WorldWideScience

Sample records for anamorphs

  1. The Widescreen Anamorphic Lens

    NARCIS (Netherlands)

    Willemsen, Steven; Fossati, Giovanna; van den Oever, Annie

    2016-01-01

    This article examines the transformative impact of anamorphic widescreen technology on film aesthetics, in two parts: first, I discuss how the affordances of early anamorphic widescreen technology (primarily CinemaScope) played a key role in standardizing widescreen formats in the Hollywood film ind

  2. The anamorphic universe

    CERN Document Server

    Ijjas, Anna

    2015-01-01

    We introduce "anamorphic" cosmology, an approach for explaining the smoothness and flatness of the universe on large scales and the generation of a nearly scale-invariant spectrum of adiabatic density perturbations. The defining feature is a smoothing phase that acts like a contracting universe based on some Weyl frame-invariant criteria and an expanding universe based on other frame-invariant criteria. An advantage of the contracting aspects is that it is possible to avoid the multiverse and measure problems that arise in inflationary models. Unlike ekpyrotic models, anamorphic models can be constructed using only a single field and can generate a nearly scale-invariant spectrum of tensor perturbations. Anamorphic models also differ from pre-big bang and matter bounce models that do not explain the smoothness. We present some examples of cosmological models that incorporate an anamorphic smoothing phase.

  3. The anamorphic universe

    Science.gov (United States)

    Ijjas, Anna; Steinhardt, Paul J.

    2015-10-01

    We introduce ``anamorphic'' cosmology, an approach for explaining the smoothness and flatness of the universe on large scales and the generation of a nearly scale-invariant spectrum of adiabatic density perturbations. The defining feature is a smoothing phase that acts like a contracting universe based on some Weyl frame-invariant criteria and an expanding universe based on other frame-invariant criteria. An advantage of the contracting aspects is that it is possible to avoid the multiverse and measure problems that arise in inflationary models. Unlike ekpyrotic models, anamorphic models can be constructed using only a single field and can generate a nearly scale-invariant spectrum of tensor perturbations. Anamorphic models also differ from pre-big bang and matter bounce models that do not explain the smoothness. We present some examples of cosmological models that incorporate an anamorphic smoothing phase.

  4. Cyclic anamorphic cosmology

    CERN Document Server

    Ijjas, Anna

    2016-01-01

    Cyclic models of the universe have the advantage of avoiding initial conditions problems related to postulating any sort of beginning in time. To date, the only known viable examples of cyclic models have been ekpyrotic. In this paper, we show that the recently proposed anamorphic scenario can also be made cyclic. The key to the cyclic completion is a classically stable, non-singular bounce. Remarkably, even though the bounce construction was originally developed to connect a period of contraction with a period of expansion both described by Einstein gravity, we show here that it can naturally be modified to connect an ordinary contracting phase described by Einstein gravity with a phase of anamorphic smoothing. The paper will present the basic principles and steps in constructing cyclic anamorphic models.

  5. Redisposition of phoma-like anamorphs in Pleosporales

    NARCIS (Netherlands)

    de Gruyter, J; Woudenberg, J H C; Aveskamp, M M; Verkley, G J M; Groenewald, J Z; Crous, P W

    2013-01-01

    UNLABELLED: The anamorphic genus Phoma was subdivided into nine sections based on morphological characters, and included teleomorphs in Didymella, Leptosphaeria, Pleospora and Mycosphaerella, suggesting the polyphyly of the genus. Recent molecular, phylogenetic studies led to the conclusion that Pho

  6. Cordyceps bassiana and production of stromata in vitro showing Beauveria anamorph in Korea

    Science.gov (United States)

    A Cordyceps species was found with Beauveria anamorph state on larval insect cadavers on Obong Mountsin in Gangwon Pronvince, Republic of Korea. Cultures from discharged ascospores formed an anamorph identifiable as Beauveria bassiana. This teleomorph-anamorph connection was also confirmed by the in...

  7. Anamorphic integral field spectrometer for diffuse ultraviolet astronomy.

    Science.gov (United States)

    Cook, Timothy

    2013-12-20

    We present the design of a novel anamorphic integral field spectrometer for diffuse ultraviolet astronomy. The system is designed to be able to measure emissions from faint diffuse astrophysical sources across a large field with good spectral resolving power. The design uses a standard focal plane image slicer and an anamorphic relay mirror and spectrometer to achieve an exceptional area, field of view, resolving power (AΩR) product, the key figure of merit for a spectroscopic system intended to study line emission from extended or diffuse sources. We present a typical design with R∼1000 and an effective etendue (AΩ) of 1.5×10(-4)cm2 sr.

  8. Fatal cutaneous mycosis in tentacled snakes caused by the chrysosporium anamorph of nannizziposis vriesii

    DEFF Research Database (Denmark)

    Bertelsen, Mads Frost; Crawshaw, Graham J.; Sigler, Lynne

    2005-01-01

    The fungus Chrysosporium anamorph of Nannizziopsis vriesii was identified as the caurse of fatal, multifocal, heterophilic dermatitis in for freshwater aquatic captive-bred tentacled snakes......The fungus Chrysosporium anamorph of Nannizziopsis vriesii was identified as the caurse of fatal, multifocal, heterophilic dermatitis in for freshwater aquatic captive-bred tentacled snakes...

  9. Research of 3D display using anamorphic optics

    Science.gov (United States)

    Matsumoto, Kenji; Honda, Toshio

    1997-05-01

    This paper describes the auto-stereoscopic display which can reconstruct more reality and viewer friendly 3-D image by increasing the number of parallaxes and giving motion parallax horizontally. It is difficult to increase number of parallaxes to give motion parallax to the 3-D image without reducing the resolution, because the resolution of display device is insufficient. The magnification and the image formation position can be selected independently in horizontal direction and the vertical direction by projecting between the display device and the 3-D image with the anamorphic optics. The anamorphic optics is an optics system with different magnification in horizontal direction and the vertical direction. It consists of the combination of cylindrical lenses with different focal length. By using this optics, even if we use a dynamic display such as liquid crystal display (LCD), it is possible to display the realistic 3-D image having motion parallax. Motion parallax is obtained by assuming width of the single parallax at the viewing position to be about the same size as the pupil diameter of viewer. In addition, because the focus depth of the 3-D image is deep in this method, conflict of accommodation and convergence is small, and natural 3-D image can be displayed.

  10. Ranking Catamorphisms and Unranking Anamorphisms on Hereditarily Finite Datatypes

    CERN Document Server

    Tarau, Paul

    2008-01-01

    Using specializations of unfold and fold on a generic tree data type we derive unranking and ranking functions providing natural number encodings for various Hereditarily Finite datatypes. In this context, we interpret unranking operations as instances of a generic anamorphism and ranking operations as instances of the corresponding catamorphism. Starting with Ackerman's Encoding from Hereditarily Finite Sets to Natural Numbers we define pairings and tuple encodings that provide building blocks for a theory of Hereditarily Finite Functions. The more difficult problem of ranking and unranking Hereditarily Finite Permutations is then tackled using Lehmer codes and factoradics. The self-contained source code of the paper, as generated from a literate Haskell program, is available at \\url{http://logic.csci.unt.edu/tarau/research/2008/fFUN.zip}. Keywords: ranking/unranking, pairing/tupling functions, Ackermann encoding, hereditarily finite sets, hereditarily finite functions, permutations and factoradics, computat...

  11. Orbilia orientalis and its anamorph%东方圆盘菌及其无性型

    Institute of Scientific and Technical Information of China (English)

    任艳玲; 刘斌; 陈艳露; 李永江

    2014-01-01

    [Objective]To identify the Orbilia orientalis collected from dead branches .[Method]Its ana-morph was isolated from the ascospores of Orbilia orientalis.[Result and conclusion]The anamorph was identified as Drechslerella cf.brochopaga.The connection between anamorph Orbilia orientalis and teleo-morph Drechslerella cf.brochopaga was established .%[目的]东方圆盘菌Orbilia orientalis及其无性型的鉴定.[方法]从枯树枝上采集标本;通过子囊孢子弹射法分离到其无性型.[结果和结论]该标本被鉴定为Orbilia orientalis;无性型被鉴定为Drechslerella cf.brochopaga;建立了有性型Orbilia orientalis和无性型Drechslerella cf.brochopaga之间的对应关系.

  12. The anamorphic state of Leveillula taurica recorded on Cleome spinosa in north-eastern Brazil

    Directory of Open Access Journals (Sweden)

    Carlos AC

    2012-05-01

    Full Text Available The anamorphic state of Leveillula taurica was found causing a powdery mildew disease on Cleome spinosa in north-eastern Brazil. Its chasmothecial state was not observed on the collected samples. The fungus is illustrated and described. This report represents the first record of this fungus on Cleome spinosa in Brazil.

  13. Non-Minimally Coupled Inflation with a Pre-Inflation Anamorphic Contracting Era

    CERN Document Server

    McDonald, John

    2015-01-01

    Inflation due to a non-minimally coupled scalar field, as first proposed by Salopek, Bardeen and Bond (SBB), is in good agreement with the observed value of spectral index and constraints on the tensor-to-scalar ratio. Here we explore the possibility that SBB inflation represents the late stage of a Universe which emerges from an early contracting era. We present a model in which the Universe smoothly transitions from an anamorphic contracting era to late-time SBB inflation without encountering a singular bounce. This corresponds to a continuous expansion in the Einstein frame throughout. We show that the anamorphic contracting era is able to provide the smooth superhorizon initial conditions necessary for subsequent SBB inflation to occur. The model predicts corrections to the non-minimal coupling, kinetic term and potential of SBB inflation which can observably increase the observed spectral index relative to its SBB prediction.

  14. Characterization of the anamorphic and frequency dependent phenomenon in Liquid Crystal on Silicon displays

    Science.gov (United States)

    Lobato, L.; Lizana, A.; Márquez, A.; Moreno, I.; Iemmi, C.; Campos, J.; Yzuel, M. J.

    2011-04-01

    The diffractive efficiency of Liquid Crystal on Silicon (LCoS) displays can be greatly diminished by the appearance of temporal phase fluctuations in the reflected beam, depolarization effects and also because of phase modulation depths smaller than 2π. In order to maximize the efficiency of the Diffractive Optical Elements (DOEs) implemented in the LCoS device, the Minimum Euclidean Distance principle can be applied. However, not all the diffractive elements can be corrected in the same way due to the anamorphic and frequency dependent phenomenon, which is related to the LCoS response, largely dependending on the period and the spatial orientation of the generated DOE. Experimental evidence for the anamorphic and frequency dependent phenomenon is provided in this paper, as well as a comparative study between the efficiency obtained for binary gratings of different periods

  15. Isaria takamizusanensis is the anamorph of Cordyceps ryogamimontana, warranting a new combination, Purpureocillium takamizusanense comb. nov.

    Science.gov (United States)

    Ban, Sayaka; Azuma, Yuta; Sato, Hiroki; Suzuki, Ken-Ichiro; Nakagiri, Akira

    2015-08-01

    The entomogenous anamorphic fungus Isaria takamizusanensis has not been resolved clearly in its teleomorphic state. We succeeded in inducing ascostroma formation by incubating conidiomata of I. takamizusanensis on cicada adults in a moist chamber. We observed the ascostroma and conducted a phylogenetic analysis based on ITS rDNA and EF-1α genes. The morphology of the ascostroma was identical to that of Cordyceps ryogamimontana. In the phylogenetic tree inferred from EF-1α, the isolate from the partspores grouped with nine strains derived from conidia of I. takamizusanensis, which was distinct from a clade including Purpureocillium lilacinum. Moreover, a conidial structure identical to that of I. takamizusanensis was rediscovered on the holotype specimen of C. ryogamimontana. As a result, we propose a new name, Purpureocillium takamizusanense, which is a combination of the teleomorph-anamorph connection of C. ryogamimontana-I. takamizusanensis, in accordance with the 'one fungus, one name' concept of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN).

  16. Towards an improved description of ocean uncertainties: effect of local anamorphic transformations on spatial correlations

    Directory of Open Access Journals (Sweden)

    J.-M. Brankart

    2011-10-01

    Full Text Available The objective of this paper is to investigate if the description of ocean uncertainties can be significantly improved by applying a local anamorphic transformation to each model variable, and by making the assumption of joint Gaussianity for the transformed variables, rather than for the original variables. For that purpose, it is first argued that a significant improvement can already be obtained by deriving the local transformations from a simple histogram description of the marginal distributions. Two distinctive advantages of this solution for large size applications are the conciseness and the numerical efficiency of the description. Second, various oceanographic examples are used to evaluate the effect of the resulting piecewise linear local anamorphic transformations on the spatial correlation structure. These examples include (i stochastic ensemble descriptions of the effect of atmospheric uncertainties on the ocean mixed layer, and of wind uncertainties or parameter uncertainties on the ecosystem, and (ii non-stochastic ensemble descriptions of forecast uncertainties in current sea ice and ecosystem pre-operational developments. The results indicate that (i the transformation is accurate enough to faithfully preserve the correlation structure if the joint distribution is already close to Gaussian, and (ii the transformation has the general tendency of increasing the correlation radius as soon as the spatial dependence between random variables becomes nonlinear, with the important consequence of reducing the number of degrees of freedom in the uncertainties, and thus increasing the benefit that can be expected from a given observation network.

  17. Towards an improved description of ocean uncertainties: effect of local anamorphic transformations on spatial correlations

    Directory of Open Access Journals (Sweden)

    J.-M. Brankart

    2012-03-01

    Full Text Available The objective of this paper is to investigate if the description of ocean uncertainties can be significantly improved by applying a local anamorphic transformation to each model variable, and by making the assumption of joint Gaussianity for the transformed variables, rather than for the original variables. For that purpose, it is first argued that a significant improvement can already be obtained by deriving the local transformations from a simple histogram description of the marginal distributions. Two distinctive advantages of this solution for large size applications are the conciseness and the numerical efficiency of the description. Second, various oceanographic examples are used to evaluate the effect of the resulting piecewise linear local anamorphic transformations on the spatial correlation structure. These examples include (i stochastic ensemble descriptions of the effect of atmospheric uncertainties on the ocean mixed layer, and of wind uncertainties or parameter uncertainties on the ecosystem, and (ii non-stochastic ensemble descriptions of forecast uncertainties in current sea ice and ecosystem pre-operational developments. The results indicate that (i the transformation is accurate enough to faithfully preserve the correlation structure if the joint distribution is already close to Gaussian, and (ii the transformation has the general tendency of increasing the correlation radius as soon as the spatial dependence between random variables becomes nonlinear, with the important consequence of reducing the number of degrees of freedom in the uncertainties, and thus increasing the benefit that can be expected from a given observation network.

  18. Phylogeny and taxonomic revision of the Planistromellaceae including its coelomycetous anamorphs: contributions towards a monograph of the genus Kellermania

    Science.gov (United States)

    The core species of the family Planistromellaceae are included in the teleomorphic genera Planistroma and Planistromella and their anamorphic, coelomycetous genera Alpakesa, Kellermania, and Piptarthron. These genera have been defined primarily on the basis of ascospore septation or number of conidi...

  19. A monograph of Allantonectria, Nectria, and Pleonectria (Nectriaceae, Hypocreales, Ascomycota) and their pycnidial, sporodochial, and synnematous anamorphs

    Science.gov (United States)

    Although Nectria is the type genus of Nectriaceae (Hypocreales, Sordariomycetes, Pezizomycotina, Ascomycota), the systematics of the teleomorphic and anamorphic state of Nectria sensu Rossman has not been studied in detail. The objectives of this study were to 1) provide a phylogenetic overview to d...

  20. Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana

    NARCIS (Netherlands)

    Arzanlou, M.; Groenewald, J.Z.; Fullerton, R.A.; Abeln, E.C.A.; Carlier, J.; Zapater, M.-F.; Buddenhagen, I.W.; Viljoen, A.; Crous, P.W.

    2008-01-01

    Three species of Mycosphaerella, namely M. eumusae, M. fijiensis, and M. musicola are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is kno

  1. Orbilia querci sp. nov. and its knob-forming nematophagous anamorph.

    Science.gov (United States)

    Liu, Bin; Liu, Xing-Zhong; Zhuang, Wen-Ying

    2005-04-01

    Orbilia querci, a new nematode-trapping fungus, was found on rotten wood of Quercus sp. in Huai-rou County, Beijing, China. It is characterized by having a tear-shaped spore body in the cylindrical ascospore. Pure culture was obtained from the ascospores. Conidiophores were simple or occasionally branched, bearing a single conidium on the tip. Conidia were spindle-shaped, mostly with 3-septa. Nematodes were captured by means of adhesive stalked knobs. The adhesive knobs were produced frequently on nutritional agar plates even in the absence of challenging nematodes. Its anamorph is placed in Dactylellina and named as D. querci. The sequence divergence of the ITS1 region between the fungus and the other knob-forming species tested was 23.8-33.4%, supporting O. querci as a distinct species. This is the first report of the connection between a knob-forming nematophagous hyphomycete and an Orbilia teleomorph.

  2. Anamorphic Quasiperiodic Universes in Modified and Einstein Gravity with Loop Quantum Gravity Corrections

    CERN Document Server

    Amaral, Marcelo M; Bubuianu, Laurenţiu; Irwin, Klee; Vacaru, Sergiu I; Woolridge, Daniel

    2016-01-01

    The goal of this work is to elaborate on new geometric methods of constructing exact and parametric quasiperiodic solutions for anamorphic cosmology models in modified gravity theories, MGTs, and general relativity, GR. There exist previously studied generic off-diagonal and diagonalizable cosmological metrics encoding gravitational and matter fields with quasicrystal like structures, QC, and holonomy corrections from loop quantum gravity, LQG. We apply the anholonomic frame deformation method, AFDM, in order to decouple the (modified) gravitational and matter field equations in general form. This allows us to find integral varieties of cosmological solutions determined by generating functions, effective sources, integration functions and constants. The coefficients of metrics and connections for such cosmological configurations depend, in general, on all spacetime coordinates and can be chosen to generate observable (quasi)-periodic/ aperiodic/ fractal / stochastic / (super) cluster / filament / polymer like...

  3. Implications of Planck2015 for inflationary, ekpyrotic and anamorphic bouncing cosmologies

    CERN Document Server

    Ijjas, Anna

    2015-01-01

    The results from Planck2015, when combined with earlier observations from WMAP, ACT, SPT and other experiments, were the first observations to disfavor the "classic" inflationary paradigm. To satisfy the observational constraints, inflationary theorists have been forced to consider plateau-like inflaton potentials that introduce more parameters and more fine-tuning, problematic initial conditions, multiverse-unpredictability issues, and a new 'unlikeliness problem.' Some propose turning instead to a "postmodern" inflationary paradigm in which the cosmological properties in our observable universe are only locally valid and set randomly, with completely different properties (and perhaps even different physical laws) existing in most regions outside our horizon. By contrast, the new results are consistent with the simplest versions of ekpyrotic cyclic models in which the universe is smoothed and flattened during a period of slow contraction followed by a bounce, and another promising bouncing theory, anamorphic...

  4. Anamorphic Spectrum Transform and its Application to Time-Bandwidth Compression

    CERN Document Server

    Asghari, Mohammad H

    2013-01-01

    A mathematical transform for compressing the time-bandwidth product of analog signals is introduced. As one of its applications, this physics-based signal grooming allows a conventional digitizer to sample and digitize the analog signal with variable resolution. The net result is that frequency components that were beyond the digitizer bandwidth can now be captured and, at the same time, the total digital data volume is reduced. This analog compression is loss-less and is made possible because the proposed transformation, performed prior to sampling, causes more samples to be allocated to higher frequencies, where they are needed, and less to lower frequencies, where they are redundant. Our method is inspired by operation of Fovea centralis in human eye and by anamorphic transformation in visual arts. The proposed transform can also be performed in digital domain as a data compression algorithm to alleviate the storage and transmission bottlenecks of big data.

  5. A monograph of the entomopathogenic genera Hypocrella, Moelleriella, and Samuelsia gen. nov. (Ascomycota, Hypocreales, Clavicipitaceae), and their aschersonia-like anamorphs in the Neotropics

    Science.gov (United States)

    Chaverri, P.; Liu, M.; Hodge, K.T.

    2008-01-01

    The present taxonomic revision deals with Neotropical species of three entomopathogenic genera that were once included in Hypocrella s. l.: Hypocrella s. str. (anamorph Aschersonia), Moelleriella (anamorph aschersonia-like), and Samuelsia gen. nov (anamorph aschersonia-like). Species of Hypocrella, Moelleriella, and Samuelsia are pathogens of scale insects (Coccidae and Lecaniidae, Homoptera) and whiteflies (Aleyrodidae, Homoptera) and are common in tropical regions. Phylogenetic analyses of DNA sequences from nuclear ribosomal large subunit (28S), translation elongation factor 1-α (TEF 1-α), and RNA polymerase II subunit 1 (RPB1) and analyses of multiple morphological characters demonstrate that the three segregated genera can be distinguished by the disarticulation of the ascospores and shape and size of conidia. Moelleriella has filiform multi-septate ascospores that disarticulate at the septa within the ascus and aschersonia-like anamorphs with fusoid conidia. Hypocrella s. str. has filiform to long-fusiform ascospores that do not disarticulate and Aschersonia s. str. anamorphs with fusoid conidia. The new genus proposed here, Samuelsia, has filiform to long-fusiform ascospores that do not disarticulate and aschersonia-like anamorphs with small allantoid conidia. In addition, the present study presents and discusses the evolution of species, morphology, and ecology in Hypocrella, Moelleriella, and Samuelsia based on multigene phylogenetic analyses. PMID:18490956

  6. Taxonomy and phylogeny of the ascomycetous yeast genus Zygoascus, with proposal of Zygoascus meyerae sp. nov. and related anamorphic varieties.

    Science.gov (United States)

    Smith, Maudy Th; Robert, V; Poot, G A; Epping, Wendy; de Cock, A W A M

    2005-05-01

    Physiological characters, mating compatibility, PCR-RAPD fingerprints, mol% G + C content, DNA-DNA relatedness, and large-subunit and internal transcribed spacer rRNA gene sequences of strains assigned to the genus Zygoascus were re-examined. On the basis of those data, and after phylogenetic analyses, an emendation of Zygoascus hellenicus (type material is a cross of CBS 6736(T) x CBS 5839(T)) is proposed, comprising two novel anamorphic varieties, Candida steatolytica var. steatolytica (CBS 6736(T)) and C. steatolytica var. inositophila (CBS 5839(T)). A novel teleomorphic species, Zygoascus meyerae sp. nov. (type material is a cross of CBS 4099(T) x CBS 7521(T)) is described, together with two novel anamorphic varieties corresponding to it, Candida hellenica var. hellenica (CBS 4099(T)) and C. hellenica var. acidophila (CBS 7115(T)).

  7. 打造出色的光学性能 Schneider Cine-Digitar Anamorphic 1.33x

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Cine-Digitar Anamorphic 1.33x是Schneider推出的高品质变形镜头,采用全肖特(SCHOTT)玻璃镜片,具有最高的MIF值,控制四角变形达到最低值;减损的亮度控制在极限的-2%内,忠实再现接近100%的画面本质。

  8. Ghost reflections of Gaussian beams in anamorphic optical systems with an application to Michelson interferometer.

    Science.gov (United States)

    Abd El-Maksoud, Rania H

    2016-02-20

    In this paper, a methodology is developed to model and analyze the effect of undesired (ghost) reflections of Gaussian beams that are produced by anamorphic optical systems. The superposition of these beams with the nominal beam modulates the nominal power distribution at the recording plane. This modulation may cause contrast reduction, veiling parts of the nominal image, and/or the formation of spurious interference fringes. The developed methodology is based on synthesizing the beam optical paths into nominal and ghost optical beam paths. Similar to the nominal beam, we present the concept that each ghost beam is characterized by a beam size, wavefront radius of curvature, and Gouy phase in the paraxial regime. The nominal and ghost beams are sequentially traced through the system and formulas for estimating the electric field magnitude and phase of each ghost beam at the recording plane are presented. The effective electric field is the addition of the individual nominal and ghost electric fields. Formulas for estimating Gouy phase, the shape of the interference fringes, and the central interference order are introduced. As an application, the theory of the formation of the interference fringes by Michelson interferometer is presented. This theory takes into consideration the ghost reflections that are formed by the beam splitter. To illustrate the theory and to show its wide applicability, simulation examples that include a Mangin mirror, a Michelson interferometer, and a black box optical system are provided.

  9. Identification of Anamorph Yeast of Tremella aurantialba and Optimization of Medium Composition for Production of Exopolysaccharides

    Institute of Scientific and Technical Information of China (English)

    刘春卉; 杨秀伟; 俞建国; 马维新; 瞿伟菁; 包艳洁; 武文斌; 庄秀园

    2012-01-01

    A yeast-like fungus strain B1 isolated from wild fungus Tremella aurantialba was identified and initially characterized.Two phylogenetic trees were generated based on the sequences of large subunit ribosomal RNA gene D1/D2 regions and internal transcribed spacer (ITS) regions of related fungi,respectively.The analysis of D1/D2 regions and ITS sequences showed that fungus B1 was clustered together with T.aurantialba,T.aurantia and T.microspore in the phylogenetic trees.Both the morphological characteristic and phylogenetic analysis established that fungus B1 was one of the anamorph strains of T.aurantialba and belongs to Tremella genus.A fermentation medium for exopolysaccharides (EPS)production by T.aurantialba B1.Plackett-Burmen design was used to evaluate the effects of different components in the culture medium.Glucose and yeast extract have significant influence on the EPS production.The concentrations of two factors were optimized subsequently using central composite design and response surface analysis.The results showed that 49.2 g/L glucose and 10.4 g/L yeast extract could lead to the maximum production of EPS (4.99 g/L).The optimized medium led to a 1.5-fold enhancement of the production of EPS by T.aurantialba B1,as compared with that without optimization.

  10. Implications of Planck2015 for inflationary, ekpyrotic and anamorphic bouncing cosmologies

    Science.gov (United States)

    Ijjas, Anna; Steinhardt, Paul J.

    2016-02-01

    The results from Planck2015, when combined with earlier observations from the Wilkinson Microwave Anisotropy Probe, Atacama Cosmology Telescope, South Pole Telescope and other experiments, were the first observations to disfavor the ‘classic’ inflationary paradigm. To satisfy the observational constraints, inflationary theorists have been forced to consider plateau-like inflaton potentials that introduce more parameters and more fine-tuning, problematic initial conditions, multiverse-unpredictability issues, and a new ‘unlikeliness problem’. Some propose turning instead to a ‘postmodern’ inflationary paradigm in which the cosmological properties in our observable Universe are only locally valid and set randomly, with completely different properties (and perhaps even different physical laws) existing in most regions outside our horizon. By contrast, the new results are consistent with the simplest versions of ekpyrotic cyclic models in which the Universe is smoothed and flattened during a period of slow contraction followed by a bounce, and another promising bouncing theory, anamorphic cosmology, has been proposed that can produce distinctive predictions.

  11. Seed-borne Botryosphaeria spp. from native Prunus and Podocarpus trees in Ethiopia, with a description of the anamorph Diplodia rosulata sp. nov.

    Science.gov (United States)

    Gure, Abdella; Slippers, Bernard; Stenlid, Jan

    2005-09-01

    Botryosphaeria spp. from seeds of the native afromontane forest tree species, Podocarpus falcatus and Prunus africana, in Ethiopia have been identified. This is achieved by combining anamorph morphological characters and ITS sequence data. From a relatively small sample, four Botryosphaeria spp. were encountered. Two of the species from P. falcatus and the one from P. africana have not been previously described. The two species from P. falcatus were represented by only one isolate each and are not named here. The morphology of their Diplodia and Dothiorella anamorphs is, however, characterised. The anamorph of the other Botryosphaeria sp. from P. africana is described here as Diplodia rosulata sp. nov. Furthermore, B. parva is identified from P. falcatus based on ITS phylogeny. This species is also an important pathogen of various commercially important tree species in Ethiopia and elsewhere. This study highlights the ability of Botryosphaeria spp. to infect seeds and the possibility that they might be distributed in this way. The study also contributes to recent attempts to stabilize the taxonomy of Botryosphaeria anamorphs, especially regarding Diplodia, which is currently in taxonomic disarray.

  12. Systematics of the anamorphic basidiomycetous yeast genus Trichosporon Behrend with the description of the five novel species: Trichosporon vadense, T. smithiae, T. dehoogii, T. scarabaeorum and T. gamsii

    NARCIS (Netherlands)

    Middelhoven, W.J.; Scorzetti, G.; Fell, J.W.

    2004-01-01

    Phylogenetic trees of the anamorphic basichomycetous yeast genus Trichosporon Behrend, based on molecular sequence analysis of the internal transcribed spacer region and the D1/D2 region of the large subunit of ribosomal (26S) DNA, are presented. This study includes three novel species from soils, T

  13. Evolution and ecophysiology of the industrial producer Hypocrea jecorina (Anamorph Trichoderma reesei and a new sympatric agamospecies related to it.

    Directory of Open Access Journals (Sweden)

    Irina S Druzhinina

    Full Text Available BACKGROUND: Trichoderma reesei, a mitosporic green mould, was recognized during the WW II based on a single isolate from the Solomon Islands and since then used in industry for production of cellulases. It is believed to be an anamorph (asexual stage of the common pantropical ascomycete Hypocrea jecorina. METHODOLOGY/PRINCIPAL FINDINGS: We combined molecular evolutionary analysis and multiple methods of phenotype profiling in order to reveal the genetic relationship of T. reesei to H. jecorina. The resulting data show that the isolates which were previously identified as H. jecorina by means of morphophysiology and ITS1 and 2 (rRNA gene cluster barcode in fact comprise several species: i H. jecorina/T. reesei sensu stricto which contains most of the teleomorphs (sexual stages found on dead wood and the wild-type strain of T. reesei QM 6a; ii T. parareesei nom. prov., which contains all strains isolated as anamorphs from soil; iii and two other hypothetical new species for which only one or two isolates are available. In silico tests for recombination and in vitro mating experiments revealed a history of sexual reproduction for H. jecorina and confirmed clonality for T. parareesei nom. prov. Isolates of both species were consistently found worldwide in pantropical climatic zone. Ecophysiological comparison of H. jecorina and T. parareesei nom. prov. revealed striking differences in carbon source utilization, conidiation intensity, photosensitivity and mycoparasitism, thus suggesting adaptation to different ecological niches with the high opportunistic potential for T. parareesei nom. prov. CONCLUSIONS: Our data prove that T. reesei belongs to a holomorph H. jecorina and displays a history of worldwide gene flow. We also show that its nearest genetic neighbour--T. parareesei nom. prov., is a cryptic phylogenetic agamospecies which inhabits the same biogeographic zone. These two species thus provide a so far rare example of sympatric speciation

  14. Cytotoxicity against insect cells of entomopathogenic fungi of the genera Hypocrella (anamorph Aschersonia): possible agents for biological control.

    Science.gov (United States)

    Watts, Patricia; Kittakoop, Prasat; Veeranondha, Sukitaya; Wanasith, Supakit; Thongwichian, Rossukon; Saisaha, Pattama; Intamas, Suthichai; Hywel-Jones, Nigel L

    2003-05-01

    Extracts from entomopathogenic fungi of the genus Hypocrella (7 species) and its anamorph Aschersonia (11 species) were screened for cytotoxicity to Sf9 and C6/36 insect cells and L929, BHK(21)C13 and HepG2 mammalian cells. Cytotoxic extracts to insect cells (ID50's or = 10 microg ml(-1)) conformed to the criteria of the project and were considered 'lead' extracts for further investigation. 'Leads' were found in two of the Hypocrella species: H. discoidea, and H. tamurai and in three of the Aschersonia species: A. samoensis, A. badia, and A. tamurai. Bioassay-guided fractionation of the cell extract of the fungus A. samoensis BCC 1393 led to the identification of two known anthraquinone dimers, (+)rugulosin (1) and skyrin (2) which showed selective toxicity towards insect cells. (+)Rugulosin (1) and skyrin (2) exhibited strong cytotoxic activity against the insect cell line Sf9 with respective ID50 values of 1.2 and 9.6 microg ml(-1), but showed weak activity toward mammalian cells. This first report of (+)rugulosin (1) and skyrin (2) in A. samoensis is confirmed and demonstrated in another four strains of A. samoensis isolated in Thailand. The preferential cytotoxicity against Sf9 insect cells gives evidence that these insect-pathogenic fungi of the Hypocrella/Aschersonia group might be useful as an agent for pest control.

  15. The transition from a phytopathogenic smut ancestor to an anamorphic biocontrol agent deciphered by comparative whole-genome analysis.

    Science.gov (United States)

    Lefebvre, François; Joly, David L; Labbé, Caroline; Teichmann, Beate; Linning, Rob; Belzile, François; Bakkeren, Guus; Bélanger, Richard R

    2013-06-01

    Pseudozyma flocculosa is related to the model plant pathogen Ustilago maydis yet is not a phytopathogen but rather a biocontrol agent of powdery mildews; this relationship makes it unique for the study of the evolution of plant pathogenicity factors. The P. flocculosa genome of ~23 Mb includes 6877 predicted protein coding genes. Genome features, including hallmarks of pathogenicity, are very similar in P. flocculosa and U. maydis, Sporisorium reilianum, and Ustilago hordei. Furthermore, P. flocculosa, a strict anamorph, revealed conserved and seemingly intact mating-type and meiosis loci typical of Ustilaginales. By contrast, we observed the loss of a specific subset of candidate secreted effector proteins reported to influence virulence in U. maydis as the singular divergence that could explain its nonpathogenic nature. These results suggest that P. flocculosa could have once been a virulent smut fungus that lost the specific effectors necessary for host compatibility. Interestingly, the biocontrol agent appears to have acquired genes encoding secreted proteins not found in the compared Ustilaginales, including necrosis-inducing-Phytophthora-protein- and Lysin-motif- containing proteins believed to have direct relevance to its lifestyle. The genome sequence should contribute to new insights into the subtle genetic differences that can lead to drastic changes in fungal pathogen lifestyles.

  16. Light-dependent roles of the G-protein α subunit GNA1 of Hypocrea jecorina (anamorph Trichoderma reesei

    Directory of Open Access Journals (Sweden)

    Kubicek Christian P

    2009-09-01

    Full Text Available Abstract Background The filamentous ascomycete Hypocrea jecorina (anamorph Trichoderma reesei is primarily known for its efficient enzymatic machinery that it utilizes to decompose cellulosic substrates. Nevertheless, the nature and transmission of the signals initiating and modulating this machinery are largely unknown. Heterotrimeric G-protein signaling represents one of the best studied signal transduction pathways in fungi. Results Analysis of the regulatory targets of the G-protein α subunit GNA1 in H. jecorina revealed a carbon source and light-dependent role in signal transduction. Deletion of gna1 led to significantly decreased biomass formation in darkness in submersed culture but had only minor effects on morphology and hyphal apical extension rates on solid medium. Cellulase gene transcription was abolished in Δgna1 on cellulose in light and enhanced in darkness. However, analysis of strains expressing a constitutively activated GNA1 revealed that GNA1 does not transmit the essential inducing signal. Instead, it relates a modulating signal with light-dependent significance, since induction still required the presence of an inducer. We show that regulation of transcription and activity of GNA1 involves a carbon source-dependent feedback cycle. Additionally we found a function of GNA1 in hydrophobin regulation as well as effects on conidiation and tolerance of osmotic and oxidative stress. Conclusion We conclude that GNA1 transmits a signal the physiological relevance of which is dependent on both the carbon source as well as the light status. The widespread consequences of mutations in GNA1 indicate a broad function of this Gα subunit in appropriation of intracellular resources to environmental (especially nutritional conditions.

  17. 拟细羽束梗孢(新组合)--拟细虫草的无性型%PARAISARIA GRACILIOIDES COMB.NOV., THE ANAMORPH OF CORDYCEPS GRACILIOIDES

    Institute of Scientific and Technical Information of China (English)

    李春如; 明亮; 樊美珍; 李增智

    2004-01-01

    Isaria gracilioides, the anamorph of Cordyceps gracilioides Kobayasi (see also Shimizu, 1994), was described by Kobayasi (1941) on larvae of Cossidae (Coleoptera). The fungus differs from Isaria dubia Delacr., the anamorph of Cordyceps gracilis Durieu & Montagne. The former has much bigger conidia than the latter. Samson & Brady (1983) established a new genus Paraisaria on the base of Isaria dubia which possessed white and loose synnemata consisting of verticillately branched conidiophores with flask-shaped sympodially proliferating phialides. Cordyceps gracilioides and Cordyceps gracilis isolates were successfully collected from China through the method of collecting discharged ascospores from a sterile glass slide and transferring the spores to potato dextrose agar plus 1% peptone (PPDA)(Fan et al., 2001; Li et al., 2002). Recently, Isaria gracilioides was distinguished in the isolate RCEF0921 obtained from the specimen ST000903-01 collected by Y. Y. Chen. The fungus seemed to fit the descriptions of Paraisaria and therefore the following change of the name was made. This is a new record in China.

  18. Trichosporon wieringae sp.nov., an anamorphic basidiomycetous yeast from soil, and assimilation of some phenolic compounds, polysaccharides and other non-conventional carbon sources by saprophytic Trichosporon species

    NARCIS (Netherlands)

    Middelhoven, W.J.

    2004-01-01

    A morphological and physiological description of an anamorphic basidiomycetous yeast species isolated from soil, named Trichosporon wieringae, is presented. The phylogenetic position within the genus, based on nuclear base sequencing of the D1/D2 region of the large subunit of rDNA and of the ITS re

  19. 被毛孢属一新种——长座虫草的无性型%HIRSUTELLA LONGISSIMA SP. NOV., THE ANAMORPH OF CORDYCEPS LONGISSIMA

    Institute of Scientific and Technical Information of China (English)

    李春如; 樊美珍; 黄勃; 李增智

    2001-01-01

    报道长座虫草Cordyceps longissima Kobayasi的无性型为长座被毛孢新种Hirsutella longissima sp. nov.。用子囊孢子分离得到的无性型与子座柄部粘片所见的被毛孢相同;用分离菌在米饭培养基上人工诱发出的子座与天然子座相似,这表明长座被毛孢为长座虫草的无性型。%Cordyceps longissima Kobayasi, collected from Huoshan County of Anhui Province, was reported. Hirsutella longissima isolated from its secondary ascospores was determined to be its anamorph based on microcycle conidiation and induced fruitbody. The typical characteristics of the fungus were described. Some immature stromata formed on an artificial medium. Their shape and color were similar to those of natural stromata.

  20. 圆盘菌科无性型有性生殖能力评估%The evaluation of sexual reproduction capacity of orbiliaceous anamorphs

    Institute of Scientific and Technical Information of China (English)

    郭建伟; 泽芬; 李成云; 张克勤

    2009-01-01

    In this paper, the sexual reproduction capacity of Orbiliaceous anamorphs derived from ascospores and asexual conidia were evaluated. The results demonstrated that sexual reproduction capacity between isolates derived from ascospores and conidia were different, and at least partially determined by their genetic differences. Our results support the hypothesis that species of asexual fungi in this family were probably derived from pleomorphic holomorphs by gradually losing their ability to reproduce sexual.%本文评估了分离自子囊孢子和分生孢子的圆盘菌科无性型有性生殖能力.结果表明,由了囊孢子和分生孢子萌发获得的菌株的有性生殖能力具有显著差异,这可能决定于不同的遗传特性.该试验支持了一种假说:仅能进行无性生殖的无性型菌株,很可能来源于逐渐丧失了有性生殖能力的全型菌株.

  1. The Transition from a Phytopathogenic Smut Ancestor to an Anamorphic Biocontrol Agent Deciphered by Comparative Whole-Genome Analysis[W][OPEN

    Science.gov (United States)

    Lefebvre, François; Joly, David L.; Labbé, Caroline; Teichmann, Beate; Linning, Rob; Belzile, François; Bakkeren, Guus; Bélanger, Richard R.

    2013-01-01

    Pseudozyma flocculosa is related to the model plant pathogen Ustilago maydis yet is not a phytopathogen but rather a biocontrol agent of powdery mildews; this relationship makes it unique for the study of the evolution of plant pathogenicity factors. The P. flocculosa genome of ∼23 Mb includes 6877 predicted protein coding genes. Genome features, including hallmarks of pathogenicity, are very similar in P. flocculosa and U. maydis, Sporisorium reilianum, and Ustilago hordei. Furthermore, P. flocculosa, a strict anamorph, revealed conserved and seemingly intact mating-type and meiosis loci typical of Ustilaginales. By contrast, we observed the loss of a specific subset of candidate secreted effector proteins reported to influence virulence in U. maydis as the singular divergence that could explain its nonpathogenic nature. These results suggest that P. flocculosa could have once been a virulent smut fungus that lost the specific effectors necessary for host compatibility. Interestingly, the biocontrol agent appears to have acquired genes encoding secreted proteins not found in the compared Ustilaginales, including necrosis-inducing-Phytophthora-protein- and Lysin-motif- containing proteins believed to have direct relevance to its lifestyle. The genome sequence should contribute to new insights into the subtle genetic differences that can lead to drastic changes in fungal pathogen lifestyles. PMID:23800965

  2. Comparison of use of phenotypic and genotypic characteristics for identification of species of the anamorph genus Candida and related teleomorph yeast species.

