbiota via the upper gastrointestinal tract, with fat able to effect a "double hit" by increasing systemic absorption of lipopolysaccharide. This model is consistent with a broad spectrum of reported dietary phenomena. A diet of grain-free whole foods with carbohydrate from cellular

  11. La Danza del Diablo: Estéticas-rituales-comunitarias en la Mixteca Oaxaqueña

    Directory of Open Access Journals (Sweden)

    David Terrazas Tello

    2014-07-01

    Full Text Available La imagen del diablo que trajeron los evangelizado- res, junto con la espada del conquistador, fue el resulta- do de un largo proceso socio-histórico-político-cultural. La espada y la cruz necesitaban herramientas de control ideológico a través del miedo, la culpa, la amenaza del infierno. Esta imagen fue utilizada por las órdenes mo- násticas para emprender la lucha contra la idolatría, cuya premisa fue la total extirpación del “paganismo”; usan- do como estrategia la satanización de los dioses del Me- soamericanos. El Mal tiene una de tantas encarnaciones dentro del contexto festivo actual en el calendario de la mixteca oaxaqueña, a través de la puesta en escena de la Danza de Diablos. Para el análisis de esta danza se pro- pone la categoría transdisciplinaria de estéticas-ritua- les-comunitarias, la cual muestra como se reproduce lo simbólico en la memoria ancestral de la cultura, y como la figura del mal está presente en las cosmovisiones mix- tecas contemporáneas. AbstractThe image of the devil that brought the evangelizers, along with the sword of the conqueror, was the result of a long process socio-historical-political-cultural. The sword and the cross needed tools of ideological control through fear, the guilt, the threat of hell. This image was used by the monastic orders to take up the fight against the idolatry, whose premise was the complete removal of the “paganism”; using as strategy the demonization of the gods of the Mesoamericans. The evil is one of many incar- nations within the current context in the festive calendar of the Mixteca oaxacan, through the implementation of the dance scene of Devils. For the analysis of this dance it is proposed that the transdisciplinary category of aes- thetic-ritual-community, which shows how symbolic it is reproduced in the ancestral memory of the culture, and as the figure of the evil is present in the Mixtec contem- porary worldviews. 

  12. La resignificación cultural mediante la acción colectiva frente a la expansión urbana. Un estudio diagnóstico sobre la problemática del territorio del cabildo indígena muisca-bosa periodo 1999-2013

    OpenAIRE

    Fernández Castillo, Mauricio Alejandro

    2014-01-01

    El propósito del presente estudio diagnóstico, es el de analizar el proceso de reconstrucción de la identidad del Pueblo Indígena Muisca de la Localidad de Bosa, en la ciudad de Bogotá D.C desde el año de 1999 hasta el 2013. Este diagnóstico tiene como punto de partida, el análisis de la pérdida del territorio ancestral por parte de esta comunidad de indígenas urbanos, debido a los proceso de expansión y de urbanización legales e ilegales que tienen lugar en el territorio. Con ...

  13. Perspectivas del turismo rural

    OpenAIRE

    Szmulewicz Espinosa, Pablo

    1998-01-01

    El documento plantea las tendencias y modalidades actuales del turismo del turismo rural y las condiciones para su desarrollo en Chile. Propone la Acción por un turismo rural integrado y sustentable y analiza la situación de oferta y demanda actual para identificar los desafíos tácticos del turismo rural y las orientaciones estratégicas que conformen una política concreta de fomento para convocatoria y participación de los actores interesados. Fil: Szmulewicz Espinosa, Pablo. Universidad A...

  14. Los muertos del Floreanismo

    OpenAIRE

    Enrique Ayala Mora

    2008-01-01

    El artículo analiza el crimen político durante las primeras décadas de vida de la República del Ecuador. Específicamente centra su estudio en el período dominado por la figura de Juan José Flores, primer presidente del Ecuador. La inestabilidad política, la precariedad de las alianzas entre las élites regionales, la crisis económica generada por las guerras de Independencia, las conspiraciones y la violencia que caracterizaron al período de surgimiento de las repúblicas andinas hicieron del c...

  15. Fractura del ahorcado

    OpenAIRE

    Esteban Roig Fabré; Jorge Lerma; Juan Carlos Correa Barrios; Ivón González Varcárcel

    2003-01-01

    Con el nombre de "fractura del ahorcado" se conocen 2 tipos de lesiones del axis de igual apariencia radiológica, de las cuales la más frecuente es la espondilolistesis traumática del axis. Estas lesiones son afecciones relativamente infrecuentes, que crean problemas de manejo a ortopédicos y neurocirujanos por su comportamiento biomecánico particular. Se hace una revisión de la clasificación y fisiopatología de la lesión, y se describen los métodos actuales de diagnóstico por imagen y de tra...

  16. Tratamiento del pie equino

    OpenAIRE

    Robles, Fernanda

    2012-01-01

    El pie equino varo es una patología frecuente en los pacientes con Encefalopatía crónica no evolutiva (ECNE).Se observó que existe una mayor frecuencia en el sexo masculino. Se realizó un estudio descriptivo, comparativo y secundario, durante el periodo de septiembre del 2006 a septiembre del 2011, con un total de 125 pacientes con Ecne, de los cuales se encontraron 101 con pie equino varo congénito. Objetivo: observar los resultados obtenidos en la rehabilitación del pie equino, en niños de ...

  17. La muerte del mito

    OpenAIRE

    Sánchez-Biosca, Vicente

    1990-01-01

    Habría de ser de nuevo John Ford quien sentenciará la defunción del western en cuanto mito, su imposibilidad de construirse en el vacío de la historia. Y habría de ser en uno de los más lúcidos films de la historia del cine: The Man who shot Liberty Valance (El hombre que mató a Liberty Valance, 1962). Todo en este film posee un reverso: un viaje en ferrocarril abre paso al pueblecito de Shinbone. Pero, en el interior del relato, otro emprendido por el antes pionero y ho...

  18. Del Pasadismo al Futurismo

    OpenAIRE

    Agudo-Martínez, M. J.

    2003-01-01

    Uno de los habituales prejuicios a la hora de abordar el análisis del movimiento futurista, al igual que sucede con el constructivismo, es la consideración del contexto político en el que se desarrollaron ambas vanguardias. Sin embargo, y dejando a un lado un enfoque del arte con finalidad política de signo diverso, habría que insistir en el hecho de que posiblemente sean tanto el futurismo italiano como el constructivismo ruso, los movimientos que con mayor entusiasmo se manifestaron, en un ...

  19. El asunto del Juno Trader

    OpenAIRE

    Bou Franch, Valentín

    2005-01-01

    En este trabajo se analiza la Sentencia del Tribunal Internacional de Derecho del Mar en el asunto del Juno Trader. El trabajo centra sobre todo su atención en el análisis del procedimiento de pronta liberación de buques, así como en lo que hay que entender como 'fianza razonable' en estos casos.

  20. Genetic diversity of Mycobacterium tuberculosis from Pará, Brazil, reveals a higher frequency of ancestral strains than previously reported in South America.

    Science.gov (United States)

    Conceição, Emilyn Costa; Rastogi, Nalin; Couvin, David; Lopes, Maria Luíza; Furlaneto, Ismari Perini; Gomes, Harrison Magdinier; Vasconcellos, Sidra Ezídio Gonçalves; Suffys, Philip Noel; Schneider, Maria Paula Cruz; de Sousa, Maísa Silva; Sola, Christophe; de Paula Souza E Guimarães, Ricardo José; Duarte, Rafael Silva; Batista Lima, Karla Valéria

    2017-12-01

    There is only scarce information available on genotypic diversity of the Mycobacterium tuberculosis complex (MTBC) clinical isolates circulating in the Northern part of Brazil, a relatively neglected region regarding research on tuberculosis. We therefore characterized 980 MTBC clinical isolates from the state of Pará, by spoligotyping and data was compared with patterns from around the world, besides analyzing drug susceptibility, and collecting sociodemographic data. We also performed 24 loci MIRU-VNTR typing to evaluate phylogenetic inferences among the East-African-Indian (EAI) lineage strains. The Geographic Information System analyses were performed to generate a descriptive visualization of MTBC strain distribution in the region. A total of 249 different spoligopatterns primarily belonging to evolutionary recent Euro-American lineages, as well as Central-Asian, Manu and ancestral EAI lineages, were identified, in addition to strains with reportedly unknown lineage signatures. The most frequent lineages were Latin American Mediterranean, T and Haarlem. Interestingly, EAI lineage strains were found in a significantly higher proportion in comparison with previous studies from South America. Regarding EAI lineage, the absence of spacers 4-9 and 23-24 co-related to 24 loci MIRU-VNTRs may suggest a close evolutionary relationship between such strains in Pará and those prevalent in Mozambique, which might have contributed to the genetic diversity of MTBC strains in this region. Copyright © 2017. Published by Elsevier B.V.

  1. Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis

    Directory of Open Access Journals (Sweden)

    Pearson Gareth A

    2011-01-01

    Full Text Available Abstract Background Hybridization or divergence between sympatric sister species provides a natural laboratory to study speciation processes. The shared polymorphism in sister species may either be ancestral or derive from hybridization, and the accuracy of analytic methods used thus far to derive convincing evidence for the occurrence of present day hybridization is largely debated. Results Here we propose the application of network analysis to test for the occurrence of present day hybridization between the two species of brown algae Fucus spiralis and F. vesiculosus. Individual-centered networks were analyzed on the basis of microsatellite genotypes from North Africa to the Pacific American coast, through the North Atlantic. Two genetic distances integrating different time steps were used, the Rozenfeld (RD; based on alleles divergence and the Shared Allele (SAD; based on alleles identity distances. A diagnostic level of genotype divergence and clustering of individuals from each species was obtained through RD while screening for exchanges through putative hybridization was facilitated using SAD. Intermediate individuals linking both clusters on the RD network were those sampled at the limits of the sympatric zone in Northwest Iberia. Conclusion These results suggesting rare hybridization were confirmed by simulation of hybrids and F2 with directed backcrosses. Comparison with the Bayesian method STRUCTURE confirmed the usefulness of both approaches and emphasized the reliability of network analysis to unravel and study hybridization

  2. Ancestral knowledge about the use of flora and fauna in the indigenous community Tikuna from Cushillo Cocha, border with Peru-Colombia-Brazil

    Directory of Open Access Journals (Sweden)

    Elsa Rengifo-Salgado

    2017-04-01

    Full Text Available In the present study, ancestral indigenous knowledge (ethno-knowledge of the indigenous community “Tikuna from Cushillo Cocha” is reported. The community is located in the province of Ramón Castilla, northeast of Loreto Region, Peru. Data was collected through participatory workshops, interviews and biological expeditions in order to collect plant species, observe animals and identify them in situ, always accompanied by local people considered them with experience and knowledge of their territory. A total of 247 species of flora and fauna were registered. In ethnobotany, 101 species were identified, grouped in seven categories of assigned uses by locals, being food and medicinal categories the most representative. For the case of ethnozoology, 146 species were identified, which are used in six categories, being food and pet categories the most relevant. It was evidenced that the forest is the main source for food, medical supplies, handicrafts, animals as pets to be sold and plants as ornamental, all these with important acceptance by the indigenous population.

