WorldWideScience

Sample records for amazonian populations spatial

  1. Hair mercury levels in Amazonian populations: spatial distribution and trends

    Directory of Open Access Journals (Sweden)

    Barbieri Flavia L

    2009-12-01

    Full Text Available Abstract Background Mercury is present in the Amazonian aquatic environments from both natural and anthropogenic sources. As a consequence, many riverside populations are exposed to methylmercury, a highly toxic organic form of mercury, because of their intense fish consumption. Many studies have analysed this exposure from different approaches since the early nineties. This review aims to systematize the information in spatial distribution, comparing hair mercury levels by studied population and Amazonian river basin, looking for exposure trends. Methods The reviewed papers were selected from scientific databases and online libraries. We included studies with a direct measure of hair mercury concentrations in a sample size larger than 10 people, without considering the objectives, approach of the study or mercury speciation. The results are presented in tables and maps by river basin, displaying hair mercury levels and specifying the studied population and health impact, if any. Results The majority of the studies have been carried out in communities from the central Amazonian regions, particularly on the Tapajós River basin. The results seem quite variable; hair mercury means range from 1.1 to 34.2 μg/g. Most studies did not show any significant difference in hair mercury levels by gender or age. Overall, authors emphasized fish consumption frequency as the main risk factor of exposure. The most studied adverse health effect is by far the neurological performance, especially motricity. However, it is not possible to conclude on the relation between hair mercury levels and health impact in the Amazonian situation because of the relatively small number of studies. Conclusions Hair mercury levels in the Amazonian regions seem to be very heterogenic, depending on several factors. There is no obvious spatial trend and there are many areas that have never been studied. Taking into account the low mercury levels currently handled as acceptable, the

  2. Spatial trends in leaf size of Amazonian rainforest trees

    Directory of Open Access Journals (Sweden)

    A. C. M. Malhado

    2009-02-01

    Full Text Available Leaf size influences many aspects of tree function such as rates of transpiration and photosynthesis and, consequently, often varies in a predictable way in response to environmental gradients. The recent development of pan-Amazonian databases based on permanent botanical plots (e.g. RAINFOR, ATDN has now made it possible to assess trends in leaf size across environmental gradients in Amazonia. Previous plot-based studies have shown that the community structure of Amazonian trees breaks down into at least two major ecological gradients corresponding with variations in soil fertility (decreasing south to northeast and length of the dry season (increasing from northwest to south and east. Here we describe the results of the geographic distribution of leaf size categories based on 121 plots distributed across eight South American countries. We find that, as predicted, the Amazon forest is predominantly populated by tree species and individuals in the mesophyll size class (20.25–182.25 cm2. The geographic distribution of species and individuals with large leaves (>20.25 cm2 is complex but is generally characterized by a higher proportion of such trees in the north-west of the region. Spatially corrected regressions reveal weak correlations between the proportion of large-leaved species and metrics of water availability. We also find a significant negative relationship between leaf size and wood density.

  3. Mitochondrial DNA mapping of social-biological interactions in Brazilian Amazonian African-descendant populations

    Directory of Open Access Journals (Sweden)

    Bruno Maia Carvalho

    2008-01-01

    Full Text Available The formation of the Brazilian Amazonian population has historically involved three main ethnic groups, Amerindian, African and European. This has resulted in genetic investigations having been carried out using classical polymorphisms and molecular markers. To better understand the genetic variability and the micro-evolutionary processes acting in human groups in the Brazilian Amazon region we used mitochondrial DNA to investigate 159 maternally unrelated individuals from five Amazonian African-descendant communities. The mitochondrial lineage distribution indicated a contribution of 50.2% from Africans (L0, L1, L2, and L3, 46.6% from Amerindians (haplogroups A, B, C and D and a small European contribution of 1.3%. These results indicated high genetic diversity in the Amerindian and African lineage groups, suggesting that the Brazilian Amazonian African-descendant populations reflect a possible population amalgamation of Amerindian women from different Amazonian indigenous tribes and African women from different geographic regions of Africa who had been brought to Brazil as slaves. The present study partially mapped the historical biological and social interactions that had occurred during the formation and expansion of Amazonian African-descendant communities.

  4. Investigation of host candidate malaria-associated risk/protective SNPs in a Brazilian Amazonian population.

    Directory of Open Access Journals (Sweden)

    Simone da Silva Santos

    Full Text Available The Brazilian Amazon is a hypo-endemic malaria region with nearly 300,000 cases each year. A variety of genetic polymorphisms, particularly in erythrocyte receptors and immune response related genes, have been described to be associated with susceptibility and resistance to malaria. In order to identify polymorphisms that might be associated with malaria clinical outcomes in a Brazilian Amazonian population, sixty-four human single nucleotide polymorphisms in 37 genes were analyzed using a Sequenom massARRAY iPLEX platform. A total of 648 individuals from two malaria endemic areas were studied, including 535 malaria cases (113 individuals with clinical mild malaria, 122 individuals with asymptomatic infection and 300 individuals with history of previous mild malaria and 113 health controls with no history of malaria. The data revealed significant associations (p<0.003 between one SNP in the IL10 gene (rs1800896 and one SNP in the TLR4 gene (rs4986790 with reduced risk for clinical malaria, one SNP in the IRF1 gene (rs2706384 with increased risk for clinical malaria, one SNP in the LTA gene (rs909253 with protection from clinical malaria and one SNP in the TNF gene (RS1800750 associated with susceptibility to clinical malaria. Also, a new association was found between a SNP in the CTL4 gene (rs2242665, located at the major histocompatibility complex III region, and reduced risk for clinical malaria. This study represents the first association study from an Amazonian population involving a large number of host genetic polymorphisms with susceptibility or resistance to Plasmodium infection and malaria outcomes. Further studies should include a larger number of individuals, refined parameters and a fine-scale map obtained through DNA sequencing to increase the knowledge of the Amazonian population genetic diversity.

  5. Spatial pattern of Amazonian timber species using cartesian and spatial coordinates method

    Directory of Open Access Journals (Sweden)

    Tiago Monteiro Condé

    2016-06-01

    Full Text Available Geographic information system (GIS applied to forest analysis permit the recognition and analysis of spatial patterns of species in two and three dimensional. The aim of this study to demonstrate the efficiency of cartesian and spatial coordinates method (MCCE, method of correcting UTM coordinates of trees location in accordance with the location of field or Cartesian (X ,Y, combined with natural neighbor index (ANND in recognition and analysis of spatial distribution patterns of four commercial timber species in forest management in Caracaraí, Roraima State, Brazil. Simulations were performed on 9 ha, divided into 100 plots of 100 m2 each. Collected data were DBH > 10 cm, commercial and total heights, cartesian coordinates (X,Y and spatial coordinates (UTM. Random spatial patterns were observed in Eschweilera bracteosa and Manilkara huberi. The dispersed and rare spatial patterns were observed in Dinizia excelsa and Cedrelinga cateniformis. MCCE proved to be an efficient method in the recognition and analysis of spatial patterns of native species from Amazon rain forest, as forest planning becomes easier by 2D and 3D simulations.

  6. Modeling Disease Vector Occurrence when Detection Is Imperfect: Infestation of Amazonian Palm Trees by Triatomine Bugs at Three Spatial Scales

    Science.gov (United States)

    Abad-Franch, Fernando; Ferraz, Gonçalo; Campos, Ciro; Palomeque, Francisco S.; Grijalva, Mario J.; Aguilar, H. Marcelo; Miles, Michael A.

    2010-01-01

    Background Failure to detect a disease agent or vector where it actually occurs constitutes a serious drawback in epidemiology. In the pervasive situation where no sampling technique is perfect, the explicit analytical treatment of detection failure becomes a key step in the estimation of epidemiological parameters. We illustrate this approach with a study of Attalea palm tree infestation by Rhodnius spp. (Triatominae), the most important vectors of Chagas disease (CD) in northern South America. Methodology/Principal Findings The probability of detecting triatomines in infested palms is estimated by repeatedly sampling each palm. This knowledge is used to derive an unbiased estimate of the biologically relevant probability of palm infestation. We combine maximum-likelihood analysis and information-theoretic model selection to test the relationships between environmental covariates and infestation of 298 Amazonian palm trees over three spatial scales: region within Amazonia, landscape, and individual palm. Palm infestation estimates are high (40–60%) across regions, and well above the observed infestation rate (24%). Detection probability is higher (∼0.55 on average) in the richest-soil region than elsewhere (∼0.08). Infestation estimates are similar in forest and rural areas, but lower in urban landscapes. Finally, individual palm covariates (accumulated organic matter and stem height) explain most of infestation rate variation. Conclusions/Significance Individual palm attributes appear as key drivers of infestation, suggesting that CD surveillance must incorporate local-scale knowledge and that peridomestic palm tree management might help lower transmission risk. Vector populations are probably denser in rich-soil sub-regions, where CD prevalence tends to be higher; this suggests a target for research on broad-scale risk mapping. Landscape-scale effects indicate that palm triatomine populations can endure deforestation in rural areas, but become rarer in

  7. Modeling disease vector occurrence when detection is imperfect: infestation of Amazonian palm trees by triatomine bugs at three spatial scales.

    Directory of Open Access Journals (Sweden)

    Fernando Abad-Franch

    Full Text Available BACKGROUND: Failure to detect a disease agent or vector where it actually occurs constitutes a serious drawback in epidemiology. In the pervasive situation where no sampling technique is perfect, the explicit analytical treatment of detection failure becomes a key step in the estimation of epidemiological parameters. We illustrate this approach with a study of Attalea palm tree infestation by Rhodnius spp. (Triatominae, the most important vectors of Chagas disease (CD in northern South America. METHODOLOGY/PRINCIPAL FINDINGS: The probability of detecting triatomines in infested palms is estimated by repeatedly sampling each palm. This knowledge is used to derive an unbiased estimate of the biologically relevant probability of palm infestation. We combine maximum-likelihood analysis and information-theoretic model selection to test the relationships between environmental covariates and infestation of 298 Amazonian palm trees over three spatial scales: region within Amazonia, landscape, and individual palm. Palm infestation estimates are high (40-60% across regions, and well above the observed infestation rate (24%. Detection probability is higher ( approximately 0.55 on average in the richest-soil region than elsewhere ( approximately 0.08. Infestation estimates are similar in forest and rural areas, but lower in urban landscapes. Finally, individual palm covariates (accumulated organic matter and stem height explain most of infestation rate variation. CONCLUSIONS/SIGNIFICANCE: Individual palm attributes appear as key drivers of infestation, suggesting that CD surveillance must incorporate local-scale knowledge and that peridomestic palm tree management might help lower transmission risk. Vector populations are probably denser in rich-soil sub-regions, where CD prevalence tends to be higher; this suggests a target for research on broad-scale risk mapping. Landscape-scale effects indicate that palm triatomine populations can endure deforestation

  8. Spatial distribution and functional significance of leaf lamina shape in Amazonian forest trees

    Directory of Open Access Journals (Sweden)

    A. C. M. Malhado

    2009-02-01

    Full Text Available Leaves in tropical forests come in an enormous variety of sizes and shapes, each of which can be ultimately viewed as an adaptation to the complex problem of optimising the capture of light for photosynthesis. However, the fact that many different shape "strategies" coexist within a habitat demonstrate that there are many other intrinsic and extrinsic factors involved, such as the differential investment in support tissues required for different leaf lamina shapes. Here, we take a macrogeographic approach to understanding the function of different lamina shape categories. Specifically, we use 106 permanent plots spread across the Amazon rainforest basin to: (1 describe the geographic distribution of some simple metrics of lamina shape in plots from across Amazonia, and; (2 identify and quantify relationships between key environmental parameters and lamina shape in tropical forests. Because the plots are not randomly distributed across the study area, achieving this latter objective requires the use of statistics that can account for spatial auto-correlation. We found that between 60–70% of the 2791 species and 83 908 individual trees in the dataset could be classified as elliptic (=the widest part of a leaf is on an axis in the middle fifth of the long axis of the leaf. Furthermore, the average Amazonian tree leaf is 2.5 times longer than it is wide and has an entire margin. Contrary to theoretical expectations we found little support for the hypothesis that narrow leaves are an adaptation to dry conditions and low nutrient soils. However, we did find strong regional patterns in leaf lamina length-width ratios and several significant correlations with precipitation variables suggesting that water availability may be exerting an as yet unrecognised selective pressure on leaf shape of rainforest trees. Furthermore, we found a strong correlation between the proportion of trees with non-entire laminas (dissected, toothed, etc. and mean annual

  9. Spatial distribution and functional significance of leaf lamina shape in Amazonian forest trees

    Directory of Open Access Journals (Sweden)

    A. C. M. Malhado

    2009-08-01

    Full Text Available Leaves in tropical forests come in an enormous variety of sizes and shapes, each of which can be ultimately viewed as an adaptation to the complex problem of optimising the capture of light for photosynthesis. However, the fact that many different shape "strategies" coexist within a habitat demonstrate that there are many other intrinsic and extrinsic factors involved, such as the differential investment in support tissues required for different leaf lamina shapes. Here, we take a macrogeographic approach to understanding the function of different lamina shape categories. Specifically, we use 106 permanent plots spread across the Amazon rainforest basin to: 1 describe the geographic distribution of some simple metrics of lamina shape in plots from across Amazonia, and; 2 identify and quantify relationships between key environmental parameters and lamina shape in tropical forests. Because the plots are not randomly distributed across the study area, achieving this latter objective requires the use of statistics that can account for spatial auto-correlation. We found that between 60–70% of the 2791 species and 83 908 individual trees in the dataset could be classified as having elliptic leaves (= the widest part of the leaf is on an axis in the middle fifth of the long axis of the leaf. Furthermore, the average Amazonian tree leaf is 2.5 times longer than it is wide and has an entire margin. Contrary to theoretical expectations we found little support for the hypothesis that narrow leaves are an adaptation to dry conditions. However, we did find strong regional patterns in leaf lamina length-width ratios and several significant correlations with precipitation variables suggesting that water availability may be exerting an as yet unrecognised selective pressure on leaf shape of rainforest trees. Some support was found for the hypothesis that narrow leaves are an adaptation to low nutrient soils. Furthermore, we found a strong correlation between

  10. The Genetic History of Peruvian Quechua‐Lamistas and Chankas: Uniparental DNA Patterns among Autochthonous Amazonian and Andean Populations

    Science.gov (United States)

    Sandoval, José R.; Lacerda, Daniela R.; Acosta, Oscar; Jota, Marilza S.; Robles‐Ruiz, Paulo; Salazar‐Granara, Alberto; Vieira, Pedro Paulo R.; Paz‐y‐Miño, César; Fujita, Ricardo

    2016-01-01

    Summary This study focuses on the genetic history of the Quechua‐Lamistas, inhabitants of the Lamas Province in the San Martin Department, Peru, who speak their own distinct variety of the Quechua family of languages. It has been suggested that different pre‐Columbian ethnic groups from the Peruvian Amazonia, like the Motilones or “shaven heads”, assimilated the Quechua language and then formed the current native population of Lamas. However, many Quechua‐Lamistas claim to be direct descendants of the Chankas, a famous pre‐Columbian indigenous group that escaped from Inca rule in the Andes. To investigate the Quechua‐Lamistas and Chankas’ ancestries, we compared uniparental genetic profiles (17 STRs of Q‐M3 Y‐chromosome and mtDNA complete control region haplotypes) among autochthonous Amazonian and Andean populations from Peru, Bolivia and Ecuador. The phylogeographic and population genetic analyses indicate a fairly heterogeneous ancestry for the Quechua‐Lamistas, while they are closely related to their neighbours who speak Amazonian languages, presenting no direct relationships with populations from the region where the ancient Chankas lived. On the other hand, the genetic profiles of self‐identified Chanka descendants living in Andahuaylas (located in the Apurimac Department, Peru, in the Central Andes) were closely related to those living in Huancavelica and the assumed Chanka Confederation area before the Inca expansion. PMID:26879156

  11. Solution of the spatial neutral model yields new bounds on the Amazonian species richness

    Science.gov (United States)

    Shem-Tov, Yahav; Danino, Matan; Shnerb, Nadav M.

    2017-02-01

    Neutral models, in which individual agents with equal fitness undergo a birth-death-mutation process, are very popular in population genetics and community ecology. Usually these models are applied to populations and communities with spatial structure, but the analytic results presented so far are limited to well-mixed or mainland-island scenarios. Here we combine analytic results and numerics to obtain an approximate solution for the species abundance distribution and the species richness for the neutral model on continuous landscape. We show how the regional diversity increases when the recruitment length decreases and the spatial segregation of species grows. Our results are supported by extensive numerical simulations and allow one to probe the numerically inaccessible regime of large-scale systems with extremely small mutation/speciation rates. Model predictions are compared with the findings of recent large-scale surveys of tropical trees across the Amazon basin, yielding new bounds for the species richness (between 13100 and 15000) and the number of singleton species (between 455 and 690).

  12. Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of Eastern Amazonian Brazil

    DEFF Research Database (Denmark)

    Conn, Jan E.; Vineis, Joseph H.; Bollback, Jonathan Paul;

    2006-01-01

    Anopheles darlingi is the primary malaria vector in Latin America, and is especially important in Amazonian is the primary malaria vector in Latin America, and is especially important in Amazonian Brazil. Historically, control efforts have been focused on indoor house spraying using a variety...... malaria epidemic. In contrast, although An. darlingi was eradicated from some districts of the city of Belem (the capital of Para State) in 1968 to reduce malaria, populations around the water protection area in the eastern district were treated only briefly. To investigate the population structure of An...

  13. Amazonian coca.

    Science.gov (United States)

    Plowman, T

    1981-01-01

    A general overview of various aspects of Amazonian coca (Erythroxylum coca var. ipadu) is presented. This plant is considered a distinct variety of coca which has been developed as a cultivated plant in the upper Amazon basin. It differs from typical Andean coca in morphological, physiological and chemical features as well as in the method of preparation and use by Amazonian tribes. The main topics here discussed are the history, distribution, botany, chemistry, origin, methods of preparation and use, and the effects of Amazonian coca.

  14. Evolution of cooperation in spatially structured populations

    Science.gov (United States)

    Brauchli; Killingback; Doebeli

    1999-10-21

    Using a spatial lattice model of the Iterated Prisoner's Dilemma we studied the evolution of cooperation within the strategy space of all stochastic strategies with a memory of one round. Comparing the spatial model with a randomly mixed model showed that (1) there is more cooperative behaviour in a spatially structured population, (2) PAVLOV and generous variants of it are very successful strategies in the spatial context and (3) in spatially structured populations evolution is much less chaotic than in unstructured populations. In spatially structured populations, generous variants of PAVLOV are found to be very successful strategies in playing the Iterated Prisoner's Dilemma. The main weakness of PAVLOV is that it is exploitable by defective strategies. In a spatial context this disadvantage is much less important than the good error correction of PAVLOV, and especially of generous PAVLOV, because in a spatially structured population successful strategies always build clusters. Copyright 1999 Academic Press.

  15. Spatial distributions of niche-constructing populations

    Directory of Open Access Journals (Sweden)

    Xiaozhuo Han

    2015-12-01

    Full Text Available Niche construction theory regards organisms not only as the object of natural selection but also an active subject that can change their own selective pressure through eco-evolutionary feedbacks. Through reviewing the existing works on the theoretical models of niche construction, here we present the progress made on how niche construction influences genetic structure of spatially structured populations and the spatial-temporal dynamics of metapopulations, with special focuses on mathematical models and simulation methods. The majority of results confirmed that niche construction can significantly alter the evolutionary trajectories of structured populations. Organism-environmental interactions induced by niche construction can have profound influence on the dynamics, competition and diversity of metapopulations. It can affect fine-scale spatially distribution of species and spatial heterogeneity of the environment. We further propose a few research directions with potentials, such as applying adaptive dynamics or spatial game theory to explore the effect of niche construction on phenotypic evolution and diversification.

  16. Standing variation in spatially growing populations

    Science.gov (United States)

    Fusco, Diana; Gralka, Matti; Kayser, Jona; Hallatschek, Oskar

    Patterns of genetic diversity not only reflect the evolutionary history of a species but they can also determine the evolutionary response to environmental change. For instance, the standing genetic diversity of a microbial population can be key to rescue in the face of an antibiotic attack. While genetic diversity is in general shaped by both demography and evolution, very little is understood when both factors matter, as e.g. for biofilms with pronounced spatial organization. Here, we quantitatively explore patterns of genetic diversity by using microbial colonies and well-mixed test tube populations as antipodal model systems with extreme and very little spatial structure, respectively. We find that Eden model simulations and KPZ theory can remarkably reproduce the genetic diversity in microbial colonies obtained via population sequencing. The excellent agreement allows to draw conclusions on the resilience of spatially-organized populations and to uncover new strategies to contain antibiotic resistance.

  17. Mortality as a key driver of the spatial distribution of aboveground biomass in Amazonian forest: results from a dynamic vegetation model

    Directory of Open Access Journals (Sweden)

    N. Delbart

    2010-10-01

    Full Text Available Dynamic Vegetation Models (DVMs simulate energy, water and carbon fluxes between the ecosystem and the atmosphere, between the vegetation and the soil, and between plant organs. They also estimate the potential biomass of a forest in equilibrium having grown under a given climate and atmospheric CO2 level. In this study, we evaluate the Above Ground Woody Biomass (AGWB and the above ground woody Net Primary Productivity (NPPAGW simulated by the DVM ORCHIDEE across Amazonian forests, by comparing the simulation results to a large set of ground measurements (220 sites for biomass, 104 sites for NPPAGW. We found that the NPPAGW is on average overestimated by 63%. We also found that the fraction of biomass that is lost through mortality is 85% too high. These model biases nearly compensate each other to give an average simulated AGWB close to the ground measurement average. Nevertheless, the simulated AGWB spatial distribution differs significantly from the observations. Then, we analyse the discrepancies in biomass with regards to discrepancies in NPPAGW and those in the rate of mortality. When we correct for the error in NPPAGW, the errors on the spatial variations in AGWB are exacerbated, showing clearly that a large part of the misrepresentation of biomass comes from a wrong modelling of mortality processes.

    Previous studies showed that Amazonian forests with high productivity have a higher mortality rate than forests with lower productivity. We introduce this relationship, which results in strongly improved modelling of biomass and of its spatial variations. We discuss the possibility of modifying the mortality modelling in ORCHIDEE, and the opportunity to improve forest productivity modelling through the integration of biomass measurements, in particular from remote sensing.

  18. Mortality as a key driver of the spatial distribution of aboveground biomass in Amazonian forests: results from a Dynamic Vegetation Model

    Directory of Open Access Journals (Sweden)

    N. Delbart

    2010-04-01

    Full Text Available Dynamic Vegetation Models (DVMs simulate energy, water and carbon fluxes between the ecosystem and the atmosphere, between the vegetation and the soil, and between plant organs. They also estimate the potential biomass of a forest in equilibrium having grown under a given climate and atmospheric CO2 level. In this study, we evaluate the above ground woody biomass (AGWB and the above ground woody Net Primary Productivity (NPPAGW simulated by the DVM ORCHIDEE across Amazonian forests, by comparing the simulation results to a large set of ground measurements (220 sites for biomass, 104 sites for NPPAGW. We found that the NPPAGW is on average overestimated by 63%. We also found that the fraction of biomass that is lost through mortality is 85% too high. These model biases nearly compensate each other to give an average simulated AGWB close to the ground measurement average. Nevertheless, the simulated AGWB spatial distribution differs significantly from the observations. Then, we analyse the discrepancies in biomass with regards to discrepancies in NPPAGW and those in the rate of mortality. When we correct for the error in NPPAGW, the errors on the spatial variations in AGWB are exacerbated, showing clearly that a large part of the misrepresentation of biomass comes from a wrong modelling of mortality processes.

    Previous studies showed that Amazonian forests with high productivity have a higher mortality rate than forests with lower productivity. We introduce this relationship, which results in strongly improved modelling of biomass and of its spatial variations. We discuss the possibility of modifying the mortality modelling in ORCHIDEE, and the opportunity to improve forest productivity modelling through the integration of biomass measurements, in particular from remote sensing.

  19. Underlying Factors Associated with Anemia in Amazonian Children: A Population-Based, Cross-Sectional Study

    OpenAIRE

    Cardoso, Marly A.; Scopel,Kézia K.G.; Muniz, Pascoal T.; Eduardo Villamor; Marcelo U. Ferreira

    2012-01-01

    Background: Although iron deficiency is considered to be the main cause of anemia in children worldwide, other contributors to childhood anemia remain little studied in developing countries. We estimated the relative contributions of different factors to anemia in a population-based, cross-sectional survey. Methodology: We obtained venous blood samples from 1111 children aged 6 months to 10 years living in the frontier town of Acrelandia, northwest Brazil, to estimate the prevalence of anemia...

  20. Underlying factors associated with anemia in Amazonian children: a population-based, cross-sectional study.

    Directory of Open Access Journals (Sweden)

    Marly A Cardoso

    Full Text Available BACKGROUND: Although iron deficiency is considered to be the main cause of anemia in children worldwide, other contributors to childhood anemia remain little studied in developing countries. We estimated the relative contributions of different factors to anemia in a population-based, cross-sectional survey. METHODOLOGY: We obtained venous blood samples from 1111 children aged 6 months to 10 years living in the frontier town of Acrelândia, northwest Brazil, to estimate the prevalence of anemia and iron deficiency by measuring hemoglobin, erythrocyte indices, ferritin, soluble transferrin receptor, and C-reactive protein concentrations. Children were simultaneously screened for vitamin A, vitamin B(12, and folate deficiencies; intestinal parasite infections; glucose-6-phosphate dehydrogenase deficiency; and sickle cell trait carriage. Multiple Poisson regression and adjusted prevalence ratios (aPR were used to describe associations between anemia and the independent variables. PRINCIPAL FINDINGS: The prevalence of anemia, iron deficiency, and iron-deficiency anemia were 13.6%, 45.4%, and 10.3%, respectively. Children whose families were in the highest income quartile, compared with the lowest, had a lower risk of anemia (aPR, 0.60; 95%CI, 0.37-0.98. Child age (2 pregnancies, 2.01; 1.40-2.87 were positively associated with anemia. Other associated correlates were iron deficiency (2.1; 1.4-3.0, vitamin B(12 (1.4; 1.0-2.2, and folate (2.0; 1.3-3.1 deficiencies, and C-reactive protein concentrations (>5 mg/L, 1.5; 1.1-2.2. CONCLUSIONS: Addressing morbidities and multiple nutritional deficiencies in children and mothers and improving the purchasing power of poorer families are potentially important interventions to reduce the burden of anemia.

  1. Stochastic population growth in spatially heterogeneous environments.

    Science.gov (United States)

    Evans, Steven N; Ralph, Peter L; Schreiber, Sebastian J; Sen, Arnab

    2013-02-01

    Classical ecological theory predicts that environmental stochasticity increases extinction risk by reducing the average per-capita growth rate of populations. For sedentary populations in a spatially homogeneous yet temporally variable environment, a simple model of population growth is a stochastic differential equation dZ(t) = μZ(t)dt + σZ(t)dW(t), t ≥ 0, where the conditional law of Z(t+Δt)-Z(t) given Z(t) = z has mean and variance approximately z μΔt and z²σ²Δt when the time increment Δt is small. The long-term stochastic growth rate lim(t→∞) t⁻¹ log Z(t) for such a population equals μ − σ²/2 . Most populations, however, experience spatial as well as temporal variability. To understand the interactive effects of environmental stochasticity, spatial heterogeneity, and dispersal on population growth, we study an analogous model X(t) = (X¹(t) , . . . , X(n)(t)), t ≥ 0, for the population abundances in n patches: the conditional law of X(t+Δt) given X(t) = x is such that the conditional mean of X(i)(t+Δt) − X(i)(t) is approximately [x(i)μ(i) + Σ(j) (x(j) D(ji) − x(i) D(i j) )]Δt where μ(i) is the per capita growth rate in the ith patch and D(ij) is the dispersal rate from the ith patch to the jth patch, and the conditional covariance of X(i)(t+Δt)− X(i)(t) and X(j)(t+Δt) − X(j)(t) is approximately x(i)x(j)σ(ij)Δt for some covariance matrix Σ = (σ(ij)). We show for such a spatially extended population that if S(t) = X¹(t)+· · ·+ X(n)(t) denotes the total population abundance, then Y(t) = X(t)/S(t), the vector of patch proportions, converges in law to a random vector Y(∞) as t → ∞, and the stochastic growth rate lim(t→∞) t⁻¹ log S(t) equals the space-time average per-capita growth rate Σ(i)μ(i)E[Y(i)(∞)] experienced by the population minus half of the space-time average temporal variation E[Σ(i,j) σ(i j)Y(i)(∞) Y(j)(∞)] experienced by the population. Using this characterization of the

  2. The Determinants Of Population Health Spatial Disparities

    Directory of Open Access Journals (Sweden)

    Modranka Emilia

    2014-12-01

    Full Text Available Health of the population is one of the basic factors of social development. The results of empirical studies indicate a number of factors determining the level of health of the population related to access to health care services, the level of environmental pollution and the wealth of society. It must be assumed that the observed disparities in the health depend on distributions of particular determinants. The aim of the article is to assess the significance of the main factors affecting the occurrence of spatial disparities in the level of social development districts NTS-4 in terms of health of the population. The analysis was based on estimates of the Spatial Durbin Model (SDM which takes into account the impact of neighborhood spatial units on level of dependent variable and the explanatory variables. The size of the level of social development in terms of health of the population in the study was approximate by the aggregate value of the index, which is the local component of the Local Human Development Index LHDI.

  3. Method for spatially distributing a population

    Science.gov (United States)

    Bright, Edward A [Knoxville, TN; Bhaduri, Budhendra L [Knoxville, TN; Coleman, Phillip R [Knoxville, TN; Dobson, Jerome E [Lawrence, KS

    2007-07-24

    A process for spatially distributing a population count within a geographically defined area can include the steps of logically correlating land usages apparent from a geographically defined area to geospatial features in the geographically defined area and allocating portions of the population count to regions of the geographically defined area having the land usages, according to the logical correlation. The process can also include weighing the logical correlation for determining the allocation of portions of the population count and storing the allocated portions within a searchable data store. The logically correlating step can include the step of logically correlating time-based land usages to geospatial features of the geographically defined area. The process can also include obtaining a population count for the geographically defined area, organizing the geographically defined area into a plurality of sectors, and verifying the allocated portions according to direct observation.

  4. Fixation-coexistence transition in spatial populations

    Science.gov (United States)

    Dall'Asta, Luca; Caccioli, Fabio; Beghè, Deborah

    2013-01-01

    Balancing selection is a special case of frequency-dependent selection that is known to be the major force for the maintenance of biodiversity and polymorphism in natural populations. In finite populations, genetic drift eventually drives the population to fixation to the detriment of biodiversity. The interplay between selection and genetic drift is much richer in spatially extended populations, where the local density of individuals can be low even in the limit of infinitely large systems. We consider the limit of low local density of individuals (strong genetic drift) that is well represented by a modified voter model. We show analytically the existence of a non-equilibrium phase transition between a region in which fixation always occurs and a coexistence phase for a one-dimensional system. We also provide a characterization of the dynamical properties of the system, in particular for what concerns the coarsening behavior and the speed of propagation of heterozygosity above the threshold.

  5. Selection of Cooperation in Spatially Structured Populations

    Science.gov (United States)

    Yang, Hyunmo; Ghim, Cheol-Min

    The social dilemma games give rise to an emergence of cooperation in which altruistic individuals survive the natural selection at higher rate than random chance. We try to extend our understanding of this spatial reciprocity by including the impact of degree-degree correlation on the propensity toward prosocial behaviour in an otherwise well-mixed population. In a stochastic death-birth process with weak selection, we find that the disassortative degree mixing, or negative correlation between the degrees of neighbouring nodes significantly promotes the fixation of cooperators whereas the assortative mixing acts to suppress it. This is consistent with the fact that the spatial heterogeneity weakens the average tendency of a population to cooperate, which we describe in a unified scheme of the effective isothermality in coarse-grained networks. We also discuss the individual-level incentives that indirectly foster restructuring the social networks toward the more cooperative topologies.

  6. Externalities, Floating Population and Spatial Agglomeration

    Institute of Scientific and Technical Information of China (English)

    Du Yu; Wang Chuansheng; Fan Jie

    2007-01-01

    With the further development of socialist market economy,the mobility of factor markets in China,especially the labor market.is strengthened.Extemalities interacts with the agglomeration of productive factors.Under the framework of new economic geographg this article presents a theoretical model involving the endogenous population density affected by urban externalities.Results show that the population density is more concentrated around the center because the degree and extent of interaction between individuals intensifies when the distance from the center decreases.When there are several extemalifies resonurces,the aggregation of externalities changes the configuration of spatial factor allocation.These results fit well with the empirical facts about the decreasing density of floating population along the cities of Guangzhou,Dongguan and Shenzhen in Guangdong Province which is situat d in the eastern coast of the Pearl River Delta.We find that under the impacts of externalities released from Hong Kong into the coast,floating population Was more concentrated around Shenzhen and Dongguan,which are more adjacent to Hong Kong compared with Guangzhou City.

  7. [Thoughts on the spatial distribution of population].

    Science.gov (United States)

    Borisovna, L; Velez, F

    1991-12-01

    city in all age groups, especially in the 15-19 cohort. A large proportion of the migrants were more highly educated than the average city dweller. The average rate of growth of the working age population in the city was 6% from 1970-80, implying a need for 35,000 new jobs annually. But in 1980-90, only 10,000 new jobs were added each year. The relative importance of tertiary sector employment has increased significantly. A review of the population characteristics and spatial distribution of the city and state of Puebla strongly suggests that decentralization should be vigorously pursued as a means of improving the wellbeing of the population.

  8. The role of carbohydrates in seed germination and seedling establishment of Himatanthus sucuuba, an Amazonian tree with populations adapted to flooded and non-flooded conditions

    Science.gov (United States)

    da Silva Ferreira, Cristiane; Piedade, Maria Teresa Fernandez; Tiné, Marco Aurélio Silva; Rossatto, Davi Rodrigo; Parolin, Pia; Buckeridge, Marcos Silveira

    2009-01-01

    Background and Aims In the Amazonian floodplains plants withstand annual periods of flooding which can last 7 months. Under these conditions seedlings remain submerged in the dark for long periods since light penetration in the water is limited. Himatanthus sucuuba is a tree species found in the ‘várzea’ (VZ) floodplains and adjacent non-flooded ‘terra-firme’ (TF) forests. Biochemical traits which enhance flood tolerance and colonization success of H. sucuuba in periodically flooded environments were investigated. Methods Storage carbohydrates of seeds of VZ and TF populations were extracted and analysed by HPAEC/PAD. Starch was analysed by enzyme (glucoamylase) degradation followed by quantification of glucose oxidase. Carbohydrate composition of roots of VZ and TF seedlings was studied after experimental exposure to a 15-d period of submersion in light versus darkness. Key Results The endosperm contains a large proportion of the seed reserves, raffinose being the main non-structural carbohydrate. Around 93 % of the cell wall storage polysaccharides (percentage dry weight basis) in the endosperm of VZ seeds was composed of mannose, while soluble sugars accounted for 2·5%. In contrast, 74 % of the endosperm in TF seeds was composed of galactomannans, while 22 % of the endosperm was soluble sugars. This suggested a larger carbohydrate allocation to germination in TF populations whereas VZ populations allocate comparatively more to carbohydrates mobilized during seedling development. The concentration of root non-structural carbohydrates in non-flooded seedlings strongly decreased after a 15-d period of darkness, whereas flooded seedlings were less affected. These effects were more pronounced in TF seedlings, which showed significantly lower root non-structural carbohydrate concentrations. Conclusions There seem to be metabolic adjustments in VZ but not TF seedlings that lead to adaptation to the combined stresses of darkness and flooding. This seems to be

  9. Spatially correlated disturbances in a locally dispersing population model.

    Science.gov (United States)

    Hiebeler, David

    2005-01-01

    The basic contact process in continuous time is studied, where instead of single occupied sites becoming empty independently, larger-scale disturbance events simultaneously remove the population from contiguous blocks of sites. Stochastic spatial simulations and pair approximations were used to investigate the model. Increasing the spatial scale of disturbance events increases spatial clustering of the population and variability in growth rates within localized regions, reduces the effective overall population density, and increases the critical reproductive rate necessary for the population to persist. Pair approximations yield a closed-form analytic expression for equilibrium population density and the critical value necessary for persistence.

  10. Amazonian malaria: asymptomatic human reservoirs, diagnostic challenges, environmentally driven changes in mosquito vector populations, and the mandate for sustainable control strategies.

    Science.gov (United States)

    da Silva-Nunes, Mônica; Moreno, Marta; Conn, Jan E; Gamboa, Dionicia; Abeles, Shira; Vinetz, Joseph M; Ferreira, Marcelo U

    2012-03-01

    Across the Americas and the Caribbean, nearly 561,000 slide-confirmed malaria infections were reported officially in 2008. The nine Amazonian countries accounted for 89% of these infections; Brazil and Peru alone contributed 56% and 7% of them, respectively. Local populations of the relatively neglected parasite Plasmodium vivax, which currently accounts for 77% of the regional malaria burden, are extremely diverse genetically and geographically structured. At a time when malaria elimination is placed on the public health agenda of several endemic countries, it remains unclear why malaria proved so difficult to control in areas of relatively low levels of transmission such as the Amazon Basin. We hypothesize that asymptomatic parasite carriage and massive environmental changes that affect vector abundance and behavior are major contributors to malaria transmission in epidemiologically diverse areas across the Amazon Basin. Here we review available data supporting this hypothesis and discuss their implications for current and future malaria intervention policies in the region. Given that locally generated scientific evidence is urgently required to support malaria control interventions in Amazonia, we briefly describe the aims of our current field-oriented malaria research in rural villages and gold-mining enclaves in Peru and a recently opened agricultural settlement in Brazil.

  11. Prevalência de cárie dental em uma população de escolares da região amazônica Prevalence of dental caries in a school population of the amazonian region

    Directory of Open Access Journals (Sweden)

    Antonio David Corrêa Normando

    1990-08-01

    Full Text Available Considerando-se a ausência de dados sobre a prevalência de cárie dental em uma população tipicamente amazônida, foi feito um levantamento epidemiológico em 103 escolares na região da Ilha de Sirituba, no Município de Abaetetuba, Estado do Pará, Brasil. O CPOD médio encontrado foi de 6,5 e o ceo de 5,4. Apesar da primitividade do local, o alto índice de cárie pode estar relacionado a diversos fatores, dentre os quais deve ser incluída a influência urbana na alimentação, principalmente pelo açúcar, criando novos hábitos alimentares que alteraram fundamentalmente a dieta da região.In view of the lack of data as to the prevalence of dental caries among typical amazonian populations, the authors carried out an epidemiological study of 103 schoolchildren from Sirituba Island, Abaetetuba, Pará, Brazil. The mean values found for DMFT and deft were 6.5 and 5.4 respectively. Although the region is very primitive, this high prevalence may be linked to several factors, among which is the urban influence, mainly through the use of sugar, on food habits in such a way as fundamentally to alter the diet of the amazonian population.

  12. Spatial structuring within a reservoir fish population: implications for management

    Science.gov (United States)

    Stewart, David R.; Long, James M.; Shoup, Daniel E.

    2014-01-01

    Spatial structuring in reservoir fish populations can exist because of environmental gradients, species-specific behaviour, or even localised fishing effort. The present study investigated whether white crappie exhibited evidence of improved population structure where the northern more productive half of a lake is closed to fishing to provide waterfowl hunting opportunities. Population response to angling was modelled for each substock of white crappie (north (protected) and south (unprotected) areas), the entire lake (single-stock model) and by combining simulations of the two independent substock models (additive model). White crappie in the protected area were more abundant, consisting of larger, older individuals, and exhibited a lower total annual mortality rate than in the unprotected area. Population modelling found that fishing mortality rates between 0.1 and 0.3 resulted in sustainable populations (spawning potential ratios (SPR) >0.30). The population in the unprotected area appeared to be more resilient (SPR > 0.30) at the higher fishing intensities (0.35–0.55). Considered additively, the whole-lake fishery appeared more resilient than when modelled as a single-panmictic stock. These results provided evidence of spatial structuring in reservoir fish populations, and we recommend model assessments used to guide management decisions should consider those spatial differences in other populations where they exist.