    Science.gov (United States)

    Latouche, G N; Daniel, H M; Lee, O C; Mitchell, T G; Sorrell, T C; Meyer, W

    1997-12-01

    A total of 49 type and neotype isolates and 32 clinical isolates of the anamorph genus Candida and related teleomorph genera were obtained from different culture collections and clinical laboratories. Isolates were subjected to two phenotypic methods of identification, Vitek yeast biochemical card (YBC) and API ID 32C, both based on carbohydrate assimilation, and one genotypic method, PCR fingerprinting, based on the detection of DNA polymorphisms between minisatellite-specific sequences with the primer M13 (5' GAGGGTGGCGGTTCT 3'). The correct identification of a strain at the Centraalbureau voor Schimmelcultures was used as the gold standard for the identification of an isolate. When the study was restricted to species included in the respective biochemical databases, the Vitek YBC and API ID 32C systems performed adequately with positive identification rates of 87.3 and 76.8%, respectively. When uncommon species were added to the study, several of which are not included in the databases, the identification efficiencies were 76.5 and 77.5%, respectively. By comparison, all isolates were correctly identified by PCR fingerprinting, with 63 reference species profiles in the databank. Sufficient polymorphisms among the total set of banding patterns were observed, with adequate similarity in the major patterns obtained from a given species, to allow each isolate to be assigned unambiguously to a particular species. In addition, variations in minor bands allowed for differentiation to the strain level. PCR fingerprinting was found to be rapid, reproducible, and more cost-effective than either biochemical approach. Our results provide reference laboratories with an improved identification method for yeasts based on genotypic rather than phenotypic markers.

  3. Description of Taphrina antarctica f.a. sp. nov., a new anamorphic ascomycetous yeast species associated with Antarctic endolithic microbial communities and transfer of four Lalaria species in the genus Taphrina.

    Science.gov (United States)

    Selbmann, Laura; Turchetti, Benedetta; Yurkov, Andrey; Cecchini, Clarissa; Zucconi, Laura; Isola, Daniela; Buzzini, Pietro; Onofri, Silvano

    2014-07-01

    In the framework of a large-scale rock sampling in Continental Antarctica, a number of yeasts have been isolated. Two strains that are unable to grow above 20 °C and that have low ITS sequence similarities with available data in the public domain were found. The D1/D2 LSU molecular phylogeny placed them in an isolated position in the genus Taphrina, supporting their affiliation to a not yet described species. Because the new species is able to grow in its anamorphic state only, the species Taphrina antarctica f.a. (forma asexualis) sp. nov. has been proposed to accommodate both strains (type strain DBVPG 5268(T), DSM 27485(T) and CBS 13532(T)). Lalaria and Taphrina species are dimorphic ascomycetes, where the anamorphic yeast represents the saprotrophic state and the teleomorph is the parasitic counterpart on plants. This is the first record for this genus in Antarctica; since plants are absent on the continent, we hypothesize that the fungus may have focused on the saprotrophic part of its life cycle to overcome the absence of its natural host and adapt environmental constrains. Following the new International Code of Nomenclature for Algae, Fungi and Plants (Melbourne Code 2011) the reorganization of Taphrina-Lalaria species in the teleomorphic genus Taphrina is proposed. We emend the diagnosis of the genus Taphrina to accommodate asexual saprobic states of these fungi. Taphrina antarctica was registered in MycoBank under MB 808028.

  4. Use of Hypocrea jecorina (anamorph Trichoderma reesei) as a model system for Trichoderma biocontrol of Pythium blight identifies new targets for genetic strain improvement

    Institute of Scientific and Technical Information of China (English)

    Seidl V; Schmoll M; Scherm B; Balmas V; Seiboth B; Migheli Q; Kubicek C P

    2004-01-01

    @@ Biocontrol by Trichoderma has been studied mainly with selected isolates of T. harzianum, T.atroviride and T. asperellum, which are members of sections Pachybasium and Trichoderma. In contrast, species from section Longibrachiatum have only rarely been studied. On the other hand, one taxon from this section-Hypocrea jecorina (anamorph: Trichoderma reesei)-has been widely used for the production of cellulolytic and hemicellulolytic enzymes and recombinant proteins. As far as Trichoderma is concerned, molecular genetic methods and tools are most advanced in H. jecorina,and its genome has recently been fully sequenced, thus making this taxon a model organism for the genus. Here we will demonstrate that H. jecorina is able to antagonize plant pathogenic fungi in plate confrontation tests, and can protect tomato and cucumber plants against Pythium ultimum blight.Using this as a model case, we made use of available H. jecorina mutants to investigate (a) whether carbon catabolite repression via the Cre1-regulator protein has an impact on biocontrol, and (b)whether cellulase gene expression is necessary for biocontrol of P. ultimum. In the first case, plate confrontation tests and in planta experiments yielded opposite results, i.e. while a Cre1 mutant was more active in antagonization of fungi on plates, the survival rates of P. ultimum-inoculated cucumber plants was lower than with the H. jecorina wild-type strain. Mutants of H. jecorina,unable to form cellulases, were still able to antagonize fungi on plates and provided similar protection of tomatos against P. ultimum as the wild type, indicating that the pronounced biocontrol ability of H.jecorina against fungi with cellulose-containing cell-walls is not due to its high cellulolytic activity. A strain disrupted in the light-modulator gene envoy (Schmoll et al., ms submitted) exhibited in planta biocontrol activity strongly exceeding that of the wild-type strain, thereby providing a first link between Trichoderma

  5. 不同产地冬虫夏草无性型的形态观察%The morphology observation of anamorph of Ophiocordyceps sinensis from different origins

    Institute of Scientific and Technical Information of China (English)

    毛雄民; 赵世明; 曹莉; 颜珣; 韩日畴

    2013-01-01

    Ophiocordyceps sinensis is a well-known and valued traditional Chinese medicine in China.It is a composite consisting of the stromata of the fungus,O.sinensis (Berk.) Sung.(Family:Ophiocordycipitaceae) parasitized on the larva of some species of insects (Family:Hepialidae),and the dead caterpillar.The strains of anamorph of O.sinensis were isolated directly from nature-O.sinensis samples from Tibet,Qinghai,Yunnan and Sichuan.The morphology of the mycelia and conidia was observed by SEM after molecular identification.The results showed that all the isolates were confirmed to be Hirsutella sinensis.Hirsutella sinensis could produce polymorphic conidia of subglobose,elliptical or kidney shapes (sizes about 1.36-13.76 μm × 1.03-9.18 μm).The conidial sizes of the isolates from different origins in the same medium were in order Yunnan > Tibet > Qinghai > Sichuan.The conidial shapes and sizes of the isolates from the same origins in different medium were not significantly different.%冬虫夏草为我国传统的名贵中草药,是冬虫夏草真菌侵染蝙蝠蛾科昆虫幼虫而形成的僵虫与真菌子座的复合体.本文从西藏、青海、云南和四川采集的新鲜冬虫夏草样品中分离和培养无性型菌株,进行分子鉴定,观察菌落和菌丝与分子孢子的显微形态.结果表明分离到的菌株为冬虫夏草无性型-中国被毛孢;扫描电镜下观察到H型菌丝融合现象;冬虫夏草无性型可产生包括肾形、椭圆形或长椭圆形及近球形的多态分生孢子,其大小为1.36~13.76 μm×1.03~9.18 μm;在同一培养基上分生孢子大小与菌株的产地有关,从大到小依次是云南、西藏、青海、四川采集的菌株;同一种菌株在不同培养基上产生的分生孢子形态及大小差异不明显.

  6. 卓越的画质,专为发烧级玩家而设计 Schneider(施耐德)CINE-DIGITAR ANAMORPHIC 1.33×XL

    Institute of Scientific and Technical Information of China (English)

    王韦

    2010-01-01

    为了满足想消除投影画面上那两条粗大的黑边、追求更广阔视野又不愿意牺牲接近1/3投影机像素的挑剔玩家,2.35:1的变形镜头出现了。但是许多玩家发现使用了变形镜头之后,对画面的亮度、锐度、清晰度的损失实在是非常严重,于是进一步催生了高价高品质的顶级变形镜头的诞生。其中由德国著名光学大厂Schneider Optics(施耐德光学)所推出的CINE-DIGITARANAMORPHIC 1.33×系列就是高素质变形镜头的代表,绝佳的画面畸变的控制,优秀的色彩还原能力,都是普通变形镜头难以望其项背的。而来到编辑部视听室的则是最高端的CINE-DIGITAR ANAMORPHIC 1.33×XL。

  7. Analgesic Substance from The Anamorph of Cordyceps gunnii(Berk.)Berk.%古尼虫草Cordyceps gunnii(Berk.)Berk.无性型的镇痛物质研究

    Institute of Scientific and Technical Information of China (English)

    梁宗琦; 常胜军; 刘爱英

    2004-01-01

    A sort of analgesic substance is extracted from the mycelia of Paecilomyces gunnii Liang,an anamorph of Cordyceps. Some physical and chemical characters of this substance are elucidated. The analgesic substance from the mycelia of Paecilomyces gunnii Liang & Liu is water soluble. The best extractive method from the mycelia is soaking-heating extraction. The analgesic substance can be solved in 90% alcohol ,but can't be solved in ether or methanol.The molecular weight of the analgestic substance from Paecilomyces gunnii Liang & Liu is 12 000~14 000 Da. Infrared spectrum of the analgesic substance shows that it doesn't contain the structure of Dolantin's group.The analgesic substance is stable in pH 11时,镇痛作用强度下降.镇痛组分有较好的热稳定性.在100 ℃加热1 h,它对冰醋酸所致的小鼠扭体抑制率仍为100%;培养基组成和培养温度在所试条件下,不仅影响菌丝的生物量,而且影响菌丝浸出物的镇痛效果.

  8. Molecular Research on the Anamorph of Three Strains of Cordyceps taishanensis%3株泰山虫草无性型的分子生物学研究

    Institute of Scientific and Technical Information of China (English)

    赵品苍; 曲志才; 王波; 苏延友

    2012-01-01

    [目的]研究3株泰山虫草无性型的分子生物学特性.[方法]以野生泰山虫草子实体分离出的3个菌株为材料,通过对rDNAITS区的扩增、克隆和测序来鉴定虫草的无性型.[结果]3个菌株不是同1种,COA1为蛹草拟青霉,COA2为球孢白僵菌,COA3为细脚棒束孢,由此推断泰山虫草只是以地理位置得名.[结论]研究了3株泰山虫草无性型的分子生物学特性.%[ Objective ] To identify the anamorph of Cordyceps taishanensis. [ Method ] The rDNA ITS fragment was amplified, cloned and se-quenced using total DNA extracted from three strains of COA1, COA2 and COA3. [ Result] COA1 was Paecilomyces militaris, COA2 was Beauveria bassina and COA3 was Isaria tenuipes. The findings indicated that Cordyceps taishanensis was named based on the geographical po-sition. [ Conclusion] Molecular biological characteristics of three tested strains are studied.

  9. Diversidad de Anamorfos de Ascomycota en bosques nativos de Celtis tala (Ulmaceae en la Provincia de Buenos Aires, Argentina Diversity of anamorphic fungi in Celtis tala (Ulmaceae native forest from Buenos Aires province, Argentina

    Directory of Open Access Journals (Sweden)

    Natalia Allegrucci

    2007-07-01

    Full Text Available En el presente trabajo se analizó la diversidad de microhongos que constituyen la comunidad fúngica saprótrofa (anamorfos de Ascomycota presente en hojarasca y suelo en bosques nativos de Celtis tala (tala en el partido de Magdalena, provincia de Buenos Aires. Se realizaron muestreos estacionales durante dos años (2004-2005 y se aislaron e identificaron los hongos presentes. Se calculó la frecuencia relativa porcentual de cada taxón; estos datos fueron utilizados para evaluar la diversidad fúngica mediante el cálculo del Indice de Diversidad de Shanon y Weaver ( H '. Para discriminar las comunidades fúngicas se utilizó el coeficiente de similitud de Sorensen ( S '. Se identificaron 104 taxones de anamorfos de Ascomycota, de los cuales 54 fueron aislados de hojarasca y 58 de suelo, registrándose 8 especies en común para ambos tipos de muestra. De las especies compartidas, las que presentaron frecuencias más altas para hojarasca fueron las menos representadas en suelo y viceversa. El resultado del cálculo del coeficiente de similitud de Sorensen fue de 0.14, indicando que la comunidad de hongos saprótrofos que crece en la hojarasca de tala está integrada por diferentes especies a las que caracterizan la micobiota del suelo de la misma área. No se encontraron diferencias significativas en el índice de diversidad.In this paper we analyze the diversity of species that compose the saprotrophic (anamorphic Ascomycota fungi community in the leaf litter and soil in Celtis tala forest in Magdalena , located in the province of Buenos Aires . Seasonal samples were taken during two years (2004-2005, and fungi were isolated and identified. The relative frequencies of fungi were calculated. To compare the similarity of the fungi composition between different habitats, Sorensen's index of similarity (S´ was applied. The frequencies of occurrence of these fungi were recorded and Shannon Weaver index (H´ was applied to evaluate fungal

  10. Diffusion studies of anamorphic GRIN lenses

    Science.gov (United States)

    Sekh, Md. Asraful; SoodBiswas, Nisha; Sarkar, Samir; Basuray, Amitabha

    2016-12-01

    The present paper reports the diffusion study of cylindrical GRIN rod with elliptical cross section, developed by ion exchange process. The diffusion equation takes the form of Mathieu equations when transform into elliptic coordinate system and the solutions are derived in terms of angular and radial Mathieu functions. Computations of eigenvalues and expansion coefficients as well as angular and radial Mathieu functions are made which shows good agreement with the existing results. Simpler expression for ionic concentration is derived using asymptotic formulae of the functions which are used for final computation of ionic concentration of diffusing cations in elliptic GRIN. The plot of change in concentration versus diffusion depth along different directions approximately correlates with the results obtained by an earlier experimental study.

  11. Molecular and phenotypic characterization of anamorphic fungi

    OpenAIRE

    2011-01-01

    Los hongos anamórficos son un vasto grupo dentro del reino Fungi, caracterizado por reproducirse asexualmente. Aunque la mayoría de ellos son saprófitos, un gran número de especies atacan plantas y animales, incluido el ser humano. Con el fin de contribuir al conocimiento de la diversidad y distribución geográfica de los hongos anamórficos, en la presente tesis se realizó una caracterización fenotípica y molecular de aislamientos ambientales y clínicos de estos hongos. Mediante un estudio de ...

  12. Onychomycosis caused by Scytalidium dimidiatum. Report of two cases. Review of the taxonomy of the synanamorph and anamorph forms of this coelomycete Onicomicose por Scytalidium dimidiatum. Registro de dois casos. Revisão da taxonomia das formas sinanamorfas e anaforma deste celomiceto

    Directory of Open Access Journals (Sweden)

    Carlos da Silva LACAZ

    1999-09-01

    Full Text Available The authors report two cases of onychomycosis in the dystrophic form, one of them involving an HIV-positive patient, provoked by Scytalidium dimidiatum, previously called Scytalidium lignicola. The subject is reviewed from the taxonomic viewpoint, considering the anamorph Hendersonula toruloidea as a synonym of Nattrassia mangiferae, and having Scytalidium dimidiatum as the major synanamorph. According to many mycologists, Scytalidium hyalinum may be a separate species or a hyaline mutant of Scytalidium dimidiatum. Scytalidium lignicola Pesante 1957 was considered to be the type-species of the genus by ELLIS (197113 and later to be a "conidial state" of Hendersonula toruloidea by the same author, today known as Nattrassia mangiferae. The microorganism lives only on the roots of certain plants (mainly Platanus and Pinus. It produces pycnidia and is not considered to be a pathogen, although it is considered as a possible emerging agent capable of provoking opportunistic fungal lesions. The importance of this topic as one of the most outstanding in fungal taxonomy, so likely to be modified over time, as well as its interest in the field of dermatologic mycology, are emphasized.Os Autores registraram dois casos de onicomicose sob forma distrófica, sendo um em paciente HIV-positivo, provocados pelo Scytalidium dimidiatum, no passado considerado como Scytalidium lignicola. Fazem uma revisão da matéria sob o ponto de vista taxonômico, considerado o anamorfo Hendersonula toruloidea como sinônimo de Nattrassia mangiferae, tendo como sinanamorfo principal o Scytalidium dimidiatum. Scytalidium hyalinum seria para muitos micologistas espécie à parte ou mutante hialina do Scytalidium dimidiatum. Scytalidium lignicola Pesante 1957, foi considerada por ELLIS (197113 como espécie-tipo do gênero e mais tarde (197614, pelo mesmo Autor como "estado conidiano" de Hendersonula toruloidea, atualmente Nattrassia mangiferae. Vive somente em raízes de

  13. Correcting for off-centre anamorphic, non-planar projection

    DEFF Research Database (Denmark)

    Hansen, Per Skafte; Sørensen, Svend Erik Børre; Mærsk-Møller, Ole Chr

    1996-01-01

    A model of projecting a slide on to the dome in the Tycho Brahe Planetarium in Copenhagen using a superwide angel projector is derived from measurements in the dome. As a result of the model, computer generated pictures can be "counter destorted" prior to the projection. In this way correct...

  14. Riqueza de fungos anamorfos na serapilheira de Manilkara maxima, Parinari alvimii e Harleyodendron unifoliolatum na Mata Atlântica do Sul da Bahia Richness of anamorphic fungi on the litter of Manilkara maxima, Parinari alvimii and Harleyodendron unifoliolatum in the Atlantic Forest of southern Bahia

    Directory of Open Access Journals (Sweden)

    Dilze Maria Argôlo Magalhães

    2011-12-01

    unifoliolatum Cowan was 75.0%, Manilkara maxima Pennington 57.7% and Parinari alvimii Prance 42.3%. There was similarity between plants and between areas. The frequency of most fungi was sporadic. This pioneer work on these trees of the Atlantic Forest of southern Bahia contributes to the knowledge of the anamorphic fungi existing in this biologically rich biome.

  15. Polyphasic taxonomy of the heat resistant ascomycete genus Byssochlamys and its Paecilomyces anamorphs

    NARCIS (Netherlands)

    Samson, R.A.; Houbraken, J.; Varga, J.; Frisvad, J.C.

    2009-01-01

    Byssochlamys and related Paecilomyces strains are often heat resistant and may produce mycotoxins in contaminated pasteurised foodstuffs. A comparative study of all Byssochlamys species was carried out using a polyphasic approach to find characters that differentiate species and to establish accurat

  16. Polyphasic taxonomy of the heat resistant ascomycete genus Byssochlamys and its Paecilomyces anamorphs

    DEFF Research Database (Denmark)

    Samson, R.A.; Houbraken, J.; Varga, J.

    2009-01-01

    - and macromorphological characters are valuable for identification purposes, including the shape and size of conidia and ascospores, presence and ornamentation of chlamydospores, growth rates on MEA and CYA and acid production on CREA. A dichotomous key is provided for species identification based on phenotypical...

  17. Extensive colonization of apples by smut anamorphs causes a new posthavest disorder

    NARCIS (Netherlands)

    Boekhout, T.; Gildemacher, P.R.; Theelen, B.; Müller, W.H.; Heijne, B.; Lutz, M.

    2006-01-01

    Colonization of apples by ballistoconidium-forming fungi causes a new disorder, here named 'white haze'. White haze may occur in mild form in the field, but only becomes problematic after Ultra-Low Oxygen storage, and, therefore, may be considered as a postharvest disorder. All isolates, obtained us

  18. The Encounter of the Emblematic Tradition with Optics. The Anamorphic Elephant of Simon Vouet.

    Science.gov (United States)

    Gómez López, Susana

    2016-01-01

    In his excellent work Anamorphoses ou perspectives curieuses (1955), Baltrusaitis concluded the chapter on catoptric anamorphosis with an allusion to the small engraving by Hans Tröschel (1585-1628) after Simon Vouet's drawing Eight satyrs observing an elephant reflected on a cylinder, the first known representation of a cylindrical anamorphosis made in Europe. This paper explores the Baroque intellectual and artistic context in which Vouet made his drawing, attempting to answer two central sets of questions. Firstly, why did Vouet make this image? For what purpose did he ideate such a curious image? Was it commissioned or did Vouet intend to offer it to someone? And if so, to whom? A reconstruction of this story leads me to conclude that the cylindrical anamorphosis was conceived as an emblem for Prince Maurice of Savoy. Secondly, how did what was originally the project for a sophisticated emblem give rise in Paris, after the return of Vouet from Italy in 1627, to the geometrical study of catoptrical anamorphosis? Through the study of this case, I hope to show that in early modern science the emblematic tradition was not only linked to natural history, but that insofar as it was a central feature of Baroque culture, it seeped into other branches of scientific inquiry, in this case the development of catoptrical anamorphosis. Vouet's image is also a good example of how the visual and artistic poetics of the baroque were closely linked--to the point of being inseparable--with the scientific developments of the period.

  19. DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW

    Directory of Open Access Journals (Sweden)

    Natalia Allegrucci

    2009-01-01

    Full Text Available En Argentina se reconocen ocho regiones de bosques nativos: bosque Andino-Patagónico, Talares de la Región Pampeana, Parque Chaqueño, Selva Misionera, Selva Tucumano-Boliviana, Monte, Espinal y Bosques Pluviales de los ríos Paraguay, Paraná y Uruguay. El objetivo de este trabajo ha sido reunir y revisar la información sobre la biodiversidad de microhongos saprótrofos (Ascomycetes anamórficos citados en los bosques nativos de Argentina, desde las primeras colecciones de Spegazzini hasta el presente. De las regiones anteriormente mencionadas los bosques Andino-Patagónicos, Bosques Pluviales de los ríos Paraguay, Paraná y Uruguay y recientemente los Talares de la provincia de Buenos Aires son aquellos donde se han realizado más exploraciones de microhongos saprótrofos. Por otro lado se obtuvieron muy pocos registros de especies fúngicas del resto de los bosques; para la región de Monte en particular no se han realizado hasta el presente estudios de hongos anamórficos, por lo cual no se cuenta con registros de especies anamórficas de Ascomycetes. Como resultado de una revisión bibliográfica exhaustiva, se registraron 344 especies, de las cuales 81 (23,5% son nuevas especies. Este trabajo pone de manifiesto la falta de exploraciones de áreas de importancia en nuestro país, y muestra la necesidad de incrementar estos estudios.

  20. Fungal infection of mantis shrimp (Oratosquilla oratoria) caused by two anamorphic fungi found in Japan.

    Science.gov (United States)

    Duc, Pham Minh; Hatai, Kishio; Kurata, Osamu; Tensha, Kozue; Yoshitaka, Uchida; Yaguchi, Takashi; Udagawa, Shun-ichi

    2009-05-01

    Two fungal pathogens of the mantis shrimp (Oratosquilla oratoria) in Yamaguchi and Aichi Prefectures, Japan are described as the new species Plectosporium oratosquillae and Acremonium sp. (a member of the Emericellopsis marine clade). Both fungi infect the gills of the mantis shrimp, which become brown or black due to melanization. The former species is characterized by its slow growth on artificial seawater yeast extract peptone glucose (PYGS) agar, pale yellow to pale orange or grayish yellow colonies, short cylindrical solitary phialides with a wavy tip, and one-celled ellipsoidal conidia. Although lacking the two-celled conidia demonstrated by the type species Plectosporium tabacinum, the taxonomic placement of the new species was confirmed by DNA sequence analysis of the internal transcribed spacer (ITS) region of ribosomal DNA (ITS1, 5.8S rDNA and ITS2). Acremonium sp., the other causal pathogen, differs from P. oratosquillae by its fast growth on PYGS agar, pale orange to salmon-colored colonies, long, slender conidiophores consisting of solitary phialides with tips lacking an undulate outline, and typically cylindrical conidia. Analysis of ITS and beta-tubulin gene sequences placed this fungus within the phylogenetically distinct Emericellopsis (anam. Acremonium) marine clade. Various physiological characteristics of both pathogens were also investigated. This is the first report of a fungal infection found on the mantis shrimp in Japan.

  1. Two new anamorphic yeasts, Candida thailandica sp. nov. and Candida lignicola sp. nov., isolated from insect frass in Thailand.

    Science.gov (United States)

    Jindamorakot, Sasitorn; Limtong, Savitree; Yongmanitchai, Wichien; Tuntirungkij, Manee; Potacharoen, Wanchern; Kawasaki, Hiroko; Nakase, Takashi

    2007-12-01

    Two new yeast strains of the genus Candida were isolated from insect frass collected in Khao-Yai National Park, Nakhonrachasima, Thailand. Based on the morphological, physiological and chemotaxonomic characteristics, and sequence analysis of the D1/D2 domain of 26S rRNA gene, these two strains were found to represent two distinct undescribed species and were named Candida thailandica sp. nov. (ST-17 = BCC 7717(T) = NBRC 102562(T)=CBS 10 610) and Candida lignicola sp. nov. (ST-33 = BCC 7733(T) = NBRC 102564(T) = CBS 10612). In the D1/D2 domain of 26S rRNA gene, C. thailandica (GeneBank accession no. AY228491) differs from Candida tsuchiyae, the nearest species, in 66 nucleotide substitutions (10%) and C. lignicola (GeneBank accession no. AY845350) differs from Candida coipomoensis, the nearest species, in nine nucleotides (1.6%). These two new species are clearly distinguished from their closest species by the assimilation of several carbon compounds.

  2. Rhodotorula subericola sp. nov., an anamorphic basidiomycetous yeast species isolated from bark of Quercus suber (cork oak).

    Science.gov (United States)

    Belloch, C; Villa-Carvajal, M; Alvarez-Rodríguez, M L; Coque, J J R

    2007-07-01

    Two yeasts strains, Y-31(T) and Y-20B, pertaining to a previously unknown yeast species were isolated from bark of cork oak in Spain. Physiological characterization revealed a pattern of assimilation of carbon and nitrogen compounds compatible with members of the genus Rhodotorula. From sequence analysis of the D1/D2 region of the 26S rRNA gene, Rhodotorula cycloclastica and Rhodotorula philyla were related to the unknown species. Phylogenetic reconstruction based on the D1/D2 region of the 26S rRNA gene showed that the novel species clustered in a branch together with R. cycloclastica. The name Rhodotorula subericola sp. nov. is proposed, with isolate Y-31(T) (=CECT 11976(T)=CBS 10442(T)) the type strain of this novel taxon in the Microbotryum lineage, subclass Microbotryomycetidae, class Urediniomycetes of basidiomycetous yeasts.

  3. Characterization of a linear DNA plasmid from the filamentous fungal plant pathogen Glomerella musae [Anamorph: Colletotrichum musae (Berk. and Curt.) arx.

    Science.gov (United States)

    Freeman, S.; Redman, R.S.; Grantham, G.; Rodriguez, R.J.

    1997-01-01

    A 7.4-kilobase (kb) DNA plasmid was isolated from Glomerella musae isolate 927 and designated pGML1. Exonuclease treatments indicated that pGML1 was a linear plasmid with blocked 5' termini. Cell-fractionation experiments combined with sequence-specific PCR amplification revealed that pGML1 resided in mitochondria. The pGML1 plasmid hybridized to cesium chloride-fractionated nuclear DNA but not to A + T-rich mitochondrial DNA. An internal 7.0-kb section of pGML1 was cloned and did not hybridize with either nuclear or mitochondrial DNA from G. musae. Sequence analysis revealed identical terminal inverted repeats (TIR) of 520 bp at the ends of the cloned 7.0-kb section of pGML1. The occurrence of pGML1 did not correspond with the pathogenicity of G. musae on banana fruit. Four additional isolates of G. musae possessed extrachromosomal DNA fragments similar in size and sequence to pGML1.

  4. 虫草及其无性型中的抗肿瘤细胞活性成分%Anti- tumor components from Cordyceps and their anamorph

    Institute of Scientific and Technical Information of China (English)

    何亚琼; 胡丰林; 王利; 樊美珍

    2008-01-01

    较系统地总结了目前在虫草及其无性型中发现的抗肿瘤细胞活性成分.其中冬虫夏草、蛹虫草、大团囊虫草、单侧虫草、戴氏虫草和拟蛹虫草等虫草以及它们的无性型蛹拟青霉、细脚拟青霉、金龟子绿僵菌和球孢白僵菌等虫生真菌代谢物中抗肿瘤细胞活性成分,其结构包括多糖类、甾醇类、含氮化合物和杂环化合物等多个类型.

  5. 双梭孢虫草无性型的人工栽培%Artificial Cultivation of the Anamorph of Cordyceps bifusispora

    Institute of Scientific and Technical Information of China (English)

    张延威; 韩燕峰; 吕明

    2013-01-01

    采用单因素法研究基础培养基、碳源、氮源和光照对双梭孢虫草无性型子实体产生的影响.结果表明,小麦培养基适合用作双梭孢虫草产子实体的培养基;碳源中的葡萄糖和氮源中的酵母膏以及低光照条件有利于子实体的产生.

  6. Cryptococcus allantoinivorans sp.nov., an anamorphic basidiomycetous yeast (Tremellales) physiologicallt resembling other species of the Cryptococcus laurentii complex that degrade polysaccharides and C2 compounds

    NARCIS (Netherlands)

    Middelhoven, W.J.

    2005-01-01

    A novel Cryptococcus species is proposed to accommodate a yeast strain (CBS 9604) able to assimilate allantoin as sole carbon source, a characteristic very uncommon among yeasts. By traditional methods, the strain could not be distinguished from Cryptococcus laurentii, but nucleotide sequences of th

  7. Cryptococcus allantoinivorans sp.nov., an anamorphic basidiomycetous yeast (Tremellales) physiologically resembling other species of the Cryptococcus laurentii complex that degrade polysaccharides and C2 compounds.

    Science.gov (United States)

    Middelhoven, Wouter J

    2005-02-01

    A novel Cryptococcus species is proposed to accommodate a yeast strain (CBS 9604) able to assimilate allantoin as sole carbon source, a characteristic very uncommon among yeasts. By traditional methods, the strain could not be distinguished from Cryptococcus laurentii, but nucleotide sequences of the D1D2 region of the large subunit (26S) and of the ITS region of ribosomal DNA showed relationship to the Bulleromyces clade of the genus Cryptococcus (order Tremellales) with some Tremella spp. as the closest relatives. A traditional morphological and physiological description of the strain is given. Data on the assimilation of some C2 compounds and polysaccharides are provided and compared with those of other type strains of novel species of the C. laurentii complex.

  8. Cryptococcus allantoinivorans sp.nov., an anamorphic basidiomycetous yeast (Tremellales) physiologicallt resembling other species of the Cryptococcus laurentii complex that degrade polysaccharides and C2 compounds

    OpenAIRE

    Middelhoven, W.J.

    2005-01-01

    A novel Cryptococcus species is proposed to accommodate a yeast strain (CBS 9604) able to assimilate allantoin as sole carbon source, a characteristic very uncommon among yeasts. By traditional methods, the strain could not be distinguished from Cryptococcus laurentii, but nucleotide sequences of the D1D2 region of the large subunit (26S) and of the ITS region of ribosomal DNA showed relationship to the Bulleromyces clade of the genus Cryptococcus (order Tremellales) with some Tremella spp. a...

  9. MOLECULAR IDENTIFICATION OF THE ANAMORPH STAGE OF CORDYCEPS GUNNII%古尼虫草无性型的分子鉴别

    Institute of Scientific and Technical Information of China (English)

    张泽文; 傅岚; 陈作红

    2005-01-01

    采用PCR技术,以rDNA的ITS区为分子指标,对古尼虫草Cordyceps gunnii的有性和无性阶段进行比较分析,从分子水平上证明古尼虫草的无性阶段是古尼拟青霉Paecilomycesgunnii.

  10. 西藏冬虫夏草无性型的分子生物学研究%MOLLECULAR STUDY ON ANAMORPH OF CORDYCEPS SINENSIS FROM TIBET

    Institute of Scientific and Technical Information of China (English)

    章卫民; 李泰辉; 陈月琴; 屈良鹄; 钟韩; 徐学平

    2002-01-01

    从西藏采集的冬虫夏草子实体中分离出3个菌株C3、C4、C5,通过培养特征的研究以及采用分子生物学方法,以rDNA ITS区为分子指标,与冬虫夏草[Cordyceps sinensis(Berk.)Sacc.)]的有性世代及中国被毛孢(Hirsutella sinensis Liu,Guo,Yu&Zeng)进行比较分析,发现C4的培养特征与C、C5完全不同,其序列与冬虫夏草的相似率为93%,与中国被毛孢的相似率为94%,而C3、C5与冬虫夏草的相似率很低(分别为55%和69%),从而证明C4是西藏冬虫夏草的无性型,为中国被毛孢.

  11. Cryptococcus ibericus sp. nov., Cryptococcus aciditolerans sp. nov. and Cryptococcus metallitolerans sp. nov., a new ecoclade of anamorphic basidiomycetous yeast species from an extreme environment associated with acid rock drainage in São Domingos pyrite mine, Portugal.

    Science.gov (United States)

    Gadanho, Mário; Sampaio, José Paulo

    2009-09-01

    In this report, we describe three novel asexual basidiomycetous yeast species, Cryptococcus aciditolerans sp. nov. (type strain CBS 10872T=SDY 081T), Cryptococcus ibericus sp. nov. (type strain CBS 10871T=SDY 022T) and Cryptococcus metallitolerans sp. nov. (type strain CBS 10873T=SDY 190T), which were isolated from acid rock drainage collected at the São Domingos mine in southern Portugal. Phylogenetic analysis of molecular sequence data indicated that the novel species belong to the order Filobasidiales of the class Tremellomycetes and form a well-separated clade, next to Cryptococcus gastricus and Cryptococcus gilvescens. Since the novel species also share a peculiar ecology, being able to thrive under extreme environmental conditions characterized by very low pH and high concentrations of heavy metals, we designate this combination of phylogenetic and ecological characteristics as an ecoclade.

  12. 冬虫夏草无性型-中国被毛孢固态发酵条件的初步研究%Studies on solid-state fermentation condition of Hirsutella sinensis anamorph of Cordyceps sinensis

    Institute of Scientific and Technical Information of China (English)

    葛飞; 桂琳; 李春如; 樊美珍

    2009-01-01

    采用以麦角甾醇含量为指标间接测定固态发酵产物生物量的方法,对冬虫夏草无性型-中国被毛孢的固态发酵条件进行了研究.正交试验结果表明固态发酵最佳培养基组成为:大米5g,玉米粉2g,蚕蛹粉1g,麸皮2g;单因素试验结果表明:当培养温度20 ℃、料水比1∶ 1.5、料层厚度2 cm、无光照时对菌体生长较为有利.发酵条件优化后,菌丝体中麦角甾醇的含量可达0.5911mg/g,比优化前提高了38.6%.

  13. 冬虫夏草子囊孢子萌发及其无性型观察%Investigation on Microcycle Conidiation of Ascospores and Conidiogenous Structures of Anamorph of Cordyceps sinensis

    Institute of Scientific and Technical Information of China (English)

    刘作易; 梁宗琦; 刘爱英

    2003-01-01

    1995年从云南德钦白马雪山和人支雪山调查收集了新鲜冬虫夏草(Cordyceps sinensis)标本,对其子囊孢子微循环产孢进行了观察,并将其与子囊孢子分离和组织分离菌株的产孢结构进行了比较。结果表明,微循环产孢的产孢结构和分离菌株的产孢结构相似,并与中国被毛孢(Hirsutella sinensis)的产孢结构相似,由此证明冬虫夏草的无性型应是中国被毛孢,中华束丝孢(Synnematium sinensis)为中国被毛孢的同物异名。

  14. A survey of Daldinia species with large ascospores

    DEFF Research Database (Denmark)

    Stadler, M.; Læssøe, Thomas; Simpson, J.A.;

    2004-01-01

    structures, but no conidiogenous structures referable to known xylariaceous anamorphs were observed. D. grandis is reconsidered and viewed as a species of warmer climates in the Americas. Three new species are recognised from new combinations of anamorphic and teleomorphic characters: (1) D. novaezelandiae...

  15. 西藏虫草属真菌生物学特性研究及其无性型rRNA基因ITS间隔区系统发育分析%Study on biological characteristics of Tibetan Cordyceps and Phylogenetic analysis on ITS Spacer of anamorph rRNA gene

    Institute of Scientific and Technical Information of China (English)

    段双全; 陈彬; 张正果; 央宗; 久美; 铁馥荔

    2011-01-01

    研究从新鲜冬虫夏草分离得到的菌株的形态学特征,并验证其对蝙蝠蛾幼虫的侵染能力。对菌株分化的两个亚型菌株进行了生物学特性研究,并对rRNA基因ITS片段进行了系统发育分析。结果表明:①菌株在18±4℃条件下培养两周后,产生乳白色突起,里面有淡黄色孢子,这种情况下的菌体在侵染蝙蝠蛾幼虫后,20天后长出了子实体;②菌株进一步分化成无性型的两个亚型菌株CC-1和CC-3,这两株菌在表观上差异不明显,但是其分生孢子形态上有显著差异。菌株CC-1的分生孢子为线型孢子,而CC-3的分生孢子却为镰刀型孢子,两菌株均存在有%To study morphological characteristics of the separated strain from fresh Cordyceps sinensis was studied to validate the infecting effectiveness of the strain on larva of Hepianlus. The differentiation on biological characteristics of two substrains was i

  16. 西藏虫草属真菌生物学特性研究及其无性型rRNA基因ITS间隔区系统发育分析%Study on biological characteristics of Tibetan Cordyceps and Phylogenetic analysis on ITS Spacer of anamorph rRNA gene

    Institute of Scientific and Technical Information of China (English)

    段双全; 陈彬; 张正果; 央宗; 久美; 铁馥荔

    2011-01-01

    研究从新鲜冬虫夏草分离得到的菌株的形态学特征,并验证其对蝙蝠蛾幼虫的侵染能力.对菌株分化的两个亚型菌株进行了生物学特性研究,并对rRNA基因ITS片段进行了系统发育分析.结果表明:1菌株在18±4℃条件下培养两周后,产生乳白色突起,里面有淡黄色孢子,这种情况下的菌体在侵染蝙蝠蛾幼虫后,20天后长出了子实体;2.菌株进一步分化成无性型的两个亚型菌株CC-1和CC-3,这两株菌在表观上差异不明显,但是其分生孢子形态上有显著差异.菌株CC-1的分生孢子为线型孢子,而CC-3的分生孢子却为镰刀型孢子,两菌株均存在有性生殖和无性生殖两种生殖方式;3对无性型两菌株CC-1和CC-3的rRNA基因ITS片段的系统发育分析表明,两株菌均与冬虫夏草非常相似.

  17. Phylogenetic analysis based on 5.8S rDNA and ITS spacer of anamorph of Cordyceps sinensis from Tibet%西藏冬虫夏草无性型5.8S rDNA,ITS间区系统发育分析

    Institute of Scientific and Technical Information of China (English)

    赵泽孝; 崔晓龙; 丛严广

    2006-01-01

    采用相对较低的培养温度(5~12℃),从西藏那曲当年产风干冬虫夏草[Cordyceps sinensis(Berk.)Sacc.]分离得到菌株C21,综合其菌丝形态学特征及5.8S rDNA和ITS间区的系统发育分析结果,证实菌株C21为冬虫夏草菌的无性型,即中国被毛孢(Hirsutella sinensis).

  18. Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States

    NARCIS (Netherlands)

    Nguyen, H.D.T.; Seifert, K.A.

    2008-01-01

    Three new species of Leohumicola (anamorphic Leotiomycetes) are described using morphological characters and phylogenetic analyses of DNA barcodes. Leohumicola levissima and L. atra were isolated from soils collected after forest fires in Crater Lake National Park, United States. Leohumicola incrust

  19. Are yeast cells of Endomycetales homologues of conidia of Eurotiales?

    NARCIS (Netherlands)

    Arx, von J.A.; Walt, van der J.P.

    1986-01-01

    Similarities in structure, symmetry, and size of asci and ascospores indicate a phylogenetic relationship between the Endomycetales (Endomycetes, Hemiascomycetes) and the Eurotiales and Erysiphales of the Ascomycetes. Their anamorphs which form catenate conidia from meristematic zones and which are

  20. Species concepts in Calonectria (Cylindrocladium)

    NARCIS (Netherlands)

    Lombard, L.; Crous, P.W.; Wingfield, B.D.; Wingfield, M.J.

    2010-01-01

    Species of Calonectria and their Cylindrocladium anamorphs are important plant pathogens worldwide. At present 52 Cylindrocladium spp. and 37 Calonectria spp. are recognised based on sexual compatibility, morphology and phylogenetic inference. The polyphasic approach of integrating Biological, Morph

  1. First records of fungi pathogenic on spiders for the Republic of Serbia

    Directory of Open Access Journals (Sweden)

    Savić, Dragiša

    2016-09-01

    Full Text Available During an investigation into parasitic fungi on arthropods in the mixed forests of Mt. Fruška Gora, Republic of Serbia, two pathogenic species were found: Cordyceps thaxteri Mains (anamorph: Cordyceps thaxteri Mains (Anamorph: Akanthomyces aranearum (Petch Mains and Torrubiella arachnophila (J.R. Johnst. Mains (Anamorph: Gibellula leiopus (Vuill. ex Maubl. Mains (Hypocreales, Cordycipitaceae. Both specimens were found in the anamorphic (asexual stage. Previously, there have been no investigations of this group of fungi in this region, thus these are the first records of pathogenic fungi for both Mt. Fruška Gora and the entire territory of the Republic of Serbia. Collected specimens are deposited in the Herbarium of the National Park Fruška Gora, Republic of Serbia.

