WorldWideScience

Sample records for anamorphs

  1. Nonparaxial anamorphic diffractive lenses

    International Nuclear Information System (INIS)

    Applications of anamorphic diffractive lenses, or in other words elliptical zone plates, are growing in number and diversity. Following this progress, the manufacturing methods of anamorphic diffractive lenses are also a subject of continuous improvement. On the other hand, their design is still based mainly on the paraxial approximation. In the present paper nonparaxial elliptical zone plates are presented and their difference from the paraxial version, termed as the elliptical aberration is shown. A comparison of their focusing quality was performed based on results of numerical modelling as well as experiments. (paper)

  2. Phylogeny and systematics of the anamorphic, entomopathogenic genus Beauveria

    Science.gov (United States)

    Beauveria is a cosmopolitan anamorph genus of arthropod pathogens that includes the agronomically important species B. bassiana and B. brongniartii, which are used as mycoinsecticides for the biological control of pest insects. Recent phylogenetic evidence demonstrates that Beauveria is monophyletic...

  3. Microjet printing of anamorphic microlens arrays

    Science.gov (United States)

    Cox, Weldon R.; Chen, Ting; Ussery, Daryl W.; Hayes, Donald J.; Hoenigman, R. F.; MacFarlane, Duncan L.; Rabinovich, Emmanuil M.

    1996-03-01

    The microjet printing method of micro-optical element fabrication is being used to make arrays of high-performance hemi-elliptical and hemi-cylindrical microlenses for potential use in applications such as collimation of edge-emitting diode laser array beams. The printing method enables both the fabrication of very fast (e.g., f/0.75) microlenses and the potential for reducing costs and increasing flexibility in micro-optics manufacture. The process for fabricating anamorphic microlenses, including those of square or rectangular shape, involves the dispensing and placing of precisely sized microdroplets of optical material onto optical substrates, and then controlling their coalescence and solidification. By varying the number, diameter and spacing of adjacent microdroplets of optical materials deposited at elevated temperatures onto heated substrate, both the dimensional aspect ratios and the ratio of `fast'- to-`slow' focal lengths of a printed hemi-elliptical microlens may be varied over a very wide range. Arrays of hemi-elliptical and hemi-cylindrical microlenses on the order of 100 - 300 micrometers in width and 150 micrometers to 20 mm long, with focal length ratios (fast/slow) from 1 (circular) to 0 (cylindrical), have been printed. A model for predicting printed hemi-elliptical microlens focal lengths from printed lenslet geometry is illustrated, along with an interferometric method of detecting lenslet defects and aberrations.

  4. Cordyceps bassiana and production of stromata in vitro showing Beauveria anamorph in Korea

    Science.gov (United States)

    A Cordyceps species was found with Beauveria anamorph state on larval insect cadavers on Obong Mountsin in Gangwon Pronvince, Republic of Korea. Cultures from discharged ascospores formed an anamorph identifiable as Beauveria bassiana. This teleomorph-anamorph connection was also confirmed by the in...

  5. Femtosecond micromachining in transparent bulk materials using an anamorphic lens.

    Science.gov (United States)

    Desautels, G Logan; Brewer, Chris D; Walker, Mark A; Juhl, Shane B; Finet, Marc A; Powers, Peter E

    2007-10-01

    A unique anamorphic lens design was applied to a circular 780nm femtosecond laser pulse to transform it into an elliptically shaped beam at focus. This lens was developed to give an alternative method of micromachining bulk transparent materials. The challenge for femtosecond laser processing is to control the nonlinear affect of self-focusing, which can occur when using a fast f-number lens. Once the focused spot is dominated by self-focusing the predicted focused beam becomes a filament inside the bulk, which is an undesirable effect. The anamorphic lens resolves this self-focusing by increasing the numerical aperture (NA) and employing an elliptical beam shape. The anamorphic lens was designed to furnish a 2.5mum by 190mum line at focus. Provided the pulse energy is high enough, transparent bulk material will be damaged with a single femtosecond laser pulse. Damage in this text refers to visual change in the index of refraction as observed under an optical microscope. Using this elliptical shape (or line), grating structures were micro-machined on the surface of SiC bulk transparent substrate. SiC was chosen because it is known for its micromachining difficulty and its crystalline structure. From the lack of self-focusing and using energy that is just above the damage threshold the focused line beam generated from the anamorphic lens grating structures produced a line shape nearly identical to the geometrical approximation. In this paper we discuss a new method of writing gratings (or other types of structures) in bulk transparent materials using a single femtosecond laser pulse. We will investigate the grating structures visually (inspected under an optical microscope) and also by use of an atomic force microscopy (AFM). In addition, we test the grating diffraction efficiency (DE) as a function of grating spacing, d. PMID:19550582

  6. Fatal cutaneous mycosis in tentacled snakes caused by the chrysosporium anamorph of nannizziposis vriesii

    DEFF Research Database (Denmark)

    Bertelsen, Mads Frost; Crawshaw, Graham J.; Sigler, Lynne; Smith, Dale A.

    2005-01-01

    The fungus Chrysosporium anamorph of Nannizziopsis vriesii was identified as the caurse of fatal, multifocal, heterophilic dermatitis in for freshwater aquatic captive-bred tentacled snakes......The fungus Chrysosporium anamorph of Nannizziopsis vriesii was identified as the caurse of fatal, multifocal, heterophilic dermatitis in for freshwater aquatic captive-bred tentacled snakes...

  7. A study of Cyathicula strobilina and its Chalara anamorph in vitro

    OpenAIRE

    Gams, Walter; Philippi, Susanne

    1992-01-01

    The connection of Cyathicula strobilina (Fr.: Fr.) Korf & Dixon with the Chalara strobilina Sacc. anamorph is confirmed by means of ascospore isolations. The in vitro morphology of the latter is described in detail and the heterogeneity of the genus Chalara is pointed out.

  8. Nonminimally coupled inflation with initial conditions from a preinflation anamorphic contracting era

    Science.gov (United States)

    McDonald, John

    2016-08-01

    Inflation due to a nonminimally coupled scalar field, as first proposed by Salopek, Bardeen and Bond (SBB), is in good agreement with the observed value of the spectral index and constraints on the tensor-to-scalar ratio. Here we explore the possibility that SBB inflation represents the late stage of a Universe which emerges from an early contracting era. We present a model in which the Universe smoothly transitions from an anamorphic contracting era to late-time SBB inflation without encountering a singular bounce. This corresponds to a continuous expansion in the Einstein frame throughout. We show that the anamorphic contracting era is able to provide the smooth superhorizon initial conditions necessary for subsequent SBB inflation to occur. The model predicts corrections to the nonminimal coupling, kinetic term and potential of SBB inflation which can observably increase the spectral index relative to its SBB prediction.

  9. Non-Minimally Coupled Inflation with a Pre-Inflation Anamorphic Contracting Era

    CERN Document Server

    McDonald, John

    2015-01-01

    Inflation due to a non-minimally coupled scalar field, as first proposed by Salopek, Bardeen and Bond (SBB), is in good agreement with the observed value of spectral index and constraints on the tensor-to-scalar ratio. Here we explore the possibility that SBB inflation represents the late stage of a Universe which emerges from an early contracting era. We present a model in which the Universe smoothly transitions from an anamorphic contracting era to late-time SBB inflation without encountering a singular bounce. This corresponds to a continuous expansion in the Einstein frame throughout. We show that the anamorphic contracting era is able to provide the smooth superhorizon initial conditions necessary for subsequent SBB inflation to occur. The model predicts corrections to the non-minimal coupling, kinetic term and potential of SBB inflation which can observably increase the observed spectral index relative to its SBB prediction.

  10. The anamorphic genus Monotosporella (Ascomycota) from Eocene amber and from modern Agathis resin.

    Science.gov (United States)

    Sadowski, Eva-Maria; Beimforde, Christina; Gube, Matthias; Rikkinen, Jouko; Singh, Hukam; Seyfullah, Leyla J; Heinrichs, Jochen; Nascimbene, Paul C; Reitner, Joachim; Schmidt, Alexander R

    2012-10-01

    The anamorphic fungal genus Monotosporella (Ascomycota, Sordariomycetes) has been reco-vered from a piece of Early Eocene Indian amber, as well as from the surface of extant resin flows in New Caledonia. The fossil fungus was obtained from the Tarkeshwar Lignite Mine of Gujarat State, western India, and was part of the biota of an early tropical angiosperm rainforest. The amber inclusion represents the second fossil record of Sordariomycetes, as well as the first fossil of its particular order (either Savoryellales or Chaetosphaeriales). The fossil fungus is distinguished from extant representatives by possessing both short conidiophores and small two-septate pyriform conidia, and is described as Monotosporella doerfeltii sp. nov. Inside the amber, the anamorph is attached to its substrate, which is likely the degraded thallus of a cladoniform lichen. The extant New Caledonian species is assigned to Monotosporella setosa. It was found growing on semi-solidified resin flows of Agathis ovata (Araucariaceae), and is the first record of Monotosporella from modern resin substrates. PMID:23063189

  11. Implications of Planck2015 for inflationary, ekpyrotic and anamorphic bouncing cosmologies

    CERN Document Server

    Ijjas, Anna

    2015-01-01

    The results from Planck2015, when combined with earlier observations from WMAP, ACT, SPT and other experiments, were the first observations to disfavor the "classic" inflationary paradigm. To satisfy the observational constraints, inflationary theorists have been forced to consider plateau-like inflaton potentials that introduce more parameters and more fine-tuning, problematic initial conditions, multiverse-unpredictability issues, and a new 'unlikeliness problem.' Some propose turning instead to a "postmodern" inflationary paradigm in which the cosmological properties in our observable universe are only locally valid and set randomly, with completely different properties (and perhaps even different physical laws) existing in most regions outside our horizon. By contrast, the new results are consistent with the simplest versions of ekpyrotic cyclic models in which the universe is smoothed and flattened during a period of slow contraction followed by a bounce, and another promising bouncing theory, anamorphic...

  12. Implications of Planck2015 for inflationary, ekpyrotic and anamorphic bouncing cosmologies

    Science.gov (United States)

    Ijjas, Anna; Steinhardt, Paul J.

    2016-02-01

    The results from Planck2015, when combined with earlier observations from the Wilkinson Microwave Anisotropy Probe, Atacama Cosmology Telescope, South Pole Telescope and other experiments, were the first observations to disfavor the ‘classic’ inflationary paradigm. To satisfy the observational constraints, inflationary theorists have been forced to consider plateau-like inflaton potentials that introduce more parameters and more fine-tuning, problematic initial conditions, multiverse-unpredictability issues, and a new ‘unlikeliness problem’. Some propose turning instead to a ‘postmodern’ inflationary paradigm in which the cosmological properties in our observable Universe are only locally valid and set randomly, with completely different properties (and perhaps even different physical laws) existing in most regions outside our horizon. By contrast, the new results are consistent with the simplest versions of ekpyrotic cyclic models in which the Universe is smoothed and flattened during a period of slow contraction followed by a bounce, and another promising bouncing theory, anamorphic cosmology, has been proposed that can produce distinctive predictions.

  13. Pseudozyma vetiver sp. nov., a novel anamorphic ustilaginomycetous yeast species isolated from the phylloplane in Thailand.

    Science.gov (United States)

    Chamnanpa, Thunnicha; Limtong, Pitayakon; Srisuk, Nantana; Limtong, Savitree

    2013-11-01

    Three strains representing one novel yeast species were isolated from the phylloplanes of the vetiver grasses (DMKU-LV90 and DMKU-LV99(T)) and sugarcane (DMKU-SP260) collected in Thailand by leaf washing followed by a plating technique. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics and the sequence analysis of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer region (ITS), the three strains were found to represent a single novel anamorphic ustilaginomycetous yeast species in the genus Pseudozyma. The name Pseudozyma vetiver sp. nov. is proposed for this novel species. The type strain is DMKU-LV99(T) (BCC 61021 = CBS 12824). The novel species showed phylogenetic relationships to the other members of the genus Pseudozyma and to teleomorphic fungal genera, namely Ustilago, Sporisorium and Anomalomyces in Ustilaginaceae, Ustilaginales. The three strains showed identical sequences both in the D1/D2 and ITS regions. The Pseudozyma species closest to the novel species in terms of pairwise sequence similarity in the D1/D2 region was Pseudozyma pruni but with 2.3 % nucleotide substitutions (14 nucleotide substitutions and no gaps out of 606 nt). The novel species and P. pruni differed by 10.9 % nucleotide substitutions (75 nucleotide substitutions and 31 gaps out of 691 nt) in the ITS region. The phylogenetic analysis based on the combined sequences of the ITS region and the D1/D2 region of the LSU rRNA gene showed that the novel species was found to be most closely related to Pseudozyma fusiformata but with 2.9 % nucleotide substitutions in the D1/D2 region and 7.4 % nucleotide substitutions in the ITS region. PMID:23877892

  14. Anamorphic preclinical SPECT imaging with high-resolution silicon double-sided strip detectors

    Science.gov (United States)

    Durko, Heather L.

    Preclinical single-photon emission computed tomography (SPECT) is an essential tool for studying progression, response to treatment, and physiological changes in small animal models of human disease. The wide range of imaging applications is often limited by the static design of many preclinical SPECT systems. We have developed a prototype imaging system that replaces the standard static pinhole aperture with two sets of movable, keel-edged copper-tungsten blades configured as crossed (skewed) slits. These apertures can be positioned independently between the object and detector, producing an anamorphic image in which the axial and transaxial magnications are not constrained to be equal. We incorporated a 60 mm x 60 mm, millimeter-thick megapixel silicon double-sided strip detector that permits ultrahigh-resolution imaging. While the stopping power of silicon is low for many common clinical radioisotopes, its performance is sufficient in the range of 20-60 keV to allow practical imaging experiments. The low-energy emissions of 125I fall within this energy window, and the 60-day half life provides an advantage for longitudinal studies. The flexible nature of this system allows the future application of adaptive imaging techniques. We have demonstrated ˜225-mum axial and ˜175-mum transaxial resolution across a 2.65 cm3 cylindrical field of view, as well as the capability for simultaneous multi-isotope acquisitions. We describe the key advancements that have made this system operational, including bringing up a new detector readout ASIC, development of detector control software and data-processing algorithms, and characterization of operating characteristics. We describe design and fabrication of the adjustable slit aperture platform, as well as the development of an accurate imaging forward model and its application in a novel geometric calibration technique and a GPU-based ultrahigh-resolution reconstruction code.

  15. Cryptococcus randhawai sp nov., a novel anamorphic basidiomycetous yeast isolated from tree trunk hollow of Ficus religiosa (peepal tree) from New Delhi, India

    NARCIS (Netherlands)

    Khan, Z.U.; Ahmad, S.; Hagen, F.; Fell, J.W.; Kowshik, T.; Chandy, R.; Boekhout, T.

    2010-01-01

    A novel anamorphic Cryptococcus species is described, which was isolated in New Delhi (India) from decaying wood of a tree trunk hollow of Ficus religiosa. On the basis of sequence analysis of the D1/D2 domains of the 26S rRNA gene and the internally transcribed spacer (ITS)-1 and ITS-2 region seque

  16. Deep fungal dermatitis caused by the Chrysosporium anamorph of Nannizziopsis vriesii in captive coastal bearded dragons (Pogona barbata).

    Science.gov (United States)

    Johnson, R S P; Sangster, C R; Sigler, L; Hambleton, S; Paré, J A

    2011-12-01

    Deep fungal dermatitis caused by the Chrysosporium anamorph of Nannizziopsis vriesii (CANV) was diagnosed in a group of coastal bearded dragons (Pogona barbata). The outbreak extended over a 6-month period, with four of six lizards from the same zoological outdoor enclosure succumbing to infection. A fifth case of dermatomycosis was identified in a pet lizard originally sourced from the wild. Diagnosis of infection with the CANV was based on similar clinical signs and histopathology in all animals and confirmed by culture and sequencing of the fungus from one animal. This is the first report of the CANV causing disease in a terrestrial reptile species in Australia and the first in the coastal bearded dragon. PMID:22103953

  17. Anthraquinone dyes decolorization capacity of anamorphic Bjerkandera adusta CCBAS 930 strain and its HRP-like negative mutants.

    Science.gov (United States)

    Korniłłowicz-Kowalska, Teresa; Rybczyńska, Kamila

    2014-06-01

    Cultures of the anamorphic fungus Bjerkandera adusta CCBAS 930 decolorizing, in stationary cultures, 0.01 % solutions of carminic acid and Poly R-478, were characterised by a strong increase in the activity of the horseradish peroxidase (HRP-like) and manganese-dependent peroxidase (MnP) at a low activity of lignin peroxidase. Genotypically modified mutants of B. adusta CCBAS 930: 930-5 and 930-14, with total or partial loss of decolorization capabilities relative to anthraquinonic dyes, showed inhibition of the activity of HRP-like peroxidase and MnP. Whereas, compared to the parental strain, in the mutant cultures there was an increase in the activity of lignin peroxidase and laccase. The paper presents a discussion of the role of the studied enzymatic activities in the process of decolorization of anthraquinonic dyes by the strain B. adusta CCBAS 930. PMID:24415463

  18. Evolution and ecophysiology of the industrial producer Hypocrea jecorina (Anamorph Trichoderma reesei and a new sympatric agamospecies related to it.

    Directory of Open Access Journals (Sweden)

    Irina S Druzhinina

    Full Text Available BACKGROUND: Trichoderma reesei, a mitosporic green mould, was recognized during the WW II based on a single isolate from the Solomon Islands and since then used in industry for production of cellulases. It is believed to be an anamorph (asexual stage of the common pantropical ascomycete Hypocrea jecorina. METHODOLOGY/PRINCIPAL FINDINGS: We combined molecular evolutionary analysis and multiple methods of phenotype profiling in order to reveal the genetic relationship of T. reesei to H. jecorina. The resulting data show that the isolates which were previously identified as H. jecorina by means of morphophysiology and ITS1 and 2 (rRNA gene cluster barcode in fact comprise several species: i H. jecorina/T. reesei sensu stricto which contains most of the teleomorphs (sexual stages found on dead wood and the wild-type strain of T. reesei QM 6a; ii T. parareesei nom. prov., which contains all strains isolated as anamorphs from soil; iii and two other hypothetical new species for which only one or two isolates are available. In silico tests for recombination and in vitro mating experiments revealed a history of sexual reproduction for H. jecorina and confirmed clonality for T. parareesei nom. prov. Isolates of both species were consistently found worldwide in pantropical climatic zone. Ecophysiological comparison of H. jecorina and T. parareesei nom. prov. revealed striking differences in carbon source utilization, conidiation intensity, photosensitivity and mycoparasitism, thus suggesting adaptation to different ecological niches with the high opportunistic potential for T. parareesei nom. prov. CONCLUSIONS: Our data prove that T. reesei belongs to a holomorph H. jecorina and displays a history of worldwide gene flow. We also show that its nearest genetic neighbour--T. parareesei nom. prov., is a cryptic phylogenetic agamospecies which inhabits the same biogeographic zone. These two species thus provide a so far rare example of sympatric speciation

  19. Cytological Characterization of Anamorphic Fungus Lecanicillium pui and Its Relationship with Chinese Caterpillar Mushroom, Ophiocordyceps sinensis (Ascomycetes).

    Science.gov (United States)

    Lei, Wei; Zhang, Guren; Wu, Guangguo; Liu, Xin

    2016-01-01

    Ophiocordyceps sinensis (syn. Cordyceps sinensis), one of the most valuable medicinal mushrooms, has great economic importance on the Tibetan Plateau. We isolated an anamorphic fungus Lecanicillium pui from natural O. sinensis specimens and found that the optimal temperature for its culture on potato dextrose agar media was 25°C. Cell ultrastructure in L. pui hyphae and spores was characterized by transmission electron microscopy, and it was observed that some primary organelles showed the typical fungal features. Five chemical elements were determined in this fungus and niobium was discovered for the first time even with trace amounts. A species-specific method, nested polymerase chain reaction, was established to investigate the colonization of this fungus. Thus, the extensive distribution of L. pui on O. sinensis, in the shape of hyphae or mycelia, suggested that it may have subtle and chronic effects on the growth of the O. sinensis teleomorphic stage. These findings provide a potential reference, in the view of microbial ecology, for the study on the occurrence and mechanism of development of O. sinensis. PMID:27279447

  20. Analysis of expressed sequence tags from the anamorphic basidiomycetous yeast, Pseudozyma antarctica, which produces glycolipid biosurfactants, mannosylerythritol lipids.

    Science.gov (United States)

    Morita, Tomotake; Konishi, Masaaki; Fukuoka, Tokuma; Imura, Tomohiro; Kitamoto, Dai

    2006-07-15

    Pseudozyma antarctica T-34 secretes a large amount of biosurfactants (BS), mannosylerythritol lipids (MEL), from different carbon sources such as hydrocarbons and vegetable oils. The detailed biosynthetic pathway of MEL remained unknown due to lack of genetic information on the anamorphic basidiomycetous yeasts, including the genus Pseudozyma. Here, in order to obtain genetic information on P. antarctica T-34, we constructed a cDNA library from yeast cells producing MEL from soybean oil and identified the genes expressed through the creation of an expressed sequence tags (EST) library. We generated 398 ESTs, assembled into 146 contiguous sequences. Based upon a BLAST search similarity cut-off of E

  1. Light-dependent roles of the G-protein α subunit GNA1 of Hypocrea jecorina (anamorph Trichoderma reesei

    Directory of Open Access Journals (Sweden)

    Kubicek Christian P

    2009-09-01

    Full Text Available Abstract Background The filamentous ascomycete Hypocrea jecorina (anamorph Trichoderma reesei is primarily known for its efficient enzymatic machinery that it utilizes to decompose cellulosic substrates. Nevertheless, the nature and transmission of the signals initiating and modulating this machinery are largely unknown. Heterotrimeric G-protein signaling represents one of the best studied signal transduction pathways in fungi. Results Analysis of the regulatory targets of the G-protein α subunit GNA1 in H. jecorina revealed a carbon source and light-dependent role in signal transduction. Deletion of gna1 led to significantly decreased biomass formation in darkness in submersed culture but had only minor effects on morphology and hyphal apical extension rates on solid medium. Cellulase gene transcription was abolished in Δgna1 on cellulose in light and enhanced in darkness. However, analysis of strains expressing a constitutively activated GNA1 revealed that GNA1 does not transmit the essential inducing signal. Instead, it relates a modulating signal with light-dependent significance, since induction still required the presence of an inducer. We show that regulation of transcription and activity of GNA1 involves a carbon source-dependent feedback cycle. Additionally we found a function of GNA1 in hydrophobin regulation as well as effects on conidiation and tolerance of osmotic and oxidative stress. Conclusion We conclude that GNA1 transmits a signal the physiological relevance of which is dependent on both the carbon source as well as the light status. The widespread consequences of mutations in GNA1 indicate a broad function of this Gα subunit in appropriation of intracellular resources to environmental (especially nutritional conditions.

  2. Sulphur metabolism and cellulase gene expression are connected processes in the filamentous fungus Hypocrea jecorina (anamorph Trichoderma reesei

    Directory of Open Access Journals (Sweden)

    Schmoll Monika

    2008-10-01

    Full Text Available Abstract Background Sulphur compounds like cysteine, methionine and S-adenosylmethionine are essential for the viability of most cells. Thus many organisms have developed a complex regulatory circuit that governs the expression of enzymes involved in sulphur assimilation and metabolism. In the filamentous fungus Hypocrea jecorina (anamorph Trichoderma reesei little is known about the participants in this circuit. Results Analyses of proteins binding to the cellulase activating element (CAE within the promotor of the cellobiohydrolase cbh2 gene led to the identification of a putative E3 ubiquitin ligase protein named LIMPET (LIM1, which is an orthologue of the sulphur regulators SCON-2 of Neurospora crassa and Met30p of Saccharomyces cerevisiae. Transcription of lim1 is specifically up-regulated upon sulphur limitation and responds to cellulase inducing conditions. In addition, light dependent stimulation/shut down of cellulase gene transcription by methionine in the presence of sulphate was observed. Further, lim1 transcriptionally reacts to a switch from constant darkness to constant light and is subject to regulation by the light regulatory protein ENVOY. Thus lim1, despite its function in sulphur metabolite repression, responds both to light as well as sulphur- and carbon source. Upon growth on cellulose, the uptake of sulphate is dependent on the light status and essential for growth in light. Unlike other fungi, growth of H. jecorina is not inhibited by selenate under low sulphur conditions, suggesting altered regulation of sulphur metabolism. Phylogenetic analysis of the five sulphate permeases found in the genome of H. jecorina revealed that the predominantly mycelial sulphate permease is lacking, thus supporting this hypothesis. Conclusion Our data indicate that the significance of the sulphate/methionine-related signal with respect to cellulase gene expression is dependent on the light status and reaches beyond detection of sulphur

  3. Trichosporon wieringae sp.nov., an anamorphic basidiomycetous yeast from soil, and assimilation of some phenolic compounds, polysaccharides and other non-conventional carbon sources by saprophytic Trichosporon species

    NARCIS (Netherlands)

    Middelhoven, W.J.

    2004-01-01

    A morphological and physiological description of an anamorphic basidiomycetous yeast species isolated from soil, named Trichosporon wieringae, is presented. The phylogenetic position within the genus, based on nuclear base sequencing of the D1/D2 region of the large subunit of rDNA and of the ITS re

  4. Cryptococcus randhawai sp. nov., a novel anamorphic basidiomycetous yeast isolated from tree trunk hollow of Ficus religiosa (peepal tree) from New Delhi, India.

    Science.gov (United States)

    Khan, Zia U; Ahmad, Suhail; Hagen, Ferry; Fell, Jack W; Kowshik, Tusharantak; Chandy, Rachel; Boekhout, Teun

    2010-03-01

    A novel anamorphic Cryptococcus species is described, which was isolated in New Delhi (India) from decaying wood of a tree trunk hollow of Ficus religiosa. On the basis of sequence analysis of the D1/D2 domains of the 26S rRNA gene and the internally transcribed spacer (ITS)-1 and ITS-2 region sequences, the isolate belonged to the Cryptococcus albidus cluster (Filobasidiales, Tremellomycetes) and was closely related to Cryptococcus saitoi, Cryptococcus cerealis and Cryptococcus friedmannii with 98% sequence identity. Phenotypically, the species differed from C. saitoi with respect to growth temperature (up to 37degrees C), presence of a thin capsule, ability to grow in the absence of vitamins, and inability to assimilate citrate and ethylamine. With respect to C. friedmannii, it differed in growth temperature, ability to assimilate lactose, raffinose, L: -rhamnose, myo-inositol, and inability to utilize citrate. Furthermore, our isolate also differed from C. cerealis in growth temperature, presence of capsule and inability to assimilate L: -sorbose. In view of the above phenotypic differences and unique rDNA sequences, we consider that our isolate represents a new species of Cryptococcus, and therefore, a new species, Cryptococcus randhawai is proposed for this taxon. The type strain J11/2002 has been deposited in the culture collection of the Centraalbureau voor Schimmelcultures (CBS10160) and CABI Biosciences (IMI 393306). PMID:20091225

  5. An isolate of Arthroderma benhamiae with Trichophyton mentagrophytes var. erinacei anamorph isolated from a four-toed hedgehog (Atelerix albiventris) in Japan.

    Science.gov (United States)

    Takahashi, Yoko; Haritani, Kuniko; Sano, Ayako; Takizawa, Kayoko; Fukushima, Kazutaka; Miyaji, Makoto; Nishimura, Kazuko

    2002-01-01

    A female four-toed hedgehog probably imported from Africa and kept as a pet by a family suffered from depilation and mite (Caparinia tripilis) infection. Depilated quills were inoculated on a commercially available medium and an isolate of the dermatophytes was obtained. A giant colony after 14 days incubation on yeast extract Sabourauds agar had a central umbo with white granular surface and a yellow pigment ring in the reverse. The hedgehog isolate produced numerous elongated microconidia singly attached along the sides of hyphae. Macroconidia were somewhat irregular in shape and size and 2-6 septa. Abundant intermediate sized spores between micro- and macro conidia and few spirals were observed. Hair perforation and urease activity tests were positive. Maximum growth temperature was 40 C. In the mating tests using the tester strains of both African and Americano-European races of Arthroderma benhamiae, the strain produced numerous gymnothecia only when paired with the African race mating type minus(-). In addition, 591 bases of the internal transcribed spacer region of the ribosomal RNA gene including the 5.8S region (ITS1-5.8S-ITS2) were sequenced and corresponded to those of T. mentagrophytes var. erinacei (DDBJ/EMBL/GenBank accession numbers Z97996 and Z97997) by more than 99.7%. Therefore, our case is the first isolation of A. benhamiae with T. mentagrophytes var. erinacei anamorph in Japan. PMID:12402026

  6. Onychomycosis caused by Scytalidium dimidiatum. Report of two cases. Review of the taxonomy of the synanamorph and anamorph forms of this coelomycete

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    LACAZ Carlos da Silva

    1999-01-01

    Full Text Available The authors report two cases of onychomycosis in the dystrophic form, one of them involving an HIV-positive patient, provoked by Scytalidium dimidiatum, previously called Scytalidium lignicola. The subject is reviewed from the taxonomic viewpoint, considering the anamorph Hendersonula toruloidea as a synonym of Nattrassia mangiferae, and having Scytalidium dimidiatum as the major synanamorph. According to many mycologists, Scytalidium hyalinum may be a separate species or a hyaline mutant of Scytalidium dimidiatum. Scytalidium lignicola Pesante 1957 was considered to be the type-species of the genus by ELLIS (197113 and later to be a "conidial state" of Hendersonula toruloidea by the same author, today known as Nattrassia mangiferae. The microorganism lives only on the roots of certain plants (mainly Platanus and Pinus. It produces pycnidia and is not considered to be a pathogen, although it is considered as a possible emerging agent capable of provoking opportunistic fungal lesions. The importance of this topic as one of the most outstanding in fungal taxonomy, so likely to be modified over time, as well as its interest in the field of dermatologic mycology, are emphasized.

  7. Molecular characterization of reptile pathogens currently known as members of the chrysosporium anamorph of Nannizziopsis vriesii complex and relationship with some human-associated isolates.

    Science.gov (United States)

    Sigler, Lynne; Hambleton, Sarah; Paré, Jean A

    2013-10-01

    In recent years, the Chrysosporium anamorph of Nannizziopsis vriesii (CANV), Chrysosporium guarroi, Chrysosporium ophiodiicola, and Chrysosporium species have been reported as the causes of dermal or deep lesions in reptiles. These infections are contagious and often fatal and affect both captive and wild animals. Forty-nine CANV isolates from reptiles and six isolates from human sources were compared with N. vriesii based on their cultural characteristics and DNA sequence data. Analyses of the sequences of the internal transcribed spacer and small subunit of the nuclear ribosomal gene revealed that the reptile pathogens and human isolates belong in well-supported clades corresponding to three lineages that are distinct from all other taxa within the family Onygenaceae of the order Onygenales. One lineage represents the genus Nannizziopsis and comprises N. vriesii, N. guarroi, and six additional species encompassing isolates from chameleons and geckos, crocodiles, agamid and iguanid lizards, and humans. Two other lineages comprise the genus Ophidiomyces, with the species Ophidiomyces ophiodiicola occurring only in snakes, and Paranannizziopsis gen. nov., with three new species infecting squamates and tuataras. The newly described species are Nannizziopsis dermatitidis, Nannizziopsis crocodili, Nannizziopsis barbata, Nannizziopsis infrequens, Nannizziopsis hominis, Nannizziopsis obscura, Paranannizziopsis australasiensis, Paranannizziopsis californiensis, and Paranannizziopsis crustacea. Chrysosporium longisporum has been reclassified as Paranannizziopsis longispora. N. guarroi causes yellow fungus disease, a common infection in bearded dragons and green iguanas, and O. ophiodiicola is an emerging pathogen of captive and wild snakes. Human-associated species were not recovered from reptiles, and reptile-associated species were recovered only from reptiles, thereby mitigating concerns related to zoonosis. PMID:23926168

  8. Molecular Characterization of Reptile Pathogens Currently Known as Members of the Chrysosporium Anamorph of Nannizziopsis vriesii Complex and Relationship with Some Human-Associated Isolates

    Science.gov (United States)

    Hambleton, Sarah; Paré, Jean A.

    2013-01-01

    In recent years, the Chrysosporium anamorph of Nannizziopsis vriesii (CANV), Chrysosporium guarroi, Chrysosporium ophiodiicola, and Chrysosporium species have been reported as the causes of dermal or deep lesions in reptiles. These infections are contagious and often fatal and affect both captive and wild animals. Forty-nine CANV isolates from reptiles and six isolates from human sources were compared with N. vriesii based on their cultural characteristics and DNA sequence data. Analyses of the sequences of the internal transcribed spacer and small subunit of the nuclear ribosomal gene revealed that the reptile pathogens and human isolates belong in well-supported clades corresponding to three lineages that are distinct from all other taxa within the family Onygenaceae of the order Onygenales. One lineage represents the genus Nannizziopsis and comprises N. vriesii, N. guarroi, and six additional species encompassing isolates from chameleons and geckos, crocodiles, agamid and iguanid lizards, and humans. Two other lineages comprise the genus Ophidiomyces, with the species Ophidiomyces ophiodiicola occurring only in snakes, and Paranannizziopsis gen. nov., with three new species infecting squamates and tuataras. The newly described species are Nannizziopsis dermatitidis, Nannizziopsis crocodili, Nannizziopsis barbata, Nannizziopsis infrequens, Nannizziopsis hominis, Nannizziopsis obscura, Paranannizziopsis australasiensis, Paranannizziopsis californiensis, and Paranannizziopsis crustacea. Chrysosporium longisporum has been reclassified as Paranannizziopsis longispora. N. guarroi causes yellow fungus disease, a common infection in bearded dragons and green iguanas, and O. ophiodiicola is an emerging pathogen of captive and wild snakes. Human-associated species were not recovered from reptiles, and reptile-associated species were recovered only from reptiles, thereby mitigating concerns related to zoonosis. PMID:23926168

  9. Use of Hypocrea jecorina (anamorph Trichoderma reesei) as a model system for Trichoderma biocontrol of Pythium blight identifies new targets for genetic strain improvement

    Institute of Scientific and Technical Information of China (English)

    Seidl V; Schmoll M; Scherm B; Balmas V; Seiboth B; Migheli Q; Kubicek C P

    2004-01-01

    @@ Biocontrol by Trichoderma has been studied mainly with selected isolates of T. harzianum, T.atroviride and T. asperellum, which are members of sections Pachybasium and Trichoderma. In contrast, species from section Longibrachiatum have only rarely been studied. On the other hand, one taxon from this section-Hypocrea jecorina (anamorph: Trichoderma reesei)-has been widely used for the production of cellulolytic and hemicellulolytic enzymes and recombinant proteins. As far as Trichoderma is concerned, molecular genetic methods and tools are most advanced in H. jecorina,and its genome has recently been fully sequenced, thus making this taxon a model organism for the genus. Here we will demonstrate that H. jecorina is able to antagonize plant pathogenic fungi in plate confrontation tests, and can protect tomato and cucumber plants against Pythium ultimum blight.Using this as a model case, we made use of available H. jecorina mutants to investigate (a) whether carbon catabolite repression via the Cre1-regulator protein has an impact on biocontrol, and (b)whether cellulase gene expression is necessary for biocontrol of P. ultimum. In the first case, plate confrontation tests and in planta experiments yielded opposite results, i.e. while a Cre1 mutant was more active in antagonization of fungi on plates, the survival rates of P. ultimum-inoculated cucumber plants was lower than with the H. jecorina wild-type strain. Mutants of H. jecorina,unable to form cellulases, were still able to antagonize fungi on plates and provided similar protection of tomatos against P. ultimum as the wild type, indicating that the pronounced biocontrol ability of H.jecorina against fungi with cellulose-containing cell-walls is not due to its high cellulolytic activity. A strain disrupted in the light-modulator gene envoy (Schmoll et al., ms submitted) exhibited in planta biocontrol activity strongly exceeding that of the wild-type strain, thereby providing a first link between Trichoderma

  10. Diversidad de Anamorfos de Ascomycota en bosques nativos de Celtis tala (Ulmaceae en la Provincia de Buenos Aires, Argentina Diversity of anamorphic fungi in Celtis tala (Ulmaceae native forest from Buenos Aires province, Argentina

    Directory of Open Access Journals (Sweden)

    Natalia Allegrucci

    2007-07-01

    Full Text Available En el presente trabajo se analizó la diversidad de microhongos que constituyen la comunidad fúngica saprótrofa (anamorfos de Ascomycota presente en hojarasca y suelo en bosques nativos de Celtis tala (tala en el partido de Magdalena, provincia de Buenos Aires. Se realizaron muestreos estacionales durante dos años (2004-2005 y se aislaron e identificaron los hongos presentes. Se calculó la frecuencia relativa porcentual de cada taxón; estos datos fueron utilizados para evaluar la diversidad fúngica mediante el cálculo del Indice de Diversidad de Shanon y Weaver ( H '. Para discriminar las comunidades fúngicas se utilizó el coeficiente de similitud de Sorensen ( S '. Se identificaron 104 taxones de anamorfos de Ascomycota, de los cuales 54 fueron aislados de hojarasca y 58 de suelo, registrándose 8 especies en común para ambos tipos de muestra. De las especies compartidas, las que presentaron frecuencias más altas para hojarasca fueron las menos representadas en suelo y viceversa. El resultado del cálculo del coeficiente de similitud de Sorensen fue de 0.14, indicando que la comunidad de hongos saprótrofos que crece en la hojarasca de tala está integrada por diferentes especies a las que caracterizan la micobiota del suelo de la misma área. No se encontraron diferencias significativas en el índice de diversidad.In this paper we analyze the diversity of species that compose the saprotrophic (anamorphic Ascomycota fungi community in the leaf litter and soil in Celtis tala forest in Magdalena , located in the province of Buenos Aires . Seasonal samples were taken during two years (2004-2005, and fungi were isolated and identified. The relative frequencies of fungi were calculated. To compare the similarity of the fungi composition between different habitats, Sorensen's index of similarity (S´ was applied. The frequencies of occurrence of these fungi were recorded and Shannon Weaver index (H´ was applied to evaluate fungal

  11. Reactions of winter wheat to Mycosphaerella graminicola (anamorph Septoria tritici

    Directory of Open Access Journals (Sweden)

    Lubomir Věchet

    2012-12-01

    Full Text Available Reaction of six winter wheat cultivars and lines (Vlasta, Šárka, Charger, 00ST022, SG-U8044C a SG-U2113B to Mycosphaerella graminicola isolate BR-331 and UH-05 on leaf segments of the detached second seedling leaf of cultivars placed on water agar with bezimidazole in clear plastic box were tested. The isolate BR-331 produced high occurrence of the disease in the cultivar Šárka, middle occurrence (the percentage covered by lesions bearing pycnidia in the cultivar Vlasta and SG-U8044C and low occurrence in the line 00ST0022. The isolate UH-105 produced high occurrence in the cultivar 00ST022 and middle occurrence in the cultivar Vlasta. The cultivar Charger was resistant. The cultivar Šárka was attacked at least. Results show on different virulence of M. graminicola isolates to wheat cultivars.