  13. Estimating the global conservation status of more than 15,000 Amazonian tree species

    Science.gov (United States)

    ter Steege, Hans; Pitman, Nigel C. A.; Killeen, Timothy J.; Laurance, William F.; Peres, Carlos A.; Guevara, Juan Ernesto; Salomão, Rafael P.; Castilho, Carolina V.; Amaral, Iêda Leão; de Almeida Matos, Francisca Dionízia; de Souza Coelho, Luiz; Magnusson, William E.; Phillips, Oliver L.; de Andrade Lima Filho, Diogenes; de Jesus Veiga Carim, Marcelo; Irume, Mariana Victória; Martins, Maria Pires; Molino, Jean-François; Sabatier, Daniel; Wittmann, Florian; López, Dairon Cárdenas; da Silva Guimarães, José Renan; Mendoza, Abel Monteagudo; Vargas, Percy Núñez; Manzatto, Angelo Gilberto; Reis, Neidiane Farias Costa; Terborgh, John; Casula, Katia Regina; Montero, Juan Carlos; Feldpausch, Ted R.; Honorio Coronado, Euridice N.; Montoya, Alvaro Javier Duque; Zartman, Charles Eugene; Mostacedo, Bonifacio; Vasquez, Rodolfo; Assis, Rafael L.; Medeiros, Marcelo Brilhante; Simon, Marcelo Fragomeni; Andrade, Ana; Camargo, José Luís; Laurance, Susan G. W.; Nascimento, Henrique Eduardo Mendonça; Marimon, Beatriz S.; Marimon, Ben-Hur; Costa, Flávia; Targhetta, Natalia; Vieira, Ima Célia Guimarães; Brienen, Roel; Castellanos, Hernán; Duivenvoorden, Joost F.; Mogollón, Hugo F.; Piedade, Maria Teresa Fernandez; Aymard C., Gerardo A.; Comiskey, James A.; Damasco, Gabriel; Dávila, Nállarett; García-Villacorta, Roosevelt; Diaz, Pablo Roberto Stevenson; Vincentini, Alberto; Emilio, Thaise; Levis, Carolina; Schietti, Juliana; Souza, Priscila; Alonso, Alfonso; Dallmeier, Francisco; Ferreira, Leandro Valle; Neill, David; Araujo-Murakami, Alejandro; Arroyo, Luzmila; Carvalho, Fernanda Antunes; Souza, Fernanda Coelho; do Amaral, Dário Dantas; Gribel, Rogerio; Luize, Bruno Garcia; Pansonato, Marcelo Petrati; Venticinque, Eduardo; Fine, Paul; Toledo, Marisol; Baraloto, Chris; Cerón, Carlos; Engel, Julien; Henkel, Terry W.; Jimenez, Eliana M.; Maas, Paul; Mora, Maria Cristina Peñuela; Petronelli, Pascal; Revilla, Juan David Cardenas; Silveira, Marcos; Stropp, Juliana; Thomas-Caesar, Raquel; Baker, Tim R.; Daly, Doug; Paredes, Marcos Ríos; da Silva, Naara Ferreira; Fuentes, Alfredo; Jørgensen, Peter Møller; Schöngart, Jochen; Silman, Miles R.; Arboleda, Nicolás Castaño; Cintra, Bruno Barçante Ladvocat; Valverde, Fernando Cornejo; Di Fiore, Anthony; Phillips, Juan Fernando; van Andel, Tinde R.; von Hildebrand, Patricio; Barbosa, Edelcilio Marques; de Matos Bonates, Luiz Carlos; de Castro, Deborah; de Sousa Farias, Emanuelle; Gonzales, Therany; Guillaumet, Jean-Louis; Hoffman, Bruce; Malhi, Yadvinder; de Andrade Miranda, Ires Paula; Prieto, Adriana; Rudas, Agustín; Ruschell, Ademir R.; Silva, Natalino; Vela, César I. A.; Vos, Vincent A.; Zent, Eglée L.; Zent, Stanford; Cano, Angela; Nascimento, Marcelo Trindade; Oliveira, Alexandre A.; Ramirez-Angulo, Hirma; Ramos, José Ferreira; Sierra, Rodrigo; Tirado, Milton; Medina, Maria Natalia Umaña; van der Heijden, Geertje; Torre, Emilio Vilanova; Vriesendorp, Corine; Wang, Ophelia; Young, Kenneth R.; Baider, Claudia; Balslev, Henrik; de Castro, Natalia; Farfan-Rios, William; Ferreira, Cid; Mendoza, Casimiro; Mesones, Italo; Torres-Lezama, Armando; Giraldo, Ligia Estela Urrego; Villarroel, Daniel; Zagt, Roderick; Alexiades, Miguel N.; Garcia-Cabrera, Karina; Hernandez, Lionel; Huamantupa-Chuquimaco, Isau; Milliken, William; Cuenca, Walter Palacios; Pansini, Susamar; Pauletto, Daniela; Arevalo, Freddy Ramirez; Sampaio, Adeilza Felipe; Valderrama Sandoval, Elvis H.; Gamarra, Luis Valenzuela

    2015-01-01

    Estimates of extinction risk for Amazonian plant and animal species are rare and not often incorporated into land-use policy and conservation planning. We overlay spatial distribution models with historical and projected deforestation to show that at least 36% and up to 57% of all Amazonian tree species are likely to qualify as globally threatened under International Union for Conservation of Nature (IUCN) Red List criteria. If confirmed, these results would increase the number of threatened plant species on Earth by 22%. We show that the trends observed in Amazonia apply to trees throughout the tropics, and we predict that most of the world’s >40,000 tropical tree species now qualify as globally threatened. A gap analysis suggests that existing Amazonian protected areas and indigenous territories will protect viable populations of most threatened species if these areas suffer no further degradation, highlighting the key roles that protected areas, indigenous peoples, and improved governance can play in preventing large-scale extinctions in the tropics in this century. PMID:26702442

  14. Estimating the global conservation status of more than 15,000 Amazonian tree species.

    Science.gov (United States)

    Ter Steege, Hans; Pitman, Nigel C A; Killeen, Timothy J; Laurance, William F; Peres, Carlos A; Guevara, Juan Ernesto; Salomão, Rafael P; Castilho, Carolina V; Amaral, Iêda Leão; de Almeida Matos, Francisca Dionízia; de Souza Coelho, Luiz; Magnusson, William E; Phillips, Oliver L; de Andrade Lima Filho, Diogenes; de Jesus Veiga Carim, Marcelo; Irume, Mariana Victória; Martins, Maria Pires; Molino, Jean-François; Sabatier, Daniel; Wittmann, Florian; López, Dairon Cárdenas; da Silva Guimarães, José Renan; Mendoza, Abel Monteagudo; Vargas, Percy Núñez; Manzatto, Angelo Gilberto; Reis, Neidiane Farias Costa; Terborgh, John; Casula, Katia Regina; Montero, Juan Carlos; Feldpausch, Ted R; Honorio Coronado, Euridice N; Montoya, Alvaro Javier Duque; Zartman, Charles Eugene; Mostacedo, Bonifacio; Vasquez, Rodolfo; Assis, Rafael L; Medeiros, Marcelo Brilhante; Simon, Marcelo Fragomeni; Andrade, Ana; Camargo, José Luís; Laurance, Susan G W; Nascimento, Henrique Eduardo Mendonça; Marimon, Beatriz S; Marimon, Ben-Hur; Costa, Flávia; Targhetta, Natalia; Vieira, Ima Célia Guimarães; Brienen, Roel; Castellanos, Hernán; Duivenvoorden, Joost F; Mogollón, Hugo F; Piedade, Maria Teresa Fernandez; Aymard C, Gerardo A; Comiskey, James A; Damasco, Gabriel; Dávila, Nállarett; García-Villacorta, Roosevelt; Diaz, Pablo Roberto Stevenson; Vincentini, Alberto; Emilio, Thaise; Levis, Carolina; Schietti, Juliana; Souza, Priscila; Alonso, Alfonso; Dallmeier, Francisco; Ferreira, Leandro Valle; Neill, David; Araujo-Murakami, Alejandro; Arroyo, Luzmila; Carvalho, Fernanda Antunes; Souza, Fernanda Coelho; do Amaral, Dário Dantas; Gribel, Rogerio; Luize, Bruno Garcia; Pansonato, Marcelo Petrati; Venticinque, Eduardo; Fine, Paul; Toledo, Marisol; Baraloto, Chris; Cerón, Carlos; Engel, Julien; Henkel, Terry W; Jimenez, Eliana M; Maas, Paul; Mora, Maria Cristina Peñuela; Petronelli, Pascal; Revilla, Juan David Cardenas; Silveira, Marcos; Stropp, Juliana; Thomas-Caesar, Raquel; Baker, Tim R; Daly, Doug; Paredes, Marcos Ríos; da Silva, Naara Ferreira; Fuentes, Alfredo; Jørgensen, Peter Møller; Schöngart, Jochen; Silman, Miles R; Arboleda, Nicolás Castaño; Cintra, Bruno Barçante Ladvocat; Valverde, Fernando Cornejo; Di Fiore, Anthony; Phillips, Juan Fernando; van Andel, Tinde R; von Hildebrand, Patricio; Barbosa, Edelcilio Marques; de Matos Bonates, Luiz Carlos; de Castro, Deborah; de Sousa Farias, Emanuelle; Gonzales, Therany; Guillaumet, Jean-Louis; Hoffman, Bruce; Malhi, Yadvinder; de Andrade Miranda, Ires Paula; Prieto, Adriana; Rudas, Agustín; Ruschell, Ademir R; Silva, Natalino; Vela, César I A; Vos, Vincent A; Zent, Eglée L; Zent, Stanford; Cano, Angela; Nascimento, Marcelo Trindade; Oliveira, Alexandre A; Ramirez-Angulo, Hirma; Ramos, José Ferreira; Sierra, Rodrigo; Tirado, Milton; Medina, Maria Natalia Umaña; van der Heijden, Geertje; Torre, Emilio Vilanova; Vriesendorp, Corine; Wang, Ophelia; Young, Kenneth R; Baider, Claudia; Balslev, Henrik; de Castro, Natalia; Farfan-Rios, William; Ferreira, Cid; Mendoza, Casimiro; Mesones, Italo; Torres-Lezama, Armando; Giraldo, Ligia Estela Urrego; Villarroel, Daniel; Zagt, Roderick; Alexiades, Miguel N; Garcia-Cabrera, Karina; Hernandez, Lionel; Huamantupa-Chuquimaco, Isau; Milliken, William; Cuenca, Walter Palacios; Pansini, Susamar; Pauletto, Daniela; Arevalo, Freddy Ramirez; Sampaio, Adeilza Felipe; Valderrama Sandoval, Elvis H; Gamarra, Luis Valenzuela

    2015-11-01

    Estimates of extinction risk for Amazonian plant and animal species are rare and not often incorporated into land-use policy and conservation planning. We overlay spatial distribution models with historical and projected deforestation to show that at least 36% and up to 57% of all Amazonian tree species are likely to qualify as globally threatened under International Union for Conservation of Nature (IUCN) Red List criteria. If confirmed, these results would increase the number of threatened plant species on Earth by 22%. We show that the trends observed in Amazonia apply to trees throughout the tropics, and we predict that most of the world's >40,000 tropical tree species now qualify as globally threatened. A gap analysis suggests that existing Amazonian protected areas and indigenous territories will protect viable populations of most threatened species if these areas suffer no further degradation, highlighting the key roles that protected areas, indigenous peoples, and improved governance can play in preventing large-scale extinctions in the tropics in this century.

  15. Hêliconias como alternativa econômica para comunidades amazônicas Heliconias of the Baixo Juruá Extractive Reserve: economical potential for Amazonian traditional population

    Directory of Open Access Journals (Sweden)

    Rafael Arruda

    2008-12-01

    Heliconia genus is one of the colorful groups of tropical forest non-timber plants. However, as an income source, it is unknown to the RESEX communities. We registered 11 species of Heliconia in the Baixo Juruá Extractive Reserve with potential as ornamental plants: H. acuminata, H. densiflora, H. hirsuta, H. lasiorachis, H. stricta, H. chartacea, H. juruana, H. marginata, H. psittacorum, H. spathocircinata and H. tenebrosa. Currently in Brazil, the commercialization of ornamental plants is expanding, but the Amazonian region seems not to be following this trend, demonstrating perhaps lack of political initiative. Even though it causes some impact on fauna an flora, the practice of extractive economy inside the forest reserves in Amazonia helps keep the ecological functions of the forest intact, preventing future losses of regional biodiversity. Additionally, it guarantees the continuity of traditional populations in the natural areas, with direct effect on the local and regional economy.

  16. Spatially resolved fish population analysis for designing MPAs

    DEFF Research Database (Denmark)

    Christensen, Asbjørn; Mosegaard, Henrik; Jensen, Henrik

    2009-01-01

    The sandeel population analysis model (SPAM) is presented as a simulation tool for exploring the efficiency of Marine Protected Areas (MPAs) for sandeel stocks. SPAM simulates spatially resolved sandeel population distributions, based on a high-resolution map of all fishery-established sandbank...... habitats for settled sandeels, combined with a life-cycle model for survival, growth, and reproduction, and a three-dimensional hydrodynamic model for describing larval transport between the network of habitats. SPAM couples stock dynamics to ecosystem and anthropogenic forcing via well-defined drivers....... The SPAM framework was tested using ICES statistical rectangle 37F2 as an MPA, and the impact on sandeel populations within the MPA and neighbouring habitats was investigated. Increased larval spillover compensated for lost catches inside the MPA. The temporal and spatial scales of stock response to MPAs...

  17. Spatial and temporal dynamics of infected populations: the Mexican epidemic

    CERN Document Server

    Rodriguez-Meza, Mario A

    2012-01-01

    Recently the A/H1N1-2009 virus pandemic appeared in Mexico and in other nations. We present a study of this pandemic in the Mexican case using the SIR model to describe epidemics. This model is one of the simplest models but it has been a successful description of some epidemics of closed populations. We consider the data for the Mexican case and use the SIR model to make some predictions. Then, we generalize the SIR model in order to describe the spatial dynamics of the disease. We make a study of the spatial and temporal spread of the infected population with model parameters that are consistent with temporal SIR model parameters obtained by fitting to the Mexican case.

  18. Optimal exploitation of spatially distributed trophic resources and population stability

    Science.gov (United States)

    Basset, A.; Fedele, M.; DeAngelis, D.L.

    2002-01-01

    The relationships between optimal foraging of individuals and population stability are addressed by testing, with a spatially explicit model, the effect of patch departure behaviour on individual energetics and population stability. A factorial experimental design was used to analyse the relevance of the behavioural factor in relation to three factors that are known to affect individual energetics; i.e. resource growth rate (RGR), assimilation efficiency (AE), and body size of individuals. The factorial combination of these factors produced 432 cases, and 1000 replicate simulations were run for each case. Net energy intake rates of the modelled consumers increased with increasing RGR, consumer AE, and consumer body size, as expected. Moreover, through their patch departure behaviour, by selecting the resource level at which they departed from the patch, individuals managed to substantially increase their net energy intake rates. Population stability was also affected by the behavioural factors and by the other factors, but with highly non-linear responses. Whenever resources were limiting for the consumers because of low RGR, large individual body size or low AE, population density at the equilibrium was directly related to the patch departure behaviour; on the other hand, optimal patch departure behaviour, which maximised the net energy intake at the individual level, had a negative influence on population stability whenever resource availability was high for the consumers. The consumer growth rate (r) and numerical dynamics, as well as the spatial and temporal fluctuations of resource density, which were the proximate causes of population stability or instability, were affected by the behavioural factor as strongly or even more strongly than by the others factors considered here. Therefore, patch departure behaviour can act as a feedback control of individual energetics, allowing consumers to optimise a potential trade-off between short-term individual fitness

  19. Stochastic population oscillations in spatial predator-prey models

    Energy Technology Data Exchange (ETDEWEB)

    Taeuber, Uwe C, E-mail: tauber@vt.edu [Department of Physics, Virginia Tech, Blacksburg, VA 24061-0435 (United States)

    2011-09-15

    It is well-established that including spatial structure and stochastic noise in models for predator-prey interactions invalidates the classical deterministic Lotka-Volterra picture of neutral population cycles. In contrast, stochastic models yield long-lived, but ultimately decaying erratic population oscillations, which can be understood through a resonant amplification mechanism for density fluctuations. In Monte Carlo simulations of spatial stochastic predator-prey systems, one observes striking complex spatio-temporal structures. These spreading activity fronts induce persistent correlations between predators and prey. In the presence of local particle density restrictions (finite prey carrying capacity), there exists an extinction threshold for the predator population. The accompanying continuous non-equilibrium phase transition is governed by the directed-percolation universality class. We employ field-theoretic methods based on the Doi-Peliti representation of the master equation for stochastic particle interaction models to (i) map the ensuing action in the vicinity of the absorbing state phase transition to Reggeon field theory, and (ii) to quantitatively address fluctuation-induced renormalizations of the population oscillation frequency, damping, and diffusion coefficients in the species coexistence phase.

  20. The effects of spatial population dataset choice on estimates of population at risk of disease

    Directory of Open Access Journals (Sweden)

    Gething Peter W

    2011-02-01

    Full Text Available Abstract Background The spatial modeling of infectious disease distributions and dynamics is increasingly being undertaken for health services planning and disease control monitoring, implementation, and evaluation. Where risks are heterogeneous in space or dependent on person-to-person transmission, spatial data on human population distributions are required to estimate infectious disease risks, burdens, and dynamics. Several different modeled human population distribution datasets are available and widely used, but the disparities among them and the implications for enumerating disease burdens and populations at risk have not been considered systematically. Here, we quantify some of these effects using global estimates of populations at risk (PAR of P. falciparum malaria as an example. Methods The recent construction of a global map of P. falciparum malaria endemicity enabled the testing of different gridded population datasets for providing estimates of PAR by endemicity class. The estimated population numbers within each class were calculated for each country using four different global gridded human population datasets: GRUMP (~1 km spatial resolution, LandScan (~1 km, UNEP Global Population Databases (~5 km, and GPW3 (~5 km. More detailed assessments of PAR variation and accuracy were conducted for three African countries where census data were available at a higher administrative-unit level than used by any of the four gridded population datasets. Results The estimates of PAR based on the datasets varied by more than 10 million people for some countries, even accounting for the fact that estimates of population totals made by different agencies are used to correct national totals in these datasets and can vary by more than 5% for many low-income countries. In many cases, these variations in PAR estimates comprised more than 10% of the total national population. The detailed country-level assessments suggested that none of the datasets was

  1. Large-scale degradation of Amazonian freshwater ecosystems.

    Science.gov (United States)

    Castello, Leandro; Macedo, Marcia N

    2016-03-01

    Hydrological connectivity regulates the structure and function of Amazonian freshwater ecosystems and the provisioning of services that sustain local populations. This connectivity is increasingly being disrupted by the construction of dams, mining, land-cover changes, and global climate change. This review analyzes these drivers of degradation, evaluates their impacts on hydrological connectivity, and identifies policy deficiencies that hinder freshwater ecosystem protection. There are 154 large hydroelectric dams in operation today, and 21 dams under construction. The current trajectory of dam construction will leave only three free-flowing tributaries in the next few decades if all 277 planned dams are completed. Land-cover changes driven by mining, dam and road construction, agriculture and cattle ranching have already affected ~20% of the Basin and up to ~50% of riparian forests in some regions. Global climate change will likely exacerbate these impacts by creating warmer and dryer conditions, with less predictable rainfall and more extreme events (e.g., droughts and floods). The resulting hydrological alterations are rapidly degrading freshwater ecosystems, both independently and via complex feedbacks and synergistic interactions. The ecosystem impacts include biodiversity loss, warmer stream temperatures, stronger and more frequent floodplain fires, and changes to biogeochemical cycles, transport of organic and inorganic materials, and freshwater community structure and function. The impacts also include reductions in water quality, fish yields, and availability of water for navigation, power generation, and human use. This degradation of Amazonian freshwater ecosystems cannot be curbed presently because existing policies are inconsistent across the Basin, ignore cumulative effects, and overlook the hydrological connectivity of freshwater ecosystems. Maintaining the integrity of these freshwater ecosystems requires a basinwide research and policy framework

  2. Hierarchical spatial capture-recapture models: Modeling population density from stratified populations

    Science.gov (United States)

    Royle, J. Andrew; Converse, Sarah J.

    2014-01-01

    Capture–recapture studies are often conducted on populations that are stratified by space, time or other factors. In this paper, we develop a Bayesian spatial capture–recapture (SCR) modelling framework for stratified populations – when sampling occurs within multiple distinct spatial and temporal strata.We describe a hierarchical model that integrates distinct models for both the spatial encounter history data from capture–recapture sampling, and also for modelling variation in density among strata. We use an implementation of data augmentation to parameterize the model in terms of a latent categorical stratum or group membership variable, which provides a convenient implementation in popular BUGS software packages.We provide an example application to an experimental study involving small-mammal sampling on multiple trapping grids over multiple years, where the main interest is in modelling a treatment effect on population density among the trapping grids.Many capture–recapture studies involve some aspect of spatial or temporal replication that requires some attention to modelling variation among groups or strata. We propose a hierarchical model that allows explicit modelling of group or strata effects. Because the model is formulated for individual encounter histories and is easily implemented in the BUGS language and other free software, it also provides a general framework for modelling individual effects, such as are present in SCR models.

  3. Climate science: The resilience of Amazonian forests

    Science.gov (United States)

    Bush, Mark B.

    2017-01-01

    Isotope evidence suggests that, during dry periods associated with the most recent ice age, the Amazonian forest survived in a region that is sensitive to rainfall changes -- settling a debate about Amazonian aridity. See Letter p.204

  4. Estimating the global conservation status of more than 15,000 Amazonian tree species

    DEFF Research Database (Denmark)

    ter Steege, Hans; Pitman, Nigel C. A.; Killeen, Timothy J.

    2015-01-01

    Estimates of extinction risk for Amazonian plant and animal species are rare and not often incorporated into land-use policy and conservation planning. We overlay spatial distribution models with historical and projected deforestation to show that at least 36% and up to 57% of all Amazonian tree...... degradation, highlighting the key roles that protected areas, indigenous peoples, and improved governance can play in preventing large-scale extinctions in the tropics in this century....

  5. Ising-like patterns of spatial synchrony in population biology

    Science.gov (United States)

    Noble, Andrew; Hastings, Alan; Machta, Jon

    2014-03-01

    Systems of coupled dynamical oscillators can undergo a phase transition between synchronous and asynchronous phases. In the case of coupled map lattices, the spontaneous symmetry breaking of a temporal-phase order parameter is known to exhibit Ising-like critical behavior. Here, we investigate a noisy coupled map motivated by the study of spatial synchrony in ecological populations far from the extinction threshold. Ising-like patterns of criticality, as well as spinodal decomposition and homogeneous nucleation, emerge from the nonlinear interactions of environmental fluctuations in habitat quality, local density-dependence in reproduction, and dispersal. In the mean-field limit, the correspondence to the Ising model is exact: the fixed points of our dynamical system are given by the equation of state for Weiss mean-field theory under an appropriate mapping of parameters. We have strong evidence that a quantitative correspondence persists, both near and far from the critical point, in the presence of fluctuations. Our results provide a formal connection between equilibrium statistical physics and population biology. This work is supported by the National Science Foundation under Grant No. 1344187.

  6. The Amazonian Formative: Crop Domestication and Anthropogenic Soils

    Directory of Open Access Journals (Sweden)

    Manuel Arroyo-Kalin

    2010-03-01

    Full Text Available The emergence of sedentism and agriculture in Amazonia continues to sit uncomfortably within accounts of South American pre-Columbian history. This is partially because deep-seated models were formulated when only ceramic evidence was known, partly because newer data continue to defy simple explanations, and partially because many discussions continue to ignore evidence of pre-Columbian anthropogenic landscape transformations. This paper presents the results of recent geoarchaeological research on Amazonian anthropogenic soils. It advances the argument that properties of two different types of soils, terras pretas and terras mulatas, support their interpretation as correlates of, respectively, past settlement areas and fields where spatially-intensive, organic amendment-reliant cultivation took place. This assessment identifies anthropogenic soil formation as a hallmark of the Amazonian Formative and prompts questions about when similar forms of enrichment first appear in the Amazon basin. The paper reviews evidence for embryonic anthrosol formation to highlight its significance for understanding the domestication of a key Amazonian crop: manioc (Manihot esculenta ssp. esculenta. A model for manioc domestication that incorporates anthropogenic soils outlines some scenarios which link the distribution of its two broader varieties—sweet and bitter manioc—with the widespread appearance of Amazonian anthropogenic dark earths during the first millennium AD.

  7. The discovery of the Amazonian tree flora with an updated checklist of all known tree taxa

    Science.gov (United States)

    Ter Steege, Hans; Vaessen, Rens W.; Cárdenas-López, Dairon; Sabatier, Daniel; Antonelli, Alexandre; de Oliveira, Sylvia Mota; Pitman, Nigel C. A.; Jørgensen, Peter Møller; Salomão, Rafael P.

    2016-07-01

    Amazonia is the most biodiverse rainforest on Earth, and the debate over how many tree species grow there remains contentious. Here we provide a checklist of all tree species collected to date, and describe spatial and temporal trends in data accumulation. We report 530,025 unique collections of trees in Amazonia, dating between 1707 and 2015, for a total of 11,676 species in 1225 genera and 140 families. These figures support recent estimates of 16,000 total Amazonian tree species based on ecological plot data from the Amazonian Tree Diversity Network. Botanical collection in Amazonia is characterized by three major peaks, centred around 1840, 1920, and 1980, which are associated with flora projects and the establishment of inventory plots. Most collections were made in the 20th century. The number of collections has increased exponentially, but shows a slowdown in the last two decades. We find that a species’ range size is a better predictor of the number of times it has been collected than the species’ estimated basin-wide population size. Finding, describing, and documenting the distribution of the remaining species will require coordinated efforts at under-collected sites.

  8. Spatial Changes and Population Movements on the Albanian Coastline

    Science.gov (United States)

    Kanjir, U.; Gregorič Bon, N.

    2016-06-01

    The last decade has seen a large increase in construction along the southern Albanian coastline, mainly in the rise of large tourist complexes comprising hotels, apartment houses, touristic villages, and so on. These constructions rarely follow urban planning and not only change its landscape but also often threaten the ecological value of the coastal zone. The uncontrolled and devastating construction along the coast has been accompanied by coastal erosion caused by the sea with the intensity up to 50 cm/year. This paper investigates the environmental change monitoring on the Albanian Riviera by analysing optical remote sensing data (Landsat 5 and 8) in the period between 1984 and 2015. The image analysis results grounded on the change vector analysis indicate coastal morphology changes and land cover changes in the coastal environment, which appear mostly due to erosion in river delta and urban growth. Apart from identifying both phenomena through time, the objective of this study is to show that these landscape changes in fact correlate with the population migration as well as to explain why and the extent to which Albania is one of the most migratory countries in Europe. Based on the multidisciplinary research, which combines anthropological method with spatial analysis, this presentation anticipates future changes in this area. It argues that movements of both people and in landscape formations strongly influence each other, constituting a closely corresponding relationship.

  9. A Comparison of Grizzly Bear Demographic Parameters Estimated from Non-Spatial and Spatial Open Population Capture-Recapture Models.

    Directory of Open Access Journals (Sweden)

    Jesse Whittington

    Full Text Available Capture-recapture studies are frequently used to monitor the status and trends of wildlife populations. Detection histories from individual animals are used to estimate probability of detection and abundance or density. The accuracy of abundance and density estimates depends on the ability to model factors affecting detection probability. Non-spatial capture-recapture models have recently evolved into spatial capture-recapture models that directly include the effect of distances between an animal's home range centre and trap locations on detection probability. Most studies comparing non-spatial and spatial capture-recapture biases focussed on single year models and no studies have compared the accuracy of demographic parameter estimates from open population models. We applied open population non-spatial and spatial capture-recapture models to three years of grizzly bear DNA-based data from Banff National Park and simulated data sets. The two models produced similar estimates of grizzly bear apparent survival, per capita recruitment, and population growth rates but the spatial capture-recapture models had better fit. Simulations showed that spatial capture-recapture models produced more accurate parameter estimates with better credible interval coverage than non-spatial capture-recapture models. Non-spatial capture-recapture models produced negatively biased estimates of apparent survival and positively biased estimates of per capita recruitment. The spatial capture-recapture grizzly bear population growth rates and 95% highest posterior density averaged across the three years were 0.925 (0.786-1.071 for females, 0.844 (0.703-0.975 for males, and 0.882 (0.779-0.981 for females and males combined. The non-spatial capture-recapture population growth rates were 0.894 (0.758-1.024 for females, 0.825 (0.700-0.948 for males, and 0.863 (0.771-0.957 for both sexes. The combination of low densities, low reproductive rates, and predominantly negative

  10. A Comparison of Grizzly Bear Demographic Parameters Estimated from Non-Spatial and Spatial Open Population Capture-Recapture Models.

    Science.gov (United States)

    Whittington, Jesse; Sawaya, Michael A

    2015-01-01

    Capture-recapture studies are frequently used to monitor the status and trends of wildlife populations. Detection histories from individual animals are used to estimate probability of detection and abundance or density. The accuracy of abundance and density estimates depends on the ability to model factors affecting detection probability. Non-spatial capture-recapture models have recently evolved into spatial capture-recapture models that directly include the effect of distances between an animal's home range centre and trap locations on detection probability. Most studies comparing non-spatial and spatial capture-recapture biases focussed on single year models and no studies have compared the accuracy of demographic parameter estimates from open population models. We applied open population non-spatial and spatial capture-recapture models to three years of grizzly bear DNA-based data from Banff National Park and simulated data sets. The two models produced similar estimates of grizzly bear apparent survival, per capita recruitment, and population growth rates but the spatial capture-recapture models had better fit. Simulations showed that spatial capture-recapture models produced more accurate parameter estimates with better credible interval coverage than non-spatial capture-recapture models. Non-spatial capture-recapture models produced negatively biased estimates of apparent survival and positively biased estimates of per capita recruitment. The spatial capture-recapture grizzly bear population growth rates and 95% highest posterior density averaged across the three years were 0.925 (0.786-1.071) for females, 0.844 (0.703-0.975) for males, and 0.882 (0.779-0.981) for females and males combined. The non-spatial capture-recapture population growth rates were 0.894 (0.758-1.024) for females, 0.825 (0.700-0.948) for males, and 0.863 (0.771-0.957) for both sexes. The combination of low densities, low reproductive rates, and predominantly negative population growth

  11. Spatial organization of a reintroduced population of bobcats

    Science.gov (United States)

    Diefenbach, D.R.; Hansen, L.A.; Warren, R.J.; Conroy, M.J.

    2006-01-01

    The spacing patterns and mating systems of solitary carnivores have important implications for social behavior and for the survival and reproduction of individuals. Over 2 years, we reintroduced 32 (15 males and 17 females) bobcats (Lynx rufus) to a barrier island off the coast of Georgia and studied patterns of bobcat spatial distribution. Population density increased to 3.1 bobcats/10 km2. We found overlap of the home range for all females on the island increased during 1989-1991 such that, on average, each female shared a home-range area with the equivalent of >2 other females, and for core areas overlap was equivalent to sharing a core area with nearly 1 other female. Reproduction and home-range overlap were related inversely and food resources did not seem to be limiting. Our results were consistent with the land tenure concept in that the initial reintroduced bobcats established home ranges that changed little in size and location. However, bobcats resident on the island for ??? 1 year did not successfully exclude newcomers from their home ranges or core areas and no bobcats retained areas of exclusive use from conspecifics of the same sex. We suggest that the propensity of female bobcats to reproduce successfully may be related to their access to exclusive use areas even under conditions of adequate or good food availability. Under the conditions in this study (moderate bobcat density, adequate food availability, and limited dispersal) bobcats exhibited no evidence of an ability to exclude other adult individuals from their home ranges or core areas. ?? 2006 American Society of Mammalogists.

  12. Genetic Drift Suppresses Bacterial Conjugation in Spatially Structured Populations

    Science.gov (United States)

    Freese, Peter D.; Korolev, Kirill S.; Jiménez, José I.; Chen, Irene A.

    2014-02-01

    Conjugation is the primary mechanism of horizontal gene transfer that spreads antibiotic resistance among bacteria. Although conjugation normally occurs in surface-associated growth (e.g., biofilms), it has been traditionally studied in well-mixed liquid cultures lacking spatial structure, which is known to affect many evolutionary and ecological processes. Here we visualize spatial patterns of gene transfer mediated by F plasmid conjugation in a colony of Escherichia coli growing on solid agar, and we develop a quantitative understanding by spatial extension of traditional mass-action models. We found that spatial structure suppresses conjugation in surface-associated growth because strong genetic drift leads to spatial isolation of donor and recipient cells, restricting conjugation to rare boundaries between donor and recipient strains. These results suggest that ecological strategies, such as enforcement of spatial structure and enhancement of genetic drift, could complement molecular strategies in slowing the spread of antibiotic resistance genes.

  13. Geographic coupling of juvenile and adult habitat shapes spatial population dynamics of a coral reef fish

    NARCIS (Netherlands)

    Huijbers, C.M.; Nagelekerken, I.; Debrot, A.O.; Jongejans, E.

    2013-01-01

    Marine spatial population dynamics are often addressed with a focus on larval dispersal, without taking into account movement behavior of individuals in later life stages. Processes occurring during demersal life stages may also drive spatial population dynamics if habitat quality is perceived diffe

  14. The effect of static and dynamic spatially structured disturbances on a locally dispersing population.

    Science.gov (United States)

    Hiebeler, David E; Morin, Benjamin R

    2007-05-01

    Previous models of locally dispersing populations have shown that in the presence of spatially structured fixed habitat heterogeneity, increasing local spatial autocorrelation in habitat generally has a beneficial effect on such populations, increasing equilibrium population density. It has also been shown that with large-scale disturbance events which simultaneously affect contiguous blocks of sites, increasing spatial autocorrelation in the disturbances has a harmful effect, decreasing equilibrium population density. Here, spatial population models are developed which include both of these spatially structured exogenous influences, to determine how they interact with each other and with the endogenously generated spatial structure produced by the population dynamics. The models show that when habitat is fragmented and disturbance occurs at large spatial scales, the population cannot persist no matter how large its birth rate, an effect not seen in previous simpler models of this type. The behavior of the model is also explored when the local autocorrelation of habitat heterogeneity and disturbance events are equal, i.e. the two effects occur at the same spatial scale. When this scale parameter is very small, habitat fragmentation prevents the population from persisting because sites attempting to reproduce will drop most of their offspring on unsuitable sites; when the parameter is very large, large-scale disturbance events drive the population to extinction. Population levels reach their maximum at intermediate values of the scale parameter, and the critical values in the model show that the population will persist most easily at these intermediate scales of spatial influences. The models are investigated via spatially explicit stochastic simulations, traditional (infinite-dispersal) and improved (local-dispersal) mean-field approximations, and pair approximations.

  15. [Spatial structure analysis and distribution simulation of Therioaphis trifolii population based on geostatistics and GIS].

    Science.gov (United States)

    Zhang, Rong; Leng, Yun-fa; Zhu, Meng-meng; Wang, Fang

    2007-11-01

    Based on geographic information system and geostatistics, the spatial structure of Therioaphis trifolii population of different periods in Yuanzhou district of Guyuan City, the southern Ningxia Province, was analyzed. The spatial distribution of Therioaphis trifolii population was also simulated by ordinary Kriging interpretation. The results showed that Therioaphis trifolii population of different periods was correlated spatially in the study area. The semivariograms of Therioaphis trifolii could be described by exponential model, indicating an aggregated spatial arrangement. The spatial variance varied from 34.13%-48.77%, and the range varied from 8.751-12.049 km. The degree and direction of aggregation showed that the trend was increased gradually from southwest to northeast. The dynamic change of Therioaphis trifolii population in different periods could be analyzed intuitively on the simulated maps of the spatial distribution from the two aspects of time and space, The occurrence position and degree of Therioaphis trifolii to a state of certain time could be determined easily.

  16. Morphological-developmental properties as an agent forming spatial structure of Adonis vernalis (L. populations

    Directory of Open Access Journals (Sweden)

    Małgorzata Jankowska-Błaszczuk

    2014-01-01

    Full Text Available Aggregated and group-aggregated spatial structure of two Adonis vernalis (L. populations in xerothermic grasslands are presented. It has been found that different disturbances (grazing, fire, which affect each population, modify morphological properties and developmental potential of individuals. This is followed by differentation in spatial and age structure of both populations. Comparative analysis of above- and below-ground plant organs of Adonis vernalis has enabled to present hierarchical spatial structure of aggregations and clumps as a result of modular structure of individuals and populations.

  17. A spatial ecosystem and populations dynamics model (SEAPODYM) Modeling of tuna and tuna-like populations

    Science.gov (United States)

    Lehodey, Patrick; Senina, Inna; Murtugudde, Raghu

    2008-09-01

    An enhanced version of the spatial ecosystem and population dynamics model SEAPODYM is presented to describe spatial dynamics of tuna and tuna-like species in the Pacific Ocean at monthly resolution over 1° grid-boxes. The simulations are driven by a bio-physical environment predicted from a coupled ocean physical-biogeochemical model. This new version of SEAPODYM includes expanded definitions of habitat indices, movements, and natural mortality based on empirical evidences. A thermal habitat of tuna species is derived from an individual heat budget model. The feeding habitat is computed according to the accessibility of tuna predator cohorts to different vertically migrating and non-migrating micronekton (mid-trophic) functional groups. The spawning habitat is based on temperature and the coincidence of spawning fish with presence or absence of predators and food for larvae. The successful larval recruitment is linked to spawning stock biomass. Larvae drift with currents, while immature and adult tuna can move of their own volition, in addition to being advected by currents. A food requirement index is computed to adjust locally the natural mortality of cohorts based on food demand and accessibility to available forage components. Together these mechanisms induce bottom-up and top-down effects, and intra- (i.e. between cohorts) and inter-species interactions. The model is now fully operational for running multi-species, multi-fisheries simulations, and the structure of the model allows a validation from multiple data sources. An application with two tuna species showing different biological characteristics, skipjack ( Katsuwonus pelamis) and bigeye ( Thunnus obesus), is presented to illustrate the capacity of the model to capture many important features of spatial dynamics of these two different tuna species in the Pacific Ocean. The actual validation is presented in a companion paper describing the approach to have a rigorous mathematical parameter optimization

  18. Pair and triplet approximation of a spatial lattice population model with multiscale dispersal using Markov chains for estimating spatial autocorrelation.

    Science.gov (United States)

    Hiebeler, David E; Millett, Nicholas E

    2011-06-21

    We investigate a spatial lattice model of a population employing dispersal to nearest and second-nearest neighbors, as well as long-distance dispersal across the landscape. The model is studied via stochastic spatial simulations, ordinary pair approximation, and triplet approximation. The latter method, which uses the probabilities of state configurations of contiguous blocks of three sites as its state variables, is demonstrated to be greatly superior to pair approximations for estimating spatial correlation information at various scales. Correlations between pairs of sites separated by arbitrary distances are estimated by constructing spatial Markov processes using the information from both approximations. These correlations demonstrate why pair approximation misses basic qualitative features of the model, such as decreasing population density as a large proportion of offspring are dropped on second-nearest neighbors, and why triplet approximation is able to include them. Analytical and numerical results show that, excluding long-distance dispersal, the initial growth rate of an invading population is maximized and the equilibrium population density is also roughly maximized when the population spreads its offspring evenly over nearest and second-nearest neighboring sites.

  19. Geostatistics for spatial genetic structures: study of wild populations of perennial ryegrass.

    Science.gov (United States)

    Monestiez, P; Goulard, M; Charmet, G

    1994-04-01

    Methods based on geostatistics were applied to quantitative traits of agricultural interest measured on a collection of 547 wild populations of perennial ryegrass in France. The mathematical background of these methods, which resembles spatial autocorrelation analysis, is briefly described. When a single variable is studied, the spatial structure analysis is similar to spatial autocorrelation analysis, and a spatial prediction method, called "kriging", gives a filtered map of the spatial pattern over all the sampled area. When complex interactions of agronomic traits with different evaluation sites define a multivariate structure for the spatial analysis, geostatistical methods allow the spatial variations to be broken down into two main spatial structures with ranges of 120 km and 300 km, respectively. The predicted maps that corresponded to each range were interpreted as a result of the isolation-by-distance model and as a consequence of selection by environmental factors. Practical collecting methodology for breeders may be derived from such spatial structures.

  20. Study on Simulating Spatial Distribution and Varying Patterns of Urumqi's Population

    Institute of Scientific and Technical Information of China (English)

    Chen Xuegang; Yang Zhaoping; Zhang Xiaolei

    2007-01-01

    In this paper,an approach to simulate the spatial distribution of urban population is proposed using urban land use and population statistical data through the geographical information systems(GIS).Then,the spatial population distribution of Urumqi as a case is simulated by the approach mentioned above and its varying patterns are analyzed by the raster population surface.As a result,producing raster population surface is more accurate and natural than the traditional choropleth map of population density.Concerning the spatial population distribution of Urumqi,the population density declines from south to north and the population distribution mainly presents"T-type",the population distribution presents multi-centre agglomeration and the population distribution of the districts shows different features.The population density varies significantly with the incmase in the distance from central business district(CBD).Finally,it is found in this paper that the development history of districts,terrain and traffic road are main factors that have an influence Urumqi's population distribution.This paper tries to provide more accurate population data for the plan and management of urban land,traffic and public facilities in order to enrich the researches on urban population distribution.

  1. Spatially explicit global population scenarios consistent with the Shared Socioeconomic Pathways

    Science.gov (United States)

    Jones, B.; O'Neill, B. C.

    2016-08-01

    The projected size and spatial distribution of the future population are important drivers of global change and key determinants of exposure and vulnerability to hazards. Spatial demographic projections are widely used as inputs to spatial projections of land use, energy use, and emissions, as well as to assessments of the impacts of extreme events, sea level rise, and other climate-related outcomes. To date, however, there are very few global-scale, spatially explicit population projections, and those that do exist are often based on simple scaling or trend extrapolation. Here we present a new set of global, spatially explicit population scenarios that are consistent with the new Shared Socioeconomic Pathways (SSPs) developed to facilitate global change research. We use a parameterized gravity-based downscaling model to produce projections of spatial population change that are quantitatively consistent with national population and urbanization projections for the SSPs and qualitatively consistent with assumptions in the SSP narratives regarding spatial development patterns. We show that the five SSPs lead to substantially different spatial population outcomes at the continental, national, and sub-national scale. In general, grid cell-level outcomes are most influenced by national-level population change, second by urbanization rate, and third by assumptions about the spatial style of development. However, the relative importance of these factors is a function of the magnitude of the projected change in total population and urbanization for each country and across SSPs. We also demonstrate variation in outcomes considering the example of population existing in a low-elevation coastal zone under alternative scenarios.