  2. Structural insights into the inhibition of cellobiohydrolase Cel7A by xylo‐oligosaccharides

    DEFF Research Database (Denmark)

    Momeni, Majid Haddad; Ubhayasekera, Wimal; Sandgren, Mats;

    2015-01-01

    The filamentous fungus Hypocrea jecorina (anamorph of Trichoderma reesei) is the predominant source of enzymes for industrial saccharification of lignocellulose biomass. The major enzyme, cellobiohydrolase Cel7A, constitutes nearly half of the total protein in the secretome. The performance...

  3. Species Diversity and Polymorphism in the Exophiala spinifera Clade Containing Opportunistic Black Yeast-Like Fungi

    OpenAIRE

    2003-01-01

    A monophyletic group of black yeast-like fungi containing opportunistic pathogens around Exophiala spinifera is analyzed using sequences of the small-subunit (SSU) and internal transcribed spacer (ITS) domains of ribosomal DNA. The group contains yeast-like and annellidic species (anamorph genus Exophiala) in addition to sympodial taxa (anamorph genera Ramichloridium and Rhinocladiella). The new species Exophiala oligosperma, Ramichloridium basitonum, and Rhinocladiella similis are introduced...

  4. Neopetromyces gen. nov and an overview of teleomorphs of Aspergillus subgenus Circumdati

    DEFF Research Database (Denmark)

    Frisvad, Jens Christian; Samson, R. A.

    2000-01-01

    in Aspergillus subgenus Circumdati section Flavi. The ascostromata of P. alliaceus and its synonym P. albertensis resemble those of A. flavus and A. nomius. Another species from section Circumdati, A. lanosus, is reassigned to section Flavi. All these taxa grow well at 37 degrees C, and produce kojic acid......Species in the anamorph genus Aspergillus are associated with several teleomorphic genera in the Eurotiales and the most important mycotoxin producers are concentrated in Aspergillus subgenus Circumdati. A new genus, Neopetromyces, is proposed for the recently described Petromyces muricatus......, because this species differs distinctly from the two other species, P. alliaceus and P. albertensis. Neopetromyces muricatus has flesh-coloured ascostromata and an anamorph in Aspergillus subgenus Circumdati section Circumdati, whereas other Petromyces species have black ascostromata and anamorphs...

  5. Biodiversity of endophytic fungi from seven herbaceous medicinal plants of Malnad region, Western Ghats, southern India

    Institute of Scientific and Technical Information of China (English)

    B. Shankar Naik; M. Krishnappa; Y. L. Krishnamurthy

    2014-01-01

    A total of 3611 fungal isolates were recovered from 4200 leaf segments incubated from 7 medicinal herbs during monsoon, winter and summer seasons. These fungal isolates belonged to teleomorphic Asco-mycota (23.5%), anamorphic Ascomycota producing conidiomata (17.4%), anamorphic Ascomycota without conidiomata (46.9%), Zygo-mycota (1.42%) and sterile forms (10.6%). Chaetomium globosum, As-pergillus niger, Aureobasidium pullulans, Curvularia lunata, Fusarium spp., Penicillium spp., Pestalotiopsis spp., Trichoderma viridae, Cladosporium cladosporioides, were frequently isolated from more than one host plant. The number of endophytic isolates was higher in winter than in monsoon and summer seasons.

  6. Coniochaeta (Lecythophora), Collophora gen. nov and Phaeomoniella species associated with wood necroses of Prunus trees

    NARCIS (Netherlands)

    Damm, U.; Fourie, P.H.; Crous, P.W.

    2010-01-01

    Species of the genus Coniochaeta (anamorph: Lecythophora) are known as pathogens of woody hosts, but can also cause opportunistic human infections. Several fungi with conidial stages resembling Lecythophora were isolated from necrotic wood samples of Prunus trees in South Africa. In order to reveal

  7. A fissitunicate ascus mechanism in the Calosphaeriaceae, and novel species of Jattaea and Calosphaeria on Prunus wood

    NARCIS (Netherlands)

    Damm, U.; Crous, P.W.; Fourie, P.H.

    2008-01-01

    During a survey of Prunus wood from South Africa, isolations were made of three presumably Calosphaerialean fungi that formed hyphomycetous, phialidic anamorphs in culture. In order to reveal the phylogenetic relationship of these fungi, they were characterised on a morphological and molecular (LSU

  8. Coniochaeta (Lecythophora), Collophora gen. nov. And Phaeomoniella species associated with wood necroses of Prunus trees

    NARCIS (Netherlands)

    Damm, U.; Fourie, P.H.; Crous, P.W.

    2010-01-01

    Species of the genus Coniochaeta (anamorph: Lecythophora) are known as pathogens of woody hosts, but can also cause opportunistic human infections. Several fungi with conidial stages resembling Lecythophora were isolated from necrotic wood samples of Prunus trees in South Africa. In order to reveal

  9. Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees

    NARCIS (Netherlands)

    Damm, U.; Fourie, P.H.; Crous, P.W.

    2010-01-01

    Species of the genus Coniochaeta (anamorph: Lecythophora) are known as pathogens of woody hosts, but can also cause opportunistic human infections. Several fungi with conidial stages resembling Lecythophora were isolated from necrotic wood samples of Prunus trees in South Africa. In order to reveal

  10. Description of Kuraishia piskuri f.a., sp. nov., a new methanol assimilating yeast and transfer of phylogenetically related Candida species to the genera Kuraishia and Nakazawaea as new combinations

    Science.gov (United States)

    The new anamorphic yeast Kuraishia piskuri, f.a., sp. nov. is described for three strains that were isolated from insect frass from trees growing in Florida, USA (type strain, NRRL YB-2544, CBS 13714). Species placement was based on phylogenetic analysis of nuclear gene sequences for the D1/D2 domai...

  11. Studies in plant pathogenic fungi—II. On some powdery mildews (Erysiphales) recently recorded from the Netherlands

    NARCIS (Netherlands)

    Noordeloos, M.E.; Loerakker, W.M.

    1989-01-01

    Full descriptions and notes on their pathogenous properties are given of the anamorphs of four powdery mildews recently recorded as new from the Netherlands. Two are described as new species, viz. Oidium longipes on Solarium melongena and O. limnanthis on Limnanthes alba. Oidium lycopersicum Cooke &

  12. Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras-Sporothrix schenckii complex.

    NARCIS (Netherlands)

    de Meyer, E.M.; de Beer, Z.W.; Summerbell, R.C.; Moharram, A.M.; de Hoog, G.S.; Vismer, H.F.; Wingfield, M.J.

    2008-01-01

    Sporothrix, one of the anamorph genera of Ophiostoma, includes the important human pathogen S. schenckii and various fungi associated with insects and sap stain of wood. A survey of fungi from wood utility poles in South Africa yielded two distinct groups of Sporothrix isolates from different geogra

  13. Identification of Pyrenophora teres f. maculata, Causal Agent of Spot Type Net Blotch of Barley in North Dakota

    Science.gov (United States)

    Net blotch of barley (Hordeum vulgare L.), caused by the fungus Pyrenophora teres (anamorph: Drechslera teres) can be differentiated into two forms, net form net blotch (NFNB) and spot form net blotch (SFNB). The pathogen forms causing the two different symptoms are P. teres f. teres and P. teres f....

  14. Evaluation of a barley core collection for spot form net blotch reaction reveals distinct genotype specific pathogen virulence and host susceptibility

    Science.gov (United States)

    Spot form net blotch (SFNB) caused by Pyrenophora teres Drechs. f. maculata Smedeg., (anamorph Drechslera teres [Sacc.] Shoem.) is a major foliar disease of barley (Hordeum vulgare L.) worldwide. SFNB epidemics have recently been observed in major barley producing countries, suggesting that the loca...

  15. Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae)

    DEFF Research Database (Denmark)

    Stadler, M.; Fournier, J.; Læssøe, Thomas;

    2010-01-01

    The tropical genus Thamnomyces is characterized by having wiry, black, brittle stromata and early deliquescent asci, lacking an amyloid apical apparatus. Thamnomyces is regarded as a member of the Xylariaceae because the morphology of its ascospores and the anamorphic structures are typical for t...

  16. Pyrigemmula, a novel hyphomycete genus on grapevine and tree bark

    NARCIS (Netherlands)

    Magyar, Donat; Shoemaker, R.A.; Bobvos, J.; Crous, P.W.; Groenewald, J.Z.

    2011-01-01

    The anamorphic taxon Pyrigemmula aurantiaca gen. et sp. nov. is described and illustrated from specimens that were collected from the inner bark of living woody hosts (Vitis vinifera, Pyrus communis, Mespilus germanica, Platanus hybrida, Elaeagnus angustifolia) and plant debris in Hungary. The fungu

  17. Aspects of sexual reproduction in Mycosphaerella species on wheat and barley : genetic studies on specificity, mapping, and fungicide resistance

    NARCIS (Netherlands)

    Ware, S.B.

    2006-01-01

    Mycosphaerella species are haploid ascomycetes that cause major economic losses in crops that include cereals, citrus fruits, and bananas, among others. Two organisms in this genus are Mycosphaerella graminicola (Fuckel) .I. Schröt (anamorph Sepioria tritici) and Septoriapasserinii. M graminicola is

  18. First localities in Poland of the recently described fungus Cordyceps bifusispora

    Directory of Open Access Journals (Sweden)

    Anna Bujakiewicz

    2014-08-01

    Full Text Available Two localities of the entomopathogenic fungus Cordyceps bifusispora, hitherto not reported from Poland, are characterised by their site conditions and co-occurring macrofungi during the period of the appearance of its stromata. Description of this fungus culture is given and some remarks on the resemblance of its teleomorphs and anamorphs from different collections are discussed.

  19. Crystallization and Preliminary X-ray Diffraction Analysis of the Glucuronoyl Esterase Catalytic Domain from Hypocrea jecorina

    Science.gov (United States)

    The catalytic domain of the glucuronoyl esterase from Hypocrea jecorina (anamorph Trichoderma reesei) was over-expressed, purified, and crystallized by sitting-drop vapor-diffusion method using 1.4 M sodium/potassium phosphate pH 6.9. Crystals had space group P212121 and X-ray diffraction data were...

  20. Cryptic speciation and host specificity among Mycosphaerella spp. occurring on Australian Acacia species grown as exotics in the tropics

    NARCIS (Netherlands)

    Crous, P.W.; Groenewald, J.Z.; Pongpanich, K.; Himaman, W.; Arzanlou, M.; Wingfield, M.J.

    2004-01-01

    Species of Mycosphaerella and their anamorphs represent serious pathogens of two phyllodenous species of Acacia, A. mangium and A. crassicarpa. In recent years, these fungi have been collected during surveys in South America and South-East Asia, where these trees are widely planted as exotics. In th

  1. Apple anthracnose canker life cycle and disease cycle

    Science.gov (United States)

    Apple anthracnose [caused by Neofabraea malicorticis (H.S. Jacks) anamorph Cryptosporiopsis curvispora (Peck)] is a fungal disease that impacts apple production. The pathogen produces cankers on trees as well as a rot on the fruit known as ‘Bull’s-eye rot’. The cankers cause severe damage to trees...

  2. Management of apple anthracnose canker

    Science.gov (United States)

    Apple anthracnose (caused by Neofabraea malicorticis anamorph Cryptosporiopsis curvispora) is a fungal disease that causes cankers on trees and ‘Bull’s-eye rot’ on fruit. In western Washington, it is the canker phase of apple anthracnose that is considered most serious as it can result in death of ...

  3. Phyllosticta species associated with freckle disease of banana

    NARCIS (Netherlands)

    Wong, M.H.; Crous, P.W.; Henderson, J.; Groenewald, J.Z.; Drenth, A.

    2012-01-01

    The identity of the casual agent of freckle disease of banana was investigated. The pathogen is generally referred to in literature under its teleomorphic name, Guignardia musae, or that of its purported anamorph, Phyllosticta musarum. Based on morphological and molecular data from a global set of b

  4. Phylogeny, detection, and mating behaviour of Mycosphaerella spp. occurring on banana

    NARCIS (Netherlands)

    Arzanlou, M.

    2008-01-01

    The genus Mycosphaerella is phylogenetically heterogeneous, and has been linked to more than 30 anamorphic genera. Plant pathogenic species of Mycosphaerella are among the most common and destructive plant pathogens, causing considerable economic losses on a wide range of hosts by invading leaf and

  5. Observations on Neobarya, including new species and new combinations

    DEFF Research Database (Denmark)

    Candoussau, F.; Boqueras, M.; Gómez-Bolea, A.;

    2007-01-01

     Technical abstract:  New combinations and new species are proposed in Neobarya: N. aurantiaca comb. nov., N. byssicola comb. nov., N. lichenicola comb. nov., N. lutea sp. nov., N. peltigerae sp. nov., N. xylariicola sp. nov. Neobarya agaricicola, and N. parasitica are redescribed. Anamorphs asso...

  6. Multiple gene sequences delimit Botryosphaeria australis sp. nov. from B. lutea

    NARCIS (Netherlands)

    Slippers, B.; Fourie, G.; Crous, P.W.; Coutinho, T.A.; Wingfield, B.D.; Wingfield, M.J.

    2004-01-01

    Botryosphaeria lutea (anamorph Fusicoccum luteum) most easily is distinguished from other Botryosphaeria spp. by a yellow pigment that is formed in young cultures. This fungus has been reported from a number of cultivated hosts in New Zealand and Portugal. During a survey of Botryosphaeria fungi tha

  7. Books received by the Rijksherbarium library

    NARCIS (Netherlands)

    NN,

    1992-01-01

    The Ascomycete genus Monilinia Honey with its anamorph Monilia includes many parasites of woody perennials, including economically important fruit-trees. This study treats the morphology in vivo and in vitro and detailed life histories; it evaluates, describes and selects criteria for the generic an

  8. Zygoascus hellenicus gen. nov., sp. nov., the teleomorph of Candida hellenica (= C. inositophila = C. steatolytica).

    Science.gov (United States)

    Smith, M T

    1986-01-01

    The anamorphic yeast species Candida hellenica, C. inositophila and C. steatolytica were found to constitute haploid mating types of an undescribed, filamentous heterothallic Endomycete. The new genus Zygoascus is proposed for the teleomorph. Descriptions are given of the genus and type species, Z. hellenicus.

  9. Phylogeny and taxonomic revision of Thelonectria discophora (Ascomycota, Hypocreales, Nectriaceae) species complex

    Science.gov (United States)

    Thelonectria discophora (Thelonectria, Nectriaceae, Hypocreales) is a conspicuous group of saprobic fungi on decaying plant material, characterized by red perithecia each with a broad mammiform (nipple-like) apex. The anamorphic state is characterized by a cylindrocarpon-like morphology, with 3–5 se...

  10. Cladosporium fulvum (syn. Passalora fulva), a highly specialized plant pathogen as a model for functional studies on plant pathogenic Mycosphaerellaceae

    NARCIS (Netherlands)

    Thomma, B.P.H.J.; Esse, van H.P.; Crous, P.W.; Wit, de P.J.G.M.

    2005-01-01

    Taxonomy: Cladosporium fulvum is an asexual fungus for which no sexual stage is currently known. Molecular data, however, support C. fulvum as a member of the Mycosphaerellaceae, clustering with other taxa having Mycosphaerella teleomorphs. C. fulvum has recently been placed in the anamorph genus Pa

  11. Clinical characteristics and epidemiology of pulmonary pseudallescheriasis

    NARCIS (Netherlands)

    Kantarcioglu, A.S.; de Hoog, G.S.; Guarro, J.

    2012-01-01

    Background: Some members of the Pseudallescheria (anamorph Scedosporium) have emerged as an important cause of life-threatening infections in humans. These fungi may reach the lungs and bronchial tree causing a wide range of manifestations, from colonization of airways to deep pulmonary infections.

  12. Phylogenetic and morphological re-evaluation of the Botryosphaeria species causing diseases of Mangifera indica

    NARCIS (Netherlands)

    Slippers, B.; Johnson, G.I.; Crous, P.W.; Coutinho, T.A.; Wingfield, B.D.; Wingfield, M.J.

    2005-01-01

    Species of Botryosphaeria are among the most serious pathogens that affect mango trees and fruit. Several species occur on mangoes, and these are identified mainly on the morpholopy of the anamorphs. Common taxa include Dothiorella dominicana, D. mangiferae (= Natrassia mangiferae), D. aromatica and

  13. Cladosporium herbarum is a cause of a leaf spot disease on Caltha leptosepala (marsh-marigold) in western North America

    Science.gov (United States)

    Caltha leptosepala ssp. howellii and Caltha leptosepala ssp. leptosepala (marsh-marigold, Ranunculaceae) inhabit stream banks and wet meadows in subalpine zones in the northern Rocky and Cascade mountain ranges of North America. Cladosporium herbarum (anamorphic Davidiellaceae) is a cosmopolitan sap...

  14. The genus Cladosporium

    NARCIS (Netherlands)

    Bench, K.; Braun, U.; Groenewald, J.Z.; Crous, P.W.

    2012-01-01

    A monographic revision of the hyphomycete genus Cladosporium s. lat. (Cladosporiaceae, Capnodiales) is presented. It includes a detailed historic overview of Cladosporium and allied genera, with notes on their phylogeny, systematics and ecology. True species of Cladosporium s. str. (anamorphs of Dav

  15. Mating type-correlated molecular markers and demonstration of heterokaryosis in the phytopathogenic fungus Thanatephorus cucumeris (Rhizoctonia solani) AG 1-IC by AFLP DNA fingerprinting analysis

    NARCIS (Netherlands)

    Julian, M.C.; Acero, J.; Salazar, O.; Keijer, J.; Rubio, O.

    1999-01-01

    The destructive soil-borne plant pathogenic basidiomycetous fungus Thanatephorus cucumeris (Frank) Donk [anamorph: Rhizoctonia solani Kühn] is not a homogeneous species, but is composed of at least twelve anastomosis groups (AG), which seem to be genetically isolated. The genetics of several T. cucu

  16. Genetic mapping of 14 avirulence genes in an EU-B04 x 1639 progeny of Venturia inaequalis

    NARCIS (Netherlands)

    Broggini, G.A.L.; Bus, V.G.M.; Parravicini, G.; Kumar, S.; Groenwold, R.; Gessler, C.

    2011-01-01

    Durable resistance to apple scab (Venturia inaequalis (Cke) Wint; anamorph Spilocaea pomi Fries) is one of the major goals of apple (Malus) breeding programs. Since current scab resistance breeding is heavily reliant on genes with gene-for-gene relationships, a good understanding of the genetic basi

  17. Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex

    NARCIS (Netherlands)

    Cabral, A.; Groenewald, J.Z.; Rego, C.; Oliveira, H.; Crous, P.W.

    2012-01-01

    Ilyonectria radicicola and its Cylindrocarpon-like anamorph represent a species complex that is commonly associated with root rot disease symptoms on a range of hosts. During the course of this study, several species could be distinguished from I. radicicola sensu stricto based on morphological and

  18. Variation and Transgression of Aggressiveness Among Two Gibberella Zeae Crosses Developed from Highly Aggressive Parental Isolates

    Science.gov (United States)

    Gibberella zeae (anamorph: Fusarium graminearum) is the most common cause of Fusarium head blight (FHB) of wheat (Triticum aestivum) worldwide. Aggressiveness is the most important fungal trait affecting disease severity and stability of host resistance. Objectives were to analyze in two field exper...

  19. Barriopsis iraniana and Phaeobotryon cupressi: two new species of the Botryosphaeriaceae from trees in Iran

    NARCIS (Netherlands)

    Abdollahzadeh, J.; Mohammadi Goltapeh, E.; Javadi, A.; Shams-bakhsh, M.; Zare, R.; Phillips:, A.J.L.

    2009-01-01

    Species in the Botryosphaeriaceae are well known as pathogens and saprobes of woody hosts, but little is known about the species that occur in Iran. In a recent survey of this family in Iran two fungi with diplodia-like anamorphs were isolated from various tree hosts. These two fungi were fully char

  20. Occurrence of keratinolytic fungi and related dermatophytes in soils in Cairo, Egypt.

    Science.gov (United States)

    Youssef, Y A; el-Din, A A; Hassanein, S M

    1992-01-01

    120 soil samples collected from various sites of Cairo were processed for the isolation of keratinophilic fungi by "ToKaVa" hair baiting technique. 22 species belonging to 6 genera were isolated viz.: Chrysosporium tropicum, C. indicum, C. keratinophilum, C. queenslandicum, C. merdarium, C. anamorph of Arthroderma curreyi, C. pannicola, C. lobatum, C. anamorph of Renispora flavissima, C. pseudomerdarium, Microascus mangini, Malbranchea gypsea, Ml. State of Uncicarpus reesii, Ml. State of Coccidioides immitis, Microsporum gypseum, Mr. distortum Mr. audouinii, Mr. fulvum, Trichophyton mentagrophytes, T. terrestre, T. verrucosum and Epidermophyton floccosum. The frequency of occurrence of the isolated fungi was determined. Microsporum gypseum, Chrysosporium tropicum and Chrysosporium indicum were the most frequent species recovered from soil. Most species of keratinophilic fungi were isolated from university, public garden and zoo garden. The distribution of the isolates are discussed.

  1. Description of Martiniozyma gen. nov. and transfer of seven Candida species to Saturnispora as new combinations.

    Science.gov (United States)

    Kurtzman, Cletus P

    2015-10-01

    DNA sequence analysis has shown Candida abiesophila (NRRL Y-11514(T), CBS 5366(T)) and Candida asiatica (NRRL Y-63747(T), CBS 10863(T)) to be members of a small clade that is phylogenetically separate from other yeasts. In view of their isolation from neighboring genera, such as Pichia and Saturnispora, the two anamorphic species are proposed for transfer to Martiniozyma gen. nov. (MycoBank MB 812061) with Martiniozyma abiesophila designated as type species (MycoBank MB 812062). In keeping with the International Code of Nomenclature for algae, fungi, and plants, which specifies that related anamorphic and teleomorphic species can be assigned to the same genus, the following Candida species are transferred to Saturnispora to conform with their phylogenetic placement: Candida diversa (NRRL Y-5713(T)), Candida halmiae (CBS 11009(T)), Candida sanitii (CBS 10864(T)), Candida sekii (CBS 10931(T)), Candida siamensis (CBS 11022(T)), Candida silvae (NRRL Y-6725(T)) and Candida suwanaritii (CBS 11021(T)).

  2. NUEVAS ESPECIES PARA LA UREDOBIOTA NEOTROPICAL NEW SPECIES FOR THE NEOTROPICAL UREDOBIOTA

    Directory of Open Access Journals (Sweden)

    Mauricio Salazar Yepes

    2008-06-01

    Full Text Available Se describen seis especies teliomórficas y dos anamórficas nuevas para la ciencia; una nueva combinación anamórfica es propuesta; los Uredinales fueron colectados sobre los hospedantes: Thumbergia sp., Baccharis nitida, Baccharis decussata, Bidens sp., Tabebuia rosea, Euphorbia laurifolia, Crotalaria nitens, Artocarpus communis y Polypodium adnatum. Esta investigación permite inferir una alta diversidad de Uredinales en la zona cafetera colombiana.Six teliomorphic and two anamorphic new rust species are described on: Thumbergia sp., Baccharis nitida, Baccharis decussata, Bidens sp., Tabebuia rosea, Euphorbia laurifolia, Crotalaria nitens, and Polypodium adnatum in the Colombian coffee area. A new anamorphic combination is proposed on: Artocarpus communis. This study allows to infer a high diversity of rust fungi in this area.

  3. Coherent temporal imaging with analog time-bandwidth compression

    CERN Document Server

    Asghari, Mohammad H

    2013-01-01

    We introduce the concept of coherent temporal imaging and its combination with the anamorphic stretch transform. The new system can measure both temporal profile of fast waveforms as well as their spectrum in real time and at high-throughput. We show that the combination of coherent detection and warped time-frequency mapping also performs time-bandwidth compression. By reducing the temporal width without sacrificing spectral resolution, it addresses the Big Data problem in real time instruments. The proposed method is the first application of the recently demonstrated Anamorphic Stretch Transform to temporal imaging. Using this method narrow spectral features beyond the spectrometer resolution can be captured. At the same time the output bandwidth and hence the record length is minimized. Coherent detection allows the temporal imaging and dispersive Fourier transform systems to operate in the traditional far field as well as in near field regimes.

  4. [Keratinophilic fungal flora isolated from small wild mammals and rabbit-warren in France. Discussion on the fungal species found].

    Science.gov (United States)

    Chabasse, D; Guiguen, C; Couatarmanac'h, A; Launay, H; Reecht, V; de Bièvre, C

    1987-01-01

    The occurrence of dermatophytes and other keratinophilic fungi was investigated in 237 small wild mammals and 125 european rabbit. The purpose of the investigation was to determine what were the species of fungi present in the these animals. Four species of dermatophytes were isolated: Trichophyton ajelloi, Trichophyton terrestre, Trichophyton mentagrophytes, Microsporum persicolor. Trichophyton terrestre was the most frequently isolated and it occurred more frequently than its presence could be explained by the contamination from soil. Members of the genus Chrysosporium were found in many animals: Chrysosporium keratinophilum, Chrysosporium tropicum, Chrysosporium multifidum, Chrysosporium pannorum, Chrysosporium georgii, Chrysosporium merdarium, Chrysosporium anamorph of Arthroderma curreyi, Chrysosporium anamorph of Arthroderma cuniculi, Anixiopsis stercoraria, Chrysosporium parvum. Wild small mammals and european rabbits in France, not only act as carrier of keratinophilic fungi and allied dermatophytes but also provide a suitable habitat for their survival as saprophytes. The recurrence of numerous species present on the coat, isolated fort the first time in France was remarkable.

  5. Zoom lens compensator for a cylindrical window in laser anemometer uses.

    Science.gov (United States)

    Wernet, M P; Seasholtz, R G

    1987-11-01

    In laser anemometer systems, the flow fields under study are typically enclosed by a window. Aberration of a flat window can be corrected by a shift of the object distance. A zooming correction lens eliminates the astigmatism caused by a thick cylindrical window and yields diffraction-limited performance for a monochromatic laser anemometer system. The effects of residual anamorphic distortion are discussed, and procedures for correcting these effects are presented.

  6. 安徽的虫草及其相关真菌Ⅱ%The genus Cordyceps and its allies from Anhui Ⅱ

    Institute of Scientific and Technical Information of China (English)

    仇飞; 张琪; 李春如; Spatafora Joey; 樊美珍; 李增智

    2012-01-01

    In this paper, 20 species of Cordyceps and its allies from some nature preserves in Anhui Province were reported as follows: Cordyceps brongniartii and its anamorph Beauveria brongniartii, C. cylindrica and its anamorph Nomuraea atypicola, Metacordyceps guniujiangensis and its anamorph Metarhizium aff. cylindro-sporum, Ophiocordyceps heteropoda var. langyashanensis and its anamorph Hirsutella heteropoda, O. mel-olonthae, O. odonatae, O. gryllotalpae, C, kusanagiensis and so on. Among them, O. melolonthae is a new record to China mainland and a minor error in original description of O. odonatae was revised. Specimens examined are deposited in Research Center on Entomogenous Fungi, Anhui Agricultural University (RCEFAAU).%对安徽省分布的布氏虫草Cordyceps brongniartii及其无性型布氏白僵菌Beauveria brongniartii、柱形虫草Cordyceps cylindrica及其无性型紫色野村菌Nomuraea atypicola、牯牛降异虫草Metacordyceps guniujiangensis及其无性型柱孢绿僵菌近似种Metarhizium aff.cylindrosporum、根足线虫草琅琊山变种Ophiocordyceps heteropoda var.langyashanensis及其无性型根足被毛孢Hirsutella heteropoda、腮金龟线虫草O.melolonthae、蜻蜓线虫草O.odonatae、蝼蛄线虫草(朝鲜虫草)O.gryllotalpae和草剃虫草Cordyceps kusanagiensis等20个虫草及其相关真菌种类重新整理发表,其中腮金龟虫草为中国大陆首次报道;同时,纠正了蜻蜓线虫草原始描述中的错误.鉴定标本保存在安徽农业大学虫生真菌研究中心(RCEFAAU).

  7. Studies in plant pathogenic fungi—II. On some powdery mildews (Erysiphales) recently recorded from the Netherlands

    OpenAIRE

    Noordeloos, M.E.; Loerakker, W.M.

    1989-01-01

    Full descriptions and notes on their pathogenous properties are given of the anamorphs of four powdery mildews recently recorded as new from the Netherlands. Two are described as new species, viz. Oidium longipes on Solarium melongena and O. limnanthis on Limnanthes alba. Oidium lycopersicum Cooke & Massee is redescribed on account of the study of the holotype and recently collected material, and an Oidium sp. occurring on Chrysanthemum morifolium is critically compared with the existing desc...

  8. [The occurrence of keratinolytic fungi in the polluted environment of the Labedy District in Gliwice].

    Science.gov (United States)

    Ulfig, K

    1994-01-01

    This study was undertaken to find relationships between the degree of bacteriological contamination with qualitative composition of potentially pathogenic keratinolytic fungal population in soil, sediment and air samples from the Labedy district in Gliwice (Poland). The examined soil samples were characterized by the predominance of Botryotrichum piluliferum, Chrysosporium anamorph of Arthroderma curreyi, Myceliophthora anamorph of Ctenomyces serratus, Chrysosporium pannicola and Trichphyton ajelloi. These species are typical for keratinolytic mycoflora in moderate climate soils, and their abundance was certainly resulted from the assembly of keratin remains in the soil environment. In the light of the weak bacteriological and mycological differentiation of the examined soil samples, however, it is difficult to determine categorically the extent to which the remains were originated from sewage via soil flooding by sewage or air transportation, or from the local human and animal population. Subsequently, the population of keratinolytic fungi in sediments was found to be clearly dependent of the degree of water contamination with sewage. In badly polluted sediments, Chrysosporium pannicola, Chrysosporium anamorph of Aphanoascus fulvescens, Chrysosporium keratinophilum, Trichophyton ajelloi and Microsporum cookei were prevalent species. Keratinolytic fungi were only a small part of airborne fungal population in sewage bioaerosoles. Geomyces pannorum, a soil species better known by its celullotytic than keratinolytic properties, predominated in air samples. Some pathogenic species, such as Aspergillus flavus, Aureobasidium pullulans, Chrysporium anamorph of Aphanoascus fulvescens, Candida spp., Geotrichum candidum, Microsporum canis, Sporothrix schenckii and Trichosporon beigelii, were recovered in the present study. This confirms that the sewage-contaminated environments in an important storage place of pathogenic fungi, mostly from the opportunistic subgroup.

  9. Rosalia longicorn Rosalia alpina (LINNAEUS, 1758 (Coleoptera: Cerambycidae as a host of the entomopathogenic fungus Cordyceps bassiana LI, LI, HUANG

    Directory of Open Access Journals (Sweden)

    Bartnik Czesław

    2016-06-01

    Full Text Available The paper describes, for the first time, the occurrence of the entomopathogenic fungus Cordyceps bassiana (anamorph: Beauveria bassiana on the imago of the endangered beetle Rosalia longicorn Rosalia alpina from the Low Beskid Mountains (the Carpathians, SE Poland. Furthermore, an isolate of the saprotrophic fungus Hypoxylon fragiforme was obtained as a result of laboratory tests on R. alpina specimens. Relationships between the identified fungi and R. alpina are discussed.

  10. Photorefractive Polymers for Updateable 3D Displays

    Science.gov (United States)

    2010-02-24

    the source spectrum extension and Bragg chromatic selectivity. Figure 11. Reading geometry. When replaying the hologram, two light sources with...different colors are positioned at their respective Bragg angles. Each hologram diffracts only one color and there is no chromatic crosstalk. The...need to anamorphically format the writing beams with cylindrical lenses, spherical aberration corrected lenses can be used. However, a full parallax

  11. Michelson interferometer null may confirm transverse Doppler Effect

    CERN Document Server

    Woodruff, Robert A

    2014-01-01

    We analyze fringe formation within Michelson-like experiments as viewed by relativistic inertial observers. Our analysis differs from previous work because we include optical misalignment of the beamsplitter of the interferometer due to the anamorphic geometry of relativistic Lorentz contraction. We conclude that inertial frame equivalence of Michelson-like experiments provide verification of the transverse Doppler Effect and exclude any model incorporating the relativistic Lorentz contraction effect.

  12. Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium

    OpenAIRE

    Samson, R.A.; Yilmaz, N.; Houbraken, J.; Spierenburg, H.; Seifert, K.A.; Peterson, S.W.; Varga, J.; Frisvad, Jens Christian

    2011-01-01

    The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified in Talaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocom...

  13. A anamorfose na composição de Las meninas de Picasso

    Directory of Open Access Journals (Sweden)

    Geraldo Carlos do Nascimento

    2000-11-01

    Full Text Available The reading that Picasso has done of Velázquez’s portrait Las meninas demonstrates evidences of a process of distortions which is shown on the fifty-eight canvases that he had painted inspired in the abovementioned masterpiece. This text intends to mark that those distortions, which - according to Jacques Lacan - are typical from an anamorphics process, went deeper as Picasso moved away from the original and allowed his own enunciation to come out.

  14. Synthetic gauge fields for light beams in optical resonators

    CERN Document Server

    Longhi, Stefano

    2015-01-01

    A method to realize artificial magnetic fields for light waves trapped in passive optical cavities with anamorphic optical elements is theoretically proposed. In particular, when a homogeneous magnetic field is realized, a highly-degenerate Landau level structure for the frequency spectrum of the transverse resonator modes is obtained, corresponding to a cyclotron motion of the optical cavity field. This can be probed by transient excitation of the passive optical resonator.

  15. A fissitunicate ascus mechanism in the Calosphaeriaceae, and novel species of Jattaea and Calosphaeria on Prunus wood.

    Science.gov (United States)

    Damm, U; Crous, P W; Fourie, P H

    2008-06-01

    During a survey of Prunus wood from South Africa, isolations were made of three presumably Calosphaerialean fungi that formed hyphomycetous, phialidic anamorphs in culture. In order to reveal the phylogenetic relationship of these fungi, they were characterised on a morphological and molecular (LSU and ITS rDNA) basis. Two isolates that formed a teleomorph in culture are newly described as Calosphaeria africana sp. nov. Although asci of Calosphaeria are characterised by having non-amyloid apical rings, two functional wall layers were observed in asci of C. africana, which has hitherto not been observed in any member of the Calosphaeriaceae. However, Calosphaeriaceae (Calosphaeriales, Sordariomycetes) are not closely related to other bitunicate fungi like Dothideomycetes, Chaetothyriales and bitunicate lichens. Possession of two separating wall layers is considered to be a result of both inherited abilities and convergent evolution under a strong selection pressure of the environmental conditions that favour an extension of the ascus. The other two species represented a separate lineage within Calosphaeriaceae, and formed phialophora-like anamorphs. By obtaining the teleomorph in culture, one of them could be identified as a species of Jattaea, described here as Jattaea prunicola sp. nov., while the second, which only produced the anamorph, is named as Jattaea mookgoponga sp. nov. These findings suggest that some species of Jattaea are true members of the Calosphaeriaceae, though the phylogenetic relation of the type, J. algeriensis, remains unknown. Furthermore, it also represents the first report of Jattaea on Prunus wood, and from South Africa.

  16. Phylogeny of the Botryosphaeriaceae reveals patterns of host association.

    Science.gov (United States)

    De Wet, Juanita; Slippers, Bernard; Preisig, Oliver; Wingfield, Brenda D; Wingfield, Michael J

    2008-01-01

    Three anamorph genera of the Botryosphaeriaceae namely Diplodia, Lasiodiplodia and Dothiorella have typically dark, ovoid conidia with thick walls, and are consequently difficult to distinguish from each other. These genera are well-known pathogens of especially pine species. We generated a multiple gene genealogy to resolve the phylogenetic relationships of Botryosphaeriaceae with dark conidial anamorphs, and mapped host associations based on this phylogeny. The multiple gene genealogy separated Diplodia, Lasiodiplodia and Dothiorella and it revealed trends in the patterns of host association. The data set was expanded to include more lineages of the Botryosphaeriaceae, and included all isolates from different host species for which ITS sequence data are available. Results indicate that Diplodia species occur mainly on gymnosperms, with a few species on both gymnosperms and angiosperms. Lasiodiplodia species occur equally on both gymnosperms and angiosperms, Dothiorella species are restricted to angiosperms and Neofusicoccum species occur mainly on angiosperms with rare reports on Southern Hemisphere gymnosperms. Botryosphaeria species with Fusicoccum anamorphs occur mostly on angiosperms with rare reports on gymnosperms. Ancestral state reconstruction suggests that a putative ancestor of the Botryosphaeriaceae most likely evolved on the angiosperms. Another interesting observation was that both host generalist and specialist species were observed in all the lineages of the Botryosphaeriaceae, with little evidence of host associated co-evolution.

  17. [Survey of keratinophilic fungi from soils and mating behaviour of Microsporum canis from human ringworm cases in Hokkaido Prefecture in Japan].

    Science.gov (United States)

    Kubo, H

    1988-03-01

    From 383 (38.3%) of a total 1000 of soil samples, collected from Hokkaido prefecture, keratinophilic fungi have been isolated using hair baiting technique. The fungi isolated were as follows: 318 strains of Trichophyton ajelloi (including 90 strains of Arthroderma uncinatum), 59 of Microsporum cookei (including 13 of Nannizzia cajetani), 32 of Chrysosporium keratinophilum, 23 of C. tropicum, 15 of Chrysosporium anamorph of A. tuberculatum, 6 of T. terrestre (including 3 of A. insingulare and one of A. quadrifidum), 4 of Chrysosporium sp., 2 of M. canis (including one of N. otae), one of M. gypseum, and one of Ctenomyces serratus. This is the first isolation of N. otae from soil. Because of the successful isolation of N. otae (and its anamorph) from soil sample, (+) strain of M. canis was suggested to be popular in Hokkaido prefecture. The prevalence of (+) strain of M. canis was investigated using 279 isolates obtained from human ringworm cases. Among the 279 isolates, 257 were (-) mating type, 8 were (+) and 14 were nonreactive. Results of the present study indicate that the distribution of keratinophilic fungi from soils in Hokkaido prefecture is markedly different from that in the southern parts of Japan. The unexpected isolation of N. otae and its anamorph from soil samples as well as the significant population of N. otae(+) strain from human ringworms suggest the peculiar distribution pattern of N. otae (+) in Hokkaido prefecture.

  18. 安徽的虫草及其相关真菌I.%THE GENUS CORDYCEPS AND I0TS ALLIES FROM ANHUI I.

    Institute of Scientific and Technical Information of China (English)

    李春如; 樊美珍; 黄勃; 王四宝; 李增智

    2002-01-01

    报道疣孢虫草Cordyceps phymatospora为新种;球孢虫草C. bassiana 及其无性型Beauveria bassiana, 长座虫草C. longissima 及其无性型 Hirsutella longissima, 台湾虫草C. formosana 及其无性型 Hirsutella sp., 拟细虫草C. gracilioides和丝虫草C. filiformis 等19种虫草及其部分相关真菌.模式标本保存在安徽农业大学虫生菌研究中心(RCEFAAU).%19 species of Cordyceps and its allies from some nature preserves in Anhui Province, southeastern China are reported. They are Cordyceps phymatospora sp. nov., C. bassiana and its anamorph Beauveria bassiana, C. longissima and its anamorph Hirsutella longissima, C. formosana and its anamorph Hirsutella sp., C. gracilioides, C. filiformis and so on. Specimens examined are deposited in Research Center on Entomogenous Fungi, Anhui Agricultural University (RCEFAAU).

  19. Scytalidium parasiticum sp. nov., a New Species Parasitizing on Ganoderma boninense Isolated from Oil Palm in Peninsular Malaysia.

    Science.gov (United States)

    Goh, Yit Kheng; Goh, Teik Khiang; Marzuki, Nurul Fadhilah; Tung, Hun Jiat; Goh, You Keng; Goh, Kah Joo

    2015-06-01

    A mycoparasite, Scytalidium parasiticum sp. nov., isolated from the basidiomata of Ganoderma boninense causing basal stem rot of oil palm in Johor, Malaysia, is described and illustrated. It is distinct from other Scytalidium species in having smaller asci and ascospores (teleomorphic stage), longer arthroconidia (anamorphic stage), hyaline to yellowish chlamydospores, and producing a fluorescent pigment. The phylogenetic position of S. parasiticum was determined by sequence analyses of the internal transcribed spacers and the small-subunit ribosomal RNA gene regions. A key to identify Scytalidium species with teleomorphic stage is provided.