  12. Extensive colonization of apples by smut anamorphs causes a new posthavest disorder

    NARCIS (Netherlands)

    Boekhout, T.; Gildemacher, P.R.; Theelen, B.; Müller, W.H.; Heijne, B.; Lutz, M.

    2006-01-01

    Colonization of apples by ballistoconidium-forming fungi causes a new disorder, here named 'white haze'. White haze may occur in mild form in the field, but only becomes problematic after Ultra-Low Oxygen storage, and, therefore, may be considered as a postharvest disorder. All isolates, obtained us

  13. Polyphasic taxonomy of the heat resistant ascomycete genus Byssochlamys and its Paecilomyces anamorphs

    DEFF Research Database (Denmark)

    Samson, R.A.; Houbraken, J.; Varga, J.;

    2009-01-01

    macromorphological characters are valuable for identification purposes, including the shape and size of conidia and ascospores, presence and ornamentation of chlamydospores, growth rates on MEA and CYA and acid production on CREA. A dichotomous key is provided for species identification based on phenotypical...

  14. Microascus cinereus (Anamorph Scopulariopsis) Brain Abscess in a Bone Marrow Transplant Recipient

    OpenAIRE

    Baddley, John W.; Moser, Stephen A.; Sutton, Deanna A.; Pappas, Peter G.

    2000-01-01

    We report the first documented case of brain abscess due to the dematiaceous fungus Microascus cinereus, an organism common in soil and stored grain. M. cinereus was isolated from brain abscess material from a bone marrow transplant recipient. The patient responded well to treatment by amphotericin B lipid complex, itraconazole, and a craniotomy but later died from secondary complications caused by graft-versus-host disease.

  15. A new fungal genus, Teracosphaeria, with a phialophora-like anamorph (Sordariomycetes, Ascomycota)

    Czech Academy of Sciences Publication Activity Database

    Réblová, Martina; Seifert, K. A.

    2007-01-01

    Roč. 111, - (2007), s. 287-298. ISSN 0953-7562 R&D Projects: GA ČR GA206/06/1806 Institutional research plan: CEZ:AV0Z60050516 Keywords : Ceratosphaeria * phylogeny * Phialophora Subject RIV: EF - Botanics Impact factor: 1.861, year: 2007

  16. Candida wangnamkhiaoensis sp. nov., an anamorphic yeast species in the Hyphopichia clade isolated in Thailand.

    Science.gov (United States)

    Limtong, Savitree; Kaewwichian, Rungluk; Jindamorakot, Sasitorn; Yongmanitchai, Wichien; Nakase, Takashi

    2012-06-01

    Two strains representing a single novel yeast species were isolated from a flower of Calycoopteris floribunda Lame (SK170(T)) and insect frass (ST-122) collected in Thailand. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics, and the sequence analysis of the D1/D2 domain of the large subunit rRNA gene and the internal transcribed spacer region, the two strains were assigned as a single novel Candida species in the Hyphopichia clade for which the name Candida wangnamkhiaoensis sp. nov. is proposed. The type strain is SK170(T)=BCC 39604(T)=NBRC 106724(T)=CBS 11695(T)). PMID:22331449

  17. Aquatic fungi from peat swamp palms: Phruensis brunneispora gen. et sp. nov. and its hyphomycete anamorph

    OpenAIRE

    Pinruan, U; Sakayaroj, J.; Jones, EBG; Hyde, KD

    2004-01-01

    Phruensis brunneispora is a new genus and species occurring on decaying trunks of the palm Licuala longecalycata in Sirindhorn Peat Swamp Forest, Thailand. We compare the genus with other aquatic ascomycetes with falcate septate ascospores: Pseudohalonectria and Ophioceras. Ascospores differ from species in these genera in being brown with lighter end cells. Also, the ascus pore is subapical, with a channel leading to the apex. Lollipopaia minuta differs from Phruensis brunneispora in that th...

  18. Ascochyta blight of chickpea reduced 38% by application of Aureobasidium pullulans (anamorphic Dothioraceae, Dothideales) to post harvest debris.

    Science.gov (United States)

    In 2004-2005, early winter application of suspensions of Aureobasidium pullulans (AuP) conidia to post-harvest chickpea debris resulted in significantly fewer spring-time Ascochyta blight lesions on chickpea test plants relative to controls. Survival of plants adjacent to treated debris was higher t...

  19. New combinations for ergot species described under their anamorphic names by S. Pažoutová and colleagues

    Czech Academy of Sciences Publication Activity Database

    Kolařík, Miroslav

    2015-01-01

    Roč. 67, č. 2 (2015), s. 135-136. ISSN 1211-0981 R&D Projects: GA ČR(CZ) GA13-00788S Institutional support: RVO:61388971 Keywords : Claviceps * Sphacelia * nomenclature Subject RIV: EE - Microbiology, Virology

  20. The occurrence of Pyrenomycetes, Loculoascomycetes and their anamorphs in the plant communities of Babia Góra

    Directory of Open Access Journals (Sweden)

    Andrzej Chlebicki

    2014-08-01

    Full Text Available This paper includes a descriptions of fungi belonging to Pyrenomycetes, Loculoascomycetes,Coelomycetes and Hyphomycetes which were found on Mt. Babia Góra in the years 1983 -1988. Also presented ara comparative studies of thę mycoflora of the selected trees and comparative studies of the vertical ranges of fungi and vascular plants. The investigations show that Pyrenomycetes fungi depend on the plant communities in which they occur.

  1. System and method for ultrafast optical signal detecting via a synchronously coupled anamorphic light pulse encoded laterally

    Science.gov (United States)

    Heebner, John E.

    2010-08-03

    In one general embodiment, a method for ultrafast optical signal detecting is provided. In operation, a first optical input signal is propagated through a first wave guiding layer of a waveguide. Additionally, a second optical input signal is propagated through a second wave guiding layer of the waveguide. Furthermore, an optical control signal is applied to a top of the waveguide, the optical control signal being oriented diagonally relative to the top of the waveguide such that the application is used to influence at least a portion of the first optical input signal propagating through the first wave guiding layer of the waveguide. In addition, the first and the second optical input signals output from the waveguide are combined. Further, the combined optical signals output from the waveguide are detected. In another general embodiment, a system for ultrafast optical signal recording is provided comprising a waveguide including a plurality of wave guiding layers, an optical control source positioned to propagate an optical control signal towards the waveguide in a diagonal orientation relative to a top of the waveguide, at least one optical input source positioned to input an optical input signal into at least a first and a second wave guiding layer of the waveguide, and a detector for detecting at least one interference pattern output from the waveguide, where at least one of the interference patterns results from a combination of the optical input signals input into the first and the second wave guiding layer. Furthermore, propagation of the optical control signal is used to influence at least a portion of the optical input signal propagating through the first wave guiding layer of the waveguide.

  2. Influence of crystallisation anamorphous Co77Si11.5B11.5 alloy on corrosion behavior

    Directory of Open Access Journals (Sweden)

    R. Nowosielski

    2007-01-01

    Full Text Available Purpose: This paper describes crystallization kinetics and its influence on changes of electrochemical behaviorof amorphous, amorphous relaxed and nanocrysalline Co77Si11.5B11.5 alloy.Design/methodology/approach: The following experimental techniques were used: structural research – Xraydiffraction (XRD and electrochemical investigations were carried out by means of an electrochemicalimpedance spectroscopy method.Findings: Heat treatment of amorphous Co77Si11.5B11.5 alloy leads to the formation of the hexagonal α–Cophase in an amorphous matrix at the temperature T = 798 K and this is the first stage of the crystallizationprocess. At the temperature T = 873 K appearance of boride phase Co2B, Co3B and silicates phase Co2Si wasstate. It is the second stage of crystallization. The existence of boride phases was confirmed by after annealing inthe temperature range from 730 K up to 873 K. The secondary crystallization is known to cause grain coarseningof phases and the electrochemical properties. The analysis leads to the conclusion that in view of data obtainedfrom electrochemical tests in 3% NaCl solution, the crystallization process begins at lower temperatures thanresulting from XRD data Co77Si11.5B11.5 alloy.Practical implications: The attractive properties of Co-Si-B alloy are of special interest for basic research on thematerials as well as for their potential applications. Due to their numerous potential application nanocrystallinecobalt based alloys could be work in a wet industrial and marine atmosphere containing sulphide and chlorideions. Electrochemical corrosion can changes structure and magnetic properties of Co-based alloys.Originality/value: It has been shown that thermal annealing at temperature lower than the crystallizationtemperature leads to a significant changes of the initial electrochemical behavior in 3% NaCl solution.

  3. Three novel species of the anamorphic yeast genus Candida in the Candida intermedia clade found in Japan, Thailand and Taiwan.

    Science.gov (United States)

    Nakase, Takashi; Jindamorakot, Sasitorn; Am-In, Somit; Lee, Ching-Fu; Imanishi, Yumi; Limtong, Savitree

    2011-01-01

    Four strains of yeasts isolated in Japan, Thailand and Taiwan were found to represent three novel species of the genus Candida. The three species are located in a clade including Candida tsuchiyae, Candida thailandica and Candida akabanensis in a tree based on the D1/D2 domain sequences of the large subunit rRNA genes but clearly differentiated from these relative species. Three novel species are proposed for these strains, i. e., Candida berkhoutiae sp. nov., for strains ST-49(T) (=BCC 7749(T)=NBRC 106733(T)=CBS 11722(T)) isolated from insect frass in Thailand and SA13S01 (=NBRC 106053) isolated from soil in Taiwan, Candida ezoensis sp. nov., for strain Y07-1601-2(T) (=NBRC 105019(T)=CBS 11753(T)) isolated from forest soil in Japan, and Candida inulinophila sp. nov., for ST-369(T) (=BCC 15081(T)=NBRC 106735(T)=CBS 11725(T)) isolated from an unidentified wild mushroom from Thailand. PMID:21606608

  4. PHYLOGENETIC ANALYSIS IDENTIFIES THE "MEGABACTERIUM" OF BIRDS AS A NOVEL ANAMORPHIC ASCOMYCETOUS YEAST, MACRORHABDUS ORNITHOGASTER GEN. NOV, SP. NOV.

    Science.gov (United States)

    Organisms commonly referred to as megabacteria colonize the gastric isthmus of many species of birds. They are weakly Gram-positive, PAS-positive, and stain with silver stains. Previous studies show that they have a nucleus and a cell wall similar to that seen in fungi. Calcofluor white M2R stain...

  5. 竹黄无性型的多态性及孢子个体发育研究%Polymorphism and Spore Ontogenesis of Anamorph Shiraia banmbusicola

    Institute of Scientific and Technical Information of China (English)

    韩燕峰; 杜文; 梁宗琦; 梁建东; 董旋

    2010-01-01

    为了解竹黄菌的生长发育情况,采用光学显微镜对其无性孢子的类型和产孢方式进行了观察和研究.结果表明:竹黄无性型存在着梭形砖隔状的大分生孢子和椭圆形至近球形的共无性型小分生孢子,并首次报道了大分生孢子形态的多样性和能产生瓶梗孢子及芽生孢子产孢方式的多型现象.

  6. Phylogenetic classification of Pleurothecium and Pleurotheciella gen. nov. and its dactylaria-like anamorph (Sordariomycetes) based on nuclear ribosomal and protein-coding genes

    Czech Academy of Sciences Publication Activity Database

    Réblová, Martina; Seifert, K. A.; Fournier, J.; Štěpánek, Václav

    2012-01-01

    Roč. 104, č. 6 (2012), s. 1299-1314. ISSN 0027-5514 R&D Projects: GA ČR GAP506/12/0038 Institutional support: RVO:67985939 ; RVO:61388971 Keywords : holoblastic denticulate conidiogenesis * life cycles * Steringmatobotrys Subject RIV: EF - Botanics; EE - Microbiology, Virology (MBU-M) Impact factor: 2.110, year: 2012

  7. Fungos anamorfos (hyphomycetes) da Floresta Nacional de Caxiuanã, Pará, Brasil: novos registros para o Neotrópico Anamorphic fungi (hyphomycetes) from Caxiuanã National Forest, Pará, Brazil: new records for the Neotropics

    OpenAIRE

    Josiane Santana Monteiro; Antonio Hernández Gutiérrez; Helen Maria Pontes Sotão

    2010-01-01

    Os hifomicetos são importantes decompositores e recicladores da matéria orgânica morta no ambiente e podem ser importantes patógenos de plantas e animais. Como parte do inventário da diversidade dos fungos sobre palmeiras da Amazônia Oriental, no sítio do Programa de Biodiversidade da Amazônia (PPBIO), na Floresta Nacional de Caxiuanã, Pará, foram identificados cinco novos registros de hifomicetos para o Neotrópico: Camposporium fusisporum Whitton, McKenzie & Hyde; Cylindrocarpon curtum Bugni...

  8. Bi-fluorescence imaging for estimating accurately the nuclear condition of Rhizoctonia spp.

    Science.gov (United States)

    In the absence of perfect state, the number of nuclei in their vegetative hyphae is one of the anamorphic features that separate Rhizoctonia solani from other Rhizoctonia-like fungi. Anamorphs of Rhizoctonia solani are typically multinucleate while the other Rhizoctonia species are binucleate. Howev...

  9. Neopetromyces gen. nov and an overview of teleomorphs of Aspergillus subgenus Circumdati

    DEFF Research Database (Denmark)

    Frisvad, Jens Christian; Samson, R. A.

    2000-01-01

    , because this species differs distinctly from the two other species, P. alliaceus and P. albertensis. Neopetromyces muricatus has flesh-coloured ascostromata and an anamorph in Aspergillus subgenus Circumdati section Circumdati, whereas other Petromyces species have black ascostromata and anamorphs in...

  10. Onychomycosis Due to Emericella quadrilineata

    OpenAIRE

    Gugnani, Harish C.; Vijayan, Vanan K.; Tyagi, Puneet; Sharma, Sonal; Stchigel, Alberto M.; Guarro, Josep

    2004-01-01

    Nondermatophytic fungi are increasingly being reported as etiological agents of onychomycosis. We describe here a case of hand nail infection caused by Emericella quadrilineata (anamorph Aspergillus tetrazonus), a species not so far known to be an etiological agent of onychomycosis.

  11. Neopetromyces gen. nov and an overview of teleomorphs of Aspergillus subgenus Circumdati

    DEFF Research Database (Denmark)

    Frisvad, Jens Christian; Samson, R. A.

    2000-01-01

    Species in the anamorph genus Aspergillus are associated with several teleomorphic genera in the Eurotiales and the most important mycotoxin producers are concentrated in Aspergillus subgenus Circumdati. A new genus, Neopetromyces, is proposed for the recently described Petromyces muricatus, beca...

  12. Asperisporium and Pantospora (Mycosphaerellaceae): epitypifications and phylogenetic placement

    NARCIS (Netherlands)

    Minnis, A.M.; Kennedy, A.H.; Grenier, D.B.; Rehner, S.A.; Bischoff, J.F.

    2012-01-01

    The species-rich family Mycosphaerellaceae contains considerable morphological diversity and includes numerous anamorphic genera, many of which are economically important plant pathogens. Recent revisions and phylogenetic research have resulted in taxonomic instability. Ameliorating this problem req

  13. ALTERATIONS IN B VERSUS C FUMONISIN PRODUCTION BY TRANSFORMATION OF THE FUSARIUM OXYSPORUM FUM8 CODING REGION INTO GIBBERELLA MONILIFORMIS

    Science.gov (United States)

    Fumonisins are mycotoxins that cause several animal diseases, including cancer in rodents. These toxins are produced by the maize pathogen Gibberella moniliformis (anamorph Fusarium verticillioides), several closely related Fusarium species, and at least one isolate of F. oxysporum. G. moniliformi...

  14. Asperisporium and Pantospora (Mycosphaerellaceae): epitypifications and phylogenetic placement

    OpenAIRE

    Minnis, A.M.; Kennedy, A.H.; Grenier, D.B.; Rehner, S.A.; Bischoff, J.F.

    2012-01-01

    The species-rich family Mycosphaerellaceae contains considerable morphological diversity and includes numerous anamorphic genera, many of which are economically important plant pathogens. Recent revisions and phylogenetic research have resulted in taxonomic instability. Ameliorating this problem requires phylogenetic placement of type species of key genera. We present an examination of the type species of the anamorphic Asperisporium and Pantospora. Cultures isolated from recent port intercep...

  15. Biodiversity of endophytic fungi from seven herbaceous medicinal plants of Malnad region, Western Ghats, southern India

    Institute of Scientific and Technical Information of China (English)

    B. Shankar Naik; M. Krishnappa; Y. L. Krishnamurthy

    2014-01-01

    A total of 3611 fungal isolates were recovered from 4200 leaf segments incubated from 7 medicinal herbs during monsoon, winter and summer seasons. These fungal isolates belonged to teleomorphic Asco-mycota (23.5%), anamorphic Ascomycota producing conidiomata (17.4%), anamorphic Ascomycota without conidiomata (46.9%), Zygo-mycota (1.42%) and sterile forms (10.6%). Chaetomium globosum, As-pergillus niger, Aureobasidium pullulans, Curvularia lunata, Fusarium spp., Penicillium spp., Pestalotiopsis spp., Trichoderma viridae, Cladosporium cladosporioides, were frequently isolated from more than one host plant. The number of endophytic isolates was higher in winter than in monsoon and summer seasons.

  16. Crystallization and Preliminary X-ray Diffraction Analysis of the Glucuronoyl Esterase Catalytic Domain from Hypocrea jecorina

    Science.gov (United States)

    The catalytic domain of the glucuronoyl esterase from Hypocrea jecorina (anamorph Trichoderma reesei) was over-expressed, purified, and crystallized by sitting-drop vapor-diffusion method using 1.4 M sodium/potassium phosphate pH 6.9. Crystals had space group P212121 and X-ray diffraction data were...

  17. Disseminated Mycosis in Veiled Chameleons (Chamaeleo calyptratus) Caused by Chamaeleomyces granulomatis, a New Fungus Related to Paecilomyces viridis

    DEFF Research Database (Denmark)

    Sigler, Lynne; Gibas, Connie Fe C.; Kokotovic, Branko; Bertelsen, Mads F.

    2010-01-01

    isolates to be a related undescribed anamorphic species within the family Clavicipitaceae that includes many insect pathogens. Chamaeleomyces granulomatis gen. et sp. nov. is given as the name for the newly described fungus, and P. viridis is transferred to the new genus as Chamaeleomyces viridis comb. nov...

  18. Genetic mapping of 14 avirulence genes in an EU-B04 x 1639 progeny of Venturia inaequalis

    NARCIS (Netherlands)

    Broggini, G.A.L.; Bus, V.G.M.; Parravicini, G.; Kumar, S.; Groenwold, R.; Gessler, C.

    2011-01-01

    Durable resistance to apple scab (Venturia inaequalis (Cke) Wint; anamorph Spilocaea pomi Fries) is one of the major goals of apple (Malus) breeding programs. Since current scab resistance breeding is heavily reliant on genes with gene-for-gene relationships, a good understanding of the genetic basi

  19. Rapid Identification of Pseudallescheria and Scedosporium Strains by Using Rolling Circle Amplification

    OpenAIRE

    Lackner, Michaela; Najafzadeh, Mohammad Javad; Sun, Jiufeng; Lu, Qiaoyun; De Hoog, G. Sybren

    2012-01-01

    The Pseudallescheria boydii complex, comprising environmental pathogens with Scedosporium anamorphs, has recently been subdivided into five main species: Scedosporium dehoogii, S. aurantiacum, Pseudallescheria minutispora, P. apiosperma, and P. boydii, while the validity of some other taxa is being debated. Several Pseudallescheria and Scedosporium species are indicator organisms of pollution in soil and water. Scedosporium dehoogii in particular is enriched in soils contaminated by aliphatic...

  20. Inheritance and localisation of resistance to ¤Mycosphaerella graminicola¤ causing septoria tritici blotch and plant height in the wheat (¤Triticum aestivum¤ L.) genome with DNA markers

    DEFF Research Database (Denmark)

    Eriksen, L.; Borum, F.; Jahoor, A.

    2003-01-01

    Resistance to the disease septoria tritici blotch of wheat (Triticum aestivum L.), caused by the fungus Mycosphaerella graminicola (Fuckel.) J. Schrot in Cohn (anamorph Septoria tritici Roberge in Desmaz.) was investigated in a doubled-haploid (DH) population of a cross between the susceptible...

  1. First localities in Poland of the recently described fungus Cordyceps bifusispora

    Directory of Open Access Journals (Sweden)

    Anna Bujakiewicz

    2014-08-01

    Full Text Available Two localities of the entomopathogenic fungus Cordyceps bifusispora, hitherto not reported from Poland, are characterised by their site conditions and co-occurring macrofungi during the period of the appearance of its stromata. Description of this fungus culture is given and some remarks on the resemblance of its teleomorphs and anamorphs from different collections are discussed.

  2. Phylogeny and taxonomic revision of Thelonectria discophora (Ascomycota, Hypocreales, Nectriaceae) species complex

    Science.gov (United States)

    Thelonectria discophora (Thelonectria, Nectriaceae, Hypocreales) is a conspicuous group of saprobic fungi on decaying plant material, characterized by red perithecia each with a broad mammiform (nipple-like) apex. The anamorphic state is characterized by a cylindrocarpon-like morphology, with 3–5 se...

  3. Liberomyces gen. nov with two new species of endophytic coelomycetes from broadleaf trees

    Czech Academy of Sciences Publication Activity Database

    Pažoutová, Sylvie; Šrůtka, P.; Holuša, J.; Chudíčková, Milada; Kubátová, A.; Kolařík, Miroslav

    2012-01-01

    Roč. 104, č. 1 (2012), s. 198-210. ISSN 0027-5514 R&D Projects: GA ČR GA206/07/0283 Institutional research plan: CEZ:AV0Z50200510 Keywords : anamorph * alnus * phylogeny Subject RIV: EE - Microbiology, Virology Impact factor: 2.110, year: 2012

  4. Wigner Distribution Moments Measured as Intensity Moments in Separable First-Order Optical Systems

    Directory of Open Access Journals (Sweden)

    Tatiana Alieva

    2005-06-01

    Full Text Available It is shown how all global Wigner distribution moments of arbitrary order can be measured as intensity moments in the output plane of an appropriate number of separable first-order optical systems (generally anamorphic ones. The minimum number of such systems that are needed for the determination of these moments is derived.

  5. Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae)

    DEFF Research Database (Denmark)

    Stadler, M.; Fournier, J.; Læssøe, Thomas;

    2010-01-01

    The tropical genus Thamnomyces is characterized by having wiry, black, brittle stromata and early deliquescent asci, lacking an amyloid apical apparatus. Thamnomyces is regarded as a member of the Xylariaceae because the morphology of its ascospores and the anamorphic structures are typical for t...

  6. Phyllosticta species associated with freckle disease of banana

    NARCIS (Netherlands)

    Wong, M.H.; Crous, P.W.; Henderson, J.; Groenewald, J.Z.; Drenth, A.

    2012-01-01

    The identity of the casual agent of freckle disease of banana was investigated. The pathogen is generally referred to in literature under its teleomorphic name, Guignardia musae, or that of its purported anamorph, Phyllosticta musarum. Based on morphological and molecular data from a global set of b

  7. Aspects of sexual reproduction in Mycosphaerella species on wheat and barley : genetic studies on specificity, mapping, and fungicide resistance

    NARCIS (Netherlands)

    Ware, S.B.

    2006-01-01

    Mycosphaerella species are haploid ascomycetes that cause major economic losses in crops that include cereals, citrus fruits, and bananas, among others. Two organisms in this genus are Mycosphaerella graminicola (Fuckel) .I. Schröt (anamorph Sepioria tritici) and Septoriapasserinii. M graminicola is

  8. In Situ Stability of Substrate-Associated Cellulases Studied by DSC

    DEFF Research Database (Denmark)

    Borch, Kim; Cruys-Bagger, Nicolaj; Badino, Silke Flindt; Sørensen, Trine Holst; Windahl, Michael Skovbo; Westh, Peter; Jensen, Kenneth; Alasepp, Kadri

    2014-01-01

    of the transition peak was used as a gauge of the population of native enzyme. Analogous measurements were made for enzymes in pure buffer. Investigations of two cellobiohydrolases, Cel6A and Cel7A, from Trichoderma reesei, which is an anamorph of the fungus Hypocrea jerorina, showed that these...

  9. Optic-electronic systems for measurement the three-dimension angular deformation of axles at the millimeter wave range radiotelescope

    Science.gov (United States)

    Konyakhin, Igor A.; Kopylova, Tatyana V.; Konyakhin, Alexsey I.; Smekhov, Andrey A.

    2013-01-01

    Researches in the millimetre wave range require the high accuracy for position of the mirror components of the radiotelescope. A mirror weight is the cause of the three-dimension angular deformation of the elevation axle and azimuth axle relatively bearings. At result the elevation angle and azimuth angle of a parabolic mirror axis orientation is not equal to the set values. For the measuring roll, pitch and yaw angular deformations the autocollimation system with new type of the reflector are used. Reflector for autocollimation measurements as compositions of the anamorphic prism and special tetrahedral reflector is described. New methods for roll, pitch, yaw angles measuring are discussed. Optical scheme for the measurement system, structure the anamorphic prism and tetrahedral reflector are proposed. Equations for the static characteristic of the measuring system are shown.

  10. Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium

    DEFF Research Database (Denmark)

    Samson, R.A.; Yilmaz, N.; Houbraken, J.;

    2011-01-01

    The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified in Talaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that....... Talaromyces species and most species of Penicillium subgenus Biverticillium sensu Pitt reside in a monophyletic clade distant from species of other subgenera of Penicillium. For detailed phylogenetic analysis of species relationships, the ITS region (incl. 5.8S nrDNA) was sequenced for the available type...... strains and/or representative isolates of Talaromyces and related biverticillate anamorphic species. Extrolite profiles were compiled for all type strains and many supplementary cultures. All evidence supports our conclusions that Penicillium subgenus Biverticillium is distinct from other subgenera in...

  11. Description of Kuraishia piskuri f.a., sp. nov., a new methanol assimilating yeast and transfer of phylogenetically related Candida species to the genera Kuraishia and Nakazawaea as new combinations.

    Science.gov (United States)

    Kurtzman, Cletus P; Robnett, Christie J

    2014-11-01

    The new anamorphic yeast Kuraishia piskuri, f.a., sp. nov. is described for three strains that were isolated from insect frass from trees growing in Florida, USA (type strain, NRRL YB-2544, CBS 13714). Species placement was based on phylogenetic analysis of nuclear gene sequences for the D1/D2 domains of large subunit rRNA, small subunit rRNA, translation elongation factor-1α, and subunits B1 and B2 of RNA polymerase II B. From this analysis, the anamorphic species Candida borneana, Candida cidri, Candida floccosa, Candida hungarica, and Candida ogatae were transferred to the genus Kuraishia as new combinations and Candida anatomiae, Candida ernobii, Candida ishiwadae, Candida laoshanensis, Candida molendini-olei, Candida peltata, Candida pomicola, Candida populi, Candida wickerhamii, and Candida wyomingensis were transferred to the genus Nakazawaea. PMID:25132542

  12. Bori - Pinus spp.: bolezni poganjkov, vej in debla:

    OpenAIRE

    Jurc, Dušan

    2007-01-01

    The most frequent diseases of oaks leaves in Slovenia are presented. Most important is oak mildew (Microsphaera alphitoides), which affects above all pedunculate oak and sessile oak. Accurately are presented anamorph and teleomorph, symtoms of the disease and ecological factors which influence the disease development. Possibilities of chemical control of the disease are described and the most recent findings in connection with biological control, which is based upon use of the fungus Ampelomy...

  13. Hrasti - Quercus spp.: bolezni listja: diseases of leaves: Microsphaera alphitoides, Discula quercina, Tubakia dryin: Oaks - Quercus spp.:

    OpenAIRE

    Jurc, Dušan

    2006-01-01

    The most frequent diseases of oaks leaves in Slovenia are presented. Most important is oak mildew (Microsphaera alphitoides), which affects above all pedunculate oak and sessile oak. Accurately are presented anamorph and teleomorph, symtoms of the disease and ecological factors which influence the disease development. Possibilities of chemical control of the disease are described and the most recent findings in connection with biological control, which is based upon use of the fungus Ampelomy...

  14. Recognition of hypoxyloid and xylarioid Entonaema species and allied Xylaria species from a comparison of holomorphic morphology, HPLC profiles, andribosomal DNA sequences

    DEFF Research Database (Denmark)

    Stadler, M.; Fournier, J.; Læssøe, Thomas; Lechat, C.; Tichy, H.-V.; Piepenbring, M.

    2008-01-01

    The genus Entonaema comprises Xylariaceae with hollow, gelatinous stromata that accumulate liquid. Some of its species, including the type species, appear related to Daldinia from a polyphasic approach, comprising morphological studies, comparisons of ribosomal DNA sequences, and high performance...... appear more promising as chemotaxonomic traits to segregate this genus. As xylaral was also found in Nemania and Stilbohypoxylon spp., while being apparently absent in Hypoxylon and allied genera, it may be a chemotaxonomic marker for Xylariaceae with Geniculosporium-like anamorphs...

  15. Interactions between science and precision engineering

    Science.gov (United States)

    Atkinson, D. P.; McClure, E. R.; Saito, T. T.

    1987-11-01

    The history of scientific progress is intertwined intimately with precision engineering. Precision engineering and science have synergistically interacted in stimulating each other to significant advances. Furthermore, tangible benefits to the quality of human life, through often unexpected industrial applications, occur. High energy lasers, astrophysical telescopes, and anamorphic optics, along with developments in ultraprecision machining and measurement, are discussed as examples of evolution in science and precision engineering. Possibilities for ultimate by-products for mankind's welfare are explored.

  16. De novo Genome Assembly of the Fungal Plant Pathogen Pyrenophora semeniperda

    OpenAIRE

    Soliai, Marcus M.; Meyer, Susan E.; Udall, Joshua A; Elzinga, David E.; Hermansen, Russell A; Bodily, Paul M; Hart, Aaron A.; Coleman, Craig E.

    2014-01-01

    Pyrenophora semeniperda (anamorph Drechslera campulata) is a necrotrophic fungal seed pathogen that has a wide host range within the Poaceae. One of its hosts is cheatgrass (Bromus tectorum), a species exotic to the United States that has invaded natural ecosystems of the Intermountain West. As a natural pathogen of cheatgrass, P. semeniperda has potential as a biocontrol agent due to its effectiveness at killing seeds within the seed bank; however, few genetic resources exist for the fungus....

  17. Hirsutella sinensis mycelium suppresses interleukin-1β and interleukin-18 secretion by inhibiting both canonical and non-canonical inflammasomes

    OpenAIRE

    Huang, Tsung-Teng; Chong, Kowit-Yu; Ojcius, David M; Wu, Yi-Hui; Ko, Yun-Fei; Wu, Cheng-Yeu; Martel, Jan; Lu, Chia-Chen; Lai, Hsin-Chih; Young, John D.

    2013-01-01

    Cordyceps sinensis is a medicinal mushroom used for centuries in Asian countries as a health supplement and tonic. Hirsutella sinensis—the anamorphic, mycelial form of C. sinensis—possesses similar properties, and is increasingly used as a health supplement. Recently, C. sinensis extracts were shown to inhibit the production of the pro-inflammatory cytokine IL-1β in lipopolysaccharide-treated macrophages. However, the molecular mechanism underlying this process has remained unclear. In additi...

  18. Hirsutella sinensis mycelium attenuates bleomycin-induced pulmonary inflammation and fibrosis in vivo

    OpenAIRE

    Tsung-Teng Huang; Hsin-Chih Lai; Yun-Fei Ko; Ojcius, David M; Ying-Wei Lan; Jan Martel; Young, John D.; Kowit-Yu Chong

    2015-01-01

    Hirsutella sinensis mycelium (HSM), the anamorph of Cordyceps sinensis, is a traditional Chinese medicine that has been shown to possess various pharmacological properties. We previously reported that this fungus suppresses interleukin-1β and IL-18 secretion by inhibiting both canonical and non-canonical inflammasomes in human macrophages. However, whether HSM may be used to prevent lung fibrosis and the mechanism underlying this activity remain unclear. Our results show that pretreatment wit...

  19. Rosalia longicorn Rosalia alpina (LINNAEUS, 1758 (Coleoptera: Cerambycidae as a host of the entomopathogenic fungus Cordyceps bassiana LI, LI, HUANG

    Directory of Open Access Journals (Sweden)

    Bartnik Czesław

    2016-06-01

    Full Text Available The paper describes, for the first time, the occurrence of the entomopathogenic fungus Cordyceps bassiana (anamorph: Beauveria bassiana on the imago of the endangered beetle Rosalia longicorn Rosalia alpina from the Low Beskid Mountains (the Carpathians, SE Poland. Furthermore, an isolate of the saprotrophic fungus Hypoxylon fragiforme was obtained as a result of laboratory tests on R. alpina specimens. Relationships between the identified fungi and R. alpina are discussed.

  20. Diversity of Fungal Pathogens Infecting Hordeum L. in Macedonia, Symptoms and Morphology

    OpenAIRE

    Karov, Ilija; Mitrev, Sasa; Kovacevik, Biljana; Kostadinovska, Emilija

    2011-01-01

    During April, May and June 2006, 2007, 2008 and 2009 several plant pathogenic fungi are discovered on barley variety Hordeum vulgare L. Ement. Lam. in Macedonia. The monitoring confirms the presence of Cochliobolus sativus (Ito & Kurib.) Drechsler ex Dastur, Blumeria graminis (Erysiphe graminis DC.), Gaeumannomyces graminis var. tritici (Sacc.) Arx & Oliver, Puccinia hordei Otth., and Ustilago nuda (Jensen) Rostr. The presence of anamorph Septoria tritici Rob ex Desm., which telemorph i...