  2. Mercury exposure, serum antinuclear/antinucleolar antibodies, and serum cytokine levels in mining populations in Amazonian Brazil: a cross-sectional study.

    Science.gov (United States)

    Gardner, Renee M; Nyland, Jennifer F; Silva, Ines A; Ventura, Ana Maria; de Souza, Jose Maria; Silbergeld, Ellen K

    2010-05-01

    Mercury is an immunotoxic substance that has been shown to induce autoimmune disease in rodent models, characterized by lymphoproliferation, overproduction of immunoglobulin (IgG and IgE), and high circulating levels of auto-antibodies directed at antigens located in the nucleus (antinuclear auto-antibodies, or ANA) or the nucleolus (antinucleolar auto-antibodies, or ANoA). We have reported elevated levels of ANA and ANoA in human populations exposed to mercury in artisanal gold mining, though other confounding variables that may also modulate ANA/ANoA levels were not well controlled. The goal of this study is to specifically test whether occupational and environmental conditions (other than mercury exposure) that are associated with artisanal gold mining affect the prevalence of markers of autoimmune dysfunction. We measured ANA, ANoA, and cytokine concentrations in serum and compared results from mercury-exposed artisanal gold miners to those from diamond and emerald miners working under similar conditions and with similar socio-economic status and risks of infectious disease. Mercury-exposed gold miners had higher prevalence of detectable ANA and ANoA and higher titers of ANA and ANoA as compared to diamond and emerald miners with no occupational mercury exposure. Also, mercury-exposed gold miners with detectable ANA or ANoA in serum had significantly higher concentrations of pro-inflammatory cytokines IL-1beta, TNF-alpha, and IFN-gamma in serum as compared to the diamond and emerald miners. This study provides further evidence that mercury exposure may lead to autoimmune dysfunction and systemic inflammation in affected populations.

  3. [Responses of spatial distribution pattern of Artemisia ordosica population to the precipitation gradient on Ordos Plateau].

    Science.gov (United States)

    Li, Qiu-shuang; Zhang, Chao; Wang, Fei; Lai, Li-ming; Zhang, Li; Li, Wen-ting; Bai, Hua; Zheng, Yuan-run

    2009-09-01

    Five sites along the precipitation gradient (336-249 mm x a(-1)) from east to west in Ordos Plateau were selected to study the spatial distribution pattern of Artemisia ordosica population and its responses to the precipitation gradient by the methods of variance mean ratio, aggregative index, and point pattern analysis. The reduction of precipitation affected the spatial distribution pattern of A. ordosica population significantly. With decreasing precipitation gradient, the spatial pattern of A. ordosica population changed from uniform to random in small scale, and from random to clumpy in large scale, suggesting that in the ecological restoration of Ordos Plateau, a rational arrangement of A. ordosica should be made.

  4. Skeeter Buster: a stochastic, spatially explicit modeling tool for studying Aedes aegypti population replacement and population suppression strategies.

    Directory of Open Access Journals (Sweden)

    Krisztian Magori

    Full Text Available BACKGROUND: Dengue is the most important mosquito-borne viral disease affecting humans. The only prevention measure currently available is the control of its vectors, primarily Aedes aegypti. Recent advances in genetic engineering have opened the possibility for a new range of control strategies based on genetically modified mosquitoes. Assessing the potential efficacy of genetic (and conventional strategies requires the availability of modeling tools that accurately describe the dynamics and genetics of Ae. aegypti populations. METHODOLOGY/PRINCIPAL FINDINGS: We describe in this paper a new modeling tool of Ae. aegypti population dynamics and genetics named Skeeter Buster. This model operates at the scale of individual water-filled containers for immature stages and individual properties (houses for adults. The biology of cohorts of mosquitoes is modeled based on the algorithms used in the non-spatial Container Inhabiting Mosquitoes Simulation Model (CIMSiM. Additional features incorporated into Skeeter Buster include stochasticity, spatial structure and detailed population genetics. We observe that the stochastic modeling of individual containers in Skeeter Buster is associated with a strongly reduced temporal variation in stage-specific population densities. We show that heterogeneity in container composition of individual properties has a major impact on spatial heterogeneity in population density between properties. We detail how adult dispersal reduces this spatial heterogeneity. Finally, we present the predicted genetic structure of the population by calculating F(ST values and isolation by distance patterns, and examine the effects of adult dispersal and container movement between properties. CONCLUSIONS/SIGNIFICANCE: We demonstrate that the incorporated stochasticity and level of spatial detail have major impacts on the simulated population dynamics, which could potentially impact predictions in terms of control measures. The capacity

  5. DEMOGRAPHY AND SPATIAL POPULATION STRUCTURE IN CALIFORNIA TIGER SALAMANDER

    Science.gov (United States)

    Although the causes of many amphibian declines remain mysterious, there is general agreement that human habitat alteration represents the greatest threat to amphibian populations. In January 2000 the US Fish and Wildlife Service proposed listing Santa Barbara County California Ti...

  6. Hyperdominance in Amazonian forest carbon cycling

    NARCIS (Netherlands)

    Fauset, S.; Arets, E.J.M.M.; Steege, ter H.; Pena Claros, M.; Poorter, L.; Levis, C.; Toledo, M.

    2015-01-01

    While Amazonian forests are extraordinarily diverse, the abundance of trees is skewed strongly towards relatively few ‘hyperdominant’ species. In addition to their diversity, Amazonian trees are a key component of the global carbon cycle, assimilating and storing more carbon than any other ecosystem

  7. Explaining spatial heterogeneity in population dynamics and genetics from spatial variation in resources for a large herbivore.

    Science.gov (United States)

    Contasti, Adrienne L; Tissier, Emily J; Johnstone, Jill F; McLoughlin, Philip D

    2012-01-01

    Fine-scale spatial variation in genetic relatedness and inbreeding occur across continuous distributions of several populations of vertebrates; however, the basis of observed variation is often left untested. Here we test the hypothesis that prior observations of spatial patterns in genetics for an island population of feral horses (Sable Island, Canada) were the result of spatial variation in population dynamics, itself based in spatial heterogeneity in underlying habitat quality. In order to assess how genetic and population structuring related to habitat, we used hierarchical cluster analysis of water sources and an indicator analysis of the availability of important forage species to identify a longitudinal gradient in habitat quality along the length of Sable Island. We quantify a west-east gradient in access to fresh water and availability of two important food species to horses: sandwort, Honckenya peploides, and beach pea, Lathyrus japonicas. Accordingly, the population clusters into three groups that occupy different island segments (west, central, and east) that vary markedly in their local dynamics. Density, body condition, and survival and reproduction of adult females were highest in the west, followed by central and east areas. These results mirror a previous analysis of genetics, which showed that inbreeding levels are highest in the west (with outbreeding in the east), and that there are significant differences in fixation indices among groups of horses along the length of Sable Island. Our results suggest that inbreeding depression is not an important limiting factor to the horse population. We conclude that where habitat gradients exist, we can anticipate fine-scale heterogeneity in population dynamics and hence genetics.

  8. Determinants of linear growth from infancy to school-aged years: a population-based follow-up study in urban Amazonian children

    Directory of Open Access Journals (Sweden)

    Lourenço Barbara H

    2012-06-01

    Full Text Available Abstract Background Although linear growth during childhood may be affected by early-life exposures, few studies have examined whether the effects of these exposures linger on during school age, particularly in low- and middle-income countries. Methods We conducted a population-based longitudinal study of 256 children living in the Brazilian Amazon, aged 0.1 y to 5.5 y in 2003. Data regarding socioeconomic and maternal characteristics, infant feeding practices, morbidities, and birth weight and length were collected at baseline of the study (2003. Child body length/height was measured at baseline and at follow-up visits (in 2007 and 2009. Restricted cubic splines were used to construct average height-for-age Z score (HAZ growth curves, yielding estimated HAZ differences among exposure categories at ages 0.5 y, 1 y, 2 y, 5 y, 7 y, and 10 y. Results At baseline, median age was 2.6 y (interquartile range, 1.4 y–3.8 y, and mean HAZ was −0.53 (standard deviation, 1.15; 10.2% of children were stunted. In multivariable analysis, children in households above the household wealth index median were 0.30 Z taller at age 5 y (P = 0.017, and children whose families owned land were 0.34 Z taller by age 10 y (P = 0.023, when compared with poorer children. Mothers in the highest tertile for height had children whose HAZ were significantly higher compared with those of children from mothers in the lowest height tertile at all ages. Birth weight and length were positively related to linear growth throughout childhood; by age 10 y, children weighing >3500 g at birth were 0.31 Z taller than those weighing 2501 g to 3500 g (P = 0.022 at birth, and children measuring ≥51 cm at birth were 0.51 Z taller than those measuring ≤48 cm (P = 0.005. Conclusions Results suggest socioeconomic background is a potentially modifiable predictor of linear growth during the school-aged years. Maternal height and child’s anthropometric characteristics at

  9. Game depletion hypothesis of amazonian adaptation: data from a native community.

    Science.gov (United States)

    Vickers, W T

    1988-03-25

    The low population densities and impermanent settlements of Amazonian Indians are often interpreted as adaptations to a fauna that offers limited protein resources and is rapidly depleted by hunting. Data spanning the 10-year life cycle of one northwestern Amazonian settlement show that variations in hunt yields result from temporal variations in peccary (Tayassu pecari and T. tajacu) kills that appear extrinsic to native population size. After 10 years, hunting success remained high and the kill rates for most prey did not suggest depletion. An array of environmental factors accounts for the incipient settlement relocation observed.

  10. Modelling the loss of genetic diversity in vole populations in a spatially and temporally varying environment

    DEFF Research Database (Denmark)

    Topping, Christopher John; Østergaard, Siri; Pertoldi, Cino

    2003-01-01

    to habitat availability and their influence on vole behaviour. Interaction between spatial and temporal dynamics altered the ratio of effective population size to census size. This indicates an altered reproductive potential, crucial in conservation biology applications. However, when the loss...... a genetically explicit individual-based model (IBM) coupled to a dynamic landscape model was used to obtain measures for the genetic status of simulated vole populations. The rate of loss of expected heterozygosity (He) was calculated for simulated populations using two levels of spatial and temporal...... heterogeneity. Results showed that both spatial and temporal heterogeneity exerted an influence on the rate of loss of genetic diversity, but the precise effect was a balance between the effects of population sub-structuring, the frequency of founder effects and population size. These were in turn related...

  11. Modeling complex spatial dynamics of two-population interaction in urbanization process

    CERN Document Server

    Chen, Yanguang

    2013-01-01

    This paper is mainly devoted to lay an empirical foundation for further research on complex spatial dynamics of two-population interaction. Based on the US population census data, a rural and urban population interaction model is developed. Subsequently a logistic equation on percentage urban is derived from the urbanization model so that spatial interaction can be connected mathematically with logistic growth. The numerical experiment by using the discretized urban-rural population interaction model of urbanization shows a period-doubling bifurcation and chaotic behavior, which is identical in patterns to those from the simple mathematical models of logistic growth in ecology. This suggests that the complicated dynamics of logistic growth may come from some kind of the nonlinear interaction. The results from this study help to understand urbanization, urban-rural population interaction, chaotic dynamics, and spatial complexity of geographical systems.

  12. SPATIALIZATION MODEL OF POPULATION BASED ON DATASET OF LAND USE AND LAND COVER CHANGE IN CHINA

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The spatialization of population of counties in China is significant. Firstly, we can gain the estimated values of population density adaptive to different kinds of regions. Secondly, we can integrate effectively population data with other data including natural resources, environment, society and economy, build 1km GRIDs of natural resources reserves per person, population density and other economic and environmental data, which are necessary to the national management and macro adjustment and control of natural resources and dynamic monitoring of population. In order to establish population information system serving national decision-making, three steps ought to be followed:1) establishing complete geographical spatial data foundation infrastructure including the establishment of electric map of residence with high resolution using topographical map with large scale and high resolution satellite remote sensing data, the determination of attribute information of housing and office buildings, and creating complete set of attribute database and rapid data updating; 2) establishing complete census systems including improving the transformation efficiency from census data to digital database and strengthening the link of census database and geographical spatial database, meanwhile, the government should attach great importance to the establishment and integration of population migration database; 3) considering there is no GIS software specially serving the analysis and management of population data, a practical approach is to add special modules to present software system, which works as a bridge actualizing the digitization and spatialization of population geography research.

  13. Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations

    DEFF Research Database (Denmark)

    Norman, Anita J; Strønen, Astrid Vik; Fuglstad, Geir-Arne;

    2017-01-01

    Context Methods for detecting contemporary, fine-scale population genetic structure in continuous populations are scarce. Yet such methods are vital for ecological and conservation studies, particularly under a changing landscape. Objectives Here we present a novel, spatially explicit method that...

  14. CALIFA across the Hubble types: Spatially resolved properties of the stellar populations

    CERN Document Server

    Delgado, R M González; Pérez, E; Fernandes, R Cid; de Amorim, A L; Cortijo-Ferrero, C; Lacerda, E A D; Fernández, R López; Sánchez, S F; Asari, N Vale

    2014-01-01

    We analyze the spatially resolved star formation history of 300 nearby galaxies from the CALIFA integral field spectroscopic survey to investigate the radial structure and gradients of the present day stellar populations properties as a function of Hubble type and galaxy stellar mass. A fossil record method based on spectral synthesis techniques is used to recover spatially and temporally resolved maps of stellar population properties of spheroidal and spiral galaxies with masses $10^9$ to $7 \\times 10^{11}$ M$_\\odot$. The results show that galaxy-wide spatially averaged stellar population properties (stellar mass, mass surface density, age, metallicity, and extinction) match those obtained from the integrated spectrum, and that these spatially averaged properties match those at $R = 1$ HLR (half light radius), proving that the effective radii are really effective. Further, the individual radial profiles of the stellar mass surface density ($\\mu_\\star$), luminosity weighted ages ($_L$), and mass weighted meta...

  15. Low plant density enhances gene dispersal in the Amazonian understory herb Heliconia acuminata.

    Science.gov (United States)

    Côrtes, Marina C; Uriarte, María; Lemes, Maristerra R; Gribel, Rogério; Kress, W John; Smouse, Peter E; Bruna, Emilio M

    2013-11-01

    In theory, conservation genetics predicts that forest fragmentation will reduce gene dispersal, but in practice, genetic and ecological processes are also dependent on other population characteristics. We used Bayesian genetic analyses to characterize parentage and propagule dispersal in Heliconia acuminata L. C. Richard (Heliconiaceae), a common Amazonian understory plant that is pollinated and dispersed by birds. We studied these processes in two continuous forest sites and three 1-ha fragments in Brazil's Biological Dynamics of Forest Fragments Project. These sites showed variation in the density of H. acuminata. Ten microsatellite markers were used to genotype flowering adults and seedling recruits and to quantify realized pollen and seed dispersal distances, immigration of propagules from outside populations, and reproductive dominance among parents. We tested whether gene dispersal is more dependent on fragmentation or density of reproductive plants. Low plant densities were associated with elevated immigration rates and greater propagule dispersal distances. Reproductive dominance among inside-plot parents was higher for low-density than for high-density populations. Elevated local flower and fruit availability is probably leading to spatially more proximal bird foraging and propagule dispersal in areas with high density of reproductive plants. Nevertheless, genetic diversity, inbreeding coefficients and fine-scale spatial genetic structure were similar across populations, despite differences in gene dispersal. This result may indicate that the opposing processes of longer dispersal events in low-density populations vs. higher diversity of contributing parents in high-density populations balance the resulting genetic outcomes and prevent genetic erosion in small populations and fragments.

  16. Spatial and spatiotemporal variation in metapopulation structure affects population dynamics in a passively dispersing arthropod.

    Science.gov (United States)

    De Roissart, Annelies; Wang, Shaopeng; Bonte, Dries

    2015-11-01

    The spatial and temporal variation in the availability of suitable habitat within metapopulations determines colonization-extinction events, regulates local population sizes and eventually affects local population and metapopulation stability. Insights into the impact of such a spatiotemporal variation on the local population and metapopulation dynamics are principally derived from classical metapopulation theory and have not been experimentally validated. By manipulating spatial structure in artificial metapopulations of the spider mite Tetranychus urticae, we test to which degree spatial (mainland-island metapopulations) and spatiotemporal variation (classical metapopulations) in habitat availability affects the dynamics of the metapopulations relative to systems where habitat is constantly available in time and space (patchy metapopulations). Our experiment demonstrates that (i) spatial variation in habitat availability decreases variance in metapopulation size and decreases density-dependent dispersal at the metapopulation level, while (ii) spatiotemporal variation in habitat availability increases patch extinction rates, decreases local population and metapopulation sizes and decreases density dependence in population growth rates. We found dispersal to be negatively density dependent and overall low in the spatial variable mainland-island metapopulation. This demographic variation subsequently impacts local and regional population dynamics and determines patterns of metapopulation stability. Both local and metapopulation-level variabilities are minimized in mainland-island metapopulations relative to classical and patchy ones.

  17. Genetic structure, spatial organization, and dispersal in two populations of bat-eared foxes

    OpenAIRE

    Kamler, Jan F.; Gray, Melissa M; Oh, Annie; Macdonald, David W.

    2013-01-01

    We incorporated radio-telemetry data with genetic analysis of bat-eared foxes (Otocyon megalotis) from individuals in 32 different groups to examine relatedness and spatial organization in two populations in South Africa that differed in density, home-range sizes, and group sizes. Kin clustering occurred only for female dyads in the high-density population. Relatedness was negatively correlated with distance only for female dyads in the high-density population, and for male and mixed-sex dyad...

  18. An Analysis on the Spatial Distribution of Population Aging Pressure in China

    Institute of Scientific and Technical Information of China (English)

    YangWangzhou; Dong Suocheng; Wu Youde; Luo Renbo

    2012-01-01

    Based on comprehensive analysis of the impact of population aging to social and economic development, a comprehensive evaluation system including 18 indexes was constructed for evaluating regional pressure of population aging on social and economic development. Using statistics data of 31 regions in Chi- na from 2004 to 2008, the pressure of population aging on social and economic development, was comprehensively evaluated by using the factor analysis method. The spatial distribution of popu- lation aging in China was also analyzed. This study is to provide scientific basis for government to make strategies of coping with population aging according to regional pressure of population ag- ing on social and economic development in China.

  19. Spatial population expansion promotes the evolution of cooperation in an experimental Prisoner's Dilemma.

    Science.gov (United States)

    Van Dyken, J David; Müller, Melanie J I; Mack, Keenan M L; Desai, Michael M

    2013-05-20

    Cooperation is ubiquitous in nature, but explaining its existence remains a central interdisciplinary challenge. Cooperation is most difficult to explain in the Prisoner's Dilemma game, where cooperators always lose in direct competition with defectors despite increasing mean fitness. Here we demonstrate how spatial population expansion, a widespread natural phenomenon, promotes the evolution of cooperation. We engineer an experimental Prisoner's Dilemma game in the budding yeast Saccharomyces cerevisiae to show that, despite losing to defectors in nonexpanding conditions, cooperators increase in frequency in spatially expanding populations. Fluorescently labeled colonies show genetic demixing of cooperators and defectors, followed by increase in cooperator frequency as cooperator sectors overtake neighboring defector sectors. Together with lattice-based spatial simulations, our results suggest that spatial population expansion drives the evolution of cooperation by (1) increasing positive genetic assortment at population frontiers and (2) selecting for phenotypes maximizing local deme productivity. Spatial expansion thus creates a selective force whereby cooperator-enriched demes overtake neighboring defector-enriched demes in a "survival of the fastest." We conclude that colony growth alone can promote cooperation and prevent defection in microbes. Our results extend to other species with spatially restricted dispersal undergoing range expansion, including pathogens, invasive species, and humans.

  20. Extended Shared Socioeconomic Pathways for Coastal Impact Assessment: Spatial Coastal Population Scenarios

    Science.gov (United States)

    Merkens, Jan-Ludolf; Reimann, Lena; Hinkel, Jochen; Vafeidis, Athanasios T.

    2016-04-01

    This work extends the Shared Socioeconomic Pathways (SSPs) by developing spatial projections of global coastal population distribution for the five basic SSPs. Based on a series of coastal migration drivers, which were identified from existing literature, we develop coastal narratives for the five basic SSPs (SSP1-5). These narratives account for differences in coastal versus inland population development in urban and rural areas. To spatially distribute population we use the International Institute for Applied Systems Analysis (IIASA) national population and urbanisation projections and employ country-specific growth rates which differ for coastal and inland as well as for urban and rural regions. These rates are derived from spatial analysis of historical population data. We then adjust these rates for each SSP based on the coastal narratives. The resulting global population grids depict the projected distribution of coastal population for each SSP, until the end of the 21st century, at a spatial resolution of 30 arc seconds. These grids exhibit a three- to four-fold increase in coastal population compared to the basic SSPs. Across all SSPs, except for SSP3, coastal population peaks by the middle of the 21st century and declines afterwards. In SSP3 the coastal population grows continuously until 2100. Compared to the base year 2000 the coastal population increases considerably in all SSPs. The extended SSPs are intended to be utilised in Impact, Adaptation and Vulnerability (IAV) assessments as they allow for improved analysis of exposure to sea-level rise and coastal flooding under different physical and socioeconomic scenarios.

  1. Geocoding large population-level administrative datasets at highly resolved spatial scales.

    Science.gov (United States)

    Edwards, Sharon E; Strauss, Benjamin; Miranda, Marie Lynn

    2014-08-01

    Using geographic information systems to link administrative databases with demographic, social, and environmental data allows researchers to use spatial approaches to explore relationships between exposures and health. Traditionally, spatial analysis in public health has focused on the county, zip code, or tract level because of limitations to geocoding at highly resolved scales. Using 2005 birth and death data from North Carolina, we examine our ability to geocode population-level datasets at three spatial resolutions - zip code, street, and parcel. We achieve high geocoding rates at all three resolutions, with statewide street geocoding rates of 88.0% for births and 93.2% for deaths. We observe differences in geocoding rates across demographics and health outcomes, with lower geocoding rates in disadvantaged populations and the most dramatic differences occurring across the urban-rural spectrum. Our results suggest highly resolved spatial data architectures for population-level datasets are viable through geocoding individual street addresses. We recommend routinely geocoding administrative datasets to the highest spatial resolution feasible, allowing public health researchers to choose the spatial resolution used in analysis based on an understanding of the spatial dimensions of the health outcomes and exposures being investigated. Such research, however, must acknowledge how disparate geocoding success across subpopulations may affect findings.

  2. Inferring recruitment history from spatial genetic structure within populations of the colonizing tree Albizia julibrissin (Fabaceae).

    Science.gov (United States)

    Pardini, E A; Hamrick, J L

    2008-06-01

    Comparative analyses of spatial genetic structure (SGS) among species, populations, or cohorts give insight into the genetic consequences of seed dispersal in plants. We analysed SGS of a weedy tree in populations with known and unknown recruitment histories to first establish patterns in populations with single vs. multiple founders, and then to infer possible recruitment scenarios in populations with unknown histories. We analysed SGS in six populations of the colonizing tree Albizia julibrissin Durazz. (Fabaceae) in Athens, Georgia. Study sites included two large populations with multiple, known founders, two small populations with a single, known founder, and two large populations with unknown recruitment histories. Eleven allozyme loci were used to genotype 1385 individuals. Insights about the effects of colonization history from the SGS analyses were obtained from correlograms and Sp statistics. Distinct differences in patterns of SGS were identified between populations with multiple founders vs. a single founder. We observed significant, positive SGS, which decayed with increasing distance in the populations with multiple colonists, but little to no SGS in populations founded by one colonist. Because relatedness among individuals is estimated relative to a local reference population, which usually consists of those individuals sampled in the study population, SGS in populations with high background relatedness, such as those with a single founder, may be obscured. We performed additional analyses using a regional reference population and, in populations with a single founder, detected significant, positive SGS at all distances, indicating that these populations consist of highly related descendants and receive little seed immigration. Subsequent analyses of SGS in size cohorts in the four large study populations showed significant SGS in both juveniles and adults, probably because of a relative lack of intraspecific demographic thinning. SGS in populations

  3. Late Amazonian Glaciations in Utopia Planitia, Mars

    Science.gov (United States)

    Osinski, G. R.; Capitan, R. D.; Kerrigan, M.; Barry, N.; Blain, S.

    2012-03-01

    We present evidence from western Utopia Planitia, including lineated valley fill and lobate debris aprons, for widespread glaciations over a large expanse of the northern plains and dichotomy boundary during Late Amazonian times.

  4. Mapping populations at risk: improving spatial demographic data for infectious disease modeling and metric derivation.

    Science.gov (United States)

    Tatem, Andrew J; Adamo, Susana; Bharti, Nita; Burgert, Clara R; Castro, Marcia; Dorelien, Audrey; Fink, Gunter; Linard, Catherine; John, Mendelsohn; Montana, Livia; Montgomery, Mark R; Nelson, Andrew; Noor, Abdisalan M; Pindolia, Deepa; Yetman, Greg; Balk, Deborah

    2012-05-16

    The use of Global Positioning Systems (GPS) and Geographical Information Systems (GIS) in disease surveys and reporting is becoming increasingly routine, enabling a better understanding of spatial epidemiology and the improvement of surveillance and control strategies. In turn, the greater availability of spatially referenced epidemiological data is driving the rapid expansion of disease mapping and spatial modeling methods, which are becoming increasingly detailed and sophisticated, with rigorous handling of uncertainties. This expansion has, however, not been matched by advancements in the development of spatial datasets of human population distribution that accompany disease maps or spatial models.Where risks are heterogeneous across population groups or space or dependent on transmission between individuals, spatial data on human population distributions and demographic structures are required to estimate infectious disease risks, burdens, and dynamics. The disease impact in terms of morbidity, mortality, and speed of spread varies substantially with demographic profiles, so that identifying the most exposed or affected populations becomes a key aspect of planning and targeting interventions. Subnational breakdowns of population counts by age and sex are routinely collected during national censuses and maintained in finer detail within microcensus data. Moreover, demographic and health surveys continue to collect representative and contemporary samples from clusters of communities in low-income countries where census data may be less detailed and not collected regularly. Together, these freely available datasets form a rich resource for quantifying and understanding the spatial variations in the sizes and distributions of those most at risk of disease in low income regions, yet at present, they remain unconnected data scattered across national statistical offices and websites.In this paper we discuss the deficiencies of existing spatial population datasets and

  5. Mapping populations at risk: improving spatial demographic data for infectious disease modeling and metric derivation

    Directory of Open Access Journals (Sweden)

    Tatem Andrew J

    2012-05-01

    Full Text Available Abstract The use of Global Positioning Systems (GPS and Geographical Information Systems (GIS in disease surveys and reporting is becoming increasingly routine, enabling a better understanding of spatial epidemiology and the improvement of surveillance and control strategies. In turn, the greater availability of spatially referenced epidemiological data is driving the rapid expansion of disease mapping and spatial modeling methods, which are becoming increasingly detailed and sophisticated, with rigorous handling of uncertainties. This expansion has, however, not been matched by advancements in the development of spatial datasets of human population distribution that accompany disease maps or spatial models. Where risks are heterogeneous across population groups or space or dependent on transmission between individuals, spatial data on human population distributions and demographic structures are required to estimate infectious disease risks, burdens, and dynamics. The disease impact in terms of morbidity, mortality, and speed of spread varies substantially with demographic profiles, so that identifying the most exposed or affected populations becomes a key aspect of planning and targeting interventions. Subnational breakdowns of population counts by age and sex are routinely collected during national censuses and maintained in finer detail within microcensus data. Moreover, demographic and health surveys continue to collect representative and contemporary samples from clusters of communities in low-income countries where census data may be less detailed and not collected regularly. Together, these freely available datasets form a rich resource for quantifying and understanding the spatial variations in the sizes and distributions of those most at risk of disease in low income regions, yet at present, they remain unconnected data scattered across national statistical offices and websites. In this paper we discuss the deficiencies of existing

  6. Geocoding large population-level administrative datasets at highly resolved spatial scales

    OpenAIRE

    Edwards, Sharon E.; Strauss, Benjamin; Miranda, Marie Lynn

    2013-01-01

    Using geographic information systems to link administrative databases with demographic, social, and environmental data allows researchers to use spatial approaches to explore relationships between exposures and health. Traditionally, spatial analysis in public health has focused on the county, zip code, or tract level because of limitations to geocoding at highly resolved scales. Using 2005 birth and death data from North Carolina, we examine our ability to geocode population-level datasets a...

  7. Population coding of visual space: comparison of spatial representations in the dorsal and ventral pathways

    Directory of Open Access Journals (Sweden)

    Anne B Sereno

    2011-02-01

    Full Text Available Although the representation of space is as fundamental to visual processing as the representation of shape, it has received relatively little attention from neurophysiological investigations. In this study we characterize representations of space within visual cortex, and examine how they differ in a first direct comparison between dorsal and ventral subdivisions of the visual pathways. Neural activities were recorded in anterior inferotemporal cortex (AIT and lateral intraparietal cortex (LIP of awake behaving monkeys, structures associated with the ventral and dorsal visual pathways respectively, as a stimulus was presented at different locations within the visual field. In spatially selective cells, we find greater modulation of cell responses in LIP with changes in stimulus position. Further, using a novel population-based statistical approach (namely, multidimensional scaling, we recover the spatial map implicit within activities of neural populations, allowing us to quantitatively compare the geometry of neural space with physical space. We show that a population of spatially selective LIP neurons, despite having large receptive fields, is able to almost perfectly reconstruct stimulus locations within a low-dimensional representation. In contrast, a population of AIT neurons, despite each cell being spatially selective, provide less accurate low-dimensional reconstructions of stimulus locations. They produce instead only a topologically (categorically correct rendition of space, which nevertheless might be critical for object and scene recognition. Furthermore, we found that the spatial representation recovered from population activity shows greater translation invariance in LIP than in AIT. We suggest that LIP spatial representations may be dimensionally isomorphic with 3D physical space, while in AIT spatial representations may reflect a more categorical representation of space (e.g., next to or above.

  8. Cannibals in space: the coevolution of cannibalism and dispersal in spatially structured populations.

    Science.gov (United States)

    Rudolf, Volker H W; Kamo, Masashi; Boots, Mike

    2010-05-01

    The propensity for cannibalism varies considerably both within and between species. Currently we have little understanding of both the causes of this variation and its evolutionary consequences for other life-history traits. We examine how different levels of spatial structure affect the evolution of cannibalism and how cannibalism in turn drives the evolution of dispersal. Using pair approximations and simulations, we show that cannibalism can easily evolve in spatially structured populations as long as some dispersal exists. Furthermore, for a wide range of intermediate levels of spatial structure, we find the possibility of evolutionary branching leading to polymorphism in cannibalism. We also show that cannibalism itself can have important evolutionary consequences and select for increased dispersal rates, thus helping to determine the spatial structure of populations. The coevolution of cannibalism and dispersal results in the evolution of various alternative life-history strategies with different dispersal and cannibalism regimes. Which strategy evolves depends on the environmental conditions that determine initial cannibalism rates. Our results therefore suggest that differences in spatial structure could explain variation in the propensity for cannibalism and cannibalistic polyphenism. Furthermore, results emphasize that cannibalism can drive the evolution of other life-history traits and determine the spatial structure of natural populations.

  9. SPATIALIZATION MODEL OF POPULATION BASED ON DATASET OF LAND USE AND LAND COVER CHANGE IN CHINA

    Institute of Scientific and Technical Information of China (English)

    ZHUANGDa-fang; LIUMing-liang; 等

    2002-01-01

    The spatialization of population of counties in China is significant.Fistly,we can gain the estimated val-ues of population density adaptive to different kinds of regions.Secondly,we can integrate effectively population data with other data including natural resources,environment,society and economy,build 1km GRIDs of natural resources re-serves per person,population density and other economic and environmental data,which are necessary to the national manage-ment and macro adjustment and control of natural resources and dynamic monitoring of population.In order to establish population information system serving national decision-making,three steps ought to be followed:1)establishing complete geographical spatial data foundation infrastructure including the establishment of electric map of residence with high resolu-tion using topographical map with large scale and high resolution satellite remote sensing data,the determination of at-tribute information of housing and office buildings,and creating complete set of attribute database and rapid data update-ing;2) establishing complete census systems including improving the transformation efficiency from census data to digital database and strengthening the link of census database and geographical spatial database,meanwhile,the government should attach great importance to the establishment and integration o population migration database;3)considering there is no GIS software specially seving the analysis and management of population data,a practical approach is to add spe-cial modules to present software system,which works as a bring actualizing the digitization and spatialization of popula-tion geography research.

  10. Urban Migration Cartographies. The spatial distribution of foreign population in the City of Buenos Aires (2010

    Directory of Open Access Journals (Sweden)

    Gabriela Mera

    2015-06-01

    Full Text Available This paper sets out to study the spatial distribution of international migrants in the City of Buenos Aires through a statistical and cartographic analysis based on the information collected by the 2010 National Population, Homes and Living Conditions Census. A socio-spatial analysis is carried out of the Census data, which are georeferenced using Geographic Information Systems (GIS. This work is done through thematic mapping and spatial distribution statistical index calculations. Thus, from a quantitative methodological perspective combining a macro-social (as it involves the whole city and a micro-spatial (as it allows for the visualization of differences caused on an intra-urban level scale, what is analyzed is how these groups’ urban presence, which results from various social and spatial trajectories, is evidenced in specific localization patterns within the urban territory

  11. Spatial behaviour of little owls (Athene noctua) in a decreasing farmland population in Denmark

    DEFF Research Database (Denmark)

    Sunde, P.; Thorup, K.; Jacobsen, L. B.

    We describe basic spatial behaviour and social organisation in the small and declining Danish population of little owls. The behaviour was mainly studied using radio tracking during 2005-2007 of 14 pairs of little owls, representing a total of 29 individuals.......We describe basic spatial behaviour and social organisation in the small and declining Danish population of little owls. The behaviour was mainly studied using radio tracking during 2005-2007 of 14 pairs of little owls, representing a total of 29 individuals....

  12. DNA Metabarcoding of Amazonian Ichthyoplankton Swarms

    Science.gov (United States)

    Maggia, M. E.; Vigouroux, Y.; Renno, J. F.; Duponchelle, F.; Desmarais, E.; Nunez, J.; García-Dávila, C.; Carvajal-Vallejos, F. M.; Paradis, E.; Martin, J. F.; Mariac, C.

    2017-01-01

    Tropical rainforests harbor extraordinary biodiversity. The Amazon basin is thought to hold 30% of all river fish species in the world. Information about the ecology, reproduction, and recruitment of most species is still lacking, thus hampering fisheries management and successful conservation strategies. One of the key understudied issues in the study of population dynamics is recruitment. Fish larval ecology in tropical biomes is still in its infancy owing to identification difficulties. Molecular techniques are very promising tools for the identification of larvae at the species level. However, one of their limits is obtaining individual sequences with large samples of larvae. To facilitate this task, we developed a new method based on the massive parallel sequencing capability of next generation sequencing (NGS) coupled with hybridization capture. We focused on the mitochondrial marker cytochrome oxidase I (COI). The results obtained using the new method were compared with individual larval sequencing. We validated the ability of the method to identify Amazonian catfish larvae at the species level and to estimate the relative abundance of species in batches of larvae. Finally, we applied the method and provided evidence for strong temporal variation in reproductive activity of catfish species in the Ucayalí River in the Peruvian Amazon. This new time and cost effective method enables the acquisition of large datasets, paving the way for a finer understanding of reproductive dynamics and recruitment patterns of tropical fish species, with major implications for fisheries management and conservation. PMID:28095487

  13. Competitive spatially distributed population dynamics models: Does diversity in diffusion strategies promote coexistence?

    Science.gov (United States)

    Braverman, E; Kamrujjaman, Md; Korobenko, L

    2015-06-01

    We study the interaction between different types of dispersal, intrinsic growth rates and carrying capacities of two competing species in a heterogeneous environment: one of them is subject to a regular diffusion while the other moves in the direction of most per capita available resources. If spatially heterogeneous carrying capacities coincide, and intrinsic growth rates are proportional then competitive exclusion of a regularly diffusing population is inevitable. However, the situation may change if intrinsic growth rates for the two populations have different spatial forms. We also consider the case when carrying capacities are different. If the carrying capacity of a regularly diffusing population is higher than for the other species, the two populations may coexist; as the difference between the two carrying capacities grows, competitive exclusion of the species with a lower carrying capacity occurs.

  14. Hierarchical spatial structure of genetically variable nucleopolyhedroviruses infecting cyclic populations of western tent caterpillars.

    Science.gov (United States)

    Cooper, Dawn; Cory, Jenny S; Myers, Judith H

    2003-04-01

    The cyclic population dynamics of western tent caterpillars, Malacosoma californicum pluviale, are associated with epizootics of a nucleopolyhedrovirus, McplNPV. Given the dynamic fluctuations in host abundance and levels of viral infection, host resistance and virus virulence might be expected to change during different phases of the cycle. As a first step in determining if McplNPV virulence and population structure change with host density, we used restriction fragment length polymorphism (RFLP) analysis to examine the genetic diversity of McplNPV infecting western tent caterpillar populations at different spatial scales. Thirteen dominant genetic variants were identified in 39 virus isolates (individual larvae) collected from field populations during one year of low host density, and another distinct variant was discovered among nine additional isolates in two subsequent years of declining host density. The distribution of these genetic variants was not random and indicated that the McplNPV population was structured at several spatial levels. A high proportion of the variation could be explained by family grouping, which suggested that isolates collected within a family were more likely to be the same than isolates compared among populations. Additionally, virus variants from within populations (sites) were more likely to be the same than isolates collected from tent caterpillar populations on different islands. This may indicate that there is limited mixing of virus among tent caterpillar families and populations when host population density is low. Thus there is potential for the virus to become locally adapted to western tent caterpillar populations in different sites. However, no dominant genotype was observed at any site. Whether and how selection acts on the genetically diverse nucleopolyhedrovirus populations as host density changes will be investigated over the next cycle of tent caterpillar populations.

  15. Atlantic bluefin tuna: a novel multistock spatial model for assessing population biomass.

    Directory of Open Access Journals (Sweden)

    Nathan G Taylor

    Full Text Available Atlantic bluefin tuna (Thunnus thynnus is considered to be overfished, but the status of its populations has been debated, partly because of uncertainties regarding the effects of mixing on fishing grounds. A better understanding of spatial structure and mixing may help fisheries managers to successfully rebuild populations to sustainable levels while maximizing catches. We formulate a new seasonally and spatially explicit fisheries model that is fitted to conventional and electronic tag data, historic catch-at-age reconstructions, and otolith microchemistry stock-composition data to improve the capacity to assess past, current, and future population sizes of Atlantic bluefin tuna. We apply the model to estimate spatial and temporal mixing of the eastern (Mediterranean and western (Gulf of Mexico populations, and to reconstruct abundances from 1950 to 2008. We show that western and eastern populations have been reduced to 17% and 33%, respectively, of 1950 spawning stock biomass levels. Overfishing to below the biomass that produces maximum sustainable yield occurred in the 1960s and the late 1990s for western and eastern populations, respectively. The model predicts that mixing depends on season, ontogeny, and location, and is highest in the western Atlantic. Assuming that future catches are zero, western and eastern populations are predicted to recover to levels at maximum sustainable yield by 2025 and 2015, respectively. However, the western population will not recover with catches of 1750 and 12,900 tonnes (the "rebuilding quotas" in the western and eastern Atlantic, respectively, with or without closures in the Gulf of Mexico. If future catches are double the rebuilding quotas, then rebuilding of both populations will be compromised. If fishing were to continue in the eastern Atlantic at the unregulated levels of 2007, both stocks would continue to decline. Since populations mix on North Atlantic foraging grounds, successful rebuilding

  16. Temporally increasing spatial synchrony of North American temperature and bird populations

    Science.gov (United States)

    Koenig, Walter D.; Liebhold, Andrew M.

    2016-06-01

    The ecological impacts of modern global climate change are detectable in a wide variety of phenomena, ranging from shifts in species ranges to changes in community composition and human disease dynamics. So far, however, little attention has been given to temporal changes in spatial synchrony--the coincident change in abundance or value across the landscape--despite the importance of environmental synchrony as a driver of population trends and the central role of environmental variability in population rescue and extinction. Here we demonstrate that across North America, spatial synchrony of a significant proportion of 49 widespread North American wintering bird species has increased over the past 50 years--the period encompassing particularly intense anthropogenic effects in climate--paralleling significant increases in spatial synchrony of mean maximum air temperature. These results suggest the potential for increased spatial synchrony in environmental factors to be affecting a wide range of ecological phenomena. These effects are likely to vary, but for North American wildlife species, increased spatial synchrony driven by environmental factors may be the basis for a previously unrecognized threat to their long-term persistence in the form of more synchronized population dynamics reducing the potential for demographic rescue among interacting subpopulations.

  17. Assessing spatial coupling in complex population dynamics using mutual prediction and continuity statistics

    Science.gov (United States)

    Nichols, J.M.; Moniz, L.; Nichols, J.D.; Pecora, L.M.; Cooch, E.

    2005-01-01

    A number of important questions in ecology involve the possibility of interactions or ?coupling? among potential components of ecological systems. The basic question of whether two components are coupled (exhibit dynamical interdependence) is relevant to investigations of movement of animals over space, population regulation, food webs and trophic interactions, and is also useful in the design of monitoring programs. For example, in spatially extended systems, coupling among populations in different locations implies the existence of redundant information in the system and the possibility of exploiting this redundancy in the development of spatial sampling designs. One approach to the identification of coupling involves study of the purported mechanisms linking system components. Another approach is based on time series of two potential components of the same system and, in previous ecological work, has relied on linear cross-correlation analysis. Here we present two different attractor-based approaches, continuity and mutual prediction, for determining the degree to which two population time series (e.g., at different spatial locations) are coupled. Both approaches are demonstrated on a one-dimensional predator?prey model system exhibiting complex dynamics. Of particular interest is the spatial asymmetry introduced into the model as linearly declining resource for the prey over the domain of the spatial coordinate. Results from these approaches are then compared to the more standard cross-correlation analysis. In contrast to cross-correlation, both continuity and mutual prediction are clearly able to discern the asymmetry in the flow of information through this system.