  3. TM4SF20 Ancestral Deletion and Susceptibility to a Pediatric Disorder of Early Language Delay and Cerebral White Matter Hyperintensities

    Science.gov (United States)

    Wiszniewski, Wojciech; Hunter, Jill V.; Hanchard, Neil A.; Willer, Jason R.; Shaw, Chad; Tian, Qi; Illner, Anna; Wang, Xueqing; Cheung, Sau W.; Patel, Ankita; Campbell, Ian M.; Gelowani, Violet; Hixson, Patricia; Ester, Audrey R.; Azamian, Mahshid S.; Potocki, Lorraine; Zapata, Gladys; Hernandez, Patricia P.; Ramocki, Melissa B.; Santos-Cortez, Regie L.P.; Wang, Gao; York, Michele K.; Justice, Monica J.; Chu, Zili D.; Bader, Patricia I.; Omo-Griffith, Lisa; Madduri, Nirupama S.; Scharer, Gunter; Crawford, Heather P.; Yanatatsaneejit, Pattamawadee; Eifert, Anna; Kerr, Jeffery; Bacino, Carlos A.; Franklin, Adiaha I.A.; Goin-Kochel, Robin P.; Simpson, Gayle; Immken, Ladonna; Haque, Muhammad E.; Stosic, Marija; Williams, Misti D.; Morgan, Thomas M.; Pruthi, Sumit; Omary, Reed; Boyadjiev, Simeon A.; Win, Kay K.; Thida, Aye; Hurles, Matthew; Hibberd, Martin Lloyd; Khor, Chiea Chuen; Van Vinh Chau, Nguyen; Gallagher, Thomas E.; Mutirangura, Apiwat; Stankiewicz, Pawel; Beaudet, Arthur L.; Maletic-Savatic, Mirjana; Rosenfeld, Jill A.; Shaffer, Lisa G.; Davis, Erica E.; Belmont, John W.; Dunstan, Sarah; Simmons, Cameron P.; Bonnen, Penelope E.; Leal, Suzanne M.; Katsanis, Nicholas; Lupski, James R.; Lalani, Seema R.

    2013-01-01

    White matter hyperintensities (WMHs) of the brain are important markers of aging and small-vessel disease. WMHs are rare in healthy children and, when observed, often occur with comorbid neuroinflammatory or vasculitic processes. Here, we describe a complex 4 kb deletion in 2q36.3 that segregates with early childhood communication disorders and WMH in 15 unrelated families predominantly from Southeast Asia. The premature brain aging phenotype with punctate and multifocal WMHs was observed in ∼70% of young carrier parents who underwent brain MRI. The complex deletion removes the penultimate exon 3 of TM4SF20, a gene encoding a transmembrane protein of unknown function. Minigene analysis showed that the resultant net loss of an exon introduces a premature stop codon, which, in turn, leads to the generation of a stable protein that fails to target to the plasma membrane and accumulates in the cytoplasm. Finally, we report this deletion to be enriched in individuals of Vietnamese Kinh descent, with an allele frequency of about 1%, embedded in an ancestral haplotype. Our data point to a constellation of early language delay and WMH phenotypes, driven by a likely toxic mechanism of TM4SF20 truncation, and highlight the importance of understanding and managing population-specific low-frequency pathogenic alleles. PMID:23810381

  4. La escritura del Yo

    Directory of Open Access Journals (Sweden)

    Patricio Landaeta Mardones

    2013-11-01

    Full Text Available Si la creación de una imagen fidedigna del mundo fue la condición de la conquista cognitiva y económica de la tierra, las imágenes mediáticas circulan hoy en día a la manera de un montaje que organiza los sujetos como elementos de un territorio. En esta presentación abordaremos el cruce entre estos dos hechos, entre la escritura del mundo y la de los sujetos, a partir de la idea de Fabulación para mostrar otra escritura del mundo y del yo, leyendo textos e imágenes de la Primera buena Corónica y Buen Gobierno de Felipe Guaman Poma de Ayala.

  5. Las identidades del dinero

    Directory of Open Access Journals (Sweden)

    CELSO SÁNCHEZ CAPDEQUÍ

    2005-01-01

    Full Text Available A lo largo del trabajo se ha pretendido desvelar los momentos sociales y simbólicos que constituyen la extensa biografía del dinero. En ausencia de una racionalidad económica diferenciada, el dinero nace, de forma no deliberada, en el templo bajo la atmósfera sacrificial, comparece en la modernidad como medio técnico que representa la esperanza del individuo propietario en la bonhomía del mercado como elemento pacificador de las costumbres sociales, y arriba a nuestra posmodernidad como fin en sí mismo que, convertido en bit desmaterializado, aspira a no dejar de circular por el nuevo espacio virtual.

  6. Carta del Editor

    OpenAIRE

    Luis Eladio Proaño

    2015-01-01

    El artículo de fondo busca esclarecer una posible manipulación de la información por parte del gobierno de Aznar sobre el ataque terrorista del 11 de marzo en Madrid, cuál fue la participación de los partidos políticos y cual la reacción del pueblo español. En otro tema se resalta la actividad cumplida por el CIESPAL en sus 45 años de labor. El tema de la lectura y el libro es abordado ante la aparición del e-book. Se habla sobre el ciberperiodismo, la prensa gratuita, las nuevas modalidades ...

  7. Carta del Editor

    Directory of Open Access Journals (Sweden)

    Luis Eladio Proaño

    2015-01-01

    Full Text Available La millonaria contratación del futbolista David Beckham, un fenómeno del mercado, ha provocado cuestionamientos a los que se busca respuesta. Es tema de análisis el por qué el betseller "Harry Potter" ha causado tanta conmoción en la opinión pública. Respecto al periodista cibernético, se señalan los contornos del presente y atisban las posibilidades del futuro de esta nueva profesión. El tratamiento de los mitos de la prensa, los temores de la Ley mordaza venezolana y la brutalidad de los video juegos e Internet son temas de enorme interés. Se comenta las pocas veces que la prensa reflexiona sobre la comunicación corporal y la anorexia.

  8. Los muertos del Floreanismo

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    Enrique Ayala Mora

    2008-06-01

    Full Text Available El artículo analiza el crimen político durante las primeras décadas de vida de la República del Ecuador. Específicamente centra su estudio en el período dominado por la figura de Juan José Flores, primer presidente del Ecuador. La inestabilidad política, la precariedad de las alianzas entre las élites regionales, la crisis económica generada por las guerras de Independencia, las conspiraciones y la violencia que caracterizaron al período de surgimiento de las repúblicas andinas hicieron del crimen político un “vicio de nacimiento”. El asesinato del general Antonio José de Sucre, la muerte de los miembros de la sociedad El Quiteño Libre, el homicidio de Juan Otamendi, entre otros, hicieron patente esta característica.

  9. Diario del General Santander

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    Guillermo Hernández De Alba

    1963-06-01

    Full Text Available El doctor Rafael Martínez Briceño, eminente médico legista y abogado con notables títulos en la cultura colombiana como humanista y bibliófilo de rara erudición, posee una de las bibliotecas privadas más ricas del país, donde están representados en ediciones príncipes o rarísimas, los ingenios del Renacimiento y de la cultura universal del Barroco, así como las más raras ediciones impresas en hispanoamérica a partir del siglo XVI, especialmente relacionadas con las letras neogranadinas y colombianas.

  10. Análisis, valoración y optimización del programa juventud y empleo, aplicado en la república dominicana a jóvenes en situación de riesgo psicosocial. un diseño investigación-acción basado en el modelo de kirkpatrick

    OpenAIRE

    Díaz García, Leonardo Antonio

    2015-01-01

    Hoy la humanidad vive en un mundo de ricos y pobres, con una gran desigualdad en la distribución del ingreso mundial, que favorece ampliamente a los habitantes de los países ricos. La principal injusticia que vive hoy la humanidad es la desigualdad económica entre países, y al interior de ellos. En el caso de los países del sur de forma ancestral ha anidado la pobreza en amplios segmentos de la población. La pobreza bloquea y dificulta la satisfacción adecuada de las necesidades de l...

  11. El financiamiento del terrorismo

    OpenAIRE

    Díaz Molina, Jenory

    2008-01-01

    El sector financiero aplica actualmente medidas preventivas contra el delito de lavado de dinero. Hoy día es necesario ampliar esos controles para abarcar también el delito de financiamiento del terro - rismo, tomando en consideración las similitudes y diferencias entre ambos. Costa Rica recientemente tipificó el delito de financiamiento del te rrorismo con el fin de cumplir con compromisos internacionales

  12. Responsabilidad profesional del fisioterapeuta

    OpenAIRE

    Fernández Martínez, Silvia

    2011-01-01

    Los objetivos de esta tesis son: Conocer el origen histórico y legislativo de la Fisioterapia. Analizar las definiciones que hoy existen de la Fisioterapia, y aportar una nueva que refleje la profesión actual. Establecer un marco de derechos y obligaciones del Fisioterapeuta, como profesional sanitario. Y por último, determinar la Responsabilidad Profesional del Fisioterapeuta, en el ámbito Civil, Penal y de la Administración Pública.