  1. A anamorfose na composição de Las meninas de Picasso

    Directory of Open Access Journals (Sweden)

    Geraldo Carlos do Nascimento

    2000-11-01

    Full Text Available The reading that Picasso has done of Velázquez’s portrait Las meninas demonstrates evidences of a process of distortions which is shown on the fifty-eight canvases that he had painted inspired in the abovementioned masterpiece. This text intends to mark that those distortions, which - according to Jacques Lacan - are typical from an anamorphics process, went deeper as Picasso moved away from the original and allowed his own enunciation to come out.

  2. El Escudete de la aceituna II: caracterización morfológica, fisiológica y patogénica del agente causal

    OpenAIRE

    Trapero Casas, Antonio; González, N.

    2006-01-01

    Morphological observations on the causal agent of the Dalmatian disease of olive fruits in Andalucia, southern Spain, confirm its identification as Camarosporium dalmaticum. This species was identified in Greece and it has been recently reclassified as Botryosphaeria dothidea (anamorph Fusicoccum aesculi). Physiological characterization of the pathogen demonstrated that the fungus has a wide range of temperatures for growth and germination of conidia. The optimum temperature was 26ºC for grow...

  3. Population Structure of the Sour Rot Pathogens Galactomyces citri-aurantii and G. geotrichum and Evaluation of Sterol Demethylation Inhibitors for Postharvest Management of Citrus Decays

    OpenAIRE

    McKay, Alistair Hartley

    2011-01-01

    Sour rot of citrus caused by Galactomyces citri-aurantii (anamorph: Geotrichum citri-aurantii (Ferraris) Butler) is an important postharvest disease that affects all varieties of citrus fruit grown in California and is particularly prevalent in the lemon industry since the fruit is stored at approximately 12°C and 95% relative humidity. The postharvest fungicides currently registered to manage green mold caused by Penicillium digitatum including imazalil, thiabendazole, as well as azoxystrobi...

  4. Adhesion of Macroconidia to the Plant Surface and Virulence of Nectria haematococca

    OpenAIRE

    Jones, Margaret J.; Epstein, Lynn

    1990-01-01

    To study spore attachment of the cucurbit pathogen Nectria haematococca (anamorph, Fusarium solani f. sp. cucurbitae), mutants with adhesion-deficient macroconidia were isolated. The adhesion-deficient mutants were selected after treatment with N-methyl-N′ -nitro-N-nitrosoguanidine followed by repeated enrichment for macroconidia which did not attach to polystyrene. Two independently derived mutants produced macroconidia with an approximately 50% reduction in attachment to polystyrene and to ...

  5. Gnomonia Leptostyla (Fr.) Ces. et de Not. causer of walnut anthracnose in the east part of the Republic of Macedonia

    OpenAIRE

    Karov, Ilija; Mitrev, Sasa; Kovacevik, Biljana; Stoyanova, Zornitsa; Kostadinovska, Emilija; Rodeva, Rossitza

    2014-01-01

    The anthracnose is one of the most destructive diseases of walnut(Juglans regia L.) worldwide. The causal agent is an ascomycetous fungus(Gnomonia leptostyla (Fr.) Ces. et de Not.) (anamorph Marssonina juglandis Lib.) Magn.). In the last years symptoms of the disease were observed with increasing frequency in Macedonia. The leaves, nuts, and occasionally shoots were affected. Leaf spots were dark brown, more or less circular and often coalesced forming larger dead areas. Black minute fruit...

  6. Unravelling Mycosphaerella: do you believe in genera?

    Science.gov (United States)

    Crous, P W; Summerell, B A; Carnegie, A J; Wingfield, M J; Hunter, G C; Burgess, T I; Andjic, V; Barber, P A; Groenewald, J Z

    2009-12-01

    Many fungal genera have been defined based on single characters considered to be informative at the generic level. In addition, many unrelated taxa have been aggregated in genera because they shared apparently similar morphological characters arising from adaptation to similar niches and convergent evolution. This problem is aptly illustrated in Mycosphaerella. In its broadest definition, this genus of mainly leaf infecting fungi incorporates more than 30 form genera that share similar phenotypic characters mostly associated with structures produced on plant tissue or in culture. DNA sequence data derived from the LSU gene in the present study distinguish several clades and families in what has hitherto been considered to represent the Mycosphaerellaceae. In some cases, these clades represent recognisable monophyletic lineages linked to well circumscribed anamorphs. This association is complicated, however, by the fact that morphologically similar form genera are scattered throughout the order (Capnodiales), and for some species more than one morph is expressed depending on cultural conditions and media employed for cultivation. The present study shows that Mycosphaerella s.s. should best be limited to taxa with Ramularia anamorphs, with other well defined clades in the Mycosphaerellaceae representing Cercospora, Cercosporella, Dothistroma, Lecanosticta, Phaeophleospora, Polythrincium, Pseudocercospora, Ramulispora, Septoria and Sonderhenia. The genus Teratosphaeria accommodates taxa with Kirramyces anamorphs, while other clades supported in the Teratosphaeriaceae include Baudoinea, Capnobotryella, Devriesia, Penidiella, Phaeothecoidea, Readeriella, Staninwardia and Stenella. The genus Schizothyrium with Zygophiala anamorphs is supported as belonging to the Schizothyriaceae, while Dissoconium and Ramichloridium appear to represent a distinct family. Several clades remain unresolved due to limited sampling. Mycosphaerella, which has hitherto been used as a term of

  7. Zoom lens compensator for a cylindrical window in laser anemometer uses

    Science.gov (United States)

    Wernet, Mark P.; Seasholtz, Richard G.

    1987-01-01

    In laser anemometer systems, the flow fields under study are typically enclosed by a window. Aberration of a flat window can be corrected by a shift of the object distance. A zooming correction lens elimates the astigmatism caused by a thick cylindrical window and yields diffraction-limited performance for a monochromatic laser anemometer system. The effects of residual anamorphic distortion are discussed, and procedures for correcting these effects are presented.

  8. Disseminated Microascus cirrosus infection in pediatric bone marrow transplant recipient.

    OpenAIRE

    Krisher, K K; Holdridge, N B; M. M. Mustafa; Rinaldi, M. G.; McGough, D A

    1995-01-01

    Microascus cirrosus Curzi and its associated anamorphic state, Scopulariopsis, were recovered from the cutaneous lesion of a 12-year-old male who had undergone an autologous bone marrow transplantation for acute myelogenous leukemia. Histopathology sections from the biopsied lesion demonstrated septate hyphae consistent with a fungal etiology. Radiographic studies of the lungs subsequent to progression of the lesion revealed a consolidation in the right upper lobe suggesting a primary focus o...

  9. Transcription of Genes in the Biosynthetic Pathway for Fumonisin Mycotoxins Is Epigenetically and Differentially Regulated in the Fungal Maize Pathogen Fusarium verticillioides

    OpenAIRE

    Visentin, I.; Montis, V.; Doll, K.; Alabouvette, C.; Tamietti, G.; Karlovsky, P.; Cardinale, F.

    2011-01-01

    When the fungal pathogen Gibberella moniliformis (anamorph, Fusarium verticillioides) colonizes maize and maize-based products, it produces class B fumonisin (FB) mycotoxins, which are a significant threat to human and animal health. FB biosynthetic enzymes and accessory proteins are encoded by a set of clustered and cotranscribed genes collectively named FUM, whose molecular regulation is beginning to be unraveled by researchers. FB accumulation correlates with the amount of transcripts from...

  10. Phytotoxic metabolites produced by fungi involvedin cork oak decline

    OpenAIRE

    Maddau, Lucia; Spanu, Emanuela; Linaleddu, B. T.; Franceschini, Antonio; Evidente, Antonio

    2008-01-01

    Diplodia corticola, anamorph of Botryosphaeria corticola Phillips, Alves et Luque, and Biscognauxia mediterranea (De Not.) O. Kuntze (= Hypoxylon mediterraneum) have often been associated with serious decline phenomena, which have been affecting the cork oak forest in Italy and other Mediterranean countries for several years. Diplodia corticola is widespread in Sardinian oak forests, and can affect plants of different ages, inducing symptoms which include dieback, cankers and v...

  11. Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data

    OpenAIRE

    Wang, Xuli; Zang, Rui; Yin, Zhiyuan; Kang, Zhensheng; Huang, Lili

    2014-01-01

    Fungal diseases are posing tremendous threats to global economy and food safety. Among them, Valsa canker, caused by fungi of Valsa and their Cytospora anamorphs, has been a serious threat to fruit and forest trees and is one of the most destructive diseases of apple in East Asia, particularly. Accurate and robust delimitation of pathogen species is not only essential for the development of effective disease control programs, but also will advance our understanding of the emergence of plant d...

  12. Chemical characterization of bioactive compounds from the endophytic fungus Diaporthe helianthi isolated from Luehea divaricata

    OpenAIRE

    Specian, Vânia; Sarragiotto, Maria Helena; Pamphile, João Alencar; Edmar CLEMENTE

    2012-01-01

    Endophytic microorganisms, defined as fungi or bacteria that colonize the interior of plants without causing any immediate negative effects or damages, have reciprocal relationships with host plants. In some cases their presence is beneficial to the host due to the synthesis of bioactive compounds, among which several alcohols, esters, ketones and others that may react with other compounds and may be lethal to pathogenic microorganisms. Diaporthe helianthi (Phomopsis helianthi in its anamorph...

  13. Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype

    OpenAIRE

    Woudenberg, J.H.C.; Aveskamp, M.M.; Gruyter, de, J.; Spiers, A.G.; Crous, P.W.

    2009-01-01

    The fungal pathogen Phoma clematidina is used as a biological agent to control the invasive plant species Clematis vitalba in New Zealand. Research conducted on P. clematidina as a potential biocontrol agent against C. vitalba, led to the discovery of two perithecial-forming strains. To assess the diversity of P. clematidina and to clarify the teleomorph-anamorph relationship, phylogenetic analyses of 18 P. clematidina strains, reference strains representing the Phoma sections in the Didymell...

  14. Autofluorescence of grape berries following Botrytis cinerea infection

    OpenAIRE

    Belanger, M.C.; Roger, J.M.; Cartolaro, P.; Fermaud, M.

    2011-01-01

    Gray mold is caused by Botrytis cinerea (anamorph of an ascomycete fungus) infecting over 200 plant species worldwide and causing tremendous harvest losses in vineyards. Even though all grapevine cultivars (Vitis vinfera L.) are susceptible to the disease, defense mechanisms are induced to counteract or slow down infection and colonization by the pathogen. One of the key inducible defense molecule is resveratrol, a blue fluorescent stilbenic compound. Considering early fungal detection as a c...

  15. BZcon1, a SANT/Myb-Type Gene Involved in the Conidiation of Cochliobolus carbonum

    OpenAIRE

    Zhang, Jun-Xiang; Wu, Yi-Xin; Ho, Honhing; Zhang, Hao; He, Peng-fei; He, Yue-qiu

    2014-01-01

    The fungal pathogen Cochliobolus carbonum (anamorph, Bipolaris zeicola) causes Northern Leaf Spot, leading to a ubiquitous and devastating foliar disease of corn in Yunnan Province, China. Asexual spores (conidia) play a major role in both epidemics and pathogenesis of Northern Leaf Spot, but the molecular mechanism of conidiation in C. carbonum has remained elusive. Here, using a map-based cloning strategy, we cloned a single dominant gene, designated as BZcon1 (for Bipolaris zeicola conidia...

  16. Phylogeny and pathogenicity of Fusarium spp. isolated from greenhouse melon soil in Liaoning Province

    OpenAIRE

    Zhao, Baixia; Yan, Jianfang; Zhang, Shuo; Liu, Xian; Gao, Zenggui

    2013-01-01

    Fungi of the Fusarium oxysporum are widely distributed around the world in all types of soils, and they are all anamorphic species. In order to investigate the relationships and differences among Fusarium spp., 25 Fusarium spp. were isolated from greenhouse melon soils in Liaoning Province, China. With these 25 strains, three positive control Fusarium strains were analyzed using universally primed PCR (UP-PCR). Seventy-three bands appeared after amplification using 6 primers, and 66 of these ...

  17. Michelson interferometer null may confirm transverse Doppler Effect

    CERN Document Server

    Woodruff, Robert A

    2014-01-01

    We analyze fringe formation within Michelson-like experiments as viewed by relativistic inertial observers. Our analysis differs from previous work because we include optical misalignment of the beamsplitter of the interferometer due to the anamorphic geometry of relativistic Lorentz contraction. We conclude that inertial frame equivalence of Michelson-like experiments provide verification of the transverse Doppler Effect and exclude any model incorporating the relativistic Lorentz contraction effect.

  18. 安徽的虫草及其相关真菌Ⅱ%The genus Cordyceps and its allies from Anhui Ⅱ

    Institute of Scientific and Technical Information of China (English)

    仇飞; 张琪; 李春如; Spatafora Joey; 樊美珍; 李增智

    2012-01-01

    In this paper, 20 species of Cordyceps and its allies from some nature preserves in Anhui Province were reported as follows: Cordyceps brongniartii and its anamorph Beauveria brongniartii, C. cylindrica and its anamorph Nomuraea atypicola, Metacordyceps guniujiangensis and its anamorph Metarhizium aff. cylindro-sporum, Ophiocordyceps heteropoda var. langyashanensis and its anamorph Hirsutella heteropoda, O. mel-olonthae, O. odonatae, O. gryllotalpae, C, kusanagiensis and so on. Among them, O. melolonthae is a new record to China mainland and a minor error in original description of O. odonatae was revised. Specimens examined are deposited in Research Center on Entomogenous Fungi, Anhui Agricultural University (RCEFAAU).%对安徽省分布的布氏虫草Cordyceps brongniartii及其无性型布氏白僵菌Beauveria brongniartii、柱形虫草Cordyceps cylindrica及其无性型紫色野村菌Nomuraea atypicola、牯牛降异虫草Metacordyceps guniujiangensis及其无性型柱孢绿僵菌近似种Metarhizium aff.cylindrosporum、根足线虫草琅琊山变种Ophiocordyceps heteropoda var.langyashanensis及其无性型根足被毛孢Hirsutella heteropoda、腮金龟线虫草O.melolonthae、蜻蜓线虫草O.odonatae、蝼蛄线虫草(朝鲜虫草)O.gryllotalpae和草剃虫草Cordyceps kusanagiensis等20个虫草及其相关真菌种类重新整理发表,其中腮金龟虫草为中国大陆首次报道;同时,纠正了蜻蜓线虫草原始描述中的错误.鉴定标本保存在安徽农业大学虫生真菌研究中心(RCEFAAU).

  19. Scytalidium parasiticum sp. nov., a New Species Parasitizing on Ganoderma boninense Isolated from Oil Palm in Peninsular Malaysia

    OpenAIRE

    Goh, Yit Kheng; Goh, Teik Khiang; Marzuki, Nurul Fadhilah; Tung, Hun Jiat; Goh, You Keng; Goh, Kah Joo

    2015-01-01

    A mycoparasite, Scytalidium parasiticum sp. nov., isolated from the basidiomata of Ganoderma boninense causing basal stem rot of oil palm in Johor, Malaysia, is described and illustrated. It is distinct from other Scytalidium species in having smaller asci and ascospores (teleomorphic stage), longer arthroconidia (anamorphic stage), hyaline to yellowish chlamydospores, and producing a fluorescent pigment. The phylogenetic position of S. parasiticum was determined by sequence analyses of the i...

  20. Four species of Zygophiala (Schizothyriaceae, Capnodiales) are associated with the sooty blotch and flyspeck complex on apple

    OpenAIRE

    Batzer, J.C.; Mercedes Diaz Arias, M.; Harrington, T.C.; Gleason, M.L.; Groenewald, J.Z.; Crous, P.W.

    2008-01-01

    Sooty blotch and flyspeck (SBFS) is a complex of fungi that cause late-season blemishes of apple and pear fruit that cosmetically damage the cuticle, which result in fruit that are unacceptable to consumers. Previous studies reported that a single, wide-host-range species, Schizothyrium pomi (presumed anamorph Zygophiala jamaicensis), caused flyspeck on apple. In the present study we compared morphology and DNA phylogeny (ITS, LSU) of 139 fungal strains isolated from flyspeck signs from 39 ap...

  1. A versatile toolkit for high throughput functional genomics with Trichoderma reesei

    OpenAIRE

    Schuster André; Bruno Kenneth S; Collett James R; Baker Scott E; Seiboth Bernhard; Kubicek Christian P; Schmoll Monika

    2012-01-01

    Abstract Background The ascomycete fungus, Trichoderma reesei (anamorph of Hypocrea jecorina), represents a biotechnological workhorse and is currently one of the most proficient cellulase producers. While strain improvement was traditionally accomplished by random mutagenesis, a detailed understanding of cellulase regulation can only be gained using recombinant technologies. Results Aiming at high efficiency and high throughput methods, we present here a construction kit for gene knock out i...

  2. Molecular evidence that the asexual industrial fungus Trichoderma reesei is a clonal derivative of the ascomycete Hypocrea jecorina.

    OpenAIRE

    Kuhls, K; Lieckfeldt, E; Samuels, G. J.; Kovacs, W; Meyer, W.; Petrini, O; Gams, W.; T. Börner; Kubicek, C P

    1996-01-01

    The relationship of the important cellulase producing asexual fungus Trichoderma reesei to its putative teleomorphic (sexual) ancestor Hypocrea jecorina and other species of the Trichoderma sect. Longibrachiatum was studied by PCR-fingerprinting and sequence analyses of the nuclear ribosomal DNA region containing the internal transcribed spacers (ITS-1 and ITS-2) and the 5.8S rRNA gene. The differences in the corresponding ITS sequences allowed a grouping of anamorphic (asexual) species of Tr...

  3. Novel aspects in the life cycle and biotrophic interactions in Pezizomycetes (Ascomycota, Fungi).

    Science.gov (United States)

    Tedersoo, Leho; Arnold, A Elizabeth; Hansen, Karen

    2013-03-01

    The ascomycete class Pezizomycetes (single order Pezizales)is known for its cup-shaped fruit bodies and the evolution of edible truffles and morels, but little is known about the ontogeny and ecology of this large and ecologically diverse fungal group. In this issue of Molecular Ecology, Healy et al. (2013) make a great leap forward by describing and identifying asexual, anamorphic structures that produce mitotic spores in many ectomycorrhiza-forming truffle and nontruffle species on soil surfaces worldwide(Fig. 1). Although such anamorphic forms have been reported sporadically from certain ectomycorrhizal and saprotrophic Pezizomycetes (e.g. Warcup 1990), Healy et al. (2013) demonstrate that these terricolous asexual forms are both taxonomically and geographically more widespread and, in fact, much more common than previously understood. We anticipate that deeper insight into other substrates, provided by molecular analyses of materials such as dead wood and seeds, is likely to reveal numerous anamorphs of saprotrophic and pathogenic Pezizomycetes as well (see Marek et al. 2009). PMID:23599958

  4. Wigner distribution moments in fractional Fourier transform systems.

    Science.gov (United States)

    Bastiaans, Martin J; Alieva, Tatiana

    2002-09-01

    It is shown how all global Wigner distribution moments of arbitrary order in the output plane of a (generally anamorphic) two-dimensional fractional Fourier transform system can be expressed in terms of the moments in the input plane. Since Wigner distribution moments are identical to derivatives of the ambiguity function at the origin, a similar relation holds for these derivatives. The general input-output relationship is then broken down into a number of rotation-type input-output relationships between certain combinations of moments. It is shown how the Wigner distribution moments (or ambiguity function derivatives) can be measured as intensity moments in the output planes of a set of appropriate fractional Fourier transform systems and thus be derived from the corresponding fractional power spectra. The minimum number of (anamorphic) fractional power spectra that are needed for the determination of these moments is derived. As an important by-product we get a number of moment combinations that are invariant under (anamorphic) fractional Fourier transformation. PMID:12216870

  5. Polyphasic taxonomy of Aspergillus section Fumigati and its teleomorph Neosartorya

    Directory of Open Access Journals (Sweden)

    S.W. Peterson

    2007-12-01

    Full Text Available The taxonomy of Aspergillus section Fumigati with its teleomorph genus Neosartorya is revised. The species concept is based on phenotypic (morphology and extrolite profiles and molecular (β-tubulin and calmodulin gene sequences characters in a polyphasic approach. Four new taxa are proposed: N. australensis N. ferenczii, N. papuaensis and N. warcupii. All newly described and accepted species are illustrated. The section consists of 33 taxa: 10 strictly anamorphic Aspergillus species and 23 Neosartorya species. Four other Neosartorya species described previously were not available for this monograph, and consequently are relegated to the category of doubtful species

  6. Structural insights into the inhibition of cellobiohydrolase Cel7A by xylo‐oligosaccharides

    DEFF Research Database (Denmark)

    Momeni, Majid Haddad; Ubhayasekera, Wimal; Sandgren, Mats;

    2015-01-01

    enzymes is susceptible to inhibition by compounds liberated by physico‐chemical pre‐treatment if the biomass is kept unwashed. Xylan and xylo‐oligosaccharides (XOS) have been proposed to play a key role in inhibition of cellobiohydrolases of glycoside hydrolase family 7. To elucidate the mechanism behind......The filamentous fungus Hypocrea jecorina (anamorph of Trichoderma reesei) is the predominant source of enzymes for industrial saccharification of lignocellulose biomass. The major enzyme, cellobiohydrolase Cel7A, constitutes nearly half of the total protein in the secretome. The performance of such...

  7. Moments of the Wigner distribution of rotationally symmetric partially coherent light.

    Science.gov (United States)

    Bastiaans, Martin J; Alieva, Tatiana

    2003-12-15

    The Wigner distribution of rotationally symmetric partially coherent light is considered, and the constraints for its moments are derived. Although all odd-order moments vanish, these constraints lead to a drastic reduction in the number of parameters that we need to describe all even-order moments: whereas in general we have (N + 1)(N + 2)(N + 3)/6 different moments of order N, this number reduces to (1 + N/2)2 in the case of rotational symmetry. A way to measure the moments as intensity moments in the output planes of (generally anamorphic) fractional Fourier-transform systems is presented. PMID:14690109

  8. Beam profile shaping for laser radars that use detector arrays.

    Science.gov (United States)

    Veldkamp, W B; Kastner, C J

    1982-01-15

    The beam shaper we developed shapes the transmit beam of a CO(2) laser radar that uses a linear detector array. It consists of a diffraction grating and an anamorphic prism beam compressor and produces a stretched profile that efficiently and uniformly illuminates the far-field footprint of the detector array. The diffraction grating phase modulates the near field or the laser beam to generate a far-field flattop intensity profile, whereas the compressor produces the necessary profile eccentricity. We have achieved conversion efficiencies in the 70-90% range. PMID:20372453

  9. Scytalidium parasiticum sp. nov., a New Species Parasitizing on Ganoderma boninense Isolated from Oil Palm in Peninsular Malaysia.

    Science.gov (United States)

    Goh, Yit Kheng; Goh, Teik Khiang; Marzuki, Nurul Fadhilah; Tung, Hun Jiat; Goh, You Keng; Goh, Kah Joo

    2015-06-01

    A mycoparasite, Scytalidium parasiticum sp. nov., isolated from the basidiomata of Ganoderma boninense causing basal stem rot of oil palm in Johor, Malaysia, is described and illustrated. It is distinct from other Scytalidium species in having smaller asci and ascospores (teleomorphic stage), longer arthroconidia (anamorphic stage), hyaline to yellowish chlamydospores, and producing a fluorescent pigment. The phylogenetic position of S. parasiticum was determined by sequence analyses of the internal transcribed spacers and the small-subunit ribosomal RNA gene regions. A key to identify Scytalidium species with teleomorphic stage is provided. PMID:26190917

  10. [Characteristic of the yeast isolated from patients with leukaemia].

    Science.gov (United States)

    Fedorovskaia, E A; Rybal'skaia, A P; Skachkova, N K; Mel'nik, E A; Nemirovskaia, L N; Nagornaia, S S; Babich, T V; Polishchuk, L V

    2008-01-01

    It has been shown that biotopes of upper respiratory system and intestine were contaminated with yeast in 44.6% of patients with leukaemia (of 112 examined ones). Their quantity exceeds the boundary value for practically healthy people and is > or = 10(2) KOE/ml in the nasal activity and fauces and leucemia the mycotic complications are mainly caused by anamorphous yeast of ascomycetic affinity. Candida albicans, as well as C. glabrata, C. rugosa and Candida sp. play the leading role. The Candida genus species are mainly sensitive to amphotericine B, clotrisamol and nistatin. PMID:19044007

  11. Small Angle Neutron Scattering Reveals pH-dependent Conformational Changes in Trichoderma reesei Cellobiohydrolase I: IMPLICATIONS FOR ENZYMATIC ACTIVITY*

    OpenAIRE

    Pingali, Sai Venkatesh; O'Neill, Hugh M.; McGaughey, Joseph; Urban, Volker S.; Rempe, Caroline S.; Petridis, Loukas; Jeremy C Smith; Evans, Barbara R.; Heller, William T.

    2011-01-01

    Cellobiohydrolase I (Cel7A) of the fungus Trichoderma reesei (now classified as an anamorph of Hypocrea jecorina) hydrolyzes crystalline cellulose to soluble sugars, making it of key interest for producing fermentable sugars from biomass for biofuel production. The activity of the enzyme is pH-dependent, with its highest activity occurring at pH 4–5. To probe the response of the solution structure of Cel7A to changes in pH, we measured small angle neutron scattering of it in a series of solut...

  12. Asperisporium and Pantospora (Mycosphaerellaceae): epitypifications and phylogenetic placement.

    Science.gov (United States)

    Minnis, A M; Kennedy, A H; Grenier, D B; Rehner, S A; Bischoff, J F

    2011-12-01

    The species-rich family Mycosphaerellaceae contains considerable morphological diversity and includes numerous anamorphic genera, many of which are economically important plant pathogens. Recent revisions and phylogenetic research have resulted in taxonomic instability. Ameliorating this problem requires phylogenetic placement of type species of key genera. We present an examination of the type species of the anamorphic Asperisporium and Pantospora. Cultures isolated from recent port interceptions were studied and described, and morphological studies were made of historical and new herbarium specimens. DNA sequence data from the ITS region and nLSU were generated from these type species, analysed phylogenetically, placed into an evolutionary context within Mycosphaerellaceae, and compared to existing phylogenies. Epitype specimens associated with living cultures and DNA sequence data are designated herein. Asperisporium caricae, the type of Asperisporium and cause of a leaf and fruit spot disease of papaya, is closely related to several species of Passalora including P. brachycarpa. The status of Asperisporium as a potential generic synonym of Passalora remains unclear. The monotypic genus Pantospora, typified by the synnematous Pantospora guazumae, is not included in Pseudocercospora sensu stricto or sensu lato. Rather, it represents a distinct lineage in the Mycosphaerellaceae in an unresolved position near Mycosphaerella microsora. PMID:22403473

  13. 木霉菌属的定义及其属下分类%Delineation of the genus Trichoderma and its sub-genus division

    Institute of Scientific and Technical Information of China (English)

    杨合同; 唐文华; 徐砚珂; 王加宁; 姚碗生

    2002-01-01

    本文总结了木霉菌属的界定以及木霉菌属的属下分类.Bissett等人把木霉菌属(Trichoderma)分为5个组,共31个种.Hypocreanum组包括一个种,即T.lactea;Longibrachiatum组包括4个种,即T.longibrachiatum, T. citroviride, T. pseudokoingii 和 T. parceramosum; Saturnisporum 组包括2个种, 即T. saturnisporum 和 T. ghaneuse ; Pach ybasium 组包括20个种, 即T. crassum , T. croceum , T. f asciculatum , T. fertile, T. flavo f uscum , Trichoderma anamorph of Hypocrea gelatinosa, T. hamatum, T. harzianum, T. longipilis, T. minutisporum, T. oblongisporum, T. polysporum, T. pubescens, Trichoderma anamorph of Hypocrea semiorbis, T. spirale,T. strictipilis, T. striggosum, T. tomentosum 和 T. virens; Trichoderma 组包括4个种, 即T. viride,T.aureoviride,T.koningii和T.atroviride.以上是木霉菌属目前最完整的分类体系.

  14. Chirped microlens arrays for diode laser circularization and beam expansion

    Science.gov (United States)

    Schreiber, Peter; Dannberg, Peter; Hoefer, Bernd; Beckert, Erik

    2005-08-01

    Single-mode diode lasers are well-established light sources for a huge number of applications but suffer from astigmatism, beam ellipticity and large manufacturing tolerances of beam parameters. To compensate for these shortcomings, various approaches like anamorphic prism pairs and cylindrical telescopes for circularization as well as variable beam expanders based on zoomed telescopes for precise adjustment of output beam parameters have been employed in the past. The presented new approach for both beam circularization and expansion is based on the use of microlens arrays with chirped focal length: Selection of lenslets of crossed cylindrical microlens arrays as part of an anamorphic telescope enables circularization, astigmatism correction and divergence tolerance compensation of diode lasers simultaneously. Another promising application of chirped spherical lens array telescopes is stepwise variable beam expansion for circular laser beams of fiber or solid-state lasers. In this article we describe design and manufacturing of beam shaping systems with chirped microlens arrays fabricated by polymer-on-glass replication of reflow lenses. A miniaturized diode laser module with beam circularization and astigmatism correction assembled on a structured ceramics motherboard and a modulated RGB laser-source for photofinishing applications equipped with both cylindrical and spherical chirped lens arrays demonstrate the feasibility of the proposed system design approach.

  15. Co-existence and interaction between myxomycetes and other organisms in shared niches

    Directory of Open Access Journals (Sweden)

    Irina O. Dudka

    2013-12-01

    Full Text Available The ecology of myxomycetes co-existing with the Latridiidae (Coleoptera, bryophytes and ascomycetous, basidiomycetous and anamorphic fungi were studied in Crimea and at different locations on the left bank of Ukraine. Results from the left bank indicate that the Latridiidae feed on myxomycetes. Colonies of the most common 13 myxomycete species (which included Stemonitis axifera (Bull. Macbr., S. fusca Roth, S. splendens Rost., Fuligo septica (L. Wigg. and Mucilago crustacea Wigg. were inhabited by 5 species of the Latridiidae. Myxomycete spores were present in guts of 19 of the 25 beetle specimens investigated. Beetles Latridius hirtus, Enicmus rugosus and E fungicola seem to be obligate myxomycete feeders, while Corticarina truncatella was clearly facultative. 13 species of myxomycetes were recorded on 9 species of moss and 3 species of liverwort developing on decaying wood or bark in the Crimean Nature Reserve. Relations between myxomycetes and bryophytes on woody substrata are spatial rather than trophic, and are possibly regulated by specific microclimatic conditions inside bryophyte thallomes. 69 species of myxomycetes were found co-existing with 36 species of ascomycetes, 21 species of basidiomycetes and 9 species of anamorphic fungi in the Crimean Nature Reserve. Associations formed by myxomycetes and fungi on different woody substrata are analyzed.

  16. Efficient Coupler for a Bessel Beam Dispersive Element

    Science.gov (United States)

    Savchenkov, Anatoliy; Iltchenko, Vladimir; Matsko, Andrey; Le, Thanh; Yu, nan; Maleki, Lute

    2008-01-01

    A document discusses overcoming efficient optical coupling to high orbital momentum modes by slightly bending the taper dispersive element. This little shape distortion is not enough to scramble the modes, but it allows the use of regular, free-beam prism coupling, fiber coupling, or planar fiber on-chip coupling with, ultimately, 100 percent efficiency. The Bessel-beam waveguide is bent near the contact with the coupler, or a curved coupler is used. In this case, every Bessel-beam mode can be successfully coupled to a collimated Gaussian beam. Recently developed Bessel-beam waveguides allow long optical delay and very high dispersion. Delay values may vary from nanoseconds to microseconds, and dispersion promises to be at 100 s/nm. Optical setup consisted of a red laser, an anamorphic prism pair, two prism couplers, and a bent, single-mode fiber attached to prisms. The coupling rate increased substantially and corresponded to the value determined by the anamorphic prism pair.

  17. [Morphologic and molecular characterization of Phomopsis longicolla(teleomorph unknown: Diaporthales) from tempered and subtropical regions of Argentina].

    Science.gov (United States)

    Hernández, Facundo E; Pioli, Rosanna N; Peruzzo, Alejandra M; Formento, Ángela N; Pratta, Guillermo R

    2015-09-01

    Diaporthe (teleomorpho)-Phomopsis - (anamorph) (DP) is a fungal group of great genetic diversity with over 900 species associated to a wide host range that includes cultivated and uncultivated species, forest, fruit trees and weeds. DP isolates are hemibiotrophs and have different sources of primary inoculum as stubble and seeds to restart cycles of parasitism - saprophytism. They colonize host tissues from early plant stages and establish different nutritional relationships, acting as endophytic and necrotrophic fungi. The plasticity of the Phomopsis genus has favored its expansion to different agro-ecosystems and various hosts constituting an epidemiological risk. The objective was to validate the identity and evaluate the biological relationships among 12 isolates of P longicolla and D. phaseolorum var. sojae (anamorph P phaseoli var. sojae) obtained in different tempered and subtropical agro-environments of Argentina, in order to analyze the variability and strategies for preserving fungal biodiversity. Macromorphological attributes (such as texture and color of colonies, stroma shape and distribution, pycnidia and perythecia shape and distribution) and micro-morphological characteristics (such as size and shape of conidia, asci and ascospores) allowed identifying three new isolates as P longicolla. A complementary molecular analysis was also made to overcome the limitations derived from the morphological analysis, thus the AFP.8413 isolate was finally identified as P longicolla. The molecular characterization was useful to identify the evaluated isolates and to group them in four taxa of the Diaporthe-Phomopsis complex: ten isolates were included in P. longicolla, one isolate was included in D. phaseolorum var. sojae (anamorph P. phaseoli var. sojae), one isolate was identified as D. phaseolorum var. caulivora and two isolates were included in D. phaseolorum var. meridionalis. The use of phenotipic and molecular tools have contributed to an accurate

  18. New design approaches for a very high resolution spectrograph for the combined focus of the VLT

    Science.gov (United States)

    Spanò, Paolo; Delabre, Bernard; Dekker, Hans; Avila, Gerardo

    2008-07-01

    To achieve very-high spectral resolutions (R>100,000) with large telescopes (D>8m) new optical solutions have been investigated in the context of the ESPRESSO project for the VLT, starting from the initial design of CODEX for the E-ELT. ESPRESSO is a high-efficiency, high-stability, high-resolution visible spectrograph for the combined Coude focus of the VLT. Among these new solutions, we can mention: free-form optics, used to design an all-mirror anamorphic pupil slicer, large mosaic echelle grating, slanted VPH gratings, super-corrected atmospheric dispersion corrector. All these solutions have been usefully applied to design the spectrograph for ESPRESSO, and its Coude relay system.

  19. Security enhancement of a phase-truncation based image encryption algorithm.

    Science.gov (United States)

    Wang, Xiaogang; Zhao, Daomu

    2011-12-20

    The asymmetric cryptosystem, which is based on phase-truncated Fourier transforms (PTFTs), can break the linearity of conventional systems. However, it has been proven to be vulnerable to a specific attack based on iterative Fourier transforms when the two random phase masks are used as public keys to encrypt different plaintexts. An improvement from the asymmetric cryptosystem may be taken by relocating the amplitude values in the output plane. In this paper, two different methods are adopted to realize the amplitude modulation of the output image. The first one is to extend the PTFT-based asymmetrical cryptosystem into the anamorphic fractional Fourier transform domain directly, and the second is to add an amplitude mask in the Fourier plane of the encryption scheme. Some numerical simulations are presented to prove the good performance of the proposed cryptosystems. PMID:22193194

  20. Cordyceps fungi as natural killers, new hopes for medicine and biological control factors.

    Science.gov (United States)

    Dworecka-Kaszak, Bożena

    2014-01-01

    The Cordyceps genus includes many species of fungi, most of which are endoparasitoids on arthropods.The distribution of these fungi is cosmopolitan, but many occur in regions such as Asia with a hot, humid climate. These pathogens of insect pests are promising candidates for use as biological control factors. Entomopathogenic fungi including the famous Cordyceps sinensis produce bioactive compounds. Lately Cordyceps sinensis was renamed Ophiocordyceps sinensis. This fungus has a long history as a medicinal fungus. It germinates in a living host, kills and mummifies the larva, and then grows from the body of the host. Is known in Tibet as the “winter worm, summer grass”,or “Caterpillar fungus” (Yartsa gunbu). Collecting Ophiocordyceps has become an important source of money for local households in Nepal. Ophiocordyceps sinensis is cultivated as an anamorph for its medicinal and pharmaceutical properties in an artificial medium on an industrial scale. Ophiocordyceps compounds have immunostimulating properties and antitumor activity. PMID:25281812

  1. Distribution of Erysiphe platani (Erysiphales in Ukraine

    Directory of Open Access Journals (Sweden)

    Vasyl P. Heluta

    2013-12-01

    Full Text Available Information is provided on Erysiphe platani, a newly invasive fungus in Ukraine. The anamorph of this North American powdery mildew was first recorded in Ukraine in 1986 on Platanus orientalis in the Nikita Botanical Garden (Crimea. Later, it was found in other localities of the Crimean peninsula, and in Odessa and Odessa region on three species of plane, namely P. × hispanica, P. occidentalis and P. orientalis. Spread of the fungus was epiphytotic. This mildew significantly reduces the ornamental value of plane trees, which are often planted in public open spaces within urban areas of southern Ukraine. Recently, E. platani has formed the teleomorph in this region. Morphologically, the Ukrainian material is slightly different from the species description, viz. appendages are longer (up to 3 times the chasmothecial diam., often with less compact apices.