  20. The occurrence of keratinophilic fungi in sewage sludge from Egypt.

    Science.gov (United States)

    Abdel-Hafez, A I; el-Sharouny, H M

    1990-01-01

    The keratinophilic fungi of 40 sewage sludge samples from Upper Egypt were studied using a goat hair-baiting technique. 43 species representing 22 genera were isolated, 17 species of which were dermatophytes and closely related fungi: Chrysosporium state of Arthroderma tuberculatum, C. asperatum, C. georgii, C. indicum, C. keratinophilum, C. pseudomerdarium, C. queenslandicum, Chrysosporium state of Thielavia sepedonium, C. tropicum, Microsporum cookei, M. gypseum, Myceliophthora anamorph of Corynascus novoguineensis, M. vellerea and Trichophyton terrestre. 26 species of cycloheximide resistant fungi were collected and these included members of Acremonium, Aspergillus, Alternaria, Chaetomium, Cladosporium, Cunninghamella, Emericella, Fusarium, Geotrichum, Penicillium and others.

  1. Extended studies on the diversity of arthropod-pathogenic fungi in Austria and Poland

    Directory of Open Access Journals (Sweden)

    Cezary Tkaczyk

    2013-12-01

    Full Text Available Results of studies on diversity of arthropod-pathogenic fungi in selected habitats in Austria and Poland carried out in the years 2006-2007 and 2009-2010 are discussed. In total 47 species of entomopathogenic fungi were found as pathogens of different arthropods in Austria. Twenty six entomophthoralean species from different insects and one species from mites were identified and 16 of them are recorded as new to Austria. From among 21 species of anamorphic Hypocreales (Ascomycota affecting arthropods in Austria, 13 species so far have not been known from this country. In total 51 species of fungi affecting different arthropods in Poland were recorded, among them 28 species of Entomophthorales and 23 anamorphic Hypocreales (Ascomycota were separated. The most frequent species of the entomopathogenic fungi both in agricultural and afforested areas in Austria were the common and usually worldwide distributed cordycipitaceous anamorphs Beauveria bassiana, Isaria fumosorosea and in areas of this study less numerous I. farinosa. The most frequent pathogens occurring in mite communities on plants and in wood infested by insects were Hirsutella species. Several entomophthoralean species developed epizootics that caused high reduction in host populations of different arthropods in both countries. Especially interesting is the first record of mycoses (up to 60% mortality, caused by Zoophthora spp. on Phyllobius beetles in a mixed forest near Białowieża. During our joint research, we found the first time in Poland and Europe, the presence of the fungus Furia cf. shandongensis on earwigs and Hirsutella entomophila on Ips typographus adults in forest habitats. From the feeding sites of the latter bark beetle and other subcortical species in oak bark (mostly Dryocoetes villosus and D. alni in black alder over a dozen of various Lecanicillium strains - including few of the features not allowing to classify them to any of so far known species – were

  2. [Characteristic of the yeast isolated from patients with leukaemia].

    Science.gov (United States)

    Fedorovskaia, E A; Rybal'skaia, A P; Skachkova, N K; Mel'nik, E A; Nemirovskaia, L N; Nagornaia, S S; Babich, T V; Polishchuk, L V

    2008-01-01

    It has been shown that biotopes of upper respiratory system and intestine were contaminated with yeast in 44.6% of patients with leukaemia (of 112 examined ones). Their quantity exceeds the boundary value for practically healthy people and is > or = 10(2) KOE/ml in the nasal activity and fauces and leucemia the mycotic complications are mainly caused by anamorphous yeast of ascomycetic affinity. Candida albicans, as well as C. glabrata, C. rugosa and Candida sp. play the leading role. The Candida genus species are mainly sensitive to amphotericine B, clotrisamol and nistatin.

  3. Isolation and identification of endophytic fungi in roots of nine Holcoglossum plants (Orchidaceae) collected from Yunnan, Guangxi, and Hainan provinces of China.

    Science.gov (United States)

    Tan, Xiao-Ming; Chen, Xiao-Mei; Wang, Chun-Lan; Jin, Xiao-Hua; Cui, Jin-Long; Chen, Juan; Guo, Shun-Xing; Zhao, Li-Fang

    2012-02-01

    Holcoglossum is one of the smaller genera of Orchidaceae, mainly distributed in southwest China. Some members of this genus as well as H. rupestre and H. flavescens are endemic and rare Chinese orchids. As far as we know, little work has been done concerning the relationships between the Holcoglossum plants and endophytic microorganisms. In this study, 46 culturable fungal endophytes were isolated and identified from roots of nine Holcoglossum plants collected from Yunnan, Guangxi, and Hainan provinces of China based on molecular techniques. The results showed that all strains belonged to four classes, i.e., Sordariomycetes (41.30%), Dothideomycetes (36.96%), Agaricomycetes (17.39%), Leotiomycetes (4.35%). Thirty-six strains were identified at the genus level, including Alternaria, Cladosporium, Clonostachys, Colletotrichum, Cosmospora, Cryptosporiopsis, Cylindrocarpon, Didymella, Epulorhiza (Anamorphic Tulasnella), Fusarium, Myrmecridium, Leptosphaeria, Paraconiothyrium, Phomopsis, Pyrenochaeta, and Stephanonectria. Fusarium and Epulorhiza (Anamorphic Tulasnella) were the dominant fungal endophytes. Some orchids mycorrhizal fungi as well as Tulasnella calospora and Epulorhiza sp. were found in roots. This is the first report concerning endophytic fungi from Holcoglossum plants (Orchidaceae), suggesting that endophytic fungi in Holcoglossum plants are very abundant.

  4. Xylaria species associated with nests of Odontotermes formosanus in Taiwan.

    Science.gov (United States)

    Ju, Yu-Ming; Hsieh, Huei-Mei

    2007-01-01

    Nine species of Xylaria were collected in Taiwan from nests of Odontotermes formosanus, the only known macrotermitine termite in Taiwan. These include six newly described species, X. acuminatilongissima, X. atrodivaricata, X. brunneovinosa, X. griseosepiacea, X. intraflava and X. ochraceostroma, and three previously known species, X. cirrata, X. escharoidea and X. nigripes. We obtained cultures and ITS sequences from the nine species found in Taiwan and describe anamorphs for eight of them. Before the current study teleomorph-anamorph connections in the Xylaria species associated with termite nests have been established unequivocally in X. escharoidea only. Xylaria angulosa, X. fimbriata, X. kedahae, X. micrura, X. radicans, X. reinkingii and X. tolosa also are considered and annotated because they were reported to grow on ground and likely are associated with termite nests. Epitypifications are made for X. cirrata, X. escharoidea and X. nigripes. Xylaria sanchezii is considered a nomen dubium. Photographs are presented for most of the aforementioned species. A dichotomous key to 25 Xylaria species growing on termite nests or ground also is given.

  5. Trichophyton onychocola sp. nov. isolated from human nail.

    Science.gov (United States)

    Hubka, Vit; Cmokova, Adela; Skorepova, Magdalena; Mikula, Peter; Kolarik, Miroslav

    2014-04-01

    A previously undescribed Trichophyton species was isolated from the nail of a 33-year-old man with a history of probable distal lateral subungual onychomycosis (without confirmation by mycological examination). The infection occurred for the first time five years earlier (in 2006) and affected the right great toenail, with complete clinical remission after treatment with ciclopirox olamine. This undescribed species was isolated during probable relapse in 2011, but its etiological significance was not confirmed, that is, direct microscopy was negative and additional clinical samples were not collected. The species is probably geophilic based on phylogenetic analysis (internal transcribed spacer [ITS] rDNA) and is most closely related to the anamorphic T. thuringiense, homothallic Arthroderma ciferrii (anamorph T. georgiae), and heterothallic A. melis. The new species is characterized by yellowish colonies, red reverse on several media, positive urease test, negative hair-perforation test, absence of growth at 34°C, absence of macroconidia, formation of one-celled clavate microconidia, and spiral hyphae. The species grows well on sterilized human hairs placed on agar medium without any additional nutrients and forms gymnothecium-like structures covered by peridial hyphae. The combination of unique micro- and macromorphological features and physiological and sequence data from four unlinked loci (ITS, benA, RPB2, and act1 gene) justified the proposal of a new species T. onychocola sp. nov.

  6. Co-existence and interaction between myxomycetes and other organisms in shared niches

    Directory of Open Access Journals (Sweden)

    Irina O. Dudka

    2013-12-01

    Full Text Available The ecology of myxomycetes co-existing with the Latridiidae (Coleoptera, bryophytes and ascomycetous, basidiomycetous and anamorphic fungi were studied in Crimea and at different locations on the left bank of Ukraine. Results from the left bank indicate that the Latridiidae feed on myxomycetes. Colonies of the most common 13 myxomycete species (which included Stemonitis axifera (Bull. Macbr., S. fusca Roth, S. splendens Rost., Fuligo septica (L. Wigg. and Mucilago crustacea Wigg. were inhabited by 5 species of the Latridiidae. Myxomycete spores were present in guts of 19 of the 25 beetle specimens investigated. Beetles Latridius hirtus, Enicmus rugosus and E fungicola seem to be obligate myxomycete feeders, while Corticarina truncatella was clearly facultative. 13 species of myxomycetes were recorded on 9 species of moss and 3 species of liverwort developing on decaying wood or bark in the Crimean Nature Reserve. Relations between myxomycetes and bryophytes on woody substrata are spatial rather than trophic, and are possibly regulated by specific microclimatic conditions inside bryophyte thallomes. 69 species of myxomycetes were found co-existing with 36 species of ascomycetes, 21 species of basidiomycetes and 9 species of anamorphic fungi in the Crimean Nature Reserve. Associations formed by myxomycetes and fungi on different woody substrata are analyzed.

  7. SPHERE IRDIS and IFS astrometric strategy and calibration

    CERN Document Server

    Maire, Anne-Lise; Dohlen, Kjetil; Lagrange, Anne-Marie; Gratton, Raffaele; Chauvin, Gael; Desidera, Silvano; Girard, Julien H; Milli, Julien; Vigan, Arthur; Zins, Gerard; Delorme, Philippe; Beuzit, Jean-Luc; Claudi, Riccardo U; Feldt, Markus; Mouillet, David; Puget, Pascal; Turatto, Massimo; Wildi, Francois

    2016-01-01

    We present the current results of the astrometric characterization of the VLT planet finder SPHERE over 2 years of on-sky operations. We first describe the criteria for the selection of the astrometric fields used for calibrating the science data: binaries, multiple systems, and stellar clusters. The analysis includes measurements of the pixel scale and the position angle with respect to the North for both near-infrared subsystems, the camera IRDIS and the integral field spectrometer IFS, as well as the distortion for the IRDIS camera. The IRDIS distortion is shown to be dominated by an anamorphism of 0.60+/-0.02% between the horizontal and vertical directions of the detector, i.e. 6 mas at 1". The anamorphism is produced by the cylindrical mirrors in the common path structure hence common to all three SPHERE science subsystems (IRDIS, IFS, and ZIMPOL), except for the relative orientation of their field of view. The current estimates of the pixel scale and North angle for IRDIS are 12.255+/-0.009 milliarcseco...

  8. Efficient Coupler for a Bessel Beam Dispersive Element

    Science.gov (United States)

    Savchenkov, Anatoliy; Iltchenko, Vladimir; Matsko, Andrey; Le, Thanh; Yu, nan; Maleki, Lute

    2008-01-01

    A document discusses overcoming efficient optical coupling to high orbital momentum modes by slightly bending the taper dispersive element. This little shape distortion is not enough to scramble the modes, but it allows the use of regular, free-beam prism coupling, fiber coupling, or planar fiber on-chip coupling with, ultimately, 100 percent efficiency. The Bessel-beam waveguide is bent near the contact with the coupler, or a curved coupler is used. In this case, every Bessel-beam mode can be successfully coupled to a collimated Gaussian beam. Recently developed Bessel-beam waveguides allow long optical delay and very high dispersion. Delay values may vary from nanoseconds to microseconds, and dispersion promises to be at 100 s/nm. Optical setup consisted of a red laser, an anamorphic prism pair, two prism couplers, and a bent, single-mode fiber attached to prisms. The coupling rate increased substantially and corresponded to the value determined by the anamorphic prism pair.

  9. 虫草多型现象的5.8S rDNA 和ITS2 序列测定研究%MOLECULAR EVIDENCE OF POLYMORPHISM IN CORDYCEPS BASED ON 5.8S rDNA AND ITS2 SEQUENCES

    Institute of Scientific and Technical Information of China (English)

    康冀川; 梁宗琦; 刘爱英; 理查Y.C.孔

    2000-01-01

    Cordyceps gansuensis, C. sinensis and C. militaris are reexamined in this study.Cordyceps gansuensis morphologically resembles C.sinensis, while C.militaris has two different types of anamorphs, the Paecilomyces-type and the Verticillium-type. Analysis of DNA sequences of the 5.8S rRNA gene and partial internal transcribed spacer (ITS2) region of the fungi indicate that C.gansuensis and C.sinensis are conspecific and that the two types of anamorphs of C.militaris are diverse at molecular level.%新定名的甘肃虫草Cordyceps gansuensi与冬虫夏草Cordyceps sinensi形态相似.蛹虫草Cordyceps militaris具有拟青霉型(Paecilomyces-type)和轮枝孢型(Verticillium-type)两类无性型.此研究对5.8SrRNA基因及ITS2间区DNA序列的分析结果表明,甘肃虫草和冬虫夏草的DNA序列相同,属于同一种;蛹虫草的两类无性型具有分子水平上的遗传趋异性.

  10. Enhancement of a PALCoS display efficiency by reducing the influence of different non-desired phenomena

    Science.gov (United States)

    Lizana, Ángel; Lobato, Laura; Márquez, Andrés; Moreno, Ignacio; Iemmi, Claudio; Campos, Juan

    2011-09-01

    This work presents a study of Parallel Aligned (PA) LCoS displays performance for their use to generate Diffractive Optical Elements (DOEs). First, we provide experimental evidences of two different physical phenomena, originated by the electrical addressing schemes used in LCoS displays, which degrade the efficiency of these devices. We refer to the time-fluctuations of the phase and the anamorphic phenomena. Besides, we propose different strategies to diminish the influence of these physical phenomena. First, a methodology based on the minimum Euclidian distance is proposed, leading to the minimization of the time-fluctuations of the phase influence. Second, by applying frequency dependent Look-Up Tables (LUTs) for the phase modulation, we demonstrate how the anamorphic response of the PALCoS display can be notably reduced. Finally, the application of these strategies leads to the best possible PALCoS display configuration in terms of efficiency. To show the significant improvement achieved on the DOEs efficiency, this optimized PALCoS display configuration is tested by experimentally generating diverse DOEs.

  11. 木霉菌属的定义及其属下分类%Delineation of the genus Trichoderma and its sub-genus division

    Institute of Scientific and Technical Information of China (English)

    杨合同; 唐文华; 徐砚珂; 王加宁; 姚碗生

    2002-01-01

    本文总结了木霉菌属的界定以及木霉菌属的属下分类.Bissett等人把木霉菌属(Trichoderma)分为5个组,共31个种.Hypocreanum组包括一个种,即T.lactea;Longibrachiatum组包括4个种,即T.longibrachiatum, T. citroviride, T. pseudokoingii 和 T. parceramosum; Saturnisporum 组包括2个种, 即T. saturnisporum 和 T. ghaneuse ; Pach ybasium 组包括20个种, 即T. crassum , T. croceum , T. f asciculatum , T. fertile, T. flavo f uscum , Trichoderma anamorph of Hypocrea gelatinosa, T. hamatum, T. harzianum, T. longipilis, T. minutisporum, T. oblongisporum, T. polysporum, T. pubescens, Trichoderma anamorph of Hypocrea semiorbis, T. spirale,T. strictipilis, T. striggosum, T. tomentosum 和 T. virens; Trichoderma 组包括4个种, 即T. viride,T.aureoviride,T.koningii和T.atroviride.以上是木霉菌属目前最完整的分类体系.

  12. Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium

    DEFF Research Database (Denmark)

    Samson, R.A.; Yilmaz, N.; Houbraken, J.;

    2011-01-01

    The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified in Talaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talarom......The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified in Talaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing...... that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene....... Talaromyces species and most species of Penicillium subgenus Biverticillium sensu Pitt reside in a monophyletic clade distant from species of other subgenera of Penicillium. For detailed phylogenetic analysis of species relationships, the ITS region (incl. 5.8S nrDNA) was sequenced for the available type...

  13. A Beauveria phylogeny inferred from nuclear ITS and EF1-alpha sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs.

    Science.gov (United States)

    Rehner, Stephen A; Buckley, Ellen

    2005-01-01

    Beauveria is a globally distributed genus of soil-borne entomopathogenic hyphomycetes of interest as a model system for the study of entomopathogenesis and the biological control of pest insects. Species recognition in Beauveria is difficult due to a lack of taxonomically informative morphology. This has impeded assessment of species diversity in this genus and investigation of their natural history. A gene-genealogical approach was used to investigate molecular phylogenetic diversity of Beauveria and several presumptively related Cordyceps species. Analyses were based on nuclear ribosomal internal transcribed spacer (ITS) and elongation factor 1-alpha (EF1-alpha) sequences for 86 exemplar isolates from diverse geographic origins, habitats and insect hosts. Phylogenetic trees were inferred using maximum parsimony and Bayesian likelihood methods. Six well supported clades within Beauveria, provisionally designated A-F, were resolved in the EF1-alpha and combined gene phylogenies. Beauveria bassiana, a ubiquitous species that is characterized morphologically by globose to subglobose conidia, was determined to be non-monophyletic and consists of two unrelated lineages, clades A and C. Clade A is globally distributed and includes the Asian teleomorph Cordyceps staphylinidaecola and its probable synonym C. bassiana. All isolates contained in Clade C are anamorphic and originate from Europe and North America. Clade B includes isolates of B. brongniartii, a Eurasian species complex characterized by ellipsoidal conidia. Clade D includes B. caledonica and B. vermiconia, which produce cylindrical and comma-shaped conidia, respectively. Clade E, from Asia, includes Beauveria anamorphs and a Cordyceps teleomorph that both produce ellipsoidal conidia. Clade F, the basal branch in the Beauveria phylogeny includes the South American species B. amorpha, which produces cylindrical conidia. Lineage diversity detected within clades A, B and C suggests that prevailing morphological

  14. Diversity and taxonomy of endophytes from Leymus chinensis in the Inner Mongolia steppe of China.

    Science.gov (United States)

    Zhu, Min-Jie; Ren, An-Zhi; Wen, Wei; Gao, Yu-Bao

    2013-03-01

    Epichloë species and their anamorphic relatives in genus Neotyphodium are fungal symbionts of grasses ubiquitously existing in temperate regions all over the world. To date, 13 Epichloë species and 22 Neotyphodium species have been formally described, based on morphological characters and phylogenetic analyses. Leymus chinensis (Poaceae) is a dominant grass native to the Inner Mongolia steppe of China. Previously, it was reported to harbor endophytes, but little was known about these endophytes. To investigate their diversity and taxonomy, 96 fungal isolates were obtained from three field populations of L. chinensis. The isolates were classified into three morphotypes based on morphological characters and phylogenetic analyses of sequences of genes for β-tubulin (tubB), translation elongation factor 1-α (tefA), and actin (actG). The dominant morphotype, morphotype I, was identified as a choke disease endophyte, Epichloë bromicola. This broadened the host range and phylogenetic definition of E. bromicola.

  15. Security enhancement of a phase-truncation based image encryption algorithm.

    Science.gov (United States)

    Wang, Xiaogang; Zhao, Daomu

    2011-12-20

    The asymmetric cryptosystem, which is based on phase-truncated Fourier transforms (PTFTs), can break the linearity of conventional systems. However, it has been proven to be vulnerable to a specific attack based on iterative Fourier transforms when the two random phase masks are used as public keys to encrypt different plaintexts. An improvement from the asymmetric cryptosystem may be taken by relocating the amplitude values in the output plane. In this paper, two different methods are adopted to realize the amplitude modulation of the output image. The first one is to extend the PTFT-based asymmetrical cryptosystem into the anamorphic fractional Fourier transform domain directly, and the second is to add an amplitude mask in the Fourier plane of the encryption scheme. Some numerical simulations are presented to prove the good performance of the proposed cryptosystems.

  16. Endophytic fungi diversity of aquatic/riparian plants and their antifungal activity in vitro.

    Science.gov (United States)

    Li, Hai-Yan; Zhao, Chun-An; Liu, Chen-Jian; Xu, Xiao-Fei

    2010-02-01

    Two hundred and fourteen endophytic fungi were isolated from 500 segments of aquatic/riparian plants Ottelia acuminata, Myriophyllum verticillatum, Equisetum arvense, Cardamine multijuga, and Impatiens chinensis. They were identified to 31 taxa in which Cladosporium, Fusarium, and Geotrichum were the dominant genera. Among all isolates, 169 (79%) were anamorphic fungi, 1 (0.5%) was an teleomorphic ascomycete and 44 (21%) were sterile mycelia. There were significant differences in the colonization frequency of endophytes between the five plant species (X~2=51.128, P<0.001, Chi-square test). The riparian plants harboured more endophytes than the submerged plants. The antifungal activity of these isolates against Fusarium solani and Phytophthora nicotianae in vitro were tested and 28 (13.1%) isolates showed antifungal activities with more than 30% growth inhibition rate against the two pathogens.

  17. Conflation: a new type of accelerated expansion

    Science.gov (United States)

    Fertig, Angelika; Lehners, Jean-Luc; Mallwitz, Enno

    2016-08-01

    In the framework of scalar-tensor theories of gravity, we construct a new kind of cosmological model that conflates inflation and ekpyrosis. During a phase of conflation, the universe undergoes accelerated expansion, but with crucial differences compared to ordinary inflation. In particular, the potential energy is negative, which is of interest for supergravity and string theory where both negative potentials and the required scalar-tensor couplings are rather natural. A distinguishing feature of the model is that, for a large parameter range, it does not significantly amplify adiabatic scalar and tensor fluctuations, and in particular does not lead to eternal inflation and the associated infinities. We also show how density fluctuations in accord with current observations may be generated by adding a second scalar field to the model. Conflation may be viewed as complementary to the recently proposed anamorphic universe of Ijjas and Steinhardt.

  18. Candida middelhoveniana sp. nov., a new yeast species found on the rhizoplane of organically cultivated sugarcane.

    Science.gov (United States)

    Ribeiro, José R de A; Carvalho, Patrícia M B de; Cabral, Anderson de S; Macrae, Andrew; Mendonça-Hagler, Leda C S; Berbara, Ricardo L L; Hagler, Allen N

    2011-10-01

    A novel yeast species within the Metschnikowiaceae is described based on a strain from the sugarcane (Saccharum sp.) rhizoplane of an organically managed farm in Rio de Janeiro, Brazil. The D1/D2 domain of the large subunit ribosomal RNA gene sequence analysis showed that the closest related species were Candida tsuchiyae with 86.2% and Candida thailandica with 86.7% of sequence identity. All three are anamorphs in the Clavispora opuntiae clade. The name Candida middelhoveniana sp. nov. is proposed to accommodate this highly divergent organism with the type strain Instituto de Microbiologia, Universidade Federal do Rio de Janeiro (IMUFRJ) 51965(T) (=Centraalbureau voor Schimmelcultures (CBS) 12306(T), Universidade Federal de Minas Gerais (UFMG)-70(T), DBVPG 8031(T)) and the GenBank/EMBL/DDBJ accession number for the D1/D2 domain LSU rDNA sequence is FN428871. The Mycobank deposit number is MB 519801.

  19. Sporothrix schenckii sensu stricto isolated from soil in an armadillo's burrow.

    Science.gov (United States)

    Rodrigues, Anderson Messias; Bagagli, Eduardo; de Camargo, Zoilo Pires; Bosco, Sandra de Moraes Gimenes

    2014-04-01

    Sporotrichosis is a polymorphic disease of man and animals caused by traumatic implantation of propagules into the skin and subcutaneous tissue. Pathogenic species includes S. brasiliensis, S. schenckii, S. globosa and S. luriei. The disease is remarkable for its occurrence as sapronoses and/or zoonosis outbreaks in tropical and subtropical areas; although, the ecology of the clinical clade is still puzzling. Here, we describe an anamorphic Sporothrix strain isolated from soil in an armadillo's burrow, which was located in a hyper endemic area of Paracoccidioidomycosis in Brazil. This isolate was identified as S. schenckii sensu stricto (Clade IIa) based on morphological and physiological characteristics and phylogenetic analyses of calmodulin sequences. We then discuss the role of the nine-banded armadillo Dasypus novemcinctus as a natural carrier of Sporothrix propagules to better understand Sporothrix sources in nature and reveal essential aspects about the pathogen's eco-epidemiology.

  20. Cochliobolus hawaiiensis Sinusitis, a Tropical Disease? A Case Report and Review of the Literature.

    Science.gov (United States)

    Gautier, Magali; Michel, Justin; Normand, Anne-Cécile; Cassagne, Carole; Piarroux, Renaud; Ranque, Stéphane

    2015-08-01

    A sinusitis caused by Cochliobolus hawaiiensis (anamorph: Bipolaris hawaiiensis) was diagnosed in metropolitan France in a patient originating from New Caledonia. The patient completely recovered after surgical treatment consisting in marsupialization of the mucoceles and removal of the fungus balls located in the left nasal cavity and the left maxilla and ethmoid sinuses. One year after, both endoscopic examination and CT scan of the sinuses were normal. Various clinical presentations of diseases associated with C. hawaiiensis have been reported. A review of the literature indicates that although C. hawaiiensis is very rarely reported in Europe, it is one of the major rhinosinusitis agents in areas with a relatively warmer climate, such as India or Southwestern USA. This is the first report of a sinusitis caused by C. hawaiiensis diagnosed in France, with a total recovery outcome.

  1. EAGLE ISS - A modular twin-channel integral-field near-IR spectrograph

    CERN Document Server

    Hastings, P R; Vives, S; Vola, P; Wells, M; Evans, C J

    2010-01-01

    The ISS (Integral-field Spectrograph System) has been designed as part of the EAGLE Phase A Instrument Study for the E-ELT. It consists of two input channels of 1.65x1.65 arcsec field-of-view, each reconfigured spatially by an image-slicing integral-field unit to feed a single near-IR spectrograph using cryogenic volume-phase-holographic (VPH) gratings to disperse the image spectrally. A 4k x 4k array detector array records the dispersed images. The optical design employs anamorphic magnification, image slicing, VPH gratings scanned with a novel cryo-mechanism and a three-lens camera. The mechanical implementation features IFU optics in Zerodur, a modular bench structure and a number of high-precision cryo-mechanisms.

  2. Frequency of endophytic fungi isolated from Dendrobium crumenatum (Pigeon orchid and antimicrobial activity

    Directory of Open Access Journals (Sweden)

    WIBOWO MANGUNWARDOYO

    2012-01-01

    Full Text Available Mangunwardoyo W, Suciatmih, Gandjar I. 2012. Frequency of endophytic fungi isolated from Dendrobium crumenatum (Pigeon orchid and antimicrobial activity. Biodiversitas 13: 34-39. The aims of this research was to isolate and study the frequency of endophytic fungi from roots, bulbous, stems, and leaves of Dendrobium crumenatum Sw. (pigeon orchid collected from Tanah Baru housing area, Bogor Botanical Garden, and Herbarium Bogoriense; and to assess for antimicrobial activity against Candida albicans ATCC 2091, Candida tropicalis LIPIMC 203, Escherichia coli ATCC 25922, Bacillus subtilis ATCC 6633 and Staphylococcus aureus ATCC 25923. Twelve species of endophytic fungi were identified from 60 samples obtained from D. crumenatum. Guignardia endophyllicola (anamorph: Phyllosticta capitalensis were the dominant endophytic fungi. Screening of the anti-microorganism activity of the endophytic fungi revealed that Fusarium nivale inhibited C albicans and C. tropicalis. All specimens did not inhibit B. subtilis, E. coli, and S. aureus.

  3. Description of Groenewaldozyma gen. nov. for placement of Candida auringiensis, Candida salmanticensis and Candida tartarivorans.

    Science.gov (United States)

    Kurtzman, Cletus P

    2016-07-01

    DNA sequence analyses have demonstrated that species of the polyphyletic anamorphic ascomycete genus Candida may be members of described teleomorphic genera, members of the Candida tropicalis clade upon which the genus Candida is circumscribed, or members of isolated clades that represent undescribed genera. From phylogenetic analysis of gene sequences from nuclear large subunit rRNA, mitochondrial small subunit rRNA and cytochrome oxidase II, Candida auringiensis (NRRL Y-17674(T), CBS 6913(T)), Candida salmanticensis (NRRL Y-17090(T), CBS 5121(T)), and Candida tartarivorans (NRRL Y-27291(T), CBS 7955(T)) were shown to be members of an isolated clade and are proposed for reclassification in the genus Groenewaldozyma gen. nov. (MycoBank MB 815817). Neighbouring taxa include species of the Wickerhamiella clade and Candida blankii.

  4. Video-rate imaging of microcirculation with single-exposure oblique back-illumination microscopy

    Science.gov (United States)

    Ford, Tim N.; Mertz, Jerome

    2013-06-01

    Oblique back-illumination microscopy (OBM) is a new technique for simultaneous, independent measurements of phase gradients and absorption in thick scattering tissues based on widefield imaging. To date, OBM has been used with sequential camera exposures, which reduces temporal resolution, and can produce motion artifacts in dynamic samples. Here, a variation of OBM that allows single-exposure operation with wavelength multiplexing and image splitting with a Wollaston prism is introduced. Asymmetric anamorphic distortion induced by the prism is characterized and corrected in real time using a graphics-processing unit. To demonstrate the capacity of single-exposure OBM to perform artifact-free imaging of blood flow, video-rate movies of microcirculation in ovo in the chorioallantoic membrane of the developing chick are presented. Imaging is performed with a high-resolution rigid Hopkins lens suitable for endoscopy.

  5. Product inhibition of five Hypocrea jecorina cellulases

    DEFF Research Database (Denmark)

    Murphy, Leigh; Westh, Peter; Bohlin, Christina;

    2013-01-01

    Product inhibition of cellulolytic enzymes has been deemed a critical factor in the industrial saccharification of cellulosic biomass. Several investigations have addressed this problem using crude enzyme preparations or commercial (mixed) cellulase products, but quantitative information...... on individual cellulases hydrolyzing insoluble cellulose remains insufficient. Such knowledge is necessary to pinpoint and quantify inhibitory weak-links in cellulose hydrolysis, but has proven challenging to come by. Here we show that product inhibition of mono-component cellulases hydrolyzing unmodified...... cellulose may be monitored by calorimetry. The key advantage of this approach is that it directly measures the rate of hydrolysis while being essentially blind to the background of added product. We investigated the five major cellulases from Hypocrea jecorina (anamorph: Tricoderma reesei), Cel7A (formerly...

  6. Exophiala crusticola anam. nov. (affinity Herpotrichiellaceae), a novel black yeast from biological soil crusts in the Western United States.

    Science.gov (United States)

    Bates, Scott T; Reddy, Gundlapally S N; Garcia-Pichel, Ferran

    2006-11-01

    A novel black yeast-like fungus, Exophiala crusticola, is described based on two closely related isolates from biological soil crust (BSC) samples collected on the Colorado Plateau (Utah) and in the Great Basin desert (Oregon), USA. Their morphology places them in the anamorphic genus Exophiala, having affinities to the family Herpotrichiellaceae (Ascomycota). Phylogenetic analysis of their D1/D2 large subunit nuclear ribosomal RNA (LSU nrRNA) gene sequences suggests that they represent a distinct species. The closest known putative relative to Exophiala crusticola is Capronia coronata Samuels, isolated from decorticated wood in Westland County, New Zealand. The holotype for Exophiala crusticola anam. nov. is UAMH 10686 and the type strain is CP141bT (=ATCC MYA-3639T=CBS 119970T=DSM 16793T). Dark-pigmented fungi appear to constitute an important heterotrophic component of soil crusts and Exophiala crusticola represents the first description of a dematiaceous fungus isolated from BSCs.

  7. Species concepts and biodiversity in Trichoderma and Hypocrea: from aggregate species to species clusters?

    Institute of Scientific and Technical Information of China (English)

    DRUZHININA Irina; KUBICEK Christian P.

    2005-01-01

    Trichoderma/Hypocrea is a genus of soil-borne or wood-decaying fungi containing members important to mankind as producers of industrial enzymes and biocontrol agents against plant pathogens, but also as opportunistic pathogens of immunocompromised humans. Species identification, while essential in view of the controversial properties of taxa ofthis genus, has been problematic by traditional methods. Here we will present a critical survey of the various identification methods in use. In addition,we will present an update on the taxonomy and phylogeny of the 88 taxa (which occur as 14 holomorphs, 49 teleomorphs and 25 anamorphs in nature) of Trichoderma/Hypocrea that have been confirmed by a combination of morphological, physiological and genetic approaches.

  8. Sensitivity of Mycosphaerella graminicola isolates to demethylation-inhibiting (DMI) fungicides

    DEFF Research Database (Denmark)

    Ronis, Antanas; Jørgensen, Lise Nistrup; Semaskiene, Roma

    2014-01-01

    Mycosphaerella graminicola (Fuckel) J. Schröt. (anamorph Zymoseptoria tritici (Desm.) Quaedvlieg & Crous) causes Septoria leaf blotch disease of wheat. The disease can be responsible for yield losses of 30–50% and, when severe, requires management with a fungicide. Single picnidia isolates...... collected from different locations of Lithuania were tested in vitro for sensitivity to demethylation-inhibiting (DMI) fungicides epoxiconazole, cyproconazole and prothioconazole. Fungicide concentrations were chosen from the proposed Fungicide Resistance Action Committee (FRAC) methods. Microtitre plates...... that fungicides epoxiconazole and prothioconazole significantly reduced the area under the disease progress curve (AUDPC) values of Septoria leaf blotch compared with untreated plots in winter wheat. In most cases, a single fungicide application significantly increased grain yield and a thousand grain weight...

  9. EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2011 update)

    DEFF Research Database (Denmark)

    Hald, Tine

    EFSA is requested to assess the safety of a broad range of biological agents (including microorganisms and viruses) in the context of notifications for market authorisation as sources of food and feed additives, enzymes and plant protection products. The qualified presumption of safety (QPS......) assessment was developed by EFSA for its own use to provide a generic risk assessment approach applicable across EFSA’s scientific Panels, for biological agents notified for intentional use in the whole food chain. The safety of unambiguously defined biological agents at the highest taxonomic unit...... recommendations. The anamorph yeast form Phaffia rhodozyma of Xanthophyllomyces dendrorhous was included on the QPS list and to the qualification for yeasts ‘absence of resistance to antimycotics used for medical treatment of yeast infections’, the sentence was added that ‘in the case of Saccharomyces cerevisiae...

  10. Characteristics and diversity of Rhizoctonia spp. population in soil of selected forest bare-root nurseries in Poland

    Directory of Open Access Journals (Sweden)

    Marta Bełka

    2014-12-01

    Full Text Available Fourty three Rhizoctonia isolates obtained from four forest nurseries situated in the Wielkopolska region (central-western Poland has been proved as multinucleate (anamorph – R. solani. They represented four anastomosis groups (AG: AG1-IC, AG-5, AG4-HG2 and AG2-1. Three AGs were found in Jarocin nursery (AG-5, AG4-HG2 and AG2-1, two in Łopuchówko (AG-5 and AG4-HG2 and one in Konstantynowo (AG1-IC and Pniewy (AG-5. All isolates were highly pathogenic to Scots pine (Pinus sylvestris seedlings and pose a large damping-off threat to the seedlings in the nurseries with single AG and in those where more AGs exists.

  11. Morphological characteristics and DNA sequence analysis of Petriella setifera and Oidiodendron setiferum from twigs of diseased oak

    Directory of Open Access Journals (Sweden)

    Hanna Kwaśna

    2014-08-01

    Full Text Available Examination of isolates of Petriella setifera and Oidiodendron setiferum revealed new diagnostic morphological charactcristics. Chlamydosporcs formed by P. setifera, isolated from twigs of sessile oak (Quercus petraea showing symptoms of oak decline, are described for the first time. The first pictures of P. setifera anamorphs since the publication of its original description in 1912 are presented. Isolates of O. setiferum, from sessile oak twigs and from a log of Scots pine (Pinus sylvestris, were found to have swollen, hyaline, thin-walled, sterile apices on the non-fertile hairs surrounding the fertile heads of conidiophores. They also had numerous coils formed by thin hyphae in the submerged mycelium in agar culture. The taxonomy of both fungi was confirmed by rDNA sequence analysis.

  12. Metulocladosporiella gen. nov. for the causal organism of Cladosporium speckle disease of banana.

    Science.gov (United States)

    Crous, Pedro W; Schroers, Hans-Josef; Groenewald, Johannes Z; Braun, Uwe; Schubert, Konstanze

    2006-03-01

    Cladosporium musae, a widespread leaf-spotting hyphomycete on Musa spp., is genetically and morphologically distinct from Cladosporium s. str. (Davidiella anamorphs, Mycosphaerellaceae, Dothideales). DNA sequence data derived from the ITS and LSU gene regions of C. musae isolates show that this species is part of a large group of hyphomycetes in the Chaetothyriales with dematiaceous blastoconidia in acropetal chains. Cladosporium adianticola, a foliicolous hyphomycete known from leaf litter in Cuba is also a member of this clade and is closely related to C. musae. A comparison with other genera in the Cladosporium complex revealed that C. musae belongs to a lineage for which no generic name is currently available, and for which the genus Metulocladosporiella gen. nov. is proposed. Two species of Metulocladosporiella are currently known, namely M. musae, which is widely distributed, and M. musicola sp. nov., which is currently known from Africa.

  13. Ten inch Planar Optic Display

    Energy Technology Data Exchange (ETDEWEB)

    Beiser, L. [Beiser (Leo) Inc., Flushing, NY (United States); Veligdan, J. [Brookhaven National Lab., Upton, NY (United States)

    1996-04-01

    A Planar Optic Display (POD) is being built and tested for suitability as a high brightness replacement for the cathode ray tube, (CRT). The POD display technology utilizes a laminated optical waveguide structure which allows a projection type of display to be constructed in a thin (I to 2 inch) housing. Inherent in the optical waveguide is a black cladding matrix which gives the display a black appearance leading to very high contrast. A Digital Micromirror Device, (DMD) from Texas Instruments is used to create video images in conjunction with a 100 milliwatt green solid state laser. An anamorphic optical system is used to inject light into the POD to form a stigmatic image. In addition to the design of the POD screen, we discuss: image formation, image projection, and optical design constraints.

  14. Distribution of Erysiphe platani (Erysiphales in Ukraine

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    Vasyl P. Heluta

    2013-12-01

    Full Text Available Information is provided on Erysiphe platani, a newly invasive fungus in Ukraine. The anamorph of this North American powdery mildew was first recorded in Ukraine in 1986 on Platanus orientalis in the Nikita Botanical Garden (Crimea. Later, it was found in other localities of the Crimean peninsula, and in Odessa and Odessa region on three species of plane, namely P. × hispanica, P. occidentalis and P. orientalis. Spread of the fungus was epiphytotic. This mildew significantly reduces the ornamental value of plane trees, which are often planted in public open spaces within urban areas of southern Ukraine. Recently, E. platani has formed the teleomorph in this region. Morphologically, the Ukrainian material is slightly different from the species description, viz. appendages are longer (up to 3 times the chasmothecial diam., often with less compact apices.

  15. Genetic manipulation of Xanthophyllomyces dendrorhous and Phaffia rhodozyma.

    Science.gov (United States)

    Lin, Guangyun; Bultman, Joanna; Johnson, Eric A; Fell, Jack W

    2012-01-01

    The yeasts Xanthophyllomyces dendrorhous (teleomorph) and Phaffia rhodozyma (anamorph) are of basidiomycetous affinity and have the unique property among yeasts of producing the carotenoid pigment astaxanthin. Astaxanthin imparts the attractive coloration to salmonids, crustaceans, and several birds such as the flamingo, and it has considerable economic value. Microbiological and genetic techniques for manipulation are rudimentary in the yeast, while their utility would be valuable for strain development including hypermutants that overproduce astaxanthin. Here we describe methods for manipulation of the yeast, including induction of the sexual stage with basidiospore formation, methods for isolation of mutants (particularly mutants affected in carotenoid biosynthesis) as well as techniques for isolation and analysis of carotenoids. These methods are valuable for understanding the biology and enhancing the biotechnology value of the yeast.

  16. Baudoinia, a new genus to accommodate Torula compniacensis.

    Science.gov (United States)

    Scott, James A; Untereiner, Wendy A; Ewaze, Juliet O; Wong, Bess; Doyle, David

    2007-01-01

    Baudoinia gen. nov. is described to accommodate Torula compniacensis. Reported originally from the walls of buildings near brandy maturation warehouses in Cognac, France, species of Baudoinia are cosmopolitan colonists of exposed surfaces subjected to large diurnal temperature shifts, episodic high relative humidity and wetting, and ambient airborne ethanol. Morphologically B. compniacensis resembles some anamorphic Mycosphaerellaceae in possessing dark brown, nonseptate or uniseptate conidia with coarsely roughened walls that are borne acropetally in unbranched chains and released by schizolytic dehiscence. Analysis of partial nuclear rDNA SSU sequences positions B. compniacensis in the order Capnodiales and reveals that it is most closely related to the microcolonial genus Friedmanniomyces. Heat resistance is induced by brief sublethal temperature exposure.