  18. Competing populations on fragmented landscapes with spatially structured heterogeneities: improved landscape generation and mixed dispersal strategies.

    Science.gov (United States)

    Hiebeler, David E

    2007-03-01

    Interactions between two species competing for space were studied using stochastic spatially explicit lattice-based simulations as well as pair approximations. The two species differed only in their dispersal strategies, which were characterized by the proportion of reproductive effort allocated to long-distance (far) dispersal versus short-distance (near) dispersal to adjacent sites. All population dynamics took place on landscapes with spatially clustered distributions of suitable habitat, described by two parameters specifying the amount and the local spatial autocorrelation of suitable habitat. Whereas previous results indicated that coexistence between pure near and far dispersers was very rare, taking place over only a very small region of the landscape parameter space, when mixed strategies are allowed, multiple strategies can coexist over a much wider variety of landscapes. On such spatially structured landscapes, the populations can partition the habitat according to local conditions, with one species using pure near dispersal to exploit large contiguous patches of suitable habitat, and another species using mixed dispersal to colonize isolated smaller patches (via far dispersal) and then rapidly exploit those patches (via near dispersal). An improved mean-field approximation which incorporates the spatially clustered habitat distribution is developed for modeling a single species on these landscapes, along with an improved Monte Carlo algorithm for generating spatially clustered habitat distributions.

  19. Spatial structure induced by marine reserves shapes population responses to catastrophes in mathematical models.

    Science.gov (United States)

    McGilliard, Carey R; Punt, André E; Hilborn, Ray

    2011-06-01

    Catastrophic events such as oil spills, hypoxia, disease, and major predation events occur in marine ecosystems and affect fish populations. Previous evaluations of the performance of spatial management alternatives have not considered catastrophic events. We investigate the effects of local and global catastrophic events on populations managed with and without no-take marine reserves and with fishing mortality rates that are optimized accounting for reserves. A spatial population dynamics model is used to explore effects of large, catastrophic natural mortality events. The effects of the spatial spread, magnitude, probability of catastrophe, and persistence of a catastrophic event through time are explored. Catastrophic events affecting large spatial areas and those that persist through time have the greatest effects on population dynamics because they affect natural mortality nonlinearly, whereas the probability and magnitude of catastrophic events result in only linear increases in natural mortality. The probability of falling below 10% or 20% of unfished abundance was greatest when a no-take marine reserve was implemented with no additional fishing regulations and least when a no-take marine reserve was implemented in addition to the maintenance of optimal fishing mortality in fished areas. In the absence of implementation error, maintaining abundance across space using restrictions on fishing mortality rates, regardless of the existence of a no-take marine reserve, decreased the probability of falling below 10% or 20% of unfished abundance.

  20. Population spatial structuring on the feeding grounds in North Atlantic humpback whales (Megaptera novaeangliae)

    NARCIS (Netherlands)

    Stevick, P. T.; Allen, J.; Clapham, P. J.; Katona, S. K.; Larsen, F.; Lien, J.; Mattila, D. K.; Palsboll, P. J.; Sears, R.; Sigurjonsson, J.; Smith, T. D.; Vikingsson, G.; Oien, N.; Hammond, P. S.

    2006-01-01

    Population spatial structuring among North Atlantic humpback whales Megaptera novaeangliae on the summer feeding grounds was investigated using movement patterns of identified individuals. We analysed the results from an intensive 2-year ocean-basin-scale investigation resulting in 1658 individuals

  1. Spatial Data Mining of a Population-Based Data Warehouse of Cancer in Mexico

    Directory of Open Access Journals (Sweden)

    Joaquín Pérez-Ortega

    2010-05-01

    Full Text Available In the health sciences area, data mining applications have had a fast growth due to its results concerning the generation of patterns of interest; however, its application to spatial population-based databases has been scant. This paper shows the results obtained by applying a spatial data mining system of our making to a real population-based data warehouse of cancer mortality in Mexico. The system consists of a pattern generator module, which uses a variant of a clustering algorithm proposed by us, and a spatial visualization module. Several interesting and potentially useful patterns of stomach cancer were found in the northwest of Mexico, which show promising results for extending the use of data mining in the area of epidemiology.

  2. ANALYSIS ON THE DYNAMICS OF SPATIAL DISTRIBUTION PATTERN OF MIXED SPIDER POPULATION IN RICE FIELD

    Institute of Scientific and Technical Information of China (English)

    ZhiWang; Zhe-mingYuan; Da-xiangSong; Ming-shengZhu

    2004-01-01

    The results make it clear that there are total 11 families, 29 genera and 43 species of spiders in the rice field of Dong Fang Hong Farm. Among them, there are 8 families, 19 genera and 28 species in the early rice field, and 10 families, 27 genera and 36 species in the late rice field. The spatial distribution pattern of mixed spider populations in rice fields was different during different development stages of rice plant. During the prophase, metaphase and anaphase of early rice plant development, the spatial distribution pattern of mixed spider populations was aggregative, random and aggregative respectively. During the prophase, metaphase and anaphase of late rice plant development, the spatial distribution pattern was uniform, aggregative and uniform respectively.

  3. Counting Cats: Spatially Explicit Population Estimates of Cheetah (Acinonyx jubatus) Using Unstructured Sampling Data.

    Science.gov (United States)

    Broekhuis, Femke; Gopalaswamy, Arjun M

    2016-01-01

    Many ecological theories and species conservation programmes rely on accurate estimates of population density. Accurate density estimation, especially for species facing rapid declines, requires the application of rigorous field and analytical methods. However, obtaining accurate density estimates of carnivores can be challenging as carnivores naturally exist at relatively low densities and are often elusive and wide-ranging. In this study, we employ an unstructured spatial sampling field design along with a Bayesian sex-specific spatially explicit capture-recapture (SECR) analysis, to provide the first rigorous population density estimates of cheetahs (Acinonyx jubatus) in the Maasai Mara, Kenya. We estimate adult cheetah density to be between 1.28 ± 0.315 and 1.34 ± 0.337 individuals/100km2 across four candidate models specified in our analysis. Our spatially explicit approach revealed 'hotspots' of cheetah density, highlighting that cheetah are distributed heterogeneously across the landscape. The SECR models incorporated a movement range parameter which indicated that male cheetah moved four times as much as females, possibly because female movement was restricted by their reproductive status and/or the spatial distribution of prey. We show that SECR can be used for spatially unstructured data to successfully characterise the spatial distribution of a low density species and also estimate population density when sample size is small. Our sampling and modelling framework will help determine spatial and temporal variation in cheetah densities, providing a foundation for their conservation and management. Based on our results we encourage other researchers to adopt a similar approach in estimating densities of individually recognisable species.

  4. Counting Cats: Spatially Explicit Population Estimates of Cheetah (Acinonyx jubatus Using Unstructured Sampling Data.

    Directory of Open Access Journals (Sweden)

    Femke Broekhuis

    Full Text Available Many ecological theories and species conservation programmes rely on accurate estimates of population density. Accurate density estimation, especially for species facing rapid declines, requires the application of rigorous field and analytical methods. However, obtaining accurate density estimates of carnivores can be challenging as carnivores naturally exist at relatively low densities and are often elusive and wide-ranging. In this study, we employ an unstructured spatial sampling field design along with a Bayesian sex-specific spatially explicit capture-recapture (SECR analysis, to provide the first rigorous population density estimates of cheetahs (Acinonyx jubatus in the Maasai Mara, Kenya. We estimate adult cheetah density to be between 1.28 ± 0.315 and 1.34 ± 0.337 individuals/100km2 across four candidate models specified in our analysis. Our spatially explicit approach revealed 'hotspots' of cheetah density, highlighting that cheetah are distributed heterogeneously across the landscape. The SECR models incorporated a movement range parameter which indicated that male cheetah moved four times as much as females, possibly because female movement was restricted by their reproductive status and/or the spatial distribution of prey. We show that SECR can be used for spatially unstructured data to successfully characterise the spatial distribution of a low density species and also estimate population density when sample size is small. Our sampling and modelling framework will help determine spatial and temporal variation in cheetah densities, providing a foundation for their conservation and management. Based on our results we encourage other researchers to adopt a similar approach in estimating densities of individually recognisable species.

  5. Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations.

    Science.gov (United States)

    Jones, Matthew R; Forester, Brenna R; Teufel, Ashley I; Adams, Rachael V; Anstett, Daniel N; Goodrich, Betsy A; Landguth, Erin L; Joost, Stéphane; Manel, Stéphanie

    2013-12-01

    Uncovering the genetic basis of adaptation hinges on the ability to detect loci under selection. However, population genomics outlier approaches to detect selected loci may be inappropriate for clinal populations or those with unclear population structure because they require that individuals be clustered into populations. An alternate approach, landscape genomics, uses individual-based approaches to detect loci under selection and reveal potential environmental drivers of selection. We tested four landscape genomics methods on a simulated clinal population to determine their effectiveness at identifying a locus under varying selection strengths along an environmental gradient. We found all methods produced very low type I error rates across all selection strengths, but elevated type II error rates under "weak" selection. We then applied these methods to an AFLP genome scan of an alpine plant, Campanula barbata, and identified five highly supported candidate loci associated with precipitation variables. These loci also showed spatial autocorrelation and cline patterns indicative of selection along a precipitation gradient. Our results suggest that landscape genomics in combination with other spatial analyses provides a powerful approach for identifying loci potentially under selection and explaining spatially complex interactions between species and their environment.

  6. Redistribution population data across a regular spatial grid according to buildings characteristics

    Science.gov (United States)

    Calka, Beata; Bielecka, Elzbieta; Zdunkiewicz, Katarzyna

    2016-12-01

    Population data are generally provided by state census organisations at the predefined census enumeration units. However, these datasets very are often required at userdefined spatial units that differ from the census output levels. A number of population estimation techniques have been developed to address these problems. This article is one of those attempts aimed at improving county level population estimates by using spatial disaggregation models with support of buildings characteristic, derived from national topographic database, and average area of a flat. The experimental gridded population surface was created for Opatów county, sparsely populated rural region located in Central Poland. The method relies on geolocation of population counts in buildings, taking into account the building volume and structural building type and then aggregation the people total in 1 km quadrilateral grid. The overall quality of population distribution surface expressed by the mean of RMSE equals 9 persons, and the MAE equals 0.01. We also discovered that nearly 20% of total county area is unpopulated and 80% of people lived on 33% of the county territory.

  7. Sensitivity analyses of spatial population viability analysis models for species at risk and habitat conservation planning.

    Science.gov (United States)

    Naujokaitis-Lewis, Ilona R; Curtis, Janelle M R; Arcese, Peter; Rosenfeld, Jordan

    2009-02-01

    Population viability analysis (PVA) is an effective framework for modeling species- and habitat-recovery efforts, but uncertainty in parameter estimates and model structure can lead to unreliable predictions. Integrating complex and often uncertain information into spatial PVA models requires that comprehensive sensitivity analyses be applied to explore the influence of spatial and nonspatial parameters on model predictions. We reviewed 87 analyses of spatial demographic PVA models of plants and animals to identify common approaches to sensitivity analysis in recent publications. In contrast to best practices recommended in the broader modeling community, sensitivity analyses of spatial PVAs were typically ad hoc, inconsistent, and difficult to compare. Most studies applied local approaches to sensitivity analyses, but few varied multiple parameters simultaneously. A lack of standards for sensitivity analysis and reporting in spatial PVAs has the potential to compromise the ability to learn collectively from PVA results, accurately interpret results in cases where model relationships include nonlinearities and interactions, prioritize monitoring and management actions, and ensure conservation-planning decisions are robust to uncertainties in spatial and nonspatial parameters. Our review underscores the need to develop tools for global sensitivity analysis and apply these to spatial PVA.

  8. Spatially explicit models for inference about density in unmarked or partially marked populations

    Science.gov (United States)

    Chandler, Richard B.; Royle, J. Andrew

    2013-01-01

    Recently developed spatial capture–recapture (SCR) models represent a major advance over traditional capture–recapture (CR) models because they yield explicit estimates of animal density instead of population size within an unknown area. Furthermore, unlike nonspatial CR methods, SCR models account for heterogeneity in capture probability arising from the juxtaposition of animal activity centers and sample locations. Although the utility of SCR methods is gaining recognition, the requirement that all individuals can be uniquely identified excludes their use in many contexts. In this paper, we develop models for situations in which individual recognition is not possible, thereby allowing SCR concepts to be applied in studies of unmarked or partially marked populations. The data required for our model are spatially referenced counts made on one or more sample occasions at a collection of closely spaced sample units such that individuals can be encountered at multiple locations. Our approach includes a spatial point process for the animal activity centers and uses the spatial correlation in counts as information about the number and location of the activity centers. Camera-traps, hair snares, track plates, sound recordings, and even point counts can yield spatially correlated count data, and thus our model is widely applicable. A simulation study demonstrated that while the posterior mean exhibits frequentist bias on the order of 5–10% in small samples, the posterior mode is an accurate point estimator as long as adequate spatial correlation is present. Marking a subset of the population substantially increases posterior precision and is recommended whenever possible. We applied our model to avian point count data collected on an unmarked population of the northern parula (Parula americana) and obtained a density estimate (posterior mode) of 0.38 (95% CI: 0.19–1.64) birds/ha. Our paper challenges sampling and analytical conventions in ecology by demonstrating

  9. Development of population geography from antropogeography to spatial-analitical approach

    Directory of Open Access Journals (Sweden)

    Spasovski Milena

    2013-01-01

    .N. Anučin, J. Beaujeu-Gariner. G. Trewarta argued that the population is the point of reference from which all other elements are observed and from which all derive significance and meaning. This view was adopted and shared by authors dealing with population items, explicitly or implicitly. Second stage lasted from 1960s till 1970s and the most significant authors dealing with population problems were W. Zelinsky, W. Bunge; H.Bobek, W. Hartke, K.Ruppert, F.Schaffer; D.I. Valentej, K.Korčak. This phase was characterized by the application of quantitative methods and efforts for understanding the spatial structure of the population. Many scientists see this development phase as a particularly prosperous period, because it carried more intensive relations of geography and demography through the introduction of statistical, mathematical and demographic methods and techniques in studies of population geography. Third phase lasted from 1970s to 1980s, and was characterized by close relations between population geography and formal demography. Development and application of GIS and computer data, have made population studies more complex and applicable in practice, through population policy and population projections. The most significant authors in this period were L. Kosinski, A. Jagelski, Hägerstrand. And at last, fourth stage started in 1980s and in many countries lastes untill present days. In population geography appeared new tendencies associated with the critique of positivism, the establishment of humanistic approaches and modifications of general geographic concepts. In this period, spatial analysis and quantitative scientific methods were reaffirmed, and because of that some population studies were redefined in spatial demography, a time dimension advocated in historical demography. In this context, we emphasize the work of D. Plane and P. Rogerson. Population geography is viewed differently from one country to another. Its definition differs from too narrow to

  10. Temporal and spatial variations in wildlife population fluctuations in Greenland; The effect of climate, environment and man

    DEFF Research Database (Denmark)

    Moshøj, Charlotte Margaret; Forchhammer, Mads C.; Forbes, Valery E.

    2009-01-01

    Temporal and spatial variations in wildlife population fluctuations in Greenland; The effect of climate, environment and man Moshøj, C.M, M.C.Forchhammer and V.E. Forbes Temporal and spatial variations in wildlife population fluctuations in Greenland; The effect of climate, environment and man...... and mammals display distinct population fluctuations of varying temporal and spatial scale. In Greenland, historical records, archaeological findings and oral accounts passed on from Inuit elders all document that the presence of wildlife species and their population sizes have undergone pronounced....... The results of this study will model future predictions of wildlife populations under changing climate variables and human hunting pressure....

  11. Fire-free land use in pre-1492 Amazonian savannas.

    Science.gov (United States)

    Iriarte, José; Power, Mitchell J; Rostain, Stéphen; Mayle, Francis E; Jones, Huw; Watling, Jennifer; Whitney, Bronwen S; McKey, Doyle B

    2012-04-24

    The nature and scale of pre-Columbian land use and the consequences of the 1492 "Columbian Encounter" (CE) on Amazonia are among the more debated topics in New World archaeology and paleoecology. However, pre-Columbian human impact in Amazonian savannas remains poorly understood. Most paleoecological studies have been conducted in neotropical forest contexts. Of studies done in Amazonian savannas, none has the temporal resolution needed to detect changes induced by either climate or humans before and after A.D. 1492, and only a few closely integrate paleoecological and archaeological data. We report a high-resolution 2,150-y paleoecological record from a French Guianan coastal savanna that forces reconsideration of how pre-Columbian savanna peoples practiced raised-field agriculture and how the CE impacted these societies and environments. Our combined pollen, phytolith, and charcoal analyses reveal unexpectedly low levels of biomass burning associated with pre-A.D. 1492 savanna raised-field agriculture and a sharp increase in fires following the arrival of Europeans. We show that pre-Columbian raised-field farmers limited burning to improve agricultural production, contrasting with extensive use of fire in pre-Columbian tropical forest and Central American savanna environments, as well as in present-day savannas. The charcoal record indicates that extensive fires in the seasonally flooded savannas of French Guiana are a post-Columbian phenomenon, postdating the collapse of indigenous populations. The discovery that pre-Columbian farmers practiced fire-free savanna management calls into question the widely held assumption that pre-Columbian Amazonian farmers pervasively used fire to manage and alter ecosystems and offers fresh perspectives on an emerging alternative approach to savanna land use and conservation that can help reduce carbon emissions.

  12. Consumo alimentar e ecologia de populações ribeirinhas em dois ecossistemas amazônicos: um estudo comparativo Food intake and ecology of riverine populations in two Amazonian ecosystems: a comparative analysis

    Directory of Open Access Journals (Sweden)

    Rui Sérgio Sereni Murrieta

    2008-08-01

    Full Text Available OBJETIVO: Este artigo analisa e compara os dados de consumo alimentar de duas populações ribeirinhas da Amazônia vivendo em ecossistemas contrastantes de floresta tropical: a várzea estacional e a floresta de terra firme. MÉTODOS: Foi estudado o consumo alimentar de 11 unidades domésticas na várzea (Ilha de Ituqui, Município de Santarém e 17 na terra firme (Floresta Nacional de Caxiuanã, Municípios de Melgaço e Portel. O método utilizado foi o recordatório de 24 horas. As análises estatísticas foram executadas com o auxílio do programa Statistical Package for Social Sciences 12.0. RESULTADOS: Em ambos os ecossistemas, os resultados confirmam a centralidade do pescado e da mandioca na dieta local. Porém, a contribuição de outros itens alimentares secundários, tais como o açaí (em Caxiuanã e o leite in natura (em Ituqui, também foi significante. Além disso, o açúcar revelou ser uma fonte de energia confiável para enfrentar as flutuações sazonais dos recursos naturais. Parece haver ainda uma maior contribuição energética dos peixes para a dieta de Ituqui, provavelmente em função da maior produtividade dos rios e lagos da várzea em relação à terra firme. Por fim, Ituqui revelou uma maior dependência de itens alimentares comprados, enquanto Caxiuanã mostrou estar ainda bastante vinculada à agricultura e às redes locais de troca. CONCLUSÃO: Além dos resultados confirmarem a importância do pescado e da mandioca, também mostraram que produtos industrializados, como o açúcar, têm um papel importante nas dietas, podendo apontar para tendências no consumo alimentar relacionadas com a atual transição nutricional e com a erosão, em diferentes níveis, dos sistemas de subsistência locais.OBJECTIVE: This article analyses and compares data on household food intake of two Amazonian riverine populations settled in different rain forest ecosystems: terra firme (land not subject to annual flooding forest and

  13. Genetic structure, spatial organization, and dispersal in two populations of bat-eared foxes.

    Science.gov (United States)

    Kamler, Jan F; Gray, Melissa M; Oh, Annie; Macdonald, David W

    2013-09-01

    We incorporated radio-telemetry data with genetic analysis of bat-eared foxes (Otocyon megalotis) from individuals in 32 different groups to examine relatedness and spatial organization in two populations in South Africa that differed in density, home-range sizes, and group sizes. Kin clustering occurred only for female dyads in the high-density population. Relatedness was negatively correlated with distance only for female dyads in the high-density population, and for male and mixed-sex dyads in the low-density population. Home-range overlap of neighboring female dyads was significantly greater in the high compared to low-density population, whereas overlap within other dyads was similar between populations. Amount of home-range overlap between neighbors was positively correlated with genetic relatedness for all dyad-site combinations, except for female and male dyads in the low-density population. Foxes from all age and sex classes dispersed, although females (mostly adults) dispersed farther than males. Yearlings dispersed later in the high-density population, and overall exhibited a male-biased dispersal pattern. Our results indicated that genetic structure within populations of bat-eared foxes was sex-biased, and was interrelated to density and group sizes, as well as sex-biases in philopatry and dispersal distances. We conclude that a combination of male-biased dispersal rates, adult dispersals, and sex-biased dispersal distances likely helped to facilitate inbreeding avoidance in this evolutionarily unique species of Canidae.

  14. Estimating the spatial distribution of wintering little brown bat populations in the eastern United States

    Science.gov (United States)

    Russell, Robin E.; Tinsley, Karl; Erickson, Richard A.; Thogmartin, Wayne E.; Jennifer A. Szymanski,

    2014-01-01

    Depicting the spatial distribution of wildlife species is an important first step in developing management and conservation programs for particular species. Accurate representation of a species distribution is important for predicting the effects of climate change, land-use change, management activities, disease, and other landscape-level processes on wildlife populations. We developed models to estimate the spatial distribution of little brown bat (Myotis lucifugus) wintering populations in the United States east of the 100th meridian, based on known hibernacula locations. From this data, we developed several scenarios of wintering population counts per county that incorporated uncertainty in the spatial distribution of the hibernacula as well as uncertainty in the size of the current little brown bat population. We assessed the variability in our results resulting from effects of uncertainty. Despite considerable uncertainty in the known locations of overwintering little brown bats in the eastern United States, we believe that models accurately depicting the effects of the uncertainty are useful for making management decisions as these models are a coherent organization of the best available information.

  15. Population responses to environmental change in a tropical ant: the interaction of spatial and temporal dynamics.

    Directory of Open Access Journals (Sweden)

    Doug Jackson

    Full Text Available Spatial structure can have a profound, but often underappreciated, effect on the temporal dynamics of ecosystems. Here we report on a counterintuitive increase in the population of a tree-nesting ant, Azteca sericeasur, in response to a drastic reduction in the number of potential nesting sites. This surprising result is comprehensible when viewed in the context of the self-organized spatial dynamics of the ants and their effect on the ants' dispersal-limited natural enemies. Approximately 30% of the trees in the study site, a coffee agroecosystem in southern Mexico, were pruned or felled over a two-year period, and yet the abundance of the ant nests more than doubled over the seven-year study. Throughout the transition, the spatial distribution of the ants maintained a power-law distribution - a signal of spatial self organization - but the local clustering of the nests was reduced post-pruning. A cellular automata model incorporating the changed spatial structure of the ants and the resulting partial escape from antagonists reproduced the observed increase in abundance, highlighting how self-organized spatial dynamics can profoundly influence the responses of ecosystems to perturbations.

  16. Amazonian dark earths and Caboclo subsistence on the middle Madeira River, Brazil

    OpenAIRE

    Fraser, James Angus

    2010-01-01

    This thesis examines the relationship between Amazonian Dark Earths (ADE) and Caboclo subsistence on the Middle Madeira River, Brazil. ADE are fertile anthropogenic (man-made) soils formed through practices of burning and waste disposal by pre-Columbian Amerindian populations. “Caboclo” is a social category that refers to the people of diverse origins that form the majority of the contemporary rural population of Brazilian Amazonia. Bitter manioc fields (roças) and homegardens (sítios) are th...

  17. Urbanisation and Growth of Slum Population in Jharkhand: A Spatial Analysis

    Directory of Open Access Journals (Sweden)

    Rahul Harshwardhan

    2015-06-01

    Full Text Available The objective of this paper is to examine the relation between the pace of urbanisation and growth of slum population in Jharkhand. This paper also attempts to analyse the trends and patterns of growth of slum population at the district level in Jharkhand. In terms of urbanisation process of India, slums have become an integral part of urban scenario. In India, rapid growth of slums is the result of rural-urban migration of the rural poor to the cities/towns in search of employment in the last two decades. In the absence of any affordable housing, there has been growth of slums in the urban areas of the country. In India, out of a total population of 1.21 billion, 31.30% population resides in the urban areas, but 21.68% (61.8 million of the total urban population live in the slums. Slums are considered as a major problem within the urban areas, particularly in relation to the issues of transportation, population growth, health and safety. The developing states or regions of India are more prone to this problem due to the lack of infrastructural development and heavy urban population pressure. Like other states of India, Jharkhand too is facing the problem of slums. After its separation from Bihar in 2000, the rate of urbanisation and the rate of growth of slums had gone high. The study reveals that in 2001, there were only 11 urban centers consisting of slum population but in 2011, it reached to 31. The slum population registers 23.68% growth while the urban population growth stands at 32%. This paper is primarily based on secondary data collected from different governmental agencies, particularly the Census data of population to analyse the spatial distribution of slum population in the districts of Jharkhand. This study explores the changing urbanisation scenario in Jharkhand and the growth of slums with respect to it.

  18. Spatially differentiated and source-specific population exposure to ambient urban air pollution

    Science.gov (United States)

    Zou, Bin; Wilson, J. Gaines; Zhan, F. Benjamin; Zeng, Yongnian

    Models assessing exposure to air pollution often focus on macro-scale estimates of exposure to all types of sources for a particular pollutant across an urban study area. While results based on these models may aid policy makers in identifying larger areas of elevated exposure risk, they often do not differentiate the proportion of population exposure attributable to different polluting sources (e.g. traffic or industrial). In this paper, we introduce a population exposure modeling system that integrates air dispersion modeling, Geographic Information Systems (GIS), and population exposure techniques to spatially characterize a source-specific exposure to ambient air pollution for an entire urban population at a fine geographical scale. By area, total population exposure in Dallas County in 2000 was more attributable to vehicle polluting sources than industrial polluting sources at all levels of exposure. Population exposure was moderately correlated with vehicle sources ( r = 0.440, p air quality assessments must incorporate more than industrial or vehicle polluting sources-based population exposure values alone, but should consider multiple sources. The population exposure modeling system proposed in this study shows promise for use by municipal authorities, policy makers, and epidemiologists in evaluating and controlling the quality of the air in the process of urban planning and mitigation measures.

  19. Spatial distribution pattern, scale and gap characteristics of Pinus armandii population in Qinling Mountains, China

    Institute of Scientific and Technical Information of China (English)

    LAN Guoyu; CHEN Wei; LEI Ruide

    2007-01-01

    Based on the data collected from 27 plots of the Pinus armandii community in Qinling Mountains,we studied the spatial distribution pattern,scale,and gap characteristics of the P.armandii population.The results showed that the population had a clumped distribution before age 50.At the age range from 15 to 25,though the population tended to be distributed randomly,the distribution was still clumped.The population distribution at the age range from 40 to 50 was at the transitional stage from clumped to random.After age 50,the population started to be senesced,the distribution pattern turning from clumped to random.The distribution pattern scale of P.armandii always changes with the development stage of the population,being 100 m2 in general.The gap size of P armandii population was similar to its distribution pattem scale,and the gaps of 80-130 m2 occupied 59% of the total.Because of the better light and nutrient condition in the gap,P.armandii seedlings grew well,which helped the population keep its stability through "mobile mosaic circling".

  20. Life-history and spatial determinants of somatic growth dynamics in Komodo dragon populations.

    Directory of Open Access Journals (Sweden)

    Rebecca J Laver

    Full Text Available Somatic growth patterns represent a major component of organismal fitness and may vary among sexes and populations due to genetic and environmental processes leading to profound differences in life-history and demography. This study considered the ontogenic, sex-specific and spatial dynamics of somatic growth patterns in ten populations of the world's largest lizard the Komodo dragon (Varanus komodoensis. The growth of 400 individual Komodo dragons was measured in a capture-mark-recapture study at ten sites on four islands in eastern Indonesia, from 2002 to 2010. Generalized Additive Mixed Models (GAMMs and information-theoretic methods were used to examine how growth rates varied with size, age and sex, and across and within islands in relation to site-specific prey availability, lizard population density and inbreeding coefficients. Growth trajectories differed significantly with size and between sexes, indicating different energy allocation tactics and overall costs associated with reproduction. This leads to disparities in maximum body sizes and longevity. Spatial variation in growth was strongly supported by a curvilinear density-dependent growth model with highest growth rates occurring at intermediate population densities. Sex-specific trade-offs in growth underpin key differences in Komodo dragon life-history including evidence for high costs of reproduction in females. Further, inverse density-dependent growth may have profound effects on individual and population level processes that influence the demography of this species.

  1. Stellar population gradients and spatially resolved kinematics in luminous post-starburst galaxies

    CERN Document Server

    Pracy, M B; Sadler, E; Couch, W J; Kuntschner, H; Bekki, K; Owers, M S; Zwaan, M; Turner, J; Bergmann, M

    2013-01-01

    We have used deep integral field spectroscopy obtained with the GMOS instrument on Gemini-North to determine the spatial distribution of the post-starburst stellar population in four luminous E+A galaxies at z<0.04. We find all four galaxies have centrally-concentrated gradients in the young stellar population contained within the central ~1 kpc. This is in agreement with the Balmer line gradients found in local low luminosity E+A galaxies. The results from higher redshift (z~0.1) samples of luminous E+A galaxies have been varied, but in general have found the post-starburst signature to be extended or a galaxy-wide phenomenon or have otherwise failed to detect gradients in the stellar populations. The ubiquity of the detection of a centrally concentrated young stellar population in local samples, and the presence of significant radial gradients in the stellar populations when the E+A galaxy core is well resolved raises the possibility that spatial resolution issues may be important in interpreting the hig...

  2. Spatial analysis of corresponding fingerprint features from match and close non-match populations.

    Science.gov (United States)

    Abraham, Joshua; Champod, Christophe; Lennard, Chris; Roux, Claude

    2013-07-10

    The development of statistical models for forensic fingerprint identification purposes has been the subject of increasing research attention in recent years. This can be partly seen as a response to a number of commentators who claim that the scientific basis for fingerprint identification has not been adequately demonstrated. In addition, key forensic identification bodies such as ENFSI [1] and IAI [2] have recently endorsed and acknowledged the potential benefits of using statistical models as an important tool in support of the fingerprint identification process within the ACE-V framework. In this paper, we introduce a new Likelihood Ratio (LR) model based on Support Vector Machines (SVMs) trained with features discovered via morphometric and spatial analyses of corresponding minutiae configurations for both match and close non-match populations often found in AFIS candidate lists. Computed LR values are derived from a probabilistic framework based on SVMs that discover the intrinsic spatial differences of match and close non-match populations. Lastly, experimentation performed on a set of over 120,000 publicly available fingerprint images (mostly sourced from the National Institute of Standards and Technology (NIST) datasets) and a distortion set of approximately 40,000 images, is presented, illustrating that the proposed LR model is reliably guiding towards the right proposition in the identification assessment of match and close non-match populations. Results further indicate that the proposed model is a promising tool for fingerprint practitioners to use for analysing the spatial consistency of corresponding minutiae configurations.

  3. HLA genes in Lamas Peruvian-Amazonian Amerindians.

    Science.gov (United States)

    Moscoso, Juan; Seclen, Segundo; Serrano-Vela, Juan I; Villena, A; Martinez-Laso, Jorge; Zamora, Jorge; Moreno, Almudena; Ira-Cachafeiro, Juan; Arnaiz-Villena, Antonio

    2006-04-01

    The Lamas Amerindians are the Chancas descents who established before 1532 a.d. (Spanish conquest) at Lamas City, Wayku quarter in a Peruvian-Amazonian province (San Martin). The Lamas HLA profile shows significant differences with other Amerindians HLA profile, i.e.: (a) a higher number of newly found haplotypes compared to other studied Amerindian populations, particularly HLA-A*02-B*48-DRB1*0403-DQB1*0302, A*02-B*48-DRB1*0804-DQB1*0402 and A*02-B*40-DRB1*0407-DQB1*0302; (b) a relative high frequency of HLA-DRB1*0901 (a high frequency southern Asian allele) and HLA-B*48 (a Na-Dene, Siberian and Eskimo allele); both alleles are also found frequently in Quechuas and Aymaras, but not in many other (particularly Meso American) Amerindians and (c) correspondence and neighbor-joining dendrogram analyses show that Lamas (Chancas) may have an origin close to Amazonian Indians that later reached the Andean altiplano.

  4. Ecological complexity in a coffee agroecosystem: spatial heterogeneity, population persistence and biological control.

    Directory of Open Access Journals (Sweden)

    Heidi Liere

    Full Text Available BACKGROUND: Spatial heterogeneity is essential for the persistence of many inherently unstable systems such as predator-prey and parasitoid-host interactions. Since biological interactions themselves can create heterogeneity in space, the heterogeneity necessary for the persistence of an unstable system could be the result of local interactions involving elements of the unstable system itself. METHODOLOGY/PRINCIPAL FINDINGS: Here we report on a predatory ladybird beetle whose natural history suggests that the beetle requires the patchy distribution of the mutualism between its prey, the green coffee scale, and the arboreal ant, Azteca instabilis. Based on known ecological interactions and the natural history of the system, we constructed a spatially-explicit model and showed that the clustered spatial pattern of ant nests facilitates the persistence of the beetle populations. Furthermore, we show that the dynamics of the beetle consuming the scale insects can cause the clustered distribution of the mutualistic ants in the first place. CONCLUSIONS/SIGNIFICANCE: From a theoretical point of view, our model represents a novel situation in which a predator indirectly causes a spatial pattern of an organism other than its prey, and in doing so facilitates its own persistence. From a practical point of view, it is noteworthy that one of the elements in the system is a persistent pest of coffee, an important world commodity. This pest, we argue, is kept within limits of control through a complex web of ecological interactions that involves the emergent spatial pattern.

  5. Spatially explicit modeling of habitat dynamics and fish population persistence in an intermittent lowland stream.

    Science.gov (United States)

    Perry, George L W; Bond, Nicholas R

    2009-04-01

    In temperate and arid climate zones many streams and rivers flow intermittently, seasonally contracting to a sequence of isolated pools or waterholes over the dry period, before reconnecting in the wetter parts of the year. This seasonal drying process is central to our understanding of the population dynamics of aquatic organisms such as fish and invertebrates in these systems. However, there is a dearth of empirical data on the temporal dynamics of such populations. We describe a spatially explicit individual-based model (SEIBM) of fish population dynamics in such systems, which we use to explore the long-term population viability of the carp gudgeon Hypseleotris spp. in a lowland stream in southeastern Australia. We explicitly consider the impacts of interannual variability in stream flow, for example, due to drought, on habitat availability and hence population persistence. Our results support observations that these populations are naturally highly variable, with simulated fish population sizes typically varying over four orders of magnitude within a 50-year simulation run. The most sensitive parameters in the model relate to the amount of water (habitat) in the system: annual rainfall, seepage loss from the pools, and the carrying capacity (number of individuals per cubic meter) of the pools as they dry down. It seems likely that temporal source sink dynamics allow the fish populations to persist in these systems, with good years (high rainfall and brief cease-to-flow [CTF] periods) buffering against periods of drought. In dry years during which the stream may contract to very low numbers of pools, each of these persistent pools becomes crucial for the persistence of the population in the system. Climate change projections for this area suggest decreases in rainfall and increased incidence of drought; under these environmental conditions the long-term persistence of these fish populations is uncertain.

  6. Population genetics at three spatial scales of a rare sponge living in fragmented habitats

    Directory of Open Access Journals (Sweden)

    Uriz Maria J

    2010-01-01

    Full Text Available Abstract Background Rare species have seldom been studied in marine habitats, mainly because it is difficult to formally assess the status of rare species, especially in patchy benthic organisms, for which samplings are often assumed to be incomplete and, thus, inappropriate for establishing the real abundance of the species. However, many marine benthic invertebrates can be considered rare, due to the fragmentation and rarity of suitable habitats. Consequently, studies on the genetic connectivity of rare species in fragmented habitats are basic for assessing their risk of extinction, especially in the context of increased habitat fragmentation by human activities. Sponges are suitable models for studying the intra- and inter-population genetic variation of rare invertebrates, as they produce lecitotrophic larvae and are often found in fragmented habitats. Results We investigated the genetic structure of a Mediterranean sponge, Scopalina lophyropoda (Schmidt, using the allelic size variation of seven specific microsatellite loci. The species can be classified as "rare" because of its strict habitat requirements, the low number of individuals per population, and the relatively small size of its distribution range. It also presents a strong patchy distribution, philopatric larval dispersal, and both sexual and asexual reproduction. Classical genetic-variance-based methods (AMOVA and differentiation statistics revealed that the genetic diversity of S. lophyropoda was structured at the three spatial scales studied: within populations, between populations of a geographic region, and between isolated geographic regions, although some stochastic gene flow might occur among populations within a region. The genetic structure followed an isolation-by-distance pattern according to the Mantel test. However, despite philopatric larval dispersal and fission events in the species, no single population showed inbreeding, and the contribution of clonality to the

  7. Resilience of Amazonian landscapes to agricultural intensification

    NARCIS (Netherlands)

    Jakovac, C.C.

    2015-01-01

    ISBN: 978-94-6257-443-4 Author: Catarina C. Jakovac Title: Resilience of Amazonian landscapes to agricultural intensification Swidden cultivation is the traditional agricultural system in riverine Amazonia, which supports local livelihoods and trans

  8. A scaled-up system to evaluate zooplankton spatial avoidance and the population immediate decline concentration.

    Science.gov (United States)

    Rosa, Rita; Materatski, Patrick; Moreira-Santos, Matilde; Sousa, José Paulo; Ribeiro, Rui

    2012-06-01

    Most laboratory tests may underestimate adverse effects in real scenarios of contamination because they imply the forced exposure of organisms to contaminants, thus overlooking the possibility of emigration. Avoidance from contaminants has been observed in several aquatic organisms, and avoidance-based tests have been recommended to be included in risk assessment studies. To reduce uncertainty in the extrapolation of laboratory derived results, the first aim of the present study was to compare both the median avoidance concentration and the lowest-observed-effect gradient (LOEG) values of atrazine for the cladoceran Daphnia magna, between an already developed 1.1-m-long system and a scaled-up system, three times longer. Second, the present study aimed at evaluating the population immediate decline--the proportion of the population that disappears (avoids and, if not, dies)--through the integration of the relationships between lethality and avoidance versus contaminant concentration. Daphnia magna significantly avoided atrazine, during 12-h exposures, with similar results in the original and scaled-up systems. The population immediate decline at the 48-h median lethal concentration would be 94%. Even at a concentration eliciting only 5% mortality, the population immediate decline would be over 50%. Achieving a higher pertinence of avoidance results and a better understanding of the LOEG values and their time dependence, scaling up the system further both spatially and temporally, and modeling explicit spatial dynamics in exposure and organism movement in space and time are needed.

  9. Spatial capture-recapture models for jointly estimating population density and landscape connectivity

    Science.gov (United States)

    Royle, J. Andrew; Chandler, Richard B.; Gazenski, Kimberly D.; Graves, Tabitha A.

    2013-01-01

    Population size and landscape connectivity are key determinants of population viability, yet no methods exist for simultaneously estimating density and connectivity parameters. Recently developed spatial capture–recapture (SCR) models provide a framework for estimating density of animal populations but thus far have not been used to study connectivity. Rather, all applications of SCR models have used encounter probability models based on the Euclidean distance between traps and animal activity centers, which implies that home ranges are stationary, symmetric, and unaffected by landscape structure. In this paper we devise encounter probability models based on “ecological distance,” i.e., the least-cost path between traps and activity centers, which is a function of both Euclidean distance and animal movement behavior in resistant landscapes. We integrate least-cost path models into a likelihood-based estimation scheme for spatial capture–recapture models in order to estimate population density and parameters of the least-cost encounter probability model. Therefore, it is possible to make explicit inferences about animal density, distribution, and landscape connectivity as it relates to animal movement from standard capture–recapture data. Furthermore, a simulation study demonstrated that ignoring landscape connectivity can result in negatively biased density estimators under the naive SCR model.

  10. Population genetic structuring in Opisthorchis viverrini over various spatial scales in Thailand and Lao PDR.

    Science.gov (United States)

    Laoprom, Nonglak; Sithithaworn, Paiboon; Andrews, Ross H; Ando, Katsuhiko; Laha, Thewarach; Klinbunga, Sirawut; Webster, Joanne P; Petney, Trevor N

    2012-01-01

    Khon Kaen Province in northeast Thailand is known as a hot spot for opisthorchiasis in Southeast Asia. Preliminary allozyme and mitochondrial DNA haplotype data from within one endemic district in this Province (Ban Phai), indicated substantial genetic variability within Opisthorchis viverrini. Here, we used microsatellite DNA analyses to examine the genetic diversity and population structure of O. viverrini from four geographically close localities in Khon Kaen Province. Genotyping based on 12 microsatellite loci yielded a mean number of alleles per locus that ranged from 2.83 to 3.7 with an expected heterozygosity in Hardy-Weinberg equilibrium of 0.44-0.56. Assessment of population structure by pairwise F(ST) analysis showed inter-population differentiation (Pviverrini over a small spatial scale which is similar to that found at a larger scale. This provides the basis for the investigation of the role of parasite genetic diversity and differentiation in transmission dynamics and control of O. viverrini.