  2. Characteristics and diversity of Rhizoctonia spp. population in soil of selected forest bare-root nurseries in Poland

    Directory of Open Access Journals (Sweden)

    Marta Bełka

    2014-12-01

    Full Text Available Fourty three Rhizoctonia isolates obtained from four forest nurseries situated in the Wielkopolska region (central-western Poland has been proved as multinucleate (anamorph – R. solani. They represented four anastomosis groups (AG: AG1-IC, AG-5, AG4-HG2 and AG2-1. Three AGs were found in Jarocin nursery (AG-5, AG4-HG2 and AG2-1, two in Łopuchówko (AG-5 and AG4-HG2 and one in Konstantynowo (AG1-IC and Pniewy (AG-5. All isolates were highly pathogenic to Scots pine (Pinus sylvestris seedlings and pose a large damping-off threat to the seedlings in the nurseries with single AG and in those where more AGs exists.

  3. Species concepts and biodiversity in Trichoderma and Hypocrea: from aggregate species to species clusters?

    Institute of Scientific and Technical Information of China (English)

    DRUZHININA Irina; KUBICEK Christian P.

    2005-01-01

    Trichoderma/Hypocrea is a genus of soil-borne or wood-decaying fungi containing members important to mankind as producers of industrial enzymes and biocontrol agents against plant pathogens, but also as opportunistic pathogens of immunocompromised humans. Species identification, while essential in view of the controversial properties of taxa ofthis genus, has been problematic by traditional methods. Here we will present a critical survey of the various identification methods in use. In addition,we will present an update on the taxonomy and phylogeny of the 88 taxa (which occur as 14 holomorphs, 49 teleomorphs and 25 anamorphs in nature) of Trichoderma/Hypocrea that have been confirmed by a combination of morphological, physiological and genetic approaches.

  4. Nanolaminate Membranes as Cylindrical Telescope Reflectors

    Science.gov (United States)

    Dooley, Jennifer; Dragovan, Mark; Hickey, Gregory; Lih, Shyh-Shiu Lih

    2010-01-01

    A document discusses a proposal to use axially stretched metal nanolaminate membranes as lightweight parabolic cylindrical reflectors in the Dual Anamorphic Reflector Telescope (DART) - a planned spaceborne telescope in which the cylindrical reflectors would be arranged to obtain a point focus. The discussion brings together a combination of concepts reported separately in several prior NASA Tech Briefs articles, the most relevant being "Nanolaminate Mirrors With Integral Figure-Control Actuators" NPO -30221, Vol. 26, No. 5 (May 2002), page 90; and "Reflectors Made From Membranes Stretched Between Beams" NPO -30571, Vol. 33, No. 10 (October 2009), page 11a. The engineering issues receiving the greatest emphasis in the instant document are (1) the change in curvature associated with the Poisson contraction of a stretched nanolaminate reflector membrane and (2) the feasibility of using patches of poly(vinylidene fluoride) on the rear membrane surface as piezoelectric actuators to correct the surface figure for the effect of Poisson contraction and other shape errors.

  5. Expression and characterization of an endo-1,4-β-galactanase from Emericella nidulans in Pichia pastoris for enzymatic design of potentially prebiotic oligosaccharides from potato galactans

    DEFF Research Database (Denmark)

    Michalak, Malwina; Thomassen, Lise Vestergaard; Roytio, Henna;

    2012-01-01

    Potato pulp is a high-volume side-stream from industrial potato starch manufacturing. Enzymatically solubilized β-1,4-galactan-rich potato pulp polysaccharides of molecular weights >100kDa (SPPP) are highly bifidogenic in human fecal sample fermentations in vitro. The objective of the present study...... was to use potato β-1,4-galactan and the SPPP as substrates for enzymatic production of potentially prebiotic compounds of lower and narrower molecular weight. A novel endo-1,4-β-galactanase from Emericella nidulans (anamorph Aspergillus nidulans), GH family 53, was produced in a recombinant Pichia...... pastoris strain. The enzyme was purified by Cu2+ affinity chromatography and its optimal reaction conditions were determined to pH 5 and 49°C via a statistical experimental design. The specific activity of the E. nidulans enzyme expressed in P. pastoris was similar to that of an endo-1,4-β-galactanase from...

  6. Conflation: a new type of accelerated expansion

    Science.gov (United States)

    Fertig, Angelika; Lehners, Jean-Luc; Mallwitz, Enno

    2016-08-01

    In the framework of scalar-tensor theories of gravity, we construct a new kind of cosmological model that conflates inflation and ekpyrosis. During a phase of conflation, the universe undergoes accelerated expansion, but with crucial differences compared to ordinary inflation. In particular, the potential energy is negative, which is of interest for supergravity and string theory where both negative potentials and the required scalar-tensor couplings are rather natural. A distinguishing feature of the model is that, for a large parameter range, it does not significantly amplify adiabatic scalar and tensor fluctuations, and in particular does not lead to eternal inflation and the associated infinities. We also show how density fluctuations in accord with current observations may be generated by adding a second scalar field to the model. Conflation may be viewed as complementary to the recently proposed anamorphic universe of Ijjas and Steinhardt.

  7. BZcon1, a SANT/Myb-type gene involved in the conidiation of Cochliobolus carbonum.

    Science.gov (United States)

    Zhang, Jun-xiang; Wu, Yi-xin; Ho, Honhing; Zhang, Hao; He, Peng-fei; He, Yue-qiu

    2014-08-01

    The fungal pathogen Cochliobolus carbonum (anamorph, Bipolaris zeicola) causes Northern Leaf Spot, leading to a ubiquitous and devastating foliar disease of corn in Yunnan Province, China. Asexual spores (conidia) play a major role in both epidemics and pathogenesis of Northern Leaf Spot, but the molecular mechanism of conidiation in C. carbonum has remained elusive. Here, using a map-based cloning strategy, we cloned a single dominant gene, designated as BZcon1 (for Bipolaris zeicola conidiation), which encodes a predicted unknown protein containing 402 amino acids, with two common conserved SANT/Myb domains in N-terminal. The BZcon1 knockout mutant completely lost the capability to produce conidiophores and conidia but displayed no effect on hyphal growth and sexual reproduction. The introduced BZcon1 gene fully complemented the BZcon1 null mutation, restoring the capability for sporulation. These data suggested that the BZcon1 gene is essential for the conidiation of C. carbonum. PMID:24898708

  8. EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2011 update)

    DEFF Research Database (Denmark)

    Hald, Tine

    EFSA is requested to assess the safety of a broad range of biological agents (including microorganisms and viruses) in the context of notifications for market authorisation as sources of food and feed additives, enzymes and plant protection products. The qualified presumption of safety (QPS......) assessment was developed by EFSA for its own use to provide a generic risk assessment approach applicable across EFSA’s scientific Panels, for biological agents notified for intentional use in the whole food chain. The safety of unambiguously defined biological agents at the highest taxonomic unit that is...... recommendations. The anamorph yeast form Phaffia rhodozyma of Xanthophyllomyces dendrorhous was included on the QPS list and to the qualification for yeasts ‘absence of resistance to antimycotics used for medical treatment of yeast infections’, the sentence was added that ‘in the case of Saccharomyces cerevisiae...

  9. Microoptical telescope compound eye.

    Science.gov (United States)

    Duparré, Jacques; Schreiber, Peter; Matthes, André; Pshenay-Severin, Ekaterina; Bräuer, Andreas; Tünnermann, Andreas; Völkel, Reinhard; Eisner, Martin; Scharf, Toralf

    2005-02-01

    A new optical concept for compact digital image acquisition devices with large field of view is developed and proofed experimentally. Archetypes for the imaging system are compound eyes of small insects and the Gabor-Superlens. A paraxial 3x3 matrix formalism is used to describe the telescope arrangement of three microlens arrays with different pitch to find first order parameters of the imaging system. A 2mm thin imaging system with 21x3 channels, 70 masculinex10 masculine field of view and 4.5mm x 0.5mm image size is optimized and analyzed using sequential and non-sequential raytracing and fabricated by microoptics technology. Anamorphic lenses, where the parameters are a function of the considered optical channel, are used to achieve a homogeneous optical performance over the whole field of view. Captured images are presented and compared to simulation results. PMID:19494951

  10. Polarization/Spatial Combining of Laser-Diode Pump Beams

    Science.gov (United States)

    Gelsinger, Paul; Liu, Duncan

    2008-01-01

    A breadboard version of an optical beam combiner is depicted which make it possible to use the outputs of any or all of four multimode laser diodes to pump a non-planar ring oscillator (NPRO) laser. The output of each laser diode has a single-mode profile in the meridional plane containing an axis denoted the 'fast' axis and a narrower multimode profile in the orthogonal meridional plane, which contains an axis denoted the 'slow' axis and a narrower multimode profile in the orthogonal meridional plane, which contains an axis denoted the 'slow' axis. One of the purposes served by the beam-combining optics is to reduce the fast-axis numerical aperture (NA) of the laser-diode output to match the NA of the optical fiber. Along the slow axis, the unmodified laser-diode NA is already well matched to the fiber optic NA, so no further slow-axis beam shaping is needed. In this beam combiner, the laser-diode outputs are collimated by aspherical lenses, then half-wave plates and polarizing beam splitters are used to combine the four collimated beams into two beams. Spatial combination of the two beams and coupling into the optical fiber is effected by use of anamorphic prisms, mirrors, and a focusing lens. The anamorphic prisms are critical elements in the NA-matching scheme, in that they reduce the fast-axis beam width to 1/6 of its original values. Inasmuch as no slow-axis beam shaping is needed, the collimating and focusing lenses are matched for 1:1 iumaging. Because these lenses are well corrected for infinite conjugates the combiner offers diffraction-limited performance along both the fast and slow axes.

  11. Non-mycorrhizal fungal endophytes in two orchids of Kaiga forest (Western Ghats), India

    Institute of Scientific and Technical Information of China (English)

    Naga M. Sudheep; Kandikere R. Sridhar

    2012-01-01

    We used standard isolation protocols to explore the endophytic fungal communities in three tissue types of two dominant orchids (Bulbophyllum neilgherrense and Vanda testacea) of the Kaiga forest of the Western Ghats.We surface sterilized and assessed 90 segments of each orchid for the occurrence and diversity of endophytic fungal taxa.The 118 fungal isolates were obtained from root,bulb and leaves of B.neilgherrense,consisting of 17 anamorphic taxa (range,10-15 taxa) with 1.3 fungal taxa per segment (range,1.2-1.4 taxa).Four taxa (Aspergillus flavus,A.niger,Penicillium sp.and morpho sp.1 ) belonged to the core group (11.1%-32.2%).The relative abundance ofA.flavus and morpho sp.1 was more than 10%.A total of 130 fungal isolates from roots,stems and leaves of V.testacea yielded 20 anamorphic taxa (range,11-15 taxa)with 1.4 fungal taxa per segment (range,1.4-1.5 taxa).Aspergillusflavus,A.niger,A.ochraceus,Gliocladium viride,Penicillium sp.and morpho sp.1 belonged to the core group.Relative abundance exceeded 10% for A.flavus,A.niger,and morpho sp.1.The Simpson and Shannon diversity indices were higher in leaf than root or bulb/stem of both orchids.Jaccard's similarity coefficient was higher between root and leaf in both orchids (56.3%-60%) than between other pairs.Our study revealed that the endophytic fungal assemblage and diversity ofB.neilgherrense and V.testacea of Kaiga forest of the Western Ghats were relatively similar between orchids and their tissues.

  12. Dendryphion penicillatum and Pleospora papaveracea, Destructive Seedborne Pathogens and Potential Mycoherbicides for Papaver somniferum.

    Science.gov (United States)

    O'Neill, N R; Jennings, J C; Bailey, B A; Farr, D F

    2000-07-01

    ABSTRACT Dendryphion penicillatum and Pleospora papaveracea were isolated from blighted Papaver somniferum and Papaver bracteatum plants grown in growth chambers and the field in Beltsville, MD. The etiology of the diseases was determined, and the fungi are being investigated as potential mycoherbicides to control the narcotic opium poppy plant. P. papaveracea is known to be a highly destructive seedborne pathogen of Papaver somniferum, causing seedling blight, leaf blight, crown rot, and capsule rot. Single conidia and ascospores were isolated and cultures established from naturally infested seed and diseased foliage and pods of opium poppy from Iran, Colombia, Venezuela, Sweden, India, and the United States (Maryland and Washington). Mycelia and conidia of P. papaveracea and D. penicillatum produced on necrotic leaf tissues appear morphologically similar, and the fungi were previously considered to be anamorph and teleomorph. However, no anamorph/teleomorph connection could be established, and the fungi appear to be distinct taxa. P. papaveracea produced conidia, mature pseudothecia, and chlamydospores in vitro and on infected stems. D. penicillatum produced conidia, microsclerotia, and macronematous conidiophores. Although both fungi were pathogenic to three poppy cultivars, conidial inoculum from P. papaveracea cultures was more virulent than conidial inoculum from D. penicillatum. Eight-week-old plants became necrotic and died 8 days after inoculation with a conidial suspension of P. papaveracea at 2 x 10(5) spores per ml. Disease severity was significantly enhanced by inoculum formulations that contained corn oil, by higher conidial inoculum concentrations, and by increased wetness periods. Symptoms on plants inoculated with either pathogen included leaf and stem necrosis, stem girdling, stunting, necrotic leaf spots, and foliar and pod blight. Inoculated seedlings exhibited wire stem, damping-off, and root rot. Conidia, and less frequently pseudothecia, of P

  13. Analysis of the mating-type loci of co-occurring and phylogenetically related species of Ascochyta and Phoma.

    Science.gov (United States)

    Woudenberg, Joyce H C; De Gruyter, Johannes; Crous, Pedro W; Zwiers, Lute-Harm

    2012-05-01

    Ascochyta and Phoma are fungal genera containing several important plant pathogenic species. These genera are morphologically similar, and recent molecular studies performed to unravel their phylogeny have resulted in the establishment of several new genera within the newly erected Didymellaceae family. An analysis of the structure of fungal mating-type genes can contribute to a better understanding of the taxonomic relationships of these plant pathogens, and may shed some light on their evolution and on differences in sexual strategy and pathogenicity. We analysed the mating-type loci of phylogenetically closely related Ascochyta and Phoma species (Phoma clematidina, Didymella vitalbina, Didymella clematidis, Peyronellaea pinodes and Peyronellaea pinodella) that co-occur on the same hosts, either on Clematis or Pisum. The results confirm that the mating-type genes provide the information to distinguish between the homothallic Pey. pinodes (formerly Ascochyta pinodes) and the heterothallic Pey. pinodella (formerly Phoma pinodella), and indicate the close phylogenetic relationship between these two species that are part of the disease complex responsible for Ascochyta blight on pea. Furthermore, our analysis of the mating-type genes of the fungal species responsible for causing wilt of Clematis sp. revealed that the heterothallic D. vitalbina (Phoma anamorph) is more closely related to the homothallic D. clematidis (Ascochyta anamorph) than to the heterothallic P. clematidina. Finally, our results indicate that homothallism in D. clematidis resulted from a single crossover between MAT1-1 and MAT1-2 sequences of heterothallic ancestors, whereas a single crossover event followed by an inversion of a fused MAT1/2 locus resulted in homothallism in Pey. pinodes. PMID:22014305

  14. Hidden diversity behind the zombie-ant fungus Ophiocordyceps unilateralis: four new species described from carpenter ants in Minas Gerais, Brazil.

    Directory of Open Access Journals (Sweden)

    Harry C Evans

    Full Text Available BACKGROUND: Ophiocordyceps unilateralis (Clavicipitaceae: Hypocreales is a fungal pathogen specific to ants of the tribe Camponotini (Formicinae: Formicidae with a pantropical distribution. This so-called zombie or brain-manipulating fungus alters the behaviour of the ant host, causing it to die in an exposed position, typically clinging onto and biting into the adaxial surface of shrub leaves. We (HCE and DPH are currently undertaking a worldwide survey to assess the taxonomy and ecology of this highly variable species. METHODS: We formally describe and name four new species belonging to the O. unilateralis species complex collected from remnant Atlantic rainforest in the south-eastern region (Zona da Mata of the State of Minas Gerais, Brazil. Fully illustrated descriptions of both the asexual (anamorph and sexual (teleomorph stages are provided for each species. The new names are registered in Index Fungorum (registration.indexfungorum.org and have received IF numbers. This paper is also a test case for the electronic publication of new names in mycology. CONCLUSIONS: We are only just beginning to understand the taxonomy and ecology of the Ophiocordyceps unilateralis species complex associated with carpenter ants; macroscopically characterised by a single stalk arising from the dorsal neck region of the ant host on which the anamorph occupies the terminal region and the teleomorph occurs as lateral cushions or plates. Each of the four ant species collected--Camponotus rufipes, C. balzani, C. melanoticus and C. novogranadensis--is attacked by a distinct species of Ophiocordyceps readily separated using traditional micromorphology. The new taxa are named according to their ant host.

  15. DNA phylogeny, morphology and pathogenicity of Botryosphaeria species on grapevines.

    Science.gov (United States)

    van Niekerk, Jan M; Crous, Pedro W; Groenewald, J Z Ewald; Fourie, Paul H; Halleen, Francois

    2004-01-01

    Several species of Botr yosphaeria are known to occur on grapevines, causing a wide range of disorders including bud mortality, dieback, brown wood streaking and bunch rot. In this study the 11 Botryosphaeria spp. associated with grapevines growing in various parts of the world, but primarily in South Africa, are distinguished based on morphology, DNA sequences (ITS-1, 5.8S, ITS-2 and EF1-α) and pathological data. Botryosphaeria australis, B. lutea, B. obtusa, B. parva, B. rhodina and a Diplodia sp. are confirmed from grapevines in South Africa, while Diplodia porosum, Fusicoccum viticlavatum and F. vitifusiforme are described as new. Although isolates of B. dothidea and B. stevensii are confirmed from grapevines in Portugal, neither of these species occurred in South Africa, nor were any isolates of B. ribis confirmed from grapevines. All grapevine isolates from Portugal, formerly presumed to be B. ribis, are identified as B. parva based on their EF1-α equence data. From artificial inoculations on grapevine shoots, we conclude that B. australis, B. parva, B. ribis and B. stevensii are more virulent than the other species studied. The Diplodia sp. collected from grapevine canes is morphologically similar but phylogenetically distinct from D. sarmentorum. Diplodia sarmentorum is confirmed as anamorph of Otthia spiraeae, the type species of the genus Otthia (Botryosphaeriaceae). A culture identified as O. spiraeae clustered within Botryosphaeria and thus is regarded as probable synonym. These findings confirm earlier suggestions that the generic concept of Botryosphaeria should be expanded to include genera with septate ascospores and Diplodia anamorphs. PMID:21148899

  16. Regional survey and identification of Bipolaris spp. associated with rice seeds in Rio Grande do Sul State, Brazil Levantamento regional e identificação de Bipolaris spp. associadas às sementes de arroz no Estado do Rio Grande do Sul, Brasil

    Directory of Open Access Journals (Sweden)

    Cândida Renata Jacobsen de Farias

    2011-03-01

    Full Text Available In the harvest year of 2004, a random sample of seed lots (n=165 from six rice-growing regions of Rio Grande do Sul (RS State, Brazil, were examined under seed health blotter test. Fungi growth resembling Bipolaris or Drechslera spp. was isolated and identified at the species level. Observations on the anamorphic structures (conidiophores and conidia allowed separation of isolates into three groups. Pseudothecia, asci and ascospores from sexual crosses between isolates from a same anamorphic group but originated from different regions showed the typical characteristics of three recognized species (anamorph/teleomorph: Bipolaris cynodontis (Cochliobolus cynodontis; B. curvispora (C. melinidis and B. oryzae (C. miyabeanus. All species were widely distributed across the rice-growing regions. Overall, the most prevalent species were B. oryzae (44.6% and B. curvispora (42,9% followed by B. cynodontis (24,1%. This is the first report of B. cynodontis associated with rice seeds in Brazil and the preliminary identification of B. curvispora in rice by the observation of the teleomorph phase was confirmed. The regional occurrence of a complex of pathogenic Bipolaris species related to brown spot epidemics in other countries, may have epidemiological consequences in the region which deserve further investigation.Uma amostra aleatória (n=165 de lotes de sementes de seis regiões produtoras de arroz no Estado do Rio Grande do Sul (RS, Brasil, ano de colheita 2004, foi examinada em teste blotter de sanidade de sementes. Fungos semelhantes a espécies de Bipolaris e Drechslera foram isolados para identificação das espécies. A observação de estruturas da fase anamórfica (conidióforos e conídios permitiu separar os isolados em três grupos. Cruzamentos sexuais induzidos em isolados do mesmo grupo, mas originados de diferentes regiões, resultaram em pseudotécio, ascos e ascósporos, permitindo a identificação de três espécies (anamorfo

  17. Epidemic and research advance of Citrus Black Spot%柑橘黑斑病(Citrus Black Spot)发生危害现状和研究进展

    Institute of Scientific and Technical Information of China (English)

    王兴红; 陈国庆; 王卫芳; 李红叶

    2011-01-01

    柑橘黑斑病(Citrus Black Spot,CBS)主要危害果实,在果皮上形成各种病斑而影响果实的外观品质和销售价格,严重时可造成田间落果和贮藏期果实腐烂。同时,黑斑病被欧盟列为A1类外来有害生物,美国对此也有严格的限制。因此,该病害影响柑橘鲜果的国际贸易。黑斑病的病原属球座菌(Guignardia),其无性态为叶点霉菌(Phyl-losticta)。宽皮柑橘(Citrus reticulata)、橙类(C.sinensis)和柠檬(C.limon)上为柑橘球座菌(G.citricarpa),无性态为%Citrus Black Spot(CBS) attacks citrus fruits,produces various spots on citrus rind,gives rise to the decrease in external quality and commercial value.It causes immature fruit-dropping in fields or postharvest decaying in storage houses when disease occurs severely.Meanwhile,CBS is regulated as an A1 quarantine pest by several countries of European Union,as well as USA,so international trade of fresh citrus is restricted by this disease.The causal agents of CBS belong to genus Guignardia(anamorph Phyllosticta).G.citricarpa(anamorph P.citricarpa) is responsible to the CBS of mandarins(C.reticulata),oranges(C.sinensis) and lemon(C.limon),whereas P.citriasiana(teleomorph unknown) is responsible to tan spot of pomeloes(C.grandis).In addition,an endophyte,P.capitalensis is commonly present on citrus,which often interferes the detection of CBS.CBS is a common disease in China,significant losses often be leaded to some susceptible varieties.However,the knowledge of CBS is handful in China.To satisfy the requirement of broad readers to full scenario of CBS,in current paper,we integrate the published information of inter-and intra-nation regarding CBS,and give a detail introduction on the aspects of disease history,distribution,significance,symptom,etiology,prevalence,detection control,etc.

  18. Development of microsatellite markers for the genetic analysis of Magnaporthe grisea

    Directory of Open Access Journals (Sweden)

    Brondani Claudio

    2000-01-01

    Full Text Available An AG microsatellite-enriched genomic DNA library was constructed for Magnaporthe grisea (anamorph Pyricularia grisea, the causal agent of rice blast. Seventy-two DNA clones containing microsatellite repeats were isolated and sequenced in order to develop a series of new PCR-based molecular markers to be used in genetic studies of the fungus. Twenty-four of these clones were selected to design primer pairs for the PCR amplification of microsatellite alleles. Single spore cultures of M. grisea isolated from rice and wheat in Brazil, Colombia and China were genotyped at three microsatellite loci. Isolates from southern Brazil were predominantly monomorphic at the tested SSR loci, indicating a low level of genetic variability in these samples. However, seven alleles were observed at the MGM-1 locus in isolates from Central Brazil and at least nine alleles were detected at the same locus in a sample of Colombian isolates. Polymorphism analysis at SSR loci is a simple and direct approach for estimating the genetic diversity of M. grisea isolates and a powerful tool for studying M. grisea genetics.

  19. Graphical user interfaces for teaching and design of GRIN lenses in optical interconnections

    International Nuclear Information System (INIS)

    The use of graphical user interfaces (GUIs) enables the implementation of practical teaching methodologies to make the comprehension of a given subject easier. GUIs have become common tools in science and engineering education, where very often, the practical implementation of experiences in a laboratory involves much equipment and many people; they are an efficient and inexpensive solution to the lack of resources. The aim of this work is to provide primarily physics and engineering students with a series of GUIs to teach some configurations in optical communications using gradient-index (GRIN) lenses. The reported GUIs are intended to perform a complementary role in education as part of a ‘virtual lab’ to supplement theoretical and practical sessions and to reinforce the knowledge acquired by the students. In this regard, a series of GUIs to teach and research the implementation of GRIN lenses in optical communications applications (including a GRIN light deflector and a beam-size controller, a GRIN fibre lens for fibre-coupling purposes, planar interconnectors, and an anamorphic self-focusing lens to correct astigmatism in laser diodes) was designed using the environment GUIDE developed by MATLAB. Numerical examples using available commercial GRIN lens parameter values are presented. (paper)

  20. Description of Diutina gen. nov., Diutina siamensis, f.a. sp. nov., and reassignment of Candida catenulata, Candida mesorugosa, Candida neorugosa, Candida pseudorugosa, Candida ranongensis, Candida rugosa and Candida scorzettiae to the genus Diutina.

    Science.gov (United States)

    Khunnamwong, Pannida; Lertwattanasakul, Noppon; Jindamorakot, Sasitorn; Limtong, Savitree; Lachance, Marc-André

    2015-12-01

    Three strains (DMKU-RE28, DMKU-RE43T and DMKU-RE123) of a novel anamorphic yeast species were isolated from rice leaf tissue collected in Thailand. DNA sequence analysis demonstrated that the species forms a sister pair with Candida ranongensis CBS 10861T but differs by 24-30 substitutions in the LSU rRNA gene D1/D2 domains and 30-35 substitutions in the ITS region. A phylogenetic analysis based on both the small and the large rRNA gene subunits confirmed this connection and demonstrated the presence of a clade that also includes Candida catenulata, Candida mesorugosa, Candida neorugosa, Candida pseudorugosa, Candida rugosa and Candida scorzettiae. The clade is not closely affiliated to any known teleomorphic genus, and forms a well-separated lineage from currently recognized genera of the Saccharomycetales. Hence, the genus Diutina gen. nov. is proposed to accommodate members of the clade, including Diutina siamensis f.a. sp. nov. and the preceding seven Candida species. The type strain is DMKU-RE43T ( = CBS 13388T = BCC 61183T = NBRC 109695T). PMID:26410375

  1. Virulence and genetic diversity among isolates of Mycosphaerella fijiensis in two regions of Brazil.

    Science.gov (United States)

    Silva, G F; Santos, V S; Sousa, N R; Hanada, R E; Gasparotto, L

    2016-01-01

    Black sigatoka, caused by the fungus Mycosphaerella fijiensis (anamorphic stage: Paracercospora fijiensis), was first detected in Brazil in early 1998 in the Benjamin Constant and Tabatinga municipalities in the State of Amazonas, near to where the borders of Brazil, Colombia, and Peru converge. Understanding how cultivars react to the pathogen, and characterizing the genetic variability of isolates from two distant and distinct banana-producing regions, are important for determining the virulence of M. fijiensis. In the present study, the genetic diversity of 22 M. fijiensis isolates was assessed using simple sequence repeats (SSR) markers, and their virulence was determined following inoculation on three different banana tree cultivars. All 22 isolates caused symptoms of the disease in the Maçã and Prata Comum cultivars 45 days after inoculation, and at least two virulence groups were identified for the Maçã and Prata Comum cultivars. For the D'Angola cultivars, two virulence groups were observed only after 60 days post-inoculation, and three of the isolates were not virulent. Using SSR markers, the isolates from two different regions of Brazil were placed into two genetic groups, both genetically distant from the Mf 138 isolate collected in Leticia, Colombia. There was no evidence of correlation between the virulence groups and the genetic diversity groups. These results demonstrate variability in virulence between isolates as measured by the severity of black sigatoka in the analyzed cultivars. PMID:27173264

  2. Profile analysis of ventricle specimen based on a new phase measuring method

    Science.gov (United States)

    Cao, Yiping; Su, Xianyu; Chen, Wenjing; Xiang, Liqun; Zhang, Qichan; Liu, Yuankun

    2009-08-01

    The size and shape of ventricle are very important to analyze and diagnose pathology of human heart. So it is very necessary to measure the profile of ventricle. It is very difficult to measure the ventricle by vivisectional method for its unique function of heart, so the ventricle specimen is adopted to be measured. Three-dimensional (3D) automatic measurement methods are widely used in many fields. In Biology and Medicine society, it can be applicable for surgery, orthopedics, viscera disease analysis and diagnosis etc. Here a new method to measure the 3D surface of ventricle specimen is proposed. Although the traditional 3D measuing method with equal or stated phase-shifting step length possess excellent accuracy, they are much dependent on the consistency of these phase-shifting step lengths. In fact, this condition is very difficult to guarantee. which may lead to the incorrect wrapped phase and incorrect phase unwrapping in some regions, even the reconstructed object may be misshapen or anamorphic. In the proposed method, a novel improved three undecided step lengths phase-shifting algorithm with three unequal phase-shifting steps has been presented detailed and is applied to measure the profile of ventricle sucssesfully. Experiments show that the improved algorithm can not only effectively improve the measuring accuracy, but also branch out its application.

  3. Palaeoanellus dimorphus gen. et sp. nov. (Deuteromycotina): a Cretaceous predatory fungus.

    Science.gov (United States)

    Schmidt, Alexander R; Dörfelt, Heinrich; Perrichot, Vincent

    2008-10-01

    In habitats where nitrogen is the limiting factor, carnivorous fungi gain an advantage by preying on nematodes and other microorganisms. These fungi are abundant in modern terrestrial ecosystems, but they are not predestined for preservation as fossils. Conclusions on their evolutionary history are therefore mainly based on molecular studies that are generally limited to those taxa that have survived until today. Here we present a fossil dimorphic fungus that was found in Late Albian amber from southwestern France. This fungus possessed unicellular hyphal rings as trapping devices and formed blastospores from which a yeast stage developed. The fossil probably represents an anamorph of an ascomycete and is described as Palaeoanellus dimorphus gen. et sp. nov. Because predatory fungi with regular yeast stages are not known from modern ecosystems, the fungus is assumed to not be related to any Recent carnivorous fungus and to belong to an extinct lineage of carnivorous fungi. The inclusions represent the only record of fossil fungi that developed trapping devices, so far. The fungus lived c. 100 million years ago in a limnetic-terrestrial microhabitat, and it was a part of a highly diverse biocenosis at the forest floor of a Cretaceous coastal amber forest. PMID:21632336

  4. Genetic variation among pathogens causing "Helminthosporium" diseases of rice, maize and wheat

    Directory of Open Access Journals (Sweden)

    WEIKERT-OLIVEIRA RITA C. B.

    2002-01-01

    Full Text Available Twenty isolates of four fungal species, agents of "Helminthosporium" diseases in cereals, were collected from different regions: nine Bipolarisoryzae isolated from rice (Oryza sativa, seven B.sorokiniana from wheat (Triticum aestivum, two B. maydis, and two Exserohilumturcicum from maize (Zea mays. The strains were compared by PCR-RFLP and RAPD analysis. Size polymorphism among the isolates in the ITS region comprising the 5.8 S rDNA indicated genetic differences among the isolates, while a UPGMA phenogram constructed after the digestion of this region with restriction enzymes showed inter- and intra-specific polymorphism. The RAPD profiles indicated an expressive level of polymorphism among different species, compared with a low level of polymorphism among isolates of the same species. A UPGMA phenogram grouped the isolates according to the species and their host plant. RAPD profiles did not reveal polymorphism that directly correlated climatic factors with geographic source of the isolates of B. sorokiniana, and B. oryzae. Teleomorphic species revealed high similarity with their correspondent anamorphs.

  5. Breakthrough Scedosporium apiospermum (Pseudallescheria boydii) brain abscess during therapy for invasive pulmonary aspergillosis following high-risk allogeneic hematopoietic stem cell transplantation. Scedosporiasis and recent advances in antifungal therapy.

    Science.gov (United States)

    Safdar, A; Papadopoulos, E B; Young, J W

    2002-12-01

    Systemic scedosporiasis due to the anamorph or asexual form Scedosporium apiospermum (Pseudallescheria boydii) has become an important cause of opportunistic mycosis, especially in patients undergoing high-risk hematopoietic stem cell transplantation. We report a case of rapidly progressive cerebellar hyalohyphomycosis due to Scedosporium apiospermum in an allogeneic marrow graft recipient receiving treatment for severe graft-versus-host disease. This fatal breakthrough intracranial abscess, due to amphotericin B-resistant (minimum inhibitory concentration > 16 micro g/ml) mold, developed during the course of systemic antifungal therapy given for multicentric pulmonary aspergillosis. Despite treatment with high-dose Abelcet (10 mg/kg daily), free amphotericin B was not detected in postmortem cerebellar tissue. A broad-spectrum triazole-based agent (voriconazole/UK-109, 496--Vfend), and a novel fungal cell wall inhibitor, an echinocandin/pneumocandin analog (caspofungin/MK-0991--Cancidas), which exhibit excellent in vitro activity against most clinical Pseudallescheria boydii-Scedosporium apiospermum isolates, have recently become available in the United States and may provide much needed treatment options for patients at risk. PMID:12535265

  6. Comparative transcriptome analysis of fruiting body and sporulating mycelia of Villosiclava virens reveals genes with putative functions in sexual reproduction.

    Science.gov (United States)

    Yu, Jun-Jie; Yu, Mi-Na; Nie, Ya-Feng; Sun, Wen-Xian; Yin, Xiao-Le; Zhao, Jie; Wang, Ya-Hui; Ding, Hui; Qi, Zhong-Qiang; Du, Yan; Huang, Li; Liu, Yong-Feng

    2016-08-01

    Sexual reproduction of heterothallic clavicipitaceous fungus Villosiclava virens (anamorph: Ustilaginoidea virens) generates ascospores, which is considered as primary infection source of rice false smut disease. However, little is known about the molecular underpinnings of sexual reproduction in V. virens. In this study, transcriptomes of V. virens in fruiting body (FB) and sporulating mycelia (SM) were compared using Illumina paired-end sequencing technology. A total of 33,384,588 and 23,765,275 clean reads of FB and SM transcriptome profiles could be used to map cDNA of V. virens, respectively. We evaluated the gene expression variations between FB and SM, a total of 488 genes therein were significantly higher expressed in FB than SM, and 342 genes were significantly higher expressed genes in SM than FB. These differentially expressed genes were annotated using Kyoto Encyclopedia of Genes and Genomes and Gene Ontology databases. Several genes were found to specifically function in sexual reproduction, involving in mating type, pheromone synthesis, signaling transduction, transcription factors, and meiosis; additionally, a few of genes were presumed to function in conidia sporulation and infection. Comparative transcriptome analysis of V. virens during FB and SM provided an overview of gene expression profiles at the transcriptional level and provided hints to better understand the molecular mechanisms of sexual development. Additionally, the data presented here also proved benefit for mining of essential genes contributing to sexual conidiation and infection. PMID:26905382

  7. Reclassification of the butternut canker fungus, Sirococcus clavigignenti-juglandacearum, into the genus Ophiognomonia.