  13. Desarrollo Integral del Preescolar

    OpenAIRE

    Montes Hasslocher, Patricia Isabel

    2013-01-01

    Los niño cuyas edades oscilan entre los 2 y los 6 años de edad reciben el nombre de preescolares (etapa también conoconida como infancia temprana). Esta etapa es supremamente importante en la vida porque es aquí donde se sientan las bases del desarrollo posterior. Los adultos cuidadores deben acompañarlo afectuosa y permanentemente para logar su desarrollo integral, y estimularla adquisición de las metas del desarrollo

  14. Carta del Editor

    Directory of Open Access Journals (Sweden)

    Luis Eladio Proaño

    2015-01-01

    Full Text Available El artículo de fondo busca esclarecer una posible manipulación de la información por parte del gobierno de Aznar sobre el ataque terrorista del 11 de marzo en Madrid, cuál fue la participación de los partidos políticos y cual la reacción del pueblo español. En otro tema se resalta la actividad cumplida por el CIESPAL en sus 45 años de labor. El tema de la lectura y el libro es abordado ante la aparición del e-book. Se habla sobre el ciberperiodismo, la prensa gratuita, las nuevas modalidades de programación en la radio dirigida a todos los públicos. En el cine se analiza "La pasión de Cristo" y el lauro que el festival de Cannnes otorgó a Fahrenheit 9/11. Desde la óptica de la informática agrega dos temas de actualidad: Los derechos digitales y el control del ciberespacio, más la penetración del Internet.

  15. el Valle del Cauca

    Directory of Open Access Journals (Sweden)

    Carlos Humberto Ortiz

    2007-01-01

    Full Text Available Este artículo se enfoca en la identi- ficación de aquellos factores estructurales que explican la pérdida de dinamismo económico de largo plazo en Colombia y, en particular, en el Valle del Cauca. Se examina la competitividad del Valle en relación con Colombia y con el resto del mundo. Se cuestiona la insistencia en una estrategia exportadora como dinamizadora del desarrollo económico. Se identifica que una gran parte de la población está excluida de los beneficios del desarrollo económico. Para construir un modelo de desarrollo que incluya a esta población se recomienda recuperar la senda de la industrialización, invertir en el capital humano (educación de alta calidad, salud, salubridad y nutrición, e invertir en infraestructura. La participación del Estado en estas inversiones sociales es necesaria para disminuir la desigualdad y aumentar el crecimiento económico.

  16. Carta del Editor

    Directory of Open Access Journals (Sweden)

    Luis Eladio Proaño

    2015-01-01

    Full Text Available Explica las causas del fenómeno de los Talk Shows que han despertado sentimientos contradictorios de rechazo y fascinación por su alto grado de agresividad y el poco respeto a la intimidad humana. Otro tema es el relacionado a que ilusoriamente se creyó que tras la caída del Muro de Berlín, había renacido en los países de Europa Oriental, la libertad de prensa, el articulista da su versión. En el séptimo arte Europa Occidental irrumpe con una nueva corriente, provocativa y audaz el artículo se centra en la crítica a la obra de Von Trier: el niño terrible del cine alemán. En un escenario de corrupción, más la venalidad del fujimorismo y la presencia de Vladimiro Montesinos, es elegido Alejandro Toledo, el artículo destaca el papel de los medios que en gran parte fueron los que trazaron la agenda y determinaron el resultado final de las elecciones en el Perú. Se cuenta la historia de la BBC de Londres y se cierra con un artículo que destaca la importancia del Word del Microsoft.

  17. Gerencia del cuidado-gerencia del servicio

    Directory of Open Access Journals (Sweden)

    Marta Palmet Jiménez

    2016-01-01

    Full Text Available La gerencia de este siglo debe estar plenamente identificada con la administración para planear, organizar, decidir y obtener resultados definidos, evaluados y alcanzados a través de las personas. Para poder gerenciar el cuidado se debe saber administrar. El objetivo de enfermería es cuidar; el objetivo de la gerencia es la conducción de la producción de bienes o servicios en las organizaciones. La gerencia del cuidado implica: motivación, creatividad, responsabilidad y ética por parte del cuidador y de quien cuida, claridad de actitud frente al ser y al qué hacer por parte del cuidador. Se puede concluir que la gerencia (administración, el cuidado (producto de calidad, el servicio (valor intangible, querer servir son un trinomio que deben ir de la mano de manera integrada para el logro de los objetivos propuestos por la organización de salud y de enfermería.

  18. The complete sequence of marine bacteriophage VpV262 infecting vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment

    International Nuclear Information System (INIS)

    Hardies, Stephen C.; Comeau, Andre M.; Serwer, Philip; Suttle, Curtis A.

    2003-01-01

    The 46,012-bp sequence of the marine bacteriophage VpV262 infecting the bacterium Vibrio parahaemolyticus is reported. The VpV262 sequence reveals that it is a distant relative of marine Roseophage SIO1, and an even more distant relative of coliphage T7. VpV262 and SIO1 appear to represent a widespread marine phage group that lacks an RNA polymerase gene and is ancestral to the T7-like phages. We propose that this group together with the T7-like phages be designated as the T7 supergroup. The ancestral head structure gene module for the T7 supergroup was reconstructed by using sensitive biased Psi-blast searches supplemented by statistical support derived from gene order. In the early and replicative segments, these phages have participated in extensive interchange with the viral gene pool. VpV262 carries a different replicative module than SIO1 and the T7-like phages

  19. White matter integrity in the splenium of the corpus callosum is related to successful cognitive aging and partly mediates the protective effect of an ancestral polymorphism in ADRB2.

    Science.gov (United States)

    Penke, Lars; Muñoz Maniega, Susana; Houlihan, Lorna M; Murray, Catherine; Gow, Alan J; Clayden, Jonathan D; Bastin, Mark E; Wardlaw, Joanna M; Deary, Ian J

    2010-03-01

    It has recently been reported that the evolutionarily ancestral alleles of two functional polymorphisms in the beta(2)-adrenergic receptor gene (ADRB2) were related to higher cognitive ability in the 70 year old participants of the Lothian Birth Cohort 1936 (LBC1936). One emerging important factor in cognitive aging is the integrity of white matter tracts in the brain. Here, we used diffusion tensor MRI-based tractography to assess the integrity of eight white matter tracts in a subsample of the LBC1936. Higher integrity of the splenium of the corpus callosum predicted better cognitive ability in old age, even after controlling for IQ at age 11. Also, the ancestral allele of one ADRB2 SNP was associated with both splenium integrity and better cognitive aging. While the effects of the SNP and splenium integrity on cognitive aging were largely independent, there was some evidence for a partial mediation effect of ADRB2 status via splenium integrity.

  20. Determinantes del ingreso y del gasto corriente de los hogares

    OpenAIRE

    Muñoz C., Manuel

    2004-01-01

    Este ensayo de investigación empírica analiza los determinantes del ingreso y del gasto en los hogares colombianos. Utilizando un modelo del ciclo de vida con datos de la encuesta de hogares de 1994 y 1995, muestra que el comportamiento del ingreso está afectado principalmente por las características demográficas del hogar y los rasgos socio ocupacionales de sus miembros. El comportamiento del gasto está determinado ante todo por el ingreso y, en menor medida, por las características sociales...

  1. Propuesta Pedagógica desde la Cultura del Maíz

    Directory of Open Access Journals (Sweden)

    Jairzhino Panqueba

    2015-06-01

    Full Text Available ¿Por qué se juega el pique, el chole, el tuso?; tal vez esta pregunta no tenga respuesta en las voces de los indios Zenúes que, a diario, reviven estas actividades, ya sea porque en un tiempo eran una "necesidad" en medio de la actividad de siembra, o porque ahora se han erigido como un verdadero aporte a la cultura propia, no solamente de la zona, si no de la cultura Colombiana. La Cultura del Maíz es cuestión de lúdica, es cuestión de re-creación del mundo circundante, es cuestión de visión abstracta del mundo; pero también de acción colectiva, es cuestión de saborear una chicha e’maíz y en ella beberse toda la riqueza ancestral para alimentase y comprender este mundo que cada vez tiende pa’ lo globalizador, pa’ lo inentendible, pa’ lo desconocido, pa’ lo incierto y hacia el desconocimiento de las diferencias, que deben ser tenidas en cuenta, entre otras cosas, como aporte para las muchas necesidades y posibilidades pedagógicas, que afloran a medida que se descubren o se muestran.

  2. Estructura de la población prehistórica del noroeste argentino (sector septentrional

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    Varela, Héctor Hugo

    2004-01-01

    Full Text Available Se estudió la estructura de la poblaci6n prehistórica del sector septentrional del noroeste argentino mediante el empleo de caracteres no-métricos del cráneo. La muestra está constituida por 673 individuos pertenecientes a las regiones de Puna (111, Quebrada de Humahuaca (269, Selvas Occidentales (50 y Valliserrana (243. Se observaron 33 caracteres y se aplicó un diseño tipo factorial "i" por "j" para tablas de contingencia. Mediante la prueba X2 se analizó la distribuci6n de la muestra por sexo, edad, deformación artificial y región. La estructura de la población se estudió empleando análisis de correspondencia, medida media de divergencia estandarizada (sMMD y análisis de agrupamiento. Se comprobó que seis rasgos están asociados con deformación, cinco con sexo, siete con edad y doce con región. Los resultados multivariados revelaron la existencia de dos componentes biológicos, uno constituido por Quebrada de Humahuaca y la Puna y otro por Valliserrana y Las Pirguas. Es posible que dichos componentes se hayan originado a partir de un mismo grupo ancestral probablemente de origen andino y que luego se diferenciaron por la acción de diferentes factores evolutivos (pautas particulares de apareamiento, deriva y migración.

  3. Naupliar and Metanaupliar Development of Thysanoessa raschii (Malacostraca, Euphausiacea from Godthabsfjord, Greenland, with a Reinstatement of the Ancestral Status of the Free-Living Nauplius in Malacostracan Evolution.