  11. Spatial heterogeneity of soil chemical properties between Haloxylon persicum and Haloxylon ammodendron populations

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Spatial heterogeneity is a ubiquitous feature in natural ecosystems, especially in arid regions. Different species and their discontinuous distribution, accompanied by varied topographic characteristics, result in soil resources distributed differently in different locations, and present significant spatial heterogeneity in desert ecosystems. In this study, conventional and geostatistical methods were used to identify the heterogeneity of soil chemical properties in two desert populations, Haloxylon persicum Bunge ex Boss., which dominates on the slopes and tops of sand dunes and Haloxylon ammodendron (C. A. Mey.) Bunge, which inhabits interdunes in the Gurbantunggut Desert of Xinjiang, China. The results showed that soil pH, electrical conductivity (EC), soil organic carbon (SOC), available nitrogen (AN) and available phosphorus (AP) were significantly higher in H. ammodendron populations than that in H. persicum. The coefficient of variation (CV) indicated that (1) most parameters presented a moderate degree of variability (10% < CV < 100%) except pH in both plots, (2) the variability of soil pH, EC and AP in H. ammodendron populations was higher than that in H. persicum populations, and (3) SOC and AN in H. ammodendron populations were lower than that in H. persicum populations. Geostatistical analysis revealed a strong spatial dependence (C0/(C0+C) < 25%) within the distance of ranges for all tested parameters in both plots. The Kriging-interpolated figures showed that the soil spatial distribution was correlated with the vegetation distribution, individual size of plants, and the topographic features, especially with the plants nearest to sampling points and the topographic features. In each plot, soil EC, SOC, AN and AP presented similar distributions, and fertile islands and salt islands occurred in both plots but did not affect every individual plant, since the sampling distance was larger than the size of such fertile islands. The results of topographic

  12. Spatial heterogeneity of soil chemical properties between Haloxylon persicum and Haloxylon mmodendron populations

    Institute of Scientific and Technical Information of China (English)

    CongJuan LI; Yan LI; Jian MA; LianLian FAN; QinXue WANG

    2010-01-01

    Spatial heterogeneity is a ubiquitous feature in natural ecosystems,especially in arid regions.Different species and their discontinuous distribution,accompanied by varied topographic characteristics,result in soil resources distributed differently in different locations,and present significant spatial heterogeneity in desert ecosystems.In this study,conventional and geostatistical methods were used to identify the heterogeneity of soil chemical properties in two desert populations,Haloxylon persicum Bunge ex Boss.,which dominates on the slopes and tops of sand dunes and Haloxylon ammodendron (C.A.Mey.) Bunge,which inhabits interdunes in the Gurbantunggut Desert of Xinjiang,China.The results showed that soil pH,electrical conductivity (EC),soil organic carbon (SOC),available nitrogen (AN) and available phosphorus (AP) were significantly higher in H.ammodendron populations than that in H.persicum.The coefficient of variation (CV) indicated that (1) most parameters presented a moderate degree of variability (10%<CV<100%) except pH in both plots,(2) the variability of soil pH,EC and AP in H.ammodendron populations was higher than that in H.persicum populations,and (3) SOC and AN in H.ammodendron populations were lower than that in H.persicurn populations.Geostatistical analysis revealed a strong spatial dependence (Co/(Co+C)<25%) within the distance of ranges for all tested parameters in both plots.The Kriging-interpolated figures showed that the soil spatial distribution was correlated with the vegetation distribution,individual size of plants,and the topographic features,especially with the plants nearest to sampling points and the topographic features.In each plot,soil EC,SOC,AN and AP presented similar distributions,and fertile islands and salt islands occurred in both plots but did not affect every individual plant,since the sampling distance was larger than the size of such fertile islands.The results of topographic effects on soil heterogeneity suggested

  13. Spatial analysis of cattle and shoat population in Ethiopia: growth trend, distribution and market access.

    Science.gov (United States)

    Leta, Samson; Mesele, Frehiwot

    2014-01-01

    The livestock subsector has an enormous contribution to Ethiopia's national economy and livelihoods of many Ethiopians. The subsector contributes about 16.5% of the national Gross Domestic Product (GDP) and 35.6% of the agricultural GDP. It also contributes 15% of export earnings and 30% of agricultural employment. The livestock subsector currently support and sustain livelihoods for 80% of all rural population. The GDP of livestock related activities valued at 59 billion birr. Ethiopian livestock population trends, distribution and marketing vary considerably across space and time due to a variety of reasons. This study was aimed to assess cattle and shoat population growth trend, distribution and their access to market. Regression analysis was used to assess the cattle and shoat population growth trend and Geographic Information Systems (GIS) techniques were used to determine the spatial distribution of cattle and shoats, and their relative access to market. The data sets used are agricultural census (2001/02) and annual CSA agricultural sample survey (1995/96 to 2012/13). In the past eighteen years, the livestock population namely cattle, sheep and goat grew from 54.5 million to over 103.5 million with average annual increment of 3.4 million. The current average national cattle, sheep and goat population per km(2) are estimated to be 71, 33 and 29 respectively (excluding Addis Ababa, Afar and Somali regions). From the total livestock population the country owns about 46% cattle, 43% sheep and 40% goats are reared within 10 km radius from major livestock market centres and all-weather roads. On the other hand, three fourth of the country's land mass which comprises 15% of the cattle, 20% of the sheep and 21% of goat population is not accessible to market (greater than 30 km from major livestock market centres). It is found that the central highland regions account for the largest share of livestock population and also more accessible to market. Defining the

  14. Spatial and temporal variability of the Glossina palpalis palpalis population in the Mbini focus (Equatorial Guinea

    Directory of Open Access Journals (Sweden)

    Nzambo-Ondo Sisinio

    2007-08-01

    Full Text Available Abstract Background Human African Trypanosomiasis is a vector-borne parasitic disease. The geographical distribution of the disease is linked to the spatial distribution of the tsetse fly. As part of a control campaign using traps, the spatial and temporal variability is analysed of the glossina populations present in the Mbini sleeping sickness foci (Equatorial Guinea. Results A significant drop in the annual mean of the G. p. palpalis apparent density was noted from 2004 to 2005, although seasonal differences were not observed. The apparent density (AD of G. p. palpalis varies significantly from one biotope to another. The fish dryers turned out to be zones with the greatest vector density, although the AD of G. p. palpalis fell significantly in all locations from 2004 to 2005. Conclusion Despite the tsetse fly density being relatively low in fish dryers and jetties, the population working in those zones would be more exposed to infection. The mono-pyramidal traps in the Mbini focus have been proven to be a useful tool to control G. p. palpalis, even though the activity on the banks of the River Wele needs to be intensified. The application of spatial analysis techniques and geographical information systems are very useful tools to discriminate zones with high and low apparent density of G. p. palpalis, probably associated with different potential risk of sleeping sickness transmission.

  15. The spatial structure of stimuli shapes the timescale of correlations in population spiking activity.

    Science.gov (United States)

    Litwin-Kumar, Ashok; Chacron, Maurice J; Doiron, Brent

    2012-01-01

    Throughout the central nervous system, the timescale over which pairs of neural spike trains are correlated is shaped by stimulus structure and behavioral context. Such shaping is thought to underlie important changes in the neural code, but the neural circuitry responsible is largely unknown. In this study, we investigate a stimulus-induced shaping of pairwise spike train correlations in the electrosensory system of weakly electric fish. Simultaneous single unit recordings of principal electrosensory cells show that an increase in the spatial extent of stimuli increases correlations at short (≈ 10 ms) timescales while simultaneously reducing correlations at long (≈ 100 ms) timescales. A spiking network model of the first two stages of electrosensory processing replicates this correlation shaping, under the assumptions that spatially broad stimuli both saturate feedforward afferent input and recruit an open-loop inhibitory feedback pathway. Our model predictions are experimentally verified using both the natural heterogeneity of the electrosensory system and pharmacological blockade of descending feedback projections. For weak stimuli, linear response analysis of the spiking network shows that the reduction of long timescale correlation for spatially broad stimuli is similar to correlation cancellation mechanisms previously suggested to be operative in mammalian cortex. The mechanism for correlation shaping supports population-level filtering of irrelevant distractor stimuli, thereby enhancing the population response to relevant prey and conspecific communication inputs.

  16. The spatial structure of stimuli shapes the timescale of correlations in population spiking activity.

    Directory of Open Access Journals (Sweden)

    Ashok Litwin-Kumar

    Full Text Available Throughout the central nervous system, the timescale over which pairs of neural spike trains are correlated is shaped by stimulus structure and behavioral context. Such shaping is thought to underlie important changes in the neural code, but the neural circuitry responsible is largely unknown. In this study, we investigate a stimulus-induced shaping of pairwise spike train correlations in the electrosensory system of weakly electric fish. Simultaneous single unit recordings of principal electrosensory cells show that an increase in the spatial extent of stimuli increases correlations at short (≈ 10 ms timescales while simultaneously reducing correlations at long (≈ 100 ms timescales. A spiking network model of the first two stages of electrosensory processing replicates this correlation shaping, under the assumptions that spatially broad stimuli both saturate feedforward afferent input and recruit an open-loop inhibitory feedback pathway. Our model predictions are experimentally verified using both the natural heterogeneity of the electrosensory system and pharmacological blockade of descending feedback projections. For weak stimuli, linear response analysis of the spiking network shows that the reduction of long timescale correlation for spatially broad stimuli is similar to correlation cancellation mechanisms previously suggested to be operative in mammalian cortex. The mechanism for correlation shaping supports population-level filtering of irrelevant distractor stimuli, thereby enhancing the population response to relevant prey and conspecific communication inputs.

  17. Density estimation in a wolverine population using spatial capture-recapture models

    Science.gov (United States)

    Royle, J. Andrew; Magoun, Audrey J.; Gardner, Beth; Valkenbury, Patrick; Lowell, Richard E.; McKelvey, Kevin

    2011-01-01

    Classical closed-population capture-recapture models do not accommodate the spatial information inherent in encounter history data obtained from camera-trapping studies. As a result, individual heterogeneity in encounter probability is induced, and it is not possible to estimate density objectively because trap arrays do not have a well-defined sample area. We applied newly-developed, capture-recapture models that accommodate the spatial attribute inherent in capture-recapture data to a population of wolverines (Gulo gulo) in Southeast Alaska in 2008. We used camera-trapping data collected from 37 cameras in a 2,140-km2 area of forested and open habitats largely enclosed by ocean and glacial icefields. We detected 21 unique individuals 115 times. Wolverines exhibited a strong positive trap response, with an increased tendency to revisit previously visited traps. Under the trap-response model, we estimated wolverine density at 9.7 individuals/1,000-km2(95% Bayesian CI: 5.9-15.0). Our model provides a formal statistical framework for estimating density from wolverine camera-trapping studies that accounts for a behavioral response due to baited traps. Further, our model-based estimator does not have strict requirements about the spatial configuration of traps or length of trapping sessions, providing considerable operational flexibility in the development of field studies.

  18. Dispersal and population structure at different spatial scales in the subterranean rodent Ctenomys australis

    Directory of Open Access Journals (Sweden)

    Kittlein Marcelo J

    2010-01-01

    Full Text Available Abstract Background The population genetic structure of subterranean rodent species is strongly affected by demographic (e.g. rates of dispersal and social structure and stochastic factors (e.g. random genetic drift among subpopulations and habitat fragmentation. In particular, gene flow estimates at different spatial scales are essential to understand genetic differentiation among populations of a species living in a highly fragmented landscape. Ctenomys australis (the sand dune tuco-tuco is a territorial subterranean rodent that inhabits a relatively secure, permanently sealed burrow system, occurring in sand dune habitats on the coastal landscape in the south-east of Buenos Aires province, Argentina. Currently, this habitat is threatened by urban development and forestry and, therefore, the survival of this endemic species is at risk. Here, we assess population genetic structure and patterns of dispersal among individuals of this species at different spatial scales using 8 polymorphic microsatellite loci. Furthermore, we evaluate the relative importance of sex and habitat configuration in modulating the dispersal patterns at these geographical scales. Results Our results show that dispersal in C. australis is not restricted at regional spatial scales (~ 4 km. Assignment tests revealed significant population substructure within the study area, providing support for the presence of two subpopulations from three original sampling sites. Finally, male-biased dispersal was found in the Western side of our study area, but in the Eastern side no apparent philopatric pattern was found, suggesting that in a more continuous habitat males might move longer distances than females. Conclusions Overall, the assignment-based approaches were able to detect population substructure at fine geographical scales. Additionally, the maintenance of a significant genetic structure at regional (~ 4 km and small (less than 1 km spatial scales despite apparently

  19. Local spatial and temporal factors influencing population and societal vulnerability to natural disasters.

    Science.gov (United States)

    Zhou, Yang; Li, Ning; Wu, Wenxiang; Wu, Jidong; Shi, Peijun

    2014-04-01

    The identification of societal vulnerable counties and regions and the factors contributing to social vulnerability are crucial for effective disaster risk management. Significant advances have been made in the study of social vulnerability over the past two decades, but we still know little regarding China's societal vulnerability profiles, especially at the county level. This study investigates the county-level spatial and temporal patterns in social vulnerability in China from 1980 to 2010. Based on China's four most recent population censuses of 2,361 counties and their corresponding socioeconomic data, a social vulnerability index for each county was created using factor analysis. Exploratory spatial data analysis, including global and local autocorrelations, was applied to reveal the spatial patterns of county-level social vulnerability. The results demonstrate that the dynamic characteristics of China's county-level social vulnerability are notably distinct, and the dominant contributors to societal vulnerability for all of the years studied were rural character, development (urbanization), and economic status. The spatial clustering patterns of social vulnerability to natural disasters in China exhibited a gathering-scattering-gathering pattern over time. Further investigations indicate that many counties in the eastern coastal area of China are experiencing a detectable increase in social vulnerability, whereas the societal vulnerability of many counties in the western and northern areas of China has significantly decreased over the past three decades. These findings will provide policymakers with a sound scientific basis for disaster prevention and mitigation decisions.

  20. Spatially resolved stellar population parameters in the BCGs of two fossil groups

    CERN Document Server

    Proctor, Robert N; Eigenthaler, Paul

    2014-01-01

    We report the results of Gemini/GMOS long-slit spectroscopic observations along the major and minor axes of the central galaxies in two fossil groups, SDSS J073422.21+265133.9 and SDSS J075828.11+374711.8 (the NGC 2484 group). Spatially resolved kinematics and stellar population parameters (ages, metallicities and $\\alpha$-element abundance ratios) derived using ~20 Lick indices are presented. Despite remarkable similarities in their morphologies, photometric properties (luminosity and colour) and kinematics, the two galaxies exhibit significantly different stellar population parameters. SDSS J073422.21+265133.9 exhibits a strong metallicity gradient (Delta[Z/H]/Delta R ~ -0.4) all the way into the centre of the galaxy. It also exhibits an age profile that suggest a relatively recent, centrally concentrated burst of star formation superimposed on an older, more spatially extended population. NGC 2484, a well known X-ray AGN, exhibits a flat core-like structure in its metallicity gradient, but no detectable ag...

  1. Spatial and Temporal Changes of Floating Population in China Between 1990 and 2000

    Institute of Scientific and Technical Information of China (English)

    LIU Chen; Kuninori OTSUBO; WANG Qinxue; Toshiaki ICHINOSE; Sadao ISHIMURA

    2007-01-01

    By studying the county-level census data of 1990 and 2000, we analyzed the spatial and temporal changes in the floating population in China between 1990 and 2000. The results of the analysis revealed the following characteristics. First, the spatial distribution of the migrants (referred to as 'floaters' in this paper) became increasingly concentrated in the cities during the 1990s. Second, the number of floaters increased rapidly during this period, and the area in which the floaters settled expanded quickly into four population explosion belts: the coast, the Changjiang River Delta, the Beijing-Guangzhou Railway and national border belts. Third, the number of inter-province floaters increased rapidly and exceeded that of intra-province floaters in the 1990s. In addition, to obtain a quantitative relationship between the number of floaters and 10 socio-economic variables by using statistical methods and also to find the chiefly important pulling factors of the migration destination, the authors selected approximately 100 cities with the largest population of floaters. Consequently, we found that four factors GDP, passenger trips per 10,000 persons, per capita GDP and foreign direct investment could provide an explanation for 83.7% of the number of floaters in 2000. The GDP showed the highest correlation with the number of floaters, suggesting that a highly developed economy is the most important factor that attracts floaters. Furthermore, a fairly close relationship between the number of floaters and the GDP was also found in 2000 for all the counties.

  2. Spatial Modeling of Indian Agriculture, Economic Activity and Population under Climate Change

    Science.gov (United States)

    McCord, G. C.

    2010-12-01

    We present a spatial model of economic activity and human population built on physical geography that takes particular account of its effects through agricultural productivity and transport costs for trade. A major component of this work is an agricultural model, driven in part by high-resolution climate data and model output. We put forward India as the initial region for this modeling work; India is a relatively data-rich country, it exhibits significant within-country spatial and temporal variation in agricultural productivity, urbanization rates, and population growth rates, and the climate dynamics of the monsoon are well-studied and expected to change on decadal time scales. Agricultural productivity is modeled as a function of soil, climate, and technology variables. Farmers locate optimally given varying geography and transport costs; in turn, food availability defines urbanization rates and economic activity in non-agricultural sectors. This “social system” integrated assessment model is a step towards a valuable policy tool, but requires a significant mobilization of data and a grid-cell-level system of equations to describe the underlying dynamics of the model. We test against past trends of social-natural system progression in demography, human location, income, food production, etc., and argue that the model could be used to assess future trends under varying climate change scenarios, and eventually serve to model feedbacks through effects on migration, population growth rates, or economic activity.

  3. Modeling spatial competition for light in plant populations with the porous medium equation.

    Science.gov (United States)

    Beyer, Robert; Etard, Octave; Cournède, Paul-Henry; Laurent-Gengoux, Pascal

    2015-02-01

    We consider a plant's local leaf area index as a spatially continuous variable, subject to particular reaction-diffusion dynamics of allocation, senescence and spatial propagation. The latter notably incorporates the plant's tendency to form new leaves in bright rather than shaded locations. Applying a generalized Beer-Lambert law allows to link existing foliage to production dynamics. The approach allows for inter-individual variability and competition for light while maintaining robustness-a key weakness of comparable existing models. The analysis of the single plant case leads to a significant simplification of the system's key equation when transforming it into the well studied porous medium equation. Confronting the theoretical model to experimental data of sugar beet populations, differing in configuration density, demonstrates its accuracy.

  4. The CALIFA survey across the Hubble sequence: Spatially resolved stellar population properties in galaxies

    CERN Document Server

    Delgado, R M González; Pérez, E; Fernandes, R Cid; de Amorim, A L; Cortijo-Ferrero, C; Lacerda, E A D; Fernández, R López; Vale-Asari, N; Sánchez, S F; Mollá, M; Ruiz-Lara, T; Sánchez-Blázquez, P; Walcher, C J; Alves, J; Aguerri, J A L; Bekeraité, S; Bland-Hawthorn, J; Galbany, L; Gallazzi, A; Husemann, B; Iglesias-Páramo, J; Kalinova, V; López-Sánchez, A R; Marino, R A; Márquez, I; Masegosa, J; Mast, D; Méndez-Abreu, J; Mendoza, A; del Olmo, A; Pérez, I; Quirrenbach, A; Zibetti, S

    2015-01-01

    This paper characterizes the radial structure of stellar population properties of galaxies in the nearby universe, based on 300 galaxies from the CALIFA survey. The sample covers a wide range of Hubble types, and galaxy stellar mass. We apply the spectral synthesis techniques to recover the stellar mass surface density, stellar extinction, light and mass-weighted ages, and mass-weighted metallicity, for each spatial resolution element in our target galaxies. To study mean trends with overall galaxy properties, the individual radial profiles are stacked in seven bins of galaxy morphology. We confirm that more massive galaxies are more compact, older, more metal rich, and less reddened by dust. Additionally, we find that these trends are preserved spatially with the radial distance to the nucleus. Deviations from these relations appear correlated with Hubble type: earlier types are more compact, older, and more metal rich for a given mass, which evidences that quenching is related to morphology, but not driven ...

  5. How individual movement response to habitat edges affects population persistence and spatial spread.

    Science.gov (United States)

    Maciel, Gabriel Andreguetto; Lutscher, Frithjof

    2013-07-01

    How individual-level movement decisions in response to habitat edges influence population-level patterns of persistence and spread of a species is a major challenge in spatial ecology and conservation biology. Here, we integrate novel insights into edge behavior, based on habitat preference and movement rates, into spatially explicit growth-dispersal models. We demonstrate how crucial ecological quantities (e.g., minimal patch size, spread rate) depend critically on these individual-level decisions. In particular, we find that including edge behavior properly in these models gives qualitatively different and intuitively more reasonable results than those of some previous studies that did not consider this level of detail. Our results highlight the importance of new empirical work on individual movement response to habitat edges.

  6. An Updating System for the Gridded Population Database of China Based on Remote Sensing, GIS and Spatial Database Technologies

    Directory of Open Access Journals (Sweden)

    Xiaohuan Yang

    2009-02-01

    Full Text Available The spatial distribution of population is closely related to land use and land cover (LULC patterns on both regional and global scales. Population can be redistributed onto geo-referenced square grids according to this relation. In the past decades, various approaches to monitoring LULC using remote sensing and Geographic Information Systems (GIS have been developed, which makes it possible for efficient updating of geo-referenced population data. A Spatial Population Updating System (SPUS is developed for updating the gridded population database of China based on remote sensing, GIS and spatial database technologies, with a spatial resolution of 1 km by 1 km. The SPUS can process standard Moderate Resolution Imaging Spectroradiometer (MODIS L1B data integrated with a Pattern Decomposition Method (PDM and an LULC-Conversion Model to obtain patterns of land use and land cover, and provide input parameters for a Population Spatialization Model (PSM. The PSM embedded in SPUS is used for generating 1 km by 1 km gridded population data in each population distribution region based on natural and socio-economic variables. Validation results from finer township-level census data of Yishui County suggest that the gridded population database produced by the SPUS is reliable.

  7. Population genetic structuring in Opisthorchis viverrini over various spatial scales in Thailand and Lao PDR.

    Directory of Open Access Journals (Sweden)

    Nonglak Laoprom

    Full Text Available Khon Kaen Province in northeast Thailand is known as a hot spot for opisthorchiasis in Southeast Asia. Preliminary allozyme and mitochondrial DNA haplotype data from within one endemic district in this Province (Ban Phai, indicated substantial genetic variability within Opisthorchis viverrini. Here, we used microsatellite DNA analyses to examine the genetic diversity and population structure of O. viverrini from four geographically close localities in Khon Kaen Province. Genotyping based on 12 microsatellite loci yielded a mean number of alleles per locus that ranged from 2.83 to 3.7 with an expected heterozygosity in Hardy-Weinberg equilibrium of 0.44-0.56. Assessment of population structure by pairwise F(ST analysis showed inter-population differentiation (P<0.05 which indicates population substructuring between these localities. Unique alleles were found in three of four localities with the highest number observed per locality being three. Our results highlight the existence of genetic diversity and population substructuring in O. viverrini over a small spatial scale which is similar to that found at a larger scale. This provides the basis for the investigation of the role of parasite genetic diversity and differentiation in transmission dynamics and control of O. viverrini.

  8. Effective spatial scales for evaluating environmental determinants of population density in Yakushima macaques.

    Science.gov (United States)

    Agetsuma, Naoki; Koda, Ryosuke; Tsujino, Riyou; Agetsuma-Yanagihara, Yoshimi

    2015-02-01

    Population densities of wildlife species tend to be correlated with resource productivity of habitats. However, wildlife density has been greatly modified by increasing human influences. For effective conservation, we must first identify the significant factors that affect wildlife density, and then determine the extent of the areas in which the factors should be managed. Here, we propose a protocol that accomplishes these two tasks. The main threats to wildlife are thought to be habitat alteration and hunting, with increases in alien carnivores being a concern that has arisen recently. Here, we examined the effect of these anthropogenic disturbances, as well as natural factors, on the local density of Yakushima macaques (Macaca fuscata yakui). We surveyed macaque densities at 30 sites across their habitat using data from 403 automatic cameras. We quantified the effect of natural vegetation (broad-leaved forest, mixed coniferous/broad-leaved forest, etc.), altered vegetation (forestry area and agricultural land), hunting pressure, and density of feral domestic dogs (Canis familiaris). The effect of each vegetation type was analyzed at numerous spatial scales (between 150 and 3,600-m radii from the camera locations) to determine the best scale for explaining macaque density (effective spatial scale). A model-selection procedure (generalized linear mixed model) was used to detect significant factors affecting macaque density. We detected that the most effective spatial scale was 400 m in radius, a scale that corresponded to group range size of the macaques. At this scale, the amount of broad-leaved forest was selected as a positive factor, whereas mixed forest and forestry area were selected as negative factors for macaque density. This study demonstrated the importance of the simultaneous evaluation of all possible factors of wildlife population density at the appropriate spatial scale.

  9. Diverse Early Life-History Strategies in Migratory Amazonian Catfish: Implications for Conservation and Management.

    Directory of Open Access Journals (Sweden)

    Jens C Hegg

    Full Text Available Animal migrations provide important ecological functions and can allow for increased biodiversity through habitat and niche diversification. However, aquatic migrations in general, and those of the world's largest fish in particular, are imperiled worldwide and are often poorly understood. Several species of large Amazonian catfish carry out some of the longest freshwater fish migrations in the world, travelling from the Amazon River estuary to the Andes foothills. These species are important apex predators in the main stem rivers of the Amazon Basin and make up the region's largest fishery. They are also the only species to utilize the entire Amazon Basin to complete their life cycle. Studies indicate both that the fisheries may be declining due to overfishing, and that the proposed and completed dams in their upstream range threaten spawning migrations. Despite this, surprisingly little is known about the details of these species' migrations, or their life history. Otolith microchemistry has been an effective method for quantifying and reconstructing fish migrations worldwide across multiple spatial scales and may provide a powerful tool to understand the movements of Amazonian migratory catfish. Our objective was to describe the migratory behaviors of the three most populous and commercially important migratory catfish species, Dourada (Brachyplatystoma rousseauxii, Piramutaba (Brachyplatystoma vaillantii, and Piraíba (Brachyplatystoma filamentosum. We collected fish from the mouth of the Amazon River and the Central Amazon and used strontium isotope signatures ((87Sr/(86Sr recorded in their otoliths to determine the location of early rearing and subsequent. Fish location was determined through discriminant function classification, using water chemistry data from the literature as a training set. Where water chemistry data was unavailable, we successfully in predicted (87Sr/(86Sr isotope values using a regression-based approach that related

  10. Effects of Sand Dune Stabilization on the Spatial Pattern of Artemisia ordosica Population in Mu Us Desert, Northwest China.

    Science.gov (United States)

    Zhang, Jiachen; Zhang, Yuqing; Fan, Dongqing; Qin, Shugao; Jia, Xin; Wu, Bin; Chen, Dong; Gao, Hao; Zhu, Linfeng

    2015-01-01

    Vegetation patterns are strongly influenced by sand mobility in desert ecosystems. However, little is known about the spatial patterns of Artemisia ordosica, a dominant shrub in the Mu Us desert of Northwest China, in relation to sand fixation. The aim of this study was to investigate and contrast the effects of sand dune stabilization on the population and spatial distribution of this desert shrub. Spatial autocorrelation, semi-variance analysis, and point-pattern analysis were used jointly in this study to investigate the spatial patterns of A. ordosica populations on dunes in Yanchi County of Ningxia, China. The results showed that the spatial autocorrelation and spatial heterogeneity declined gradually, and the distance between the clustered individuals shortened following sand dune fixation. Seedlings were more aggregated than adults in all stage of dune stabilization, and both were more aggregated on shifting sand dunes separately. Spatial associations of the seedlings with the adults were mostly positive at distances of 0-5 m in shifting sand dunes, and the spatial association changed from positive to neutral in semi-fixed sand dunes. The seedlings were spaced in an almost random pattern around the adults, and their distances from the adults did not seem to affect their locations in semi-fixed sand dunes. Furthermore, spatial associations of the seedlings with the adults were negative in the fixed sand dune. These findings demonstrate that sand stabilization is an important factor affecting the spatial patterns of A. ordosica populations in the Mu Us desert. These findings suggest that, strong association between individuals may be the mechanism to explain the spatial pattern formation at preliminary stage of dune fixation. Sand dune stabilization can change the spatial pattern of shrub population by weakening the spatial association between native shrub individuals, which may affect the development direction of desert shrubs.

  11. Dynamical quorum sensing and clustering dynamics in a population of spatially distributed active rotators

    Science.gov (United States)

    Sakaguchi, Hidetsugu; Maeyama, Satomi

    2013-02-01

    A model of clustering dynamics is proposed for a population of spatially distributed active rotators. A transition from excitable to oscillatory dynamics is induced by the increase of the local density of active rotators. It is interpreted as dynamical quorum sensing. In the oscillation regime, phase waves propagate without decay, which generates an effectively long-range interaction in the clustering dynamics. The clustering process becomes facilitated and only one dominant cluster appears rapidly as a result of the dynamical quorum sensing. An exact localized solution is found to a simplified model equation, and the competitive dynamics between two localized states is studied numerically.

  12. Spatially-resolved stellar populations of nearby galaxies in multi-filter surveys

    Science.gov (United States)

    San Roman, Izaskun; Cenarro, A. Javier; Díaz-García, Luis A.; López-Sanjuan, Carlos; Varela, Jesús; J-PLUS Team

    2017-03-01

    We have developed a new technique using a novel approach to analyze unresolved stellar populations of spatially-resolved galaxies based on large sky multi-filter surveys. We have successfully applied this technique to 42 early-type galaxies in the ALHAMBRA survey. In agreement with some previous work, we find the gradients of early-type galaxies to be on average slightly positive in age and negative in metallicity at large radii (R > Reff). These mildly negative metallicity gradients support a merging scenario. The positive/flat age gradients could support a more uniformly distributed star formation or even secondary burst triggered by mergers.

  13. Spatial-social differentiation and migration characteristics of the employed population in Belgrade

    Directory of Open Access Journals (Sweden)

    Ratkaj Ivan

    2012-01-01

    Full Text Available This article explains the genesis, effects of different factors (historical, economic, political- strategic, urban planning ones, and dynamics of spatial-social differentiation of the employed population in Belgrade. Special attention is paid to analysis of recent migration of employees during the period 1991-2002, which corresponds to the initial phase of liberalization of the housing market when financial constraints and subjective preferences of families and households started to act. This analysis represents the basis for scientific forecast of trajectories of socio-residential development of the city. [Projekat Ministarstva nauke Republike Srbije, br. 176017

  14. Population evolution in mutualistic Lotka-Volterra system with spatial diffusion

    Science.gov (United States)

    Wang, Mao-Xiang; Ma, Yu-Qiang

    2014-02-01

    We consider the population dynamics of two species described by the mutualistic Lotka-Volterra model with a +/+ interaction in the presence of spatial diffusions. The results demonstrate that diffusion does not affect the system’s stability but it brings two situations: one is a win-win situation where both species propagate with the same largest speed; in the other situation the aggressive species has two propagating wave fronts and the other species travels with a single slow wave front. Our model may help to understand the evolution of mutualism.

  15. Characterising the spatial dynamics of sympatric Aedes aegypti and Aedes albopictus populations in the Philippines

    Directory of Open Access Journals (Sweden)

    Jennifer Duncombe

    2013-11-01

    Full Text Available Entomological surveillance and control are essential to the management of dengue fever (DF. Hence, understanding the spatial and temporal patterns of DF vectors, Aedes (Stegomyia aegypti (L. and Ae. (Stegomyia albopictus (Skuse, is paramount. In the Philippines, resources are limited and entomological surveillance and control are generally commenced during epidemics, when transmission is difficult to control. Recent improvements in spatial epidemiological tools and methods offer opportunities to explore more efficient DF surveillance and control solutions: however, there are few examples in the literature from resource-poor settings. The objectives of this study were to: (i explore spatial patterns of Aedes populations and (ii predict areas of high and low vector density to inform DF control in San Jose village, Muntinlupa city, Philippines. Fortnightly, adult female Aedes mosquitoes were collected from 50 double-sticky ovitraps (SOs located in San Jose village for the period June-November 2011. Spatial clustering analysis was performed to identify high and low density clusters of Ae. aegypti and Ae. albopictus mosquitoes. Spatial autocorrelation was assessed by examination of semivariograms, and ordinary kriging was undertaken to create a smoothed surface of predicted vector density in the study area. Our results show that both Ae. aegypti and Ae. albopictus were present in San Jose village during the study period. However, one Aedes species was dominant in a given geographic area at a time, suggesting differing habitat preferences and interspecies competition between vectors. Density maps provide information to direct entomological control activities and advocate the development of geographically enhanced surveillance and control systems to improve DF management in the Philippines.

  16. Role of intraspecific competition in the coexistence of mobile populations in spatially extended ecosystems.

    Science.gov (United States)

    Yang, Rui; Wang, Wen-Xu; Lai, Ying-Cheng; Grebogi, Celso

    2010-06-01

    Evolutionary-game based models of nonhierarchical, cyclically competing populations have become paradigmatic for addressing the fundamental problem of species coexistence in spatially extended ecosystems. We study the role of intraspecific competition in the coexistence and find that the competition can strongly promote the coexistence for high individual mobility in the sense that stable coexistence can arise in parameter regime where extinction would occur without the competition. The critical value of the competition rate beyond which the coexistence is induced is found to be independent of the mobility. We derive a theoretical model based on nonlinear partial differential equations to predict the critical competition rate and the boundaries between the coexistence and extinction regions in a relevant parameter space. We also investigate pattern formation and well-mixed spatiotemporal population dynamics to gain further insights into our findings.

  17. From individual spiking neurons to population behavior: Systematic elimination of short-wavelength spatial modes

    Science.gov (United States)

    Steyn-Ross, Moira L.; Steyn-Ross, D. A.

    2016-02-01

    Mean-field models of the brain approximate spiking dynamics by assuming that each neuron responds to its neighbors via a naive spatial average that neglects local fluctuations and correlations in firing activity. In this paper we address this issue by introducing a rigorous formalism to enable spatial coarse-graining of spiking dynamics, scaling from the microscopic level of a single type 1 (integrator) neuron to a macroscopic assembly of spiking neurons that are interconnected by chemical synapses and nearest-neighbor gap junctions. Spiking behavior at the single-neuron scale ℓ ≈10 μ m is described by Wilson's two-variable conductance-based equations [H. R. Wilson, J. Theor. Biol. 200, 375 (1999), 10.1006/jtbi.1999.1002], driven by fields of incoming neural activity from neighboring neurons. We map these equations to a coarser spatial resolution of grid length B ℓ , with B ≫1 being the blocking ratio linking micro and macro scales. Our method systematically eliminates high-frequency (short-wavelength) spatial modes q ⃗ in favor of low-frequency spatial modes Q ⃗ using an adiabatic elimination procedure that has been shown to be equivalent to the path-integral coarse graining applied to renormalization group theory of critical phenomena. This bottom-up neural regridding allows us to track the percolation of synaptic and ion-channel noise from the single neuron up to the scale of macroscopic population-average variables. Anticipated applications of neural regridding include extraction of the current-to-firing-rate transfer function, investigation of fluctuation criticality near phase-transition tipping points, determination of spatial scaling laws for avalanche events, and prediction of the spatial extent of self-organized macrocolumnar structures. As a first-order exemplar of the method, we recover nonlinear corrections for a coarse-grained Wilson spiking neuron embedded in a network of identical diffusively coupled neurons whose chemical synapses have

  18. Spatial and temporal country-wide survey of temephos resistance in Brazilian populations of Aedes aegypti

    Science.gov (United States)

    Chediak, Mateus; G Pimenta, Fabiano; Coelho, Giovanini E; Braga, Ima A; Lima, José Bento P; Cavalcante, Karina Ribeiro LJ; de Sousa, Lindemberg C; de Melo-Santos, Maria Alice V; Macoris, Maria de Lourdes da G; de Araújo, Ana Paula; Ayres, Constância Flávia J; Andrighetti, Maria Teresa M; Gomes, Ricristhi Gonçalves de A; Campos, Kauara B; Guedes, Raul Narciso C

    2016-01-01

    The organophosphate temephos has been the main insecticide used against larvae of the dengue and yellow fever mosquito (Aedes aegypti) in Brazil since the mid-1980s. Reports of resistance date back to 1995; however, no systematic reports of widespread temephos resistance have occurred to date. As resistance investigation is paramount for strategic decision-making by health officials, our objective here was to investigate the spatial and temporal spread of temephos resistance in Ae. aegypti in Brazil for the last 12 years using discriminating temephos concentrations and the bioassay protocols of the World Health Organization. The mortality results obtained were subjected to spatial analysis for distance interpolation using semi-variance models to generate maps that depict the spread of temephos resistance in Brazil since 1999. The problem has been expanding. Since 2002-2003, approximately half the country has exhibited mosquito populations resistant to temephos. The frequency of temephos resistance and, likely, control failures, which start when the insecticide mortality level drops below 80%, has increased even further since 2004. Few parts of Brazil are able to achieve the target 80% efficacy threshold by 2010/2011, resulting in a significant risk of control failure by temephos in most of the country. The widespread resistance to temephos in Brazilian Ae. aegypti populations greatly compromise effective mosquito control efforts using this insecticide and indicates the urgent need to identify alternative insecticides aided by the preventive elimination of potential mosquito breeding sites. PMID:27143489

  19. Using spatial capture–recapture to elucidate population processes and space-use in herpetological studies

    Science.gov (United States)

    Muñoz, David J.; Miller, David A.W.; Sutherland, Chris; Grant, Evan H. Campbell

    2016-01-01

    The cryptic behavior and ecology of herpetofauna make estimating the impacts of environmental change on demography difficult; yet, the ability to measure demographic relationships is essential for elucidating mechanisms leading to the population declines reported for herpetofauna worldwide. Recently developed spatial capture–recapture (SCR) methods are well suited to standard herpetofauna monitoring approaches. Individually identifying animals and their locations allows accurate estimates of population densities and survival. Spatial capture–recapture methods also allow estimation of parameters describing space-use and movement, which generally are expensive or difficult to obtain using other methods. In this paper, we discuss the basic components of SCR models, the available software for conducting analyses, and the experimental designs based on common herpetological survey methods. We then apply SCR models to Red-backed Salamander (Plethodon cinereus), to determine differences in density, survival, dispersal, and space-use between adult male and female salamanders. By highlighting the capabilities of SCR, and its advantages compared to traditional methods, we hope to give herpetologists the resource they need to apply SCR in their own systems.

  20. Direct reciprocity in spatial populations enhances R-reciprocity as well as ST-reciprocity.

    Directory of Open Access Journals (Sweden)

    Kohei Miyaji

    Full Text Available As is well-known, spatial reciprocity plays an important role in facilitating the emergence of cooperative traits, and the effect of direct reciprocity is also obvious for explaining the cooperation dynamics. However, how the combination of these two scenarios influences cooperation is still unclear. In the present work, we study the evolution of cooperation in 2 × 2 games via considering both spatial structured populations and direct reciprocity driven by the strategy with 1-memory length. Our results show that cooperation can be significantly facilitated on the whole parameter plane. For prisoner's dilemma game, cooperation dominates the system even at strong dilemma, where maximal social payoff is still realized. In this sense, R-reciprocity forms and it is robust to the extremely strong dilemma. Interestingly, when turning to chicken game, we find that ST-reciprocity is also guaranteed, through which social average payoff and cooperation is greatly enhanced. This reciprocity mechanism is supported by mean-field analysis and different interaction topologies. Thus, our study indicates that direct reciprocity in structured populations can be regarded as a more powerful factor for the sustainability of cooperation.

  1. Estimating population density and connectivity of American mink using spatial capture-recapture

    Science.gov (United States)

    Fuller, Angela K.; Sutherland, Christopher S.; Royle, Andy; Hare, Matthew P.

    2016-01-01

    Estimating the abundance or density of populations is fundamental to the conservation and management of species, and as landscapes become more fragmented, maintaining landscape connectivity has become one of the most important challenges for biodiversity conservation. Yet these two issues have never been formally integrated together in a model that simultaneously models abundance while accounting for connectivity of a landscape. We demonstrate an application of using capture–recapture to develop a model of animal density using a least-cost path model for individual encounter probability that accounts for non-Euclidean connectivity in a highly structured network. We utilized scat detection dogs (Canis lupus familiaris) as a means of collecting non-invasive genetic samples of American mink (Neovison vison) individuals and used spatial capture–recapture models (SCR) to gain inferences about mink population density and connectivity. Density of mink was not constant across the landscape, but rather increased with increasing distance from city, town, or village centers, and mink activity was associated with water. The SCR model allowed us to estimate the density and spatial distribution of individuals across a 388 km2 area. The model was used to investigate patterns of space usage and to evaluate covariate effects on encounter probabilities, including differences between sexes. This study provides an application of capture–recapture models based on ecological distance, allowing us to directly estimate landscape connectivity. This approach should be widely applicable to provide simultaneous direct estimates of density, space usage, and landscape connectivity for many species.