    Science.gov (United States)

    Broders, K D; Boland, G J

    2011-01-01

    Sirococcus clavigignenti-juglandacearum (Sc-j), which causes a canker disease on butternut, is largely responsible for the decline of this tree in the United States and Canada. The original description of the species was based on anamorphic characters because the teleomorph is unknown. Recent phylogenetic investigations have found that Sc-j is not a member of the genus Sirococcus, and accurate taxonomic classification is required. The objective of this study is to use sequence data to determine the phylogenetic placement of Sc-j within the Gnomoniaceae, Diaporthales. Isolates were recovered from infected Juglans ailantifolia var. cordiformis (heartnut), Juglans cinerea (butternut), and Juglans nigra (black walnut) in Ontario and the eastern United States. The genes coding for β-tubulin, actin, calmodulin, internal transcribed spacers 1 and 2, and the translation elongation factor 1-alpha from 28 isolates of Sc-j and representatives of the major lineages within the Gnomoniaceae were evaluated. There was no difference in the sequences of the five genes among the isolates of Sc-j studied, indicating a recent introduction followed by asexual reproduction and spread via conidia. The phylogenetic analyses demonstrate this fungus does not belong to the genus Sirococcus, and provides strong support (99% MP and 100% NJ bootstrap values, and 100% Bayesian posterior probabilities) for its inclusion in the genus Ophiognomonia, thereby supporting a reclassification of the butternut canker fungus to Ophiognomonia clavigignenti-juglandacearum. PMID:21215957

  8. The complete mitochondrial genome of Paecilomyces hepiali (Ascomycota, Eurotiomycetes).

    Science.gov (United States)

    Wang, Linping; Xu, Jiayue; Li, Huchen; Song, Lipu; Yu, Yi; Zhang, Wensheng; Liu, Guiming; Feng, Chengqiang

    2016-01-01

    Paecilomyces hepiali, belonging to the Eurotiales order Ascomycota, is an endoparasitic fungus that commonly exists in the natural Cordyceps sinensis anamorph stage. Here, we report the complete mitochondrial DNA sequences of P. hepiali for the first time. The genome is 24,245 bp in length, encoding 15 protein-coding genes (PCGs), 2 rRNA genes, 25 tRNA genes and 3 homing endonucleases. The overall AT composition is 73.37% and the average AT content of PCG, rRNA, tRNA and non-coding region are 74.21%, 66.07%, 62.83% and 75.96%, respectively. Phylogenetic analysis with eight Ascomycota species and thirteen Basidiomycota species revealed that P. hepiali is was more closely related to Cordyceps bassiana, Cordycep smilitaris and Cordyceps brongniartii. It is confirmed that P. hepiali is a derivative of Cordyceps sinensis. This study provided valuable information on the gene contents of the mitochondrial genome and would facilitate the study of function and evolution of P. hepiali. PMID:24963769

  9. Chemical characterization of bioactive compounds from the endophytic fungus Diaporthe helianthi isolated from Luehea divaricata

    Science.gov (United States)

    Specian, Vânia; Sarragiotto, Maria Helena; Pamphile, João Alencar; Clemente, Edmar

    2012-01-01

    Endophytic microorganisms, defined as fungi or bacteria that colonize the interior of plants without causing any immediate negative effects or damages, have reciprocal relationships with host plants. In some cases their presence is beneficial to the host due to the synthesis of bioactive compounds, among which several alcohols, esters, ketones and others that may react with other compounds and may be lethal to pathogenic microorganisms. Diaporthe helianthi (Phomopsis helianthi in its anamorphic phase) is available worldwide, especially in Europe, Asia and America. Isolated in Europe as an agent of the sunflower stem cancer, it has also been endophytically isolated from tropical and temperate plants. A D. helianthi strain isolated from Luehea divaricata has been employed in current research. An investigation of the secondary metabolite from D. helianthi by CC and NMR of 1H and 13C yielded the separation of 10 fractions and the identification of the phenolic compound 2(-4 hydroxyphenyl)-ethanol (Tyrosol). Its antimicrobial reaction was tested and the ensuing antagonistic effects on the human pathogenic bacteria Enterococcus hirae, Escherichia coli, Micrococcus luteus, Salmonella typhi, Staphylococcus aureus, phytopathogenic Xanthomonas asc. phaseoli and phytopathogenic fungi were demonstrated. Results show that bioactive compounds and Tyrosol produced by D. helianthi have a biotechnological potential. PMID:24031942

  10. Clonal species Trichoderma parareesei sp. nov. likely resembles the ancestor of the cellulase producer Hypocrea jecorina/T. reesei.

    Science.gov (United States)

    Atanasova, Lea; Jaklitsch, Walter M; Komoń-Zelazowska, Monika; Kubicek, Christian P; Druzhinina, Irina S

    2010-11-01

    We have previously reported that the prominent industrial enzyme producer Trichoderma reesei (teleomorph Hypocrea jecorina; Hypocreales, Ascomycota, Dikarya) has a genetically isolated, sympatric sister species devoid of sexual reproduction and which is constituted by the majority of anamorphic strains previously attributed to H. jecorina/T. reesei. In this paper we present the formal taxonomic description of this new species, T. parareesei, complemented by multivariate phenotype profiling and molecular evolutionary examination. A phylogenetic analysis of relatively conserved loci, such as coding fragments of the RNA polymerase B subunit II (rpb2) and GH18 chitinase (chi18-5), showed that T. parareesei is genetically invariable and likely resembles the ancestor which gave raise to H. jecorina. This and the fact that at least one mating type gene of T. parareesei has previously been found to be essentially altered compared to the sequence of H. jecorina/T. reesei indicate that divergence probably occurred due to the impaired functionality of the mating system in the hypothetical ancestor of both species. In contrast, we show that the sexually reproducing and correspondingly more polymorphic H. jecorina/T. reesei is essentially evolutionarily derived. Phenotype microarray analyses performed at seven temperature regimens support our previous speculations that T. parareesei possesses a relatively high opportunistic potential, which probably ensured the survival of this species in ancient and sustainable environment such as tropical forests. PMID:20817800

  11. Which Fungus Originally was Trichophyton mentagrophytes? Historical Review and Illustration by a Clinical Case.

    Science.gov (United States)

    Chollet, Annemay; Cattin, Vincent; Fratti, Marina; Mignon, Bernard; Monod, Michel

    2015-08-01

    Several dermatophytes producing numerous pyriform or round microconidia were called Trichophyton mentagrophytes. Among these dermatophytes are the teleomorph species Arthroderma benhamiae, Arthroderma vanbreuseghemii and Arthroderma simii, and other species such as Trichophyton interdigitale, Trichophyton erinacei and Trichophyton quinckeanum for which only the anamorph is known. Confusion exists about which fungus should be really called T. mentagrophytes and about the rational use of this name in practice. We report a case of beard ringworm (tinea barbae) with A. vanbreuseghemii. According to both clinical signs and the type of hair parasitism, this case was exactly compatible to the first description of a non-favic dermatophytosis by Gruby under the name of "mentagrophyte" from which was derived the dermatophyte epithet mentagrophytes. In addition, the phenotypic characters of the isolated fungus in cultures perfectly matched with those of the first description of a dermatophyte under T. mentagrophytes by Blanchard (Parasites animaux et parasites végétaux à l'exclusion des Bactéries, Masson, Paris, 1896). In conclusion, T. mentagrophytes corresponds to the fungus later named A. vanbreuseghemii. However, because the neotype of T. mentagrophytes was not adequately designated in regard to the ancient literature, we would privilege the use of A. vanbreuseghemii and abandon the name of T. mentagrophytes. PMID:25912796

  12. Genetic and Phenotypic analyses of Calcineurin A subunit in Arthroderma vanbreuseghemii.

    Science.gov (United States)

    Alshahni, Mohamed Mahdi; Shimizu, Kiminori; Yoshimoto, Maki; Yamada, Tsuyoshi; Nishiyama, Yayoi; Arai, Toshiro; Makimura, Koichi

    2016-02-01

    Calcineurin is a serine/threonine protein phosphatase that consists of catalytic (calcineurin A) and regulatory (calcineurin B) subunits. The conserved protein plays important roles in various biological processes. Drug combination of fluconazole and the calcineurin inhibitor (FK506) showed synergistic effects against dermatophytes. In the current study, we identified the calcineurin A homologous gene (TmcanA) in the dermatophyte Arthroderma vanbreuseghemii (anamorph: Trichophyton mentagrophytes). Knockdown mutants were produced from A. vanbreuseghemii, resulting in a defection in growth properties in accordance with dose of the suppressing reagent. The TmcanA gene restored the ability of calcineurin A-deficient Cryptococcus neoformans strain to grow at elevated temperatures. Repression of TmcanA at 37°C resulted in severely stunted growth, suggesting that this protein plays a role in tolerance to elevated temperatures. In addition, TMCANA showed an interaction with high osmolarity glycerol (HOG) signalling pathway by governing the secretion of a secondary metabolite. Moreover, expression of the hydrophobin A gene (TmHF) decreased significantly under the TmcanA-repressive condition, suggesting that TMCANA is involved in its regulation. In conclusion, calcineurin A is a multifunctional gene that is involved in the regulation of several biological processes and therefore is worth being considered as a drug target for treatment of dermatophytoses. PMID:26483437

  13. Cutaneous Phaeohyphomycosis Caused by Exophiala attenuata in a Domestic Cat.

    Science.gov (United States)

    Overy, David P; Martin, Chelsea; Muckle, Anne; Lund, Lorraine; Wood, Jill; Hanna, Paul

    2015-10-01

    A 7-year-old female-spayed, domestic short-haired cat was presented to her veterinarian with a mass on the hind paw. Histopathologic examination of a tissue biopsy revealed nodular pyogranulomatous panniculitis with intralesional pigmented fungal hyphae. A dematiaceous fungal isolate was isolated with a micromorphological phenotype consistent with the anamorphic genus Exophiala: budding cells, torulose mycelium and annellidic conidiogenesis from simple conidiophores consisting of terminal and lateral cells that tapered to a short beak at the apex. Sequence homology of the internal transcribed spacer region of the rDNA gene confirmed the identification of the isolate as Exophiala attenuata. Reported here is the first confirmed case of feline phaeohyphomycosis caused by E. attenuata in North America. Similar to historical cases of feline phaeohyphomycosis caused by Exophiala spp., there was no history or postmortem evidence to suggest the patient was in an immunocompromised state (e.g., suffering from FeLV or FIV). Although aggressive surgical excision of local lesions is recommended prior to drug treatment when dealing with subcutaneous phaeohyphomycosis, surgery followed by itraconazole treatment did not resolve the E. attenuata infection in this cat. PMID:26088340

  14. Fruiting Body Production of the Medicinal Chinese Caterpillar Mushroom, Ophiocordyceps sinensis (Ascomycetes), in Artificial Medium.

    Science.gov (United States)

    Cao, Li; Ye, Yunshou; Han, Richou

    2015-01-01

    Ophiocordyceps sinensis (syn. Cordyceps sinensis), regarded as the "Himalayan Viagra", is widely used for medicinal treatment and health foods. The price of O. sinensis has continued to increase over the past few years because of the growing worldwide demand and resource limitations. Artificial cultivation of the fruiting bodies to substitute natural O. sinensis is urgently needed for the effective protection of a valuable bioresource and environment in the Tibetan plateau, and for commercial trade. In this study, the anamorph of 3 isolates was separated from natural O. sinensis and identified by molecular markers as Hirsutella sinensis. These fungal isolates were cultured in a rice-based medium at 9-13 °C for 50 days for mycelial growth, at 4 °C for 100 days for stromatal induction, and at 13 °C for 40 days for fruiting body formation. The mature fruiting bodies with mature perithecium were harvested in about 140 days. This is, to our knowledge, the first report of stable fruiting body production of O. sinensis by artificial media in the low-altitude area outside the Tibetan plateau. PMID:26853966

  15. Hirsutella sinensis mycelium attenuates bleomycin-induced pulmonary inflammation and fibrosis in vivo.

    Science.gov (United States)

    Huang, Tsung-Teng; Lai, Hsin-Chih; Ko, Yun-Fei; Ojcius, David M; Lan, Ying-Wei; Martel, Jan; Young, John D; Chong, Kowit-Yu

    2015-01-01

    Hirsutella sinensis mycelium (HSM), the anamorph of Cordyceps sinensis, is a traditional Chinese medicine that has been shown to possess various pharmacological properties. We previously reported that this fungus suppresses interleukin-1β and IL-18 secretion by inhibiting both canonical and non-canonical inflammasomes in human macrophages. However, whether HSM may be used to prevent lung fibrosis and the mechanism underlying this activity remain unclear. Our results show that pretreatment with HSM inhibits TGF-β1-induced expression of fibronectin and α-SMA in lung fibroblasts. HSM also restores superoxide dismutase expression in TGF-β1-treated lung fibroblasts and inhibits reactive oxygen species production in lung epithelial cells. Furthermore, HSM pretreatment markedly reduces bleomycin-induced lung injury and fibrosis in mice. Accordingly, HSM reduces inflammatory cell accumulation in bronchoalveolar lavage fluid and proinflammatory cytokines levels in lung tissues. The HSM extract also significantly reduces TGF-β1 in lung tissues, and this effect is accompanied by decreased collagen 3α1 and α-SMA levels. Moreover, HSM reduces expression of the NLRP3 inflammasome and P2X7R in lung tissues, whereas it enhances expression of superoxide dismutase. These findings suggest that HSM may be used for the treatment of pulmonary inflammation and fibrosis. PMID:26497260

  16. Naturally-Occurring Entomopathogenic Fungi on Three Bark Beetle Species (Coleoptera: Curculionidae in Bulgaria

    Directory of Open Access Journals (Sweden)

    Slavimira A. Draganova

    2010-01-01

    Full Text Available Bark beetles (Coleoptera: Curculionidae: Scolytinae belong to one of the most damaging groups of forest insects and the activity of their natural enemies –pathogens, parasitoids,parasites or predators suppressing their population density,is of great importance. Biodiversity of entomopathogenic fungi on bark beetles in Bulgaria has been investigated sporadically. The aim of this preliminary study was to find, identify and study morphological characteristics of fungal entomopathogens naturally-occurring in populations of three curculionid species – Ips sexdentatus Boern, Ips typographus (L. and Dryocoetes autographus (Ratz.. Dead pest adults were found under the bark of Pinus sylvestris and Picea abies trees collectedfrom forests in the Maleshevska and Vitosha Mountains. Fungal pathogens were isolated into pure cultures on SDAY (Sabouraud dextrose agar with yeast extract and were identified based on morphological characteristics both on the host and in a culture.Morphological characteristics of the isolates were studied by phenotypic methods. The fungal isolates obtained from dead adults of Ips sexdentatus, Ips typographus and D. autographus were found to belong to the species Beauveria bassiana (Bals. – Criv. Vuillemin,Beauveria brongniartii (Saccardo Petch and Isaria farinosa (Holmsk. Fries (anamorph Ascomycota, Sordariomycetes: Hypocreales, Cordycipitaceae. Morphological traits of the isolates are described.

  17. Extension of the broadband single-mode integrated optical waveguide technique to the ultraviolet spectral region and its applications.

    Science.gov (United States)

    Wiederkehr, Rodrigo S; Mendes, Sergio B

    2014-03-21

    We report here the fabrication, characterization, and application of a single-mode integrated optical waveguide (IOW) spectrometer capable of acquiring optical absorbance spectra of surface-immobilized molecules in the visible and ultraviolet spectral region down to 315 nm. The UV-extension of the single-mode IOW technique to shorter wavelengths was made possible by our development of a low-loss single-mode dielectric waveguide in the UV region based on an alumina film grown by atomic layer deposition (ALD) over a high quality fused silica substrate, and by our design/fabrication of a broadband waveguide coupler formed by an integrated diffraction grating combined with a highly anamorphic optical beam of large numerical aperture. As an application of the developed technology, we report here the surface adsorption process of bacteriochlorophyll a on different interfaces using its Soret absorption band centred at 370 nm. The effects of different chemical compositions at the solid-liquid interface on the adsorption and spectral properties of bacteriochlorophyll a were determined from the polarized UV-Vis IOW spectra acquired with the developed instrumentation. The spectral extension of the single-mode IOW technique into the ultraviolet region is an important advance as it enables extremely sensitive studies in key characteristics of surface molecular processes (e.g., protein unfolding and solvation of aromatic amino-acid groups under surface binding) whose spectral features are mainly located at wavelengths below the visible spectrum. PMID:24466569

  18. Common, unsightly and until now undescribed: Fumiglobus pieridicola sp. nov., a sooty mold infesting Pieris japonica from western North America.

    Science.gov (United States)

    Bose, Tanay; Reynolds, Don R; Berbee, Mary L

    2014-01-01

    Sooty molds (Capnodiaceae) are saprotrophs on the surfaces of leaves, and they take their nutrients from honeydew exuded by sap-sucking insects. We describe and illustrate the sooty mold Fumiglobus pieridicola sp. nov., which, to the dismay of gardeners, forms a thick black mycelial coating on the leaves and twigs of ornamental Japanese andromeda (Pieris japonica) in western North America. As a mitosporic species with a pycnidium that lacks an elongated neck and has at most a rudimentary stalk, the species belongs in the genus Fumiglobus. Although locally common, we found no specimens identified under Fumiglobus or its synonyms in regional herbaria and no record of any similar fungus in host indices. Our species differs from others in Fumiglobus in having smaller pycnidia and conidia and in having intercalary as well as apical pycnidia. We determined partial 18S and 28S ribosomal gene sequences for F. pieridicola, the first for any Fumiglobus species. Sequence analysis provides strong bootstrap support for including Fumiglobus within Capnodiaceae. We also determined 18S and 28S sequences for the type species of the mitosporic genus Conidiocarpus, also in Capnodiaceae. We confirm that Conidiocarpus is the anamorph of Phragmocapnias. Following the rules of nomenclatural priority, we propose the new combinations Conidiocarpus asiaticus, Conidiocarpus betle, Conidiocarpus callitris, Conidiocarpus fuliginodes, Conidiocarpus heliconiae, Conidiocarpus imperspicuus and Conidiocarpus siamensis. We hope that describing the mystery fungus from our region and providing sequences for its molecular identification will lead to new studies on its biology and distribution. PMID:24891416

  19. Characterization of a non-pigment producing Monascus purpureus mutant strain.

    Science.gov (United States)

    Rasheva, Tanya V; Nedeva, Trayana S; Hallet, Jean-Noel; Kujumdzieva, Anna V

    2003-01-01

    A characterization of a non-pigment producing mutant Monascus purpureus M12 compared with its parental strain Monascus purpureus Went CBS 109.07 has been performed aiming to investigate the relation between pigment biosynthesis and other characteristics of these fungi. A comparison has been made of morphological features, some physiological properties and biochemical activities of both strains. The albino mutant exhibits an anamorph life cycle, high conidia forming capability, slower radial growth rate and temperature sensitivity. The assimilation capacity of both strains for mono-, disaccharides and some alcohols is in the same range (Yx/c 0.2 - 0.35), while the red strain has a higher fermentation capacity. In a selected albino mutant, the growth rate, metabolic activity and capacity for production of typical for Monascus fungi secondary metabolites were reduced considerably. Hydrolytic activity towards natural substrates expressed through glucoamylase and protease was approximately 10 fold lower in the non pigment producing strain (0.05 - 0.08 U/mg protein and 0.01 - 0.07 U/mg protein respectively) compared with the red one. Important qualitative differences between both strains was found in fatty acid composition and in the production of citrinin and monacolin. The mutant strain possessed C17, C20 and C22 fatty acids and did not produce citrinin. PMID:12777069

  20. Diffraction analysis of beams for barcode scanning

    Science.gov (United States)

    Eastman, Jay M.; Quinn, Anna M.

    1991-02-01

    Laser based bar code scanners utilize large f/# beams to attain a large depth of focus. The intensity cross-section of the laser beam is generally not uniform but is frequently approximated by a Gaussian intensity profile. In the case of laser diodes the beam cross-section is a two dimensional distribution. It is well known that the focusing properties of large f/# Gaussian beams differ from the predictions of ray tracing techniques. Consequently analytic modeling of laser based bar code scanning systems requires techniques based on diffraction rather than on ray tracing in order to obtain agreement between theory and practice. The line spread function of the focused laser beam is generally the parameter of interest due to the one-dimensional nature of the bar code symbol. Some bar code scanners utilize an anamorphic optical system to produce a beam that that maintains an elliptical cross-section over an extended depth of focus. This elliptical beam shape is used to average over voids and other printing defects that occur in real world symbols. Since the scanner must operate over the maximum possible depth of field the beam emergent from the scanner must be analyzed in both its near field and far field regions in order to properly model the performance of the scanner.

  1. Ergot species of the Claviceps purpurea group from South Africa.

    Science.gov (United States)

    van der Linde, Elna J; Pešicová, Kamila; Pažoutová, Sylvie; Stodůlková, Eva; Flieger, Miroslav; Kolařík, Miroslav

    2016-08-01

    Results of a survey and study of the Claviceps purpurea group of species in South Africa are being presented and five new species are described. Morphological descriptions are based on the anamorphs and four nuclear genetic loci. Claviceps fimbristylidis sp. nov. on Fimbristylis complanata was discovered wide-spread across five provinces of the country associated with water and represents the fourth Claviceps species recorded from the Cyperaceae. Claviceps monticola sp. nov. is described from Brachypodium flexum growing in mountain forests in Mpumalanga Province, as well as the northern Drakensberg southwards into the Eastern Cape Province. Claviceps pazoutovae sp. nov. is recorded from Stipa dregeana var. dregeana and Ehrharta erecta var. erecta, also associated with these mountain ranges. Claviceps macroura sp. nov. is recorded from Cenchrus macrourus from the Eastern Cape and Claviceps capensis sp. nov. from Ehrharta villosa var. villosa is recorded from the Western Cape Province. Claviceps cyperi, only recorded from South Africa is included in the study. Ergot alkaloid profiles of all species are provided and showed similarity to C. purpurea. Only C. cyperi and in lesser degree C. capensis, C. macroura, and C. pazoutovae produced ergot alkaloids in clinically significant amounts. Several reported species infect invasive grass species, native to South Africa, and thus represent potentially invasive species. PMID:27521625

  2. Disseminated histoplasmosis in two juvenile raccoons (Procyon lotor) from a nonendemic region of the United States.

    Science.gov (United States)

    Clothier, Kristin A; Villanueva, Michelle; Torain, Andrea; Reinl, Steve; Barr, Bradd

    2014-03-01

    Two 6-month-old raccoon kits, which had been rescued and fostered in preparation for return to the wild, became acutely ill and died 3 weeks before scheduled release. At necropsy, the kits had grossly enlarged livers and spleens, diffusely consolidated lungs, and generalized lymphadenopathy. Histologically, extensive infiltrates of macrophages containing yeast organisms were identified in lung, liver, kidney, spleen, lymph nodes, intestinal tissues, brain, adrenal gland, bone marrow, and thymus of both animals. Histiocytic inflammation with accompanying fibrosis was widespread, with necrotic foci evident in lungs, spleen, and intestinal sections. Fungal organisms were observed on sheep blood agar plates; however, repeated subcultures to fungal media designed to induce conidial structures for fungal identification were unsuccessful. Partial DNA sequencing of the 28S ribosomal RNA gene of the blood agar isolate identified 100% homology with Ajellomyces capsulatus (anamorphic name Histoplasma capsulatum). The kits were rescued and fostered in the San Francisco Bay area and it is likely that the exposure to H. capsulatum occurred in this area. Histoplasma sp. infection in wild mammal species is often used as an indication of spore contamination of a geographic region. Northern California is not known to be an endemic region for H. capsulatum, which is not a reportable disease in this state. The presence of severe, disseminated disease and the need for molecular identification associated with the isolate from a nonendemic region identified in the present report may indicate genetic adaptation and altered characteristics of this agent and may warrant further investigation. PMID:24557751

  3. Fungi vectored by the bark beetle Ips typographus following hibernation under the bark of standing trees and in the forest litter.

    Science.gov (United States)

    Persson, Ylva; Vasaitis, Rimvydas; Långström, Bo; Ohrn, Petter; Ihrmark, Katarina; Stenlid, Jan

    2009-10-01

    The bark beetle Ips typographus has different hibernation environments, under the bark of standing trees or in the forest litter, which is likely to affect the beetle-associated fungal flora. We isolated fungi from beetles, standing I. typographus-attacked trees, and forest litter below the attacked trees. Fungal identification was done using cultural and molecular methods. The results of the two methods in detecting fungal species were compared. Fungal communities associated with I. typographus differed considerably depending on the hibernation environment. In addition to seven taxa of known ophiostomoid I. typographus-associated fungi, we detected 18 ascomycetes and anamorphic fungi, five wood-decaying basidomycetes, 11 yeasts, and four zygomycetes. Of those, 14 fungal taxa were detected exclusively from beetles that hibernated under bark, and six taxa were detected exclusively from beetles hibernating in forest litter. The spruce pathogen, Ceratocystis polonica, was detected occasionally in bark, while another spruce pathogen, Grosmannia europhioides, was detected more often from beetles hibernating under the bark as compared to litter. The identification method had a significant impact on which taxa were detected. Rapidly growing fungal taxa, e.g. Penicillium, Trichoderma, and Ophiostoma, dominated pure culture isolations; while yeasts dominated the communities detected using molecular methods. The study also demonstrated low frequencies of tree pathogenic fungi carried by I. typographus during its outbreaks and that the beetle does not require them to successfully attack and kill trees. PMID:19444498

  4. Fabrication of metal mirror modules for snap-together VIS telescopes

    Science.gov (United States)

    Beier, Matthias; Hartung, Johannes; Kinast, Jan; Gebhardt, Andreas; Burmeister, Frank; Zeitner, Uwe D.; Risse, Stefan; Eberhardt, Ramona; Tünnermann, Andreas

    2015-10-01

    The assembly effort of an optical system naturally relies on the degrees of freedom and the maximum allowable tolerances each optical surface introduces into the overall budget. Snap-together approaches traditionally can be regarded as attractive solutions for IR systems having moderate tolerances, where the required precision is achieved by simultaneously machining optical surfaces and mounting interfaces in a single machine setup. Recent improvements in manufacturing and metrology enable a transfer of the assembly approach to shorter wavelength applications, where sub-aperture figuring techniques are used in combination with suitable amorphous polishing layers to achieve the increased requirements on figure and finish. A further decrease of the assembly effort is gained by machining several optical surfaces on common mechanical substrates and fixing the relative position with uncertainties as low as the machine precision. The article presents the fabrication of large electroless nickel coated aluminum mirror modules having two functional freeform surfaces and references for metrology and system integration. The modules are part of an all metal anamorphic imaging telescope operating in the visual spectral range. Presented methods open up a rapid and reliable assembly of metal mirror based VIS telescopes to be used in ground and space based astronomy or remote sensing applications.

  5. Chemical characterization of bioactive compounds from the endophytic fungus Diaporthe helianthi isolated from Luehea divaricata.

    Science.gov (United States)

    Specian, Vânia; Sarragiotto, Maria Helena; Pamphile, João Alencar; Clemente, Edmar

    2012-07-01

    Endophytic microorganisms, defined as fungi or bacteria that colonize the interior of plants without causing any immediate negative effects or damages, have reciprocal relationships with host plants. In some cases their presence is beneficial to the host due to the synthesis of bioactive compounds, among which several alcohols, esters, ketones and others that may react with other compounds and may be lethal to pathogenic microorganisms. Diaporthe helianthi (Phomopsis helianthi in its anamorphic phase) is available worldwide, especially in Europe, Asia and America. Isolated in Europe as an agent of the sunflower stem cancer, it has also been endophytically isolated from tropical and temperate plants. A D. helianthi strain isolated from Luehea divaricata has been employed in current research. An investigation of the secondary metabolite from D. helianthi by CC and NMR of (1)H and (13)C yielded the separation of 10 fractions and the identification of the phenolic compound 2(-4 hydroxyphenyl)-ethanol (Tyrosol). Its antimicrobial reaction was tested and the ensuing antagonistic effects on the human pathogenic bacteria Enterococcus hirae, Escherichia coli, Micrococcus luteus, Salmonella typhi, Staphylococcus aureus, phytopathogenic Xanthomonas asc. phaseoli and phytopathogenic fungi were demonstrated. Results show that bioactive compounds and Tyrosol produced by D. helianthi have a biotechnological potential. PMID:24031942

  6. Chemical characterization of bioactive compounds from the endophytic fungus Diaporthe helianthi isolated from Luehea divaricata

    Directory of Open Access Journals (Sweden)

    Vânia Specian

    2012-09-01

    Full Text Available Endophytic microorganisms, defined as fungi or bacteria that colonize the interior of plants without causing any immediate negative effects or damages, have reciprocal relationships with host plants. In some cases their presence is beneficial to the host due to the synthesis of bioactive compounds, among which several alcohols, esters, ketones and others that may react with other compounds and may be lethal to pathogenic microorganisms. Diaporthe helianthi (Phomopsis helianthi in its anamorphic phase is available worldwide, especially in Europe, Asia and America. Isolated in Europe as an agent of the sunflower stem cancer, it has also been endophytically isolated from tropical and temperate plants. A D. helianthi strain isolated from Luehea divaricata has been employed in current research. An investigation of the secondary metabolite from D. helianthi by CC and NMR of ¹H and 13C yielded the separation of 10 fractions and the identification of the phenolic compound 2(-4 hydroxyphenyl-ethanol (Tyrosol. Its antimicrobial reaction was tested and the ensuing antagonistic effects on the human pathogenic bacteria Enterococcus hirae, Escherichia coli, Micrococcus luteus, Salmonella typhi, Staphylococcus aureus, phytopathogenic Xanthomonas asc. phaseoli and phytopathogenic fungi were demonstrated. Results show that bioactive compounds and Tyrosol produced by D. helianthi have a biotechnological potential.

  7. Freeform grinding and polishing with PROSurf

    Science.gov (United States)

    Wolfs, Franciscus; Fess, Edward; DeFisher, Scott; Torres, Josh; Ross, James

    2015-10-01

    Recently, the desire to use freeform optics has been increasing, including shapes such as torics and anamorphic aspheres. Freeform optics can be used to expand capabilities of optical systems. They can compensate for limitations in rotationally symmetric optics. These same traits that give freeform optics the ability to improve optical systems also makes them more challenging to manufacture. This holds true for grinding, polishing, and metrology. As freeform optics become more prevalent in the industry, tolerances will become more stringent, requiring deterministic manufacturing processes. To generate freeforms, it is crucial to have control over all aspects of the process. Controlling the surface definition is important for achieving a better surface finish during processing. Metrology will be required to adjust tool paths at various stages in manufacturing. During grinding, metrology will be used to adjust tool positions relative to the nominal tool path to compensate for repeatable machine and tooling error. For polishing, metrology will be used to deterministically adjust dwell relative to the amount of the error in different surface locations, allowing for convergence towards the desired surface at a uniform rate. OptiPro has developed PROSurf, a CAM software package for creating freeform tool paths and applying metrology-based corrections. The software can be used for both grinding and polishing freeform optics. The software has flexibility to allow for different methods of modelling the surface: mathematical equations, solid models, and point clouds. The software is designed to make it easier to manufacture and polish complex freeform optics.

  8. Novel compact panomorph lens based vision system for monitoring around a vehicle

    Science.gov (United States)

    Thibault, Simon

    2008-04-01

    Automotive applications are one of the largest vision-sensor market segments and one of the fastest growing ones. The trend to use increasingly more sensors in cars is driven both by legislation and consumer demands for higher safety and better driving experiences. Awareness of what directly surrounds a vehicle affects safe driving and manoeuvring of a vehicle. Consequently, panoramic 360° Field of View imaging can contributes most to the perception of the world around the driver than any other sensors. However, to obtain a complete vision around the car, several sensor systems are necessary. To solve this issue, a customized imaging system based on a panomorph lens will provide the maximum information for the drivers with a reduced number of sensors. A panomorph lens is a hemispheric wide angle anamorphic lens with enhanced resolution in predefined zone of interest. Because panomorph lenses are optimized to a custom angle-to-pixel relationship, vision systems provide ideal image coverage that reduces and optimizes the processing. We present various scenarios which may benefit from the use of a custom panoramic sensor. We also discuss the technical requirements of such vision system. Finally we demonstrate how the panomorph based visual sensor is probably one of the most promising ways to fuse many sensors in one. For example, a single panoramic sensor on the front of a vehicle could provide all necessary information for assistance in crash avoidance, lane tracking, early warning, park aids, road sign detection, and various video monitoring views.

  9. Mycopopulations of alfalfa silage with particular review on toxigenic Fusarium spp.

    Directory of Open Access Journals (Sweden)

    Bočarov-Stančić Aleksandra S.

    2005-01-01

    Full Text Available Mycological and mycotoxicological investigations of alfalfa samples (initial not fermented plant material, as well as silage obtained from unfaded and faded state of the same were performed during the year 2003. Total of 14 fungal species, included in 11 genera, were identified during the present study. The most frequent moulds were Chaetomium piluliferum and their anamorph Botryotrichum piluliferum (83.3% and 66.7% respectively. Potentially toxigenic Fusarium spp. (F. culmorum, F. semitectum and F. sporotrichioides were observed less frequently (from 16.7% to 33.0% and only on initial not fermented alfalfa. From the sample of alfalfa faded state contaminated with 0.25 mg/kg of diacetoxyscirpenol (DAS and 1.28 mg/kg of zearalenone (ZEA F. semitectum SL-B was isolated. The production of fusariotoxins by this strain was later on tested in vitro conditions. Different aeration treatments in semisynthetic medium with glucose (GPK or sucrose (SPK, as well as cultivation on sterilized corn kernels (moisture content 47% were used. The highest yield of DAS (64.0 mg/l was obtained during submerged cultivation of F. semitectum SL-B in GPK (210 rpms, 3 days room temperature. Production of T-2 toxin, but rather poor (0.08 mg/1, was detected only in SPK (150 rpms, 3 days, room temperature. ZEA was found exclusively after 25 days of cultivation on corn kernels at room temperature (21-25°C.

  10. Genetic diversity in potato field populations of Thanatephorus cucumeris AG-3, revealed by ITS polymorphism and RAPD markers.

    Science.gov (United States)

    Justesen, Annemarie Fejer; Yohalem, David; Bay, Anne; Nicolaisen, Mogens

    2003-11-01

    DNA sequence analysis of the internal transcribed spacer region 1 (ITS1) and random amplified polymorphic DNA (RAPD) markers were used to survey genetic variability in relation to agronomic and regional factors among 60 isolates of Thanatephorus cucumeris (anamorph Rhizoctonia solani) collected from lesions on potato stems or sclerotia of potato tubers. Based on comparative sequence analysis it was shown that all isolates belonged to anastomosis group 3 subgroup Potato Type (AG-3 PT). ITS1 sequence polymorphisms were found within 45 of the 60 isolates showing that different types of the ITS-region are present in individual isolates. Cloning and sequence analysis of the ITS1 region from three selected isolates with sequence polymorphism showed that two different ITS1-types were present in each isolate. RAPD analysis identified 51 RAPD-phenotypes among the 60 investigated isolates indicating a high level of diversity within the subgroup AG-3 PT. Putative clonal isolates with identical RAPD- and ITS1-types were identified within fields, and in one case the same phenotype was found in two different fields separated by several hundred kilometers. Population subdivision analysis based on phenotypic as well as genotypic diversities showed differentiation among populations from different fields when isolates were sampled from tubers, indicating restricted gene flow among soil populations. Low differentiation was seen among field populations sampled from stems, indicating that gene flow is taking place. The population structure was not influenced by the previous crop in the rotation nor by the two cultivars 'Sava' and 'Bintje'. PMID:15000234

  11. Novel Endophytic Trichoderma spp. Isolated from Healthy Coffea arabica Roots are Capable of Controlling Coffee Tracheomycosis

    Directory of Open Access Journals (Sweden)

    Temesgen Belayneh Mulaw

    2013-10-01

    Full Text Available One of the biggest threats to coffee growers in East Africa are emerging vascular wilt diseases (tracheomycosis caused by Fusarium spp. Many Trichoderma species are known to be natural antagonists of these pathogens and are widely used in biological control of fungal plant diseases. More recently, several Trichoderma spp., which exhibited high antifungal activity have been isolated as endophytes. Consequently, we have investigated the presence and the antagonistic activity of endophytic Trichoderma isolated from roots of healthy coffee plants (Coffea arabica from the major coffee growing regions of Ethiopia. Our results showed that community of Trichoderma spp. in roots of C. arabica contains fungi from coffee rhizosphere, as well as putatively obligate endophytic fungi. The putatively “true” endophytic species, until now, isolated only from coffee plant ecosystems in Ethiopia and recently described as T. flagellatum and novel T. sp. C.P.K. 1812 were able to antagonize Fusarium spp., which cause coffee tracheomycosis. Moreover, we found that strains of these species are also highly antagonistic against other phytopathogenic fungi, such as Alternaria alternata, Botryotinia fuckeliana (anamorph: Botrytis cinerea, and Sclerotinia sclerotiorum.