    Directory of Open Access Journals (Sweden)

    Hasna Akther

    Full Text Available The presence of a characteristic crustacean larval type, the nauplius, in many crustacean taxa has often been considered one of the few uniting characters of the Crustacea. Within Malacostraca, the largest crustacean group, nauplii are only present in two taxa, Euphauciacea (krill and Decapoda Dendrobranchiata. The presence of nauplii in these two taxa has traditionally been considered a retained primitive characteristic, but free-living nauplii have also been suggested to have reappeared a couple of times from direct developing ancestors during malacostracan evolution. Based on a re-study of Thysanoessa raschii (Euphausiacea using preserved material collected in Greenland, we readdress this important controversy in crustacean evolution, and, in the process, redescribe the naupliar and metanaupliar development of T. raschii. In contrast to most previous studies of euphausiid development, we recognize three (not two naupliar (= ortho-naupliar stages (N1-N3 followed by a metanauplius (MN. While there are many morphological changes between nauplius 1 and 2 (e.g., appearance of long caudal setae, the changes between nauplius 2 and 3 are few but distinct. They involve the size of some caudal spines (largest in N3 and the setation of the antennal endopod (an extra seta in N3. A wider comparison between free-living nauplii of both Malacostraca and non-Malacostraca revealed similarities between nauplii in many taxa both at the general level (e.g., the gradual development and number of appendages and at the more detailed level (e.g., unclear segmentation of naupliar appendages, caudal setation, presence of frontal filaments. We recognize these similarities as homologies and therefore suggest that free-living nauplii were part of the ancestral malacostracan type of development. The derived morphology (e.g., lack of feeding structures, no fully formed gut, high content of yolk of both euphausiid and dendrobranchiate nauplii is evidently related to their

  4. The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora).

    Science.gov (United States)

    Beklemisheva, Violetta R; Perelman, Polina L; Lemskaya, Natalya A; Kulemzina, Anastasia I; Proskuryakova, Anastasia A; Burkanov, Vladimir N; Graphodatsky, Alexander S

    2016-01-01

    Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae-monotypic family), near threatened Steller sea lion (Eumetopias jubatus, Otariidae) and the endemic Baikal seal (Pusa sibirica, Phocidae) using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32). Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years). Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae) as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular.

  5. The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora.

    Directory of Open Access Journals (Sweden)

    Violetta R Beklemisheva

    Full Text Available Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK. However chromosome painting information from two pinniped families (Odobenidae and Otariidae is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae-monotypic family, near threatened Steller sea lion (Eumetopias jubatus, Otariidae and the endemic Baikal seal (Pusa sibirica, Phocidae using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32. Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years. Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular.

  6. The evolution of lipids part 2. Which was comfortable isoprenoid alcohol or fatty acid as the membrane lipids of the common ancestral cell?

    Science.gov (United States)

    Itoh, Y.; Itoh, T.

    A cell is the most fundamental and essential structural unit of all living organisms on the Earth. Even though we will disclose many genomic DNA sequences, the structures and functions of their products, and interactions of them, it isn't possible to create an organism in vitro without cell membrane or barriers with which separate an inner water part from the outer environments. What kinds of molecule were concentrated in the prebiotic soup to be the cradle of genetic materials? Which was comfortable isoprenoid alcohol or fatty acid as the membrane lipids of the common ancestral cell? The struct u ral units of DNA, RNA, and proteins are simple, well organized and common in all the living organisms on the Earth. On the other hand, a great number of molecular species of the membrane lipids are present and each of them is specific for the individual species. Major lipids of all living organisms are derived from a variety of glycerophospholipids, s ulfolipids , glycolipid, phosphosulfoglycolipids, or triterpen family. Where do these molecules distribute in a phylogenetic tree? Among procaryotes, bacterial membrane glycerolipids basically consist of fatty acids as hydrocarbon chains, however, archaeal that do isoprenoid alcohol chains. How did the number of carbon in a fatty acid chain or an isoprenoid chain select ? Which might have an advantage for an easy way to obtain enough length of the membrane lipids, fatty acid or isoprenoid, in the prebiotic soup ? Precursor of an isoprenoid , a mevalonic acid, that is easily soluble in water and also soluble in polar organic solvent. The characteristics of the molecules should be suitable for their functions. In this presentation, based on the comparison of the molecular species of lipids in widespread living organisms including Archaea, Bacteria, and Eucarya, the evolutional position of each molecule will be discussed.

  7. Ancestral state reconstruction reveals multiple independent evolution of diagnostic morphological characters in the "Higher Oribatida" (Acari), conflicting with current classification schemes

    Science.gov (United States)

    2010-01-01

    Background The use of molecular genetic data in phylogenetic systematics has revolutionized this field of research in that several taxonomic groupings defined by traditional taxonomic approaches have been rejected by molecular data. The taxonomic classification of the oribatid mite group Circumdehiscentiae ("Higher Oribatida") is largely based on morphological characters and several different classification schemes, all based upon the validity of diagnostic morphological characters, have been proposed by various authors. The aims of this study were to test the appropriateness of the current taxonomic classification schemes for the Circumdehiscentiae and to trace the evolution of the main diagnostic traits (the four nymphal traits scalps, centrodorsal setae, sclerits and wrinkled cuticle plus octotaxic system and pteromorphs both in adults) on the basis of a molecular phylogenetic hypothesis by means of parsimony, likelihood and Bayesian approaches. Results The molecular phylogeny based on three nuclear markers (28S rDNA, ef-1α, hsp82) revealed considerable discrepancies to the traditional classification of the five "circumdehiscent" subdivisions, suggesting paraphyly of the three families Scutoverticidae, Ameronothridae, Cymbaeremaeidae and also of the genus Achipteria. Ancestral state reconstructions of six common diagnostic characters and statistical evaluation of alternative phylogenetic hypotheses also partially rejected the current morphology-based classification and suggested multiple convergent evolution (both gain and loss) of some traits, after a period of rapid cladogenesis, rendering several subgroups paraphyletic. Conclusions Phylogenetic studies revealed non-monophyly of three families and one genus as a result of a lack of adequate synapomorphic morphological characters, calling for further detailed investigations in a framework of integrative taxonomy. Character histories of six morphological traits indicate that their evolution followed a rather

  8. The Zygosaccharomyces bailii transcription factor Haa1 is required for acetic acid and copper stress responses suggesting subfunctionalization of the ancestral bifunctional protein Haa1/Cup2.

    Science.gov (United States)

    Palma, Margarida; Dias, Paulo Jorge; Roque, Filipa de Canaveira; Luzia, Laura; Guerreiro, Joana Fernandes; Sá-Correia, Isabel

    2017-01-13

    The food spoilage yeast species Zygosaccharomyces bailii exhibits an extraordinary capacity to tolerate weak acids, in particular acetic acid. In Saccharomyces cerevisiae, the transcription factor Haa1 (ScHaa1) is considered the main player in genomic expression reprogramming in response to acetic acid stress, but the role of its homologue in Z. bailii (ZbHaa1) is unknown. In this study it is demonstrated that ZbHaa1 is a ScHaa1 functional homologue by rescuing the acetic acid susceptibility phenotype of S. cerevisiae haa1Δ. The disruption of ZbHAA1 in Z. bailii IST302 and the expression of an extra ZbHAA1 copy confirmed ZbHAA1 as a determinant of acetic acid tolerance. ZbHaa1 was found to be required for acetic acid stress-induced transcriptional activation of Z. bailii genes homologous to ScHaa1-target genes. An evolutionary analysis of the Haa1 homologues identified in 28 Saccharomycetaceae species genome sequences, including Z bailii, was carried out using phylogenetic and gene neighbourhood approaches. Consistent with previous studies, this analysis revealed a group containing pre-whole genome duplication species Haa1/Cup2 single orthologues, including ZbHaa1, and two groups containing either Haa1 or Cup2 orthologues from post-whole genome duplication species. S. cerevisiae Cup2 (alias Ace1) is a transcription factor involved in response and tolerance to copper stress. Taken together, these observations led us to hypothesize and demonstrate that ZbHaa1 is also involved in copper-induced transcriptional regulation and copper tolerance. The transcription factor ZbHaa1 is required for adaptive response and tolerance to both acetic acid and copper stresses. The subfunctionalization of the single ancestral Haa1/Cup2 orthologue that originated Haa1 and Cup2 paralogues after whole genome duplication is proposed.

  9. Las carreras del futuro

    Directory of Open Access Journals (Sweden)

    Luis Piscoya Hermoza

    2011-07-01

    Full Text Available La primera década del siglo XXI ha estado signada por un énfasis en los estudiosde prospectiva, los mismos que, a partir de procesos de complejizacióny articulación de la sociedad planetaria como son la digitalización, el progresivodeterioro del medio ambiente, la necesidad del cambio de la matriz energéticay la globalización del mercado, han ensayado hipótesis para identificar lastendencias que se fortalecerán y profundizarán durante las próximas décadas.Desde el punto de vista metodológico, existen muchas maneras de clasificarlaspara conceptualizarlas y entenderlas mejor. Sin embargo, considerando lanaturaleza de esta edición nos proponemos enfocar directamente aquellas queestán estrechamente ligadas a la formación universitaria.Naturalmente, no pensamos que estamos ante tendencias inevitables en lamedida que epistemológicamente la creencia en leyes históricas deterministases insostenible y la práctica social nos muestra que la construcción del futuroes nuestra responsabilidad y siempre rebasa las mejores previsiones.

  10. Dalt del tren

    Directory of Open Access Journals (Sweden)

    Jaume Subirana

    2001-11-01

    Full Text Available Ens consta que la saviesa popular hi toca més del que a aquest temps d’enquestes, telèfons mòbils i targetes de crèdit li ve de gust admetre, per això em fa gràcia, en veure la pausada però continuada intrusió de la cultura catalana a Internet, recordar les cançons de quan era petit: “Dalt del tren, tots anem-hi dalt del tren, hi ha lloc per tota la gent”, dèiem, i “El tren pinxo de Banyoles és el més bonic que hi ha, ple de llaunes i cassoles i barrets de capellà”. I resulta que per una vegada a la vida hem pujat, efectivament, dalt del tren que passava per l’estació de Catalunya i en cinc anys hem passat de gairebé res a prou pàgines amb un contingut, a més, apreciable i, sobretot, a un petit teixit de persones i institucions que han entès la importància de la revolució comunicativa que Internet representa i que hi teixeixen i projecten webs amb el convenciment dels conversos.