  2. Spatial and temporal country-wide survey of temephos resistance in Brazilian populations of Aedes aegypti.

    Science.gov (United States)

    Chediak, Mateus; G Pimenta, Fabiano; Coelho, Giovanini E; Braga, Ima A; Lima, José Bento P; Cavalcante, Karina Ribeiro Lj; Sousa, Lindemberg C de; Melo-Santos, Maria Alice V de; Macoris, Maria de Lourdes da G; Araújo, Ana Paula de; Ayres, Constância Flávia J; Andrighetti, Maria Teresa M; Gomes, Ricristhi Gonçalves de A; Campos, Kauara B; Guedes, Raul Narciso C

    2016-05-01

    The organophosphate temephos has been the main insecticide used against larvae of the dengue and yellow fever mosquito (Aedes aegypti) in Brazil since the mid-1980s. Reports of resistance date back to 1995; however, no systematic reports of widespread temephos resistance have occurred to date. As resistance investigation is paramount for strategic decision-making by health officials, our objective here was to investigate the spatial and temporal spread of temephos resistance in Ae. aegypti in Brazil for the last 12 years using discriminating temephos concentrations and the bioassay protocols of the World Health Organization. The mortality results obtained were subjected to spatial analysis for distance interpolation using semi-variance models to generate maps that depict the spread of temephos resistance in Brazil since 1999. The problem has been expanding. Since 2002-2003, approximately half the country has exhibited mosquito populations resistant to temephos. The frequency of temephos resistance and, likely, control failures, which start when the insecticide mortality level drops below 80%, has increased even further since 2004. Few parts of Brazil are able to achieve the target 80% efficacy threshold by 2010/2011, resulting in a significant risk of control failure by temephos in most of the country. The widespread resistance to temephos in Brazilian Ae. aegypti populations greatly compromise effective mosquito control efforts using this insecticide and indicates the urgent need to identify alternative insecticides aided by the preventive elimination of potential mosquito breeding sites.

  3. The spatial and age distribution of stellar populations in DDO 190

    CERN Document Server

    Aparicio, A

    2000-01-01

    The spatial distribution of stellar populations, the star formation history, and other properties of the dIrr galaxy DDO 190 have been analyzed using color--magnitude diagrams (CMDs) of about 3900 resolved stars and the Ha fluxes of HII regions. From the mean color index of the red giant branch, a mean metallicity [Fe/H]=-2.0 is obtained. The I magnitude of the TRGB has been used to estimate the distance. DDO 190 is 2.9+/-0.2 Mpc from the Milky Way, 2.1 Mpc from the M 94 group (CnV-I), 2.4 Mpc from the M 81 group and 2.9 Mpc from the barycenter of the Local Group, all indicating that it is an isolated, field galaxy. The surface-brightness distribution of the galaxy is well fitted by ellipses of ellipticity e=1-a/b=0.1 and P.A.=82deg. The radial star density distribution follows an exponential law of scale length a=43."4, corresponding to 611 pc. The Holmberg semi-major axis to mu_B=26.5 is estimated to be r^B_(26.5)=3.'0. Stellar populations of different ages in DDO 190 show strong spatial decoupling, the old...

  4. The spatial distribution of threats to plant species with extremely small populations

    Science.gov (United States)

    Wang, Chunjing; Zhang, Jing; Wan, Jizhong; Qu, Hong; Mu, Xianyun; Zhang, Zhixiang

    2017-03-01

    Many biological conservationists take actions to conserve plant species with extremely small populations (PSESP) in China; however, there have been few studies on the spatial distribution of threats to PSESP. Hence, we selected distribution data of PSESP and made a map of the spatial distribution of threats to PSESP in China. First, we used the weight assignment method to evaluate the threat risk to PSESP at both country and county scales. Second, we used a geographic information system to map the spatial distribution of threats to PSESP, and explored the threat factors based on linear regression analysis. Finally, we suggested some effective conservation options. We found that the PSESP with high values of protection, such as the plants with high scientific research values and ornamental plants, were threatened by over-exploitation and utilization, habitat fragmentation, and a small sized wild population in broad-leaved forests and bush fallows. We also identified some risk hotspots for PSESP in China. Regions with low elevation should be given priority for ex- and in-situ conservation. Moreover, climate change should be considered for conservation of PSESP. To avoid intensive over-exploitation or utilization and habitat fragmentation, in-situ conservation should be practiced in regions with high temperatures and low temperature seasonality, particularly in the high risk hotspots for PSESP that we proposed. Ex-situ conservation should be applied in these same regions, and over-exploitation and utilization of natural resources should be prevented. It is our goal to apply the concept of PSESP to the global scale in the future.

  5. The spatial distribution of threats to plant species with extremely small populations

    Science.gov (United States)

    Wang, Chunjing; Zhang, Jing; Wan, Jizhong; Qu, Hong; Mu, Xianyun; Zhang, Zhixiang

    2016-04-01

    Many biological conservationists take actions to conserve plant species with extremely small populations (PSESP) in China; however, there have been few studies on the spatial distribution of threats to PSESP. Hence, we selected distribution data of PSESP and made a map of the spatial distribution of threats to PSESP in China. First, we used the weight assignment method to evaluate the threat risk to PSESP at both country and county scales. Second, we used a geographic information system to map the spatial distribution of threats to PSESP, and explored the threat factors based on linear regression analysis. Finally, we suggested some effective conservation options. We found that the PSESP with high values of protection, such as the plants with high scientific research values and ornamental plants, were threatened by over-exploitation and utilization, habitat fragmentation, and a small sized wild population in broad-leaved forests and bush fallows. We also identified some risk hotspots for PSESP in China. Regions with low elevation should be given priority for ex- and in-situ conservation. Moreover, climate change should be considered for conservation of PSESP. To avoid intensive over-exploitation or utilization and habitat fragmentation, in-situ conservation should be practiced in regions with high temperatures and low temperature seasonality, particularly in the high risk hotspots for PSESP that we proposed. Ex-situ conservation should be applied in these same regions, and over-exploitation and utilization of natural resources should be prevented. It is our goal to apply the concept of PSESP to the global scale in the future.

  6. Maximum Regional Emission Reduction Potential in Residential Sector Based on Spatial Distribution of Population and Resources

    Science.gov (United States)

    Winijkul, E.; Bond, T. C.

    2011-12-01

    In the residential sector, major activities that generate emissions are cooking and heating, and fuels ranging from traditional (wood) to modern (natural gas, or electricity) are used. Direct air pollutant emissions from this sector are low when natural gas or electricity are the dominant energy sources, as is the case in developed countries. However, in developing countries, people may rely on solid fuels and this sector can contribute a large fraction of emissions. The magnitude of the health loss associated with exposure to indoor smoke as well as its concentration among rural population in developing countries have recently put preventive measures high on the agenda of international development and public health organizations. This study focuses on these developing regions: Central America, Africa, and Asia. Current and future emissions from the residential sector depend on both fuel and cooking device (stove) type. Availability of fuels, stoves, and interventions depends strongly on spatial distribution. However, regional emission calculations do not consider this spatial dependence. Fuel consumption data is presented at country level, without information about where different types of fuel are used. Moreover, information about stove types that are currently used and can be used in the future is not available. In this study, we first spatially allocate current emissions within residential sector. We use Geographic Information System maps of temperature, electricity availability, forest area, and population to determine the distribution of fuel types and availability of stoves. Within each country, consumption of different fuel types, such as fuelwood, coal, and LPG is distributed among different area types (urban, peri-urban, and rural area). Then, the cleanest stove technologies which could be used in the area are selected based on the constraints of each area, i.e. availability of resources. Using this map, the maximum emission reduction compared with

  7. Multivariate spatial analysis of a heavy rain event in a densely populated delta city

    Science.gov (United States)

    Gaitan, Santiago; ten Veldhuis, Marie-claire; Bruni, Guenda; van de Giesen, Nick

    2014-05-01

    Delta cities account for half of the world's population and host key infrastructure and services for the global economic growth. Due to the characteristic geography of delta areas, these cities face high vulnerability to extreme weather and pluvial flooding risks, that are expected to increase as climate change drives heavier rain events. Besides, delta cities are subjected to fast urban densification processes that progressively make them more vulnerable to pluvial flooding. Delta cities need to be adapted to better cope with this threat. The mechanism leading to damage after heavy rains is not completely understood. For instance, current research has shown that rain intensities and volumes can only partially explain the occurrence and localization of rain-related insurance claims (Spekkers et al., 2013). The goal of this paper is to provide further insights into spatial characteristics of the urban environment that can significantly be linked to pluvial-related flooding impacts. To that end, a study-case has been selected: on October 12 to 14 2013, a heavy rain event triggered pluvial floods in Rotterdam, a densely populated city which is undergoing multiple climate adaptation efforts and is located in the Meuse river Delta. While the average yearly precipitation in this city is around 800 mm, local rain gauge measurements ranged from aprox. 60 to 130 mm just during these three days. More than 600 citizens' telephonic complaints reported impacts related to rainfall. The registry of those complaints, which comprises around 300 calls made to the municipality and another 300 to the fire brigade, was made available for research. Other accessible information about this city includes a series of rainfall measurements with up to 1 min time-step at 7 different locations around the city, ground-based radar rainfall data (1 Km^2 spatial resolution and 5 min time-step), a digital elevation model (50 cm of horizontal resolution), a model of overland-flow paths, cadastral

  8. Extremely long-distance seed dispersal by an overfished Amazonian frugivore.

    Science.gov (United States)

    Anderson, Jill T; Nuttle, Tim; Saldaña Rojas, Joe S; Pendergast, Thomas H; Flecker, Alexander S

    2011-11-22

    Throughout Amazonia, overfishing has decimated populations of fruit-eating fishes, especially the large-bodied characid, Colossoma macropomum. During lengthy annual floods, frugivorous fishes enter vast Amazonian floodplains, consume massive quantities of fallen fruits and egest viable seeds. Many tree and liana species are clearly specialized for icthyochory, and seed dispersal by fish may be crucial for the maintenance of Amazonian wetland forests. Unlike frugivorous mammals and birds, little is known about seed dispersal effectiveness of fishes. Extensive mobility of frugivorous fish could result in extremely effective, multi-directional, long-distance seed dispersal. Over three annual flood seasons, we tracked fine-scale movement patterns and habitat use of wild Colossoma, and seed retention in the digestive tracts of captive individuals. Our mechanistic model predicts that Colossoma disperses seeds extremely long distances to favourable habitats. Modelled mean dispersal distances of 337-552 m and maximum of 5495 m are among the longest ever reported. At least 5 per cent of seeds are predicted to disperse 1700-2110 m, farther than dispersal by almost all other frugivores reported in the literature. Additionally, seed dispersal distances increased with fish size, but overfishing has biased Colossoma populations to smaller individuals. Thus, overexploitation probably disrupts an ancient coevolutionary relationship between Colossoma and Amazonian plants.

  9. The Massive Star Population in M101. II. Spatial Variations in the Recent Star Formation History

    CERN Document Server

    Grammer, Skyler

    2014-01-01

    We investigate the star formation history (SFH) as a function of radius in M101 using archival HST/ACS photometry. We derive the SFH from the resolved stellar populations in five 2' wide annuli. Binning the SFH into time frames corresponding to stellar populations traced by H$\\alpha$, far ultraviolet (FUV), and near ultraviolet (NUV) emission, we find that the fraction of stellar populations young enough to contribute in H$\\alpha$ is 15%-35% in the inner regions, compared to less than 5% in the outer regions. This provides a sufficient explanation for the lack of H$\\alpha$ emission at large radii. We also model the blue to red supergiant ratio in our five annuli, examine the effects that a metallicity gradient and variable SFH have on the predicted ratios, and compare to the observed values. We find that the radial behavior of our modeled blue to red supergiant ratios is highly sensitive to both spatial variations in the SFH and metallicity. Incorporating the derived SFH into modeled ratios, we find that we a...

  10. The Massive Star Population in M101. II. Spatial Variations in the Recent Star Formation History

    Science.gov (United States)

    Grammer, Skyler; Humphreys, Roberta M.

    2014-09-01

    We investigate star formation history (SFH) as a function of radius in M101 using archival Hubble Space Telescope Advanced Camera for Surveys photometry. We derive the SFH from the resolved stellar populations in five 2' wide annuli. Binning the SFH into time frames corresponding to stellar populations traced by Hα, far-ultraviolet, and near-ultraviolet emission, we find that the fraction of stellar populations young enough to contribute in Hα is 15%-35% in the inner regions, compared to less than 5% in the outer regions. This provides a sufficient explanation for the lack of Hα emission at large radii. We also model the blue to red supergiant ratio in our five annuli, examine the effects that a metallicity gradient and variable SFH have on the predicted ratios, and compare to the observed values. We find that the radial behavior of our modeled blue to red supergiant ratios is highly sensitive to both spatial variations in the SFH and metallicity. Incorporating the derived SFH into modeled ratios, we find that we are able to reproduce the observed values at large radii (low metallicity), but at small radii (high metallicity) the modeled and observed ratios are discrepant.

  11. Population genetics of the Eastern Hellbender (Cryptobranchus alleganiensis alleganiensis across multiple spatial scales.

    Directory of Open Access Journals (Sweden)

    Shem D Unger

    Full Text Available Conservation genetics is a powerful tool to assess the population structure of species and provides a framework for informing management of freshwater ecosystems. As lotic habitats become fragmented, the need to assess gene flow for species of conservation management becomes a priority. The eastern hellbender (Cryptobranchus alleganiensis alleganiensis is a large, fully aquatic paedamorphic salamander. Many populations are experiencing declines throughout their geographic range, yet the genetic ramifications of these declines are currently unknown. To this end, we examined levels of genetic variation and genetic structure at both range-wide and drainage (hierarchical scales. We collected 1,203 individuals from 77 rivers throughout nine states from June 2007 to August 2011. Levels of genetic diversity were relatively high among all sampling locations. We detected significant genetic structure across populations (Fst values ranged from 0.001 between rivers within a single watershed to 0.218 between states. We identified two genetically differentiated groups at the range-wide scale: 1 the Ohio River drainage and 2 the Tennessee River drainage. An analysis of molecular variance (AMOVA based on landscape-scale sampling of basins within the Tennessee River drainage revealed the majority of genetic variation (∼94-98% occurs within rivers. Eastern hellbenders show a strong pattern of isolation by stream distance (IBSD at the drainage level. Understanding levels of genetic variation and differentiation at multiple spatial and biological scales will enable natural resource managers to make more informed decisions and plan effective conservation strategies for cryptic, lotic species.

  12. A spatial model of tree α-diversity and tree density for the Amazon

    NARCIS (Netherlands)

    ter Steege, H.; Pitman, N.C.A.; Sabatier, D.; Castellanos, H.; van der Hout, P.; Daly, D.C.; Silveira, M.; Phillips, O.; Vasquez, R.; van Andel, T.; Duivenvoorden, J.; de Oliveira, A.A.; Ek, R.; Lilwah, R.; Thomas, R.; van Essen, J.; Baider, C.; Maas, P.; Mori, S.; Terborgh, J.; Nuñez-Vargas, P.; Mogollón, H.; Morawetz, W.

    2003-01-01

    Large-scale patterns of Amazonian biodiversity have until now been obscured by a sparse and scattered inventory record. Here we present the first comprehensive spatial model of tree α-diversity and tree density in Amazonian rainforests, based on the largest-yet compilation of forest inventories and

  13. Voices of Contact: Politics of Language in Urban Amazonian Ecuador

    Science.gov (United States)

    Wroblewski, Michael

    2010-01-01

    This dissertation is a study of diverse linguistic resources and contentious identity politics among indigenous Amazonian Kichwas in the city of Tena, Ecuador. Tena is a rapidly developing Amazonian provincial capital city with a long history of interethnic and interlinguistic contact. In recent decades, the course of indigenous Kichwa identity…

  14. Commonness of Amazonian palm (Arecaceae) species: Cross-scale links and potential determinants

    Science.gov (United States)

    Kristiansen, Thea; Svenning, Jens-Christian; Grández, César; Salo, Jukka; Balslev, Henrik

    2009-07-01

    The mechanisms that cause variation in commonness (abundances and range sizes) of species remain debated in ecology, and a repeatedly observed pattern is the positive relation between local abundances and larger scale range sizes. We used the Amazonian palm species (Arecaceae) to investigate the dependence between and potential determinants of commonness across three (local, landscape, continental) spatial scales. Commonness at the smaller scales (local abundance, landscape frequency) was estimated using data from 57 transects (5 × 500 m) in primary, non-inundated ( terra firme) rainforest in a western Amazonian landscape, while commonness at the largest scale (continental range size) was estimated from digitized distribution maps. Landscape frequency was positively related to both local abundance and continental range size, which, however, were not related to each other. Landscape frequency was positively related to topographic niche breadth. Stem height correlated with continental range size and was the only species life-history trait related to any commonness measure. Distance from the study area to a species' range centre did not influence any of the commonness measures. The factors determining commonness in the Amazonian palm flora appear to be scale-dependent, with the unrelated local scale abundance and continental range size probably being controlled by different driving factors. Interestingly, commonness at the intermediate, landscape scale seems linked to both the smaller and the larger scale. Our results point towards topographic niche breadth at the smaller scales and stem height, possibly reflecting species' dispersal potential, at the continental scale as important determinants of commonness.

  15. Numerical Solutions of Nonlinear Fractional Partial Differential Equations Arising in Spatial Diffusion of Biological Populations

    Directory of Open Access Journals (Sweden)

    Jagdev Singh

    2014-01-01

    Full Text Available The main aim of this work is to present a user friendly numerical algorithm based on homotopy perturbation Sumudu transform method for nonlinear fractional partial differential arising in spatial diffusion of biological populations in animals. The movements are made generally either by mature animals driven out by invaders or by young animals just reaching maturity moving out of their parental territory to establish breeding territory of their own. The homotopy perturbation Sumudu transform method is a combined form of the Sumudu transform method and homotopy perturbation method. The obtained results are compared with Sumudu decomposition method. The numerical solutions obtained by the proposed method indicate that the approach is easy to implement and accurate. These results reveal that the proposed method is computationally very attractive.

  16. [Spatial correlation of active mounds locative distribution of Solenopsis invicta Buren polygyne populations].

    Science.gov (United States)

    Lu, Yong-yue; Li, Ning-dong; Liang, Guang-wen; Zeng, Ling

    2007-01-01

    By using geostatistic method, this paper studied the spatial distribution patterns of the active mounds of Solenopsis invicta Buren polygyne populations in Wuchuan and Shenzhen, and built up the spherical models of the interval distances and semivariances of the mounds. The semivariograms were described at the two directions of east-west and south-north, which were obviously positively correlated to the interval distances, revealing that the active mounds in locative area were space-dependent. The ranges of the 5 spherical models constructed for 5 sampling plots in Wuchuan were 9.1 m, 7.6 m, 23.5 m, 7.5 m and 14.5 m, respectively, with an average of 12.4 m. The mounds of any two plots in this range were significantly correlated. There was a randomicity in the spatial distribution of active mounds, and the randomicity index (Nugget/Sill) was 0.7034, 0.9247, 0.4398, 1.1196 and 0.4624, respectively. In Shenzhen, the relationships between the interval distances and semivariances were described by 7 spherical models, and the ranges were 14.5 m, 11.2 m, 10.8 m, 17.6 m, 11.3 m, 9.9 m and 12.8 m, respectively, with an average of 12.6 m.

  17. Spatial and temporal evolution of Lassa virus in the natural host population in Upper Guinea.

    Science.gov (United States)

    Fichet-Calvet, Elisabeth; Ölschläger, Stephan; Strecker, Thomas; Koivogui, Lamine; Becker-Ziaja, Beate; Camara, Amara Bongo; Soropogui, Barré; Magassouba, N'Faly; Günther, Stephan

    2016-02-25

    This study aimed at reconstructing the spatial and temporal evolution of Lassa virus (LASV) in the natural host population. To this end, we generated 132 partial nucleoprotein sequences of LASV from M. natalensis trapped in 12 villages around Faranah, Upper Guinea, over a period of 12 years. This study reveals two main features of LASV evolution in M. natalensis. First, the virus evolves in the reservoir with a molecular clock rate of 9 (7-11) × 10(-4) position(-1) year(-1) implying that contemporary LASV lineages circulate in the Faranah area since less than 100 years. Second, viruses circulating in a specific village are diverse and polyphyletic. We observed, however, there are monophyletic clusters at village and sub-village level at specific points in time. In conclusion, our data indicate that the temporal and spatial pattern of LASV evolution in the natural reservoir is characterized by a combination of stationary circulation within a village and virus movement between villages. The latter feature is relevant for rodent control strategies, as it implies that recurrence of the virus from neighbouring villages may occur in villages where the virus has previously been eradicated.

  18. Spatial and seasonal trends of a natural population of Biomphalaria occidentalis in northeastern Argentina

    Directory of Open Access Journals (Sweden)

    Alejandra Rumi

    1992-06-01

    Full Text Available This study aims to analyze the age of a population of Biomphalaria occidentalis on a pound of Riachuelo river basin, wich is one of the three most important Middle Paraná river affluents in Corrientes province. Samples were drawn from three stations, were spatial and temporal numerical variations of the snail, as well as its relation with different environmental parameters, mainly temperature, rainfall, pH and conductivity, were analyzed. Snail abundance is given in number of individuals/hour. The differences between the three sampling stations, estimated by nonparametric tests, was nonsignificant. A relative scale to the greatest shell diameter was employed to build the age pyramids. Temporal fluctuations of snail abundance correlated negatively with the highest monthly accumulated temperatures (P < 0.05. Although different floristic compositions were observed at the three stations, no significant numerical variations were detected in B. occidentalis spatial distribution. Reproductive activity took place between March-April and November with overlapping cohort system. During summer (December-Febuary mortality increased along with temperature and reproductive activity was not evident.

  19. Environmental characteristics drive variation in Amazonian understorey bird assemblages

    Science.gov (United States)

    Magnusson, William E.; Anderson, Marti J.; Schlegel, Martin; Pe’er, Guy; Henle, Klaus

    2017-01-01

    Tropical bird assemblages display patterns of high alpha and beta diversity and, as tropical birds exhibit strong habitat specificity, their spatial distributions are generally assumed to be driven primarily by environmental heterogeneity and interspecific interactions. However, spatial distributions of some Amazonian forest birds are also often restricted by large rivers and other large-scale topographic features, suggesting that dispersal limitation may also play a role in driving species’ turnover. In this study, we evaluated the effects of environmental characteristics, topographic and spatial variables on variation in local assemblage structure and diversity of birds in an old-growth forest in central Amazonia. Birds were mist-netted in 72 plots distributed systematically across a 10,000 ha reserve in each of three years. Alpha diversity remained stable through time, but species composition changed. Spatial variation in bird-assemblage structure was significantly related to environmental and topographic variables but not strongly related to spatial variables. At a broad scale, we found bird assemblages to be significantly distinct between two watersheds that are divided by a central ridgeline. We did not detect an effect of the ridgeline per se in driving these patterns, indicating that most birds are able to fly across it, and that differences in assemblage structure between watersheds may be due to unmeasured environmental variables or unique combinations of measured variables. Our study indicates that complex geography and landscape features can act together with environmental variables to drive changes in the diversity and composition of tropical bird assemblages at local scales, but highlights that we still know very little about what makes different parts of tropical forest suitable for different species. PMID:28225774

  20. Estimating temporal trend in the presence of spatial complexity: A Bayesian hierarchical model for a wetland plant population undergoing restoration

    Science.gov (United States)

    Rodhouse, T.J.; Irvine, K.M.; Vierling, K.T.; Vierling, L.A.

    2011-01-01

    Monitoring programs that evaluate restoration and inform adaptive management are important for addressing environmental degradation. These efforts may be well served by spatially explicit hierarchical approaches to modeling because of unavoidable spatial structure inherited from past land use patterns and other factors. We developed Bayesian hierarchical models to estimate trends from annual density counts observed in a spatially structured wetland forb (Camassia quamash [camas]) population following the cessation of grazing and mowing on the study area, and in a separate reference population of camas. The restoration site was bisected by roads and drainage ditches, resulting in distinct subpopulations ("zones") with different land use histories. We modeled this spatial structure by fitting zone-specific intercepts and slopes. We allowed spatial covariance parameters in the model to vary by zone, as in stratified kriging, accommodating anisotropy and improving computation and biological interpretation. Trend estimates provided evidence of a positive effect of passive restoration, and the strength of evidence was influenced by the amount of spatial structure in the model. Allowing trends to vary among zones and accounting for topographic heterogeneity increased precision of trend estimates. Accounting for spatial autocorrelation shifted parameter coefficients in ways that varied among zones depending on strength of statistical shrinkage, autocorrelation and topographic heterogeneity-a phenomenon not widely described. Spatially explicit estimates of trend from hierarchical models will generally be more useful to land managers than pooled regional estimates and provide more realistic assessments of uncertainty. The ability to grapple with historical contingency is an appealing benefit of this approach.

  1. Likelihood analysis of spatial capture-recapture models for stratified or class structured populations

    Science.gov (United States)

    Royle, J. Andrew; Sutherland, Christopher S.; Fuller, Angela K.; Sun, Catherine C.

    2015-01-01

    We develop a likelihood analysis framework for fitting spatial capture-recapture (SCR) models to data collected on class structured or stratified populations. Our interest is motivated by the necessity of accommodating the problem of missing observations of individual class membership. This is particularly problematic in SCR data arising from DNA analysis of scat, hair or other material, which frequently yields individual identity but fails to identify the sex. Moreover, this can represent a large fraction of the data and, given the typically small sample sizes of many capture-recapture studies based on DNA information, utilization of the data with missing sex information is necessary. We develop the class structured likelihood for the case of missing covariate values, and then we address the scaling of the likelihood so that models with and without class structured parameters can be formally compared regardless of missing values. We apply our class structured model to black bear data collected in New York in which sex could be determined for only 62 of 169 uniquely identified individuals. The models containing sex-specificity of both the intercept of the SCR encounter probability model and the distance coefficient, and including a behavioral response are strongly favored by log-likelihood. Estimated population sex ratio is strongly influenced by sex structure in model parameters illustrating the importance of rigorous modeling of sex differences in capture-recapture models.

  2. Population dynamics and wave propagation in a Lotka-Volterra system with spatial diffusion.

    Science.gov (United States)

    Wang, Mao-Xiang; Lai, Pik-Yin

    2012-11-01

    We consider the competitive population dynamics of two species described by the Lotka-Volterra model in the presence of spatial diffusion. The model is described by the diffusion coefficient (d(α)) and proliferation rate (r(α)) of the species α (α = 1,2 is the species label). Propagating wave front solutions in one dimension are investigated analytically and by numerical solutions. It is found that the wave profiles and wave speeds are determined by the speed parameters, v(α) ≡ 2 sqrt [d(α)r(α)], of the two species, and the phase diagrams for various inter- and intracompetitive scenarios are determined. The steady wave front speeds are obtained analytically via nonlinear dynamics analysis and verified by numerical solutions. The effect of the intermediate stationary state is investigated and propagating wave profiles beyond the simple Fisher wave fronts are revealed. The wave front speed of a species can display abrupt increase as its speed parameter is increased. In particular for the case in which both species are aggressive, our results show that the speed parameter is the deciding factor that determines the ultimate surviving species, in contrast to the case without diffusion in which the final surviving species is decided by its initial population advantage. Possible relations to the biological relevance of modeling cancer development and wound healing are also discussed.

  3. Merger traces in the spatial distribution of stellar populations in the Fornax dSph galaxy

    CERN Document Server

    del Pino, Andrés; Hidalgo, Sebastial L

    2015-01-01

    We present a comprehensive and detailed study of the stellar populations of the Fornax dwarf spheroidal galaxy. We analyse their spatial distributions along the main body of the galaxy, obtaining their surface density maps, together with their radial density profiles. Results are based on the largest and most complete catalogue of stars in Fornax, with more than $3.5\\times10^{5}$ stars covering the main body of the galaxy up to $\\rm V \\sim 24$. We find a differentiated structure in Fornax depending on the stellar ages. Old stars ($\\gtrsim 10$ Gyr) follow an elliptical distribution well fitted by King profiles with relatively large core radius ($r_c = 760\\pm60$ pc). On another hand, young populations ($\\lesssim 3$ Gyr) concentrate in the central region of the galaxy ($r_c = 210\\pm10$ pc), and are better fitted by Sersic profiles with $0.8 < n < 1.2$, indicating some disky shape. These stars show strong asymmetries and substructures not aligned with the main optical axes of Fornax. This together with the ...

  4. Ancient Humans Influenced the Current Spatial Genetic Structure of Common Walnut Populations in Asia.

    Directory of Open Access Journals (Sweden)

    Paola Pollegioni

    Full Text Available Common walnut (Juglans regia L is an economically important species cultivated worldwide for its wood and nuts. It is generally accepted that J. regia survived and grew spontaneously in almost completely isolated stands in its Asian native range after the Last Glacial Maximum. Despite its natural geographic isolation, J. regia evolved over many centuries under the influence of human management and exploitation. We evaluated the hypothesis that the current distribution of natural genetic resources of common walnut in Asia is, at least in part, the product of ancient anthropogenic dispersal, human cultural interactions, and afforestation. Genetic analysis combined with ethno-linguistic and historical data indicated that ancient trade routes such as the Persian Royal Road and Silk Road enabled long-distance dispersal of J. regia from Iran and Trans-Caucasus to Central Asia, and from Western to Eastern China. Ancient commerce also disrupted the local spatial genetic structure of autochthonous walnut populations between Tashkent and Samarkand (Central-Eastern Uzbekistan, where the northern and central routes of the Northern Silk Road converged. A significant association between ancient language phyla and the genetic structure of walnut populations is reported even after adjustment for geographic distances that could have affected both walnut gene flow and human commerce over the centuries. Beyond the economic importance of common walnut, our study delineates an alternative approach for understanding how the genetic resources of long-lived perennial tree species may be affected by the interaction of geography and human history.

  5. Population Density, Climate Variables and Poverty Synergistically Structure Spatial Risk in Urban Malaria in India

    Science.gov (United States)

    Santos-Vega, Mauricio; Bouma, Menno J; Kohli, Vijay; Pascual, Mercedes

    2016-01-01

    Background The world is rapidly becoming urban with the global population living in cities projected to double by 2050. This increase in urbanization poses new challenges for the spread and control of communicable diseases such as malaria. In particular, urban environments create highly heterogeneous socio-economic and environmental conditions that can affect the transmission of vector-borne diseases dependent on human water storage and waste water management. Interestingly India, as opposed to Africa, harbors a mosquito vector, Anopheles stephensi, which thrives in the man-made environments of cities and acts as the vector for both Plasmodium vivax and Plasmodium falciparum, making the malaria problem a truly urban phenomenon. Here we address the role and determinants of within-city spatial heterogeneity in the incidence patterns of vivax malaria, and then draw comparisons with results for falciparum malaria. Methodology/principal findings Statistical analyses and a phenomenological transmission model are applied to an extensive spatio-temporal dataset on cases of Plasmodium vivax in the city of Ahmedabad (Gujarat, India) that spans 12 years monthly at the level of wards. A spatial pattern in malaria incidence is described that is largely stationary in time for this parasite. Malaria risk is then shown to be associated with socioeconomic indicators and environmental parameters, temperature and humidity. In a more dynamical perspective, an Inhomogeneous Markov Chain Model is used to predict vivax malaria risk. Models that account for climate factors, socioeconomic level and population size show the highest predictive skill. A comparison to the transmission dynamics of falciparum malaria reinforces the conclusion that the spatio-temporal patterns of risk are strongly driven by extrinsic factors. Conclusion/significance Climate forcing and socio-economic heterogeneity act synergistically at local scales on the population dynamics of urban malaria in this city. The

  6. Spatial distribution pattern and dynamics of the primary population in a natural Populus euphratica forest in Tarim Basin, Xinjiang, China

    Institute of Scientific and Technical Information of China (English)

    Lu HAN; Haizhen WANG; Zhengli ZHOU; Zhijun LI

    2008-01-01

    One 50 m × 50 m standard plot was sampled in a natural forest of Populus euphratica in Awati County, situated at the edge of the Tarim Basin, Xinjiang Uygur Autonomous Region, China. The field investigation was conducted with a contiguous grid quadrate method. By means of a test of variance/mean value ratio, aggregation intensity index and theoretical distribution models, the spatial distribution pattern and the dynamics of primary populations in P. euphratica forest were studied. The results showed that the spatial distribution pattern of two dominant arbor populations conformed to clumped distribution. The aggregation intensity of the P. euphra-tica population was higher than that of P. pruinosa popu- lation. The spatial distribution pattern of two companion plant populations in the shrub layer also conformed to clump type, though the aggregation intensity of Tamarix chinensis was higher. In the herb layer, the distribution patterns of Glycyrrhiza uralensis and Asparagus persicus conformed respectively to a clumped pattern and a ran-dom pattern. The results of a Taylor power method test and Iwao's m2-x regression model also verified that both P. euphratica and P. pruinosa populations belong to a clumped pattern. Although the distribution pattern of P. pruinosa population at different development stages all belonged to a clumped distribution pattern, the aggrega-tion intensity dropped gradually along with age develop-ment. The distribution patterns of the P. euphratica population at different development stages changed from random type to clumped type, and further to random type. The differences in spatial distribution patterns of different populations at different development stages were related not only to ecological and biological characteris-tics of each species in the communities in the light of competitive exclusion principle among the populations, but were also closely related to the habitats in which the species lived in.

  7. An empirical study on the spatial distribution of the population, economy and water resources in Northeast China

    Science.gov (United States)

    Zhang, Conglin; Liu, Yu; Qiao, Haijuan

    The relationship among the population, economy and water resources is complex, and the contradictions and conflicts will appear and aggravate with the rapid development of economy and society in Northeast China. Based on the statistical analysis of the available data, this paper depicted the static distribution characteristics of the population, economy and water resources of Northeast China in 2011. It was found that the spatial distribution of the population, economy and water resources was unbalanced in Northeast China. The water resources mismatched with the population and economy. The population and economy were relatively dense and developed in the southwestern part of Northeast China respectively, while the water resources was relatively scarce. However, the situations in the northern part of Northeast China were opposite to those in the southwestern part. The population-economy inconsistence indexes of the cities in northern part of Northeast China showed a significant trend of spatial aggregation and heterogeneity. The cities with lower (1) inconsistence indexes all faced the problem of water resources shortage. Applying geometric gravity center method and grey correlation model, the result indicated that there was relatively high spatial relevance and the relative deviation among the spatial dynamic distributions of the population, economy and water resources was large. The gravity centers of economy and per capita average annual total water resources moved westward, while the gravity center of population gravity center moved eastward in the period of 1997-2011 in Northeast China. It must be noted that, the migration trend of the economy gravity center was more significant than those of the population and water resources.

  8. Spatial genetic analyses reveal cryptic population structure and migration patterns in a continuously harvested grey wolf (Canis lupus population in north-eastern Europe.

    Directory of Open Access Journals (Sweden)

    Maris Hindrikson

    Full Text Available Spatial genetics is a relatively new field in wildlife and conservation biology that is becoming an essential tool for unravelling the complexities of animal population processes, and for designing effective strategies for conservation and management. Conceptual and methodological developments in this field are therefore critical. Here we present two novel methodological approaches that further the analytical possibilities of STRUCTURE and DResD. Using these approaches we analyse structure and migrations in a grey wolf (Canislupus population in north-eastern Europe. We genotyped 16 microsatellite loci in 166 individuals sampled from the wolf population in Estonia and Latvia that has been under strong and continuous hunting pressure for decades. Our analysis demonstrated that this relatively small wolf population is represented by four genetic groups. We also used a novel methodological approach that uses linear interpolation to statistically test the spatial separation of genetic groups. The new method, which is capable of using program STRUCTURE output, can be applied widely in population genetics to reveal both core areas and areas of low significance for genetic groups. We also used a recently developed spatially explicit individual-based method DResD, and applied it for the first time to microsatellite data, revealing a migration corridor and barriers, and several contact zones.

  9. Population dynamics, information transfer, and spatial organization in a chemical reaction network under spatial confinement and crowding conditions.

    Science.gov (United States)

    Bellesia, Giovanni; Bales, Benjamin B

    2016-10-01

    We investigate, via Brownian dynamics simulations, the reaction dynamics of a generic, nonlinear chemical network under spatial confinement and crowding conditions. In detail, the Willamowski-Rossler chemical reaction system has been "extended" and considered as a prototype reaction-diffusion system. Our results are potentially relevant to a number of open problems in biophysics and biochemistry, such as the synthesis of primitive cellular units (protocells) and the definition of their role in the chemical origin of life and the characterization of vesicle-mediated drug delivery processes. More generally, the computational approach presented in this work makes the case for the use of spatial stochastic simulation methods for the study of biochemical networks in vivo where the "well-mixed" approximation is invalid and both thermal and intrinsic fluctuations linked to the possible presence of molecular species in low number copies cannot be averaged out.

  10. Population dynamics, information transfer, and spatial organization in a chemical reaction network under spatial confinement and crowding conditions

    Science.gov (United States)

    Bellesia, Giovanni; Bales, Benjamin B.

    2016-10-01

    We investigate, via Brownian dynamics simulations, the reaction dynamics of a generic, nonlinear chemical network under spatial confinement and crowding conditions. In detail, the Willamowski-Rossler chemical reaction system has been "extended" and considered as a prototype reaction-diffusion system. Our results are potentially relevant to a number of open problems in biophysics and biochemistry, such as the synthesis of primitive cellular units (protocells) and the definition of their role in the chemical origin of life and the characterization of vesicle-mediated drug delivery processes. More generally, the computational approach presented in this work makes the case for the use of spatial stochastic simulation methods for the study of biochemical networks in vivo where the "well-mixed" approximation is invalid and both thermal and intrinsic fluctuations linked to the possible presence of molecular species in low number copies cannot be averaged out.

  11. Competition, mortality, and development of spatial patterns in two Cantabrian populations of Fagus sylvatica L. (Fagaceae

    Directory of Open Access Journals (Sweden)

    Fernández Prieto, José Antonio

    2000-06-01

    Full Text Available In this paper the spatial patterns of size and mortality of European beech (Fagus sylvatica L. were analy sed in two deciduous forest plots of Northern Spain. ¿i general terms, radial growth of F. sylvatica yields a direct relationship with size and an inverse relation with intraspecific competition while tree mortality seems be related to intraspecific competition. In the overall even-aged population, a lack of a recognisable structure in tree-size distribution, a small-scale regularity of survivors, and a regular pattern of dominant trees was noticed. This is a consequence of intense intraspecific competition at local level. In the old-growth plot, the wide repulsión between small and large beeches yields a specific spatial structure in tree-size distribution, showing even-sized groups of trees in different stages. Mortality in this plot occurs mainly within the dense group of small trees, which produces a broad regular pattern among the live beech trees. The random spatial pattern of dominant beeches seems to be characteristic of old-growth forests and could be a consequence of either self-thinning processes or exogenous factors.En el presente trabajo se analizan las distribuciones espaciales de tamaño y mortalidad en poblaciones de haya (Fagus sylvatica L. incluidas en dos parcelas de bosque atlántico. En general, el crecimiento radial de F. sylvatica es directamente proporcional al tamaño e inversamente proporcional a la competencia intraespecífica, mientras que la mortalidad parece estar condicionada por competencia con individuos de la misma especie. La población formada sobre todo por árboles coetáneos presenta características espaciales indicativas de una intensa competencia intraespecífica entre árboles vecinos, como lo son la ausencia de una distribución ordenada de tamaños, regularidad local de los árboles vivos y un patrón regular en los árboles dominantes. La población incluida en bosque maduro presenta una

  12. Censusing natural Microgametophyte populations:variable spatial mosaics and extreme fine-graininess in winter-flowering Helleborus foetidus (Ranunculaceae)

    OpenAIRE

    Carlos M Herrera

    2002-01-01

    Little is known about patterns and correlates of variation in microgametophyte populations for naturally pollinated plants, yet this information is critical for evaluating the prevalence and potential evolutionary significance of gametophyte competition in the wild. This paper analyzes spatial and temporal variation in microgametophyte populations (= number of pollen tubes per style) for the winter-flowering, perennial herb Helleborus foetidus (Ranunculaceae), based on data from 29 populatio...

  13. Hyperdominance in Amazonian forest carbon cycling

    Science.gov (United States)

    Fauset, Sophie; Johnson, Michelle O.; Gloor, Manuel; Baker, Timothy R.; Monteagudo M., Abel; Brienen, Roel J.W.; Feldpausch, Ted R.; Lopez-Gonzalez, Gabriela; Malhi, Yadvinder; ter Steege, Hans; Pitman, Nigel C.A.; Baraloto, Christopher; Engel, Julien; Pétronelli, Pascal; Andrade, Ana; Camargo, José Luís C.; Laurance, Susan G.W.; Laurance, William F.; Chave, Jerôme; Allie, Elodie; Vargas, Percy Núñez; Terborgh, John W.; Ruokolainen, Kalle; Silveira, Marcos; Aymard C., Gerardo A.; Arroyo, Luzmila; Bonal, Damien; Ramirez-Angulo, Hirma; Araujo-Murakami, Alejandro; Neill, David; Hérault, Bruno; Dourdain, Aurélie; Torres-Lezama, Armando; Marimon, Beatriz S.; Salomão, Rafael P.; Comiskey, James A.; Réjou-Méchain, Maxime; Toledo, Marisol; Licona, Juan Carlos; Alarcón, Alfredo; Prieto, Adriana; Rudas, Agustín; van der Meer, Peter J.; Killeen, Timothy J.; Marimon Junior, Ben-Hur; Poorter, Lourens; Boot, Rene G.A.; Stergios, Basil; Torre, Emilio Vilanova; Costa, Flávia R.C.; Levis, Carolina; Schietti, Juliana; Souza, Priscila; Groot, Nikée; Arets, Eric; Moscoso, Victor Chama; Castro, Wendeson; Coronado, Euridice N. Honorio; Peña-Claros, Marielos; Stahl, Clement; Barroso, Jorcely; Talbot, Joey; Vieira, Ima Célia Guimarães; van der Heijden, Geertje; Thomas, Raquel; Vos, Vincent A.; Almeida, Everton C.; Davila, Esteban Álvarez; Aragão, Luiz E.O.C.; Erwin, Terry L.; Morandi, Paulo S.; de Oliveira, Edmar Almeida; Valadão, Marco B.X.; Zagt, Roderick J.; van der Hout, Peter; Loayza, Patricia Alvarez; Pipoly, John J.; Wang, Ophelia; Alexiades, Miguel; Cerón, Carlos E.; Huamantupa-Chuquimaco, Isau; Di Fiore, Anthony; Peacock, Julie; Camacho, Nadir C. Pallqui; Umetsu, Ricardo K.; de Camargo, Plínio Barbosa; Burnham, Robyn J.; Herrera, Rafael; Quesada, Carlos A.; Stropp, Juliana; Vieira, Simone A.; Steininger, Marc; Rodríguez, Carlos Reynel; Restrepo, Zorayda; Muelbert, Adriane Esquivel; Lewis, Simon L.; Pickavance, Georgia C.; Phillips, Oliver L.