  17. CODEX optics

    Science.gov (United States)

    Delabre, Bernard; Manescau, Antonio

    2010-07-01

    CODEX is a high resolution spectrograph for the ESO E-ELT. A classical spectrograph can only achieve a resolution of about 120.000 on a 42 m telescope with extremely large echelle gratings and cameras. This paper describes in detail the optical concept of CODEX, which uses only optical elements size similar to those in current high resolution spectrographs. This design is based on slicers, anamorphic beams and slanted VPHG as cross dispersers. In this new version of the CODEX design, no special expensive materials as calcium fluoride or abnormal dispersion glasses are needed. The optical quality is excellent and compatible with 10K x 10K detectors with 10 μm pixels.

  18. A phylogenetic study on galactose-containing Candida species based on 18S ribosomal DNA sequences.

    Science.gov (United States)

    Suzuki, Motofumi; Suh, Sung-Oui; Sugita, Takashi; Nakase, Takashi

    1999-10-01

    Phylogenetic relationships of 33 Candida species containing galactose in the cells were investigated by using 18S ribosomal DNA sequence analysis. Galactose-containing Candida species and galactose-containing species from nine ascomycetous genera were a heterogeneous assemblage. They were divided into three clusters (II, III, and IV) which were phylogenetically distant from cluster I, comprising 9 galactose-lacking Candida species, C. glabrata, C. holmii, C. krusei, C. tropicalis (the type species of Candida), C. albicans, C. viswanathii, C. maltosa, C. parapsilosis, C. guilliermondii, and C. lusitaniae, and 17 related ascomycetous yeasts. These three clusters were also phylogenetically distant from Schizosaccharomyces pombe, which contains galactomannan in its cell wall. Cluster II comprised C. magnoliae, C. vaccinii, C. apis, C. gropengiesseri, C. etchellsii, C. floricola, C. lactiscondensi, Wickerhamiella domercqiae, C. versatilis, C. azyma, C. vanderwaltii, C. pararugosa, C. sorbophila, C. spandovensis, C. galacta, C. ingens, C. incommunis, Yarrowia lipolytica, Galactomyces geotrichum, and Dipodascus albidus. Cluster III comprised C. tepae, C. antillancae and its synonym C. bondarzewiae, C. ancudensis, C. petrohuensis, C. santjacobensis, C. ciferrii (anamorph of Stephanoascus ciferrii), Arxula terrestris, C. castrensis, C. valdiviana, C. paludigena, C. blankii, C. salmanticensis, C. auringiensis, C. bertae, and its synonym C. bertae var. chiloensis, C. edax (anamorph of Stephanoascus smithiae), Arxula adeninivorans, and C. steatolytica (synonym of Zygoascus hellenicus). Cluster IV comprised C. cantarellii, C. vinaria, Dipodascopsis uninucleata, and Lipomyces lipofer. Two galactose-lacking and Q-8-forming species, C. stellata and Pichia pastoris, and 5 galactose-lacking and Q-9-forming species, C. apicola, C. bombi, C. bombicola, C. geochares, and C. insectalens, were included in Cluster II. Two galactose-lacking and Q-9-forming species, C. drimydis and C

  19. Diversity of Endophytic Fungi from Red Ginger (Zingiber officinale Rosc. Plant and Their Inhibitory Effect to Fusarium oxysporum Plant Pathogenic Fungi

    Directory of Open Access Journals (Sweden)

    SIHEGIKO KANAYA

    2013-09-01

    Full Text Available Indonesia has been known as a country with high medicinal plant diversity. One of the most common medicinal plant from Indonesia is red ginger (Zingiber officinale Rosc.. Nevertheless, limited studies of endophytic fungi associated with these medicinal plants are hitherto available. The objectives of this research were to study the diversity of endophytic fungi on red ginger and to analyze their potential as a source of antifungal agent. All parts of plant organs such as leaf, rhizome, root, and stem were subjected for isolation. Fungal identification was carried out by using a combination of morphological characteristic and molecular analysis of DNA sequence generated from ITS rDNA region. Thirty endophytic fungi were successfully isolated from leaf, rhizome, root, and stem of red ginger plant. Antagonistic activity was tested against Fusarium oxysporum, a pathogenic fungus on plants, using an antagonistic assay. Based on this approach, the fungi were assigned as Acremonium macroclavatum, Beltraniella sp., Cochliobolus geniculatus and its anamorphic stage Curvularia affinis, Fusarium solani, Glomerella cingulata, and its anamorphic stage Colletotrichum gloeosporoides, Lecanicillium kalimantanense, Myrothecium verrucaria, Neonectria punicea, Periconia macrospinosa, Rhizopycnis vagum, and Talaromyces assiutensis. R. vagum was found specifically on root whereas C. affinis, L. kalimantanense, and M. verrucaria were found on stem of red ginger plant. A. macroclavatum was found specifically in red ginger plant’s organ which located under the ground, whereas C. affinis was found from shoot or organ which located above the ground. The antagonistic activity of isolated endophytic fungi against F. oxysporum varied with the inhibition value range from 1.4 to 68.8%. C. affinis (JMbt7, F. solani (JMd14, and G. cingulata (JMr2 had significantly high antagonistic activity with the value above 65%; and R. vagum (JMa4 and C. geniculatus (JMbt9 had

  20. Hidden diversity behind the zombie-ant fungus Ophiocordyceps unilateralis: four new species described from carpenter ants in Minas Gerais, Brazil.

    Directory of Open Access Journals (Sweden)

    Harry C Evans

    Full Text Available BACKGROUND: Ophiocordyceps unilateralis (Clavicipitaceae: Hypocreales is a fungal pathogen specific to ants of the tribe Camponotini (Formicinae: Formicidae with a pantropical distribution. This so-called zombie or brain-manipulating fungus alters the behaviour of the ant host, causing it to die in an exposed position, typically clinging onto and biting into the adaxial surface of shrub leaves. We (HCE and DPH are currently undertaking a worldwide survey to assess the taxonomy and ecology of this highly variable species. METHODS: We formally describe and name four new species belonging to the O. unilateralis species complex collected from remnant Atlantic rainforest in the south-eastern region (Zona da Mata of the State of Minas Gerais, Brazil. Fully illustrated descriptions of both the asexual (anamorph and sexual (teleomorph stages are provided for each species. The new names are registered in Index Fungorum (registration.indexfungorum.org and have received IF numbers. This paper is also a test case for the electronic publication of new names in mycology. CONCLUSIONS: We are only just beginning to understand the taxonomy and ecology of the Ophiocordyceps unilateralis species complex associated with carpenter ants; macroscopically characterised by a single stalk arising from the dorsal neck region of the ant host on which the anamorph occupies the terminal region and the teleomorph occurs as lateral cushions or plates. Each of the four ant species collected--Camponotus rufipes, C. balzani, C. melanoticus and C. novogranadensis--is attacked by a distinct species of Ophiocordyceps readily separated using traditional micromorphology. The new taxa are named according to their ant host.

  1. Non-mycorrhizal fungal endophytes in two orchids of Kaiga forest (Western Ghats), India

    Institute of Scientific and Technical Information of China (English)

    Naga M. Sudheep; Kandikere R. Sridhar

    2012-01-01

    We used standard isolation protocols to explore the endophytic fungal communities in three tissue types of two dominant orchids (Bulbophyllum neilgherrense and Vanda testacea) of the Kaiga forest of the Western Ghats.We surface sterilized and assessed 90 segments of each orchid for the occurrence and diversity of endophytic fungal taxa.The 118 fungal isolates were obtained from root,bulb and leaves of B.neilgherrense,consisting of 17 anamorphic taxa (range,10-15 taxa) with 1.3 fungal taxa per segment (range,1.2-1.4 taxa).Four taxa (Aspergillus flavus,A.niger,Penicillium sp.and morpho sp.1 ) belonged to the core group (11.1%-32.2%).The relative abundance ofA.flavus and morpho sp.1 was more than 10%.A total of 130 fungal isolates from roots,stems and leaves of V.testacea yielded 20 anamorphic taxa (range,11-15 taxa)with 1.4 fungal taxa per segment (range,1.4-1.5 taxa).Aspergillusflavus,A.niger,A.ochraceus,Gliocladium viride,Penicillium sp.and morpho sp.1 belonged to the core group.Relative abundance exceeded 10% for A.flavus,A.niger,and morpho sp.1.The Simpson and Shannon diversity indices were higher in leaf than root or bulb/stem of both orchids.Jaccard's similarity coefficient was higher between root and leaf in both orchids (56.3%-60%) than between other pairs.Our study revealed that the endophytic fungal assemblage and diversity ofB.neilgherrense and V.testacea of Kaiga forest of the Western Ghats were relatively similar between orchids and their tissues.

  2. Polarization/Spatial Combining of Laser-Diode Pump Beams

    Science.gov (United States)

    Gelsinger, Paul; Liu, Duncan

    2008-01-01

    A breadboard version of an optical beam combiner is depicted which make it possible to use the outputs of any or all of four multimode laser diodes to pump a non-planar ring oscillator (NPRO) laser. The output of each laser diode has a single-mode profile in the meridional plane containing an axis denoted the 'fast' axis and a narrower multimode profile in the orthogonal meridional plane, which contains an axis denoted the 'slow' axis and a narrower multimode profile in the orthogonal meridional plane, which contains an axis denoted the 'slow' axis. One of the purposes served by the beam-combining optics is to reduce the fast-axis numerical aperture (NA) of the laser-diode output to match the NA of the optical fiber. Along the slow axis, the unmodified laser-diode NA is already well matched to the fiber optic NA, so no further slow-axis beam shaping is needed. In this beam combiner, the laser-diode outputs are collimated by aspherical lenses, then half-wave plates and polarizing beam splitters are used to combine the four collimated beams into two beams. Spatial combination of the two beams and coupling into the optical fiber is effected by use of anamorphic prisms, mirrors, and a focusing lens. The anamorphic prisms are critical elements in the NA-matching scheme, in that they reduce the fast-axis beam width to 1/6 of its original values. Inasmuch as no slow-axis beam shaping is needed, the collimating and focusing lenses are matched for 1:1 iumaging. Because these lenses are well corrected for infinite conjugates the combiner offers diffraction-limited performance along both the fast and slow axes.

  3. Epidemic and research advance of Citrus Black Spot%柑橘黑斑病(Citrus Black Spot)发生危害现状和研究进展

    Institute of Scientific and Technical Information of China (English)

    王兴红; 陈国庆; 王卫芳; 李红叶

    2011-01-01

    柑橘黑斑病(Citrus Black Spot,CBS)主要危害果实,在果皮上形成各种病斑而影响果实的外观品质和销售价格,严重时可造成田间落果和贮藏期果实腐烂。同时,黑斑病被欧盟列为A1类外来有害生物,美国对此也有严格的限制。因此,该病害影响柑橘鲜果的国际贸易。黑斑病的病原属球座菌(Guignardia),其无性态为叶点霉菌(Phyl-losticta)。宽皮柑橘(Citrus reticulata)、橙类(C.sinensis)和柠檬(C.limon)上为柑橘球座菌(G.citricarpa),无性态为%Citrus Black Spot(CBS) attacks citrus fruits,produces various spots on citrus rind,gives rise to the decrease in external quality and commercial value.It causes immature fruit-dropping in fields or postharvest decaying in storage houses when disease occurs severely.Meanwhile,CBS is regulated as an A1 quarantine pest by several countries of European Union,as well as USA,so international trade of fresh citrus is restricted by this disease.The causal agents of CBS belong to genus Guignardia(anamorph Phyllosticta).G.citricarpa(anamorph P.citricarpa) is responsible to the CBS of mandarins(C.reticulata),oranges(C.sinensis) and lemon(C.limon),whereas P.citriasiana(teleomorph unknown) is responsible to tan spot of pomeloes(C.grandis).In addition,an endophyte,P.capitalensis is commonly present on citrus,which often interferes the detection of CBS.CBS is a common disease in China,significant losses often be leaded to some susceptible varieties.However,the knowledge of CBS is handful in China.To satisfy the requirement of broad readers to full scenario of CBS,in current paper,we integrate the published information of inter-and intra-nation regarding CBS,and give a detail introduction on the aspects of disease history,distribution,significance,symptom,etiology,prevalence,detection control,etc.

  4. Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees.

    Science.gov (United States)

    Damm, U; Fourie, P H; Crous, P W

    2010-06-01

    Species of the genus Coniochaeta (anamorph: Lecythophora) are known as pathogens of woody hosts, but can also cause opportunistic human infections. Several fungi with conidial stages resembling Lecythophora were isolated from necrotic wood samples of Prunus trees in South Africa. In order to reveal their phylogenetic relationships, these fungi were studied on a morphological and molecular (5.8S nrDNA, ITS-1, ITS-2, GAPDH, EF-1alpha, 28S nrDNA, 18S nrDNA) basis. Some of the isolates were identified as Coniochaeta (Sordariomycetes), including C. velutina and two new species, C. africana and C. prunicola. The majority of the isolates, however, formed pycnidial or pseudopycnidial synanamorphs and were not closely related to Coniochaeta. According to their 28S nrDNA phylogeny, they formed two distinct groups, one of which was closely related to Helotiales (Leotiomycetes). The new genus Collophora is proposed, comprising five species that frequently occur in necrotic peach and nectarine wood, namely Co. africana, Co. capensis, Co. paarla, Co. pallida and Co. rubra. The second group was closely related to Phaeomoniella chlamydospora (Eurotiomycetes), occurring mainly in plum wood. Besides P. zymoides occurring on Prunus salicina, four new species are described, namely P. dura, P. effusa, P. prunicola and P. tardicola. In a preliminary inoculation study, pathogenicity was confirmed for some of the new species on apricot, peach or plum wood.

  5. Novel Phaeoacremonium species associated with necrotic wood of Prunus trees.

    Science.gov (United States)

    Damm, U; Mostert, L; Crous, P W; Fourie, P H

    2008-06-01

    The genus Phaeoacremonium is associated with opportunistic human infections, as well as stunted growth and die-back of various woody hosts, especially grapevines. In this study, Phaeoacremonium species were isolated from necrotic woody tissue of Prunus spp. (plum, peach, nectarine and apricot) from different stone fruit growing areas in South Africa. Morphological and cultural characteristics as well as DNA sequence data (5.8S rDNA, ITS1, ITS2, beta-tubulin, actin and 18S rDNA) were used to identify known, and describe novel species. From the total number of wood samples collected (257), 42 Phaeoacremonium isolates were obtained, from which 14 species were identified. Phaeoacremonium scolyti was most frequently isolated, and present on all Prunus species sampled, followed by Togninia minima (anamorph: Pm. aleophilum) and Pm. australiense. Almost all taxa isolated represent new records on Prunus. Furthermore, Pm. australiense,Pm. iranianum, T. fraxinopennsylvanica and Pm. griseorubrum represent new records for South Africa, while Pm. griseorubrum, hitherto only known from humans, is newly reported from a plant host. Five species are newly described, two of which produce a Togninia sexual state. Togninia africana, T. griseo-olivacea and Pm. pallidum are newly described from Prunus armeniaca, while Pm. prunicolum and Pm. fuscum are described from Prunus salicina.

  6. Quantitative inheritance of resistance to Septoria tritici blotch in durum wheat in Tunisia

    Directory of Open Access Journals (Sweden)

    Samia Berraies

    2014-03-01

    Full Text Available Septoria tritici blotch, causal agent Mycosphaerella graminicola (Fuckel J. Schrot. (anamorph: Zymoseptoria tritici Desm., is the major foliar disease of wheat (Triticum aestivum L. in Tunisia causing frequent epidemics on T. turgidum L. var. durum (Desf. Bowden, and important yield and grain quality losses. To determine the inheritance of resistance to septoria, a cross was made using resistant ('Salim' and susceptible ('Karim' cultivars. Parents, and the 149 derived recombinant lines, were tested for resistance to septoria under field conditions during the 2009 and 2010 crop seasons. The inheritance of resistance to septoria was quantitative where a continuous and normal distribution (W = 0.93 was shown among segregate progenies. During 2009 and 2010 crop seasons, the mean disease severities of recombinant inbred lines (RILs ranged from 29.1% to 41.8%, respectively, and 53% of RILs were associated with lower disease severity than the mid-parent value. The severity was significantly affected by Genotype x Year interaction (p < 0.01. Broad sense heritability was 0.55 suggesting a quantitative inheritance of resistance to M. graminicola. These results would imply that genetic resistance to STB could be attributed to additive gene effects. Thus, using identified sources of tolerance to STB in a breeding program would enhance the development of cultivars that are adapted to the prevailing isolates in field conditions.

  7. Screening, isolation, and characterization of glycosyl-hydrolase-producing fungi from desert halophyte plants.

    Science.gov (United States)

    Luziatelli, Francesca; Crognale, Silvia; D'Annibale, Alessandro; Moresi, Mauro; Petruccioli, Maurizio; Ruzzi, Maurizio

    2014-03-01

    Fungal strains naturally occurring on the wood and leaves of the salt-excreting desert tree Tamarix were isolated and characterized for their ability to produce cellulose- and starch-degrading enzymes. Of the 100 isolates, six fungal species were identified by ITS1 sequence analysis. No significant differences were observed among taxa isolated from wood samples of different Tamarix species, while highly salt-tolerant forms related to the genus Scopulariopsis (an anamorphic ascomycete) occurred only on the phylloplane of T. aphylla. All strains had cellulase and amylase activities, but the production of these enzymes was highest in strain D, a Schizophyllum-commune-related form. This strain, when grown on pretreated Tamarix biomass, produced an enzymatic complex containing levels of filter paperase (414 +/- 16 IU/ml) that were higher than those of other S. commune strains. The enzyme complex was used to hydrolyze different lignocellulosic substrates, resulting in a saccharification rate ofpretreated milk thistle (73.5 +/- 1.2%) that was only 10% lower than that obtained with commercial cellulases. Our results support the use of Tamarix biomass as a useful source of cellulolytic and amylolytic fungi and as a good feedstock for the economical production of commercially relevant cellulases and amylases.

  8. Diversity and taxonomy of endophytic xylariaceous fungi from medicinal plants of Dendrobium (Orchidaceae).

    Science.gov (United States)

    Chen, Juan; Zhang, Li-Chun; Xing, Yong-Mei; Wang, Yun-Qiang; Xing, Xiao-Ke; Zhang, Da-Wei; Liang, Han-Qiao; Guo, Shun-Xing

    2013-01-01

    Dendrobium spp. are traditional Chinese medicinal plants, and the main effective ingredients (polysaccharides and alkaloids) have pharmacologic effects on gastritis infection, cancer, and anti-aging. Previously, we confirmed endophytic xylariaceous fungi as the dominant fungi in several Dendrobium species of tropical regions from China. In the present study, the diversity, taxonomy, and distribution of culturable endophytic xylariaceous fungi associated with seven medicinal species of Dendrobium (Orchidaceae) were investigated. Among the 961 endophytes newly isolated, 217 xylariaceous fungi (morphotaxa) were identified using morphological and molecular methods. The phylogenetic tree constructed using nuclear ribosomal internal transcribed spacer (ITS), large subunit of ribosomal DNA (LSU), and beta-tubulin sequences divided these anamorphic xylariaceous isolates into at least 18 operational taxonomic units (OTUs). The diversity of the endophytic xylariaceous fungi in these seven Dendrobium species was estimated using Shannon and evenness indices, with the results indicating that the dominant Xylariaceae taxa in each Dendrobium species were greatly different, though common xylariaceous fungi were found in several Dendrobium species. These findings implied that different host plants in the same habitats exhibit a preference and selectivity for their fungal partners. Using culture-dependent approaches, these xylariaceous isolates may be important sources for the future screening of new natural products and drug discovery.

  9. Phytopatological monitoring of Inonotus rickii and GPS-GIS applications, Rome, Italy

    Directory of Open Access Journals (Sweden)

    Moriondo M

    2008-06-01

    Full Text Available Plant disease management may be improved by collecting, storing, manipulating, analysing and displaying epidemiological information using a Geographic Information System (GIS, a useful tool to evaluate plant disease problems in a spatial context. In this study, GIS analysis was applied along with global positioning systems (GPS to integrate field data-collected with the spatial distribution of the pathogen Inonotus rickii. This pathogen provokes a decay of sapwood/heartwood and cankers, determining a progressive crown dieback and structural weakness of the trees, therefore increasing risk of branch breaks and tree failures. It is widespread in tropical and subtropical countries and it has already been recorded in many areas in Rome on Acer negundo, Albizia julibrissin, Koelreuteria paniculata, Celtis australis and Platanus x acerifolia. A survey was carried out in different boulevards of A. negundo and A. julibrissin with the aim of evaluating disease symptoms such as sparse foliage, dead twigs and branches, wood decay and presence of fungal structures. In this survey, I. rickii was recorded also on Robinia pseudoacacia, which is a new host. The study allowed to obtain thematic maps showing the spatial distribution of all infected trees, as well as the presence of anamorph and/or teleomorph structures of the fungus. Moreover, a map representing the incidence of the pathogen in different boulevards was obtained. The usefulness of GIS analysis in studies aimed to support and refine management strategies for disease control in urban trees is discussed.

  10. Microscopic fungi on Nymphaeaceae plants of the Lake Płociczno in Drawa National Park (NW Poland

    Directory of Open Access Journals (Sweden)

    Kinga Mazurkiewicz-Zapałowicz

    2016-07-01

    Full Text Available The aim of this study was to determine the occurrence of micromycetes associated with disease symptoms on the leaves and flowers of three plant species, Nymphaea alba (NA, Nymphaea candida (NC, and Nuphar lutea (NL, forming nympheid phytocoenoses on Lake Płociczno in Drawa National Park during the years 2009 to 2012. From all collected plant specimens, an overall number of 38 distinct taxa of fungi and chromistan fungal analogues was isolated. The largest diversity of taxa was found on NL (37 taxa, the lowest was on NC (4 taxa, and NA contained 12 taxa. Each year, anamorphic forms of Ascomycota were dominant in the taxonomic structure. For the first time in Poland, Septoria nupharis (NA, NL, NC and Colletotrichum nymphaeae (NL, NC were found on their spotted leaves. For both of the mentioned pathogens, Nymphaea candida is a new host plant in Poland. Botrytis cinerea, Elongisporangium undulatum (= Pythium undulatum, Epicoccum nigrum, Fusarium incarnatum (= F. semitectum, and Gibberella avenacea (= Fusarium avenaceum were found each year in the studied phytocoenoses. The confirmation of NA and NL flower infections by Botrytis cinerea, which leads to gangrene, is an important aspect of the gray mold epidemiology. Until now, the occurrence of smut fungi on nympheids in Drawa National Park was not observed. The taxonomic structure and the predomination of asexual stages of fungi, as well as the similarity coefficients, suggest that the seasonal decomposition of nympheids run naturally and contribute to maintaining the stability of the lake ecosystem.

  11. Wavefront aberrations of x-ray dynamical diffraction beams.

    Science.gov (United States)

    Liao, Keliang; Hong, Youli; Sheng, Weifan

    2014-10-01

    The effects of dynamical diffraction in x-ray diffractive optics with large numerical aperture render the wavefront aberrations difficult to describe using the aberration polynomials, yet knowledge of them plays an important role in a vast variety of scientific problems ranging from optical testing to adaptive optics. Although the diffraction theory of optical aberrations was established decades ago, its application in the area of x-ray dynamical diffraction theory (DDT) is still lacking. Here, we conduct a theoretical study on the aberration properties of x-ray dynamical diffraction beams. By treating the modulus of the complex envelope as the amplitude weight function in the orthogonalization procedure, we generalize the nonrecursive matrix method for the determination of orthonormal aberration polynomials, wherein Zernike DDT and Legendre DDT polynomials are proposed. As an example, we investigate the aberration evolution inside a tilted multilayer Laue lens. The corresponding Legendre DDT polynomials are obtained numerically, which represent balanced aberrations yielding minimum variance of the classical aberrations of an anamorphic optical system. The balancing of classical aberrations and their standard deviations are discussed. We also present the Strehl ratio of the primary and secondary balanced aberrations.

  12. Microsporum gypseum complex in man and animals.

    Science.gov (United States)

    Demange, C; Contet-Audonneau, N; Kombila, M; Miegeville, M; Berthonneau, M; De Vroey, C; Percebois, G

    1992-01-01

    Twenty-eight strains of the Microsporum gypseum complex isolated from humans and animals were studied. The perfect form was found for 25 of the isolates. Nannizzia incurvata was the species most frequently involved in human pathology, while Nannizzia gypsea was most frequently found on animal lesions. Nannizzia fulva was rarely involved pathologically and Nannizzia corniculata was not isolated during this study. It is surprising to note that this species was not found even though most of our strains (22/28) came from Africa. Reliable methods are not available for differentiating among the anamorphs, which are commonly called M. gypseum, Microsporum fulvum or Microsporum boullardii. The Sabouraud medium conventionally used for medical mycology makes almost no distinction among them. We found that the species could be easily distinguished by colonial and microscopic features when grown on Takashio medium. When strains are atypical, sexual reproduction remains the reference technique but, in most cases, Takashio medium makes it possible to avoid this long drawn-out procedure.

  13. PTK1, a mitogen-activated-protein kinase gene, is required for conidiation, appressorium formation, and pathogenicity of Pyrenophora teres on barley.

    Science.gov (United States)

    Ruiz-Roldán, M C; Maier, F J; Schäfer, W

    2001-02-01

    Mitogen-activated protein kinases (MAPKs) are a group of protein kinases that execute a wide variety of roles in cellular signal transduction pathways such as osmoregulation, cell wall biosynthesis, growth, and differentiation. A polymerase chain reaction (PCR) with degenerate primers based on conserved regions of known MAPKs was used to clone the MAPK gene PTK1 from the leaf pathogen Pyrenophora teres (anamorph Drechslera teres), the causal agent of net blotch of barley (Hordeum vulgare L.). The predicted amino acid sequence shows high homology with MAPKs from other phytopathogenic fungi. The gene is present in the genome as a single copy. PTK1 is expressed during in vitro growth on complete medium, under conidiation-inducing conditions and during infection of barley leaves, as shown by reverse transcription-PCR studies. In order to assess the role of PTK1 in the life cycle of P. teres, targeted gene disruption was conducted. Mutants carrying an interrupted copy of the gene were deficient in conidiation, did not form appressoria on glass surfaces or on barley leaves, lost their ability to infect barley leaves, and could not colonize host tissues following artificial wounding.

  14. Conservation of XYN11A and XYN11B xylanase genes in Bipolaris sorghicola, Cochliobolus sativus, Cochliobolus heterostrophus, and Cochliobolus spicifer.

    Science.gov (United States)

    Emami, Kaveh; Hack, Ethan

    2002-10-01

    Two types of xylanase gene, XYN11A ( XYL1) and XYN11B ( XYL2), were amplified by PCR and partially sequenced in four phytopathogenic species of the ascomycete fungal genus Cochliobolus (anamorph genus Bipolaris). Three of the species, C. heterostrophus ( B. maydis), C. sativus ( B. sorokiniana), and Bipolaris sorghicola (no teleomorph known), are interrelated; the fourth, C. spicifer ( B. spicifera), was found, through analysis of the 5.8S RNA and internal transcribed spacer (ITS) sequences of its ribosomal DNA, to be more distantly related to the other three. Isolates from all four species contain orthologous XYN11A and XYN11B genes, but a set of laboratory strains of C. heterostrophus gave no product corresponding to the XYN11B gene. The patterns of evolution of the two xylanase genes and ribosomal DNA sequences are mutually consistent; the results indicate that the two genes were present in the common ancestor of all Cochliobolus species and are evolving independently of each other.

  15. Brachypodium distachyon-Cochliobolus sativus Pathosystem is a New Model for Studying Plant-Fungal Interactions in Cereal Crops.

    Science.gov (United States)

    Zhong, Shaobin; Ali, Shaukat; Leng, Yueqiang; Wang, Rui; Garvin, David F

    2015-04-01

    Cochliobolus sativus (anamorph: Bipolaris sorokiniana) causes spot blotch, common root rot, and kernel blight or black point in barley and wheat. However, little is known about the molecular mechanisms underlying the pathogenicity of C. sativus or the molecular basis of resistance and susceptibility in the hosts. This study aims to establish the model grass Brachypodium distachyon as a new model for studying plant-fungus interactions in cereal crops. Six B. distachyon lines were inoculated with five C. sativus isolates. The results indicated that all six B. distachyon lines were infected by the C. sativus isolates, with their levels of resistance varying depending on the fungal isolates used. Responses ranging from hypersensitive response-mediated resistance to complete susceptibility were observed in a large collection of B. distachyon (2n=2x=10) and B. hybridum (2n=4x=30) accessions inoculated with four of the C. sativus isolates. Evaluation of an F2 population derived from the cross between two of the B. distachyon lines, Bd1-1 and Bd3-1, with isolate Cs07-47-1 showed quantitative and transgressive segregation for resistance to C. sativus, suggesting that the resistance may be governed by quantitative trait loci from both parents. The availability of whole-genome sequences of both the host (B. distachyon) and the pathogen (C. sativus) makes this pathosystem an attractive model for studying this important disease of cereal crops.

  16. RELATIONSHIP BETWEEN PATHOGENICITY AND FUNGICIDE TOLERANCE IN THE WHEAT PATHOGEN MYCOSPHAERELLA GRAMINICOLA.

    Science.gov (United States)

    Siah, A; Deweer, C; Tisserant, B; Randoux, B; Halama, P; Reignault, Ph

    2015-01-01

    Septoria tritici blotch caused by Mycosphaerella graminicola (anamorph: Zymoseptoria tritici) is currently the most devastating disease on wheat crops worldwide, especially in regions with suitable climate conditions such as Western Europe. Pathogen control relies mainly on the use of fungicides and resistant cultivars. However, the durability of chemical and genetic control strategies is increasingly compromised in the field since the fungus frequently develops resistance to fungicides and overcomes host resistance. Here, we assessed the association between pathogenicity and fungicide tolerance in eighteen different M. graminicola strains isolated in 2009 from Northern France. These strains were chosen because they exhibited in preliminary experiments a wide range of in vitro tolerance levels against six demethylation inhibitors (epoxiconazole, cyproconazole, fluquinconazole, propiconazole, prothioconazole and pyrefenox). Inoculation of the Scorpion susceptible wheat cultivar in the greenhouse with these strains revealed a great variability in their pathogenicity levels (disease symptoms ranged from 0 to 66% of leaf area bearing pycnidia). Interestingly, strains with high fungicide tolerance levels caused overall the highest disease symptoms (45% of diseased leaf area on average) when compared to those with low fungicide tolerance levels (22% of diseased leaf area on average), thus confirming the association between pathogenicity level and fungicide tolerance in M. graminicola. The occurrence and selection in the field of fungal genotypes combining both pathogenicity and fungicide resistance should be taken into account in disease management strategies.

  17. Novel compact panomorph lens based vision system for monitoring around a vehicle

    Science.gov (United States)

    Thibault, Simon

    2008-04-01

    Automotive applications are one of the largest vision-sensor market segments and one of the fastest growing ones. The trend to use increasingly more sensors in cars is driven both by legislation and consumer demands for higher safety and better driving experiences. Awareness of what directly surrounds a vehicle affects safe driving and manoeuvring of a vehicle. Consequently, panoramic 360° Field of View imaging can contributes most to the perception of the world around the driver than any other sensors. However, to obtain a complete vision around the car, several sensor systems are necessary. To solve this issue, a customized imaging system based on a panomorph lens will provide the maximum information for the drivers with a reduced number of sensors. A panomorph lens is a hemispheric wide angle anamorphic lens with enhanced resolution in predefined zone of interest. Because panomorph lenses are optimized to a custom angle-to-pixel relationship, vision systems provide ideal image coverage that reduces and optimizes the processing. We present various scenarios which may benefit from the use of a custom panoramic sensor. We also discuss the technical requirements of such vision system. Finally we demonstrate how the panomorph based visual sensor is probably one of the most promising ways to fuse many sensors in one. For example, a single panoramic sensor on the front of a vehicle could provide all necessary information for assistance in crash avoidance, lane tracking, early warning, park aids, road sign detection, and various video monitoring views.

  18. Phylogenomic and functional domain analysis of polyketide synthases in Fusarium

    Energy Technology Data Exchange (ETDEWEB)

    Brown, Daren W.; Butchko, Robert A.; Baker, Scott E.; Proctor, Robert H.

    2012-02-01

    Fusarium species are ubiquitous in nature, cause a range of plant diseases, and produce a variety of chemicals often referred to as secondary metabolites. Although some fungal secondary metabolites affect plant growth or protect plants from other fungi and bacteria, their presence in grain based food and feed is more often associated with a variety of diseases in plants and in animals. Many of these structurally diverse metabolites are derived from a family of related enzymes called polyketide synthases (PKSs). A search of genomic sequence of Fusarium verticillioides, F. graminearum, F. oxysporum and Nectria haematococca (anamorph F. solani) identified a total of 58 PKS genes. To gain insight into how this gene family evolved and to guide future studies, we conducted a phylogenomic and functional domain analysis. The resulting genealogy suggested that Fusarium PKSs represent 34 different groups responsible for synthesis of different core metabolites. The analyses indicate that variation in the Fusarium PKS gene family is due to gene duplication and loss events as well as enzyme gain-of-function due to the acquisition of new domains or of loss-of-function due to nucleotide mutations. Transcriptional analysis indicate that the 16 F. verticillioides PKS genes are expressed under a range of conditions, further evidence that they are functional genes that confer the ability to produce secondary metabolites.

  19. 古尼虫草组织学研究%The Histology of Cordyceps gunnii

    Institute of Scientific and Technical Information of China (English)

    孟祥贤; 张志光; 陈作红

    2001-01-01

    Different developmental stages of Cordyceps gunnii was studied with light microscopy and scanning electron microscopy techniques. The top of ascus of Cordyceps gunnii  had a thick cap structure.Mycelia on the surface of ascoma was dense and thin, while on the tranma was sparse and thick forming a number of big cavities.The top of conidiophore of the anamorph of Cordyceps gunnii  swelled to construct conidium. Since the length of conidiophore kept the same size, so the conidium was holoblastic.%用光学显微镜、扫描电子显微镜对不同成熟度的古尼虫草进行了组织学观察,结果表明:古尼虫草子囊顶部有增厚的帽状结构,包裹子囊壳的菌丝致密而纤细,子座菌髓管状菌丝粗壮而疏松,形成很多的中空结构;古尼拟青霉分生孢子梗顶端膨大,形成分生孢子,分生孢子属外生芽殖型.

  20. New species of Mycosphaerella from Myrtaceae in plantations and native forests in eastern Australia.

    Science.gov (United States)

    Carnegie, Angus J; Burgess, Treena I; Beilharz, Vyrna; Wingfield, Michael J

    2007-01-01

    The majority of Mycosphaerella species from eucalypts (Eucalyptus, Corymbia and Angophora) in Australia have been recorded only from trees growing in plantations. This illustrates a bias in research in the past two decades toward commercial enterprise, and it emphasises a lack of understanding of the occurrence of these important fungi under natural conditions. Surveys of foliar fungi in native forests in eastern Australia, as well as adjacent plantations, thus have been initiated in recent years. In this study we describe four new species of Mycosphaerella from Eucalyptus spp. as well as other Myrtaceae. Mycosphaerella tumulosa sp. nov. (anamorph: Pseudocercospora sp.) was found on more than seven species of Eucalyptus and Corymbia in native forests and plantations in northeastern New South Wales and southeastern Queensland and appears to be relatively common, although not damaging to these trees. Mycosphaerella multiseptata sp. nov. was recorded from several locations on species of Angophora in native forests and amenity plantings. Mycosphaerella pseudovespa sp. nov. was found in one location in native forest on E. biturbinata. The first species of Mycosphaerella to be described from Syncarpia, M. syncarpiae sp. nov., was found in native forests in numerous locations from Sydney through to northeastern New South Wales and appears to be relatively common.

  1. Large area silicon sheet by EFG. Annual progress report, October 1, 1977-September 30, 1978

    Energy Technology Data Exchange (ETDEWEB)

    Wald, F.V.

    1979-02-16

    Progress in EFG ribbon growth was made in a number of areas as follows: (1) Multiple growth for ribbons 5 cm in width was demonstrated in two runs of 12 and 20 hours' duration. (2) A new single cartridge crystal growth station, designated Machine 17, was built. It has vastly expanded observational capacity by virture of an anamorphic optical-video system which allows close observation of the meniscus over 7.5 cm in width, as well as video taping of the ribbon growth process for further analysis. Also, a number of mechanical advances were incorporated into this equipment. (3) Growth Station No. 1 achieved reproducible and reliable growth of 7.5 cm wide ribbon at speeds up to 4 cm/min. (4) A major advance in cartridge design, the mini cold shoe, was introduced. (5) Interface shaping using the displaced die concept led to significant increases in cell efficiency. Large area cells (2.5 by 7.5 cm/sup 2/, 2.5 x 10 cm/sup 2/, and 7.5 by 7.5 cm/sup 2/), which achieve efficiencies over 9%, have been made in significant numbers. (6) The role of gaseous impurities in cartridge furnaces has been clarified and their destabilizing influence on growth has been brought under control. Details of most of these developments are discussed.

  2. Exposition of dermatophyte Trichophyton mentagrophytes to L-cystine induces expression and activation of cysteine dioxygenase.

    Science.gov (United States)

    Kasperova, Alena; Cahlikova, Romana; Kunert, Jiri; Sebela, Marek; Novak, Zdenek; Raska, Milan

    2014-11-01

    Cysteine dioxygenase (CDO) is involved in regulation of intracellular cysteine levels by catabolising the cysteine to sulphite and sulphate. In keratinolytic fungi, sulphite is actively excreted to reduce disulphide bridges in keratin before its enzymatic degradation. The pathogenicity role of CDO was confirmed in cysteine-hypersensitive and growth-defective ΔCdo mutant of Arthroderma benhamiae on hair and nails. We analysed the CDO expression regulation in T. mentagrophytes (anamorph of A. benhamiae) mycelia by determining the Cdo mRNA and CDO protein levels and by analysing the proportion of two molecular forms of CDO in response to l-cystine exposure. Cdo mRNA levels in mycelia lysates were detected by reverse-transcription real-time polymerase chain reaction and CDO protein by western blot using mouse CDO-specific hyperimmune serum. The Cdo mRNA level increased gradually 2.5-4.5 h after exposure of the mycelium to l-cystine. The CDO protein, detected as two bands of different mobility, appeared earlier in comparison to mRNA (1 h) and culminated after 24 h. More mobile form prevailed after 4.5 h. The comparison of the dynamics in the Cdo mRNA and CDO protein levels indicates that T. mentagrophytes responds to l-cystine by increased transcription and apparently decreased degradation of the CDO and by changing towards higher mobility molecular form, similar to previous reports describing mammalian analogue.

  3. Genetic and metabolic biodiversity of Trichoderma from Colombia and adjacent neotropic regions.

    Science.gov (United States)

    Hoyos-Carvajal, Lilliana; Orduz, Sergio; Bissett, John

    2009-09-01

    The genus Trichoderma has been studied for production of enzymes and other metabolites, as well as for exploitation as effective biological control agents. The biodiversity of Trichoderma has seen relatively limited study over much of the neotropical region. In the current study we assess the biodiversity of 183 isolates from Mexico, Guatemala, Panama, Ecuador, Peru, Brazil and Colombia, using morphological, metabolic and genetic approaches. A comparatively high diversity of species was found, comprising 29 taxa: Trichoderma asperellum (60 isolates), Trichoderma atroviride (3), Trichoderma brevicompactum (5), Trichoderma crassum (3), Trichoderma erinaceum (3), Trichoderma gamsii (2), Trichoderma hamatum (2), Trichoderma harzianum (49), Trichoderma koningiopsis (6), Trichoderma longibrachiatum (3), Trichoderma ovalisporum (1), Trichoderma pubescens (2), Trichoderma rossicum (4), Trichoderma spirale (1), Trichoderma tomentosum (3), Trichoderma virens (8), Trichoderma viridescens (7) and Hypocrea jecorina (3) (anamorph: Trichoderma reesei), along with 11 currently undescribed species. T. asperellum was the prevalent species and was represented by two distinct genotypes with different metabolic profiles and habitat preferences. The second predominant species, T. harzianum, was represented by three distinct genotypes. The addition of 11 currently undescribed species is evidence of the considerable unresolved biodiversity of Trichoderma in neotropical regions. Sequencing of the internal transcribed spacer regions (ITS) of the ribosomal repeat could not differentiate some species, and taken alone gave several misidentifications in part due to the presence of nonorthologous copies of the ITS in some isolates.

  4. Development of Ophiocordyceps sinensis through Plant-Mediated Interkingdom Host Colonization.

    Science.gov (United States)

    Lei, Wei; Zhang, Guren; Peng, Qingyun; Liu, Xin

    2015-07-30

    Ophiocordyceps sinensis is a well-known entomogenous and medicinal fungus. After its anamorphs parasitize the larvae of the genus Thitarodes, fruit-bodies may form to be used as medicine. However, its developmental mechanisms remain unknown. The distribution of O. sinensis was determined in different tissues of the Thitarodes larvae and the dominant plant species using real-time quantitative polymerase chain reaction (qPCR) and fluorescence in situ hybridization (FISH) technique, respectively. We found that more fungal material was located in plants than in larvae, especially in Ranunculus tanguticus. A considerable amount was detected in larval intestinal-wall and plant roots. It is suggested that plants are the potential hosts of O. sinensis, which modifies our understanding of the life cycle of O. sinensis and indicates that the phytophagous larvae may become infected as they feed. Our research may contribute to the study of systematic evolution and population ecology of O. sinensis, elucidate its developmental mechanism and promote sustainable harvesting.