  12. Screening of thermotolerant and thermophilic fungi aiming β-xylosidase and arabinanase production

    Directory of Open Access Journals (Sweden)

    Vivian Machado Benassi

    2014-12-01

    Full Text Available Plant cell wall is mainly composed by cellulose, hemicellulose and lignin. The heterogeneous structure and composition of the hemicellulose are key impediments to its depolymerization and subsequent use in fermentation processes. Thus, this study aimed to perform a screening of thermophilic and thermotolerant filamentous fungi collected from different regions of the São Paulo state, and analyze the production of β-xylosidase and arabinanase at different temperatures. These enzymes are important to cell wall degradation and synthesis of end products as xylose and arabinose, respectively, which are significant sugars to fermentation and ethanol production. A total of 12 fungal species were analyzed and 9 of them grew at 45 ºC, suggesting a thermophilic or thermotolerant character. Additionally Aspergillus thermomutatus anamorph of Neosartorya and A. parasiticus grew at 50 ºC. Aspergillus niger and Aspergillus thermomutatus were the filamentous fungi with the most expressive production of β-xylosidase and arabinanase, respectively. In general for most of the tested microorganisms, β-xylosidase and arabinanase activities from mycelial extract (intracellular form were higher in cultures grown at high temperatures (35-40 ºC, while the correspondent extracellular activities were favorably secreted from cultures at 30 ºC. This study contributes to catalogue isolated fungi of the state of São Paulo, and these findings could be promising sources for thermophilic and thermotolerant microorganisms, which are industrially important due to their enzymes.

  13. Discussion on Transformable Near Space Airship Technology%临近空间变体飞艇技术研究

    Institute of Scientific and Technical Information of China (English)

    肖益军

    2013-01-01

    介绍临近空间飞艇国外发展现状,分析变体飞艇系统重量轻、飞行升限高、环境适应性和持续驻空能力强的独特优势,论述临近空间飞艇的高效变体模式,阐述临近空间变体飞艇的关键技术,如飞艇变体控制技术、飞艇飞行控制技术,为临近空间飞艇后续研究提供参考。%This paper introduces the state of the development of near-space airship ,analyzes the advantages of anamorphic airship ,such as light weight ,high ceiling ,atmospheric feasibility and long endurance ,dem-onstrates the high-efficiency transformation mode for near-space airship ,and expounds the key techniques in detail ,such as transformation control technique and airship flight control technique so as to offer refer-ences for the follow-up study of transformable near space airship .

  14. Candida famata (Debaryomyces hansenii) DNA sequences containing genes involved in riboflavin synthesis.

    Science.gov (United States)

    Voronovsky, Andriy Y; Abbas, Charles A; Dmytruk, Kostyantyn V; Ishchuk, Olena P; Kshanovska, Barbara V; Sybirna, Kateryna A; Gaillardin, Claude; Sibirny, Andriy A

    2004-11-01

    Previously cloned Candida famata (Debaryomyces hansenii) strain VKM Y-9 genomic DNA fragments containing genes RIB1 (codes for GTP cyclohydrolase II), RIB2 (encodes specific reductase), RIB5 (codes for dimethylribityllumazine synthase), RIB6 (encodes dihydroxybutanone phosphate synthase) and RIB7 (codes for riboflavin synthase) were sequenced. The derived amino acid sequences of C. famata RIB genes showed extensive homology to the corresponding sequences of riboflavin synthesis enzymes of other yeast species. The highest identity was observed to homologues of D. hansenii CBS767, as C. famata is the anamorph of this hemiascomycetous yeast. The D. hansenii CBS767 RIB3 gene encoding specific deaminase was cloned. This gene successfully complemented riboflavin auxotrophy of the rib3 mutant of flavinogenic yeast, Pichia guilliermondii. Putative iron-responsive elements (potential sites for binding of the transcription factors Fep1p or Aft1p and Aft2p) were found in the upstream regions of some C. famata and D. hansenii RIB genes. The sequences of C. famata RIB genes have been submitted to the EMBL data library under Accession Nos AJ810169-AJ810173. PMID:15543522

  15. IDIOSYNCRASY OF LOCAL FUNGAL ISOLATE HYPOCREA RUFA STRAIN P2: PLANT GROWTH PROMOTION AND MYCOPARASITISM

    Directory of Open Access Journals (Sweden)

    Parth Thakor

    2016-06-01

    Full Text Available Trichoderma viride an anamorph of Hypocrea rufa, is a known bio-control agent against various fungal phytopathogens. In the present study, H. rufa strain P2 was tested for plant growth promoting (PGP traits and antifungal activity against Fusarium oxysporum, Alternaria alternata, Aspergillus niger, Sclerotium rolfsii. In-vitro assessment of H. rufa strain P2 showed maximum IAA production of 68 µg ml-1, solubilised tri-calcium phosphate up to 72 µg ml-1 and showed production of chitinase enzyme 120 U ml-1. In order to determine in-vivo plant growth promotion, talc based formulation of H. rufa strain P2 was prepared and tested on Arachis hypogaea L. using seed and soil application. After 15 days, treated plants showed six-fold increases in the fresh and dry root mass whereas, fresh and dry shoot mass was increased up to two folds. The result indicates the local isolate H. rufa strain P2 can be categorized as phyto-friendly fungi which can be used as both, bio-control agent as well as phyto-augmenting bio-fertilizer.

  16. Edge effect on the decomposition process of leaf litter in cloud forest

    International Nuclear Information System (INIS)

    Forest fragments are physically delimited by edges and encircled by a surrounding matrix. The interaction between these communities dissimilar in structure and composition is defined as the edge effect. This occurrence generates local abiotic and biotic changes altering soil ecosystem processes. To determine the existence of the effect on leaf litter decomposition and its control factors, two fragments of cloud forest in the southwest region of the Bogota savannah were selected. within each, two 64 m long transects were laid out bearing east and west from edge to center respectively, a leaf litter decomposition experiment of a 90 to 180 day duration was set up at seven distances measured from the starting point of each transect. The percentage of leaf litter moisture and decomposition, vegetation density, anamorphic fungi density and carbon: Nitrogen ratios were estimated at each point. The maximum distance of the edge effect on the decomposition was determined, and the interaction between orientation, distance and the regulating factors of the decomposition process were ascertained. The results established an effect of the cardinal orientation of the edge on the decomposition and its regulating factors. Marked edge effects on leaf litter moisture extending up to 7 m and up to 30 m on vegetation density were displayed in eastern border areas. In forest areas, decomposition was regulated by leaf litter moisture and its c:n ratio. The limited penetration of edge effect suggests minor effects regarding nutrient cycles and provides justification and additional value to the use of small fragments.

  17. Categorial compositionality III: F-(co)algebras and the systematicity of recursive capacities in human cognition.

    Science.gov (United States)

    Phillips, Steven; Wilson, William H

    2012-01-01

    Human cognitive capacity includes recursively definable concepts, which are prevalent in domains involving lists, numbers, and languages. Cognitive science currently lacks a satisfactory explanation for the systematic nature of such capacities (i.e., why the capacity for some recursive cognitive abilities-e.g., finding the smallest number in a list-implies the capacity for certain others-finding the largest number, given knowledge of number order). The category-theoretic constructs of initial F-algebra, catamorphism, and their duals, final coalgebra and anamorphism provide a formal, systematic treatment of recursion in computer science. Here, we use this formalism to explain the systematicity of recursive cognitive capacities without ad hoc assumptions (i.e., to the same explanatory standard used in our account of systematicity for non-recursive capacities). The presence of an initial algebra/final coalgebra explains systematicity because all recursive cognitive capacities, in the domain of interest, factor through (are composed of) the same component process. Moreover, this factorization is unique, hence no further (ad hoc) assumptions are required to establish the intrinsic connection between members of a group of systematically-related capacities. This formulation also provides a new perspective on the relationship between recursive cognitive capacities. In particular, the link between number and language does not depend on recursion, as such, but on the underlying functor on which the group of recursive capacities is based. Thus, many species (and infants) can employ recursive processes without having a full-blown capacity for number and language. PMID:22514704

  18. Site index for teak in Colombia

    Institute of Scientific and Technical Information of China (English)

    Danny A. Torres; Jorge I. del Valle; Guillermo Restrepo

    2012-01-01

    Determination of site quality is a basic tool for proper selection of locations and species,in management of forest plantations.Throughout the Caribbean studies of site quality are few and are hampered by statistical limitations,inappropriate growth models,and limited data.We fitted growth curves for dominant height to evaluate and classify site quality ofteak (Tectona grandis) plantations by using data from 44 permanent sample plots established since 1990 in 3-22 years old teak plantations in the Colombian Caribbean region.We used Korf's and von Bertalanffy's models to fit curves as non-linear effects models.Both models,with a single random parameter,were considered as adequate for dominant height growth modelling,but Korf's model was superior.The resulting curves were anamorphic and closely reflected high variability in site quality.Five site classes were clarified:at a base age of 12 years old,teak reached a mean dominant height of 24.8 m on the best sites,9.8 m in the worst sites,and in the averages sites,15.8-18.8 m.Using this model,we identified the best and the worst sites for teak plantations in the Caribbean region.This model proved a useful tool,not only for site quality evaluation,but also for improved teak plantation planning and management.

  19. Neoerysiphe kerribeeensis sp. nov. (Ascomycota: Erysiphales), a new species of Neoerysiphe on native and introduced species of Senecio (Asteraceae) in Australia.

    Science.gov (United States)

    Beilharz, Vyrna; Cunnington, James H; Pascoe, Ian G

    2010-04-01

    Anamorphic powdery mildew fungi on introduced taxa of Senecio and Pericallis × hybrida in Australia have previously been identified as Neoerysiphe cumminsiana on the basis of a combination of Euoidium-type conidiophores and lobed mycelial and germ tube appressoria. But, two specimens with chasmothecia on the indigenous Senecio glossanthus did not agree with published descriptions of N. cumminsiana. The teleomorph of the S. glossanthus mildew differed from that of N. cumminsiana in the morphology of its peridial cells, the pigmentation of its appendages, and the morphology and pigmentation of some secondary hyphae. Ribosomal DNA ITS sequences from the two S. glossanthus mildew specimens and five other specimens of Senecio mildews from south-eastern Australia demonstrated that all Australian Senecio mildews are conspecific and distinct from the northern hemisphere Senecio mildew (N. cumminsiana) and from other Neoerysiphe taxa. Based on morphological characters and rDNA sequence data, the Australian Senecio mildew is described as a new species, Neoerysiphe kerribeeensis. This is the first native teleomorphic powdery mildew described from Australia. PMID:20943143

  20. Colony-PCR Is a Rapid Method for DNA Amplification of Hyphomycetes

    Directory of Open Access Journals (Sweden)

    Georg Walch

    2016-04-01

    Full Text Available Fungal pure cultures identified with both classical morphological methods and through barcoding sequences are a basic requirement for reliable reference sequences in public databases. Improved techniques for an accelerated DNA barcode reference library construction will result in considerably improved sequence databases covering a wider taxonomic range. Fast, cheap, and reliable methods for obtaining DNA sequences from fungal isolates are, therefore, a valuable tool for the scientific community. Direct colony PCR was already successfully established for yeasts, but has not been evaluated for a wide range of anamorphic soil fungi up to now, and a direct amplification protocol for hyphomycetes without tissue pre-treatment has not been published so far. Here, we present a colony PCR technique directly from fungal hyphae without previous DNA extraction or other prior manipulation. Seven hundred eighty-eight fungal strains from 48 genera were tested with a success rate of 86%. PCR success varied considerably: DNA of fungi belonging to the genera Cladosporium, Geomyces, Fusarium, and Mortierella could be amplified with high success. DNA of soil-borne yeasts was always successfully amplified. Absidia, Mucor, Trichoderma, and Penicillium isolates had noticeably lower PCR success.

  1. Phylogenomic and functional domain analysis of polyketide synthases in Fusarium

    Energy Technology Data Exchange (ETDEWEB)

    Brown, Daren W.; Butchko, Robert A.; Baker, Scott E.; Proctor, Robert H.

    2012-02-01

    Fusarium species are ubiquitous in nature, cause a range of plant diseases, and produce a variety of chemicals often referred to as secondary metabolites. Although some fungal secondary metabolites affect plant growth or protect plants from other fungi and bacteria, their presence in grain based food and feed is more often associated with a variety of diseases in plants and in animals. Many of these structurally diverse metabolites are derived from a family of related enzymes called polyketide synthases (PKSs). A search of genomic sequence of Fusarium verticillioides, F. graminearum, F. oxysporum and Nectria haematococca (anamorph F. solani) identified a total of 58 PKS genes. To gain insight into how this gene family evolved and to guide future studies, we conducted a phylogenomic and functional domain analysis. The resulting genealogy suggested that Fusarium PKSs represent 34 different groups responsible for synthesis of different core metabolites. The analyses indicate that variation in the Fusarium PKS gene family is due to gene duplication and loss events as well as enzyme gain-of-function due to the acquisition of new domains or of loss-of-function due to nucleotide mutations. Transcriptional analysis indicate that the 16 F. verticillioides PKS genes are expressed under a range of conditions, further evidence that they are functional genes that confer the ability to produce secondary metabolites.

  2. Isolation of Pseudozyma churashimaensis sp. nov., a novel ustilaginomycetous yeast species as a producer of glycolipid biosurfactants, mannosylerythritol lipids.

    Science.gov (United States)

    Morita, Tomotake; Ogura, Yuki; Takashima, Masako; Hirose, Naoto; Fukuoka, Tokuma; Imura, Tomohiro; Kondo, Yukishige; Kitamoto, Dai

    2011-08-01

    An ustilaginomycetous anamorphic yeast species isolated from the leaves of Saccharum officinarum (sugarcane) in Okinawa, Japan, was identified as a novel Pseudozyma species based on morphological and physiological aspects and molecular taxonomic analysis using the D1/D2 domains of the large subunit (26S) rRNA gene and the internal transcribed spacer 1 (ITS1)-5.8S-ITS2 regions. The name Pseudozyma churashimaensis sp. nov. was proposed for the novel species, with JCM 16988(T) as the type strain. Interestingly, P. churashimaensis was found to produce glycolipid biosurfactants, a mixture of mannosylerythritol lipids (MELs), including a novel tri-acetylated derivative (MEL-A2), from glucose. The observed critical micelle concentration (CMC) and the surface tension at CMC of MEL-A2 were 1.7 × 10⁻⁶ M and 29.2 mN/m, respectively. Moreover, on a water-penetration scan, MEL-A2 efficiently formed different lyotropic liquid crystalline phases, including the lamella phase at a wide range of concentrations, indicating its excellent surface-active and self-assembling properties. The novel strain of the genus Pseudozyma should thus facilitate the application of glycolipid biosurfactants in combination with other MEL producers. PMID:21606002

  3. The Dizzying Depths of the Cylindrical Mirror

    Science.gov (United States)

    DeWeerd, Alan J.; Hill, S. Eric

    2005-02-01

    A typical introduction to geometrical optics treats plane and spherical mirrors. At first glance, it may be surprising that texts seldom mention the cylindrical mirror, except for the occasional reference to use in fun houses and to viewing anamorphic art.1,2 However, even a cursory treatment reveals its complexity. Holzberlein used an extended object to qualitatively illustrate that images are produced both before and behind a concave cylindrical mirror.3 He also speculated on how this extreme astigmatism results in an observer's dizziness. By considering a simple point object, we make a more detailed analysis of the cylindrical mirror and the dizziness it induces. First, we illustrate how rays from a point object reflect to form not one point image but two line images. Next, we describe how an observer perceives a likeness of the object. Finally, we suggest how confusing depth cues induce dizziness. Although we focus on the concave cylindrical mirror, the discussion is easy to generalize to the convex cylindrical mirror.

  4. The influence of some factors on β-1,4-xylanase activity of the filamentous fungus Trichoderma reesei QM9414

    Directory of Open Access Journals (Sweden)

    Alexandru Manoliu

    2012-03-01

    Full Text Available The mesophyllic fungus Trichoderma reesei (anamorph to Hypocrea jecorina is an important biotechnological tool, known for its ability to secrete large quantities of hydrolytic enzymes. Renewable biomass, such as agricultural and forest wastes are used to produce microbial enzymes in various industrial processes such as food, feed and bioethanol industries. In raw biomass materials, such as wheat straws, barley straws and maize stalks, the main polysaccharide is cellulose which is closely associated with hemicelluloses like xylan, manan and xyloguclan. In consequence, the hydrolysis of these materials requires the concerted action of several enzymes, namely cellulases and xylanases. Endo-xylanase (endo-1,4--xylanase, EC 3.2.1.8 is the key enzyme involved in xylan hydrolysis, the mainhemicellulosic component of plant cell walls. The metabolic activity and enzyme productivity of Trichoderma reesei isinfluenced by various environmental conditions. In this context, we analysed the effect of pH, cultivation period, thenature of the substrate used and the nitrogen source on enzymatic activity. The maximum xylanase yield was recorded at a initial pH of 4 (116.189 IU/ml for barley and 5 for wheat (88.578 IU/ml, respectively maize (116.583 IU/ml. The bestsubstrate for endo-xylanase activity was maize stalks (90.446 IU/ml at a a concentration of 30g/L.

  5. Phytopatological monitoring of Inonotus rickii and GPS-GIS applications, Rome, Italy

    Directory of Open Access Journals (Sweden)

    Moriondo M

    2008-06-01

    Full Text Available Plant disease management may be improved by collecting, storing, manipulating, analysing and displaying epidemiological information using a Geographic Information System (GIS, a useful tool to evaluate plant disease problems in a spatial context. In this study, GIS analysis was applied along with global positioning systems (GPS to integrate field data-collected with the spatial distribution of the pathogen Inonotus rickii. This pathogen provokes a decay of sapwood/heartwood and cankers, determining a progressive crown dieback and structural weakness of the trees, therefore increasing risk of branch breaks and tree failures. It is widespread in tropical and subtropical countries and it has already been recorded in many areas in Rome on Acer negundo, Albizia julibrissin, Koelreuteria paniculata, Celtis australis and Platanus x acerifolia. A survey was carried out in different boulevards of A. negundo and A. julibrissin with the aim of evaluating disease symptoms such as sparse foliage, dead twigs and branches, wood decay and presence of fungal structures. In this survey, I. rickii was recorded also on Robinia pseudoacacia, which is a new host. The study allowed to obtain thematic maps showing the spatial distribution of all infected trees, as well as the presence of anamorph and/or teleomorph structures of the fungus. Moreover, a map representing the incidence of the pathogen in different boulevards was obtained. The usefulness of GIS analysis in studies aimed to support and refine management strategies for disease control in urban trees is discussed.

  6. Four species of Zygophiala (Schizothyriaceae, Capnodiales) are associated with the sooty blotch and flyspeck complex on apple.

    Science.gov (United States)

    Batzer, Jean Carlson; Arias, Maria Mercedes Diaz; Harrington, Thomas C; Gleason, Mark L; Groenewald, Johannes Z; Crous, Pedro W

    2008-01-01

    Sooty blotch and flyspeck (SBFS) is a complex of fungi that cause late-season blemishes of apple and pear fruit that cosmetically damage the cuticle, which result in fruit that are unacceptable to consumers. Previous studies reported that a single, wide-host-range species, Schizothyrium pomi (presumed anamorph Zygophiala jamaicensis), caused flyspeck on apple. In the present study we compared morphology and DNA phylogeny (ITS, LSU) of 139 fungal strains isolated from flyspeck signs from 39 apple orchards in 14 midwestern and eastern states (USA). Parsimony analysis, supported by cultural characteristics and morphology in vitro, provided support to delimit the flyspeck isolates into four species of Zygophiala, two of which are known to be sexual. Three of these species are described as new. Based on DNA phylogeny, species of Schizothyrium were shown to cluster with members of the genus Mycosphaerella in the Capnodiales, having similar asci and ascospores but morphologically distinct ascomata. These data question the value of ascomatal morphology at the ordinal level, although it still appears to be relevant at the family level, delimiting the thyrothecial Schizothyriaceae from other families in the Capnodiales. PMID:18592899

  7. The Hypocrea jecorina (Trichoderma reesei hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding region of the wild-type genome

    Directory of Open Access Journals (Sweden)

    Hartl Lukas

    2008-07-01

    Full Text Available Abstract Background The hypercellulolytic mutant Hypocrea jecorina (anamorph Trichoderma reesei RUT C30 is the H. jecorina strain most frequently used for cellulase fermentations and has also often been employed for basic research on cellulase regulation. This strain has been reported to contain a truncated carbon catabolite repressor gene cre1 and is consequently carbon catabolite derepressed. To date this and an additional frame-shift mutation in the glycoprotein-processing β-glucosidase II encoding gene are the only known genetic differences in strain RUT C30. Results In the present paper we show that H. jecorina RUT C30 lacks an 85 kb genomic fragment, and consequently misses additional 29 genes comprising transcription factors, enzymes of the primary metabolism and transport proteins. This loss is already present in the ancestor of RUT C30 – NG 14 – and seems to have occurred in a palindromic AT-rich repeat (PATRR typically inducing chromosomal translocations, and is not linked to the cre1 locus. The mutation of the cre1 locus has specifically occurred in RUT C30. Some of the genes that are lacking in RUT C30 could be correlated with pronounced alterations in its phenotype, such as poor growth on α-linked oligo- and polyglucosides (loss of maltose permease, or disturbance of osmotic homeostasis. Conclusion Our data place a general caveat on the use of H. jecorina RUT C30 for further basic research.

  8. A versatile toolkit for high throughput functional genomics with Trichoderma reesei

    Directory of Open Access Journals (Sweden)

    Schuster André

    2012-01-01

    Full Text Available Abstract Background The ascomycete fungus, Trichoderma reesei (anamorph of Hypocrea jecorina, represents a biotechnological workhorse and is currently one of the most proficient cellulase producers. While strain improvement was traditionally accomplished by random mutagenesis, a detailed understanding of cellulase regulation can only be gained using recombinant technologies. Results Aiming at high efficiency and high throughput methods, we present here a construction kit for gene knock out in T. reesei. We provide a primer database for gene deletion using the pyr4, amdS and hph selection markers. For high throughput generation of gene knock outs, we constructed vectors using yeast mediated recombination and then transformed a T. reesei strain deficient in non-homologous end joining (NHEJ by spore electroporation. This NHEJ-defect was subsequently removed by crossing of mutants with a sexually competent strain derived from the parental strain, QM9414. Conclusions Using this strategy and the materials provided, high throughput gene deletion in T. reesei becomes feasible. Moreover, with the application of sexual development, the NHEJ-defect can be removed efficiently and without the need for additional selection markers. The same advantages apply for the construction of multiple mutants by crossing of strains with different gene deletions, which is now possible with considerably less hands-on time and minimal screening effort compared to a transformation approach. Consequently this toolkit can considerably boost research towards efficient exploitation of the resources of T. reesei for cellulase expression and hence second generation biofuel production.

  9. Small-Angle Neutron Scattering Reveals pH-Dependent Conformational Changes in Trichoderma reesei Cellobiohydrolase I: Implications for Enzymatic Activity

    Energy Technology Data Exchange (ETDEWEB)

    Pingali, Sai Venkatesh [ORNL; O' Neill, Hugh Michael [ORNL; McGaughey, Joseph [ORNL; Urban, Volker S [ORNL; Rempe, Caroline S [ORNL; Petridis, Loukas [ORNL; Smith, Jeremy C [ORNL; Evans, Barbara R [ORNL; Heller, William T [ORNL

    2011-01-01

    Cellobiohydrolase I (Cel7A) of the fungus Trichoderma reesei (now classified as an anamorph of Hypocrea jecorina) hydrolyzes crystalline cellulose to soluble sugars, making it of key interest for producing fermentable sugars from biomass for biofuel production. The activity of the enzyme is pH-dependent, with its highest activity occurring at pH 4 5. To probe the response of the solution structure of Cel7A to changes in pH, we measured small angle neutron scattering of it in a series of solutions having pH values of 7.0, 6.0, 5.3, and 4.2. As the pH decreases from 7.0 to 5.3, the enzyme structure remains well defined, possessing a spatial differentiation between the cellulose binding domain and the catalytic core that only changes subtly. At pH 4.2, the solution conformation of the enzyme changes to a structure that is intermediate between a properly folded enzyme and a denatured, unfolded state, yet the secondary structure of the enzyme is essentially unaltered. The results indicate that at the pH of optimal activity, the catalytic core of the enzyme adopts a structure in which the compact packing typical of a fully folded polypeptide chain is disrupted and suggest that the increased range of structures afforded by this disordered state plays an important role in the increased activity of Cel7A through conformational selection.

  10. A versatile toolkit for high throughput functional genomics with Trichoderma reesei

    Energy Technology Data Exchange (ETDEWEB)

    Schuster, Andre; Bruno, Kenneth S.; Collett, James R.; Baker, Scott E.; Seiboth, Bernhard; Kubicek, Christian P.; Schmoll, Monika

    2012-01-02

    The ascomycete fungus, Trichoderma reesei (anamorph of Hypocrea jecorina), represents a biotechnological workhorse and is currently one of the most proficient cellulase producers. While strain improvement was traditionally accomplished by random mutagenesis, a detailed understanding of cellulase regulation can only be gained using recombinant technologies. RESULTS: Aiming at high efficiency and high throughput methods, we present here a construction kit for gene knock out in T. reesei. We provide a primer database for gene deletion using the pyr4, amdS and hph selection markers. For high throughput generation of gene knock outs, we constructed vectors using yeast mediated recombination and then transformed a T. reesei strain deficient in non-homologous end joining (NHEJ) by spore electroporation. This NHEJ-defect was subsequently removed by crossing of mutants with a sexually competent strain derived from the parental strain, QM9414.CONCLUSIONS:Using this strategy and the materials provided, high throughput gene deletion in T. reesei becomes feasible. Moreover, with the application of sexual development, the NHEJ-defect can be removed efficiently and without the need for additional selection markers. The same advantages apply for the construction of multiple mutants by crossing of strains with different gene deletions, which is now possible with considerably less hands-on time and minimal screening effort compared to a transformation approach. Consequently this toolkit can considerably boost research towards efficient exploitation of the resources of T. reesei for cellulase expression and hence second generation biofuel production.

  11. Mutagenesis and evaluation of cellulase properties and cellulose hydrolysis of Talaromyces piceus.

    Science.gov (United States)

    He, Ronglin; Cai, Pengli; Wu, Gaihong; Zhang, Can; Zhang, Dongyuan; Chen, Shulin

    2015-11-01

    A fungal species with a high yield of β-glucosidase was isolated and identified as Talaromyces piceus 9-3 (anamorph: Penicillium piceum) by morphological and molecular characterization. Through dimethyl sulphate mutagenesis, the cellulase over-producing strain T. piceus H16 was obtained. The FPase activity and β-glucosidase activity of T. piceus H16 were 5.83 and 53.12 IU ml(-1) respectively--a 5.34- and 4.43-times improvement from the parent strain T. piceus 9-3. The optimum pH and temperature for enzyme activity were pH 5.0 and 50 °C for FPase activity and pH 5.0 and 55 °C for β-glucosidase activity, respectively. The cellulase were quite stable at 37 °C, only losing Trichoderma reesei RUT C30 on hydrolyzing different substrates due to the high β-glucosidase activity of T. piceus H16. These data suggest that T. piceus H16 can be used as a potential cellulase producer with good prospects. PMID:26330062

  12. Diurnal variations of airborne fungal spores concentration in the town and rural area

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    Idalia Kasprzyk

    2012-12-01

    Full Text Available Airborne fungal spores were monitored in 2001-2002 in Rzeszów (town and its neighborhood. The aim of investigations was to ascertain if there were differences in diurnal variations of airborne fungal spores concentration between town and rural area. The sampling was carried out using volumetric method. Traps were located at the same heights - app. 12 m. Airborne spores were sampled continuously. Microscopical slides were prepared for each day. Analysis was carried out on one longitudinal band of 48 mm long divided into 24 segments corresponding following hours of day. The results were expressed as mean number of fungal spores per cubic meter per 24 hours. For this survey, five geni of allergenic fungi were selected: Alternaria, Botrytis, Cladosporium, Epicoccum, Ganoderma. The concentrations of their airborne spores were high or very high. It was calculated theoretical day, where the hourly count was the percentage mean of number of spores at that time every chosen day without rainfall from 2001 and 2001 years. The diurnal periodicity of Alternaria, Cladosporium, Epicoccum and Ganoderma showed one peak, while Botrytis two. Anamorphic spores peaked in the afternoon, while their minima occurred in the morning. The highest concentrations of Ganoderma basidiospores were at down or at night, but minima during the day. There were no clear differences in the peak values between two studied sites. The results indicate that maximum concentrations of all spores generally occurred a few hour earlier in the rural area than in the town. Probably, in the rural area airborne spores came from many local sources and their diurnal periodicity reflected rhythm of spore liberation. Towns are characterized by specific microclimate with higher temperature and wind blowing to the centre. In Rzeszów fungal spores could be transported outside and carried out by wind from distant sources. This study showed, among others, that habitat conditions are an important factors

  13. Performance comparison of polynomial representations for optimizing optical freeform systems

    Science.gov (United States)

    Brömel, A.; Gross, H.; Ochse, D.; Lippmann, U.; Ma, C.; Zhong, Y.; Oleszko, M.

    2015-09-01

    Optical systems can benefit strongly from freeform surfaces, however the choice of the right representation isn`t an easy one. Classical representations like X-Y-polynomials, as well as Zernike-polynomials are often used for such systems, but should have some disadvantage regarding their orthogonality, resulting in worse convergence and reduced quality in final results compared to newer representations like the Q-polynomials by Forbes. Additionally the supported aperture is a circle, which can be a huge drawback in case of optical systems with rectangular aperture. In this case other representations like Chebyshev-or Legendre-polynomials come into focus. There are a larger number of possibilities; however the experience with these newer representations is rather limited. Therefore in this work the focus is on investigating the performance of four widely used representations in optimizing two ambitious systems with very different properties: Three-Mirror-Anastigmat and an anamorphic System. The chosen surface descriptions offer support for circular or rectangular aperture, as well as different grades of departure from rotational symmetry. The basic shapes are for example a conic or best-fit-sphere and the polynomial set is non-, spatial or slope-orthogonal. These surface representations were chosen to evaluate the impact of these aspects on the performance optimization of the two example systems. Freeform descriptions investigated here were XY-polynomials, Zernike in Fringe representation, Q-polynomials by Forbes, as well as 2-dimensional Chebyshev-polynomials. As a result recommendations for the right choice of freeform surface representations for practical issues in the optimization of optical systems can be given.

  14. Phylogenetic and morphotaxonomic revision of Ramichloridium and allied genera.

    Science.gov (United States)

    Arzanlou, M; Groenewald, J Z; Gams, W; Braun, U; Shin, H-D; Crous, P W

    2007-01-01

    The phylogeny of the genera Periconiella, Ramichloridium, Rhinocladiella and Veronaea was explored by means of partial sequences of the 28S (LSU) rRNA gene and the ITS region (ITS1, 5.8S rDNA and ITS2). Based on the LSU sequence data, ramichloridium-like species segregate into eight distinct clusters. These include the Capnodiales (Mycosphaerellaceae and Teratosphaeriaceae), the Chaetothyriales (Herpotrichiellaceae), the Pleosporales, and five ascomycete clades with uncertain affinities. The type species of Ramichloridium, R. apiculatum, together with R. musae, R. biverticillatum, R. cerophilum, R. verrucosum, R. pini, and three new species isolated from Strelitzia, Musa and forest soil, respectively, reside in the Capnodiales clade. The human-pathogenic species R. mackenziei and R. basitonum, together with R. fasciculatum and R. anceps, cluster with Rhinocladiella (type species: Rh. atrovirens, Herpotrichiellaceae, Chaetothyriales), and are allocated to this genus. Veronaea botryosa, the type species of the genus Veronaea, also resides in the Chaetothyriales clade, whereas Veronaea simplex clusters as a sister taxon to the Venturiaceae (Pleosporales), and is placed in a new genus, Veronaeopsis. Ramichloridium obovoideum clusters with Carpoligna pleurothecii (anamorph: Pleurothecium sp., Chaetosphaeriales), and a new combination is proposed in Pleurothecium. Other ramichloridium-like clades include R. subulatum and R. epichloës (incertae sedis, Sordariomycetes), for which a new genus, Radulidium is erected. Ramichloridium schulzeri and its varieties are placed in a new genus, Myrmecridium (incertae sedis, Sordariomycetes). The genus Pseudovirgaria (incertae sedis) is introduced to accommodate ramichloridium-like isolates occurring on various species of rust fungi. A veronaea-like isolate from Bertia moriformis with phylogenetic affinity to the Annulatascaceae (Sordariomycetidae) is placed in a new genus, Rhodoveronaea. Besides Ramichloridium, Periconiella is also

  15. Phylogenetic and morphotaxonomic revision of Ramichloridium and allied genera

    Science.gov (United States)

    Arzanlou, M.; Groenewald, J.Z.; Gams, W.; Braun, U.; Shin, H.-D; Crous, P.W.

    2007-01-01

    The phylogeny of the genera Periconiella, Ramichloridium, Rhinocladiella and Veronaea was explored by means of partial sequences of the 28S (LSU) rRNA gene and the ITS region (ITS1, 5.8S rDNA and ITS2). Based on the LSU sequence data, ramichloridium-like species segregate into eight distinct clusters. These include the Capnodiales (Mycosphaerellaceae and Teratosphaeriaceae), the Chaetothyriales (Herpotrichiellaceae), the Pleosporales, and five ascomycete clades with uncertain affinities. The type species of Ramichloridium, R. apiculatum, together with R. musae, R. biverticillatum, R. cerophilum, R. verrucosum, R. pini, and three new species isolated from Strelitzia, Musa and forest soil, respectively, reside in the Capnodiales clade. The human-pathogenic species R. mackenziei and R. basitonum, together with R. fasciculatum and R. anceps, cluster with Rhinocladiella (type species: Rh. atrovirens, Herpotrichiellaceae, Chaetothyriales), and are allocated to this genus. Veronaea botryosa, the type species of the genus Veronaea, also resides in the Chaetothyriales clade, whereas Veronaea simplex clusters as a sister taxon to the Venturiaceae (Pleosporales), and is placed in a new genus, Veronaeopsis. Ramichloridium obovoideum clusters with Carpoligna pleurothecii (anamorph: Pleurothecium sp., Chaetosphaeriales), and a new combination is proposed in Pleurothecium. Other ramichloridium-like clades include R. subulatum and R. epichloës (incertae sedis, Sordariomycetes), for which a new genus, Radulidium is erected. Ramichloridium schulzeri and its varieties are placed in a new genus, Myrmecridium (incertae sedis, Sordariomycetes). The genus Pseudovirgaria (incertae sedis) is introduced to accommodate ramichloridium-like isolates occurring on various species of rust fungi. A veronaea-like isolate from Bertia moriformis with phylogenetic affinity to the Annulatascaceae (Sordariomycetidae) is placed in a new genus, Rhodoveronaea. Besides Ramichloridium, Periconiella is also

  16. Beam shaping in high-power laser systems with using refractive beam shapers

    Science.gov (United States)

    Laskin, Alexander; Laskin, Vadim

    2012-06-01

    Beam Shaping of the spatial (transverse) profile of laser beams is highly desirable by building optical systems of high-power lasers as well in various applications with these lasers. Pumping of the crystals of Ti:Sapphire lasers by the laser radiation with uniform (flattop) intensity profile improves performance of these ultrashort pulse high-power lasers in terms of achievable efficiency, peak-power and stability, output beam profile. Specifications of the solid-state lasers built according to MOPA configuration can be also improved when radiation of the master oscillator is homogenized and then is amplified by the power amplifier. Features of building these high power lasers require that a beam shaping solution should be capable to work with single mode and multimode beams, provide flattop and super-Gauss intensity distributions, the consistency and divergence of a beam after the intensity re-distribution should be conserved and low absorption provided. These specific conditions are perfectly fulfilled by the refractive field mapping beam shapers due to their unique features: almost lossless intensity profile transformation, low output divergence, high transmittance and flatness of output beam profile, extended depth of field, adaptability to real intensity profiles of TEM00 and multimode laser sources. Combining of the refractive field mapping beam shapers with other optical components, like beam-expanders, relay imaging lenses, anamorphic optics makes it possible to generate the laser spots of necessary shape, size and intensity distribution. There are plenty of applications of high-power lasers where beam shaping bring benefits: irradiating photocathode of Free Electron Lasers (FEL), material ablation, micromachining, annealing in display making techniques, cladding, heat treating and others. This paper will describe some design basics of refractive beam shapers of the field mapping type, with emphasis on the features important for building and applications

  17. Adiciones a la Biota de Uredinales (fungi de Colombia Addictions to the Uredinales Biota (fungi in Colombia

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    Katherin Maritza Vanegas Berrouet

    2011-12-01

    Full Text Available Colecciones de plantas con síntomas de hongos royas (Uredinales, Basidiomycota realizadas en los últimos años en los departamentos de Amazonas, Antioquia, Caldas, Cundinamarca, Tolima y Valle del Cauca han sido estudiadas y depositadas en el Museo Micológico de la Universidad Nacional de Colombia, Sede Medellín (MMUNM. Entre las novedades encontradas, se registran por primera vez para Colombia las royas: Puccinia investita, Sphenospora pallida, Crossopsora piperis, Uredo psychotriicola y Pucciniosira solani. Se adiciona la familia botánica Dioscoreaceae para la Biota de Uredinales colombianos. Se hace la corrección del nombre anamórfico Uredo parthenii publicado para Colombia en 2003, por el nombre teliomorfico válido Puccinia schileana. Son registrados seis nuevos hospedantes parasitados por royas en Colombia, entre estos reviste importancia la colección sobre Origanum vulgare L. una planta aromática y medicinal cultivada mundialmente.Plant collections with symptoms of rusts fungi (Uredinales, Basidiomycota made during recent years in provinces of Amazonas, Antioquia, Caldas, Cundinamarca, Tolima and Valle del Cauca have been studied and deposited in Museo Micológico of Universidad Nacional de Colombia, Sede Medellín (MMUNM. The rusts species Puccinia investita, Sphenospora pallida, Crossopsora piperis, Uredo psychotriicola and Pucciniosira solani are new records for Colombia. A first record for this country of rust fungi in plants of family Dioscoreaceae has been also made. The anamorphic name Uredo parthenii published in 2003 in Colombia, has been corrected by the valid teleomorph Puccinia schileana. Finally, six new hosts parasitized by rusts are recorded, including Origanum vulgare L. a world-wide important aromatic and medicinal plant.