    2015-01-01

    While Amazonian forests are extraordinarily diverse, the abundance of trees is skewed strongly towards relatively few ‘hyperdominant' species. In addition to their diversity, Amazonian trees are a key component of the global carbon cycle, assimilating and storing more carbon than any other ecosystem on Earth. Here we ask, using a unique data set of 530 forest plots, if the functions of storing and producing woody carbon are concentrated in a small number of tree species, whether the most abundant species also dominate carbon cycling, and whether dominant species are characterized by specific functional traits. We find that dominance of forest function is even more concentrated in a few species than is dominance of tree abundance, with only ≈1% of Amazon tree species responsible for 50% of carbon storage and productivity. Although those species that contribute most to biomass and productivity are often abundant, species maximum size is also influential, while the identity and ranking of dominant species varies by function and by region. PMID:25919449

  14. Informed dispersal, heterogeneity in animal dispersal syndromes and the dynamics of spatially structured populations.

    Science.gov (United States)

    Clobert, Jean; Le Galliard, Jean-François; Cote, Julien; Meylan, Sandrine; Massot, Manuel

    2009-03-01

    There is accumulating evidence that individuals leave their natal area and select a breeding habitat non-randomly by relying upon information about their natal and future breeding environments. This variation in dispersal is not only based on external information (condition dependence) but also depends upon the internal state of individuals (phenotype dependence). As a consequence, not all dispersers are of the same quality or search for the same habitats. In addition, the individual's state is characterized by morphological, physiological or behavioural attributes that might themselves serve as a cue altering the habitat choice of conspecifics. These combined effects of internal and external information have the potential to generate complex movement patterns and could influence population dynamics and colonization processes. Here, we highlight three particular processes that link condition-dependent dispersal, phenotype-dependent dispersal and habitat choice strategies: (1) the relationship between the cause of departure and the dispersers' phenotype; (2) the relationship between the cause of departure and the settlement behaviour and (3) the concept of informed dispersal, where individuals gather and transfer information before and during their movements through the landscape. We review the empirical evidence for these processes with a special emphasis on vertebrate and arthropod model systems, and present case studies that have quantified the impacts of these processes on spatially structured population dynamics. We also discuss recent literature providing strong evidence that individual variation in dispersal has an important impact on both reinforcement and colonization success and therefore must be taken into account when predicting ecological responses to global warming and habitat fragmentation.

  15. [Spatial pattern analysis and associations of Quercus aquifolioides population at different growth stages in Southeast Tibet, China].

    Science.gov (United States)

    Shen, Zhi-qiang; Hua, Min; Dan, Qu; Lu, Jie; Fang, Jiang-ping

    2016-02-01

    This article analyzed the spatial pattern and its correlation of Quercus aquifolioides, Southeast Tibet at different growing stages by using Ripley' s L function in the method of point pattern, analysis. The results showed the diameter structure of Q. aquifolioides population in Southeast Tibet followed a 'single peak' shape and the saplings and medium trees predominated in number in the whole population. The population had a high regeneration rate and was of increase type. In the growth process of Q. aquifolioides from saplings to large trees, saplings and medium trees showed aggregation distribution at.small scale, while large trees showed basically random distribution at whole scale. There was significant correlation between saplings with medium or large trees at small scale, however, there was no correlation between medium and large trees. In the growth process of Q. aquifolioides population from saplings, medium trees to large trees, its spatial pattern developed from aggregative distribution to random distribution. The natural regeneration of Q. aquifolioides population was affected not only by interspecific competition, but also by intraspecific competition. In the similar natural environment, the most important factors affecting the spatial pattern of Q. aquifoioides population were its own biological and ecological characteristics.

  16. Les connaissances au quotidien : perceptions et savoirs des populations riveraines de l’Amazonie sur leurs ressources halieutiques Conhecimentos no cotidiano : percepções e saberes de populações ribeirinhas da Amazônia sobre seus recursos haliêuticos  Knowledge in everyday life: perceptions and knowledges of riparian Amazonian populations on their fishery resources

    Directory of Open Access Journals (Sweden)

    S. Paquet

    2011-12-01

    nova luz sobre as questões relacionadas a gestão dos recursos hídricos e levantam lacunas impedindo uma real apropriação dos problemas ambientais e o surgimento de soluções locais. De fato, nós mostramos que o desmatamento e a erosão das margens do rio foram percebidos como as principais mudanças ambientais observadas ao longo do tempo. A diminuição na abundância e/ou a redução do tamanho dos peixes também foi relatada pelos entrevistados. A falta de conexão pelos pescadores entre as mudanças observadas nos ecossistemas naturais e as mudanças ocorridas nas populações de peixes chamou a nossa atenção. Por conseguinte, qualquer intervenção visando o desenvolvimento e/ou a implementação de métodos sustentáveis de exploração dos recursos haliêuticos deve passar por uma atividade preliminar de informação. A intenção sendo gerar a apropriação local das questões ambientais e de favorecer a emergência de soluções ao seio mesmo das comunidades em questão.In this paper we are interested on subsistence fishing practiced by riparian Amazonian populations. The results presented, concerning the traditional knowledge of inhabitants, their perceptions about the environmental changes and the evolution of fishery resources as well as the some solutions regarding these changes, derived from two surveys administated to twelve communities of the Tapajós Basin. These results shed new light on issues related to the management of fisheries resources and highlight the gaps preventing a real appropriation of environmental problems and the emergence of local solutions. Indeed, we show that deforestation and erosion of river banks were perceived as the major environmental changes observed over the time.The decrease in abundance and/or reduction in the sizes of fish was also been reported by respondents. The lack of connection between the observed changes in natural ecosystems and changes in fish stocks caught our attention. Consequently, any

  17. Sampling strategy for wild soybean (Glycine soja) populations based on their genetic diversity and fine-scale spatial genetic structure

    Institute of Scientific and Technical Information of China (English)

    ZHU Weiyue; ZHOU Taoying; ZHONG Ming; LU Baorong

    2007-01-01

    A total of 892 individuals sampled from a wild soybean population in a natural reserve near the Yellow River estuary located in Kenli of Shandong Province (China) were investigated.Seventeen SSR (simple sequence repeat) primer pairs from cultivated soybeans were used to estimate the genetic diversity of the population and its variation pattern versus changes of the sample size (sub-samples),in addition to investigating the fine-scale spatial genetic structure within the population.The results showed relatively high genetic diversity of the population with the mean value of allele number (A) being 2.88,expected heterozygosity (He) 0.431,Shannon diversity index (/) 0.699,and percentage of polymorphic loci (P) 100%.Sub-samples of different sizes (ten groups) were randomly drawn from the population and their genetic diversity was calculated by computer simulation.The regression model of the four diversity indexes with the change of sample sizes was computed.As a result,27-52 individuals can reach 95% of total genetic variability of the population.Spatial autocorrelation analysis revealed that the genetic patch size of this wild soybean population is about 18 m.The study provided a scientific basis for the sampling strategy of wild soybean populations.

  18. Spatial evolution of short pulses under conditions of coherent population trapping

    CERN Document Server

    Arkhipkin, V G

    2001-01-01

    We study the features of spatial and temporal evolution of two powerful short different-wavelength laser pulses interacting with optical dense three-level Lambda-type medium under condition of coherent population trapping for the general case of unequal transition oscillator strengths. The pulses are simultaneously sent into an atom. The durations of probe and coupling pulses $T_{1,2}$ ($T_2>T_1$) are supposed to be shorter than all relaxation times in the medium. We present analytical and numerical solutions of the self-consistent set of coupled Schr\\"{o}dinger equations and reduced wave equations in adiabatic limit with taking into account the first non-adiabatic correction. The adiabaticity criterion with account of pulse propagation is studied. We find that propagation dynamics depends on the relationship between the transition oscillator strengths. It is shown that at the initial stage of propagation the envelopes of the pulses slightly change along the length of the medium. This distance can be large co...

  19. The CALIFA survey across the Hubble sequence. Spatially resolved stellar population properties in galaxies

    Science.gov (United States)

    González Delgado, R. M.; García-Benito, R.; Pérez, E.; Cid Fernandes, R.; de Amorim, A. L.; Cortijo-Ferrero, C.; Lacerda, E. A. D.; López Fernández, R.; Vale-Asari, N.; Sánchez, S. F.; Mollá, M.; Ruiz-Lara, T.; Sánchez-Blázquez, P.; Walcher, C. J.; Alves, J.; Aguerri, J. A. L.; Bekeraité, S.; Bland-Hawthorn, J.; Galbany, L.; Gallazzi, A.; Husemann, B.; Iglesias-Páramo, J.; Kalinova, V.; López-Sánchez, A. R.; Marino, R. A.; Márquez, I.; Masegosa, J.; Mast, D.; Méndez-Abreu, J.; Mendoza, A.; del Olmo, A.; Pérez, I.; Quirrenbach, A.; Zibetti, S.

    2015-09-01

    Various different physical processes contribute to the star formation and stellar mass assembly histories of galaxies. One important approach to understanding the significance of these different processes on galaxy evolution is the study of the stellar population content of today's galaxies in a spatially resolved manner. The aim of this paper is to characterize in detail the radial structure of stellar population properties of galaxies in the nearby universe, based on a uniquely large galaxy sample, considering the quality and coverage of the data. The sample under study was drawn from the CALIFA survey and contains 300 galaxies observed with integral field spectroscopy. These cover a wide range of Hubble types, from spheroids to spiral galaxies, while stellar masses range from M⋆ ~ 109 to 7 × 1011 M⊙. We apply the fossil record method based on spectral synthesis techniques to recover the following physical properties for each spatial resolution element in our target galaxies: the stellar mass surface density (μ⋆), stellar extinction (AV), light-weighted and mass-weighted ages (⟨log age⟩L, ⟨log age⟩M), and mass-weighted metallicity (⟨log Z⋆⟩M). To study mean trends with overall galaxy properties, the individual radial profiles are stacked in seven bins of galaxy morphology (E, S0, Sa, Sb, Sbc, Sc, and Sd). We confirm that more massive galaxies are more compact, older, moremetal rich, and less reddened by dust. Additionally, we find that these trends are preserved spatially with the radial distance to the nucleus. Deviations from these relations appear correlated with Hubble type: earlier types are more compact, older, and more metal rich for a given M⋆, which is evidence that quenching is related to morphology, but not driven by mass. Negative gradients of ⟨log age⟩L are consistent with an inside-out growth of galaxies, with the largest ⟨log age⟩L gradients in Sb-Sbc galaxies. Further, the mean stellar ages of disks and bulges are

  20. Regimes of spatial ordering in Brazil: neoliberalism, leftist populism and modernist aesthetics in slum upgrading in Recife

    NARCIS (Netherlands)

    Nuijten, M.C.M.; Koster, M.; Vries, de P.A.

    2012-01-01

    This paper shows how regimes of spatial ordering in Brazil are produced by the entangling of neoliberalism, leftist populism and modernist visions. The paper focuses on Prometrópole, a slum upgrading project in Recife funded by the World Bank, which commenced in 2007. In this project, the neoliberal

  1. Spatial relationships between seed bank and seedling populations of Hordeum spontaneum and Cardaria draba in saffron (Crocus sativus L. fields

    Directory of Open Access Journals (Sweden)

    hasan makariyan

    2009-06-01

    Full Text Available Geostatistical techniques were used to characterize the spatial relationship between Hordeum spontaneum and Cardaria draba seedling and seed bank over the course of one growing season (2004-2005 in three saffron fields, located in Southern Khorasan, Iran. The density and spatial distribution of weeds varied widely with fields. The emergence percentage was higher for Cardaria draba than for H. spontaneum in all fields. Semivariograms showed spatial autocorrelation in seed bank and seedling populations of H. spontaneum and C. draba in all fields. Cross-semivariograms showed moderate to strong (63.3 to 94.7% and strong spatial continuity (78.4 to 95.4 %. between seed bank and seedling population densities of H. spontaneum and C. draba, respectively. Grey-scale field maps of C. draba seed banks corresponded visually to maps of seedling populations and could have been used to target control efforts, but visual correspondence between H. spontaneum seed bank and seedling maps was poor. Seed bank and seedling mapping may be useful for site-specific management, but additional information is needed to understand variation in the relationships between these two populations over time and space.

  2. New Brazilian Cerambycidae from the Amazonian region (Coleoptera)

    Science.gov (United States)

    Santos-Silva, Antonio; Galileo, Maria Helena M.

    2016-01-01

    Abstract Three new species of Cerambycidae are described from the Brazilian Amazonian region: Psapharochrus bezarki (Lamiinae, Acanthoderini); Xenofrea ayri (Lamiinae, Xenofreini); and Mecometopus wappesi (Cerambycinae, Clytini). Mecometopus wappesi is added to a previous key. PMID:27551200

  3. A spatial decision support tool for estimating population catchments to aid rural and remote health service allocation planning.

    Science.gov (United States)

    Schuurman, Nadine; Randall, Ellen; Berube, Myriam

    2011-12-01

    There is mounting pressure on healthcare planners to manage and contain costs. In rural regions, there is a particular need to rationalize health service allocation to ensure the best possible coverage for a dispersed population. Rural health administrators need to be able to quantify the population affected by their allocation decisions and, therefore, need the capacity to incorporate spatial analyses into their decision-making process. Spatial decision support systems (SDSS) can provide this capability. In this article, we combine geographical information systems (GIS) with a web-based graphical user interface (webGUI) in a SDSS tool that enables rural decision-makers charged with service allocation, to estimate population catchments around specific health services in rural and remote areas. Using this tool, health-care planners can model multiple scenarios to determine the optimal location for health services, as well as the number of people served in each instance.

  4. Placentation in the Amazonian manatee (Trichechus inunguis)

    DEFF Research Database (Denmark)

    Carter, A M; Miglino, M A; Ambrosio, C E;

    2008-01-01

    Evidence from several sources supports a close phylogenetic relationship between elephants and sirenians. To explore whether this was reflected in similar placentation, we examined eight delivered placentae from the Amazonian manatee using light microscopy and immunohistochemistry. In addition......, the fetal placental circulation was described by scanning electron microscopy of vessel casts. The manatee placenta was zonary and endotheliochorial, like that of the elephant. The interhaemal barrier comprised maternal endothelium, cytotrophoblasts and fetal endothelium. We found columnar trophoblast...... beneath the chorionic plate and lining lacunae in this region, but there was no trace in the term placenta of haemophagous activity. The gross anatomy of the cord and fetal membranes was consistent with previous descriptions and included a four-chambered allantoic sac, as also found in the elephant...

  5. Evaluating effects of Everglades restoration on American crocodile populations in south Florida using a spatially-explicit, stage-based population model

    Science.gov (United States)

    Green, Timothy W.; Slone, Daniel H.; Swain, Eric D.; Cherkiss, Michael S.; Lohmann, Melinda; Mazzotti, Frank J.; Rice, Kenneth G.

    2014-01-01

    The distribution and abundance of the American crocodile (Crocodylus acutus) in the Florida Everglades is dependent on the timing, amount, and location of freshwater flow. One of the goals of the Comprehensive Everglades Restoration Plan (CERP) is to restore historic freshwater flows to American crocodile habitat throughout the Everglades. To predict the impacts on the crocodile population from planned restoration activities, we created a stage-based spatially explicit crocodile population model that incorporated regional hydrology models and American crocodile research and monitoring data. Growth and survival were influenced by salinity, water depth, and density-dependent interactions. A stage-structured spatial model was used with discrete spatial convolution to direct crocodiles toward attractive sources where conditions were favorable. The model predicted that CERP would have both positive and negative impacts on American crocodile growth, survival, and distribution. Overall, crocodile populations across south Florida were predicted to decrease approximately 3 % with the implementation of CERP compared to future conditions without restoration, but local increases up to 30 % occurred in the Joe Bay area near Taylor Slough, and local decreases up to 30 % occurred in the vicinity of Buttonwood Canal due to changes in salinity and freshwater flows.

  6. Development of population geography from antropogeography to spatial-analitical approach

    OpenAIRE

    Spasovski Milena; Šantić Danica

    2013-01-01

    Population geography is a subdiscipline of Human geography and studies the distribution, concentration and density of population over the terestrial surface, as well as differences in population size, changes and characteristics, like structures, migrations, activity etc, among some places present compared to others. Population geography has had a perscientific stage as long as human history. First modern scientific treatis of population in geography was th...

  7. Relations between Spatial Distribution, Social Affiliations and Dominance Hierarchy in a Semi-Free Mandrill Population.

    Science.gov (United States)

    Naud, Alexandre; Chailleux, Eloise; Kestens, Yan; Bret, Céline; Desjardins, Dominic; Petit, Odile; Ngoubangoye, Barthélémy; Sueur, Cédric

    2016-01-01

    Although there exist advantages to group-living in comparison to a solitary lifestyle, costs and gains of group-living may be unequally distributed among group members. Predation risk, vigilance levels and food intake may be unevenly distributed across group spatial geometry and certain within-group spatial positions may be more or less advantageous depending on the spatial distribution of these factors. In species characterized with dominance hierarchy, high-ranking individuals are commonly observed in advantageous spatial position. However, in complex social systems, individuals can develop affiliative relationships that may balance the effect of dominance relationships in individual's spatial distribution. The objective of the present study is to investigate how the group spatial distribution of a semi-free ranging colony of Mandrills relates to its social organization. Using spatial observations in an area surrounding the feeding zone, we tested the three following hypothesis: (1) does dominance hierarchy explain being observed in proximity or far from a food patch? (2) Do affiliative associations also explain being observed in proximity or far from a food patch? (3) Do the differences in rank in the group hierarchy explain being co-observed in proximity of a food patch? Our results showed that high-ranking individuals were more observed in proximity of the feeding zone while low-ranking individuals were more observed at the boundaries of the observation area. Furthermore, we observed that affiliative relationships were also associated with individual spatial distributions and explain more of the total variance of the spatial distribution in comparison with dominance hierarchy. Finally, we found that individuals observed at a same moment in proximity of the feeding zone were more likely to be distant in the hierarchy while controlling for maternal kinship, age and sex similarity. This study brings some elements about how affiliative networks and dominance

  8. Relations Between Spatial Distribution, Social Affiliations And Dominance Hierarchy In A Semi-Free Mandrill Population

    Directory of Open Access Journals (Sweden)

    Alexandre eNaud

    2016-05-01

    Full Text Available Although there exist advantages to group-living in comparison to a solitary lifestyle, costs and gains of group-living may be unequally distributed among group members. Predation risk, vigilance levels and food intake may be unevenly distributed across group spatial geometry and certain within-group spatial positions may be more or less advantageous depending on the spatial distribution of these factors. In species characterized with dominance hierarchy, high-ranking individuals are commonly observed in advantageous spatial position. However, in complex social systems, individuals can develop affiliative relationships that may balance the effect of dominance relationships in individual’s spatial distribution. The objective of the present study is to investigate how the group spatial distribution of a semi-free ranging colony of Mandrills relates to its social organization. Using spatial observations in an area surrounding the feeding zone, we tested the three following hypothesis: (1 does dominance hierarchy explain being observed in proximity or far from a food patch? (2 Do affiliative associations also explain being observed in proximity or far from a food patch? (3 Do the differences in rank in the group hierarchy explain being co-observed in proximity of a food patch? Our results showed that high-ranking individuals were more observed in proximity of the feeding zone while low-ranking individuals were more observed at the boundaries of the observation area. Furthermore, we observed that affiliative relationships were also associated with individual spatial distributions and explain more of the total variance of the spatial distribution in comparison with dominance hierarchy. Finally, we found that individuals observed at a same moment in proximity of the feeding zone were more likely to be distant in the hierarchy while controlling for maternal kinship, age and sex similarity. This study brings some elements about how affiliative networks

  9. In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil.

    Science.gov (United States)

    Nunan, N; Wu, K; Young, I M; Crawford, J W; Ritz, K

    2002-11-01

    Very little is known about the spatial organization of soil microbes across scales that are relevant both to microbial function and to field-based processes. The spatial distributions of microbes and microbially mediated activity have a high intrinsic variability. This can present problems when trying to quantify the effects of disturbance, management practices, or climate change on soil microbial systems and attendant function. A spatial sampling regime was implemented in an arable field. Cores of undisturbed soil were sampled from a 3 x 3 x 0.9 m volume of soil (topsoil and subsoil) and a biological thin section, in which the in situ distribution of bacteria could be quantified, prepared from each core. Geostatistical analysis was used to quantify the nature of spatial structure from micrometers to meters and spatial point pattern analysis to test for deviations from complete spatial randomness of mapped bacteria. Spatial structure in the topsoil was only found at the microscale (micrometers), whereas evidence for nested scales of spatial structure was found in the subsoil (at the microscale, and at the centimeter to meter scale). Geostatistical ranges of spatial structure at the micro scale were greater in the topsoil and tended to decrease with depth in the subsoil. Evidence for spatial aggregation in bacteria was stronger in the topsoil and also decreased with depth in the subsoil, though extremely high degrees of aggregation were found at very short distances in the deep subsoil. The data suggest that factors that regulate the distribution of bacteria in the subsoil operate at two scales, in contrast to one scale in the topsoil, and that bacterial patches are larger and more prevalent in the topsoil.

  10. Population demography and spatial ecology of a reintroduced lion population in the Greater Makalali Conservancy, South Africa

    Directory of Open Access Journals (Sweden)

    D. Druce

    2004-12-01

    Full Text Available Many recently established small game reserves in southern Africa have introduced lion, and have had to actively manage their populations as the lion are in relatively small(<1000 km², enclosed areas. This study was undertaken on the Greater Makalali Conservancy (140 km², Limpopo Province, South Africa to describe population demography and lion movement patterns in order to enhance management decisions. A pride of five lion were introduced to Makalali in December 1994 and since then 35 cubs have been born (11.6 % population growth per year over 7.5 years, 31 of which have been translocated to other reserves. To increase genetic diversity, the two male coalition was removed in May 1999 and another two males introduced during July 1999. During the study, the reserve area was increased by approximately 23 %. Although the Makalali lion utilised a smaller home range during winter (75.3 km² than summer (106.8 km², this difference was not significant. The core ranges also shifted between seasons, with 46 % of the summer core being utilised during winter. When the new males were introduced, they centred their core range near their release boma. The females also shifted their core range to this region after their young male cubs were moved into the boma. After the Makalali area was increased, the lion increased their home range area, while their core range became reduced and more dispersed. There was no significant difference in the distances the lion moved in a 24 hour period between the two seasons, or before and after the two management actions. The Makalali lion also spent more time than expected in low open woodland and grassland habitats and less than expected in low thickets. We conclude that lion populations can successfully exist within small reserves (<100km² and that actions to manage the population can be successful if certain criteria are considered.

  11. Excess of mutational jackpot events in expanding populations revealed by spatial Luria-Delbrück experiments.

    Science.gov (United States)

    Fusco, Diana; Gralka, Matti; Kayser, Jona; Anderson, Alex; Hallatschek, Oskar

    2016-10-03

    The genetic diversity of growing cellular populations, such as biofilms, solid tumours or developing embryos, is thought to be dominated by rare, exceptionally large mutant clones. Yet, the emergence of these mutational jackpot events is only understood in well-mixed populations, where they stem from mutations that arise during the first few cell divisions. To study jackpot events in spatially structured populations, we track mutant clones in microbial populations using fluorescence microscopy and population sequencing. High-frequency mutations are found to be massively enriched in microbial colonies compared with well-shaken liquid cultures, as a result of late-occurring mutations surfing at the edge of range expansions. Thus, jackpot events can be generated not only when mutations arise early but also when they occur at favourable locations, which exacerbates their role in adaptation and disease. In particular, because spatial competition with the wild type keeps most mutant clones in a quiescent state, strong selection pressures that kill the wild type promote drug resistance.

  12. The effects of spatial and temporal heterogeneity on the population dynamics of four animal species in a Danish landscape

    Directory of Open Access Journals (Sweden)

    Forchhammer Mads C

    2009-06-01

    Full Text Available Abstract Background Variation in carrying capacity and population return rates is generally ignored in traditional studies of population dynamics. Variation is hard to study in the field because of difficulties controlling the environment in order to obtain statistical replicates, and because of the scale and expense of experimenting on populations. There may also be ethical issues. To circumvent these problems we used detailed simulations of the simultaneous behaviours of interacting animals in an accurate facsimile of a real Danish landscape. The models incorporate as much as possible of the behaviour and ecology of skylarks Alauda arvensis, voles Microtus agrestis, a ground beetle Bembidion lampros and a linyphiid spider Erigone atra. This allows us to quantify and evaluate the importance of spatial and temporal heterogeneity on the population dynamics of the four species. Results Both spatial and temporal heterogeneity affected the relationship between population growth rate and population density in all four species. Spatial heterogeneity accounted for 23–30% of the variance in population growth rate after accounting for the effects of density, reflecting big differences in local carrying capacity associated with the landscape features important to individual species. Temporal heterogeneity accounted for 3–13% of the variance in vole, skylark and spider, but 43% in beetles. The associated temporal variation in carrying capacity would be problematic in traditional analyses of density dependence. Return rates were less than one in all species and essentially invariant in skylarks, spiders and beetles. Return rates varied over the landscape in voles, being slower where there were larger fluctuations in local population sizes. Conclusion Our analyses estimated the traditional parameters of carrying capacities and return rates, but these are now seen as varying continuously over the landscape depending on habitat quality and the mechanisms

  13. DISPLACE: a dynamic, individual-based model for spatial fishing planning and effort displacement: Integrating underlying fish population models

    DEFF Research Database (Denmark)

    Bastardie, Francois; Nielsen, J. Rasmus; Miethe, Tanja

    We previously developed a spatially explicit, individual-based model (IBM) evaluating the bio-economic efficiency of fishing vessel movements between regions according to the catching and targeting of different species based on the most recent high resolution spatial fishery data. The main purpose...... version couples the vessel model to selected size-based population models and considers the underlying resource dynamics in the distribution and density patterns of the targeted stocks for the cases of Danish and German vessels harvesting the North Sea and Baltic fish stocks. The stochastic fishing...... by vessels on the fish stocks, with resulting fishing mortality, and the vessels’ economic consequences are evaluated on high spatial and seasonal disaggregation levels by simulating different individual choices of vessel speed, fishing grounds and ports. All tested scenarios led to increased overall energy...

  14. Population dynamics and spatial distribution of microbial species in multispecies biofilms under the action of direct electric current

    Institute of Scientific and Technical Information of China (English)

    CAO Hongbin; LI Xingang; WU Jinchuan; ZHONG Fangli; ZHANG Yi

    2003-01-01

    The metabolism, population dynamics and spatial distribution of nitrifying bacteria and heterotrophs in biofilms under the action of direct electric current were investigated by using the micro-slicing technique. The nitrification rate of nitrifying bacteria was severely inhibited by a current over 10 Am-2 at lower C/N ratios. Compared to heterotrophs, the nitrifying bacteria in the surface biofilms were severely inhibited, resulting in a significant decrease in bacterial density. An increase in current density narrowed the less current-sensitive inner biofilm region, and in addition the density of NO2-oxidizers decreased more significantly than that of NH4-oxidizers in the surface biofilms probably due to electrochemical reactions at the anode. However, the effect of current on both the population dynamics and the spatial distribution of the microbial species was less significant at larger C/N ratios.

  15. Spatially unassociated galaxies contribute significantly to the blended submillimetre galaxy population: predictions for follow-up observations of ALMA sources

    CERN Document Server

    Hayward, Christopher C; Somerville, Rachel S; Primack, Joel R; Moreno, Jorge; Wechsler, Risa H

    2013-01-01

    There is anecdotal evidence that spatially and physically unassociated galaxies blended into a single submillimetre (submm) source contribute to the submm galaxy (SMG) population. However, the significance of this subpopulation has neither been observationally constrained nor theoretically predicted. This work is the first to theoretically predict the contribution of spatially unassociated components to the SMG population. We generate mock SMG catalogues using lightcones derived from the Bolshoi cosmological simulation; to assign submm flux densities to the mock galaxies, we use a fitting function previously derived from the results of dust radiative transfer performed on hydrodynamical simulations of isolated disc and merging galaxies. We then calculate submm number counts for different beam sizes and without blending. Our model suggests that there are a sufficient number of blended SMGs to account for the observed number counts of submm sources with 850-{\\mu}m flux density S_850 >~12 mJy. Furthermore, we pr...

  16. Population-level consequences of spatially heterogeneous exposure to heavy metals in soil: An individual-based model of springtails

    DEFF Research Database (Denmark)

    Meli, Mattia; Auclerc, Apolline; Palmqvist, Annemette

    2013-01-01

    Contamination of soil with toxic heavy metals poses a major threat to the environment and human health. Anthropogenic sources include smelting of ores, municipal wastes, fertilizers, and pesticides. In assessing soil quality and the environmental and ecological risk of contamination with heavy...... metals, often homogeneous contamination of the soil is assumed. However, soils are very heterogeneous environments. Consequently, both contamination and the response of soil organisms can be assumed to be heterogeneous. This might have consequences for the exposure of soil organisms...... and for the extrapolation of risk from the individual to the population level. Therefore, to explore how soil contamination of different spatial heterogeneity affects population dynamics of soil invertebrates, we developed a spatially explicit individual-based model of the springtail, Folsomia candida, a standard test...

  17. Populações de aranhas errantes do gênero Ctenus em fragmentos florestais na Amazônia Central Populations of Ctenus wandering spiders in Amazonian forest fragments

    Directory of Open Access Journals (Sweden)

    Luiz Augusto Macedo Mestre

    2008-01-01

    ções ambientais.Ctenus is a genus of wandering spiders abundant in Neotropical and African rainforests and is becoming a model organism to understand the biology of predators in the leaf litter fauna. We compared abundance, sex ratio, seasonality and size dimorphism in populations of four species of medium sized wandering spiders, Ctenus amphora, C. crulsi, C. manauara and C. villasboasi in primary forests, fragments with different areas, their borders and secondary forests near them. This study was conducted between February and July 1999, in a terra-firme (non-flooded tropical rain forest, in central Amazonia. The spiders were measured and counted in transects of 250x5 m or 500x5 m in three secondary forest sites, four fragments of primary forest of 1 ha, three of 10 ha, two of 100 ha and four reserves of continuous forest (larger than 10.000 ha. There was a significant predominance of females in two species (C. amphora- 74% and C. crulsi- 65%, sexual dimorphism significant in three species (C. amphora, C. crulsi, and C. manauara, and temporal variation of the abundance for the four species. These results corroborate and complement tendencies from previous studies. There were no statistical differences between spider abundance in interior, borders and between reserves of different areas. Effects of border and size of fragments on the Ctenus spider populations are smaller than the previously observed variations among different habitats in the forest interior. There was no difference in spider size captured in small reserves, large reserves, edges, and continuous forests sites. Comparing these results with other study in the same sites, we conclude that the effects of fragmentation in Ctenus spiders decrease with second grown regeneration, resulting in a rapid reply of these species to habitat modifications.

  18. Population Growth and Its Expression in Spatial Built-up Patterns: The Sana’a, Yemen Case Study

    Directory of Open Access Journals (Sweden)

    Gunter Zeug

    2010-04-01

    Full Text Available In light of rapid global urbanisation, monitoring and mapping of urban and population growth is of great importance. Population growth in Sana’a was investigated for this reason. The capital of the Republic of Yemen is a rapidly growing middle sized city where the population doubles almost every ten years. Satellite data from four different sensors were used to explore urban growth in Sana’a between 1989 and 2007, assisted by topographic maps and cadastral vector data. The analysis was conducted by delineating the built-up areas from the various optical satellite data, applying a fuzzy-rule-based composition of anisotropic textural measures and interactive thresholding. The resulting datasets were used to analyse urban growth and changes in built-up density per district, qualitatively as well as quantitatively, using a geographic information system. The built-up area increased by 87 % between 1989 and 2007. Built-up density has increased in all areas, but particularly in the northern and southern suburban districts, also reflecting the natural barrier of surrounding mountain ranges. Based on long-term population figures, geometric population growth was assumed. This hypothesis was used together with census data for 1994 and 2004 to estimate population figures for 1989 and 2007, resulting in overall growth of about 240%. By joining population figures to district boundaries, the spatial patterns of population distribution and growth were examined. Further, urban built-up growth and population changes over time were brought into relation in order to investigate changes in population density per built-up area. Population densities increased in all districts, with the greatest density change in the peripheral areas towards the North. The results reflect the pressure on the city’s infrastructure and natural resources and could contribute to sustainable urban planning in the city of Sana’a.

  19. Spatial modeling of the geographic distribution of wildlife populations: A case study in the lower Mississippi River region

    Science.gov (United States)

    Ji, W.; Jeske, C.

    2000-01-01

    A geographic information system (GIS)-based spatial modeling approach was developed to study environmental and land use impacts on the geographic distribution of wintering northern pintails (Arias acuta) in the Lower Mississippi River region. Pintails were fitted with backpack radio transmitter packages at Catahoula Lake, LA, in October 1992-1994 and located weekly through the following March. Pintail survey data were converted into a digital database in ARC/INFO GIS format and integrated with environmental GIS data through a customized modeling interface. The study verified the relationship between pintail distributions and major environmental factors and developed a conceptual relation model. Visualization-based spatial simulations were used to display the movement patterns of specific population groups under spatial and temporal constraints. The spatial modeling helped understand the seasonal movement patterns of pintails in relation to their habitat usage in Arkansas and southwestern Louisiana for wintering and interchange situations among population groups wintering in Texas and southeastern Louisiana. (C) 2000 Elsevier Science B.V.

  20. Les stratégies spatiales de la population haïtienne à Miami

    Directory of Open Access Journals (Sweden)

    Cédric Audebert

    2008-02-01

    Full Text Available Le schéma migratoire haïtien s’est traduit par la genèse d’un champ migratoire international entre le pays d’origine et Miami, où la population d’origine haïtienne a enregistré une croissance rapide. Dans une métropole floridienne marquée par une forte ségrégation « ethno-raciale » et socio-économique, les nouveaux venus se sont installés à l’origine dans les quartiers noirs centraux paupérisés. Les incidences de la politique migratoire fédérale sont apparues contrastées, occasionnant le repli sur soi des immigrants à Little Haiti lorsqu’elle était défavorable ou rendant possible la mobilité résidentielle dans une conjoncture d’assouplissement de la législation. Ultérieurement, la complexité croissante de l’espace de l’immigration haïtienne, caractérisé par une évolution rapide de son étendue et de ses formes, s’est manifestée par une dichotomie marquée entre l’« enclave » traditionnelle et les nouveaux espaces d’installation en banlieue. Résultat d’une dynamique d’agrégation autant choisie que contrainte, la concentration spatiale des Haïtiens à Miami s’est traduite par la genèse de secteurs d’implantation privilégiée, terrains favorables à la mise en place de processus de territorialisation complexes. L’apprentissage mental et fonctionnel de l’espace vise à faire sienne la terre d’immigration et à la doter de sens, et apparaît comme le préalable à la mise en place de stratégies collectives de territorialisation. La « prise de possession » d’une portion de l’aire métropolitaine et son affectation à des activités sociales, commerciales et de représentation politique visent à assurer la pérennité du lien communautaire haïtien en créant de la cohésion, de la solidarité et de la socialité.Haitian emigration has evolved within the growing dependency of Haiti from the United States throughout the XXth century. The Haitian migratory pattern

  1. Spatial Heterogeneity of Population Structure of the Mangrove Bruguiera gymnorrhiza at Yingluo Bay, South-China Coast

    Institute of Scientific and Technical Information of China (English)

    LIANGShi-Chu; DONGMing

    2004-01-01

    The spatial heterogeneity, including distribution pattern, tree perimeter and height differentiation, and canopy structure heterogeneity, of Bruguiera gymnorrhiza (L.) Lamk populations at Yingtuo Bay, South-China Coast was investigated using the positioning index (CE), differentiation index (TC and TH), Shannon-Wiener diversity index (D), and Ripley's K-functions. Most populations showed random distribution and low differentiation in perimeters and heights of individuals, while a few showed clumped distribution and clear differentiation. Canopy and gap patches were analyzed at multiple horizontal and vertical scales using geographic information system (GIS). The mosaic patterns of canopy and gap patches are different among populations, and could be quantitatively described with the Shannon-Wiener diversity index based on crown projection. The spatial heterogeneity of the canopy structure changed with spatial scales, but this kind of change would remain relatively stable over a range of scales. This scale range could be regarded as the referenced scale for a regeneration or ecological management unit for the forest.

  2. Spatial analysis of environment and population at risk of natural gas fracking in the state of Pennsylvania, USA.

    Science.gov (United States)

    Meng, Qingmin

    2015-05-15

    Hydraulic fracturing, also known as fracking, has been increasing exponentially across the United States, which holds the largest known shale gas reserves in the world. Studies have found that the high-volume horizontal hydraulic fracturing process (HVHFP) threatens water resources, harms air quality, changes landscapes, and damages ecosystems. However, there is minimal research focusing on the spatial study of environmental and human risks of HVHFP, which is necessary for state and federal governments to administer, regulate, and assess fracking. Integrating GIS and spatial kernel functions, we study the presently operating fracking wells across the state of Pennsylvania (PA), which is the main part of the current hottest Marcellus Shale in US. We geographically process the location data of hydraulic fracturing wells, 2010 census block data, urbanized region data, railway data, local road data, open water data, river data, and wetland data for the state of PA. From this we develop a distance based risk assessment in order to understand the environmental and urban risks. We generate the surface data of fracking well intensity and population intensity by integrating spatial dependence, semivariogram modeling, and a quadratic kernel function. The surface data of population risk generated by the division of fracking well intensity and population intensity provide a novel insight into the local and regional regulation of hydraulic fracturing activities in terms of environmental and health related risks due to the proximity of fracking wells.

  3. [Study of genetic diversity and spatial structure of the wild soybean (Glycine soja Sieb. & Zucc.) population from the Ekaterinovka in the south of Primorskii krai].

    Science.gov (United States)

    Tikhonov, A V; Nedoluzhko, A V; Martynov, V V; Dorokhov, D B

    2011-03-01

    Data are presented on the genetic diversity and spatial structure of the natural wild soybean population from the neighborhood of the settlement of Ekaterinovka in Primorskii krai and on the relationship between the genetic structure of this population and its spatial organization. These data are discussed in comparison with the results of studies of wild soybean populations in the Far East region of the Russian Federation and China. Recommendations are given concerning the collection of genetic wild soybean resources.

  4. Spatial analysis of factors influencing long-term stress in the grizzly bear (Ursus arctos population of Alberta, Canada.

    Directory of Open Access Journals (Sweden)

    Mathieu L Bourbonnais

    Full Text Available Non-invasive measures for assessing long-term stress in free ranging mammals are an increasingly important approach for understanding physiological responses to landscape conditions. Using a spatially and temporally expansive dataset of hair cortisol concentrations (HCC generated from a threatened grizzly bear (Ursus arctos population in Alberta, Canada, we quantified how variables representing habitat conditions and anthropogenic disturbance impact long-term stress in grizzly bears. We characterized spatial variability in male and female HCC point data using kernel density estimation and quantified variable influence on spatial patterns of male and female HCC stress surfaces using random forests. Separate models were developed for regions inside and outside of parks and protected areas to account for substantial differences in anthropogenic activity and disturbance within the study area. Variance explained in the random forest models ranged from 55.34% to 74.96% for males and 58.15% to 68.46% for females. Predicted HCC levels were higher for females compared to males. Generally, high spatially continuous female HCC levels were associated with parks and protected areas while low-to-moderate levels were associated with increased anthropogenic disturbance. In contrast, male HCC levels were low in parks and protected areas and low-to-moderate in areas with increased anthropogenic disturbance. Spatial variability in gender-specific HCC levels reveal that the type and intensity of external stressors are not uniform across the landscape and that male and female grizzly bears may be exposed to, or perceive, potential stressors differently. We suggest observed spatial patterns of long-term stress may be the result of the availability and distribution of foods related to disturbance features, potential sexual segregation in available habitat selection, and may not be influenced by sources of mortality which represent acute traumas. In this wildlife

  5. Spatial analysis of factors influencing long-term stress in the grizzly bear (Ursus arctos) population of Alberta, Canada.