  5. Screening of thermotolerant and thermophilic fungi aiming β-xylosidase and arabinanase production

    Directory of Open Access Journals (Sweden)

    Vivian Machado Benassi

    2014-12-01

    Full Text Available Plant cell wall is mainly composed by cellulose, hemicellulose and lignin. The heterogeneous structure and composition of the hemicellulose are key impediments to its depolymerization and subsequent use in fermentation processes. Thus, this study aimed to perform a screening of thermophilic and thermotolerant filamentous fungi collected from different regions of the São Paulo state, and analyze the production of β-xylosidase and arabinanase at different temperatures. These enzymes are important to cell wall degradation and synthesis of end products as xylose and arabinose, respectively, which are significant sugars to fermentation and ethanol production. A total of 12 fungal species were analyzed and 9 of them grew at 45 ºC, suggesting a thermophilic or thermotolerant character. Additionally Aspergillus thermomutatus anamorph of Neosartorya and A. parasiticus grew at 50 ºC. Aspergillus niger and Aspergillus thermomutatus were the filamentous fungi with the most expressive production of β-xylosidase and arabinanase, respectively. In general for most of the tested microorganisms, β-xylosidase and arabinanase activities from mycelial extract (intracellular form were higher in cultures grown at high temperatures (35-40 ºC, while the correspondent extracellular activities were favorably secreted from cultures at 30 ºC. This study contributes to catalogue isolated fungi of the state of São Paulo, and these findings could be promising sources for thermophilic and thermotolerant microorganisms, which are industrially important due to their enzymes.

  6. A new species of Harpophora (Magnaporthaceae) recovered from healthy wild rice (Oryza granulata) roots, representing a novel member of a beneficial dark septate endophyte.

    Science.gov (United States)

    Yuan, Zhi-Lin; Lin, Fu-Cheng; Zhang, Chu-Long; Kubicek, Christian P

    2010-06-01

    A survey of the endophytic fungal community of wild rice (Oryza granulata) in China was conducted. Two isolates recovered from healthy roots are assumed to be dark septate endophytes (DSEs). They are morphologically similar to species from the genus Harpophora and are identified as a new species, Harpophora oryzae, based on the molecular phylogeny and morphological characteristics. A neighbor-joining tree constructed from ITS-5.8S rRNA gene regions reveals that H. oryzae forms a distinctive subclade within the genus Harpophora, and is not genetically close to other species of Harpophora. Harpophora oryzae exhibits a moderate growth rate, with a frequent production of rope-like strands. It sporulates readily on artificial medium. Phialides are usually flask or bottle shaped and occur singly along hyphae or laterally and terminally on branched, hyaline to brown conidiophores, and also form whorls on metulae. Conidiophores are mostly branched with a slightly thickened wall, varying in dimensions. Conidia are one-celled and hyaline, most of them being falcate and strongly curved. The morphological differences between Harpophora spp. and Harpophora-like anamorphs representing different orders are also discussed. An in vitro inoculation test showed that H. oryzae may contribute towards improving rice (Oryza sativa L.) growth. Microscopic inspection of roots and phylogenetic placement of isolates further confirmed that H. oryzae represents a novel member of DSEs.

  7. Phylogeny of Phaeomollisia piceae gen. sp. nov.: a dark, septate, conifer-needle endophyte and its relationships to Phialocephala and Acephala.

    Science.gov (United States)

    Grünig, Christoph R; Queloz, Valentin; Duò, Angelo; Sieber, Thomas N

    2009-02-01

    Dark, septate endophytes (DSE) were isolated from roots and needles of dwarf Picea abies and from roots of Vaccinium spp. growing on a permafrost site in the Jura Mountains in Switzerland. Two of the isolates sporulated after incubation for more than one year at 4 degrees C. One of them was a hitherto undescribed helotialean ascomycete Phaeomollisia piceae gen. sp. nov., the other was a new species of Phialocephala, P. glacialis sp. nov. Both species are closely related to DSE of the Phialocephala fortinii s. lat.-Acephala applanata species complex (PAC) as revealed by phylogenetic analyses of the ITS and 18S rDNA regions. Morphologically dissimilar fungi, such as Vibrissea and Loramyces species, are phylogenetically also closely linked to the new species and the PAC. Cadophora lagerbergii and C. (Phialophora) botulispora are moved to Phialocephala because Phialocephala dimorphospora and P. repens are the closest relatives. Several Mollisia species were closely related to the new species and the PAC according to ITS sequence comparisons. One DSE from needles of Abies alba and one from shoots of Castanea sativa formed Cystodendron anamorphs in culture. Their identical 18S sequences and almost identical ITS sequences indicated Mollisia species as closest relatives, suggesting that Mollisia species are highly euryoecious.

  8. Nitrogen form influences the response of Deschampsia antarctica to dark septate root endophytes.

    Science.gov (United States)

    Upson, Rebecca; Read, David J; Newsham, Kevin K

    2009-11-01

    Fungi with dematiaceous septate hyphae, termed dark septate endophytes (DSE), are common in plant roots, particularly in cold-stressed habitats, but their effects on their host plants remain obscure. Here, we report a study that assessed the effects of six DSE on the growth and nutrient balance of Deschampsia antarctica when plants were supplied with the same amount of nitrogen in organic (casein hydrolysate) or inorganic (ammonium sulphate) form under controlled conditions. After 60 days, the DSE, that had each been isolated from D. antarctica and which analyses of internal transcribed spacer and large subunit regions indicated were similar to members of the Helotiales (Oculimacula yallundae, Mollisia and Tapesia spp.) and unassigned anamorphic ascomycetes, typically had no effect on, or reduced by 33-71%, shoot and root dry weights relative to uninoculated controls when plants had been supplied with nitrogen in inorganic form. In contrast, the DSE usually enhanced shoot and root dry weights by 51-247% when plants had been supplied with organic nitrogen. In the presence of inorganic nitrogen, only sporadic effects of DSE were recorded on shoot and root nitrogen or phosphorus concentrations, whereas in the presence of organic nitrogen, three to six of the DSE isolates increased shoot and root nitrogen and phosphorus contents. Most of the isolates decreased the phosphorus concentrations of shoots and roots when plants had been supplied with nitrogen in organic form. Our data suggest that DSE are able to mineralise peptides and amino acids in the rhizosphere, making nitrogen more freely available to roots.

  9. Snake fungal disease: an emerging threat to wild snakes.

    Science.gov (United States)

    Lorch, Jeffrey M; Knowles, Susan; Lankton, Julia S; Michell, Kathy; Edwards, Jaime L; Kapfer, Joshua M; Staffen, Richard A; Wild, Erik R; Schmidt, Katie Z; Ballmann, Anne E; Blodgett, Doug; Farrell, Terence M; Glorioso, Brad M; Last, Lisa A; Price, Steven J; Schuler, Krysten L; Smith, Christopher E; Wellehan, James F X; Blehert, David S

    2016-12-05

    Since 2006, there has been a marked increase in the number of reports of severe and often fatal fungal skin infections in wild snakes in the eastern USA. The emerging condition, referred to as snake fungal disease (SFD), was initially documented in rattlesnakes, where the infections were believed to pose a risk to the viability of affected populations. The disease is caused by Ophidiomyces ophiodiicola, a fungus recently split from a complex of fungi long referred to as the Chrysosporium anamorph of Nannizziopsis vriesii (CANV). Here we review the current state of knowledge about O. ophiodiicola and SFD. In addition, we provide original findings which demonstrate that O. ophiodiicola is widely distributed in eastern North America, has a broad host range, is the predominant cause of fungal skin infections in wild snakes and often causes mild infections in snakes emerging from hibernation. This new information, together with what is already available in the scientific literature, advances our knowledge of the cause, pathogenesis and ecology of SFD. However, additional research is necessary to elucidate the factors driving the emergence of this disease and develop strategies to mitigate its impacts.This article is part of the themed issue 'Tackling emerging fungal threats to animal health, food security and ecosystem resilience'.

  10. Snake fungal disease: An emerging threat to wild snakes

    Science.gov (United States)

    Lorch, Jeffrey M.; Knowles, Susan N.; Lankton, Julia S.; Michell, Kathy; Edwards, Jaime L.; Kapfer, Joshua M.; Staffen, Richard A.; Wild, Erik R.; Schmidt, Katie Z.; Ballmann, Anne; Blodgett, Doug; Farrell, Terence M.; Glorioso, Brad M.; Last, Lisa A.; Price, Steven J.; Schuler, Krysten L.; Smith, Christopher E.; Wellehan, James F. X.; Blehert, David S.

    2016-01-01

    Since 2006, there has been a marked increase in the number of reports of severe and often fatal fungal skin infections in wild snakes in the eastern USA. The emerging condition, referred to as snake fungal disease (SFD), was initially documented in rattlesnakes, where the infections were believed to pose a risk to the viability of affected populations. The disease is caused byOphidiomyces ophiodiicola, a fungus recently split from a complex of fungi long referred to as the Chrysosporium anamorph of Nannizziopsis vriesii (CANV). Here we review the current state of knowledge about O. ophiodiicola and SFD. In addition, we provide original findings which demonstrate that O. ophiodiicola is widely distributed in eastern North America, has a broad host range, is the predominant cause of fungal skin infections in wild snakes and often causes mild infections in snakes emerging from hibernation. This new information, together with what is already available in the scientific literature, advances our knowledge of the cause, pathogenesis and ecology of SFD. However, additional research is necessary to elucidate the factors driving the emergence of this disease and develop strategies to mitigate its impacts.

  11. The influence of some factors on β-1,4-xylanase activity of the filamentous fungus Trichoderma reesei QM9414

    Directory of Open Access Journals (Sweden)

    Alexandru Manoliu

    2012-03-01

    Full Text Available The mesophyllic fungus Trichoderma reesei (anamorph to Hypocrea jecorina is an important biotechnological tool, known for its ability to secrete large quantities of hydrolytic enzymes. Renewable biomass, such as agricultural and forest wastes are used to produce microbial enzymes in various industrial processes such as food, feed and bioethanol industries. In raw biomass materials, such as wheat straws, barley straws and maize stalks, the main polysaccharide is cellulose which is closely associated with hemicelluloses like xylan, manan and xyloguclan. In consequence, the hydrolysis of these materials requires the concerted action of several enzymes, namely cellulases and xylanases. Endo-xylanase (endo-1,4--xylanase, EC 3.2.1.8 is the key enzyme involved in xylan hydrolysis, the mainhemicellulosic component of plant cell walls. The metabolic activity and enzyme productivity of Trichoderma reesei isinfluenced by various environmental conditions. In this context, we analysed the effect of pH, cultivation period, thenature of the substrate used and the nitrogen source on enzymatic activity. The maximum xylanase yield was recorded at a initial pH of 4 (116.189 IU/ml for barley and 5 for wheat (88.578 IU/ml, respectively maize (116.583 IU/ml. The bestsubstrate for endo-xylanase activity was maize stalks (90.446 IU/ml at a a concentration of 30g/L.

  12. Widespread mycorrhizal specificity correlates to mycorrhizal function in the neotropical, epiphytic orchid Ionopsis utricularioides (Orchidaceae).

    Science.gov (United States)

    Otero, J Tupac; Flanagan, Nicola S; Herre, E Allen; Ackerman, James D; Bayman, Paul

    2007-12-01

    Tropical orchids constitute the greater part of orchid diversity, but little is known about their obligate mycorrhizal relationships. The specificity of these interactions and associated fungal distributions could influence orchid distributions and diversity. We investigated the mycorrhizal specificity of the tropical epiphytic orchid Ionopsis utricularioides across an extensive geographical range. DNA ITS sequence variation was surveyed in both plants and mycorrhizal fungi. Phylogeographic relationships were estimated for the mycorrhizal fungi. Orchid functional outcomes were determined through in vitro seed germination and seedling growth with a broad phylogenetic representation of fungi. Most fungal isolates derived from one clade of Ceratobasidium (anamorphs assignable to Ceratorhiza), with 78% within a narrower phylogenetic group, clade B. No correlation was found between the distributions of orchid and fungal genotypes. All fungal isolates significantly enhanced seed germination, while fungi in clade B significantly enhanced seedling growth. These results show that I. utricularioides associates with a phylogenetically narrow, effective fungal clade over a broad distribution. This preference for a widespread mycorrhizae may partly explain the ample distribution and abundance of I. utricularioides and contrasts with local mycorrhizal diversification seen in some nonphotosynthetic orchids. Enhanced orchid function with a particular fungal subclade suggests mycorrhizal specificity can increase orchid fitness.

  13. Cutaneous Phaeohyphomycosis Caused by Exophiala attenuata in a Domestic Cat.

    Science.gov (United States)

    Overy, David P; Martin, Chelsea; Muckle, Anne; Lund, Lorraine; Wood, Jill; Hanna, Paul

    2015-10-01

    A 7-year-old female-spayed, domestic short-haired cat was presented to her veterinarian with a mass on the hind paw. Histopathologic examination of a tissue biopsy revealed nodular pyogranulomatous panniculitis with intralesional pigmented fungal hyphae. A dematiaceous fungal isolate was isolated with a micromorphological phenotype consistent with the anamorphic genus Exophiala: budding cells, torulose mycelium and annellidic conidiogenesis from simple conidiophores consisting of terminal and lateral cells that tapered to a short beak at the apex. Sequence homology of the internal transcribed spacer region of the rDNA gene confirmed the identification of the isolate as Exophiala attenuata. Reported here is the first confirmed case of feline phaeohyphomycosis caused by E. attenuata in North America. Similar to historical cases of feline phaeohyphomycosis caused by Exophiala spp., there was no history or postmortem evidence to suggest the patient was in an immunocompromised state (e.g., suffering from FeLV or FIV). Although aggressive surgical excision of local lesions is recommended prior to drug treatment when dealing with subcutaneous phaeohyphomycosis, surgery followed by itraconazole treatment did not resolve the E. attenuata infection in this cat.

  14. Diversity and taxonomy of endophytic xylariaceous fungi from medicinal plants of Dendrobium (Orchidaceae.

    Directory of Open Access Journals (Sweden)

    Juan Chen

    Full Text Available Dendrobium spp. are traditional Chinese medicinal plants, and the main effective ingredients (polysaccharides and alkaloids have pharmacologic effects on gastritis infection, cancer, and anti-aging. Previously, we confirmed endophytic xylariaceous fungi as the dominant fungi in several Dendrobium species of tropical regions from China. In the present study, the diversity, taxonomy, and distribution of culturable endophytic xylariaceous fungi associated with seven medicinal species of Dendrobium (Orchidaceae were investigated. Among the 961 endophytes newly isolated, 217 xylariaceous fungi (morphotaxa were identified using morphological and molecular methods. The phylogenetic tree constructed using nuclear ribosomal internal transcribed spacer (ITS, large subunit of ribosomal DNA (LSU, and beta-tubulin sequences divided these anamorphic xylariaceous isolates into at least 18 operational taxonomic units (OTUs. The diversity of the endophytic xylariaceous fungi in these seven Dendrobium species was estimated using Shannon and evenness indices, with the results indicating that the dominant Xylariaceae taxa in each Dendrobium species were greatly different, though common xylariaceous fungi were found in several Dendrobium species. These findings implied that different host plants in the same habitats exhibit a preference and selectivity for their fungal partners. Using culture-dependent approaches, these xylariaceous isolates may be important sources for the future screening of new natural products and drug discovery.

  15. Trichothecene genotypes of Fusarium graminearum from wheat in Uruguay.

    Science.gov (United States)

    Pan, Dinorah; Calero, Natalia; Mionetto, Ana; Bettucci, Lina

    2013-03-01

    Gibberella zeae (Schwein.) Petch (anamorph F. graminearum Schwabe) is the primary causal agent of FHB of wheat in Uruguay. In the last decade, F. graminearum has produced destructive epidemics on wheat in Uruguay, causing yield losses and price discounts due to reduced seed quality. Strains of F. graminearum clade usually express one of three strain-specific profiles of trichothecene metabolites: nivalenol and its acetylated derivatives (NIV chemotype), deoxynivalenol and 3-acetyldeoxynivalenol (3-AcDON chemotype), or deoxynivalenol and 15-acetyldeoxynivalenol (15-AcDON chemotype). A multiplex PCR assay of Tri3, Tri5, and Tri7 was used to determine the trichothecene genotype of 111 strains of F. graminearum collected during 2003 and 2009 growing seasons from fields located in the major wheat production area of Uruguay. The result showed that all except one of the isolates were of DON genotype, with the remainder of NIV genotype in years 2003 and 2009. All strains with the DON genotype were also of the 15-AcDON genotype in 2003 and nearly all (45/50) in 2009. No DON/3-AcDON genotypes were found in either growing season. No potential shifts in the populations were found in the trichothecene genotypes between 2003 and the 2009 epidemic FHB harvest seasons. This study provides the first data on trichothecene genotypes of F. graminearum strains isolated from wheat in Uruguay and add to the current regional knowledge of trichothecene genotypes.

  16. Candida famata (Debaryomyces hansenii) DNA sequences containing genes involved in riboflavin synthesis.

    Science.gov (United States)

    Voronovsky, Andriy Y; Abbas, Charles A; Dmytruk, Kostyantyn V; Ishchuk, Olena P; Kshanovska, Barbara V; Sybirna, Kateryna A; Gaillardin, Claude; Sibirny, Andriy A

    2004-11-01

    Previously cloned Candida famata (Debaryomyces hansenii) strain VKM Y-9 genomic DNA fragments containing genes RIB1 (codes for GTP cyclohydrolase II), RIB2 (encodes specific reductase), RIB5 (codes for dimethylribityllumazine synthase), RIB6 (encodes dihydroxybutanone phosphate synthase) and RIB7 (codes for riboflavin synthase) were sequenced. The derived amino acid sequences of C. famata RIB genes showed extensive homology to the corresponding sequences of riboflavin synthesis enzymes of other yeast species. The highest identity was observed to homologues of D. hansenii CBS767, as C. famata is the anamorph of this hemiascomycetous yeast. The D. hansenii CBS767 RIB3 gene encoding specific deaminase was cloned. This gene successfully complemented riboflavin auxotrophy of the rib3 mutant of flavinogenic yeast, Pichia guilliermondii. Putative iron-responsive elements (potential sites for binding of the transcription factors Fep1p or Aft1p and Aft2p) were found in the upstream regions of some C. famata and D. hansenii RIB genes. The sequences of C. famata RIB genes have been submitted to the EMBL data library under Accession Nos AJ810169-AJ810173.

  17. Ceratocystis larium sp. nov., a new species from Styrax benzoin wounds associated with incense harvesting in Indonesia.

    Science.gov (United States)

    van Wyk, M; Wingfield, B D; Clegg, P A; Wingfield, M J

    2009-06-01

    Styrax benzoin trees, native to the island Sumatra, Indonesia are wounded to produce resin that is collected and burned as incense. These wounds on trees commonly develop into expanding cankers that lead to tree death. The aim of this study was to consider whether Ophiostomatoid fungi, typically associated with wounds on trees might be associated with resin harvesting on S. benzoin. Samples were collected from the edges of artificially induced wounds, and particularly where cankers and staining of the vascular tissue was evident. Tissue samples were incubated in moist chambers and carrot baiting was also used to detect the presence of Ceratocystis spp. Fruiting structures with morphology typical of species in the C. fimbriata s.l. species complex and species in the anamorph genus Thielaviopsis were found, on both the incubated wood and the carrot baits. DNA sequences were generated for the Internal Transcribed Spacer regions 1 and 2 including the 5.8S rRNA gene, part of the beta-tubulin and the Transcription Elongation Factor 1-alpha gene regions. These data were compared with those of other species in the C. fimbriata s.l. species complex and Thielaviopsis using phylogenetic analysis. Morphology of the isolates in culture as well as phylogenetic inference showed that the Thielaviopsis sp. present on the wounds was T. basicola. The Ceratocystis sp. from S. benzoin represents a new taxon in the C. fimbriata s.l. complex described here as C. larium sp. nov.

  18. Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype.

    Science.gov (United States)

    Woudenberg, J H C; Aveskamp, M M; de Gruyter, J; Spiers, A G; Crous, P W

    2009-06-01

    The fungal pathogen Phoma clematidina is used as a biological agent to control the invasive plant species Clematis vitalba in New Zealand. Research conducted on P. clematidina as a potential biocontrol agent against C. vitalba, led to the discovery of two perithecial-forming strains. To assess the diversity of P. clematidina and to clarify the teleomorph-anamorph relationship, phylogenetic analyses of 18 P. clematidina strains, reference strains representing the Phoma sections in the Didymellaceae and strains of related species associated with Clematis were conducted. Partial sequences of the ITS1, ITS2 and 5.8S rRNA gene, the ss-tubulin gene and 28S rRNA gene were used to clarify intra- and inter-species relationships. These analyses revealed that P. clematidina resolves into three well-supported clades which appear to be linked to differences in host specificity. Based on these findings, Didymella clematidis is newly described and the descriptions of P. clematidina and D. vitalbina are amended.

  19. Large aperture freeform VIS telescope with smart alignment approach

    Science.gov (United States)

    Beier, Matthias; Fuhlrott, Wilko; Hartung, Johannes; Holota, Wolfgang; Gebhardt, Andreas; Risse, Stefan

    2016-07-01

    The development of smart alignment and integration strategies for imaging mirror systems to be used within astronomical instrumentation are especially important with regard to the increasing impact of non-rotationally symmetric optics. In the present work, well-known assembly approaches preferentially applied in the course of infrared instrumentation are transferred to visible applications and are verified during the integration of an anamorphic imaging telescope breadboard. The four mirror imaging system is based on a modular concept using mechanically fixed arrangements of each two freeform surfaces, generated by servo assisted diamond machining and corrected using Magnetorheological Finishing as a figuring and smoothing step. Surface testing include optical CGH interferometry as well as tactile profilometry and is conducted with respect to diamond milled fiducials at the mirror bodies. A strict compliance of surface referencing during all significant fabrication steps allow for an easy integration and direct measurement of the system's wave aberration after initial assembly. The achievable imaging performance, as well as influences of the tight tolerance budget and mid-spatial frequency errors, are discussed and experimentally evaluated.

  20. A versatile toolkit for high throughput functional genomics with Trichoderma reesei

    Energy Technology Data Exchange (ETDEWEB)

    Schuster, Andre; Bruno, Kenneth S.; Collett, James R.; Baker, Scott E.; Seiboth, Bernhard; Kubicek, Christian P.; Schmoll, Monika

    2012-01-02

    The ascomycete fungus, Trichoderma reesei (anamorph of Hypocrea jecorina), represents a biotechnological workhorse and is currently one of the most proficient cellulase producers. While strain improvement was traditionally accomplished by random mutagenesis, a detailed understanding of cellulase regulation can only be gained using recombinant technologies. RESULTS: Aiming at high efficiency and high throughput methods, we present here a construction kit for gene knock out in T. reesei. We provide a primer database for gene deletion using the pyr4, amdS and hph selection markers. For high throughput generation of gene knock outs, we constructed vectors using yeast mediated recombination and then transformed a T. reesei strain deficient in non-homologous end joining (NHEJ) by spore electroporation. This NHEJ-defect was subsequently removed by crossing of mutants with a sexually competent strain derived from the parental strain, QM9414.CONCLUSIONS:Using this strategy and the materials provided, high throughput gene deletion in T. reesei becomes feasible. Moreover, with the application of sexual development, the NHEJ-defect can be removed efficiently and without the need for additional selection markers. The same advantages apply for the construction of multiple mutants by crossing of strains with different gene deletions, which is now possible with considerably less hands-on time and minimal screening effort compared to a transformation approach. Consequently this toolkit can considerably boost research towards efficient exploitation of the resources of T. reesei for cellulase expression and hence second generation biofuel production.

  1. Evaluation of plant resistance inducers on different winter soft wheat cultivars against Septoria leaf blotch.

    Science.gov (United States)

    Ors, M; Siah, A; Randoux, B; Selim, S; Boizet, F; Couleaud, G; Maumene, C; Halama, P; Reignault, Ph

    2012-01-01

    Septoria tritici blotch (STB) caused by Mycosphaerella graminicola (anamorph: Zymoseptoria tritici) is one of the most devastating foliar diseases on bread wheat (Triticum aestivum L.). Because of the emergence of fungal strains highly resistant to mainly used fungicides and the deleterious impacts of these fungicides on the environment, development of alternative control strategies to protect wheat crops against STB is needed. The induction of plant resistance by elicitors is likely to be a helpful alternative. Our study aims at characterizing the efficiency of potential resistance inducers towards STB in three bread wheat cultivars differing in their resistance levels to the pathogen: Alixan (susceptible), Premio (moderately resistant) and Altigo (resistant). These cultivars were inoculated under controlled and semi-controlled conditions with the pathogenic M. graminicolo strain T01193 in order to assess the protective effect of three potential resistance inducers against the disease. Moreover, the direct antifungal effect bf these products was evaluated in vitro at different concentrations in order to verify their potential biocide activity. Furthermore, cytological analyses were performed in order to determine the effects of these products on the fungal infection process and to compare these effects among the three wheat cultivars. Finally, reactive oxygen species metabolism was investigated in the three cultivars during their interaction with T01193 by measuring peroxidase activity.

  2. Postembryonic development of the parasitic amphipod Hyperia galba

    Science.gov (United States)

    Dittrich, Birgit

    1987-06-01

    Hyperia galba Montagu is associated with gelatinous zooplankton as are many species of the Hyperiidea. The hosts preferred in the European seas are the large scyphomedusae Aurelia aurita, Chrysaora hysoscella, Rhizostoma pulmo, Cyanea capillata and Cyanea lamarckii, which harbour the first developmental stages. The anamorphic development produces young that are incapable of swimming at the time of hatching. They are characterized by an embryonic abdomen without extremities and external segmentation; the eyes are not completely developed and the mouth is primitive lacking bristles, molar and incisor. The postembryonic development, described in detail, is subdivided into two phases: the pantochelis phase and the protopleon phase; the former comprises only one stage; the latter can be subdivided into four stages. In the course of postnatal development the larval organs are reduced and characters typical of the adult are gradually differentiated. H. galba plays an important role as obligatory endoparasite of scyphomedusae at least during the first stages of development; without a host this amphipod cannot survive, neither benthically nor in the plankton. The transition from life in the female's marsupium to endoparasitism in the jellyfish generally occurs during stage of the postembryonic development which is the first stage of the protopleon phase. The specific adaptations of its reproductive biology to a parasitic mode of life such as moult inhibition under starvation, development of larval organs and the behavioural patterns of the females as well as the young are described. Further, the influence of external factors such as temperature and food supply on the course of development is examined.

  3. Site index for teak in Colombia

    Institute of Scientific and Technical Information of China (English)

    Danny A. Torres; Jorge I. del Valle; Guillermo Restrepo

    2012-01-01

    Determination of site quality is a basic tool for proper selection of locations and species,in management of forest plantations.Throughout the Caribbean studies of site quality are few and are hampered by statistical limitations,inappropriate growth models,and limited data.We fitted growth curves for dominant height to evaluate and classify site quality ofteak (Tectona grandis) plantations by using data from 44 permanent sample plots established since 1990 in 3-22 years old teak plantations in the Colombian Caribbean region.We used Korf's and von Bertalanffy's models to fit curves as non-linear effects models.Both models,with a single random parameter,were considered as adequate for dominant height growth modelling,but Korf's model was superior.The resulting curves were anamorphic and closely reflected high variability in site quality.Five site classes were clarified:at a base age of 12 years old,teak reached a mean dominant height of 24.8 m on the best sites,9.8 m in the worst sites,and in the averages sites,15.8-18.8 m.Using this model,we identified the best and the worst sites for teak plantations in the Caribbean region.This model proved a useful tool,not only for site quality evaluation,but also for improved teak plantation planning and management.

  4. Colony-PCR Is a Rapid Method for DNA Amplification of Hyphomycetes

    Directory of Open Access Journals (Sweden)

    Georg Walch

    2016-04-01

    Full Text Available Fungal pure cultures identified with both classical morphological methods and through barcoding sequences are a basic requirement for reliable reference sequences in public databases. Improved techniques for an accelerated DNA barcode reference library construction will result in considerably improved sequence databases covering a wider taxonomic range. Fast, cheap, and reliable methods for obtaining DNA sequences from fungal isolates are, therefore, a valuable tool for the scientific community. Direct colony PCR was already successfully established for yeasts, but has not been evaluated for a wide range of anamorphic soil fungi up to now, and a direct amplification protocol for hyphomycetes without tissue pre-treatment has not been published so far. Here, we present a colony PCR technique directly from fungal hyphae without previous DNA extraction or other prior manipulation. Seven hundred eighty-eight fungal strains from 48 genera were tested with a success rate of 86%. PCR success varied considerably: DNA of fungi belonging to the genera Cladosporium, Geomyces, Fusarium, and Mortierella could be amplified with high success. DNA of soil-borne yeasts was always successfully amplified. Absidia, Mucor, Trichoderma, and Penicillium isolates had noticeably lower PCR success.

  5. Safety evaluation of nuclease P1 from Penicillium citrinum.

    Science.gov (United States)

    Okado, Nobuo; Hasegawa, Kazushige; Mizuhashi, Fukutaro; Lynch, Barry S; Vo, Trung D; Roberts, Ashley S

    2016-02-01

    Nuclease P1 has been widely used in the food industry to enhance or create flavor. One commercial source of this enzyme is Penicillium citrinum, an anamorphic mesophilic fungus with a long history of safe use in Europe and Asia as a fermentation organism used in the production of ribonucleases. Given the intended use in food for human consumption, and noting its potential presence at trace levels in finished products, a series of safety studies including an in vitro Ames and chromosome aberration assay, an in vivo rat erythrocyte micronucleus assay and a 90-day oral toxicity study in rats were conducted. No mutagenic activity was observed in the Ames assay. Equivocal activity in the chromosome aberration assay was not replicated in the micronucleus assay at doses of up to 1007 mg total organic solids (TOS)/kg body weight (bw)/day. Following oral administration of nuclease P1 at dosages of 10.1, 101 or 1007 mg TOS/kg bw/day to Sprague-Dawley rats, no adverse effects on any study parameter were observed. The no-observed-adverse-effect level was considered to be 1007 mg TOS/kg bw/day. The results of the genotoxicity studies and subchronic rat study support the safe use in food production of nuclease P1 produced from P. citrinum.

  6. Identifying beneficial qualities of Trichoderma parareesei for plants.

    Science.gov (United States)

    Rubio, M Belén; Quijada, Narciso M; Pérez, Esclaudys; Domínguez, Sara; Monte, Enrique; Hermosa, Rosa

    2014-03-01

    Trichoderma parareesei and Trichoderma reesei (teleomorph Hypocrea jecorina) produce cellulases and xylanases of industrial interest. Here, the anamorphic strain T6 (formerly T. reesei) has been identified as T. parareesei, showing biocontrol potential against fungal and oomycete phytopathogens and enhanced hyphal growth in the presence of tomato exudates or plant cell wall polymers in in vitro assays. A Trichoderma microarray was used to examine the transcriptomic changes in T6 at 20 h of interaction with tomato plants. Out of a total 34,138 Trichoderma probe sets deposited on the microarray, 250 showed a significant change of at least 2-fold in expression in the presence of tomato plants, with most of them being downregulated. T. parareesei T6 exerted beneficial effects on tomato plants in terms of seedling lateral root development, and in adult plants it improved defense against Botrytis cinerea and growth promotion under salt stress. Time course expression patterns (0 to 6 days) observed for defense-related genes suggest that T6 was able to prime defense responses in the tomato plants against biotic and abiotic stresses. Such responses undulated, with a maximum upregulation of the jasmonic acid (JA)/ethylene (ET)-related LOX1 and EIN2 genes and the salt tolerance SOS1 gene at 24 h and that of the salicylic acid (SA)-related PR-1 gene at 48 h after T6 inoculation. Our study demonstrates that the T. parareesei T6-tomato interaction is beneficial to both partners.

  7. Celulitis por Microascus trigonosporus(anamorfo Scopulariopsis trigonospora

    Directory of Open Access Journals (Sweden)

    DELIA CANLE CORTIÑAS

    2013-06-01

    Full Text Available Resumen: Microascus trigonosporus ( anamorfo Scopulariopsis trigonospora es un hongo filamentoso ubicuo que se encuentra en el suelo , plumas de aves, material vegetal e insectos. Aunque Scopulariopsis spp se consideran comúnmente hongos contaminantes , pueden causar ocasionalmente infecciones en humanos, en especial onicomicosis . Excepcionalmente se han descrito infecciones de piel, abscesos cerebrales, endocarditis ,sinusitis e infecciones diseminadas por Scopulariopsis spp , casi siempre en pacientes inmunodeprimidos . En los últimos años se han publicado un mayor número de casos de infecciones oportunistas por Scopulariopsis spp y otros hialohifomicetos multiresistentes. Todavía no está establecido cuál es el mejor régimen de tratamiento para las infecciones por Scopulariopsis spp. Presentamos un caso excepcional de celulitis por Microascus trigonosporus en un paciente con tratamiento prolongado con corticoides. Abstract: Microascus trigonosporus ( Anamorph Scopulariopsis trigonospora is a cosmopolitan filamentous fungus that inhabits soil, feathers ,plant material and insects. While Scopulariopsis is commonly considered as a contaminat fungus it may cause occasionally infections in humans ,especially onychomycosis .Skin lesions, brain abscess , endocarditis, sinusitis and disseminated infections due to Scopulariopsis species have been rarely reported , usually in immunocompromised patients . Over the last few years opportunistic infections by Scopulariopsis species and others multi-resistant hyalohyphomycetes have been increasingly reported . No clear treatment regimen for Scopulariopsis species infections has been established yet. We present a exceptional case of cellulitis due to Microascus trigonosporus in a patient with prolonged steroid therapy.

  8. Leaf-litter microfungal community on poor fen plant debris in Torfy Lake area (Central Poland

    Directory of Open Access Journals (Sweden)

    Mateusz Wilk

    2014-06-01

    Full Text Available The purpose of this study was to initially evaluate the species diversity of microfungi growing on litter of 15 plant species occurring on the poor fen and neighbouring area of the Torfy Lake, Masovian voivodeship, Poland. The lake is located near the planned road investment (construction of the Warsaw southern express ring road S2. The place is biologically valuable as there are rare plant communities from Rhynchosporion albae alliance protected under the Habitats Directive adopted by the European Union. On the examined plant debris 73 taxa of fungi were recorded (3 basidiomycetes, 13 ascomycetes, 2 zygomycetes, 43 anamorphic ascomycetes, 12 unidentified. Two of them, Dicranidion sp. and Wentiomyces sp. are presented here as new to Poland. Among the plant species examined, the litter of Rhododendron tomentosum harbored the highest number of fungal taxa (16. The highest percents of substrate-specific microfungi (i.e. recorded only on one plant species was noted on R. tomentosum (81.3 %, and Pteridium aquilinum (75%. It is emphasized that the lake area should be protected not only because of rare plant community but also because of the uniqueness and diversity of mycobiota.

  9. Chemical characterization of bioactive compounds from the endophytic fungus Diaporthe helianthi isolated from Luehea divaricata

    Directory of Open Access Journals (Sweden)

    Vânia Specian

    2012-09-01

    Full Text Available Endophytic microorganisms, defined as fungi or bacteria that colonize the interior of plants without causing any immediate negative effects or damages, have reciprocal relationships with host plants. In some cases their presence is beneficial to the host due to the synthesis of bioactive compounds, among which several alcohols, esters, ketones and others that may react with other compounds and may be lethal to pathogenic microorganisms. Diaporthe helianthi (Phomopsis helianthi in its anamorphic phase is available worldwide, especially in Europe, Asia and America. Isolated in Europe as an agent of the sunflower stem cancer, it has also been endophytically isolated from tropical and temperate plants. A D. helianthi strain isolated from Luehea divaricata has been employed in current research. An investigation of the secondary metabolite from D. helianthi by CC and NMR of ¹H and 13C yielded the separation of 10 fractions and the identification of the phenolic compound 2(-4 hydroxyphenyl-ethanol (Tyrosol. Its antimicrobial reaction was tested and the ensuing antagonistic effects on the human pathogenic bacteria Enterococcus hirae, Escherichia coli, Micrococcus luteus, Salmonella typhi, Staphylococcus aureus, phytopathogenic Xanthomonas asc. phaseoli and phytopathogenic fungi were demonstrated. Results show that bioactive compounds and Tyrosol produced by D. helianthi have a biotechnological potential.

  10. Ascomycetous yeasts associated with naturally occurring fruits in a tropical rain forest.

    Science.gov (United States)

    Prada, G M; Pagnocca, F C

    1997-01-01

    Fruits from twenty different species of angiosperms were collected during the period from November, 1991 to January, 1992. Two hundred and two strains of yeasts and yeast-like fungi were isolated, of which 74% showed ascomycetic affinity. Candida was the predominant genus, followed by (in descending order of occurrence): Cryptococcus, Kloeckera, Sporobolomyces, Pichia, Hanseniaspora and Bullera. Black yeasts and other strains showing basidiomycetic affinity were also isolated. The genus Candida represented the highest number of identified species and the greatest variety of associated substrates. Among the ascomycetes and their anamorphs, 38 species were identified, with Kloeckera apiculata being the most frequent among the isolates and the one which occurred in the largest variety of substrates. Some of the biotypes designated as Candida sp. A, B, C, D, E, F, G, H, I, and Pichia sp. did not correspond to the standard species description found in the literature, and may represent new species. The strains of yeasts isolated in this study were characterized and incorporated into the Tropical Culture Collection of the Fundaao Tropical de Pesquisas e Tecnologia Andŕe Tosello, Campinas, São Paulo.

  11. Fumonisin production by Gibberella fujikuroi strains from Pinus species.

    Science.gov (United States)

    Mirete, S; Patiño, B; Vázquez, C; Jiménez, M; Hinojo, M J; Soldevilla, C; González-Jaén, M T

    2003-12-31

    Fumonisins are important mycotoxins basically produced by strains from the Gibberella fujikuroi species complex (with anamorphs in Fusarium genus) which contaminate food and feed products representing a risk to human and animal health. In this work, we report for the first time the fumonisin production of Fusarium moniliforme Sheldon strains associated to edible pine nuts of Pinus pinea. P. pinea is an important and widely distributed Pinus species in the Mediterranean area where their pine nuts are consumed raw or slightly processed in diverse food products. In this work, characterization and further identification of those strains were performed by polymerase chain reaction-restriction fragment length polymorphisms (PCR-RFLPs) of the intergenic spacer region of the rDNA (IGS) with the aid of the eight mating populations (A-H) described for G. fujikuroi species complex. The method was powerful to detect polymorphism, allowing discrimination between individuals and could be used to study the genetic relationships among them and within the G. fujikuroi species complex. Fusarium strains associated to Pinus radiata were also included in the present study. These strains did not produce fumonisins and showed no close relation with the strains isolated from P. pinea. The approach used in this work was rapid and proved to be efficient to assist identification and to characterize and analyse relatedness of new isolates within the G. fujikuroi species complex.

  12. 海南热带雨林腐木上两个无性型子囊菌酵母新种%Candida pseudocylindracea sp. nov. and Candida wuzhishanensis sp. nov. from Hainan Island, southern China

    Institute of Scientific and Technical Information of China (English)

    王辰; 王启明; 贾建华; 白逢彦

    2009-01-01

    SWains X2WZ07-4 and G2WZ06-1 isolated from rotten wood collected flom the tropical rainforests in Hainan Island were revealed to represent two new anamorphic, ascomycetous yeast species by molecular taxonomic characterization. Sequence analysis from the 26S rRNA gene D1/D2 domain showed that strains X2WZ07-4 and G2WZ06-1 were closely related with Candida cylindracea and C llanquihuensis, respectively. The two strains differed from their closest described relatives by 2.5% to 3.9% mismatches, indicating that they represent two novel species. Since sexual states were not observed in the cultures of the two strains in various media, two anamorphic names Candida pseudocylindracea sp. nov. (type strain X2WZ07-4T = AS 2.3788T = CBS 10854T) and C wuzhishanensis sp. nov. (type strain G2WZ06-1T = AS 2.3784T = CBS 10850T) are proposed for them, respectively.%用含木糖为唯一碳源和含葡萄糖及7.6%乙醇的两种富集培养基对采自海南热带雨林腐木样品中的酵母菌进行了分离培养.对分离出的酵母菌株进行的分子分类学研究表明,其中两株酵母菌X2WZ07-4和G2WZ06-1代表两个无性型子囊菌酵母新种.大亚基(268)rRNA基因D1/D2域序列分析显示,与X2WZ07-4和G2WZ06-1亲缘关系最近的已知种分别为Candida cylindracea和C llanquihuensis.在D1/D2域,X2WZ07-4与C cylindracea模式菌株的碱基序列差异为2.5%;G2WZ06-1与C. llanquihuensis模式菌株的序列差异为3.9%,均远大于酵母菌种间在此区域的序列差异(~1%).这两个新种分别被命名为拟柱形假丝酵母Candida pseudocylindracea sp.nov.(模式菌株:X2WZ07-4T=AS 2.3788T=CBS 10854T)和五指山假丝酵母Candida wuzhishanensis sp.nov.(模式菌株:G2WZ06-1T=AS 2.3784T=CBS 10850T).