  18. Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process

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    Druzhinina Irina S

    2007-12-01

    Full Text Available Abstract Background In fungi, light is primarily known to influence general morphogenesis and both sexual and asexual sporulation. In order to expand the knowledge on the effect of light in fungi and to determine the role of the light regulatory protein ENVOY in the implementation of this effect, we performed a global screen for genes, which are specifically effected by light in the fungus Hypocrea jecorina (anamorph Trichoderma reesei using Rapid Subtraction Hybridization (RaSH. Based on these data, we analyzed whether these genes are influenced by ENVOY and if overexpression of ENVOY in darkness would be sufficient to execute its function. Results The cellular functions of the detected light responsive genes comprised a variety of roles in transcription, translation, signal transduction, metabolism, and transport. Their response to light with respect to the involvement of ENVOY could be classified as follows: (i ENVOY-mediated upregulation by light; (ii ENVOY-independent upregulation by light; (iii ENVOY-antagonized upregulation by light; ENVOY-dependent repression by light; (iv ENVOY-independent repression by light; and (v both positive and negative regulation by ENVOY of genes not responsive to light in the wild-type. ENVOY was found to be crucial for normal growth in light on various carbon sources and is not able to execute its regulatory function if overexpressed in the darkness. Conclusion The different responses indicate that light impacts fungi like H. jecorina at several cellular processes, and that it has both positive and negative effects. The data also emphasize that ENVOY has an apparently more widespread cellular role in this process than only in modulating the response to light.

  19. HONGOS NATIVOS CON POTENCIAL DEGRADADOR DE TINTES INDUSTRIALES EN EL VALLE DE ABURRÁ, COLOMBIA NATIVE FUNGI WITH INDUSTRIAL DYE DEGRADING POTENTIAL IN THE ABURRÁ VALLEY, COLOMBIA

    Directory of Open Access Journals (Sweden)

    Xiomara Chanagá Vera

    2012-06-01

    Full Text Available Resumen. Los colorantes industriales poseen estructuras químicas estables que dificultan su tratamiento mediante procesos fisicoquímicos convencionales. En los últimos años, como una alternativa biotecnológica para la degradación de compuestos recalcitrantes, se han utilizado hongos ligninolíticos de diferentes grupos taxonómicos, que producen enzimas oxidantes de dichas moléculas. El aislamiento e identificación de especies fúngicas nativas con potencial decolorante, resulta promisorio para biorremediar efluentes provenientes de industrias textiles. En esta investigación se identificaron, con base en análisis de secuencias de las regiones ITS1 e ITS2 y 28S del ADNr, y por sus características morfológicas, cuatro hongos nativos aislados de material lignocelulósico colectado en el Valle de Aburrá (Antioquia, Colombia. Los aislamientos fueron identificados como el ascomycete Leptosphaerulina sp., y los hongos anamórficos Trichoderma viride (dos cepas y Aspergillus niger.Abstract. Synthetic dyes have stable chemical structures that hinder their treatment by conventional physicochemical processes. In recent years, as a biotechnological alternative for degradation of these recalcitrant compounds, wood degrading fungi of different taxonomic groups have been used. These fungi produced enzymes with oxidative potential for those molecules. The isolation and identification of ligninolytic fungi with potential for discoloration is promising for bioremediation of effluents from textile industries. In this research, we identified four native fungi isolated from lignocellulosic material in the Aburra Valley (Antioquia, Colombia. Identification was made based on sequence analysis of ITS1-ITS2 regions and 28S rDNA as well as morphological characteristics. The fungi were identified as the ascomycete Leptosphaerulina sp., and the anamorphic species Trichoderma viride (two strains and Aspergillus niger.

  20. Phylogenetic and morphotaxonomic revision of Ramichloridium and allied genera

    Directory of Open Access Journals (Sweden)

    H.-D Shin

    2007-08-01

    Full Text Available The phylogeny of the genera Periconiella, Ramichloridium, Rhinocladiella and Veronaea was explored by means of partial sequences of the 28S (LSU rRNA gene and the ITS region (ITS1, 5.8S rDNA and ITS2. Based on the LSU sequence data, ramichloridium-like species segregate into eight distinct clusters. These include the Capnodiales (Mycosphaerellaceae and Teratosphaeriaceae, the Chaetothyriales (Herpotrichiellaceae, the Pleosporales, and five ascomycete clades with uncertain affinities. The type species of Ramichloridium, R. apiculatum, together with R. musae, R. biverticillatum, R. cerophilum, R. verrucosum, R. pini, and three new species isolated from Strelitzia, Musa and forest soil, respectively, reside in the Capnodiales clade. The human-pathogenic species R. mackenziei and R. basitonum, together with R. fasciculatum and R. anceps, cluster with Rhinocladiella (type species: Rh. atrovirens, Herpotrichiellaceae, Chaetothyriales, and are allocated to this genus. Veronaea botryosa, the type species of the genus Veronaea, also resides in the Chaetothyriales clade, whereas Veronaea simplex clusters as a sister taxon to the Venturiaceae (Pleosporales, and is placed in a new genus, Veronaeopsis. Ramichloridium obovoideum clusters with Carpoligna pleurothecii (anamorph: Pleurothecium sp., Chaetosphaeriales, and a new combination is proposed in Pleurothecium. Other ramichloridium-like clades include R. subulatum and R. epichloës (incertae sedis, Sordariomycetes, for which a new genus, Radulidium is erected. Ramichloridium schulzeri and its varieties are placed in a new genus, Myrmecridium (incertae sedis, Sordariomycetes. The genus Pseudovirgaria (incertae sedis is introduced to accommodate ramichloridium-like isolates occurring on various species of rust fungi. A veronaea-like isolate from Bertia moriformis with phylogenetic affinity to the Annulatascaceae (Sordariomycetidae is placed in a new genus, Rhodoveronaea. Besides Ramichloridium, Periconiella

  1. Preliminary in vitro insights into the use of natural fungal pathogens of leaf-cutting ants as biocontrol agents.

    Science.gov (United States)

    Folgarait, Patricia; Gorosito, Norma; Poulsen, Michael; Currie, Cameron R

    2011-09-01

    Leaf-cutting ants are one of the main herbivores of the Neotropics, where they represent an important agricultural pest. These ants are particularly difficult to control because of the complex network of microbial symbionts. Leaf-cutting ants have traditionally been controlled through pesticide application, but there is a need for alternative, more environmentally friendly, control methods such as biological control. Potential promising biocontrol candidates include the microfungi Escovopsis spp. (anamorphic Hypocreales), which are specialized pathogens of the fungi the ants cultivate for food. These pathogens are suppressed through ant behaviors and ant-associated antibiotic-producing Actinobacteria. In order to be an effective biocontrol agent, Escovopsis has to overcome these defenses. Here, we evaluate, using microbial in vitro assays, whether defenses in the ant-cultivated fungus strain (Leucoagaricus sp.) and Actinobacteria from the ant pest Acromyrmex lundii have the potential to limit the use of Escovopsis in biocontrol. We also explore, for the first time, possible synergistic biocontrol between Escovopsis and the entomopathogenic fungus Lecanicillium lecanii. All strains of Escovopsis proved to overgrow A. lundii cultivar in less than 7 days, with the Escovopsis strain isolated from a different leaf-cutting ant species being the most efficient. Escovopsis challenged with a Streptomyces strain isolated from A. lundii did not exhibit significant growth inhibition. Both results are encouraging for the use of Escovopsis as a biocontrol agent. Although we found that L. lecanii can suppress the growth of the cultivar, it also had a negative impact on Escovopsis, making the success of simultaneous use of these two fungi for biocontrol of A. lundii questionable. PMID:21739253

  2. The epidemiology and mating behavior of Arthroderma benhamiae var. erinacei in household four-toed hedgehogs (Atelerix albiventris) in Japan.

    Science.gov (United States)

    Takahashi, Yoko; Sano, Ayako; Takizawa, Kayoko; Fukushima, Kazutaka; Miyaji, Makoto; Nishimura, Kazuko

    2003-01-01

    An epidemiological survey of Trichophyton mentagrophytes var. erinacei in the household hedgehog and other rodents was made between January 17, 2002 and February 28, 2002 in Japan. Quills and hairs were collected from sources identified via the internet. The fungus was isolated only from the quills of four-toed hedgehogs (7/18; 39%) from Kanto to Kyushu regions. Isolates were examined morphologically, physiologically and genetically, and identified as T. mentagrophytes var. erinacei anamorph. The isolates were also genetically compared with European hedgehog (Erinaceus europeus)-borne T. mentagrophytes var. erinacei and Kenyan hedgehog (Aterelix albiventris)-borne Arthroderma benhamiae, and their genotypes of the ITS1-5.8S-ITS2 rDNA were all identical. The isolates were crossed with A. benhamiae Americano-European race and African race, A. vanbreuseghemii and A. simii, with the result that they mated only with African race (+) or (-). Mating types of the isolates were (+) in 6 isolates and (-) in one. An intra-isolate mating between one of the 6 plus isolates and the minus one formed abundant mature gymnothesia, the mating type ratio of the F1 progeny was approximately 1:1, and the sib crossings of F1 progeny produced abundant fertile gymnothesia. The present study revealed that the intra-Japanese hedgehog-borne isolate crossing showed complete fertility and that the sexual degeneration pointed out by Takashio (Mycologia 71: 968-976, 1979) did not exist. Two pairs of mating, (+) and (-) mating types of Japanese isolates with (-) and (+) tester strains of A. benhamiae African race formed less gymnothesia, mating type ratios were unbalanced, and sib crossings of F1 progeny produced small gymnothesia containing a low number of asci, pseudogymothesia, or none, respectively. These results show that A. benhamiae var. erinacei, the teleomorph of T. mentagrophytes var. erinacei, belongs to a different mating group (e.g. hedgehog race) than the Americano-European and

  3. Heterologous overexpression of Glomerella cingulata FAD-dependent glucose dehydrogenase in Escherichia coli and Pichia pastoris

    Science.gov (United States)

    2011-01-01

    Background FAD dependent glucose dehydrogenase (GDH) currently raises enormous interest in the field of glucose biosensors. Due to its superior properties such as high turnover rate, substrate specificity and oxygen independence, GDH makes its way into glucose biosensing. The recently discovered GDH from the ascomycete Glomerella cingulata is a novel candidate for such an electrochemical application, but also of interest to study the plant-pathogen interaction of a family of wide-spread, crop destroying fungi. Heterologous expression is a necessity to facilitate the production of GDH for biotechnological applications and to study its physiological role in the outbreak of anthracnose caused by Glomerella (anamorph Colletotrichum) spp. Results Heterologous expression of active G. cingulata GDH has been achieved in both Escherichia coli and Pichia pastoris, however, the expressed volumetric activity was about 4800-fold higher in P. pastoris. Expression in E. coli resulted mainly in the formation of inclusion bodies and only after co-expression with molecular chaperones enzymatic activity was detected. The fed-batch cultivation of a P. pastoris transformant resulted in an expression of 48,000 U L-1 of GDH activity (57 mg L-1). Recombinant GDH was purified by a two-step purification procedure with a yield of 71%. Comparative characterization of molecular and catalytic properties shows identical features for the GDH expressed in P. pastoris and the wild-type enzyme from its natural fungal source. Conclusions The heterologous expression of active GDH was greatly favoured in the eukaryotic host. The efficient expression in P. pastoris facilitates the production of genetically engineered GDH variants for electrochemical-, physiological- and structural studies. PMID:22151971

  4. Fusarium species and fumonisins associated with maize kernels produced in Rio Grande do Sul State for the 2008/09 and 2009/10 growing seasons

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    R. Stumpf

    2013-01-01

    Full Text Available Ear rots caused by Fusarium spp. are among the main fungal diseases that contribute to poor quality and the contamination of maize grains with mycotoxins. This study aimed to determine the visual incidence of fungal-damaged kernels (FDKs, the incidence of two main Gibberella (a teleomorph of Fusarium complexes (G. fujikuroi and G. zeae associated with maize using a seed health blotter test, and the fumonisin levels, using high performance liquid chromatography, in samples of maize grains grown across 23 municipalities during the 2008/09 and 2009/10 growing seasons. Additionally, 104 strains that were representative of all of the analysed samples were identified to species using PCR assays. The mean FDK was seven per cent, and only six of the samples had levels greater than six per cent. Fusarium spp. of the G. fujikuroi complex were present in 96% of the samples, and G. zeae was present in 18% of the samples (5/27. The mean incidence of G. fujikuroi was 58%, and the incidence of G. zeae varied from 2 to 6%. FB1 was found in 58.6%, FB2 in 37.9%, and both toxins in 37.9% of the samples. The FB1 and FB2 levels were below the quantification limits for 41.3% of the samples, and the mean FB1 levels (0.66 µg/g were higher than the mean FB2 levels (0.42 µg/g. The PCR identification separated the 104 isolates into three of the G. fujikuroi complex: F. verticillioides (76%, F. subglutinans (4% and F. proliferatum (2%; and G. zeae (anamorph = F. graminearum (18%. Our results confirmed the dominance of F. verticillioides, similar to other regions of Brazil, but they differed due to the relatively higher incidence of F. graminearum. Total fumonisin levels were below the maximum limit determined by current Brazilian regulations.

  5. Fusarium species and fumonisins associated with maize kernels produced in Rio Grande do Sul State for the 2008/09 and 2009/10 growing seasons.

    Science.gov (United States)

    Stumpf, R; Dos Santos, J; Gomes, L B; Silva, C N; Tessmann, D J; Ferreira, F D; Machinski, M; Del Ponte, E M

    2013-01-01

    Ear rots caused by Fusarium spp. are among the main fungal diseases that contribute to poor quality and the contamination of maize grains with mycotoxins. This study aimed to determine the visual incidence of fungal-damaged kernels (FDKs), the incidence of two main Gibberella (a teleomorph of Fusarium) complexes (G. fujikuroi and G. zeae) associated with maize using a seed health blotter test, and the fumonisin levels, using high performance liquid chromatography, in samples of maize grains grown across 23 municipalities during the 2008/09 and 2009/10 growing seasons. Additionally, 104 strains that were representative of all of the analysed samples were identified to species using PCR assays. The mean FDK was seven per cent, and only six of the samples had levels greater than six per cent. Fusarium spp. of the G. fujikuroi complex were present in 96% of the samples, and G. zeae was present in 18% of the samples (5/27). The mean incidence of G. fujikuroi was 58%, and the incidence of G. zeae varied from 2 to 6%. FB1 was found in 58.6%, FB2 in 37.9%, and both toxins in 37.9% of the samples. The FB1 and FB2 levels were below the quantification limits for 41.3% of the samples, and the mean FB1 levels (0.66 μg/g) were higher than the mean FB2 levels (0.42 μg/g). The PCR identification separated the 104 isolates into three of the G. fujikuroi complex: F. verticillioides (76%), F. subglutinans (4%) and F. proliferatum (2%); and G. zeae (anamorph = F. graminearum) (18%). Our results confirmed the dominance of F. verticillioides, similar to other regions of Brazil, but they differed due to the relatively higher incidence of F. graminearum. Total fumonisin levels were below the maximum limit determined by current Brazilian regulations. PMID:24159288

  6. Genome-wide analysis of the Zn(II)₂Cys₆ zinc cluster-encoding gene family in Aspergillus flavus.

    Science.gov (United States)

    Chang, Perng-Kuang; Ehrlich, Kenneth C

    2013-05-01

    Proteins with a Zn(II)₂Cys₆ domain, Cys-X₂-Cys-X₆-Cys-X₅₋₁₂-Cys-X₂-Cys-X₆₋₉-Cys (hereafter, referred to as the C6 domain), form a subclass of zinc finger proteins found exclusively in fungi and yeast. Genome sequence databases of Saccharomyces cerevisiae and Candida albicans have provided an overview of this family of genes. Annotation of this gene family in most fungal genomes is still far from perfect and refined bioinformatic algorithms are urgently needed. Aspergillus flavus is a saprophytic soil fungus that can produce the carcinogenic aflatoxin. It is the second leading causative agent of invasive aspergillosis. The 37-Mb genome of A. flavus is predicted to encode 12,000 proteins. Two and a half percent of the total proteins are estimated to contain the C6 domain, more than twofold greater than those estimated for yeast, which is about 1 %. The variability in the spacing between cysteines, C₃-C₄ and C₅-C₆, in the zinc cluster enables classification of the domains into distinct subgroups, which are also well conserved in Aspergillus nidulans. Sixty-six percent (202/306) of the A. flavus C6 proteins contain a specific transcription factor domain, and 7 % contain a domain of unknown function, DUF3468. Two A. nidulans C6 proteins containing the DUF3468 are involved in asexual conidiation and another two in sexual differentiation. In the anamorphic A. flavus, a homolog of the latter lacks the C6 domain. A. flavus being heterothallic and reproducing mainly through conidiation appears to have lost some components involved in homothallic sexual development. Of the 55 predicted gene clusters thought to be involved in production of secondary metabolites, only about half have a C6-encoding gene in or near the gene clusters. The features revealed by the A. flavus C6 proteins likely are common for other ascomycete fungi. PMID:23563886

  7. Artificial induction of fruiting body of Ophiocordyceps longissima%长座虫草子实体的人工诱导研究

    Institute of Scientific and Technical Information of China (English)

    刘洋; 潘丹丹; 丁海燕; 李春如; 樊美珍

    2012-01-01

    The fruiting bodies of Ophiocordyceps longissima were cultured successfully using the strain of Hirsutella longissima RCEF3 891, the anamorph of O. longissima, and the effect of different growth factors on fruiting bodies formation was studied in this paper. The results showed that the optimal culture conditions for fruiting bodies of O. longissima were as follows: 9 d of the liquid fermentation period of H. longissima, with addi- tion of 10% animal protein in the medium, pH 6.0 of the nutrient solution, cultivation at 25 ℃, mycelia culture stage under the condition of complete darkness and continuous light (1-200 lx) after covering with mycelia.%首次应用长座虫草的无性型长座被毛孢对长座虫草子实体的生长条件进行了研究,并确立了最佳的培养工艺.结果表明,长座被毛孢液体摇瓶最佳培养时间为9d,在营养液中添加10%的动物性蛋白(黄粉虫粉)有助于提高子实体产量,其所需营养液最佳pH为6.0,培养温度为25℃,初期菌丝培养时间为完全黑暗培养,待菌丝长满后给予1 ~ 200 lx连续光照,可获得更多的子实体.

  8. Characterisation of yeasts isolated from ‘Nduja of Spilinga

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    Filippo Giarratana

    2014-04-01

    Full Text Available The ‘Nduja of Spilinga protected geographical indication (PGI is a spreadable italian salami, obtained by using fat (50%, lean of pork (25%, chili pepper (25% and NaCl, stuffed into natural pork casing. Its predominant flora is represented by yeasts, reaching at the end of seasoning values of 6 log CFU/g. Considering the need to enhance and protect traditional local products, it seemed interesting to carry out a characterisation of yeasts of the ‘Nduja of Spilinga PGI. A total of 127 strains of yeast isolated from samples of ‘Nduja of Spilinga PGI (79 strains from samples at different days of curing and 48 from samples of commerce was subjected to morphological identification, hydrolysis of urea, lipolytic activity and identification with API 20C AUX, ID 32C and simplified identification systems. One hundred twenty three (96.8% strains were attributable to the phylum Ascomycetes (urease-negative, the remaining 4 strains (3.2% were Basidiomycetes (urease-positive. Debaryomyces hansenii and its anamorph shape, Candida famata, represented the most prevalent species (61.42 and 17.32% respectively, followed by Candida glabrata (8.66%, Pichia (Candida guilliermondii (5.17%, Candida parapsilosis and Rhodotorula glutinis (1.57%. Candida catenulata, Criptococcus uniguttulatus, Rhodotorula minuta, Candida zeylanoides and Candida utilis were observed with 0.79%. The lipolytic activity was observed only in 10 strains of D. hansenii and in one of C. zeylanoides. Further investigation will contribute to the selection of indigenous strains that could be used for the creation of specific starter, useful to improve the process of characterisation of the ‘Nduja of Spilinga and also to guarantee its safety.

  9. A PCA-based hyperspectral approach to detect infections by mycophilic fungi on dried porcini mushrooms (boletus edulis and allied species).

    Science.gov (United States)

    Bagnasco, Lucia; Zotti, Mirca; Sitta, Nicola; Oliveri, Paolo

    2015-11-01

    Mycophilic fungi of anamorphic genus Sepedonium (telomorphs in Hypomyces, Hypocreales, Ascomycota) infect and parasitize sporomata of boletes. The obligated hosts such as Boletus edulis and allied species (known as "porcini mushrooms") are among the most valued and prized edible wild mushrooms in the world. Sepedonium infections have a great morphological variability: at the initial state, contaminated mushrooms present a white coating covering tubes and pores; at the final state, Sepedonium forms a deep and thick hyphal layer that eventually leads to the total necrosis of the host. Up to date, Sepedonium infections in porcini mushrooms have been evaluated only through macroscopic and microscopic visual analysis. In this study, in order to implement the infection evaluation as a routine methodology for industrial purposes, the potential application of Hyperspectral Imaging (HSI) and Principal Component Analysis (PCA) for detection of Sepedonium presence on sliced and dried B. edulis and allied species was investigated. Hyperspectral images were obtained using a pushbroom line-scanning HSI instrument, operating in the wavelength range between 400 and 1000 nm with 5 nm resolution. PCA was applied on normal and contaminated samples. To reduce the spectral variability caused by factors unrelated to Sepedonium infection, such as scattering effects and differences in sample height, different spectral pre-treatments were applied. A supervised rule was then developed to assign spectra recorded on new test samples to each of the two classes, based on the PC scores. This allowed to visualize directly - within false-color images of test samples - which points of the samples were contaminated. The results achieved may lead to the development of a non-destructive monitoring system for a rapid on-line screening of contaminated mushrooms. PMID:26452951

  10. Molecular Characterization and In Vitro Antifungal Susceptibility of 316 Clinical Isolates of Dermatophytes in Iran.

    Science.gov (United States)

    Ansari, Saham; Hedayati, Mohammad T; Zomorodian, Kamiar; Pakshir, Keyvan; Badali, Hamid; Rafiei, Abdollah; Ravandeh, Mostafa; Seyedmousavi, Seyedmojtaba

    2016-02-01

    Dermatophytosis is a common mycotic infection of the skin, nail, and hair, associated with major public health concern worldwide. Various species of dermatophytes show significant differences in susceptibility to antifungals. Here, we present the antifungal susceptibility of a large collection of molecularly identified dermatophyte isolates obtained from tropical region of south of Iran. A total of 9485 patients clinically suspected to have cutaneous fungal infections were examined. Dermatophytosis was confirmed in 1502 cases by direct microscopy and culture. Three hundred and sixteen isolates recovered in culture were identified to species level using PCR sequencing of ITS region and RFLP. Tinea corporis was the most prevalent type of clinical manifestation (35.2 %), followed by tinea cruris (17 %), tinea capitis (12.8 %), tinea pedis (11.3 %), tinea manuum (11 %), tinea unguium (6.9 %), and tinea barbae (5.8 %). Trichophyton interdigitale was the most common isolate (49.36 %), followed by Trichophyton rubrum (18.98 %), Epidermophyton floccosum (13.29 %), Microsporum canis (9.17 %), Arthroderma benhamiae (T. anamorph of A. benhamiae; 5.38 %), and Trichophyton tonsurans (3.79 %). Overall, irrespective of the geographical region, terbinafine was the most potent antifungal against all isolates, with an MIC range of 0.002-0.25 μg/mL, followed by itraconazole (0.004-0.5 μg/mL), griseofulvin (0.125-8 μg/mL), and fluconazole (4-128 μg/mL). Analysis of our data revealed a significant increase in the frequency of A.benhamiae, which definitely warrants further investigation to explore source of this infection in south of Iran. Moreover, terbinafine was the most effective antifungal against all isolates, in vitro. PMID:26369643

  11. Microbiological quality of chicken thighs meat after four essential oils combination, EDTA and vaccum packing

    Directory of Open Access Journals (Sweden)

    Miroslava Kačániová

    2016-01-01

    Full Text Available The aim of this study was to isolate and identify yeasts in different new wine "federweisser" samples. We collected the samples at the end of the August 2015 and in the middle of the September 2015. Used 15 new wine samples in this study (5 white and 10 red were from the local Slovak winemakers. Irsai Oliver (3, Moravian Muscat (2, Agria/Turan (1, Dornfelder (3, Blue Frankish (3, Pinot Noir (1 and Saint Laurent (2. Three cultivation media were used for detection of yeasts in "federweisser" samples. Malt extract agar base (MEA, Wort agar (WA and Wild yeast medium (WYM were used for the cultivation of yeasts. Cultivation was performed by spread plate method. Ethanol/formic acid extraction procedure was used for preparation of samples. MALDI-TOF Mass Spectrometer (Microflex LT/SH (Bruker Daltonics, Germany was used for the identification of yeasts. We identified seven different strains of Saccharomyces cerevisiae (23; 70%, two strains of Kloeckera apiculata [teleomorph Hanseniaspora uvarum] (7; 21%, and one strain of Pichia kluyveri (1; 3%, Pichia occidentalis [anamorph Candida sorbosa] (1; 3% and Metschnikowia pulcherrima (1; 3% in 15 new wine "federweisser" samples. Saccharomyces cerevisiae was dominant species in each new wine sample, and formed creamy convex colonies with circular edge. Metschnikowia pulcherrima formed convex to pulvinate, circular white-pink colored colonies, Kloeckera apiculata formed flat, circular smooth colonies with turquoise center with gray edge, Pichia occidentalis formed irregular pulvinate light-cream colored colonies, and Pichia kluyveri formed turquoise, convex, undulate and smooth colonies on Malt extract agar base with bromocresol green.

  12. Categorial compositionality III: F-(coalgebras and the systematicity of recursive capacities in human cognition.

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    Steven Phillips

    Full Text Available Human cognitive capacity includes recursively definable concepts, which are prevalent in domains involving lists, numbers, and languages. Cognitive science currently lacks a satisfactory explanation for the systematic nature of such capacities (i.e., why the capacity for some recursive cognitive abilities-e.g., finding the smallest number in a list-implies the capacity for certain others-finding the largest number, given knowledge of number order. The category-theoretic constructs of initial F-algebra, catamorphism, and their duals, final coalgebra and anamorphism provide a formal, systematic treatment of recursion in computer science. Here, we use this formalism to explain the systematicity of recursive cognitive capacities without ad hoc assumptions (i.e., to the same explanatory standard used in our account of systematicity for non-recursive capacities. The presence of an initial algebra/final coalgebra explains systematicity because all recursive cognitive capacities, in the domain of interest, factor through (are composed of the same component process. Moreover, this factorization is unique, hence no further (ad hoc assumptions are required to establish the intrinsic connection between members of a group of systematically-related capacities. This formulation also provides a new perspective on the relationship between recursive cognitive capacities. In particular, the link between number and language does not depend on recursion, as such, but on the underlying functor on which the group of recursive capacities is based. Thus, many species (and infants can employ recursive processes without having a full-blown capacity for number and language.

  13. Seed propagation and re-introduction of the U.S. federally endangered Hawaiian endemic, Platanthera holochila (Hbd. Krzl. (Orchidaceae

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    Lawrence W. Zettler

    2012-02-01

    Full Text Available Platanthera holochila (Hbd. Krzl. [syn = Peristylus holochila (Hbd N. Hallé] is the rarest of three orchids endemic to the Hawaiian Archipelago. As of 2011, 33 individual plants of this U.S. Federally endangered species remained on three islands with only one specimen known to occur on Kauai. This paper presents a summary of experiments aimed at cultivating this species from seed leading to the reintroduction of seedlings. We describe: 1 the mycorrhizal fungi acquired from P. holochila protocorms on Molokai, 2 the role of light vs. dark pretreatment on symbiotic seed germination using a mycorrhizal fungus from Florida, and 3 asymbiotic germination on three media (Murashige and Skoog, Knudson C, P723. Protocorms recovered in situ using seed packets yielded seven strains of a mycorrhizal fungus assignable to the anamorphic genus Epulorhiza Moore, but none of these strains prompted seed germination in vitro. Using the mycorrhizal fungus from Florida, no significant differences were detected between light pre-treatment vs. dark incubation on seed germination or development, but statistical differences were evident among two agar types tested. Seeds sown on acidified (pH 5.0 asymbiotic medium P723 (PhytoTechnology Labs developed to the leaf-bearing stage 351 days after sowing and incubation in darkness at 16–19 °C. Seedlings illuminated 451 days after sowing were eventually established on soil in a greenhouse (ex vitro. A total of 85 seedlings were promptly transported to Hawaii in March 2011. A minimum of 3.1 years is required for the propagation of P. holochila from seed using acidified asymbiotic medium P723.

  14. Biodiversity and distribution of Hypocrea/Trichoderma species in New Zealand

    Institute of Scientific and Technical Information of China (English)

    Sarah L Dodd; Alison Stewart

    2004-01-01

    @@ With increased imports of foreign microbes either as commercial biocontrol products or for the purposes of research, there is potentially an increased threat to indigenous beneficial microflora. In the present study, indigenous species of the fungal genus Hypocrea/Trichoderma are being used as a model system to determine the impact of foreign microbes on the native microflora of New Zealand. In order to protect such microflora, one has to first be aware of what is currently present and what sites, if any,are most vulnerable. A preliminary survey for the presence and diversity of species of Hypocrea/Trichoderma is currently underway in New Zealand and samples are being assessed from forest soils,agricultural soils, orchards, garden soils, sclerotia of various plant pathogens and pasture land. To date 238 isolates have been identified using both morphological characters and DNA sequence data from the ITS regions of the ribosomal gene cluster (ITS1 & ITS2) and, in some instances, sequence of the elongation factor gene (EF1-α) . Isolates were found to represent 16 known species plus three species as yet undescribed. In forest soils T. harzianum /T. inhamatum (31%) and T. viride (29%)followed by T. fertile (13%), were clearly the most abundant species and the remaining five species found in forests ( T. atroviride, T. koningii, T. aureoviride, H. cf. flavovirens anamorph and one unknown) each accounting for <8% of the total. Dominance by the species T. harzianum/inhamatum is consistent with studies done in South-East Asia, a mid-European primeval floodplainforest and Moscow. In contrast, when isolations were conducted with a bias for biocontrol capabilities it was found that the species T. atroviride (29%), T. koningii (17%), T. harzianum (15%)and T. viride (12%) dominated respectively. This survey is currently ongoing in New Zealand.Future studies will monitor indigenous species and strains following inoculation of specific microbes to assess the impact of the

  15. Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium.

    Science.gov (United States)

    Summerbell, R C; Gueidan, C; Schroers, H-J; de Hoog, G S; Starink, M; Rosete, Y Arocha; Guarro, J; Scott, J A

    2011-01-01

    Over 200 new sequences are generated for members of the genus Acremonium and related taxa including ribosomal small subunit sequences (SSU) for phylogenetic analysis and large subunit (LSU) sequences for phylogeny and DNA-based identification. Phylogenetic analysis reveals that within the Hypocreales, there are two major clusters containing multiple Acremonium species. One clade contains Acremonium sclerotigenum, the genus Emericellopsis, and the genus Geosmithia as prominent elements. The second clade contains the genera Gliomastixsensu stricto and Bionectria. In addition, there are numerous smaller clades plus two multi-species clades, one containing Acremonium strictum and the type species of the genus Sarocladium, and, as seen in the combined SSU/LSU analysis, one associated subclade containing Acremonium breve and related species plus Acremonium curvulum and related species. This sequence information allows the revision of three genera. Gliomastix is revived for five species, G. murorum, G. polychroma, G. tumulicola, G. roseogrisea, and G. masseei. Sarocladium is extended to include all members of the phylogenetically distinct A. strictum clade including the medically important A. kiliense and the protective maize endophyte A. zeae. Also included in Sarocladium are members of the phylogenetically delimited Acremonium bacillisporum clade, closely linked to the A. strictum clade. The genus Trichothecium is revised following the principles of unitary nomenclature based on the oldest valid anamorph or teleomorph name, and new combinations are made in Trichothecium for the tightly interrelated Acremonium crotocinigenum, Spicellum roseum, and teleomorph Leucosphaerinaindica. Outside the Hypocreales, numerous Acremonium-like species fall into the Plectosphaerellaceae, and A. atrogriseum falls into the Cephalothecaceae. PMID:21523192

  16. Gremmeniella abietina (lagerb morelet: Distribution in Yugoslavia, significance and control

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    Karadžić Dragan

    2002-01-01

    Full Text Available Fungus G. abietina is one of the most dangerous pathogenic fungi inhabiting conifer plantations, and especially endangered species are the pines. Among the pines, the most susceptible species is Austrian pine, and endangered plantations are aged between 8 and 25 years. This fungus was detected in Serbia and Montenegro only on the mountains (Kopaonik, Vlasina, Goè, Durmitor. The fungus was identified on Austrian pine, Scots pine and spruce. In its development G. abietina forms both stages (anamorph and teleomorph. Its imperfect form i.e. pycnidial stage, is far more significant for the infection process, and mainly all infection is carried by conidia (=pycnospores. Infection of trees is possible throughout the year, but the critical period of infection is May-June. Conidia are transmitted by raindrops, and the infection is spread through the buds and bark of young shoots. Incubation period lasts for 9 months, i.e. if infection occurs in June of the current year, the first visible symptoms of infection occur in March of the following year. The symptoms of infection are visible at the base of buds (cross section, on the needles (initial orange discolouration at the base of the needles, and then the whole needle turns brown and drops and on the bark of young shoots. Soon after infection symptoms, the fruiting bodies (i.e. pycnidia appear on the necrotic tissues of the host. Apothecia form on the bark two years after tree dying. In the severely infested plantations, all dead trees should be felled and removed, and the remaining trees should be treated with copper fungicides. As this is a quarantine disease, care must be taken to prevent the spread of the disease to the new uninfected regions. This measure is imposed by the legal regulations on quarantine diseases.

  17. Molecular Prediction of Pea Footrot Disease

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    Ebimieowei Etebu

    2011-11-01

    Full Text Available PCR based assays were developed in this study to quantitatively predict pea footrot infections in agricultural soils prior to cultivation. Pea footrot disease due to Nectria haematococca (anamorph Fusarium solani f.sp. pisi is linked to the presence of six pea pathogenicity (PEP genes (PDA1, PEP1, PEP2, PEP3, PEP4 and PEP5. Whilst molecular assays have been used recently to selectively detect these genes in soil- DNA, quantitative molecular assay has been extended to only the PEP3 gene whose role in pea pathogenicity is yet unknown. In this research, PCR-based quantification assays were developed to quantify the two pea pathogenicity genes (PDA and PEP5 with identified roles in pea pathogenicity from soil-DNA obtained from fields with pea footrot histories. Results showed that the quantitative molecular assays developed herein were both efficient. Amplification efficiency of the Q-PCR assay for the PDA and PEP5 gene were 97 and 89%, respectively. PDA and PEP5 gene copy numbers were shown to vary significantly (p = 0.01 between fields. However, the PDA gene copy numbers were relatively higher than those of the PEP5 gene in agricultural fields. The genes, especially PEP5 gene, were comparable to and positively correlated to the number of spores of pathogenic N. haematococca, and footrot disease. The PDA gene alone in soil could not cause footrot disease in peas after 8 weeks of planting; assays directed at it alone may therefore be insufficient to predict pea footrot disease. However, the molecular assay targeting the PDA alongside the PEP5 gene offers the opportunity for quantitative prediction of pea footrot infections in agricultural soils prior to cultivation.