  11. La espiral del mestizaje

    Directory of Open Access Journals (Sweden)

    Guillermo Cervantes

    2009-01-01

    Full Text Available El presente ensayo explora el papel jugado por el mestizaje como instrumento para forjar una identidad nacional en México; donde lo indígena convive y se fusiona con lo europeo, en la persecución y construcción de algo entendido propiamente como mexicano. Partiendo desde la época colonial en la Nueva España, abordaremos el papel concedido al indígena mexicano y su lenta inclusión en la sociedad mediante la adopción de prácticas consideradas como occidentales y civilizadas en detrimento de sus prácticas indígenas tradicionales, consideradas primitivas y atrasadas, como medio de asimilación. Fenómeno que más tarde habría de proponer al mestizo como estereotipo de la identidad nacional mexicana durante el siglo XIX; y que culminaría en su consolidación a principios del siglo XX. Así mismo se aborda la percepción del mestizaje como medio de civilización en la idiosincrasia del mexicano y del méxico-americano para culminar con una evolución de la constante búsqueda de lo occidental, esta vez mediante la asimilación al modo de vida estadounidense, como continuación del proceso civilizatorio entendido como mestizaje

  12. Apostillas acerca del postrabajo

    Directory of Open Access Journals (Sweden)

    Arturo Torrecilla

    2000-04-01

    Full Text Available El más reciente debate en torno al postrabajo transforma la herencia de los dos ciclos que le precedieron desde los años setenta. El primero se correspondía con la crítica de la división social y técnica de labores informada por una filosofía de la alienación o bien por una rectificación de la arquitectónica marxista pero salvaguardando la promesa laborista del buen trabajo. El segundo ciclo hacía eco del rechazo a las cadenas de montaje fordistas y se abría al horizonte de la abolición del trabajo salarial, manteniendo sin embargo el abolengo del sujeto unitario de la historia. La presente escena asume una densidad mayor, producto del encuentro entre las nuevas tecnologías informacionales, las discusiones en el ámbito de la sociología y la antropología, de la tecnología y la ciencia, junto al dueto que inaugura el posmodernismo.

  13. APOSTILLAS ACERCA DEL POSTRABAJO

    Directory of Open Access Journals (Sweden)

    Arturo Torrecilla

    2000-01-01

    Full Text Available El más reciente debate en torno al postrabajo transforma la herencia de los dos ciclos que le precedieron desde los años setenta. El primero se correspondía con la crítica de la división social y técnica de labores informada por una filosofía de la alienación o bien por una rectificación de la arquitectónica marxista pero salvaguardando la promesa laborista del buen trabajo. El segundo ciclo hacía eco del rechazo a las cadenas de montaje fordistas y se abría al horizonte de la abolición del trabajo salarial, manteniendo sin embargo el abolengo del sujeto unitario de la historia. La presente escena asume una densidad mayor, producto del encuentro entre las nuevas tecnologías informacionales, las discusiones en el ámbito de la sociología y la antropología, de la tecnología y la ciencia, junto al dueto que inaugura el posmodernismo.

  14. En defensa del arte del performance

    Directory of Open Access Journals (Sweden)

    Guillermo Gómez-Peña

    2005-12-01

    Full Text Available ¿Qué es "exactamente" el arte del performance? Y ¿qué es lo que hace a un artista de performance ser, pensar y actuar como tal? En este texto, intentaré responder estas preguntas de manera elíptica, creando un bosquejo poético de un performero parado sobre el mapa del arte del performance en el nuevo siglo, según como yo lo percibo. Para ser congruente con mi propia práctica estética, al tiempo que intento responder a estas espinosas preguntas, atravesaré constantemente las fronteras entre la teoría y la crónica; entre los escabrosos terrenos de lo personal y lo social (entre el "yo" y el "nosotros", con la esperanza de descubrir algunas encrucijadas y puentes interesantes. Trataré de escribir con toda la pasión, el valor y la claridad que pueda, aún que la naturaleza resbaladiza y en permanente transformación de este 'campo' nos dificulta en extremo trazar definiciones simplistas.What does it mean performance art? What does it make a performance artist to think, be and act as such? In this text, I will try to answer these questions in a somewhat elliptic fashion, as if it were a poetic essay of a performer standing over the map of performance art in the new century, as I perceive it. In order to be consistent with my own aesthetic practice, at the same time that I attempt to answer these thorny questions, I will constantly cross the frontiers between theory and chronicle; between the frightening fields of the personal and the social ( between "I" and "we", hoping to discover some interesting bridges and crossroads. I will write with all possible passion, value and clarity though the sliding nature and constant transformation of this 'field' make it extremely difficult to come with simplistic definitions.

  15. La transformación del Valle en la literatura del narcotráfico de Rolando Hinojosa

    Directory of Open Access Journals (Sweden)

    María del Carmen García

    2011-12-01

    Full Text Available Esta investigación analiza cómo Rolando Hinojosa, un escritor chicano, explora la transformación socioeconómica en el espacio textual y extratextual de la frontera entre México y los Estados Unidos, específicamente el Valle del Río Grande en Texas. El propósito es estudiar cómo el autor utiliza las convenciones literarias de la novela policíaca para sus fines historiográficos, al explorar en Partners in Crime y Ask a Policeman la transición de una economía local a otra global y basada en el narcotráfico, así como sus implicaciones sociales en un lugar ancestralmente signado por la violencia.This research paper analyzes how Rolando Hinojosa, a Chicano writer, explores the socioeconomic transformation in the textual and extra-textual space on the Mexico-USA border, specifically, the Rio Grande Valley in Texas. It is studied how the autor utilizes the literary conventions of the policial novel for his historiographic purposes, when he explores in Partners in Crime and Ask a Policeman the transition from a local to a globally controlled economy based on narcotraffic and its social implications in a place ancestrally signed by violence.

  16. Ancestral Genres of Mathematical Graphs

    Science.gov (United States)

    Gerofsky, Susan

    2011-01-01

    Drawing from sources in gesture studies, cognitive science, the anthropology of religion and art/architecture history, this article explores cultural, bodily and cosmological resonances carried (unintentionally) by mathematical graphs on Cartesian coordinates. Concepts of asymmetric bodily spaces, grids, orthogonality, mapping and sacred spaces…

  17. Ancestral susceptibility to colorectal cancer

    Czech Academy of Sciences Publication Activity Database

    Huhn, S.; Pardini, Barbara; Naccarati, Alessio; Vodička, Pavel (ed.); Hemminki, K.; Försti, A.

    2012-01-01

    Roč. 27, č. 2 (2012), s. 197-204 ISSN 0267-8357 R&D Projects: GA ČR GA310/07/1430; GA ČR GAP304/10/1286 Grant - others:EU FP7(XE) HEALTH-F4-2007-200767 Institutional research plan: CEZ:AV0Z50390512 Keywords : cancer susceptibility * molecular epidemiology * genetic susceptibility Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.500, year: 2012

  18. Un primitivo Notonychopidae (Litopterna del Paleoceno inferior de Punta Peligro, Chubut, Argentina

    Directory of Open Access Journals (Sweden)

    Morales, J.

    1997-12-01

    Full Text Available The discovery of a new ungulate species, Requisia vidmari gen. nov., nov. sp. in the lower Paleocene of Punta Peligro, Chubut (Argentine represents the earliest known record of Litopterna. The dental morphology of this new genus is very similar to that known for Notonychops powelli Soria, 1989, differing mainly by its more primitive M3, which is less elongated and less selenodont. Requisia vidmari, together with Wainka tshotshe Simpson, 1948, can be included in the family Notonychopidae, which appear to represent an ancestral grade in the evolution of Litopterna. Because cladogenesis of South American ungulates clearly took place prior to the Punta Peligro fauna and was apparently rapid, phylogenetic interpretation is difficult.Se comunica un nuevo ungulado con dentición pre-selenodonta del Paleoceno inferior, Peligrense, de Patagonia, Argentina. Su morfología dentaria es muy similar a la de Notonychops powelli Soria, 1989, pero con caracteres más primitivos. La morfología de las cúspides, el tipo de desgaste y los caracteres crescentiformes del M3 indican que Requisia vidmari gen. nov., sp. nov. presenta fuertes evidencias del desarrollo de caracteres selenodontos, por lo que se lo considera como el más primitivo representante del orden Litopterna. Requisia vidmari y probablemente Wainka tshotshe Simpson, 1948, son primitivos en relación a Notonychops, pero su similitud morfológica justificaría su inclusión en la misma familia Notonychopidae. Se considera que la radiación adaptativa de los ungulados paleocenos de América del Sur fue precoz, eventualmente rápida, lo que dificulta encontrar un modelo filogenético suficientemente explicativo.

  19. Carta del Editor

    Directory of Open Access Journals (Sweden)

    Blasco Fernando Checa Montúfar

    2015-01-01

    Full Text Available La sección "Ética, Medios y Periodismo", se centra en la responsabilidad ética del periodista y del medio. En la sección "Los medios en el medio", se destaca el rol nodal y las tres funciones fundamentales que los medios tienen en la sociedad contemporánea: legitimar lo que transmiten, establecer la realidad (Agenda Setting y mediar, para bien o mal, entre el poder y la ciudadanía. "Nuevas Tecnologías" se recrea en recordar la gestión de la Agencia Informativa Púlsar más el artículo sobre el cibermundo. Con la sección "Apuntes" se completa esta entrega con tres artículos: Los periodistas en la mira, Los desafíos comunicacionales del Mercosur y la Lectura como viaje.

  20. Estenosis malignas del estomago

    Directory of Open Access Journals (Sweden)

    José A. Jácome Valderrama

    1953-09-01

    Full Text Available Al hablar de estenosis malignas del estomago, no vamos a referirnos a las obstrucciones producidas por lesiones extrínsecas, en las cuales influye como causa determinante el fenómeno mecánico de compresión exterior, sino a aquellas lesiones que primitivamente se originan en los tejidos del estomago, vale decir en sus paredes u orificios. Las estenosis intrínsecas malignas del estomago son producidas generalmente por tumores derivados de sus diferentes tejidos y por consiguiente se agrupan en dos grandes tipos, a saber: los sarcomas, los carcinomas y los adenocarcinomas, según se deriven de los tejidos de sostén o conjuntivos y de los tejidos glandulares o epiteliales. Es importante tener en cuenta esto, pues la sintomatología de unos y otros varia considerablemente, ya que afectan funciones diferentes.