  13. Toward a multivariate reanalysis of the North Atlantic Ocean biogeochemistry during 1998-2006 based on the assimilation of SeaWiFS chlorophyll data

    Science.gov (United States)

    Fontana, C.; Brasseur, P.; Brankart, J.-M.

    2013-01-01

    Today, the routine assimilation of satellite data into operational models of ocean circulation is mature enough to enable the production of global reanalyses describing the ocean circulation variability during the past decades. The expansion of the "reanalysis" concept from ocean physics to biogeochemistry is a timely challenge that motivates the present study. The objective of this paper is to investigate the potential benefits of assimilating satellite-estimated chlorophyll data into a basin-scale three-dimensional coupled physical-biogeochemical model of the North Atlantic. The aim is on the one hand to improve forecasts of ocean biogeochemical properties and on the other hand to define a methodology for producing data-driven climatologies based on coupled physical-biogeochemical modeling. A simplified variant of the Kalman filter is used to assimilate ocean color data during a 9-year period. In this frame, two experiments are carried out, with and without anamorphic transformations of the state vector variables. Data assimilation efficiency is assessed with respect to the assimilated data set, nitrate of the World Ocean Atlas database and a derived climatology. Along the simulation period, the non-linear assimilation scheme clearly improves the surface analysis and forecast chlorophyll concentrations, especially in the North Atlantic bloom region. Nitrate concentration forecasts are also improved thanks to the assimilation of ocean color data while this improvement is limited to the upper layer of the water column, in agreement with recent related literature. This feature is explained by the weak correlation taken into account by the assimilation between surface phytoplankton and nitrate concentrations deeper than 50 meters. The assessment of the non-linear assimilation experiments indicates that the proposed methodology provides the skeleton of an assimilative system suitable for reanalyzing the ocean biogeochemistry based on ocean color data.

  14. Preliminary in vitro insights into the use of natural fungal pathogens of leaf-cutting ants as biocontrol agents.

    Science.gov (United States)

    Folgarait, Patricia; Gorosito, Norma; Poulsen, Michael; Currie, Cameron R

    2011-09-01

    Leaf-cutting ants are one of the main herbivores of the Neotropics, where they represent an important agricultural pest. These ants are particularly difficult to control because of the complex network of microbial symbionts. Leaf-cutting ants have traditionally been controlled through pesticide application, but there is a need for alternative, more environmentally friendly, control methods such as biological control. Potential promising biocontrol candidates include the microfungi Escovopsis spp. (anamorphic Hypocreales), which are specialized pathogens of the fungi the ants cultivate for food. These pathogens are suppressed through ant behaviors and ant-associated antibiotic-producing Actinobacteria. In order to be an effective biocontrol agent, Escovopsis has to overcome these defenses. Here, we evaluate, using microbial in vitro assays, whether defenses in the ant-cultivated fungus strain (Leucoagaricus sp.) and Actinobacteria from the ant pest Acromyrmex lundii have the potential to limit the use of Escovopsis in biocontrol. We also explore, for the first time, possible synergistic biocontrol between Escovopsis and the entomopathogenic fungus Lecanicillium lecanii. All strains of Escovopsis proved to overgrow A. lundii cultivar in less than 7 days, with the Escovopsis strain isolated from a different leaf-cutting ant species being the most efficient. Escovopsis challenged with a Streptomyces strain isolated from A. lundii did not exhibit significant growth inhibition. Both results are encouraging for the use of Escovopsis as a biocontrol agent. Although we found that L. lecanii can suppress the growth of the cultivar, it also had a negative impact on Escovopsis, making the success of simultaneous use of these two fungi for biocontrol of A. lundii questionable.

  15. Diurnal variations of airborne fungal spores concentration in the town and rural area

    Directory of Open Access Journals (Sweden)

    Idalia Kasprzyk

    2012-12-01

    Full Text Available Airborne fungal spores were monitored in 2001-2002 in Rzeszów (town and its neighborhood. The aim of investigations was to ascertain if there were differences in diurnal variations of airborne fungal spores concentration between town and rural area. The sampling was carried out using volumetric method. Traps were located at the same heights - app. 12 m. Airborne spores were sampled continuously. Microscopical slides were prepared for each day. Analysis was carried out on one longitudinal band of 48 mm long divided into 24 segments corresponding following hours of day. The results were expressed as mean number of fungal spores per cubic meter per 24 hours. For this survey, five geni of allergenic fungi were selected: Alternaria, Botrytis, Cladosporium, Epicoccum, Ganoderma. The concentrations of their airborne spores were high or very high. It was calculated theoretical day, where the hourly count was the percentage mean of number of spores at that time every chosen day without rainfall from 2001 and 2001 years. The diurnal periodicity of Alternaria, Cladosporium, Epicoccum and Ganoderma showed one peak, while Botrytis two. Anamorphic spores peaked in the afternoon, while their minima occurred in the morning. The highest concentrations of Ganoderma basidiospores were at down or at night, but minima during the day. There were no clear differences in the peak values between two studied sites. The results indicate that maximum concentrations of all spores generally occurred a few hour earlier in the rural area than in the town. Probably, in the rural area airborne spores came from many local sources and their diurnal periodicity reflected rhythm of spore liberation. Towns are characterized by specific microclimate with higher temperature and wind blowing to the centre. In Rzeszów fungal spores could be transported outside and carried out by wind from distant sources. This study showed, among others, that habitat conditions are an important factors

  16. The Potential of Streptomyces as Biocontrol Agents against the Rice Blast Fungus, Magnaporthe oryzae (Pyricularia oryzae)

    Science.gov (United States)

    Law, Jodi Woan-Fei; Ser, Hooi-Leng; Khan, Tahir M.; Chuah, Lay-Hong; Pusparajah, Priyia; Chan, Kok-Gan; Goh, Bey-Hing; Lee, Learn-Han

    2017-01-01

    Rice is a staple food source for more than three billion people worldwide. However, rice is vulnerable to diseases, the most destructive among them being rice blast, which is caused by the fungus Magnaporthe oryzae (anamorph Pyricularia oryzae). This fungus attacks rice plants at all stages of development, causing annual losses of approximately 10–30% in various rice producing regions. Synthetic fungicides are often able to effectively control plant diseases, but some fungicides result in serious environmental and health problems. Therefore, there is growing interest in discovering and developing new, improved fungicides based on natural products as well as introducing alternative measures such as biocontrol agents to manage plant diseases. Streptomyces bacteria appear to be promising biocontrol agents against a wide range of phytopathogenic fungi, which is not surprising given their ability to produce various bioactive compounds. This review provides insight into the biocontrol potential of Streptomyces against the rice blast fungus, M. oryzae. The ability of various Streptomyces spp. to act as biocontrol agents of rice blast disease has been studied by researchers under both laboratory and greenhouse/growth chamber conditions. Laboratory studies have shown that Streptomyces exhibit inhibitory activity against M. oryzae. In greenhouse studies, infected rice seedlings treated with Streptomyces resulted in up to 88.3% disease reduction of rice blast. Studies clearly show that Streptomyces spp. have the potential to be used as highly effective biocontrol agents against rice blast disease; however, the efficacy of any biocontrol agent may be affected by several factors including environmental conditions and methods of application. In order to fully exploit their potential, further studies on the isolation, formulation and application methods of Streptomyces along with field experiments are required to establish them as effective biocontrol agents. PMID:28144236

  17. Scientific Opinion on the risk to plant health posed by Dothistroma septosporum (Dorog. M. Morelet (Mycosphaerella pini E. Rostrup, syn. Scirrhia pini and Dothistroma pini Hulbary to the EU territory with the identification and evaluation of risk reduction options

    Directory of Open Access Journals (Sweden)

    EFSA Panel on Plant Health (PLH

    2013-01-01

    Full Text Available The Panel on Plant Health conducted a pest risk assessment for Scirrhia pini for the European Union (EU territory, identified risk management options and evaluated their effectiveness. The risk assessment was conducted taking into account current EU legislation. The Panel also provided an opinion on the effectiveness of the present EU requirements against this organism listed in Council Directive 2000/29/EC. Considering that there has been taxonomic confusion over the pest mentioned in the EU plant health legislation, the assessment was carried out for Dothistroma septosporum (the anamorph of S. pini, the latter renamed to Mycosphaerella pini and Dothistroma pini (teleomorph unknown, both of which cause Dothistroma needle blight. Three major pathways for entry were identified: host plants intended for planting/grafting (excluding fruit and seeds, natural means (wind, rain, wind-driven rain, etc., and host plants and plant parts with foliage not intended for planting (e.g., fresh branches, cut Christmas trees, etc.; probability of entry was considered very likely, likely and unlikely, respectively, with high uncertainty. The establishment and further spread were both considered very likely. The current consequences were considered major and they include loss of wood volume, tree mortality, and losses in terms of landscape value, amenity value, recreational uses and tourism. The Panel concluded that introduction and spread of the two pests are not fully prevented by Council Directive 2000/29/EC, mainly because of the possibility to import and trade host plant material other than Pinus plants for planting. In order to prevent the potentially serious impacts in those parts of the risk assessment area where the pathogens are currently not known to occur, additional risk reduction options have been identified, in the form of simultaneous implementation of measures targeted at reducing the movement of infected host plants and the further spread of the

  18. A newly developed real-time PCR assay for detection and quantification of Fusarium oxysporum and its use in compatible and incompatible interactions with grafted melon genotypes.

    Science.gov (United States)

    Haegi, Anita; Catalano, Valentina; Luongo, Laura; Vitale, Salvatore; Scotton, Michele; Ficcadenti, Nadia; Belisario, Alessandra

    2013-08-01

    A reliable and species-specific real-time quantitative polymerase chain reaction (qPCR) assay was developed for detection of the complex soilborne anamorphic fungus Fusarium oxysporum. The new primer pair, designed on the translation elongation factor 1-α gene with an amplicon of 142 bp, was highly specific to F. oxysporum without cross reactions with other Fusarium spp. The protocol was applied to grafted melon plants for the detection and quantification of F. oxysporum f. sp. melonis, a devastating pathogen of this cucurbit. Grafting technologies are widely used in melon to confer resistance against new virulent races of F. oxysporum f. sp. melonis, while maintaining the properties of valuable commercial varieties. However, the effects on the vascular pathogen colonization have not been fully investigated. Analyses were performed on 'Charentais-T' (susceptible) and 'Nad-1' (resistant) melon cultivars, both used either as rootstock and scion, and inoculated with F. oxysporum f. sp. melonis race 1 and race 1,2. Pathogen development was compared using qPCR and isolations from stem tissues. Early asymptomatic melon infections were detected with a quantification limit of 1 pg of fungal DNA. The qPCR protocol clearly showed that fungal development was highly affected by host-pathogen interaction (compatible or incompatible) and time (days postinoculation). The principal significant effect (P ≤ 0.01) on fungal development was due to the melon genotype used as rootstock, and this effect had a significant interaction with time and F. oxysporum f. sp. melonis race. In particular, the amount of race 1,2 DNA was significantly higher compared with that estimated for race 1 in the incompatible interaction at 18 days postinoculation. The two fungal races were always present in both the rootstock and scion of grafted plants in either the compatible or incompatible interaction.

  19. RNA-mediated gene silencing in the cereal fungal pathogen Cochliobolus sativus.

    Science.gov (United States)

    Leng, Yueqiang; Wu, Chengxiang; Liu, Zhaohui; Friesen, Timothy L; Rasmussen, Jack B; Zhong, Shaobin

    2011-04-01

    A high-throughput RNA-mediated gene silencing system was developed for Cochliobolus sativus (anamorph: Bipolaris sorokiniana), the causal agent of spot blotch, common root rot and black point in barley and wheat. The green fluorescent protein gene (GFP) and the proteinaceous host-selective toxin gene (ToxA) were first introduced into C. sativus via the polyethylene glycol (PEG)-mediated transformation method. Transformants with a high level of expression of GFP or ToxA were generated. A silencing vector (pSGate1) based on the Gateway cloning system was developed and used to construct RNA interference (RNAi) vectors. Silencing of GFP and ToxA in the transformants was demonstrated by transformation with the RNAi construct expressing hairpin RNA (hpRNA) of the target gene. The polyketide synthase gene (CsPKS1), involved in melanin biosynthesis pathways in C. sativus, was also targeted by transformation with the RNAi vector (pSGate1-CsPKS1) encoding hpRNA of the CsPKS1 gene. The transformants with pSGate1-CsPKS1 exhibited an albino phenotype or reduced melanization, suggesting effective silencing of the endogenous CsPKS1 in C. sativus. Sectors exhibiting the wild-type phenotype of the fungus appeared in some of the CsPKS1-silenced transformants after subcultures as a result of inactivation or deletions of the RNAi transgene. The gene silencing system established provides a useful tool for functional genomics studies in C. sativus and other filamentous fungi.

  20. In situ stability of substrate-associated cellulases studied by DSC.

    Science.gov (United States)

    Alasepp, Kadri; Borch, Kim; Cruys-Bagger, Nicolaj; Badino, Silke; Jensen, Kenneth; Sørensen, Trine H; Windahl, Michael S; Westh, Peter

    2014-06-24

    This work shows that differential scanning calorimetry (DSC) can be used to monitor the stability of substrate-adsorbed cellulases during long-term hydrolysis of insoluble cellulose. Thermal transitions of adsorbed enzyme were measured regularly in subsets of a progressing hydrolysis, and the size of the transition peak was used as a gauge of the population of native enzyme. Analogous measurements were made for enzymes in pure buffer. Investigations of two cellobiohydrolases, Cel6A and Cel7A, from Trichoderma reesei, which is an anamorph of the fungus Hypocrea jerorina, showed that these enzymes were essentially stable at 25 °C. Thus, over a 53 h experiment, Cel6A lost less than 15% of the native population and Cel7A showed no detectable loss for either the free or substrate-adsorbed state. At higher temperatures we found significant losses in the native populations, and at the highest tested temperature (49 °C) about 80% Cel6A and 35% of Cel7A was lost after 53 h of hydrolysis. The data consistently showed that Cel7A was more long-term stable than Cel6A and that substrate-associated enzyme was less long-term stable than enzyme in pure buffer stored under otherwise equal conditions. There was no correlation between the intrinsic stability, specified by the transition temperature in the DSC, and the long-term stability derived from the peak area. The results are discussed with respect to the role of enzyme denaturation for the ubiquitous slowdown observed in the enzymatic hydrolysis of cellulose.

  1. [Taxonomic study of clinic isolates of Trichophyton in Rosario, Argentina].

    Science.gov (United States)

    Tartabini, Mirta L; Bonino, Guillermo S; Racca, Liliana; Luque, Alicia G

    2013-01-01

    Due to the pleomorphism and cultural variability displayed by species of the genus Trichophyton, the identification methods based solely on morphological features are usually insufficient for their classification. The goal of the present work was to test a set of phenotypic methods in order to identify fungal isolates that belong to the aforementioned genus. These methods were based on a molecular taxonomic technique used as standard. Clinical isolates (56) were used as samples along with 6 reference strains. Macro and micromorphological studies were performed as well as biochemical and physiological tests such as in vitro hair perforation, nutritional requirements in Trichophyton agar media, urease production and growth on bromocresol purple-milk. solids-glucose (BCP-MS-G) agar. Additionally, PCR fingerprinting using the (GACA)4 primer was employed. As a result of the PCR method, specific profiles were observed for Microsporum canis, Epidermophyton floccosum, Trichophyton rubrum and Trichophyton interdigitale. Identical profiles were obtained for Arthroderma benhamiae y Trichophyton erinacei. Of the total number of clinical isolates, 39 matched the T. rubrum profile while 13 corresponded to A. benhamiae and 4 to T. interdigitale. The most useful phenotypic test to differentiate between T. rubrum and T. mentagrophytes complex strains was alkalinization of the BCP-MS-G medium. Phenotypic tests did not allow differentiation among the T. mentagrophytes complex species. On the other hand, the molecular technique allowed characterization of T. rubrum isolates as well as of those observed in our study and included in the T. mentagrophytes complex: T. interdigitale and Trichophyton sp., the anamorph of A. benhamiae.

  2. Molecular Characterization and In Vitro Antifungal Susceptibility of 316 Clinical Isolates of Dermatophytes in Iran.

    Science.gov (United States)

    Ansari, Saham; Hedayati, Mohammad T; Zomorodian, Kamiar; Pakshir, Keyvan; Badali, Hamid; Rafiei, Abdollah; Ravandeh, Mostafa; Seyedmousavi, Seyedmojtaba

    2016-02-01

    Dermatophytosis is a common mycotic infection of the skin, nail, and hair, associated with major public health concern worldwide. Various species of dermatophytes show significant differences in susceptibility to antifungals. Here, we present the antifungal susceptibility of a large collection of molecularly identified dermatophyte isolates obtained from tropical region of south of Iran. A total of 9485 patients clinically suspected to have cutaneous fungal infections were examined. Dermatophytosis was confirmed in 1502 cases by direct microscopy and culture. Three hundred and sixteen isolates recovered in culture were identified to species level using PCR sequencing of ITS region and RFLP. Tinea corporis was the most prevalent type of clinical manifestation (35.2 %), followed by tinea cruris (17 %), tinea capitis (12.8 %), tinea pedis (11.3 %), tinea manuum (11 %), tinea unguium (6.9 %), and tinea barbae (5.8 %). Trichophyton interdigitale was the most common isolate (49.36 %), followed by Trichophyton rubrum (18.98 %), Epidermophyton floccosum (13.29 %), Microsporum canis (9.17 %), Arthroderma benhamiae (T. anamorph of A. benhamiae; 5.38 %), and Trichophyton tonsurans (3.79 %). Overall, irrespective of the geographical region, terbinafine was the most potent antifungal against all isolates, with an MIC range of 0.002-0.25 μg/mL, followed by itraconazole (0.004-0.5 μg/mL), griseofulvin (0.125-8 μg/mL), and fluconazole (4-128 μg/mL). Analysis of our data revealed a significant increase in the frequency of A.benhamiae, which definitely warrants further investigation to explore source of this infection in south of Iran. Moreover, terbinafine was the most effective antifungal against all isolates, in vitro.

  3. Thermal Decomposition Process of Ammonium Paratungstate%仲钨酸铵的热分解过程研究

    Institute of Scientific and Technical Information of China (English)

    王雪晴; 杨建参; 刘山宇; 李炳山

    2014-01-01

    The thermal decomposition of ammonium paratungstate in different atmosphere is discussed. The thermal decomposition is characterized by four steps, including crystal water release, ammonia leaving behind anamorphous compounds, ammonium tungsten bronze formation, WO 3 crystallization. The decomposition of ammonium paratungstate plays an important role on tungsten powder particle by conducting the industrial production of different particle size of tungsten powder.%仲钨酸铵的分解过程会受到原料APT结构、温度、气氛、分析方法等因素的影响,其热分解过程直接影响产品质量。综述了国内外采用热分析方法(TG-DTA/DSC)结合X射线衍射分析(XRD)、质谱分析(MS)以及红外光谱分析(FTIR)等实验手段所得出的仲钨酸铵在不同气氛下分解过程的研究成果,并对文献中的差异做出了解释。文章认为该过程可分为四个阶段,前三个阶段分别为释放结晶水、释放氨气形成无定形化合物和释放氨气、水蒸气形成铵钨青铜(ATB)产物,第四个分解阶段为ATB分解成WO3的过程。

  4. Occurrence of fungi and fungus-like organisms in the Horodnianka River in the vicinity of Białystok, Poland.

    Science.gov (United States)

    Kiziewicz, Bozena; Zdrojkowska, Ewa; Gajo, Bernadetta; Godlewska, Anna; Muszyńska, Elzbieta; Mazalska, Bozenna

    2011-01-01

    Studies of fungi and fungus- like organisms in the northeastern Poland have mainly concentrated on running waters in the vicinity of Białystok, including the Horodnianka River. The main objective was to investigate biodiversity of fungi and fungus-like organisms which take part in decomposition of organic matter commonly found in inland waters. To obtain a complete picture of species composition of fungi and fungus-like organisms in running waters we decided to explore representative sites of the Horodnianka River such as Olmonty, Hryniewicze and Horodniany with close localization of landfill. Fungal species were isolated using baiting technique. Baits of onion skin (Alium cepa), hemp-seeds (Cannabis sativa), impregnated cellophane and snake skin (Natrix natrix) were applied to isolate fungi from water of the Horodnianka River. The fungal community consists of 26 species, 10 species of fungi belonging to class Chytridiomycetes (3), anamorphic fungi (6), and Zygomycetes (1). 16 species belong to fungus-like organisms from class Oomycetes. Most of the recognized species have already been found in other running waters. From all the examined habitats the fungi belonging to 26 species of 18 genera Achlya, Alternaria, Aphanomyces, Aspergillus, Catenophlyctis, Dictyuchus, Fusarium, Karlingia, Lagenidium, Leptomitus, Olpidiopsis, Penicillium, Phlyctochytrium, Pythium, Saprolegnia, Scoliognia, Thraustotheca and Zoophagus were obtained. Certain fungal species like Aphanomyces laevis, Fusarium aqueductum, F. moniliforme, F. oxysporum, Leptomitus lacteus, Saprolegnia feax and S. parasitica were found at all the study sites. Among fungi potentially pathogenic and allergogenic for humans the genera Alternaria, Aspergillus, Fusarium, Lagenidium and Penicillium have already been described. However, the species Lagenidium giganteum and Achlya androgyna are new in the fungal biota of Poland. The greatest number of fungal species occurred in Olmonty (24), the smallest in Horodniany

  5. Molecular Prediction of Pea Footrot Disease

    Directory of Open Access Journals (Sweden)

    Ebimieowei Etebu

    2011-11-01

    Full Text Available PCR based assays were developed in this study to quantitatively predict pea footrot infections in agricultural soils prior to cultivation. Pea footrot disease due to Nectria haematococca (anamorph Fusarium solani f.sp. pisi is linked to the presence of six pea pathogenicity (PEP genes (PDA1, PEP1, PEP2, PEP3, PEP4 and PEP5. Whilst molecular assays have been used recently to selectively detect these genes in soil- DNA, quantitative molecular assay has been extended to only the PEP3 gene whose role in pea pathogenicity is yet unknown. In this research, PCR-based quantification assays were developed to quantify the two pea pathogenicity genes (PDA and PEP5 with identified roles in pea pathogenicity from soil-DNA obtained from fields with pea footrot histories. Results showed that the quantitative molecular assays developed herein were both efficient. Amplification efficiency of the Q-PCR assay for the PDA and PEP5 gene were 97 and 89%, respectively. PDA and PEP5 gene copy numbers were shown to vary significantly (p = 0.01 between fields. However, the PDA gene copy numbers were relatively higher than those of the PEP5 gene in agricultural fields. The genes, especially PEP5 gene, were comparable to and positively correlated to the number of spores of pathogenic N. haematococca, and footrot disease. The PDA gene alone in soil could not cause footrot disease in peas after 8 weeks of planting; assays directed at it alone may therefore be insufficient to predict pea footrot disease. However, the molecular assay targeting the PDA alongside the PEP5 gene offers the opportunity for quantitative prediction of pea footrot infections in agricultural soils prior to cultivation.

  6. Field lens multiplexing in holographic 3D displays by using Bragg diffraction based volume gratings

    Science.gov (United States)

    Fütterer, G.

    2016-11-01

    Applications, which can profit from holographic 3D displays, are the visualization of 3D data, computer-integrated manufacturing, 3D teleconferencing and mobile infotainment. However, one problem of holographic 3D displays, which are e.g. based on space bandwidth limited reconstruction of wave segments, is to realize a small form factor. Another problem is to provide a reasonable large volume for the user placement, which means to provide an acceptable freedom of movement. Both problems should be solved without decreasing the image quality of virtual and real object points, which are generated within the 3D display volume. A diffractive optical design using thick hologram gratings, which can be referred to as Bragg diffraction based volume gratings, can provide a small form factor and high definition natural viewing experience of 3D objects. A large collimated wave can be provided by an anamorphic backlight unit. The complex valued spatial light modulator add local curvatures to the wave field he is illuminated with. The modulated wave field is focused onto to the user plane by using a volume grating based field lens. Active type liquid crystal gratings provide 1D fine tracking of approximately +/- 8° deg. Diffractive multiplex has to be implemented for each color and for a set of focus functions providing coarse tracking. Boundary conditions of the diffractive multiplexing are explained. This is done in regards to the display layout and by using the coupled wave theory (CWT). Aspects of diffractive cross talk and its suppression will be discussed including longitudinal apodized volume gratings.

  7. The information highways of a biotechnological workhorse – signal transduction in Hypocrea jecorina

    Directory of Open Access Journals (Sweden)

    Schmoll Monika

    2008-09-01

    Full Text Available Abstract Background The ascomycete Hypocrea jecorina (anamorph Trichoderma reesei is one of the most prolific producers of biomass-degrading enzymes and frequently termed an industrial workhorse. To compete for nutrients in its habitat despite its shortcoming in certain degradative enzymes, efficient perception and interpretation of environmental signals is indispensable. A better understanding of these signals as well as their transmission machinery can provide sources for improvement of biotechnological processes. Results The genome of H. jecorina was analysed for the presence and composition of common signal transduction pathways including heterotrimeric G-protein cascades, cAMP signaling, mitogen activated protein kinases, two component phosphorelay systems, proteins involved in circadian rhythmicity and light response, calcium signaling and the superfamily of Ras small GTPases. The results of this survey are discussed in the context of current knowledge in order to assess putative functions as well as potential impact of alterations of the respective pathways. Conclusion Important findings include an additional, bacterial type phospholipase C protein and an additional 6-4 photolyase. Moreover the presence of 4 RGS-(Regulator of G-protein Signaling proteins and 3 GprK-type G-protein coupled receptors comprising an RGS-domain suggest a more complex posttranslational regulation of G-protein signaling than in other ascomycetes. Also the finding, that H. jecorina, unlike yeast possesses class I phosducins which are involved in phototransduction in mammals warrants further investigation. An alteration in the regulation of circadian rhythmicity may be deduced from the extension of both the class I and II of casein kinases, homologues of which are implicated in phosphorylation of FRQ in Neurospora crassa. On the other hand, a shortage in the number of the pathogenicity related PTH11-type G-protein coupled receptors (GPCRs as well as a lack of

  8. HONGOS NATIVOS CON POTENCIAL DEGRADADOR DE TINTES INDUSTRIALES EN EL VALLE DE ABURRÁ, COLOMBIA NATIVE FUNGI WITH INDUSTRIAL DYE DEGRADING POTENTIAL IN THE ABURRÁ VALLEY, COLOMBIA

    Directory of Open Access Journals (Sweden)

    Xiomara Chanagá Vera

    2012-06-01

    Full Text Available Resumen. Los colorantes industriales poseen estructuras químicas estables que dificultan su tratamiento mediante procesos fisicoquímicos convencionales. En los últimos años, como una alternativa biotecnológica para la degradación de compuestos recalcitrantes, se han utilizado hongos ligninolíticos de diferentes grupos taxonómicos, que producen enzimas oxidantes de dichas moléculas. El aislamiento e identificación de especies fúngicas nativas con potencial decolorante, resulta promisorio para biorremediar efluentes provenientes de industrias textiles. En esta investigación se identificaron, con base en análisis de secuencias de las regiones ITS1 e ITS2 y 28S del ADNr, y por sus características morfológicas, cuatro hongos nativos aislados de material lignocelulósico colectado en el Valle de Aburrá (Antioquia, Colombia. Los aislamientos fueron identificados como el ascomycete Leptosphaerulina sp., y los hongos anamórficos Trichoderma viride (dos cepas y Aspergillus niger.Abstract. Synthetic dyes have stable chemical structures that hinder their treatment by conventional physicochemical processes. In recent years, as a biotechnological alternative for degradation of these recalcitrant compounds, wood degrading fungi of different taxonomic groups have been used. These fungi produced enzymes with oxidative potential for those molecules. The isolation and identification of ligninolytic fungi with potential for discoloration is promising for bioremediation of effluents from textile industries. In this research, we identified four native fungi isolated from lignocellulosic material in the Aburra Valley (Antioquia, Colombia. Identification was made based on sequence analysis of ITS1-ITS2 regions and 28S rDNA as well as morphological characteristics. The fungi were identified as the ascomycete Leptosphaerulina sp., and the anamorphic species Trichoderma viride (two strains and Aspergillus niger.

  9. Entomopathogenic fungi from 'El Eden' Ecological Reserve, Quintana Roo, Mexico.

    Science.gov (United States)

    Torres-Barragán; Anaya, Ana Luisa; Alatorre, Raquel; Toriello, Conchita

    2004-07-01

    Entomopathogenic fungi were isolated and identified from insects collected from the tropical forest and an agricultural area at El Eden Ecological Reserve, Quintana Roo, Mexico. These fungi were studied to determine their potential as biological control agents of greenhouse Trialeurodes vaporariorum (Homoptera: Aleyrodidae), and to contribute to the knowledge of biodiversity of this area. No pest insects were observed in the tropical forest. In contrast, all insects collected in the agricultural area were considered important pests by the local farmers, with the whitefly, as the most relevant, plentiful in Cucurbitaceae plants. From approximately 3400 collected insects in three different surveys, different anamorphic Ascomycetes were recovered. One isolate of Aspergillus sp., two of Penicillium sp., three of Paecilomyces marquandii, and three of Verticillium sp. out of 308 insects (2.9%) from three insect orders, Hymenoptera, Diptera and Isoptera in the tropical forest. In contrast, a higher number of fungal isolates were recovered from the agricultural area: three isolates from Aspergillus parasiticus, 100 of Fusarium moniliforme, one of Aschersonia sp., and 246 of Fusarium oxysporum out of 3100 insects (11.3%) from three insect orders, Homoptera, Coleoptera and Lepidoptera. The results of this study show Fusarium moniliforme and F oxysporum as highly virulent to infected insects in the agricultural area, with 100 and 246 isolates respectively, out of 350 infected insects of 3100 studied specimens. Laboratory whitefly nymph bioassays with isolates Ed29a of F. moniliforme, Ed322 of F. oxysporum, and Ed22 of P marquandii showed 96 to 97.5% insect mortality with no significant differences (P < 0.05) among them. F. oxysporum Ed322 produced no mortality when inoculated on tomato, bean, squash and maize seedlings (with and without injuries) compared to the 100% mortality caused by phytopathogenic strains, F. oxysporum f. sp. lycopersici and F. oxysporum f. sp. radicis

  10. Adiciones a la Biota de Uredinales (fungi de Colombia Addictions to the Uredinales Biota (fungi in Colombia

    Directory of Open Access Journals (Sweden)

    Katherin Maritza Vanegas Berrouet

    2011-12-01

    Full Text Available Colecciones de plantas con síntomas de hongos royas (Uredinales, Basidiomycota realizadas en los últimos años en los departamentos de Amazonas, Antioquia, Caldas, Cundinamarca, Tolima y Valle del Cauca han sido estudiadas y depositadas en el Museo Micológico de la Universidad Nacional de Colombia, Sede Medellín (MMUNM. Entre las novedades encontradas, se registran por primera vez para Colombia las royas: Puccinia investita, Sphenospora pallida, Crossopsora piperis, Uredo psychotriicola y Pucciniosira solani. Se adiciona la familia botánica Dioscoreaceae para la Biota de Uredinales colombianos. Se hace la corrección del nombre anamórfico Uredo parthenii publicado para Colombia en 2003, por el nombre teliomorfico válido Puccinia schileana. Son registrados seis nuevos hospedantes parasitados por royas en Colombia, entre estos reviste importancia la colección sobre Origanum vulgare L. una planta aromática y medicinal cultivada mundialmente.Plant collections with symptoms of rusts fungi (Uredinales, Basidiomycota made during recent years in provinces of Amazonas, Antioquia, Caldas, Cundinamarca, Tolima and Valle del Cauca have been studied and deposited in Museo Micológico of Universidad Nacional de Colombia, Sede Medellín (MMUNM. The rusts species Puccinia investita, Sphenospora pallida, Crossopsora piperis, Uredo psychotriicola and Pucciniosira solani are new records for Colombia. A first record for this country of rust fungi in plants of family Dioscoreaceae has been also made. The anamorphic name Uredo parthenii published in 2003 in Colombia, has been corrected by the valid teleomorph Puccinia schileana. Finally, six new hosts parasitized by rusts are recorded, including Origanum vulgare L. a world-wide important aromatic and medicinal plant.

  11. Seed propagation and re-introduction of the U.S. federally endangered Hawaiian endemic, Platanthera holochila (Hbd. Krzl. (Orchidaceae

    Directory of Open Access Journals (Sweden)

    Lawrence W. Zettler

    2012-02-01

    Full Text Available Platanthera holochila (Hbd. Krzl. [syn = Peristylus holochila (Hbd N. Hallé] is the rarest of three orchids endemic to the Hawaiian Archipelago. As of 2011, 33 individual plants of this U.S. Federally endangered species remained on three islands with only one specimen known to occur on Kauai. This paper presents a summary of experiments aimed at cultivating this species from seed leading to the reintroduction of seedlings. We describe: 1 the mycorrhizal fungi acquired from P. holochila protocorms on Molokai, 2 the role of light vs. dark pretreatment on symbiotic seed germination using a mycorrhizal fungus from Florida, and 3 asymbiotic germination on three media (Murashige and Skoog, Knudson C, P723. Protocorms recovered in situ using seed packets yielded seven strains of a mycorrhizal fungus assignable to the anamorphic genus Epulorhiza Moore, but none of these strains prompted seed germination in vitro. Using the mycorrhizal fungus from Florida, no significant differences were detected between light pre-treatment vs. dark incubation on seed germination or development, but statistical differences were evident among two agar types tested. Seeds sown on acidified (pH 5.0 asymbiotic medium P723 (PhytoTechnology Labs developed to the leaf-bearing stage 351 days after sowing and incubation in darkness at 16–19 °C. Seedlings illuminated 451 days after sowing were eventually established on soil in a greenhouse (ex vitro. A total of 85 seedlings were promptly transported to Hawaii in March 2011. A minimum of 3.1 years is required for the propagation of P. holochila from seed using acidified asymbiotic medium P723.

  12. Morphology and enzyme production of Trichoderma reesei Rut C-30 are affected by the physical and structural characteristics of cellulosic substrates.

    Science.gov (United States)

    Peciulyte, Ausra; Anasontzis, George E; Karlström, Katarina; Larsson, Per Tomas; Olsson, Lisbeth

    2014-11-01

    The industrial production of cellulolytic enzymes is dominated by the filamentous fungus Trichoderma reesei (anamorph of Hypocrea jecorina). In order to develop optimal enzymatic cocktail, it is of importance to understand the natural regulation of the enzyme profile as response to the growth substrate. The influence of the complexity of cellulose on enzyme production by the microorganisms is not understood. In the present study we attempted to understand how different physical and structural properties of cellulose-rich substrates affected the levels and profiles of extracellular enzymes produced by T. reesei. Enzyme production by T. reesei Rut C-30 was studied in submerged cultures on five different cellulose-rich substrates, namely, commercial cellulose Avicel® and industrial-like cellulosic pulp substrates which consist mainly of cellulose, but also contain residual hemicellulose and lignin. In order to evaluate the hydrolysis of the substrates by the fungal enzymes, the spatial polymer distributions were characterised by cross-polarisation magic angle spinning carbon-13 nuclear magnetic resonance (CP/MAS (13)C-NMR) in combination with spectral fitting. Proteins in culture supernatants at early and late stages of enzyme production were labeled by Tandem Mass Tags (TMT) and protein profiles were analysed by liquid chromatography-tandem mass spectrometry. The data have been deposited to the ProteomeXchange with identifier PXD001304. In total 124 proteins were identified and quantified in the culture supernatants, including cellulases, hemicellulases, other glycoside hydrolases, lignin-degrading enzymes, auxiliary activity 9 (AA9) family (formerly GH61), supporting activities of proteins and enzymes acting on cellulose, proteases, intracellular proteins and several hypothetical proteins. Surprisingly, substantial differences in the enzyme profiles were found even though there were minor differences in the chemical composition between the cellulose-rich substrates.

  13. 佛肚竹枯萎病的研究%A STUDY ON THE WILT DISEASE OF BAMBUSA VENTRICOSA

    Institute of Scientific and Technical Information of China (English)

    宋漳; 林毓银

    2001-01-01

    The wilt disease of Bambusa ventricosa was a serious disease occured in Nanping city, Fujian Province. Thesymptoms of the disease, identification, inoculation, biological characteristics of the causal organism and bionomics of thewilt disease were studied. The species was identified as Nectria ditissirna Tul. at sexual phase, and as Fusarium semitec tum Berk. &Rav. at anamorphic state. The causal organism of wilt disease grew vigorously on the PSA and PSA + 10%decoction of culm media, and formed white coloured colonies. After incubation of 7 days at 28℃ , a great amount of macro-conidia was produced, no stroma and perithecia were formed after 30 days. The stroma and ascospore were only producedunder natural condition. The preference temperature for mycelia growth was between 25 ~ 28 ℃ , and the optimum pH val-ues was at 6 ~ 7. The optimum temperature for conidia and ascospores germination was between 25 ~ 28℃, and the opti-mum pH values was at 6 ~ 7. The high relative humidity ( RH 96.1% ~ 100% ) was necessary for the germination ofconidia and ascospores. The results of experiments showed that the pathogen of the wilt disease overwintered on the soil,and disseminated by winds and rains to infect the wounded stem base of Bambusa ventricosa. The primary infection occurredfrom the last ten days of February or the first days of March. The peak infection occurred from the first ten days of Marchto the second ten days of April during early summer rains. The infection ceased from the second ten days or the last tendays of May. The freeze injury was possibly important factor to induce infection of the wilt disease.

  14. Waste Soybean Oil and Corn Steep Liquor as Economic Substrates for Bioemulsifier and Biodiesel Production by Candida lipolytica UCP 0998

    Science.gov (United States)

    Souza, Adriana Ferreira; Rodriguez, Dayana M.; Ribeaux, Daylin R.; Luna, Marcos A. C.; Lima e Silva, Thayse A.; Andrade, Rosileide F. Silva; Gusmão, Norma B.; Campos-Takaki, Galba M.

    2016-01-01

    Almost all oleaginous microorganisms are available for biodiesel production, and for the mechanism of oil accumulation, which is what makes a microbial approach economically competitive. This study investigated the potential that the yeast Candida lipolytica UCP0988, in an anamorphous state, has to produce simultaneously a bioemulsifier and to accumulate lipids using inexpensive and alternative substrates. Cultivation was carried out using waste soybean oil and corn steep liquor in accordance with 22 experimental designs with 1% inoculums (107 cells/mL). The bioemulsifier was produced in the cell-free metabolic liquid in the late exponential phase (96 h), at Assay 4 (corn steep liquor 5% and waste soybean oil 8%), with 6.704 UEA, IE24 of 96.66%, and showed an anionic profile. The emulsion formed consisted of compact small and stable droplets (size 0.2–5 µm), stable at all temperatures, at pH 2 and 4, and 2% salinity, and showed an ability to remove 93.74% of diesel oil from sand. The displacement oil (ODA) showed 45.34 cm2 of dispersion (central point of the factorial design). The biomass obtained from Assay 4 was able to accumulate lipids of 0.425 g/g biomass (corresponding to 42.5%), which consisted of Palmitic acid (28.4%), Stearic acid (7.7%), Oleic acid (42.8%), Linoleic acid (19.0%), and γ-Linolenic acid (2.1%). The results showed the ability of C. lipopytica to produce both bioemulsifier and biodiesel using the metabolic conversion of waste soybean oil and corn steep liquor, which are economic renewable sources. PMID:27669227

  15. Biodiversity and distribution of Hypocrea/Trichoderma species in New Zealand

    Institute of Scientific and Technical Information of China (English)

    Sarah L Dodd; Alison Stewart

    2004-01-01

    @@ With increased imports of foreign microbes either as commercial biocontrol products or for the purposes of research, there is potentially an increased threat to indigenous beneficial microflora. In the present study, indigenous species of the fungal genus Hypocrea/Trichoderma are being used as a model system to determine the impact of foreign microbes on the native microflora of New Zealand. In order to protect such microflora, one has to first be aware of what is currently present and what sites, if any,are most vulnerable. A preliminary survey for the presence and diversity of species of Hypocrea/Trichoderma is currently underway in New Zealand and samples are being assessed from forest soils,agricultural soils, orchards, garden soils, sclerotia of various plant pathogens and pasture land. To date 238 isolates have been identified using both morphological characters and DNA sequence data from the ITS regions of the ribosomal gene cluster (ITS1 & ITS2) and, in some instances, sequence of the elongation factor gene (EF1-α) . Isolates were found to represent 16 known species plus three species as yet undescribed. In forest soils T. harzianum /T. inhamatum (31%) and T. viride (29%)followed by T. fertile (13%), were clearly the most abundant species and the remaining five species found in forests ( T. atroviride, T. koningii, T. aureoviride, H. cf. flavovirens anamorph and one unknown) each accounting for <8% of the total. Dominance by the species T. harzianum/inhamatum is consistent with studies done in South-East Asia, a mid-European primeval floodplainforest and Moscow. In contrast, when isolations were conducted with a bias for biocontrol capabilities it was found that the species T. atroviride (29%), T. koningii (17%), T. harzianum (15%)and T. viride (12%) dominated respectively. This survey is currently ongoing in New Zealand.Future studies will monitor indigenous species and strains following inoculation of specific microbes to assess the impact of the

  16. Waste Soybean Oil and Corn Steep Liquor as Economic Substrates for Bioemulsifier and Biodiesel Production by Candida lipolytica UCP 0998.