  18. 佛肚竹枯萎病的研究%A STUDY ON THE WILT DISEASE OF BAMBUSA VENTRICOSA

    Institute of Scientific and Technical Information of China (English)

    宋漳; 林毓银

    2001-01-01

    The wilt disease of Bambusa ventricosa was a serious disease occured in Nanping city, Fujian Province. Thesymptoms of the disease, identification, inoculation, biological characteristics of the causal organism and bionomics of thewilt disease were studied. The species was identified as Nectria ditissirna Tul. at sexual phase, and as Fusarium semitec tum Berk. &Rav. at anamorphic state. The causal organism of wilt disease grew vigorously on the PSA and PSA + 10%decoction of culm media, and formed white coloured colonies. After incubation of 7 days at 28℃ , a great amount of macro-conidia was produced, no stroma and perithecia were formed after 30 days. The stroma and ascospore were only producedunder natural condition. The preference temperature for mycelia growth was between 25 ~ 28 ℃ , and the optimum pH val-ues was at 6 ~ 7. The optimum temperature for conidia and ascospores germination was between 25 ~ 28℃, and the opti-mum pH values was at 6 ~ 7. The high relative humidity ( RH 96.1% ~ 100% ) was necessary for the germination ofconidia and ascospores. The results of experiments showed that the pathogen of the wilt disease overwintered on the soil,and disseminated by winds and rains to infect the wounded stem base of Bambusa ventricosa. The primary infection occurredfrom the last ten days of February or the first days of March. The peak infection occurred from the first ten days of Marchto the second ten days of April during early summer rains. The infection ceased from the second ten days or the last tendays of May. The freeze injury was possibly important factor to induce infection of the wilt disease.

  19. The information highways of a biotechnological workhorse – signal transduction in Hypocrea jecorina

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    Schmoll Monika

    2008-09-01

    Full Text Available Abstract Background The ascomycete Hypocrea jecorina (anamorph Trichoderma reesei is one of the most prolific producers of biomass-degrading enzymes and frequently termed an industrial workhorse. To compete for nutrients in its habitat despite its shortcoming in certain degradative enzymes, efficient perception and interpretation of environmental signals is indispensable. A better understanding of these signals as well as their transmission machinery can provide sources for improvement of biotechnological processes. Results The genome of H. jecorina was analysed for the presence and composition of common signal transduction pathways including heterotrimeric G-protein cascades, cAMP signaling, mitogen activated protein kinases, two component phosphorelay systems, proteins involved in circadian rhythmicity and light response, calcium signaling and the superfamily of Ras small GTPases. The results of this survey are discussed in the context of current knowledge in order to assess putative functions as well as potential impact of alterations of the respective pathways. Conclusion Important findings include an additional, bacterial type phospholipase C protein and an additional 6-4 photolyase. Moreover the presence of 4 RGS-(Regulator of G-protein Signaling proteins and 3 GprK-type G-protein coupled receptors comprising an RGS-domain suggest a more complex posttranslational regulation of G-protein signaling than in other ascomycetes. Also the finding, that H. jecorina, unlike yeast possesses class I phosducins which are involved in phototransduction in mammals warrants further investigation. An alteration in the regulation of circadian rhythmicity may be deduced from the extension of both the class I and II of casein kinases, homologues of which are implicated in phosphorylation of FRQ in Neurospora crassa. On the other hand, a shortage in the number of the pathogenicity related PTH11-type G-protein coupled receptors (GPCRs as well as a lack of

  20. Xylan oligosaccharides and cellobiohydrolase I (TrCel7A interaction and effect on activity

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    Baumann Martin J

    2011-10-01

    Full Text Available Abstract Background The well-studied cellulase mixture secreted by Trichoderma reesei (anamorph to Hypocrea jecorina contains two cellobiohydolases (CBHs, cellobiohydrolase I (TrCel7A and cellobiohydrolase II (TrCeI6A, that are core enzymes for the solubilisation of cellulose. This has attracted significant research interest because of the role of the CBHs in the conversion of biomass to fermentable sugars. However, the CHBs are notoriously slow and susceptible to inhibition, which presents a challenge for the commercial utilisation of biomass. The xylans and xylan fragments that are also present in the biomass have been suggested repeatedly as one cause of the reduced activity of CHBs. Yet, the extent and mechanisms of this inhibition remain poorly elucidated. Therefore, we studied xylan oligosaccharides (XOSs of variable lengths with respect to their binding and inhibition of both TrCel7A and an enzyme variant without the cellulose-binding domain (CBM. Results We studied the binding of XOSs to TrCel7A by isothermal titration calorimetry. We found that XOSs bind to TrCel7A and that the affinity increases commensurate with XOS length. The CBM, on the other hand, did not affect the affinity significantly, which suggests that XOSs may bind to the active site. Activity assays of TrCel7A clearly demonstrated the negative effect of the presence of XOSs on the turnover number. Conclusions On the basis of these binding data and a comparison of XOS inhibition of the activity of the two enzyme variants towards, respectively, soluble and insoluble substrates, we propose a competitive mechanism for XOS inhibition of TrCel7A with phosphoric swollen cellulose as a substrate.

  1. The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation

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    Seiboth Bernhard

    2011-05-01

    Full Text Available Abstract Background The identification and characterization of the transcriptional regulatory networks governing the physiology and adaptation of microbial cells is a key step in understanding their behaviour. One such wide-domain regulatory circuit, essential to all cells, is carbon catabolite repression (CCR: it allows the cell to prefer some carbon sources, whose assimilation is of high nutritional value, over less profitable ones. In lower multicellular fungi, the C2H2 zinc finger CreA/CRE1 protein has been shown to act as the transcriptional repressor in this process. However, the complete list of its gene targets is not known. Results Here, we deciphered the CRE1 regulatory range in the model cellulose and hemicellulose-degrading fungus Trichoderma reesei (anamorph of Hypocrea jecorina by profiling transcription in a wild-type and a delta-cre1 mutant strain on glucose at constant growth rates known to repress and de-repress CCR-affected genes. Analysis of genome-wide microarrays reveals 2.8% of transcripts whose expression was regulated in at least one of the four experimental conditions: 47.3% of which were repressed by CRE1, whereas 29.0% were actually induced by CRE1, and 17.2% only affected by the growth rate but CRE1 independent. Among CRE1 repressed transcripts, genes encoding unknown proteins and transport proteins were overrepresented. In addition, we found CRE1-repression of nitrogenous substances uptake, components of chromatin remodeling and the transcriptional mediator complex, as well as developmental processes. Conclusions Our study provides the first global insight into the molecular physiological response of a multicellular fungus to carbon catabolite regulation and identifies several not yet known targets in a growth-controlled environment.

  2. From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach

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    Mechtler Karl

    2010-11-01

    Full Text Available Abstract Background Hypocrea jecorina (anamorph Trichoderma reesei is a filamentous ascomycete of industrial importance due to its hydrolases (e.g., xylanases and cellulases. The regulation of gene expression can influence the composition of the hydrolase cocktail, and thus, transcription factors are a major target of current research. Here, we design an approach for identifying a repressor of a xylanase-encoding gene. Results We used streptavidin affinity chromatography to isolate the Xylanase promoter-binding protein 1 (Xpp1. The optimal conditions and templates for the chromatography step were chosen according to the results of an electrophoretic mobility shift assay performed under repressing conditions, which yielded a DNA-protein complex specific to the AGAA-box (the previously identified, tetranucleotide cis-acting element. After isolating AGAA-box binding proteins, the eluted proteins were identified with Nano-HPLC/tandem MS-coupled detection. We compared the identified peptides to sequences in the H. jecorina genome and predicted in silico the function and DNA-binding ability of the identified proteins. With the results from these analyses, we eliminated all but three candidate proteins. We verified the transcription of these candidates and tested their ability to specifically bind the AGAA-box. In the end, only one candidate protein remained. We generated this protein with in vitro translation and used an EMSA to demonstrate the existence of an AGAA-box-specific protein-DNA complex. We found that the expression of this gene is elevated under repressing conditions relative to de-repressing or inducing conditions. Conclusions We identified a putative transcription factor that is potentially involved in repressing xylanase 2 expression. We also identified two additional potential regulatory proteins that bind to the xyn2 promoter. Thus, we succeeded in identifying novel, putative transcription factors for the regulation of xylanase

  3. Scientific Opinion on the risk to plant health posed by Dothistroma septosporum (Dorog. M. Morelet (Mycosphaerella pini E. Rostrup, syn. Scirrhia pini and Dothistroma pini Hulbary to the EU territory with the identification and evaluation of risk reduction options

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    EFSA Panel on Plant Health (PLH

    2013-01-01

    Full Text Available The Panel on Plant Health conducted a pest risk assessment for Scirrhia pini for the European Union (EU territory, identified risk management options and evaluated their effectiveness. The risk assessment was conducted taking into account current EU legislation. The Panel also provided an opinion on the effectiveness of the present EU requirements against this organism listed in Council Directive 2000/29/EC. Considering that there has been taxonomic confusion over the pest mentioned in the EU plant health legislation, the assessment was carried out for Dothistroma septosporum (the anamorph of S. pini, the latter renamed to Mycosphaerella pini and Dothistroma pini (teleomorph unknown, both of which cause Dothistroma needle blight. Three major pathways for entry were identified: host plants intended for planting/grafting (excluding fruit and seeds, natural means (wind, rain, wind-driven rain, etc., and host plants and plant parts with foliage not intended for planting (e.g., fresh branches, cut Christmas trees, etc.; probability of entry was considered very likely, likely and unlikely, respectively, with high uncertainty. The establishment and further spread were both considered very likely. The current consequences were considered major and they include loss of wood volume, tree mortality, and losses in terms of landscape value, amenity value, recreational uses and tourism. The Panel concluded that introduction and spread of the two pests are not fully prevented by Council Directive 2000/29/EC, mainly because of the possibility to import and trade host plant material other than Pinus plants for planting. In order to prevent the potentially serious impacts in those parts of the risk assessment area where the pathogens are currently not known to occur, additional risk reduction options have been identified, in the form of simultaneous implementation of measures targeted at reducing the movement of infected host plants and the further spread of the

  4. Genetic analyses place most Spanish isolates of Beauveria bassiana in a molecular group with word-wide distribution

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    Quesada-Moraga Enrique

    2011-04-01

    Full Text Available Abstract Background The entomopathogenic anamorphic fungus Beauveria bassiana is currently used as a biocontrol agent (BCA of insects. Fifty-seven Beauveria bassiana isolates -53 from Spain- were characterized, integrating group I intron insertion patterns at the 3'-end of the nuclear large subunit ribosomal gene (LSU rDNA and elongation factor 1-alpha (EF1-α phylogenetic information, in order to assess the genetic structure and diversity of this Spanish collection of B. bassiana. Results Group I intron genotype analysis was based on the four highly conserved insertion sites of the LSU (Ec2653, Ec2449, Ec2066, Ec1921. Of the 16 possible combinations/genotypes, only four were detected, two of which were predominant, containing 44 and 9 members out of 57 isolates, respectively. Interestingly, the members of the latter two genotypes showed unique differences in their growth temperatures. In follow, EF1-α phylogeny served to classify most of the strains in the B. bassiana s.s. (sensu stricto group and separate them into 5 molecular subgroups, all of which contained a group I intron belonging to the IC1 subtype at the Ec1921 position. A number of parameters such as thermal growth or origin (host, geographic location and climatic conditions were also examined but in general no association could be found. Conclusion Most Spanish B. bassiana isolates (77.2% are grouped into a major phylogenetic subgroup with word-wide distribution. However, high phylogenetic diversity was also detected among Spanish isolates from close geographic zones with low climatic variation. In general, no correlation was observed between the molecular distribution and geographic origin or climatic characteristics where the Spanish B. bassiana isolates were sampled.

  5. 桉树焦枯病菌(Calonectria pseudoreteaudii)生物学特性测定%Biological characteristics of Calonectria pseudoreteaudii associated with Cylindrocladium leaf blight

    Institute of Scientific and Technical Information of China (English)

    陈全助; 陈慧洁; 郭文硕; 叶小真; 沈金清

    2014-01-01

    丽赤壳属多数种是桉树焦枯病( Cylindrocladium leaf blight)重要致病菌,掌握病原菌生物学特性有助于从病原角度了解病害发生发展,科学指导防治。对桉树焦枯病致病菌株Calonectria pseudoreteaudii生物学特性进行测定。结果表明:该菌株菌丝生长以燕麦片琼脂培养基生长最快,最适温度为24-26℃,最适pH值为7.0,而光照条件不影响菌丝生长;菌株产孢最适温度为25℃,最适pH值为6.0,以光照、PDA培养基产孢量较高;分生孢子萌发与相对湿度成正相关,最适温度为28℃,最适pH值为6.0,黑暗有助于孢子萌发。%Absrt act:Calonectria spp., particularly in their Cylindrocladium anamorph form, are well-known pathogens associated with Cylin-drocladium leaf blight.For the purpose of understanding the biological characteristics of Ca.pseudoreteaudii YA5j2 and guiding how to control this disease, biological characteristics of this isolate were determined.The optimal conditions for mycelium growth were oatmeal agar medium with pH 7.0 cultivated at 24-26℃, and illuminance had no significant effect on hyphae growth.The suitable conditions for spore production were potato dextrose agar medium with pH 6.0 cultivated at 25℃in the light.Conidium germination had a positive correlation with relative humidity, and conidium under the circumstance with high humidity, pH 6.0, temperature at 28 ℃, and without illumination contributed to germination.

  6. Thermal-structure coupled deformation in an optical-mechanical system for radiometric calibration of satellite IR remote sensor%卫星红外遥感器辐射定标光机系统热-结构耦合变形分析

    Institute of Scientific and Technical Information of China (English)

    肖庆生; 杨林华; 赵寿根

    2011-01-01

    The thermal deformation of a radiometric calibration optical-structure system under simulated space environments would cause a great damage to the imaging quality of the system, and reduce the precision of the calibration test eventually.In this paper, a finite element model of such a system is built.Based on the model, with the temperature values at nodes obtained in the radiometric calibration test for the satellite multi-spectral scanner, the distribution of the thermal-structure coupling deformation is calculated and analyzed.The results show that the thermal distortion of the optical bracket would cause rigid displacements of the primary mirror and the primary reflector,making them off the axis or acclivitous and the black body off the focus, and changing the focal distance of the system in a non-uniform steady-state Iow temperature condition.But the root-mean-square (RMS) values of deformation of the anamorphic mirrors are both less than one fortieth of the wave length, within the actual surface shape accuracy requirements of the optical system.%辐射定标光机系统在模拟空间环境下的热变形直接影响定标光学系统成像质量,并决定星载遥感器辐射定标试验精度.文章建立的辐射定标光机系统有限元模型,以某卫星多光谱扫描仪辐射定标试验中的实测温度变化作为温度载荷,计算和研究了该系统在真空低温环境下的热-结构耦合变形的分布情况和分布规律.结果表明:在非均匀稳态低温环境下,该系统光学支架热变形使主镜及主反射镜发生刚性位移,引起垂轴方向位移、倾斜,黑体的离焦和光学系统焦距变化;反射镜表面畸变RMS值均为1/40波长以下,可以满足实际光学系统的面形准确度要求.

  7. The diversity of aquatic Hyphomycetes in South America A diversidade dos Hyphomycetes aquáticos nas águas continentais da América do Sul

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    Iracema Helena Schoenlein-Crusius

    2003-07-01

    Full Text Available Aquatic Hyphomycetes, also named Ingoldian or freshwater fungi, constitute a group of anamorphic fungi that are typically aquatic, producing tetraradiate, sigmoid or spherical conidia on submerged plant debris (leaf litter, petioles, bark, etc.. Mainly occurring in lotic systems, these fungi are considered to be one of the most active groups of organisms in the decomposition of leaf litter, and play a crucial role in the trophic chain. In South America, aquatic Hyphomycetes are mentioned for Argentina, Brazil, Chile, Ecuador, Peru and Venezuela, totalizing the report of about 90 species. Almost all studies are taxonomical, some with proper drawings and complete descriptions, but no keys have been provided yet, nor there is a specific culture collection for preserved strains. The published papers are still sporadic and dispersed, emphasizing a great need to improve the knowledge of the diversity of South American aquatic Hyphomycetes. The present review contents the check list of reported species until now, and has the aim to encourage the research concerned with aquatic Hyphomycetes in non explored regions of the continent.Os Hyphomycetes aquáticos, também denominados fungos "Ingoldeanos", constituem grupo de fungos anamórficos tipicamente aquáticos, que produzem conídios tetrarradiados, sigmóides ou esféricos sobre substratos vegetais submersos (folhedo, pecíolos, cortiça, etc.. Ocorrendo principalmente em sistemas lóticos, estes fungos são considerados como um dos grupos de organismos mais ativos na decomposição de folhedo, assumindo papel crucial na cadeia trófica. Na América do Sul os Hyphomycetes aquáticos são mencionados para a Argentina, Brasil, Chile, Equador, Peru e Venezuela, totalizando a citação de aproximadamente 90 espécies. Quase todos os estudos são taxonômicos, com ilustrações adequadas e descrições completas, porém ainda não foram elaboradas chaves sistemáticas ou coleções de culturas de linhagens

  8. Coregulated expression of loline alkaloid-biosynthesis genes in Neotyphodium uncinatum cultures.

    Science.gov (United States)

    Zhang, Dong-Xiu; Stromberg, Arnold J; Spiering, Martin J; Schardl, Christopher L

    2009-08-01

    Epichloë endophytes (holomorphic Epichloë spp. and anamorphic Neotyphodium spp.) are systemic, often heritable symbionts of cool-season grasses (subfamily Pooideae). Many epichloae provide protection to their hosts by producing anti-insect compounds. Among these are the loline alkaloids (LA), which are toxic and deterrent to a broad range of herbivorous insects but not to mammalian herbivores. LOL, a gene cluster containing nine genes, is associated with LA biosynthesis. We investigated coordinate regulation between LOL-gene expression and LA production in minimal medium (MM) cultures of Neotyphodium uncinatum. Expression of all LOL genes significantly fit temporal quadratic patterns during LA production. LOL-gene expression started before LA were detectable, and increased while LA accumulated. The highest gene expression level was reached at close to the time of most rapid LA accumulation, and gene expression declined to a very low level as amounts of LA plateaued. Temporal expression profiles of the nine LOL genes were tightly correlated with each other, but not as tightly correlated with proC and metE (genes for biosynthesis of precursor amino acids). Furthermore, the start days and peak days of expression significantly correlated with the order of the LOL-cluster genes in the genome. Hierarchical cluster analysis indicated three pairs of genes-lolA and lolC, lolO and lolD, and lolT and lolE-expression of which was especially tightly correlated. Of these, lolA and lolC tended to be expressed early, and lolT and lolE tended to be expressed late, in keeping with the putative roles of the respective gene products in the LA-biosynthesis pathway. Several common transcriptional binding sites were discovered in the LOL upstream regions. However, low expression of P(lolC2)uidA and P(lolA2)uidA in N. uncinatum transformants suggested induced expression of LOL genes might be subject to position effect at the LOL locus. PMID:19366635

  9. Corallomycetella属及以C.jatrophae为模式建立新属Corallonectria(丛赤壳科,肉座菌目)%Revision of the genus Corallomycetella with Corallonectria gen.nov.for C.jatrophae (Nectriaceae, Hypocreales)

    Institute of Scientific and Technical Information of China (English)

    C.S.HERRERA; A.Y.ROSSMAN; G.J.SAMUELS; Christian LECHAT; P.CHAVERRI

    2013-01-01

    The genus Corallomycetella (Ascomycota,Sordariomycetes,Hypocreales,Nectriaceae) has been defined to include red nectrioid fungi associated with rhizomorphs in nature and culture.With the recent collection of an unusual specimen having striated ascospores,the genus was re-examined using this and previously obtained cultures.A multilocus tree was constructed based on three loci (ITS,mcm7,β-tubulin) to determine phylogenetic relationships.Our results indicate that Corallomycetella repens sensu lato forms two clades associated with biogeography.Corallomycetella repens sensu stricto is restricted to specimens from Asia while C.elegans is resurrected for specimens from Africa and America.Minute striations in the ascospores are an overlooked character in species of Corallomycetella.Corallomycetellajatrophae is related to Neonectria sensu lato and unrelated to C.repens and C.elegans; thus,a new genus,Corallonectria,is described to accommodate this species.Corallonectria is characterized by furfuraceous perithecia and synnematous fusarium-like anamorph.%对Corallomycetella属的概念进行了阐述,该属包括子实体为红色、在自然和培养条件下产生菌索的丛赤壳类真菌.根据对近期采集的标本的观察和多基因系统树分析的结果,广义的Corallomycetella repens形成2个分支,它们与生物地理因素相关联.狭义的Corallomycetella repens限于来自亚洲的标本,而C.elegans来自非洲和美洲.Corallomycetella属成熟的子囊孢子表面具有纤细条纹,此特征过去曾被忽略,C.jatrophae与广义的Neonectria属关系接近,而与C.repens和C.elegans关系较远;因而建立新属Corallonectria,其子囊壳表面细粉状,无性型为束丝结构并与镰孢菌相似.

  10. Primer reporte de susceptibilidad del clon de caucho natural FX-3864 a Microcyclus ulei en la altillanura colombiana

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    Ibonne Aidee García

    2012-05-01

    Full Text Available First report of susceptibility of natural rubber clone FX-3864 a Microcyclus ulei en la altillanuera colombiana ResumenEl mal suramericano de las hojas (SALB, enfermedad endémica del caucho (Hevea brasiliensis, es causado por Microcyclus ulei (forma imperfecta Fusicladium macrosporum y constituye el principal limitante del cultivo en América, área donde el microorganismo patógeno es endémico. En forma semejante al de otros cultivos agrícolas, el manejo de esta enfermedad está condicionado a la disponibilidad de resistencia genética en el hospedero. En razón de su productividad y condición de resistencia genética, el clon FX 3864 ha sido ampliamente plantado en zonas con diferente potencialidad epidémica a la incidencia del SALB en Colombia, particularmente las denominadas de “no escape” a la enfermedad. Durante el 2010, plantaciones con el clon FX 3864 en fase productiva presentaron síntomas de SALB en zonas de escape ubicadas en la altillanura colombiana (departamento del Meta. En parcelas trampa ubicadas en áreas aledañas a los cultivos se estableció que la severidad promedio de la enfermedad alcanzó niveles de 5,78% en este clon. Verificada la causalidad de la enfermedad mediante observaciones al microscopio se procedió a confirmar el origen del material sobre el cual se desarrollaban las lesiones, utilizando marcadores moleculares (4 microsatélites específicos. Los resultados de la prueba permitieron confirmar la susceptibilidad del hasta hace poco resistente clon FX 3864 al SALB en Colombia. Se sugiere tomar en consideración la nueva condición de este clon y, en concordancia, reorientar los programas de fomento del cultivo advirtiendo a los agricultores sobre los riesgos potenciales de ocurrencia de la enfermedad en las nuevas áreas programadas. Palabras clave: SALB, Hevea brasiliensis, Fusicladium macrosporum, cultivo de caucho. AbstractSouth American Leaf Blight (SALB, caused by Microcyclus ulei (anamorph

  11. Isolation of filamentous fungi from public telephones of the Metropolitan region of the city of Recife, PE, Brazil Isolamento de fungos filamentosos em telefones públicos da região Metropolitana da cidade do Recife, PE, Brasil

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    Flavia Paiva Coutinho

    2007-06-01

    Full Text Available Fungi can inhabit our organism without causing any harm, but they show themselves when the immunological system is compromised. In this study, a survey of the occurrence of filamentous fungi was carried out in public telephones of the Metropolitan Region of the City of Recife, PE, Brazil. This showed the public phones as a possible mean of transmission of fungal diseases among humans. Samples from the environment, audios, speakers and keyboards were taken at the airport, mall, subway and bus station in the months of October/2003 (dry season and June/2004 (rainy season, totaling 120 samples. The procedure of identification of species was carried out through conventional taxonomy. Thirty-four genera were isolated, totaling 73 species, the majority belonging to the anamorphic fungi (91.78%, followed by the Ascomycota (6.85% and the Zygomycota (1.37%. There was no significant difference in the proportion of species between the dry and rainy seasons, with 46 and 53 species identified, respectively. Due to the lack of maintenance, or inadequate cleaning of public telephones, the fungi present in these appliances may cause mycosis in the users as these telephones are used by people from different social classes and variable habits, both healthy and immunocompromised.Os fungos podem circular pelo nosso organismo sem causar qualquer mal, mas manifestam-se quando o sistema imunológico está comprometido. Neste estudo foi realizada uma análise da ocorrência de fungos filamentosos em telefones públicos da Região Metropolitana da Cidade do Recife, PE, Brasil. Apresentando-os como possível meio de transmissão de doenças de natureza fúngica entre os indivíduos. Amostras dos ambientes, áudios, bocais e teclas foram obtidas no aeroporto, shopping, metrô e rodoviária nos meses de outubro/2003 (período seco e junho/2004 (período chuvoso, totalizando 120 amostras. O procedimento de identificação das espécies ocorreu através da taxonomia

  12. Disease symptoms and their frequency of occurrence in sycamores (Acer pseudoplatanus L. in the Rymanów Forest Unit stands

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    Tadeusz Kowalski

    2012-12-01

    local unhealed cankers and widespread bark cankers, sometimes taking the form of a sector reaching the part near the pith, and greyish - green or greenish - brown wood discolorations in the form of numerous stains, especially in the trunk periphery part. On the trunks of 184 (14.2% sycamores, perithecia of Nectria coccinea were present. They formed in the area of cankers on bark and exposed wood alike. Fruiting bodies of Nectria cinnabarina, Eutypa acharii, Melanomma pulvis-pyrius, conidiomata of Cytospora ambiens, Aposphaeria cf. pulviscula and conidiomata of Stegonsporium pyriforme occurred sporadically. From wood, the following were isolated predominantly: Basidiomycetes sp. 1, Chalara sp. 1, Cadophora fastigiata, Nectria cinnabarina and Cytospora ambiens. Chalara sp.1, with its morphological features, best matched the anamorph of Ceratocystis coerulescens sensu lato.

  13. A baseline analysis of the distribution, host-range, and severity of the rust Puccinia Psidii in the Hawaiian islands, 2005-2010

    Science.gov (United States)

    Anderson, Robert C.

    2012-01-01

    westward. Although possibly present earlier, P. psidii was found in California in November 2005 in a nursery in San Diego County on Myrtus communis and documented by a report in a nursery newsletter (Mellano 2006). Puccinia psidii was first found in Hawai`i on a young plant of `ōhi`a (Metrosideros polymorpha) in April 2005, in a nursery on the island of O`ahu (Killgore and Heu 2005; Uchida et al. 2006). The fungus subsequently spread to most islands of the Hawaiian chain, infecting `ōhi`a and other myrtaceous hosts (Hauff 2006, Anderson et al. 2007). P. psidii was first found in Japan in May 2007 on cultivated `ōhi`a (Kawanishi et al. 2009). Most recently, a rust identified as Uredo rangelii was discovered in April 2010 in New South Wales, Australia (Carnegie et al. 2010). This rust is closely related to Puccinia psidii and is part of the guava rust complex described by Simpson et al. (2006). Although treated as a separate species by Simpson et al. (2006), many authors now consider U. rangelii a synonym for U. psidii, which is the anamorph (asexual stage) of P. psidii, and therefore, the same species (Glen et al. 2007, Carnegie et al. 2010). Because of the large diversity of native Myrtaceae present in Australia, the number of Myrtaceae hosts attacked by species of the guava rust complex will likely grow now that U. rangelii has arrived and is spreading in the country. As of this writing (June 2011), 94 species of Myrtaceae have been identified as hosts of U. rangelii in the states of New South Wales and Queensland. Damage is severe on nearly one-third of the species affected, and 16 of these species are threatened or endangered native species (Secretary of Australia, May 2011). The presence of Puccinia psidii in Hawai`i is particularly alarming for at least two reasons: (1) M. polymorpha is the dominant overstory tree of the native forest, and (2) P. psidii is now established in the Pacific region, where numerous Myrtaceae species are native. Native ecosystems in Hawai

  14. Study on the hemodynamic changes in benign and malignant breast tumors by ultrasound contrast quantitative analysis%超声造影定量分析对乳腺良恶性肿瘤血流灌注异质性的评价

    Institute of Scientific and Technical Information of China (English)

    李颖嘉; 文戈; 何洁

    2009-01-01

    Objective To compare the differences in histological morphology and hemodynamics between benign and malignant tumor, as well as differences between the different perfusional regions in tumors of the same type. Methods Thirty cases with malignant breast carcinoma and 30 cases with fibroadenoma were inspected by contrast enhanced ultrasound with time-intensity quantitive analysis. Perfusion index like peak intensity(PI), area under the curve(AUC), time to peak(TTP) and wash-out time (WOT) were collected both inside and at the margin of focus. The ultrastructures of new microvessesl were observed routinely with microscopy and transmission electron microscopy. Results The curve of malignant tumor group was characterized as ascend rapidly and drop slowly while the benign group presented as ascend slowly and drop rapidly. The AUC and WOT of malignant tumor group were significantly higher than that of benign group,while the PI and TTP had no statistical difference. In malignant tumor group,PI, AUC and WOT of the margin of focus were significantly higher than that of inside region of focus,while TTP was the opposite. However,there was no statistical differences between the perfusion parameter inside and outside of focus in benign group. The ultrastructures of newly built blood vessels in malignant group had strong ability to split,which was different from normal endothelium cells but was similar to other tumor foci. The margin of foci were characterized with dilatating and distorting vessels,and the center of the foci were occupied by narrow,occlusive new vessels and contracted anamorphic endothelium cells and pericytes. Rich microvessel areas located in the margin of foci. Conclusions The perfusion pattern,modality of time-intensity curve, mean perfusion parameter and variance of regional perfusion parameters are valuable diagnostic basis in discriminating benign and malignant breast tumor. The density,modality,distribution,structure and function of new microvessels in

  15. Insect pathogens as biological control agents: Back to the future.

    Science.gov (United States)

    Lacey, L A; Grzywacz, D; Shapiro-Ilan, D I; Frutos, R; Brownbridge, M; Goettel, M S

    2015-11-01

    combine the advantages of chemical pesticides and MCAs: they are fast acting, easy to produce at a relatively low cost, easy to formulate, have a long shelf life and allow delivery using conventional application equipment and systemics (i.e. in transgenic plants). Unlike broad spectrum chemical pesticides, B. thuringiensis toxins are selective and negative environmental impact is very limited. Of the several commercially produced MCAs, B. thuringiensis (Bt) has more than 50% of market share. Extensive research, particularly on the molecular mode of action of Bt toxins, has been conducted over the past two decades. The Bt genes used in insect-resistant transgenic crops belong to the Cry and vegetative insecticidal protein families of toxins. Bt has been highly efficacious in pest management of corn and cotton, drastically reducing the amount of broad spectrum chemical insecticides used while being safe for consumers and non-target organisms. Despite successes, the adoption of Bt crops has not been without controversy. Although there is a lack of scientific evidence regarding their detrimental effects, this controversy has created the widespread perception in some quarters that Bt crops are dangerous for the environment. In addition to discovery of more efficacious isolates and toxins, an increase in the use of Bt products and transgenes will rely on innovations in formulation, better delivery systems and ultimately, wider public acceptance of transgenic plants expressing insect-specific Bt toxins. Fungi are ubiquitous natural entomopathogens that often cause epizootics in host insects and possess many desirable traits that favor their development as MCAs. Presently, commercialized microbial pesticides based on entomopathogenic fungi largely occupy niche markets. A variety of molecular tools and technologies have recently allowed reclassification of numerous species based on phylogeny, as well as matching anamorphs (asexual forms) and teleomorphs (sexual forms) of several

  16. 虫草属EST-SSR标记系统的建立研究%Study of EST-SSR marker system of Cordyceps

    Institute of Scientific and Technical Information of China (English)

    管俊娇; 虞泓; 解云峰; 左世梅; 马荣锋; 曾文波

    2011-01-01

    Objective: To establish the EST-SSR marker system for Cordyceps by using ESTs of C. Bassiana and C. mUitaris. Method; The ESTs of Cordyceps were downloaded from the public database of NCBI, and the redundant ESTs with low quality were removed. The EST-SSR primers were designed by Sequece Seiner 1.2. And the primers were screened through PAGE-Electrophoresis. Result; The 4 556 non-redundant ESTs which from C. Bassiana with total length of 2 953 173 bp were selected. 718 EST-SSRs distributed in 616 ESTs were totally screened out, accounting for 15. 8%of the non-redundant ESTs. It was discovered that the average distance of EST-SSSR was 1/4 0% bp in EST-SSRs distribution of C. Bassiana. Trinucleotide repeats were the most abundant types with 419 repeated sequences. Regarding to C. Militaris, totally 1 363 non-redundant ESTs were acquired, from which 1 117 EST-SSRs were screened, and rate of SSR sites in ESTs was 81. 95%. The leading motif of SSR was nucleotide A. The 50 pairs of EST-SSR primers were designed according to the ESTs of C. Bassiana,and preliminary test showed the 34 pairs of primers amplified clear fragments,accounting for 68% of all primers. Furthermore, the 39 of the 40 pairs of primers from the ESTs of C. Militaris were found to be amplified as the clear fragments, accounting for 97. 5%. The phylogenetic analysis revealed that different anamorph of Cordyceps spieces were divided into four branches. Conclusion: The EST-SSR of Cordyceps had comparably higher utility value. The EST-SSR markers developed from ESTs of C. Bassiana and C. Militaris had well transferability in Cordyceps. And it was suggested that the EST-SSR markers should be an easy and effective way to assay molecular genetic structure of Cordyceps.%目的:通过球孢虫草、蛹虫草EST设计EST-SSR引物,建立虫草属EST-SSR标记系统.方法:从NCBI公共数据库下载获得虫草EST,利用Sequece Seiners 1.2软件去除冗余序列并设计引物,进行PAGE电泳.结果:通过去

  17. Fungai diversity in rhizosphere soil of medicinal plants in Heilongjiang Province%黑龙江省药用植物根际土壤真菌多样性

    Institute of Scientific and Technical Information of China (English)

    慕东艳; 吕国忠; 孙晓东; 王娜; 赵志慧

    2013-01-01

    Heilongjiang Province is one of the major medicinal plant-growing areas in China. In order to understand the population structure and distribution characteristics of fungal species in rhizosphere soil of cultivated medicinal plants, the authors investigated and collected 220 rhizosphere soil samples in the fields of 14 medicinal plants grown in Yichun, Tieli, Suihua, Harbin, Mudanjiang and Jiamusi regions of Heilongjiang Province during July to October, 2010. The mainly investigated medicinal plants included Acanthopanax senticosus, Anemarrhena asphodeloides, Arctium lappa, Belamcanda chinensis, Bupleurum chinense, Carthamus tinctorius, Codonopsis pilosula, Dioscorea nipponica, Fritillaria ussuriensis, Leonurusa artemisia, Platycodon grandiflorus, Saposhnikovia divaricata, Schisandra chinensis, and Scutellaria baicalensis. In this paper, we took the traditional morphological methods to identify fungal species. This study is aimed at the following three aspects: to investigate the detailed species and distribution pattern of sporulating fungi in rhizosphere soil of cultivated medicinal plants in six regions of Heilongjiang Province, to analyze the fungal diversity in rhizosphere soil of different medicinal plants, to collect potentially economic fungal resources, and to understand ecological characteristics of rhizosphere soil fungi of medicinal plants in the studied areas. After fungal isolation by means of soil dilution plate and soil particle plate and culture on standard media, totally 1016 fungal isolates were obtained. Based on colony and spore production, 86 fungal species belonging to 35 genera were morphologically identified, including ten species in seven genera of Zygomycetes (7. 78% ) , two species in one genus of Ascomycetes (0. 69% ) , and 74 species in 27 genera of anamorphic fungi (70. 76% ) , the left 20. 77% of all isolates were sterile on media. The results indicated that plentiful fungal diversity was present in the cultivated medicinal plant