  1. LA PERSISTENCIA DEL SUBALTERNO

    Directory of Open Access Journals (Sweden)

    John Beverley

    2002-01-01

    Full Text Available Este trabajo es el texto literal de una ponencia presentada en un panel sobre los estudios culturales latinoamericanos en el congreso de LASA en 2001 en Washington DC. Representa la posición desarrollada en el trabajo colectivo del llamado Grupo de Estudios Subalternos Latinoamericano, desde nuestra fundación en 1992 hasta la disolución del grupo en 2001, que sirve como pretexto introductorio para la ponencia. Los otros participantes en el panel eran Walter Mignolo, representando los estudios poscoloniales, Néstor García Canclini y John Kraniauskas, representando los estudios culturales, y Nelly Richard representando la llamada crítica cultural. El trabajo dialoga y debate con cada una de estas posiciones respectivamente desde el punto de vista específico de los estudios subalternos. Concluye con un llamado a una crítica del saber académico en sí.

  2. "La responsabilidad del sujeto"

    Directory of Open Access Journals (Sweden)

    FRANCISCO J. RENGIFO

    2005-01-01

    Full Text Available Interrogar el concepto de responsabilidad en psicoanálisis requiere de un acto de indulgencia con respecto al debate ético que supone. La posición ética del psicoanálisis dista del paradigma filosófico debido a la revolución ética inspirada por Freud y desarrollada por Lacan. El psicoanálisis anuncia un modelo de responsabilidad esencial e inédito que revoluciona todo paradigma ético. La responsabilidad para el psicoanálisis se inscribe en el registro de un "bien decir", que supone el respeto a la singularidad del sujeto y al deseo que lo habita, así como el derecho al enigma que introduce el inconsciente en la cultura.

  3. Estudio del sector Naval de Mar del Plata

    OpenAIRE

    Garrido, Florencia; Alvarez, José Francisco; Belmonte, Juan Carlos; Graña, Fernando Manuel

    2007-01-01

    Fil: Garrido, Florencia. Cámara de la Industria Naval de Mar del Plata; Argentina. Fil: Alvarez, José Francisco. Universidad Nacional de Mar del Plata. Facultad de Ingeniería; Argentina. Fil: Belmonte, Juan Carlos. Universidad Nacional de Mar del Plata. Facultad de Ingeniería; Argentina. Fil: Graña, Fernando Manuel. Universidad Nacional de Mar del Plata. Facultad de Ciencias Económicas y Sociales; Argentina.

  4. La Esencia del marketing

    OpenAIRE

    López-Pinto Ruíz, Bernardo

    2001-01-01

    Una de las finalidades más importantes de toda empresa es el beneficio. En la actualidad, el modo de conseguir más beneficio ya no es únicamente "incrementar el volumen de ventas", sino que la finalidad del beneficio se persigue a través de la satisfacción del cliente, mediante las herramientas de que dispone la dirección comercial, planificando un marketing adecuado al mercado en el que se desea incidir. Este trabajo pretende dar a conocer de forma generalizada y sintética los principales as...

  5. El lenguaje del cerebro

    Directory of Open Access Journals (Sweden)

    Antonio Ibáñez Molina

    2011-04-01

    Full Text Available La introducción de nuevas técnicas de análisis de ritmos EEG en estudio de la comprensión del lenguaje permite explorar esta habilidad humana desde una perspectiva de integración de grupos de redes neuronales. Los ritmos de disparo neuronal que generan estos grupos pueden conectarse por sincronía formando unidades funcionales transitorias distribuidas en diversas áreas del cerebro. En esta revisión comentamos algunos de estos ritmos y su relación con el lenguaje.

  6. Plasticidad del sistema nervioso

    Directory of Open Access Journals (Sweden)

    L. M. Garcia-Segura

    1976-06-01

    Full Text Available En este trabajo se revisan los conocimientos más recientes sobre el fenómeno de la plasticidad del sistéma nervioso, tanto a nivel morfológico como a nivel fisiológico y molecular. Se estudian los cambios morfólogicos y fisiológicos de las neuronas frente a la experiencia. Tambien se considera la adaptación molecular del sistéma nervioso a la información que recibe como la base de todo tipo de plasticidad.

  7. Voz del anciano

    OpenAIRE

    Sarrasqueta-Sáenz, L. (Laura); Marques-Girbau, M. (Margarita); Ruba, D. (David); Fernandez-Gonzalez, S. (Secundino)

    2006-01-01

    La vejez es en sí un fenómeno biológico que no implica necesariamente una enfermedad. Los fenómenos biológicos del envejecimiento se inician en edades muy tempranas y tiene la capacidad de modificarse, preveerse y compensarse. La educación y la preparación para posibles deterioros debe de ser contemplada desde un plano preventivo. En el ser humano la aparición del lenguaje y su vehículo habitual, la voz; representó la posibilidad de aumentar su longevidad. El deterioro...

  8. Storia del pensiero matematico

    CERN Document Server

    Kline, Morris

    1999-01-01

    Costruita con l'intento di presentare le idee oltre ai protagonisti della matematica, questa storia ha il duplice pregio dell'esaustività e della chiarezza. Essa prevede infatti vari livelli di lettura: lo specialista vi trova una messe di dati, fonti e spunti di ricerca, mentre lo studente ha a disposizione un formidabile strumento di consultazione e sintesi. L'arco temporale coperto è vasto: dalla Mesopotamia a Euclide, da Fibonacci all'invenzione del calcolo infinitesimale, da Gauss a Poincare, con un'appendice dedicata agli sviluppi piu recenti scritta appositamente per la prima edizione italiana del 1991, nei «Manuali» Einaudi.

  9. Historia del Lupus

    OpenAIRE

    Alvaro Rodríguez Gama

    2004-01-01

    Libro del Académico Antonio Iglesias (que ganó el Premio Sanofi-Aventis/ Academia Nacional de Medicina). Comentario del Académico Alvaro Rodríguez Gama Egon Lichtenberg, Manuel Elkin Patarroyo, Fernando Chalem, Javier Molina, Rafael Valle, José Fernando Molina y Ricardo Zúñiga entre tantos otros estudiosos y divulgadores de estos temas. El maestro Iglesias Gamarra relaciona además los esfuerzos realizados por otros científicos en Argentina, Chile, México, Perú, Brasil y Vene...

  10. La equinoterapia en las distintas alteraciones del desarrollo del menor.

    OpenAIRE

    Chamorro González, Mireya

    2015-01-01

    La equinoterapia consiste en la utilización del caballo como un método terapéutico para rehabilitar a personas con discapacidad. Esta terapia es considerada una gran alternativa para aumentar el autoestima de los que sufren algún tipo de discapacidad, también a través de esta terapia se mejora y fortalece el estado emocional, así del mismo modo ayuda a mejorar la manera de desenvolverse en su entorno social. Esta terapia se realiza a través de la trasmisión del calor corporal del caballo, del...

  11. Gestión del riesgo del cambio (segunda parte)

    OpenAIRE

    Zorrilla Salgador, Juan Pablo

    2004-01-01

    Segunda parte del artículo acerca del uso de futuros sobre el tipo de cambio. Esta continuación abarca estrategias, definiciones, metodología y explicaciones sobre todo lo relacionado con el Ratio de cobertura de los futuros y la aparición del riesgo base.Segunda parte del artículo acerca del uso de futuros sobre el tipo de cambio. Esta continuación abarca estrategias, definiciones, metodología y explicaciones sobre todo lo relacionado con el Ratio de cobertura de los futuros y la aparición d...

  12. Gerencia del servicio

    Directory of Open Access Journals (Sweden)

    Nancy Peña Acosta

    1992-02-01

    Full Text Available Estamos en la era de la pirámide invertida donde el cliente es primero por lo que es fundamental incentivar la calidad desde abajo; hacer que el trabajador defina su misión, sienta que es parte de la compañía para que la satisfacción del negocio realizado sea de todos.

  13. Punctualizaciones del CERN

    CERN Document Server

    2002-01-01

    "Viene de la pagina anterior. Puntualizaciones del CERN. La valoracion que me merece la aprobacion en el Consejo de Ministros el 24 de mayo de un acuerdo de colaboracion entre el MCYT y el CERN para el proyecto de neutrinos al Gran Sasso es positiva" (1 page).

  14. Puerta del Sol, Madrid

    DEFF Research Database (Denmark)

    Reeh, Henrik

    2012-01-01

    Professor Eric Corijn (Vrije Universiteit Brussel) og hans virke som dynamisk urbanist blev sat i scene, da 4Cities-masterprogrammet (4Cities.eu) underviste i Madrid midt under bosættelsen på pladsen Puerta del Sol i maj 2011. Artiklen tematiserer forbindelsen mellem det sociale og rumlige liv på...

  15. Nota del Editor

    OpenAIRE

    De Giusti, Armando Eduardo

    2013-01-01

    Descripción del número 11 de la Revista Iberoamericana de Tecnología en Educación y Educación en Tecnología. Compuesta por once trabajos que han sido seleccionados luego de una cuidadosa evaluación por pares, entre 32 trabajos presentados a la revista.

  16. Carta del Editor

    Directory of Open Access Journals (Sweden)

    Luis Eladio Proaño

    2014-12-01

    Full Text Available La publicación se centra en temas como: Procesos electorales en México e Italia, se analizan los procesos comunicacionales y sus efectos; las infiltraciones de las agencias de seguridad en la actividad periodística en Europa; la radio y la televisión pública en los EE.UU. Para conocer cómo la prensa enfrenta los problemas críticos entre países, esta el caso de Uruguay y Argentina (discrepancia por la planta de procesamiento de papel y la contaminación del Río de La Plata. Otro artículo refiere la difícil relación entre los medios de comunicación y el gobierno de Chávez en Venezuela. Se aborda el caso brasileño para entender el crecimiento de los Observatorios de Medios; otro sobre el crecimiento del "periodismo confidencial" en la web y la prensa gratuita. Se estudia el impacto de la telenovela "pasión de gavilanes". Para quienes interese la penetración del Internet está: "Usos y competencias del weblog en las corporaciones" más otro sobre la lucha sorda que mantienen los gigantes de la autopista de la información Google y Yahoo.