    Science.gov (United States)

    Souza, Adriana Ferreira; Rodriguez, Dayana M; Ribeaux, Daylin R; Luna, Marcos A C; Lima E Silva, Thayse A; Andrade, Rosileide F Silva; Gusmão, Norma B; Campos-Takaki, Galba M

    2016-09-23

    Almost all oleaginous microorganisms are available for biodiesel production, and for the mechanism of oil accumulation, which is what makes a microbial approach economically competitive. This study investigated the potential that the yeast Candida lipolytica UCP0988, in an anamorphous state, has to produce simultaneously a bioemulsifier and to accumulate lipids using inexpensive and alternative substrates. Cultivation was carried out using waste soybean oil and corn steep liquor in accordance with 2² experimental designs with 1% inoculums (10⁷ cells/mL). The bioemulsifier was produced in the cell-free metabolic liquid in the late exponential phase (96 h), at Assay 4 (corn steep liquor 5% and waste soybean oil 8%), with 6.704 UEA, IE24 of 96.66%, and showed an anionic profile. The emulsion formed consisted of compact small and stable droplets (size 0.2-5 µm), stable at all temperatures, at pH 2 and 4, and 2% salinity, and showed an ability to remove 93.74% of diesel oil from sand. The displacement oil (ODA) showed 45.34 cm² of dispersion (central point of the factorial design). The biomass obtained from Assay 4 was able to accumulate lipids of 0.425 g/g biomass (corresponding to 42.5%), which consisted of Palmitic acid (28.4%), Stearic acid (7.7%), Oleic acid (42.8%), Linoleic acid (19.0%), and γ-Linolenic acid (2.1%). The results showed the ability of C. lipopytica to produce both bioemulsifier and biodiesel using the metabolic conversion of waste soybean oil and corn steep liquor, which are economic renewable sources.

  17. Corallomycetella属及以C.jatrophae为模式建立新属Corallonectria(丛赤壳科,肉座菌目)%Revision of the genus Corallomycetella with Corallonectria gen.nov.for C.jatrophae (Nectriaceae, Hypocreales)

    Institute of Scientific and Technical Information of China (English)

    C.S.HERRERA; A.Y.ROSSMAN; G.J.SAMUELS; Christian LECHAT; P.CHAVERRI

    2013-01-01

    The genus Corallomycetella (Ascomycota,Sordariomycetes,Hypocreales,Nectriaceae) has been defined to include red nectrioid fungi associated with rhizomorphs in nature and culture.With the recent collection of an unusual specimen having striated ascospores,the genus was re-examined using this and previously obtained cultures.A multilocus tree was constructed based on three loci (ITS,mcm7,β-tubulin) to determine phylogenetic relationships.Our results indicate that Corallomycetella repens sensu lato forms two clades associated with biogeography.Corallomycetella repens sensu stricto is restricted to specimens from Asia while C.elegans is resurrected for specimens from Africa and America.Minute striations in the ascospores are an overlooked character in species of Corallomycetella.Corallomycetellajatrophae is related to Neonectria sensu lato and unrelated to C.repens and C.elegans; thus,a new genus,Corallonectria,is described to accommodate this species.Corallonectria is characterized by furfuraceous perithecia and synnematous fusarium-like anamorph.%对Corallomycetella属的概念进行了阐述,该属包括子实体为红色、在自然和培养条件下产生菌索的丛赤壳类真菌.根据对近期采集的标本的观察和多基因系统树分析的结果,广义的Corallomycetella repens形成2个分支,它们与生物地理因素相关联.狭义的Corallomycetella repens限于来自亚洲的标本,而C.elegans来自非洲和美洲.Corallomycetella属成熟的子囊孢子表面具有纤细条纹,此特征过去曾被忽略,C.jatrophae与广义的Neonectria属关系接近,而与C.repens和C.elegans关系较远;因而建立新属Corallonectria,其子囊壳表面细粉状,无性型为束丝结构并与镰孢菌相似.

  18. Thermal-structure coupled deformation in an optical-mechanical system for radiometric calibration of satellite IR remote sensor%卫星红外遥感器辐射定标光机系统热-结构耦合变形分析

    Institute of Scientific and Technical Information of China (English)

    肖庆生; 杨林华; 赵寿根

    2011-01-01

    The thermal deformation of a radiometric calibration optical-structure system under simulated space environments would cause a great damage to the imaging quality of the system, and reduce the precision of the calibration test eventually.In this paper, a finite element model of such a system is built.Based on the model, with the temperature values at nodes obtained in the radiometric calibration test for the satellite multi-spectral scanner, the distribution of the thermal-structure coupling deformation is calculated and analyzed.The results show that the thermal distortion of the optical bracket would cause rigid displacements of the primary mirror and the primary reflector,making them off the axis or acclivitous and the black body off the focus, and changing the focal distance of the system in a non-uniform steady-state Iow temperature condition.But the root-mean-square (RMS) values of deformation of the anamorphic mirrors are both less than one fortieth of the wave length, within the actual surface shape accuracy requirements of the optical system.%辐射定标光机系统在模拟空间环境下的热变形直接影响定标光学系统成像质量,并决定星载遥感器辐射定标试验精度.文章建立的辐射定标光机系统有限元模型,以某卫星多光谱扫描仪辐射定标试验中的实测温度变化作为温度载荷,计算和研究了该系统在真空低温环境下的热-结构耦合变形的分布情况和分布规律.结果表明:在非均匀稳态低温环境下,该系统光学支架热变形使主镜及主反射镜发生刚性位移,引起垂轴方向位移、倾斜,黑体的离焦和光学系统焦距变化;反射镜表面畸变RMS值均为1/40波长以下,可以满足实际光学系统的面形准确度要求.

  19. Validation and comparison of bend circulation velocity distribution formulas%弯道环流流速公式的验证与比较

    Institute of Scientific and Technical Information of China (English)

    李志威; 方春明; 邵佳

    2011-01-01

    弯道环流流速公式是弯道水力学理论研究的重要内容.给出了弯道环流流速公式的一般理论推导过程,归纳了国内外5种具有代表性的环流流速公式,即罗索夫斯基公式、张红武公式、Odgaard公式、孙东坡公式以及罗索夫斯基修正公式,并采用弯道水槽及模型资料予以验证和比较,同时对3种罗氏公式的近似式进行了验证.验证结果表明,罗氏公式的3种近似式中,只有丁君松的近似式是精度较高,其它两种均有较大偏差.5种代表性的环流流速公式,张红武公式的精度高和可靠性强,其次是罗氏公式和Odgaard公式,孙东坡公式与张红武的实测资料存在一定偏差,而罗索夫斯基修正公式的形式不尽合理,在近底区域与实测资料分歧较大,甚至与定性规律相悖.%The velocity distribution formula of bend secondary flow is still an important content of theoretical research of meandering rivers. The general deduction process of the circulation velocity formula is presented. This paper summarizes five representative circulation velocity formulas, namely Rozovskii's formula, Zhang Honghu's formula, Odgaard's formula, Sun Dongpo's formula and modified Rozovskii formula. The Rozovskii's and Zhang Hongwu's experimental data are used to validate and compare the five formulas, including three approximate expressions of Rozovskii's formula. The validation results show that the precision of Ding Junsong's approximate expressions is higher, and the deviation of other two experssions is larger. In five representative circulation velocity formulas, the precision and reliability of Zhang's formula is the best, followed by Rozovskii's and Odgaard's formulas, and Sun's formula is poorly accorded with Zhang Hongwu's experimental data. The format of approximate expressions of modified Rozovskiis formula may be unreasonable, and especially in near bed zone it is apparently anamorphic and inconsistent with the qualitative

  20. Optical design of the NASA-NSF extreme precision Doppler spectrograph concept "WISDOM"

    Science.gov (United States)

    Barnes, Stuart I.; Fżrész, Gábor; Simcoe, Robert A.; Shectman, Stephen A.; Woods, Deborah F.

    2016-08-01

    The WISDOM instrument concept was developed at MIT as part of a NASA-NSF funded study to equip the 3.5m WIYN telescope with an extremely precise radial velocity spectrometer. The spectrograph employs an asymmetric white pupil optical design, where the instrument is split into two nearly identical "Short" (380 to 750 nm) and "Long"" (750 to 1300 nm) wavelength channels. The echelle grating and beam sizes are R3.75/125mm and R6/80mm in the short and long channels respectively. Together with the pupil slicer, and octagonal to rectangular fibre coupling, this permits resolving powers over R = 120k with a 1.2" diameter fibre on the sky. A factor of two reduction in the focal length between the main collimator OAP and the transfer collimator ensures a very compact instrument, with a small white pupil footprint, thereby enabling small cross-dispersing and camera elements. A dichroic is used near the white pupil to split each of the long and short channels into two, so that the final spectrograph has 4 channels; namely "Blue," "Green," "Red" and "NIR." Each of these channels has an anamorphic VPH grism for cross-dispersion, and a fully dioptric all-spherical camera objective. The spectral footprints cover 4k×4k and 6k×6k CCDs with 15 µm pixels in the short "Blue" and "Green" wavelength channels, respectively. A 4k×4k CCD with 15 μm pixels is used in the long "Red" channel, with a HgCdTe 1.7 μm cutoff 4k×4k detector with 10um pixels is to be used in the long "NIR" channel. The white pupil relay includes a Mangin mirror very close to the intermediate focus to correct the white pupil relay Petzval curvature before it is swept into a cylinder by the cross-dispersers. This design decision allows each of the dioptric cameras to be fully optimised and tested independently of the rest of the spectrograph. The baseline design for the cameras also ensures that the highest possible (diffraction limited) image quality is achieved across all wavelengths, while also ensuring

  1. Preparation and Characterization of An Alkaline Solid PVA-PC-KOH-H20 Electrolyte%PVA-PC-KOH-H20碱性固体聚合物电解质的制备和表征

    Institute of Scientific and Technical Information of China (English)

    李月丽; 刘建; 王松林; 张金标

    2012-01-01

    以PVA—KOH—H20体系碱性固体聚合物电解质为基质,添加适量碳酸丙烯酯(PC)做增塑剂来提高性能。利用X一射线衍射分析、红外光谱技术分析、交流阻抗谱和循环伏安法等对样品进行了表征。研究结果表明,聚合物电解质以无定形态为主,含极少量晶相,PC的适量添加可以降低电解质膜的结晶度增大无定形区域,从而提高室温离子电导率,当PVA:PC=3:I(质量比)复合电解质膜的室温电导率最高可达4.41x10-2S/cm,同时电化学稳定窗口也满足使用要求(相对于不锈钢电极,其电压稳定窗口为3.5v)。%A composite alkaline solid polymer electrolyte(ASPE) based on PVA-KOH-H20 were prepared using polyearbonate (PC) as plasficizem. The properties of PVA based composite alkaline polymer electrolytes were studied by X-ray diffraction (XRD), Infrared spectroscopy analysis (IR),cyelie voltammetry and AC impedanee methods. The experimental results indicated that ASPE films showed anamorphous phase with farthing crystal phase, the addition of PC redueed the crystallinity of ASPE to make amorphous region augmented. The ionic eonductivity of the electrolyte was improved with the content of PC inereased appropriately, the electrolyte's ionic conductivity is up to a maximum(4.41xl0-2 S/em)when the weight ratio PVA/PC is equal to 3, and the electrochemical potential stability window was 3.5V for SS/ASPE/SS ( SS for stainless steel) that can meet the ecmioment' demands for their electrolytes.

  2. The diversity of aquatic Hyphomycetes in South America A diversidade dos Hyphomycetes aquáticos nas águas continentais da América do Sul

    Directory of Open Access Journals (Sweden)

    Iracema Helena Schoenlein-Crusius

    2003-07-01

    Full Text Available Aquatic Hyphomycetes, also named Ingoldian or freshwater fungi, constitute a group of anamorphic fungi that are typically aquatic, producing tetraradiate, sigmoid or spherical conidia on submerged plant debris (leaf litter, petioles, bark, etc.. Mainly occurring in lotic systems, these fungi are considered to be one of the most active groups of organisms in the decomposition of leaf litter, and play a crucial role in the trophic chain. In South America, aquatic Hyphomycetes are mentioned for Argentina, Brazil, Chile, Ecuador, Peru and Venezuela, totalizing the report of about 90 species. Almost all studies are taxonomical, some with proper drawings and complete descriptions, but no keys have been provided yet, nor there is a specific culture collection for preserved strains. The published papers are still sporadic and dispersed, emphasizing a great need to improve the knowledge of the diversity of South American aquatic Hyphomycetes. The present review contents the check list of reported species until now, and has the aim to encourage the research concerned with aquatic Hyphomycetes in non explored regions of the continent.Os Hyphomycetes aquáticos, também denominados fungos "Ingoldeanos", constituem grupo de fungos anamórficos tipicamente aquáticos, que produzem conídios tetrarradiados, sigmóides ou esféricos sobre substratos vegetais submersos (folhedo, pecíolos, cortiça, etc.. Ocorrendo principalmente em sistemas lóticos, estes fungos são considerados como um dos grupos de organismos mais ativos na decomposição de folhedo, assumindo papel crucial na cadeia trófica. Na América do Sul os Hyphomycetes aquáticos são mencionados para a Argentina, Brasil, Chile, Equador, Peru e Venezuela, totalizando a citação de aproximadamente 90 espécies. Quase todos os estudos são taxonômicos, com ilustrações adequadas e descrições completas, porém ainda não foram elaboradas chaves sistemáticas ou coleções de culturas de linhagens

  3. 桉树焦枯病菌(Calonectria pseudoreteaudii)生物学特性测定%Biological characteristics of Calonectria pseudoreteaudii associated with Cylindrocladium leaf blight

    Institute of Scientific and Technical Information of China (English)

    陈全助; 陈慧洁; 郭文硕; 叶小真; 沈金清

    2014-01-01

    丽赤壳属多数种是桉树焦枯病( Cylindrocladium leaf blight)重要致病菌,掌握病原菌生物学特性有助于从病原角度了解病害发生发展,科学指导防治。对桉树焦枯病致病菌株Calonectria pseudoreteaudii生物学特性进行测定。结果表明:该菌株菌丝生长以燕麦片琼脂培养基生长最快,最适温度为24-26℃,最适pH值为7.0,而光照条件不影响菌丝生长;菌株产孢最适温度为25℃,最适pH值为6.0,以光照、PDA培养基产孢量较高;分生孢子萌发与相对湿度成正相关,最适温度为28℃,最适pH值为6.0,黑暗有助于孢子萌发。%Absrt act:Calonectria spp., particularly in their Cylindrocladium anamorph form, are well-known pathogens associated with Cylin-drocladium leaf blight.For the purpose of understanding the biological characteristics of Ca.pseudoreteaudii YA5j2 and guiding how to control this disease, biological characteristics of this isolate were determined.The optimal conditions for mycelium growth were oatmeal agar medium with pH 7.0 cultivated at 24-26℃, and illuminance had no significant effect on hyphae growth.The suitable conditions for spore production were potato dextrose agar medium with pH 6.0 cultivated at 25℃in the light.Conidium germination had a positive correlation with relative humidity, and conidium under the circumstance with high humidity, pH 6.0, temperature at 28 ℃, and without illumination contributed to germination.

  4. Contribución a la identificación de esporas del Reino Fungi en la atmósfera de La Plata, Argentina

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    Daniela S. Nitiu

    2010-12-01

    belonging to the Phylum Zygomycota, Basidiomycota and Ascomycota and their anamorphs, assigned to generic level. Characters that define such associations are: Absidia Group, hyaline amerospores; Cortinarius Group, pigmented amerospores; Didymella Group, hyalines or slightly colored didymospores; Didymosphaeria Group, pigmented didymospores and didymoconidia; Leptosphaeria Group, hyaline to pigmented phragmospores and Helminthosporium Group, hyaline to pigmented distoseptated phragmoconidia. The aim of this work is to give a tool to facilitate the task of data processing by providing new qualitative elements to prior classifications and contributing to the complex problem of identification of fungal spores presents in atmosphere.

  5. A case of apple moldy-core disease caused by Discostroma fuscellum in Gansu Province%甘肃省一例苹果霉心病病原鉴定

    Institute of Scientific and Technical Information of China (English)

    白滨; 文朝慧; 何苏琴

    2012-01-01

    [目的]对甘肃省天水市苹果霉心病病果中分离到的真菌进行病原鉴定.[方法]通过Koch's法则证病,采用形态学和分子生物学方法对病菌进行种类鉴定.[结果]从甘肃省天水市苹果霉心病病果中分离得到一株淡灰褐色真菌,用该菌的分生孢子悬浮液接种苹果果实,可引起与自然发病相同的苹果霉心病症状.该菌的分生孢子具有不同的形态:产生于分生孢子盘上的分生孢子具3个隔膜,极少数4-5个隔膜,纺锤形或长椭圆形,淡褐色至褐色,基细胞色稍淡,附属丝缺,孢子大小为(12.95-20.42) μm×(4.98-7.97) μm[av.(16.75±1.89) μm×(6.47±0.86) μm];产生于丝状分生孢子梗及分生孢子堆上的分生孢子具2-9个隔膜,纺锤形、棒状或蠕虫状,初始色淡,渐呈褐色,(12.45-59.76) μm×(4.98-11.21) μm [av.(30.10±11.16) μm×(7.26±l.28) μm].[结论]经形态学和分子生物学鉴定(GenBank登录号JF320818),将该病菌鉴定为Discostroma fuscellum (Berk.&Broome)Huhndorf.这是Discostroma fuscellum引起苹果霉心病在我国的首次报道.%[Objective] Identification of the pathogen of moldy-core disease of apple in Gansu Province.[Methods] The pathogenicity of fungal isolate was confirmed by Koch's rule, and identification of the pathogen was performed according to anamorphic morphological characteristics and ITS rDNA sequence analysis result.[Results] A fungus isolated from moldy-core disease of apple in Tianshui County, Gansu Province, in January 2009.The fungus caused the same symptom compared to the natural mouldy-core disease while injected inoculation through the calyx tube of apple fruits.The fungus produced conidia with different morphological types: Conidia formed on acervuli (black conidiomata developed on mycelial mat in potato sucrose liquid medium after cultured 7 months at 3 ℃-7 ℃), (12.95 -20.42) μm× (4.98-7.97)μm [av.(16.75±1.89) um×(6.47±0.86) μm], 3 septa, rarely 4-5 septa, fusiform or

  6. Identification and characterization of sesame southern blight pathogen%芝麻白绢病病原菌的分离鉴定及其生物学特性

    Institute of Scientific and Technical Information of China (English)

    王雅; 黄思良; 何朋朋; 牛小瑞; 黎起秦

    2013-01-01

    为了明确芝麻白绢病的病原菌,采用常规组织分离法分离病原菌,依据柯赫法则、形态特征及核糖体基因内转录间隔区(rDNA-ITS)序列进行鉴定,同时检测其部分生物学特性.结果表明:引起芝麻白绢病的病原菌为罗氏阿太菌Athelia rolfsii(无性世代:齐整小核菌Sclerotium rolfsii);该菌适宜生长温度为22 ~ 34C,最适生长温度为31℃;在pH4.0 ~ 9.0范围内均可生长,以pH6.5 ~ 7.0生长最好,表明微酸性至中性环境最有利于菌体生长;该菌虽能利用供试的13种碳源和8种氮源进行营养生长,但在以可溶性淀粉、蔗糖、葡萄糖、麦芽糖、L-阿拉伯糖和菊糖分别作为唯一碳源并配以硝酸盐为氮源的生长条件下不产生菌核,而在以葡萄糖为碳源并配以铵盐为氮源的生长条件下可产生菌核.与合成培养基相比,A.rolfsii在天然培养基上生长更好,可形成更多、更大的菌核.%To identify and characterize the pathogen causing sesame southern blight, the pathogen was isolated and its pathogenicity to sesame plants was confirmed based on Koch's postulates. Pathogen identification was carried out based on morphological characteristics and ribosomal DNA internal transcribed spacer ( rDNA - ITS) sequences. Partial biological characteristics of the pathogen were tested in vitro. The pathogen causing sesame southern blight was identified as Athelia rolfsii (anamorph: Sclerotium rolfsii). The temperatures suitable for its growth were 22 to 34℃ with the optimum temperature at 31℃. A. rolfsii grew well at a pH range of 4.0 to 9. 0 with the optimum pH at 6. 5 to 7. 0, indicating that slight acidic to neutral environment was more suitable for vegetative growth of the pathogen. The pathogen could utilize all of the 13 tested carbon sources for its vegetative growth. However, no sclerotia were developed on the media containing each of the seven substances (soluble starch, saccharose, glucose, maltose

  7. Disease symptoms and their frequency of occurrence in sycamores (Acer pseudoplatanus L. in the Rymanów Forest Unit stands

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    Tadeusz Kowalski

    2012-12-01

    local unhealed cankers and widespread bark cankers, sometimes taking the form of a sector reaching the part near the pith, and greyish - green or greenish - brown wood discolorations in the form of numerous stains, especially in the trunk periphery part. On the trunks of 184 (14.2% sycamores, perithecia of Nectria coccinea were present. They formed in the area of cankers on bark and exposed wood alike. Fruiting bodies of Nectria cinnabarina, Eutypa acharii, Melanomma pulvis-pyrius, conidiomata of Cytospora ambiens, Aposphaeria cf. pulviscula and conidiomata of Stegonsporium pyriforme occurred sporadically. From wood, the following were isolated predominantly: Basidiomycetes sp. 1, Chalara sp. 1, Cadophora fastigiata, Nectria cinnabarina and Cytospora ambiens. Chalara sp.1, with its morphological features, best matched the anamorph of Ceratocystis coerulescens sensu lato.

  8. Primer reporte de susceptibilidad del clon de caucho natural FX-3864 a Microcyclus ulei en la altillanura colombiana

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    Ibonne Aidee García

    2012-05-01

    Full Text Available First report of susceptibility of natural rubber clone FX-3864 a Microcyclus ulei en la altillanuera colombiana ResumenEl mal suramericano de las hojas (SALB, enfermedad endémica del caucho (Hevea brasiliensis, es causado por Microcyclus ulei (forma imperfecta Fusicladium macrosporum y constituye el principal limitante del cultivo en América, área donde el microorganismo patógeno es endémico. En forma semejante al de otros cultivos agrícolas, el manejo de esta enfermedad está condicionado a la disponibilidad de resistencia genética en el hospedero. En razón de su productividad y condición de resistencia genética, el clon FX 3864 ha sido ampliamente plantado en zonas con diferente potencialidad epidémica a la incidencia del SALB en Colombia, particularmente las denominadas de “no escape” a la enfermedad. Durante el 2010, plantaciones con el clon FX 3864 en fase productiva presentaron síntomas de SALB en zonas de escape ubicadas en la altillanura colombiana (departamento del Meta. En parcelas trampa ubicadas en áreas aledañas a los cultivos se estableció que la severidad promedio de la enfermedad alcanzó niveles de 5,78% en este clon. Verificada la causalidad de la enfermedad mediante observaciones al microscopio se procedió a confirmar el origen del material sobre el cual se desarrollaban las lesiones, utilizando marcadores moleculares (4 microsatélites específicos. Los resultados de la prueba permitieron confirmar la susceptibilidad del hasta hace poco resistente clon FX 3864 al SALB en Colombia. Se sugiere tomar en consideración la nueva condición de este clon y, en concordancia, reorientar los programas de fomento del cultivo advirtiendo a los agricultores sobre los riesgos potenciales de ocurrencia de la enfermedad en las nuevas áreas programadas. Palabras clave: SALB, Hevea brasiliensis, Fusicladium macrosporum, cultivo de caucho. AbstractSouth American Leaf Blight (SALB, caused by Microcyclus ulei (anamorph

  9. A Study on Fungal Diversity in Tobacco Rhizosphere Soil in Shandong Province%山东省烟草根际土壤真菌多样性研究

    Institute of Scientific and Technical Information of China (English)

    王娜; 吕国忠; 孙晓东; 慕东艳; 赵志慧; 王凤龙

    2012-01-01

    In order six areas of tobacco to explore the relationship of tobacco rhizosphere soil fungi and diseases, we selected fields in Shandong province to conduct the investigation of rhizosphere soil fungal diversity. In 2010 summer, 122 soil samples were collected and investigated by means of soil dilution plate method, totally 536 fungal isolates were obtained. From them, 79 fungal species belonging to 22 genera were morphologically identified, including 6 species belonging to 4 genera of Zygomycota, 1 species belonging to one genus of Ascomycota, and 72 species belonging to 17 genera of anamorphic fungi. The fungal population analysis indicates that Penicillium, Trichoderma, Aspergillus and Fusarium were the dom- inant fungal groups in tobacco-growing soil, which account for 22.39%, 13.22%, 12.69% and 9.88% respectively. The fungal diversities in tobacco rhizosphere soil in Shandong province were significantly different in the six soil-sampling regions. Zhucheng was the highest in Shannon diversity index (H' = 2.066 6), Pielou evenness index ( J = 0. 689 8) and the highest in Margalef richness index ( R = 3.730 1). It is concluded that fungi diversity is plentiful in tobacco rhizospheric soil and the mycobiota are different in various tobacco growing areas. More fungal species in tobacco rhizosphere soil are of potential significance in biological control of tobacco soil-borne diseases.%为了有助于研究烟草根际土壤真菌与根茎病害发生程度的相互关系,文中对采自山东省6个地区的122份烟草根际土壤样品进行了真菌的分离和培养,采用形态学方法进行鉴定,并分析了菌群的多样性组成。从山东烟草根际土壤中分离和鉴定出真菌22属79种,其中接合菌门4属6种,子囊菌门1属1种,无性型真菌17属72种。优势真菌种群为青霉属(Penieillium)、木霉属(Trichoderma)、镰孢菌属(Fusarium)和曲霉属(Aspergillus),所占分离真菌

  10. Ribosomal DNA sequence divergence and group I introns within the Leucostoma species L. cinctum, L. persoonii, and L. parapersoonii sp. nov., ascomycetes that cause Cytospora canker of fruit trees.

    Science.gov (United States)

    Adams, Gerard C; Surve-Iyer, Rupa S; Iezzoni, Amy F

    2002-01-01

    Leucostoma species that are the causal agents of Cytospora canker of stone and pome fruit trees were studied in detail. DNA sequence of the internal transcribed spacer regions and the 5.8S of the nuclear ribosomal DNA operon (ITS rDNA) supplied sufficient characters to assess the phylogenetic relationships among species of Leucostoma, Valsa, Valsella, and related anamorphs in Cytospora. Parsimony analysis of the aligned sequence divided Cytospora isolates from fruit trees into clades that generally agreed with the morphological species concepts, and with some of the phenetic groupings (PG 1-6) identified previously by isozyme analysis and cultural characteristics. Phylogenetic analysis inferred that isolates of L. persoonii formed two well-resolved clades distinct from isolates of L. cinctum. Phylogenetic analysis of the ITS rDNA, isozyme analysis, and cultural characteristics supported the inference that L. persoonii groups PG 2 and PG 3 were populations of a new species apparently more genetically different from L. persoonii PG 1 than from isolates representative of L. massariana, L. niveum, L. translucens, and Valsella melastoma. The new species, L. parapersoonii, was described. A diverse collection of isolates of L. cinctum, L. persoonii, and L. parapersoonii were examined for genetic variation using restriction fragment length polymorphism (RFLP) analysis of the ITS rDNA and the five prime end of the large subunit of the rDNA (LSU rDNA). HinfI and HpaII endonucleases were each useful in dividing the Leucostoma isolates into RFLP profiles corresponding to the isozyme phenetic groups, PG 1-6. RFLP analysis was more effective than isozyme analysis in uncovering variation among isolates of L. persoonii PG 1, but less effective within L. cinctum populations. Isolates representative of seven of the L. persoonii formae speciales proposed by G. Défago in 1935 were found to be genetically diverse isolates of PG 1. Two large insertions, 415 and 309 nucleotides long, in

  11. EFECTO DE BORDE SOBRE EL PROCESO DE DESCOMPOSICIÓN DE HOJARASCA EN BOSQUE NUBLADO Edge Effect on the Decomposition Process of Leaf Litter in Cloud Forest

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    MAURICIO ROMERO-TORRES

    2011-08-01

    effect on leaf litter decomposition and its control factors, two fragments of cloud forest in the southwest region of the Bogotá Savannah were selected. Within each, two 64 m long transects were laid out bearing east and west from edge to center respectively, a leaf litter decomposition experiment of a 90 to 180 day duration was set up at seven distances measured from the starting point of each transect. The percentage of leaf litter moisture and decomposition, vegetation density, anamorphic fungi density and carbon:nitrogen ratio were estimated at each point. The maximum distance of the edge effect on the decomposition was determined, and the interaction between orientation, distance and the regulating factors of the decomposition process were ascertained. The results established an effect of the cardinal orientation of the edge on the decomposition and its regulating factors. Marked edge effects on leaf litter moisture extending up to 7 m and up to 30 m on vegetation density were displayedin Eastern border areas. In forest areas, decomposition was regulated by leaf litter moisture and its C:N ratio. The limited penetration of edge effect suggests minor effects regarding nutrient cycles and provides justification and additional value to the use of small fragments.

  12. Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.

    Science.gov (United States)

    Wibberg, Daniel; Jelonek, Lukas; Rupp, Oliver; Hennig, Magdalena; Eikmeyer, Felix; Goesmann, Alexander; Hartmann, Anton; Borriss, Rainer; Grosch, Rita; Pühler, Alfred; Schlüter, Andreas

    2013-08-20

    Anastomosis group AG1-IB isolates of the anamorphic basidiomycetous fungus Rhizoctonia solani Kühn affect various agricultural and horticultural important crops including bean, rice, soybean, figs, hortensia, cabbage and lettuce. To gain insights into the genome structure and content, the first draft genome sequence of R. solani AG1-IB isolate 7/3/14 was established. Four complete runs on the Genome Sequencer (GS) FLX platform (Roche Applied Science) yielding approx. a 25-fold coverage of the R. solani genome were accomplished. Assembly of the sequence reads by means of the gsAssembler software version 2.6 applying the heterozygotic mode resulted in numerous contigs and scaffolds and a predicted size of 87.1 Mb for the diploid status of the genome. 'Contig-length vs. read-count' analysis revealed that the assembled contigs can be classified into five different groups. Detailed BLAST-analysis revealed that most contigs of group II feature high-scoring matches to other contigs of the same group suggesting that distinguishable allelic variants exist for many genes. Due to the supposed diploid and heterokaryotic nature of R. solani AG1-IB 7/3/14, this result has been anticipated. However, the heterokaryotic character of the isolate is not really supported by sequencing data obtained for the isolate R. solani AG1-IB 7/3/14. Coverage of group III contigs is twice as high as for group II contigs which can also be explained by the diploid status of the genome and indistinguishable alleles on homologous chromosomes. Assembly of sequence data led to the identification of the rRNA unit (group V contigs) and the mitochondrial (mt) genome (group IV contigs) which is a circular molecule of 162,751 bp in size featuring a GC-content of 36.4%. The R. solani 7/3/14 mt-genome is one of the largest fungal mitochondrial genomes known to date. Its large size essentially is due to the presence of numerous non-conserved hypothetical ORFs and introns. Gene prediction for the R. solani AG1

  13. The black rot disease of Hedera nepalensis and its pathogen identification%中华常春藤黑腐病及其病原菌鉴定

    Institute of Scientific and Technical Information of China (English)

    许凤仙; 胡小倩; 马杰; 楼晓明; 楼兵干

    2012-01-01

    . The strain was isolated from the boundary between the diseased and healthy part by using tissue isolation technique. The morphological observations showed that the conidia wall was thin, non-septate, spindle-shaped to narrow oval, and the size was (18 -25) μm x (4-5) μm, average of 19. 3 μm× 4. 7 μm. The ascus had double wall,eight ascospores in each ascus, ascospores monospores, colorless, transparent, smooth-walled, and the size was (19 - 28 ) μm × ( 7 - 9 )μm, average of 22. 3 μm × 7. 5μm. The strain rDNA ITS sequence is 557 bp. The isolated strain was identified as Botryosphaeria dothideu de Not (anamorph is Fusicoccum aesvuli Corda) based on its morphological characteristics, pathogenicity tests and rDNA ITS sequence analyses.

  14. Insect pathogens as biological control agents: Back to the future.

    Science.gov (United States)

    Lacey, L A; Grzywacz, D; Shapiro-Ilan, D I; Frutos, R; Brownbridge, M; Goettel, M S

    2015-11-01

    combine the advantages of chemical pesticides and MCAs: they are fast acting, easy to produce at a relatively low cost, easy to formulate, have a long shelf life and allow delivery using conventional application equipment and systemics (i.e. in transgenic plants). Unlike broad spectrum chemical pesticides, B. thuringiensis toxins are selective and negative environmental impact is very limited. Of the several commercially produced MCAs, B. thuringiensis (Bt) has more than 50% of market share. Extensive research, particularly on the molecular mode of action of Bt toxins, has been conducted over the past two decades. The Bt genes used in insect-resistant transgenic crops belong to the Cry and vegetative insecticidal protein families of toxins. Bt has been highly efficacious in pest management of corn and cotton, drastically reducing the amount of broad spectrum chemical insecticides used while being safe for consumers and non-target organisms. Despite successes, the adoption of Bt crops has not been without controversy. Although there is a lack of scientific evidence regarding their detrimental effects, this controversy has created the widespread perception in some quarters that Bt crops are dangerous for the environment. In addition to discovery of more efficacious isolates and toxins, an increase in the use of Bt products and transgenes will rely on innovations in formulation, better delivery systems and ultimately, wider public acceptance of transgenic plants expressing insect-specific Bt toxins. Fungi are ubiquitous natural entomopathogens that often cause epizootics in host insects and possess many desirable traits that favor their development as MCAs. Presently, commercialized microbial pesticides based on entomopathogenic fungi largely occupy niche markets. A variety of molecular tools and technologies have recently allowed reclassification of numerous species based on phylogeny, as well as matching anamorphs (asexual forms) and teleomorphs (sexual forms) of several

  15. Antifungal susceptibilities of 44 isolates of Trichophyton mentagrophytes isolates evaluated with CLSI M38-A2 scheme%应用CLSI M38-A2方案测定须癣毛癣菌对抗真菌药物敏感性

    Institute of Scientific and Technical Information of China (English)

    胡小平; 万喆; 李若瑜

    2011-01-01

    目的:对我国代表地区须癣毛癣菌临床分离株作抗真菌药物敏感性测定,进一步验证CLSI的M38-A2方案.方法:选取我国南北方8个省市地区经表型和分子生物学鉴定的趾间型毛癣菌38株和苯海姆节皮菌6株,采用M38-A2方案测定氟康唑、伊曲康唑、伏立康唑、特比萘芬、灰黄霉素、联苯苄唑、环吡酮胺和阿莫罗芬等8种常见抗真菌药物的最小抑菌浓度(minimal inhibitory concentration,MIC).结果:氟康唑、伊曲康唑、伏立康唑、特比萘芬、灰黄霉素、联苯苄唑、环吡酮胺和阿莫罗芬对趾间型毛癣菌株的MIC值(μg/mL)范围分别为0.25-32、0.0312-1、0.0156-0.0625、0.000937-0.00781、0.0625-1、0.0312-2、1-2、0.00781-0.0625;对苯海姆节皮菌株的MIC值(μg/mL)范围分别为≥64、2、0.25-0.5、0.000937-0.00381、1、2-4、1-2、0.0312-0.0625.不同抗真菌药物对趾间型毛癣菌及苯海姆节皮菌的药敏有明显差别(P<0.001);趾间型毛癣菌和苯海姆节皮菌对伊曲康唑、灰黄霉素、环吡酮胺、伏立康唑和氟康唑的药敏差异有统计学意义,对特比萘芬、阿莫罗芬和联苯苄唑的药敏差异无统计学意义.结论:趾间型毛癣菌和苯海姆节皮菌之间对伊曲康唑、灰黄霉素、环吡酮胺、伏立康唑和氟康唑的药敏有明显差异.M38-A2方案有较好的重复性和稳定性,适合用来体外测定须癣毛癣菌对抗真菌药物的敏感性.%Objective To determine the susceptibilities of Trichophyton mentagrophytes strains and to evaluate the M38-A2 scheme of CLSI. Methods Thirty-eight isolates of Trichophyton interdigitale ( T. interdigitale ) and 6 isolates of Trichophyton anamorph of A. benhamiae strains from 8 different regions of China were included and the MICs to fluconazol ( FLU ), itraconazole (ITR), voriconazole ( VIR), terbinafine ( TER), griseofulvin (GRI), ciclopiroxolamine ( CIC ), bifonazole (BIF), and amorofine (AMO) were determined by M38-A2

  16. High molecular diversity of the fungus Guignardia citricarpa and Guignardia mangiferae and new primers for the diagnosis of the citrus black spot

    Directory of Open Access Journals (Sweden)

    Danyelle Stringari

    2009-10-01

    Full Text Available RAPD markers were used to investigate the distribution of genetic variability among a group of Guignardia citricarpa, G. mangiferae, and Phyllosticta spinarum isolates obtained from several hosts in Brazil, Argentina, Mexico, Costa Rica, Thailand, Japan, United States and South Africa. Pathogenic isolates G. citricarpa Kiely (anamorph form P. citricarpa McAlp Van Der Aa are the etiological agent of the Citrus Black Spot (CBS, a disease that affects several citric plants and causes substantial injuries to the appearance of their fruits, thus preventing their export. Several previous studies have demonstrated the existence of an endophytic species with high morphological similarity to the causal agent of CBS that could remain latent in the same hosts. Consequently, the identification of the plants and fruits free from the causal agent of the disease is severely hampered. The RAPD analysis showed a clear discrimination among the pathogenic isolates of G. citricarpa and endophytic isolates (G. mangiferae and P. spinarum. In addition, a Principal Coordinate Analysis (PCO based on a matrix of genetic similarity estimated by the RAPD markers showed four clusters, irrespective of their host or geographical origin. An Analysis of Molecular Variance (AMOVA indicated that 62.8% of the genetic variation was found between the populations (G. citricarpa, G. mangiferae, P. spinarum and Phyllosticta sp.. Substantial variation was found in the populations (37.2%. Exclusive RAPD markers of isolates of G. citricarpa were cloned, sequenced and used to obtain SCARS (Sequence Characterized Amplified Regions, which allowed the development of new specific primers for the identification of G. citricarpa PCR (Polymerase Chain Reaction analysis using a pair of primers specific to pathogenic isolates corroborating the groupings obtained by the RAPD markers, underscoring its efficiency in the identification of the causal agent of CBS.Marcadores de RAPD foram utilizados para

  17. A baseline analysis of the distribution, host-range, and severity of the rust Puccinia Psidii in the Hawaiian islands, 2005-2010

    Science.gov (United States)

    Anderson, Robert C.

    2012-01-01

    westward. Although possibly present earlier, P. psidii was found in California in November 2005 in a nursery in San Diego County on Myrtus communis and documented by a report in a nursery newsletter (Mellano 2006). Puccinia psidii was first found in Hawai`i on a young plant of `ōhi`a (Metrosideros polymorpha) in April 2005, in a nursery on the island of O`ahu (Killgore and Heu 2005; Uchida et al. 2006). The fungus subsequently spread to most islands of the Hawaiian chain, infecting `ōhi`a and other myrtaceous hosts (Hauff 2006, Anderson et al. 2007). P. psidii was first found in Japan in May 2007 on cultivated `ōhi`a (Kawanishi et al. 2009). Most recently, a rust identified as Uredo rangelii was discovered in April 2010 in New South Wales, Australia (Carnegie et al. 2010). This rust is closely related to Puccinia psidii and is part of the guava rust complex described by Simpson et al. (2006). Although treated as a separate species by Simpson et al. (2006), many authors now consider U. rangelii a synonym for U. psidii, which is the anamorph (asexual stage) of P. psidii, and therefore, the same species (Glen et al. 2007, Carnegie et al. 2010). Because of the large diversity of native Myrtaceae present in Australia, the number of Myrtaceae hosts attacked by species of the guava rust complex will likely grow now that U. rangelii has arrived and is spreading in the country. As of this writing (June 2011), 94 species of Myrtaceae have been identified as hosts of U. rangelii in the states of New South Wales and Queensland. Damage is severe on nearly one-third of the species affected, and 16 of these species are threatened or endangered native species (Secretary of Australia, May 2011). The presence of Puccinia psidii in Hawai`i is particularly alarming for at least two reasons: (1) M. polymorpha is the dominant overstory tree of the native forest, and (2) P. psidii is now established in the Pacific region, where numerous Myrtaceae species are native. Native ecosystems in Hawai