  17. del's Proof

    Indian Academy of Sciences (India)

    /fulltext/reso/012/02/0059-0070. Keywords. Gödel; mathematical logic; group theory; set of axioms; set theory; number theory. Author Affiliations. S M Srivastava1. Stat-Math Unit Indian Statistical Institute 203, BT Road Kolkata 700 108, India.

  18. Marketing Mix del Software.

    Directory of Open Access Journals (Sweden)

    Yudith del Carmen Rodríguez Pérez

    2006-03-01

    Por ello, en este trabajo se define el concepto de producto software, se caracteriza al mismo y se exponen sus atributos de calidad. Además, se aborda la mezcla de marketing del software necesaria y diferente a la de otros productos para que este triunfe en el mercado.

  19. El Juego del Juego

    OpenAIRE

    Carvalho, Nazaré Cristina

    2012-01-01

    DUVIGNAUD, Jean. El Juego del Juego. Santafé de Bogotá, Colômbia: Fondo de Cultura Econômica, 1997.The game gameDUVIGNAUD, Jean. The Game Game. Santafé de Bogotá, Colombia: Fondo de Cultura Econômica, 1997

  20. Balanite Egyptiaca Del.

    African Journals Online (AJOL)

    ADOWIE PERE

    2018-03-23

    Mar 23, 2018 ... Molluscicidal Activity of Aqueous Extract of Leaves, Stem Back and Roots of Desert date (Balanite Egyptiaca Del.) against common Liver Fluke (Fasciola Hepatica) found in the Snail (Lymnea natalensis). 1*. ABDULLAHI, Y;. 2. MUHAMMAD, I;. 3. YERIMA, MI. 1Department of Biological Sciences, Federal ...

  1. Gerencia del servicio

    OpenAIRE

    Nancy Peña Acosta

    1992-01-01

    Estamos en la era de la pirámide invertida donde el cliente es primero por lo que es fundamental incentivar la calidad desde abajo; hacer que el trabajador defina su misión, sienta que es parte de la compañía para que la satisfacción del negocio realizado sea de todos.

  2. Rumbos actuales del arte

    Directory of Open Access Journals (Sweden)

    Luis Vidales

    1964-01-01

    Full Text Available Si se nos preguntase cual podría ser la síntesis de los problemas actuales del arte, acaso deberíamos decir que no hay nada que la exprese tan cabalmente como la lucha por los espacios plásticos. Y agregar que este fenómeno no es privativo de nuestro tiempo.

  3. del's Proof

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 12; Issue 5. Gödel's Proof - Incompleteness Theorems. S M Srivastava. General Article Volume 12 Issue 5 May 2007 pp 71-84. Fulltext. Click here to view fulltext PDF. Permanent link: https://www.ias.ac.in/article/fulltext/reso/012/05/0071-0084. Keywords.

  4. Carta del Editor

    Directory of Open Access Journals (Sweden)

    Gino Lofredo

    2015-01-01

    Full Text Available Presenta el análisis de 16 colaboradores que constituye un diagnóstico regional de los medios y las comunicaciones. Se ve evidente la crisis de los medios. Otro artículo trata del cine la política y la integración cultural.

  5. Determinantes del ingreso y del gasto corriente de los hogares

    Directory of Open Access Journals (Sweden)

    Muñoz C., Manuel

    2004-06-01

    Full Text Available Este ensayo de investigación empírica analiza los determinantes del ingreso y del gasto en los hogares colombianos. Utilizando un modelo del ciclo de vida con datos de la encuesta de hogares de 1994 y 1995, muestra que el comportamiento del ingreso está afectado principalmente por las características demográficas del hogar y los rasgos socio ocupacionales de sus miembros. El comportamiento del gasto está determinado ante todo por el ingreso y, en menor medida, por las características sociales del hogar y el gasto de otros hogares con características similares. También examina la influencia de la incertidumbre acerca de los ingresos en el gasto de los hogares para comprobar si estos actúan con motivos de precaución.

  6. Study of Mycobacterium tuberculosis complex genotypic diversity in Malaysia reveals a predominance of ancestral East-African-Indian lineage with a Malaysia-specific signature.

    Science.gov (United States)

    Ismail, Fazli; Couvin, David; Farakhin, Izzah; Abdul Rahman, Zaidah; Rastogi, Nalin; Suraiya, Siti

    2014-01-01

    Tuberculosis (TB) still constitutes a major public health problem in Malaysia. The identification and genotyping based characterization of Mycobacterium tuberculosis complex (MTBC) isolates causing the disease is important to determine the effectiveness of the control and surveillance programs. This study intended a first assessment of spoligotyping-based MTBC genotypic diversity in Malaysia followed by a comparison of strains with those prevailing in neighboring countries by comparison with an international MTBC genotyping database. Spoligotyping was performed on a total of 220 M. tuberculosis clinical isolates collected in Kelantan and Kuala Lumpur. The results were compared with the SITVIT2 international database of the Pasteur Institute of Guadeloupe. Spoligotyping revealed 77 different patterns: 22 corresponded to orphan patterns while 55 patterns containing 198 isolates were assigned a Spoligo International Type (SIT) designation in the database (the latter included 6 newly created SITs). The eight most common SITs grouped 141 isolates (5 to 56 strains per cluster) as follows: SIT1/Beijing, n = 56, 25.5%; SIT745/EAI1-SOM, n = 33, 15.0%; SIT591/EAI6-BGD1, n = 13, 5.9%; SIT256/EAI5, n = 12, 5.5%; SIT236/EAI5, n = 10, 4.6%; SIT19/EAI2-Manila, n = 9, 4.1%; SIT89/EAI2-Nonthaburi, n = 5, 2.3%; and SIT50/H3, n = 3, 1.4%. The association between city of isolation and lineages was statistically significant; Haarlem and T lineages being higher in Kuala Lumpur (p<0.01). However, no statistically significant differences were noted when comparing drug resistance vs. major lineages, nor between gender and clades. The ancestral East-African-Indian (EAI) lineage was most predominant followed by the Beijing lineage. A comparison of strains with those prevailing in neighboring countries in South Asia, East Asia and South East Asia underlined the phylogeographical specificity of SIT745 for Malaysia, and its probable ongoing evolution with locally

  7. Study of Mycobacterium tuberculosis complex genotypic diversity in Malaysia reveals a predominance of ancestral East-African-Indian lineage with a Malaysia-specific signature.

    Directory of Open Access Journals (Sweden)

    Fazli Ismail

    Full Text Available Tuberculosis (TB still constitutes a major public health problem in Malaysia. The identification and genotyping based characterization of Mycobacterium tuberculosis complex (MTBC isolates causing the disease is important to determine the effectiveness of the control and surveillance programs.This study intended a first assessment of spoligotyping-based MTBC genotypic diversity in Malaysia followed by a comparison of strains with those prevailing in neighboring countries by comparison with an international MTBC genotyping database.Spoligotyping was performed on a total of 220 M. tuberculosis clinical isolates collected in Kelantan and Kuala Lumpur. The results were compared with the SITVIT2 international database of the Pasteur Institute of Guadeloupe.Spoligotyping revealed 77 different patterns: 22 corresponded to orphan patterns while 55 patterns containing 198 isolates were assigned a Spoligo International Type (SIT designation in the database (the latter included 6 newly created SITs. The eight most common SITs grouped 141 isolates (5 to 56 strains per cluster as follows: SIT1/Beijing, n = 56, 25.5%; SIT745/EAI1-SOM, n = 33, 15.0%; SIT591/EAI6-BGD1, n = 13, 5.9%; SIT256/EAI5, n = 12, 5.5%; SIT236/EAI5, n = 10, 4.6%; SIT19/EAI2-Manila, n = 9, 4.1%; SIT89/EAI2-Nonthaburi, n = 5, 2.3%; and SIT50/H3, n = 3, 1.4%. The association between city of isolation and lineages was statistically significant; Haarlem and T lineages being higher in Kuala Lumpur (p<0.01. However, no statistically significant differences were noted when comparing drug resistance vs. major lineages, nor between gender and clades.The ancestral East-African-Indian (EAI lineage was most predominant followed by the Beijing lineage. A comparison of strains with those prevailing in neighboring countries in South Asia, East Asia and South East Asia underlined the phylogeographical specificity of SIT745 for Malaysia, and its probable ongoing evolution

  8. Analysis of Gene Candidate SNP and Ancestral Origin Associated to Obesity and Postoperative Weight Loss in a Cohort of Obese Patients Undergoing RYGB.

    Science.gov (United States)

    Velázquez-Fernández, David; Mercado-Celis, Gabriela; Flores-Morales, Jeny; Clavellina-Gaytán, Diana; Vidrio, Ramón; Vidrio, Eduardo; Mosti, Maureen; Sánchez-Aguilar, Hugo; Rodriguez, Donaji; León, Pablo; Herrera, Miguel F

    2017-06-01

    Obesity is the result of a complex interaction between multiple genetic traits and psychological, behavioral, nutritional and environmental factors. The aims of the study were (a) to comparatively evaluate the presence of 20 candidate gene single nucleotide polymorphisms (SNPs) in morbidly obese patients, (2) their association to comorbid conditions and (3) their impact on weight loss after a Roux-en-Y gastric bypass (RYGB). Two hundred forty-nine patients were eligible for this study. Clinical, anthropometric, biochemical and demographic variables were analyzed. Body mass index (BMI) and composition were assessed by bioelectrical impedance. Twenty SNPs were included for analysis. There were 168 Mexican mestizos (67.5 %) and 81 (32.5 %) patients with other ancestral origin. One hundred fifty-nine (64.1 %) were females. Mean ± SD age of the general cohort was 41.1 ± 11.3 years (17-71). Preoperative mean ± SD BMI was 42.5 ± 6.5 kg/m 2 . There were no significant differences between mestizo and non-mestizo for most SNPs except for IFI, LIPC, and ST8SIA2. FTO (OR = 1.71; CI 95 %  = 1.14-2.57; p = 0.008) and APOB (OR = 0.31; CI 95 %  = 0.14-0.72; p = 0.004) result is statistically associated to high blood pressure and FTO (OR = 2.0; CI 95 %  = 1.3-3.1; p = 0.001), GNB3 (OR = 2.69; CI 95 %  = 1.0-7.2; p = 0.04), IFI30 (OR = 2.0; CI 95 %  = 1.16-3.6; p = 0.01), and MC4R (OR = 1.81; CI 95 %  = 1.13-2.9; p = 0.01) to type 2 diabetes (T2D). Based on ANOVA analysis, POMC (rs1042571) was the SNP most significantly associated to a higher weight loss after RYGB. Obese patients have similar SNP frequencies. Several SNP results are statistically associated to high blood pressure and T2D. POMC was significantly associated to a higher surgically induced weight loss.

  9. Andesite Petrogenesis in Nevado de Toluca Stratovolcano, Central Mexico

    Science.gov (United States)

    Gomez-Tuena, A.; Capra, L.; Cai, Y.; Goldstein, S. L.

    2007-05-01

    A popular model for andesite petrogenesis in continental arcs involves a hydrous parental basalt that fractionates and probably assimilates continental crust during ascent. Nevertheless, andesites erupted from polygenetic volcanoes in the Trans-Mexican Volcanic Belt are not entirely consistent with this scenario because: (1) they display a shift to higher SiO2 contents at similar Mg# than true basalts, (2) they trend to lower HREE and HFSE contents with increasing SiO2, and (3) they often show correlated isotopic compositions with proxies for slab inputs but not with fractionation indexes. Young andesites from Toluca stratovolcano (1-0.042 Ma) also display modest adakite-like features (Sr/YToluca rock-suite revealed that some other andesites (2.6-1 Ma) also exhibit very strong negative Ce (Ce/Ce~0.25) anomalies, fractionated HREE patterns (Gd/Yb~4.2), as well as low Zr/Sm (~12.6), and Sr/Y (~12) ratios. These features are not easily explained by low or even high pressure differentiation from a common primitive magma, unless enormous quantities of fractionating accessory minerals are taken into account. And yet these geochemical signals are almost identical to those observed in the pelagic sedimentary horizon of the subducted Cocos plate sampled at DSDP site 487, and thus provide strong evidence for slab-derived sediment contributions to the petrogenesis of Toluca andesites. Since sediment transfer to the Toluca source must have occurred in the form of a silicate melt, the new evidence brings further support to the slab melting hypothesis in the Mexican subduction zone. Interestingly, Ce/Pb ratios of the Toluca rocks display a linear positive correlation with Pb isotopes, that departs from the pelagic sediment values, and extends to the enriched Pb isotopic compositions of intraplate-type volcanic rocks from the Chichinautzin volcanic field. Thus the Toluca rocks likely represent discrete slab-derived melts coming from different portions of the subducted slab that have interacted with the distinctively enriched Mexican mantle wedge.

  10. C1.\taminos del jaguar y el venado. conversación con kuau htli vásquez, médico tradicional mexica

    Directory of Open Access Journals (Sweden)

    Mario Madroñero Morillo

    2013-04-01

    Full Text Available La presente entrevista con Kuahtli Vásquez, médico peyotero de ascendencia mexica, refiere,en primera instancia, las experiencias de aprendizaje del médico tradicional y su relacióncon el contexto político de los indígenas en el norte de México. Luego introduce a otromédico tradicional, esta vez del Putumayo, en busca de la medicina del yagé o ayahuasca,y lo que implica el encuentro entre formas de curación que expresan caminos del saber sinintermediación epistémica, como las prácticas chamánicas del Jaguar y el Venado, o las profecíasdel encuentro entre el Cóndor y el Águila. El propósito final es entrever, entre las palabras delmédico tradicional amerindio, lo que este pensar ancestral puede aportar a los tiempos actuales.

  11. ABC del Ajedrez. I

    Directory of Open Access Journals (Sweden)

    Marisel Piñeiro Gomez

    2009-03-01

    Full Text Available La promoción del Ajedrez, su conocimiento y práctica por la población constituye uno de los programas de la Revolución, por tal motivo el presente trabajo está encaminado a proponer un material bibliográfico con variadas posiciones sobre el movimiento-captura de las piezas y los sistemas de notación para los masificadores de Ajedrez del municipio Pinar del Río. En esta investigación se utilizaron variados métodos: teóricos, empíricos y estadísticos, además, como método rector el dialéctico materialista. Constituye una novedad científica porque aporta un material bibliográfico que contiene: la composición,  disposición  e  identificación  del  tablero de  ajedrez;  identificación, colocación, movimiento y captura de las piezas de ajedrez; la promoción del Peón; el valor absoluto de las piezas; los sistemas de notación: descriptivo y algebraico. Se le incluyen más de trescientos gráficos, conceptos que son trabajados de lo simple a lo complejo de manera tal que el masificador de Ajedrez lo utilice en sus clases donde se viabilice el conocimiento gracias a las facilidades que le aporta el material; ofrece algoritmos que le guiarán a elaborar nuevas posiciones, los cuales son inexistentes para este propósito en otras bibliografías; su significación práctica radica en que proporciona, tanto al estudiantado como profesorado, ejercicios de ajedrez sencillos que les permitirá a los primeros para que les sirva en su comportamiento, y a los segundos utilizarlos en su auto preparación; el interés social se halla en que pueden ser utilizados por profesores, personal de apoyo a la docencia,  técnicos  del  INDER,  familiares  de  los  estudiantes  para  ayudarlos;  el interés educativo reside en que a través de esos ejercicios contribuimos al fortalecimiento de valores.

  12. Estimacion del modulo de elasticidad del concreto y del mortero mediante TCTM

    OpenAIRE

    Quimbay Herrera, Rodrigo

    2012-01-01

    El Modulo de Elasticidad del concreto o Modulo de Young es considerado uno de los mas importantes parámetros en el diseño y construcción de estructuras de concreto reforzado. El Modulo de Elasticidad se calcula a 0.45 de la f’c como la pendiente secante del diagrama esfuerzo y deformación unitaria, y en el caso del concreto el valor aumenta con el tiempo dependiendo de la resistencia, por lo que es dependiente del concreto en particular. En general a mayor resistencia del concreto y mayor den...

  13. Arco del milenio

    Directory of Open Access Journals (Sweden)

    Adell, Josep Mª

    2005-02-01

    the most significant stages in the erection of the Millennium Arch outside the Palacio de Congresos, venue for the 12th IBMAC.
    These pictures are divided into six chapters: Background, Components, Springline, Piers, Arch, Centring Erection and Removal, and Trimming.

    A lo largo de la historia, el Arco de fábrica ha sido el componente constructivo más característico de la Arquitectura y la Ingeniería desde que después de sus inicios etruscos en la época romana fuera desarrollado adelantándose con ello a la cultura helénica.
    El Arco, desde entonces, viene empleándose como una solución constructiva eficiente para cubrir espacios con materiales que no soportan tracciones. La originalidad técnica del Arco lo ha llevado a imponerse como símbolo de las hazañas bélicas como era el Arco de Triunfo.
    En el cambio de siglo y milenio en el que nos encontramos, un salto técnico fundamental se desvela en este Congreso, el Sistema de Albañilería Integral, que abre la posibilidad de ampliar el campo de aplicación de la albañilería con la incorporación del acero, a través de las perforaciones de las piezas, lográndose por fin armar en las tres direcciones del espacio cualquier muro de fábrica que se desee.
    El Arco del Milenio conmemoró el 12th IBMAC de Madrid, mostrando en él los avances técnicos que el Sistema de Albañilería Integral permite, al tratarse de un arco inclinado en el espacio y, por tanto, el primer arco de fábrica construido fuera de la vertical, mediante fábrica de Ladriflor aparejada a tizón, reforzada con barras y cercos.
    El Arco del Milenio, diseñado por J.M. Adell (Presidente del 12th IBMAC, parte de un cilindro de 14 m de diámetro, inclinado 30º sobre el terreno, y construido con fábrica de ladrillo de un pie de grueso, alternando una hilada de color amarillo de cada seis en rojo. El hueco deja un paso libre de 10 m de lado y 5,5 m de altura. La fábrica está armada regularmente por tendeles con cerchas cada

  14. Aplicación de las pruebas estadísticas de discordancia y significancia en la comparación del vulcanismo dacítico de la parte central de Cinturón Volcánico Mexicano

    Directory of Open Access Journals (Sweden)

    Lorena Díaz-González

    2013-01-01

    Full Text Available Nuestro objetivo es presentar una metodología estadística, junto con dos nuevos programas (DODESSYS y UDASYS. Para esta tarea compilamos una base de datos de 249 muestras de rocas dacitas provenientes de cuatro regiones del cinturón volcánico mexicano (MVB: volcanes monogenéticos de la Sierra de Chichinautzin y el Valle de México, estratovolcán Nevado de Toluca, estratovolcán Iztaccíhuatl y estratovolcán Popocatépetl. Las pruebas estadísticas de discordancia y significancia (ANOVA –ANalysis Of Variance–, F de Fisher y t de Student fueron aplicadas al 99% de nivel de confianza. Se calculó la estadística final para 98 parámetros, incluyendo óxidos mayores, elementos de tierras raras, elementos traza y parámetros adicionales, tales como parámetros de relaciones logarítmicas usados en nuevos diagramas de discriminación tectónica. Estos parámetros fueron tratados como muestras estadísticas univariadas y fueron clasificados en cuatro regiones del MVB. Las pruebas estadísticas de discordancia detectaron datos discordantes en 124 (aproximadamente en el 35% muestras estadísticas univariadas. La prueba ANOVA mostró diferencias significativas entre todos los grupos en 32 parámetros. Las similitudes y diferencias entre los parámetros de relaciones logarítmicas pueden ser útiles en el fu