    Science.gov (United States)

    Bourbonnais, Mathieu L; Nelson, Trisalyn A; Cattet, Marc R L; Darimont, Chris T; Stenhouse, Gordon B

    2013-01-01

    Non-invasive measures for assessing long-term stress in free ranging mammals are an increasingly important approach for understanding physiological responses to landscape conditions. Using a spatially and temporally expansive dataset of hair cortisol concentrations (HCC) generated from a threatened grizzly bear (Ursus arctos) population in Alberta, Canada, we quantified how variables representing habitat conditions and anthropogenic disturbance impact long-term stress in grizzly bears. We characterized spatial variability in male and female HCC point data using kernel density estimation and quantified variable influence on spatial patterns of male and female HCC stress surfaces using random forests. Separate models were developed for regions inside and outside of parks and protected areas to account for substantial differences in anthropogenic activity and disturbance within the study area. Variance explained in the random forest models ranged from 55.34% to 74.96% for males and 58.15% to 68.46% for females. Predicted HCC levels were higher for females compared to males. Generally, high spatially continuous female HCC levels were associated with parks and protected areas while low-to-moderate levels were associated with increased anthropogenic disturbance. In contrast, male HCC levels were low in parks and protected areas and low-to-moderate in areas with increased anthropogenic disturbance. Spatial variability in gender-specific HCC levels reveal that the type and intensity of external stressors are not uniform across the landscape and that male and female grizzly bears may be exposed to, or perceive, potential stressors differently. We suggest observed spatial patterns of long-term stress may be the result of the availability and distribution of foods related to disturbance features, potential sexual segregation in available habitat selection, and may not be influenced by sources of mortality which represent acute traumas. In this wildlife system and others

  6. Movement patterns and spatial segregation of two populations of lake trout Salvelinus namaycush in Lake Huron

    Science.gov (United States)

    Binder, Thomas; Marsden, J. Ellen; Riley, Stephen; Johnson, James E.; Johnson, Nicholas; He, Ji; Ebener, Mark P.; Holbrook, Christopher; Bergstedt, Roger A.; Bronte, Charles R.; Hayden, Todd A.; Krueger, Charles C.

    2017-01-01

    Movement ecology is an important component of life history and population dynamics, and consequently its understanding can inform successful fishery management decision-making. While lake trout populations in Lake Huron have shown signs of recovery from near extinction in recent years, knowledge of their movement behavior remains incomplete. We used acoustic telemetry to describe and compare movement patterns of two Lake Huron lake trout populations: Drummond Island and Thunder Bay. Both populations showed high spawning site fidelity, with no evidence of co-mingling during non-spawning season. Detections between spawning periods were mainly limited to receivers within 100 km of spawning locations, and suggested that the two populations likely remained segregated throughout the year. Drummond Island fish, which spawn inside the Drummond Island Refuge, primarily dispersed east into Canadian waters of Lake Huron, with 79–92% of fish being detected annually on receivers outside the refuge. In contrast, Thunder Bay fish tended to disperse south towards Saginaw Bay. Large proportions (i.e., > 80%) of both populations were available to fisheries outside the management zone containing their spawning location. Thunder Bay fish moved relatively quickly to overwinter habitat after spawning, and tended to repeat the same post-spawning movement behavior each year. The consistent, predictable movement of both populations across management zones highlights the importance of understanding population dynamics to effective management of Lake Huron lake trout.

  7. Spatial Distribution Pattern of Populations of Isoetes sinensis Palmer, an Endangered Quillwort in China

    Institute of Scientific and Technical Information of China (English)

    WANG Jingyuan; Robert Wahiti Gituru; CHEN Jinming; WANG Qingfeng

    2006-01-01

    The distribution pattern of Isoetes sinensis populations was investigated in relation to its biological characteristics such as age structure and regeneration mode, and the microenvironment. Contagious distribution pattern was found in populations of all sizes. Under the same climatic and site conditions, the heterogeneity of microenvironment resulting from the different depths of water and soil erosion significantly affected the type and scale of distribution patterns of Isoetes sinensis populations. Even at the same site, the center and the edges of the water body had different effects on the distribution pattern of the plants. As one of the co-dominants, the distribution of Isoetes sinensis in communities was affected by other dominant species, especially by the evergreen grass species. Water is the major factor determining the distribution pattern of Isoetes sinensis in various communities. The pattern of contagious distribution was observed in different size of populations of I. sinensis, however the Lloyd indices obtained for the populations of various sizes differed significantly.

  8. Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef.

    Science.gov (United States)

    Howells, Emily J; Willis, Bette L; Bay, Line K; van Oppen, Madeleine J H

    2013-07-01

    The dinoflagellate photosymbiont Symbiodinium plays a fundamental role in defining the physiological tolerances of coral holobionts, but little is known about the dynamics of these endosymbiotic populations on coral reefs. Sparse data indicate that Symbiodinium populations show limited spatial connectivity; however, no studies have investigated temporal dynamics for in hospite Symbiodinium populations following significant mortality and recruitment events in coral populations. We investigated the combined influences of spatial isolation and disturbance on the population dynamics of the generalist Symbiodinium type C2 (ITS1 rDNA) hosted by the scleractinian coral Acropora millepora in the central Great Barrier Reef. Using eight microsatellite markers, we genotyped Symbiodinium in a total of 401 coral colonies, which were sampled from seven sites across a 12-year period including during flood plume-induced coral bleaching. Genetic differentiation of Symbiodinium was greatest within sites, explaining 70-86% of the total genetic variation. An additional 9-27% of variation was explained by significant differentiation of populations among sites separated by 0.4-13 km, which is consistent with low levels of dispersal via water movement and historical disturbance regimes. Sampling year accounted for 6-7% of total genetic variation and was related to significant coral mortality following severe bleaching in 1998 and a cyclone in 2006. Only 3% of the total genetic variation was related to coral bleaching status, reflecting generally small (8%) reductions in allelic diversity within bleached corals. This reduction probably reflected a loss of genotypes in hospite during bleaching, although no site-wide changes in genetic diversity were observed. Combined, our results indicate the importance of disturbance regimes acting together with limited oceanographic transport to determine the genetic composition of Symbiodinium types within reefs.

  9. Phthalate pollution in an Amazonian rainforest.

    Science.gov (United States)

    Lenoir, Alain; Boulay, Raphaël; Dejean, Alain; Touchard, Axel; Cuvillier-Hot, Virginie

    2016-08-01

    Phthalates are ubiquitous contaminants and endocrine-disrupting chemicals that can become trapped in the cuticles of insects, including ants which were recognized as good bioindicators for such pollution. Because phthalates have been noted in developed countries and because they also have been found in the Arctic, a region isolated from direct anthropogenic influence, we hypothesized that they are widespread. So, we looked for their presence on the cuticle of ants gathered from isolated areas of the Amazonian rainforest and along an anthropogenic gradient of pollution (rainforest vs. road sides vs. cities in French Guiana). Phthalate pollution (mainly di(2-ethylhexyl) phthalate (DEHP)) was higher on ants gathered in cities and along road sides than on those collected in the pristine rainforest, indicating that it follows a human-mediated gradient of disturbance related to the use of plastics and many other products that contain phthalates in urban zones. Their presence varied with the ant species; the cuticle of Solenopsis saevissima traps higher amount of phthalates than that of compared species. However, the presence of phthalates in isolated areas of pristine rainforests suggests that they are associated both with atmospheric particles and in gaseous form and are transported over long distances by wind, resulting in a worldwide diffusion. These findings suggest that there is no such thing as a "pristine" zone.

  10. Scale dependence of the simulated impact of Amazonian deforestation on regional climate

    Science.gov (United States)

    Pitman, A. J.; Lorenz, R.

    2016-09-01

    Using a global climate model, Amazonian deforestation experiments are conducted perturbing 1, 9, 25, 81 and 121 grid points, each with 5 ensemble members. All experiments show warming and drying over Amazonia. The impact of deforestation on temperature, averaged either over the affected area or a wider area, decreases by a factor of two as the scale of the perturbation increases from 1 to 121 grid points. This is associated with changes in the surface energy balance and consequential impacts on the atmosphere above the regions deforested. For precipitation, as the scale of deforestation increases from 9 to 121 grid points, the reduction in rainfall over the perturbed area decreases from ˜1.5 to ˜1 mm d-1. However, if the surrounding area is considered and large deforestation perturbations made, compensatory increases in precipitation occur such that there is little net change. This is largely associated with changes in horizontal advection of moisture. Disagreements between climate model experiments on how Amazonian deforestation affects precipitation and temperature are, at least in part, due to the spatial scale of the region deforested, differences in the areas used to calculate averages and whether areas surrounding deforestation are included in the overall averages.

  11. Produção e predação de frutos em Aniba rosaeodora Ducke var. amazonica Ducke (Lauraceae em sistema de plantio sob floresta de terra firme na Amazônia Central Harvesting and fruit predation of a Aniba rosaeodora Ducke var. amazonica Ducke (Lauraceae ex situ tree population in a central Amazonian upland forest

    Directory of Open Access Journals (Sweden)

    Wilson Roberto Spironello

    2004-12-01

    Full Text Available O pau-rosa (Aniba rosaeodora vem sendo usado desde o século passado para extração de linalol, produto usado como fixador de perfumes. Por causa do extrativismo houve redução drástica em suas populações naturais. Somando a este fato, esta espécie possui padrão irregular de frutificação e, quando frutifica, os seus frutos são consumidos por animais. Estes aspectos foram estudados utilizando uma população de plantio sob sombra parcial de floresta primária. A produtividade das árvores variou de 40 a 1.600 frutos (n = 21 árvores. No geral, cerca de 42,5% foram removidos por frugívoros (6.770 frutos, n = 10 árvores. Dos frutos não removidos, 0,5% foram predados por vertebrados, 81,5% continham larvas de insetos, variando de 36-96% entre indivíduos. Uma espécie de Coleoptera ataca os frutos em estádio imaturo, enquanto outra (Heilipus sp. e uma espécie de Lepidoptera atacam os frutos em estádio final de desenvolvimento. Os resultados projetam perda de 59,5% dos frutos (54,5% por insetos passíveis de coleta. Considerando a importância econômica do pau-rosa faz-se necessário aumentar a disponibilidade de sementes para planos de manejo da espécie. Para se atingir tais objetivos são necessárias algumas medidas: 1 coleta prematura de frutos para maturação em laboratório; 2 utilização de métodos de controle de insetos adultos (em plantios e larvas (em frutos atacados; e 3 estudos de seleção genética para identificar plantas com maior resistência natural a pragas e doenças.The rosewood tree (Aniba rosaeodora has been exploited for linalol, a product used as a fixative by the perfume industry. As a result, its population has decreased to the point that it is at risk of extinction in some Amazonian areas. In addition, the species has an irregular phenological pattern and its fruits are a food source for animals. This study focused on the use an ex situ population planted under partial forest shade. The fruit set

  12. Mapping and modeling the urban landscape in Bangkok, Thailand: Physical-spectral-spatial relations of population-environmental interactions

    Science.gov (United States)

    Shao, Yang

    This research focuses on the application of remote sensing, geographic information systems, statistical modeling, and spatial analysis to examine the dynamics of urban land cover, urban structure, and population-environment interactions in Bangkok, Thailand, with an emphasis on rural-to-urban migration from rural Nang Rong District, Northeast Thailand to the primate city of Bangkok. The dissertation consists of four main sections: (1) development of remote sensing image classification and change-detection methods for characterizing imperviousness for Bangkok, Thailand from 1993-2002; (2) development of 3-D urban mapping methods, using high spatial resolution IKONOS satellite images, to assess high-rises and other urban structures; (3) assessment of urban spatial structure from 2-D and 3-D perspectives; and (4) an analysis of the spatial clustering of migrants from Nang Rong District in Bangkok and the neighborhood environments of migrants' locations. Techniques are developed to improve the accuracy of the neural network classification approach for the analysis of remote sensing data, with an emphasis on the spectral unmixing problem. The 3-D building heights are derived using the shadow information on the high-resolution IKONOS image. The results from the 2-D and 3-D mapping are further examined to assess urban structure and urban feature identification. This research contributes to image processing of remotely-sensed images and urban studies. The rural-urban migration process and migrants' settlement patterns are examined using spatial statistics, GIS, and remote sensing perspectives. The results show that migrants' spatial clustering in urban space is associated with the source village and a number of socio-demographic variables. In addition, the migrants' neighborhood environments in urban setting are modeled using a set of geographic and socio-demographic variables, and the results are scale-dependent.

  13. Bridging the divide: Middle Eastern walls and fences and the spatial governance of problem populations

    NARCIS (Netherlands)

    Pallister-Wilkins, P.

    2015-01-01

    Building on a long history of spatial control through walling in the region, walls and fences have been built in the Middle East in recent years to undertake a range of practices. Gated communities, residential and security compounds, anti-migrant walls, separation barriers and counter-insurgency fe

  14. Mapping the Centimeter-Scale Spatial Variability of PAHs and Microbial Populations in the Rhizosphere of Two Plants.

    Directory of Open Access Journals (Sweden)

    Amélia Bourceret

    Full Text Available Rhizoremediation uses root development and exudation to favor microbial activity. Thus it can enhance polycyclic aromatic hydrocarbon (PAH biodegradation in contaminated soils. Spatial heterogeneity of rhizosphere processes, mainly linked to the root development stage and to the plant species, could explain the contrasted rhizoremediation efficiency levels reported in the literature. Aim of the present study was to test if spatial variability in the whole plant rhizosphere, explored at the centimetre-scale, would influence the abundance of microorganisms (bacteria and fungi, and the abundance and activity of PAH-degrading bacteria, leading to spatial variability in PAH concentrations. Two contrasted rhizospheres were compared after 37 days of alfalfa or ryegrass growth in independent rhizotron devices. Almost all spiked PAHs were degraded, and the density of the PAH-degrading bacterial populations increased in both rhizospheres during the incubation period. Mapping of multiparametric data through geostatistical estimation (kriging revealed that although root biomass was spatially structured, PAH distribution was not. However a greater variability of the PAH content was observed in the rhizosphere of alfalfa. Yet, in the ryegrass-planted rhizotron, the Gram-positive PAH-degraders followed a reverse depth gradient to root biomass, but were positively correlated to the soil pH and carbohydrate concentrations. The two rhizospheres structured the microbial community differently: a fungus-to-bacterium depth gradient similar to the root biomass gradient only formed in the alfalfa rhizotron.

  15. Hierarchical spatial genetic structure in a distinct population segment of greater sage-grouse

    Science.gov (United States)

    Oyler-McCance, Sara J.; Casazza, Michael L.; Fike, Jennifer A.; Coates, Peter S.

    2014-01-01

    Greater sage-grouse (Centrocercus urophasianus) within the Bi-State Management Zone (area along the border between Nevada and California) are geographically isolated on the southwestern edge of the species’ range. Previous research demonstrated that this population is genetically unique, with a high proportion of unique mitochondrial DNA (mtDNA) haplotypes and with significant differences in microsatellite allele frequencies compared to populations across the species’ range. As a result, this population was considered a distinct population segment (DPS) and was recently proposed for listing as threatened under the U.S. Endangered Species Act. A more comprehensive understanding of the boundaries of this genetically unique population (where the Bi-State population begins) and an examination of genetic structure within the Bi-State is needed to help guide effective management decisions. We collected DNA from eight sampling locales within the Bi-State (N = 181) and compared those samples to previously collected DNA from the two most proximal populations outside of the Bi-State DPS, generating mtDNA sequence data and amplifying 15 nuclear microsatellites. Both mtDNA and microsatellite analyses support the idea that the Bi-State DPS represents a genetically unique population, which has likely been separated for thousands of years. Seven mtDNA haplotypes were found exclusively in the Bi-State population and represented 73 % of individuals, while three haplotypes were shared with neighboring populations. In the microsatellite analyses both STRUCTURE and FCA separate the Bi-State from the neighboring populations. We also found genetic structure within the Bi-State as both types of data revealed differences between the northern and southern part of the Bi-State and there was evidence of isolation-by-distance. STRUCTURE revealed three subpopulations within the Bi-State consisting of the northern Pine Nut Mountains (PNa), mid Bi-State, and White Mountains (WM) following a

  16. The Fleming-Viot limit of an interacting spatial population with fast density regulation

    CERN Document Server

    Gupta, Ankit

    2012-01-01

    We consider population models in which the individuals reproduce, die and also migrate in space. The population size scales according to some parameter $N$, which can have different interpretations depending on the context. Each individual is assigned a mass of 1/N and the total mass in the system is called population density. The dynamics has an intrinsic density regulation mechanism that drives the population density towards an equilibrium. We show that under a timescale separation between the slow migration mechanism and the fast density regulation mechanism, the population dynamics converges to a Fleming-Viot process as the scaling parameter $N \\to \\infty$. We first prove this result for a basic model in which the birth and death rates can only depend on the population density. In this case we obtain a neutral Fleming-Viot process. We then extend this model by including position-dependence in the birth and death rates, as well as, offspring dispersal and immigration mechanisms. We show how these extension...

  17. Carbon dynamics and ecosystem diversity of Amazonian peatlands

    Energy Technology Data Exchange (ETDEWEB)

    Laehteenoja, O.

    2011-07-01

    The overall aim was to initiate peatland research in Amazonia, which has been referred to as 'one of the large white spots on the global peatland map'. Specifically, the study was to clarify how common peat accumulation is on Amazonian floodplains, and how extensive and thick peat deposits can be encountered. Secondly, the intention was to study how rapidly Amazonian peatlands sequester carbon, and how much carbon they store and thirdly, to gain some understanding of the diversity of peatland ecosystem types and of the processes forming these ecosystems

  18. Noninvasive monitoring of androgens in male Amazonian manatee (Trichechus inunguis): biologic validation.

    Science.gov (United States)

    Amaral, Rodrigo de Souza; Rosas, Fernando Cesar Weber; Viau, Priscila; d'Affonsêca Neto, José Anselmo; da Silva, Vera Maria Ferreira; de Oliveira, Cláudio Alvarenga

    2009-09-01

    The Amazonian manatee (Trichechus inunguis) is endemic in the Amazonian basin and is the only exclusively fresh water sirenian. Historically hunted on a large scale, this species is now considered endangered, and studies on the reproductive physiology are critical for the improvement of reproductive management of captive and wild populations of manatees. The aim of this study was to verify the viability of androgen measurement in saliva, lacrimal, urine, and fecal samples of the Amazonian manatee by conducting a hormone challenge. Two adult male manatees (A-1 and A-2) were submitted to an experimentation protocol of 12 day (D1 to D10). On D0, the animals received an intramuscular injection of gonadotropin-releasing hormone (GnRH)-analogue. Salivary, lacrimal, urinary, and fecal samples were collected daily (between 0800 hours and 0900 hours) and frozen at -20 degrees C until assayed. Fecal samples were lyophilized, extracted with 80% methanol, and diluted in buffer before the radioimmunoassay (RIA). Urine samples underwent acid hydrolysis and were diluted in depleted bovine serum. Salivary and lacrimal samples were assayed without the extraction step. Hormonal assays were conducted with a commercial testosterone RIA kit. An androgen peak (> median + 2 interquartile range [IQR]) was observed in all matrices of both animals, although it was less prominent in the lacrimal samples of A-2. However, the fecal androgen peak (A-1 peak = 293.78 ng/g dry feces, median [IQR] = 143.58 [32.38] ng/g dry feces; A-2 peak = 686.72 ng/g dry feces, median [IQR] = 243.82 [193.16] ng/g dry feces) occurred later than urinary (A-1 peak = 648.16 ng/mg creatinine [Cr], median [IQR] = 23.88 [30.44] ng/mg Cr; A-2 peak = 370.44 ng/mg Cr, median [IQR] = 113.87 [117.73] ng/mg Cr) and salivary (A-1 peak = 678.89 pg/ml, median [IQR] = 103.69 [119.86] pg/ml; A-2 peak = 733.71 pg/ml, median [IQR] = 262.92 [211.44] pg/ml) androgen peaks. These intervals appear to be correlated with the long digesta

  19. Development of a spatially distributed model of fish population density for habitat assessment of rivers

    Science.gov (United States)

    Sui, Pengzhe; Iwasaki, Akito; Ryo, Masahiro; Saavedra, Oliver; Yoshimura, Chihiro

    2013-04-01

    Flow conditions play an important role in sustaining biodiversity of river ecosystem. However, their relations to freshwater fishes, especially to fish population density, have not been clearly described. This study, therefore, aimed to propose a new methodology to quantitatively link habitat conditions, including flow conditions and other physical conditions, to population density of fish species. We developed a basin-scale fish distribution model by integrating the concept of habitat suitability assessment with a distributed hydrological model (DHM) in order to estimate fish population density with particular attention to flow conditions. Generalized linear model (GLM) was employed to evaluate the relationship between population density of fish species and major environmental factors. The target basin was Sagami River in central Japan, where the river reach was divided into 10 sections by estuary, confluences of tributaries, and river-crossing structures (dams, weirs). The DHM was employed to simulate river discharge from 1998 to 2005, which was used to calculate 10 flow indices including mean discharge, 25th and 75th percentile discharge, duration of low and high flows, number of floods. In addition, 5 water quality parameters and 13 other physical conditions (such as basin area, river width, mean diameter of riverbed material, and number of river-crossing structures upstream and downstream) of each river section were considered as environmental variables. In case of Sagami River, 10 habitat variables among them were then selected based on their correlations to avoid multicollinearity. Finally, the best GLM was developed for each species based on Akaike's information criterion. As results, population densities of 16 fish species in Sagami River were modelled, and correlation coefficients between observed and calculated population densities for 10 species were more than 0.70. The key habitat factors for population density varied among fish species. Minimum

  20. Development of a population of cancer cells: Observation and modeling by a Mixed Spatial Evolutionary Games approach.

    Science.gov (United States)

    Świerniak, Andrzej; Krześlak, Michał; Student, Sebastian; Rzeszowska-Wolny, Joanna

    2016-09-21

    Living cells, like whole living organisms during evolution, communicate with their neighbors, interact with the environment, divide, change their phenotypes, and eventually die. The development of specific ways of communication (through signaling molecules and receptors) allows some cellular subpopulations to survive better, to coordinate their physiological status, and during embryonal development to create tissues and organs or in some conditions to become tumors. Populations of cells cultured in vitro interact similarly, also competing for space and nutrients and stimulating each other to better survive or to die. The results of these intercellular interactions of different types seem to be good examples of biological evolutionary games, and have been the subjects of simulations by the methods of evolutionary game theory where individual cells are treated as players. Here we present examples of intercellular contacts in a population of living human cancer HeLa cells cultured in vitro and propose an evolutionary game theory approach to model the development of such populations. We propose a new technique termed Mixed Spatial Evolutionary Games (MSEG) which are played on multiple lattices corresponding to the possible cellular phenotypes which gives the possibility of simulating and investigating the effects of heterogeneity at the cellular level in addition to the population level. Analyses performed with MSEG suggested different ways in which cellular populations develop in the case of cells communicating directly and through factors released to the environment.

  1. [Spatial distribution characteristics of urban potential population in Shenyang City based on QuickBird image and GIS].

    Science.gov (United States)

    Li, Jun-Ying; Hu, Yuan-Man; Chen, Wei; Liu, Miao; Hu, Jian-Bo; Zhong, Qiao-Lin; Lu, Ning

    2012-06-01

    Population is the most active factor affecting city development. To understand the distribution characteristics of urban population is of significance for making city policy decisions and for optimizing the layout of various urban infrastructures. In this paper, the information of the residential buildings in Shenyang urban area was extracted from the QuickBird remote sensing images, and the spatial distribution characteristics of the population within the Third-Ring Road of the City were analyzed, according to the social and economic statistics data. In 2010, the population density in different types of residential buildings within the Third-Ring Road of the City decreased in the order of high-storey block, mixed block, mixed garden, old multi-storey building, high-storey garden, multi-storey block, multi-storey garden, villa block, shanty, and villa garden. The vacancy rate of the buildings within the Third-Ring Road was more than 30%, meaning that the real estate market was seriously overstocked. Among the five Districts of Shenyang City, Shenhe District had the highest potential population density, while Tiexi District and Dadong District had a lower one. The gravity center of the City and its five Districts was also analyzed, which could provide basic information for locating commercial facilities and planning city infrastructure.

  2. Spatial-temporal Pattern and Population Driving Force of Land Use Change in Liupan Mountains Region, Southern Ningxia, China

    Institute of Scientific and Technical Information of China (English)

    QUAN Bin; M J M R(O)MKENS; LI Bichen; TAO Jianjun; LI Chaokui; YU Guanghui; CHEN Qichun

    2008-01-01

    The Liupan Mountains is located in the southern Ningxia Hui Autonomous Region of China, which forms an important dividing line between iandforms and bio-geographic regions. The populated part of the Liupan Mountains region has suffered tremendous ecological damages over time due to population pressure, excessive demand and inap-propriate use of agricultural land resources. In this paper, datasets of land use between 1990 and 2000 were obtained from Landsat TM imagery, and then spatial models were used to characterize landscape conditions. Also, the relation-ship between the population density and land use/cover change (LUCC) was analyzed. Results indicate that cropland, forestland, and urban areas have increased by 44,186ha, 9001ha and 1550ha, respectively while the grassland area has appreciably decreased by 54,025ha in the study period. The decrease in grassland was most notable. Of the grassland lost, 49.4% was converted into cropland. The largest annual land conversion rate in the study area was less than 2%. These changes are attributed to industrial and agricultural development and population growth. To improve the eco-economic conditions in the study region, population control, urbanization and development of an ecological friendly agriculture were suggested.

  3. Small-scale spatial variation in population dynamics and fishermen response in a coastal marine fishery.

    Directory of Open Access Journals (Sweden)

    Jono R Wilson

    Full Text Available A major challenge for small-scale fisheries management is high spatial variability in the demography and life history characteristics of target species. Implementation of local management actions that can reduce overfishing and maximize yields requires quantifying ecological heterogeneity at small spatial scales and is therefore limited by available resources and data. Collaborative fisheries research (CFR is an effective means to collect essential fishery information at local scales, and to develop the social, technical, and logistical framework for fisheries management innovation. We used a CFR approach with fishing partners to collect and analyze geographically precise demographic information for grass rockfish (Sebastes rastrelliger, a sedentary, nearshore species harvested in the live fish fishery on the West Coast of the USA. Data were used to estimate geographically distinct growth rates, ages, mortality, and length frequency distributions in two environmental subregions of the Santa Barbara Channel, CA, USA. Results indicated the existence of two subpopulations; one located in the relatively cold, high productivity western Channel, and another in the relatively warm, low productivity eastern Channel. We parameterized yield per recruit models, the results of which suggested nearly twice as much yield per recruit in the high productivity subregion relative to the low productivity subregion. The spatial distribution of fishing in the two environmental subregions demonstrated a similar pattern to the yield per recruit outputs with greater landings, effort, and catch per unit effort in the high productivity subregion relative to the low productivity subregion. Understanding how spatial variability in stock dynamics translates to variability in fishery yield and distribution of effort is important to developing management plans that maximize fishing opportunities and conservation benefits at local scales.

  4. Spatial genetic structure and restricted gene flow in bed bugs (Cimex lectularius) populations in France.

    Science.gov (United States)

    Akhoundi, Mohammad; Kengne, Pierre; Cannet, Arnaud; Brengues, Cécile; Berenger, Jean-Michel; Izri, Arezki; Marty, Pierre; Simard, Frederic; Fontenille, Didier; Delaunay, Pascal

    2015-08-01

    Bed bugs (Cimex lectularius) are resurgent blood-sucking ectoparasites that are currently increasing at a rapid rate, particularly in industrialized countries, such as France. Despite the rapid spread of bed bugs, there is a lack of knowledge concerning the population structure and gene flow among C. lectularius populations in France. To fill this gap, a genetic study was conducted using 183 C. lectularius from 14 populations of bed bugs collected in a hotel and in individual apartments in the French Riviera and in the Saint Ouen suburb of Paris. The samples were genotyped using an isolated set of six polymorphic microsatellite loci, including five new loci which were newly isolated and chosen based on prior successful amplification, and one previously described loci (bb15b). The low genetic diversity observed in the samples (of one to five alleles) suggested that most of prospected populations were established by only a few individuals, possibly from a single mated female. The overall genetic differentiation was high and statistically significant (FST=0.556, plectularius populations in France; however, the available information should be expanded in further studies.

  5. The Stellar Populations of Low Luminosity Active Galactic Nuclei. III: Spatially Resolved Spectral Properties

    CERN Document Server

    Fernandes, R C; Storchi-Bergmann, T; Martins, L P; Schmitt, H

    2004-01-01

    In a recent survey of the stellar populations of LINERS and LINER/HII Transition Objects (TOs) we identified a numerous class of nuclei which stand out because of their conspicuous 10^8-9 yr populations. These objects were called ``Young-TOs'', since they all have TO-like emission line ratios. In this paper we investigate the radial variations of spectral properties in Low Luminosity AGN. Our analysis is based on high S/N, 3500-5500 A, long-slit spectra for 47 galaxies. The data probe distances of typically up to 850 pc from the nucleus with a resolution of ~ 100 pc and S/N ~ 30. Stellar population gradients are mapped by the radial profiles of absorption line equivalent widths and colours along the slit. These variations are further analyzed by means of a decomposition of each spectrum in terms of template galaxies representative of very young (<= 10^7 yr), intermediate age (10^8-9 yr) and old (10^10 yr) populations. Our main findings are: (1) Significant stellar population gradients are found almost excl...

  6. The Impacts of Highway Expansion on Population Change: An Integrated Spatial Approach

    Science.gov (United States)

    Chi, Guangqing

    2010-01-01

    The effects of highways on transforming human society and promoting population change have been investigated in several disciplines, including geography, sociology, economics, and planning. Currently, the primary highway construction activity in the nation is highway expansion; however, this expansion has not been the focus of much of the existing…

  7. Spatial differentiation of population development in a declining region: the case of Saarland

    NARCIS (Netherlands)

    Hoekveld, J.J.

    2015-01-01

    We increasingly understand the causes of urban population decline: these can be, among others, processes of deindustrialisation, decreasing fertility or the succession of a city through the stages of urban life as the city matures. However, we are still insufficiently able to explain why differences

  8. Macroecological factors explain large-scale spatial population patterns of ancient agriculturalists

    NARCIS (Netherlands)

    Xu, C.; Chen, B.; Abades, S.; Reino, L.; Teng, S.; Ljungqvist, F.C.; Huang, Z.Y.X.; Liu, X.

    2015-01-01

    Aim: It has been well demonstrated that the large-scale distribution patterns of numerous species are driven by similar macroecological factors. However, understanding of this topic remains limited when applied to our own species. Here we take a large-scale look at ancient agriculturalist population

  9. Effect of culling and vaccination on bovine tuberculosis infection in a European badger (Meles meles) population by spatial simulation modelling.

    Science.gov (United States)

    Abdou, Marwa; Frankena, Klaas; O'Keeffe, James; Byrne, Andrew W

    2016-03-01

    The control of bovine tuberculosis (bTB) in cattle herds in the Republic of Ireland (ROI) is partially hindered by spill-back infection from wild badgers (Meles meles). The aim of this study was to determine the relative effects of interventions (combinations of culling and/or vaccination) on bTB dynamics in an Irish badger population. A spatial agent-based stochastic simulation model was developed to evaluate the effect of various control strategies for bovine tuberculosis in badgers: single control strategies (culling, selective culling, vaccination, and vaccine baits), and combined strategies (Test vaccinate/cull (TVC)), split area approaches using culling and vaccination, or selective culling and vaccination, and mixed scenarios where culling was conducted for five years and followed by vaccination or by a TVC strategy. The effect of each control strategy was evaluated over a 20-year period. Badger control was simulated in 25%, 50%, and 75% area (limited area strategy) or in the entire area (100%, wide area strategy). For endemic bTB, a culling strategy was successful in eradicating bTB from the population only if applied as an area-wide strategy. However, this was achieved only by risking the extinction of the badger population. Selective culling strategies (selective culling or TVC) mitigated this negative impact on the badger population's viability. Furthermore, both strategies (selective culling and TVC) allowed the badger population to recover gradually, in compensation for the population reduction following the initial use of removal strategies. The model predicted that vaccination can be effective in reducing bTB prevalence in badgers, when used in combination with culling strategies (i.e. TVC or other strategies). If fecundity was reduced below its natural levels (e.g. by using wildlife contraceptives), the effectiveness of vaccination strategies improved. Split-area simulations highlighted that interventions can have indirect effects (e.g. on

  10. Amazonian Buriti oil: chemical characterization and antioxidant potential

    Directory of Open Access Journals (Sweden)

    Speranza, P.

    2016-06-01

    Full Text Available Buriti oil is an example of an Amazonian palm oil of economic importance. The local population uses this oil for the prevention and treatment of different diseases; however, there are few studies in the literature that evaluate its properties. In this study, detailed chemical and antioxidant properties of Buriti oil were determined. The predominant fatty acid was oleic acid (65.6% and the main triacylglycerol classes were tri-unsaturated (50.0% and di-unsaturated-mono-saturated (39.3% triacylglycerols. The positional distribution of the classes of fatty acids on the triacylglycerol backbone indicated a saturated and unsaturated fatty acid relationship similar in the three-triacylglycerol positions. All tocopherol isomers were present, with a total content of 2364.1 mg·kg−1. α-tocopherol constitutes 48% of the total tocopherol content, followed by γ- tocopherol (45%. Total phenolic (107.0 mg gallic acid equivalent·g−1 oil and β-carotene (781.6 mg·kg−1 were particularly high in this oil. The highest antioxidant activity against the free radical 1,1-diphenyl-2-picrylhydrazyl (DPPH was obtained at an oil concentration of 50 mg·mL−1 (73.15%. The antioxidant activity evaluated by the Oxygen Radical Absorbance Capacity (ORAC was 95.3 μmol Trolox equivalent·g−1 oil. These results serve to present Buriti oil as an Amazonian resource for cosmetic, food and pharmaceuticals purposes.El aceite de Buriti es un ejemplo de aceite de palma amazónica de gran importancia económica. La población local utiliza este aceite para la prevención y el tratamiento de diferentes enfermedades; sin embargo, hay pocos estudios científicos que evalúen sus propiedades. En este estudio, se determinaron las propiedades antioxidantes del aceite de Buriti. El ácido graso predominante fue el oleico (65,6 % y las principales clases de triglicéridos fueron tri-insaturadas (50,0 % y Di-insaturados-mono-saturada (39,3 %. La distribución posicional de las

  11. Population change and farm dependence: temporal and spatial variation in the U.S. Great Plains, 1900-2000.

    Science.gov (United States)

    White, Katherine J Curtis

    2008-05-01

    I investigate the relationship between county population change and farm dependence in the Great Plains region during the twentieth century, using spatial data analysis techniques. This research is rooted in a long-standing sociological and demographic interest in population responses to economic transitions and informs the theoretical understanding of urbanization processes. Using census and environmental data, the analysis challenges earlier assertions of a simple transition in the relationship between farm dependence and population change that accompanied modern technological advancements, namely tractors (the mechanization thesis). Rather than observing the proposed positive-to-negative shift, study results show a negative association throughout the pre- and post-mechanization periods. Partial support is found if the thesis is revised to consider the relationship between population change and the change in farm dependence rather than the level of farm dependence. Findings show mixed support for an alternative argument that nonfarm industries moderate the influence of farm dependence (the industry complex thesis). In contrast to earlier applications of the thesis, industrial relations in the Great Plains context are characterized by specialization rather than cooperation.

  12. Population ecology of Paepalanthus polyanthus (Bong. Kunth: temporal variation in the pattern of spatial distribution

    Directory of Open Access Journals (Sweden)

    Tânia Tarabini Castellani

    2004-11-01

    Full Text Available The temporal variation in density and pattern of spatial distribution of Paepalanthus polyanthus (BONG. Kunth (Eriocaulaceae were evaluated at a determinate sand dune. This study was carried out over a period of five years, at three permanent plots of 25m2 in a sand dune slack at Joaquina Beach, Florianópolis, SC, Brazil. There were strong density fluctuations throughout these years. In areas 1, 2 and 3, the densities changed from 10.4, 2.2 and 1.8 plants/m2 in December 1986 to 75.8, 11.4 and 45.6 plants/m2 in December 1991. Area 3, situated on an elevated site, presented greater variation in density, with no live plants in December 1989 and 102.2 plants/m2 at the recruitment observed in May 1990. Despite these density fluctuations, the pattern of spatial distribution was always aggregated (Id>1, P<0.05. The greatest Id values occurred in periods of low density and not in those of high density, associated with seedling recruitment. Factors such as high seed production with low dispersal, massive germination in moit years and a comparatively high death rate of seedlings at sites more subject to flooding or more distant from the water table proved themselves able to promote this aggregate pattern and increase it during plant development.

  13. Mapping long-term spatial trends of the Taimyr wild reindeer population

    Directory of Open Access Journals (Sweden)

    Andrey N. Petrov

    2013-03-01

    Full Text Available This report presents preliminary results of mapping and analyzing wild reindeer spatial dynamics in Taimyr, Russia. We collected, spatially referenced, and systematized comprehensive aerial and land survey information spanning from 1969 to 2003, which is the most complete long-term data available about a wild reindeer herd in Eurasia. The report introduces some of the mapping products and presents a summary of our observations on spatiotemporal changes in reindeer distribution and migration. Using these data and new digital products in the GIS (Geographic Information Systems environment, we were able to observe the long-term shift of the Taimyr Reindeer Herd's summer, winter, and calving areas to the east and south with a simultaneous expansion of the habitat. We identified and confirmed locations of large reindeer concentrations (herds seasonally formed throughout the study period. Using the most recent summer survey data (2009 we also were able to confirm the existence of two major migration flows in the fall: eastern (most reindeer and western.

  14. Towards an understanding of tree diversity in Amazonian forests

    NARCIS (Netherlands)

    Stropp Carneiro, J.

    2011-01-01

    Amazonian forests harbor the highest biodiversity of all terrestrial ecosystems on Earth. The origin of this extraordinary biodiversity and its current distribution are recently becoming better understood. Still, our knowledge of the contribution of processes operating at different temporal and spat

  15. Fungal community assembly in the Amazonian Dark Earth

    NARCIS (Netherlands)

    Lucheta, A.R.; Souza Cannavan, F.S.; Roesch, L.; Tsai, S.M.; Kuramae, E.E.

    2016-01-01

    Here, we compare the fungal community composition and diversity in Amazonian Dark Earth (ADE) and the respective non-anthropogenic origin adjacent (ADJ) soils from four different sites in Brazilian Central Amazon using pyrosequencing of 18S ribosomal RNA (rRNA) gene. Fungal community composition in

  16. New species of Monostylis Tulasne (Podostemaceae from the Amazonian region

    Directory of Open Access Journals (Sweden)

    Aldaléa Sprada Tavares

    2015-09-01

    Full Text Available Until now, Monostylis Tulasne (Podostemaceae was considered monospecific, containing only M. capillacea Tulasne. However, recent field expeditions and an analysis of samples from the Amazonian region revealed three new species, Monostylis aripuanensis, M. goeldiana and M. paraensis. The present paper provides detailed morphological descriptions, illustrations, habitat data, comparative taxonomic comments and a dichotomous key to the species.

  17. A Miocene perspective on the evolution of the Amazonian biota

    NARCIS (Netherlands)

    Wesselingh, F.P.; Salo, J.A.

    2006-01-01

    Between c. 23 and 8 Ma, western Amazonia was occupied by the vast Pebas long-lived lake/wetland system. The Pebas system had a variety of influences over the evolution of Miocene and modern Amazonian biota; it formed a barrier for the exchange of terrestrial biota, a pathway for the transition of ma

  18. SPATIAL DISTRIBUTION AND POPULATION STRUCTURE OF PALMS (ARECACEAE IN A FOREST FRAGMENT OF LOWLAND DENSE HUMID FOREST IN SOUTH BRAZIL

    Directory of Open Access Journals (Sweden)

    Laura Cappelatti

    2015-01-01

    Full Text Available In the state of Rio Grande do Sul, the Dense Humid Forest is reduced to less than 5% of its original cover. However, it still has the highest richness of palms in this state, which constitute an important and economically relevant group. Environmental and demographic aspects of plant populations in forest fragments are of great importance for their management and conservation. We conducted a study on the spatial distribution and age structure of five palm species in a forest fragment at the municipality of Três Cachoeiras, in the north coast of Rio Grande do Sul. We delimited 25 10×10 m plots and counted the number of individuals in the stages of seedling, juvenile and adult for each palm species. Aggregation Indices were calculated with software SADIEShell. We performed variation partitioning analyses among species distribution and environmental variables canopy openness and soil moisture. A total of 1,443 plants were counted and the most abundant species was Euterpe edulis. The average density was of 57.72 ind. 100 m-2. Three species showed a pattern of “inverse J”, which indicated that they have a potential for regenerating in that palm community. The predominant spatial pattern was aggregated (Ia>1 and canopy openness did not influence species abundances. Only the distribution of Bactris setosa and Geonoma gamiova, both understory species, was explained by soil moisture, suggesting that other abiotic or biotic factors may be influencing the spatial arrangement of the canopy species.

  19. Effective spatial scales for evaluating environmental determinants of population density in Yakushima macaques

    OpenAIRE

    Agetsuma, Naoki; Koda, Ryosuke; Tsujino, Riyou; Agetsuma-Yanagihara, Yoshimi

    2015-01-01

    Population densities of wildlife species tend to be correlated with resource productivity of habitats. However, wildlife density has been greatly modified by increasing human influences. For effective conservation, we must first identify the significant factors that affect wildlife density, and then determine the extent of the areas in which the factors should be managed. Here, we propose a protocol that accomplishes these two tasks. The main threats to wildlife are thought to be habitat alte...

  20. New methods for analysis of spatial distribution and coaggregation of microbial populations in complex biofilms.

    Science.gov (United States)

    Almstrand, Robert; Daims, Holger; Persson, Frank; Sörensson, Fred; Hermansson, Malte

    2013-10-01

    In biofilms, microbial activities form gradients of substrates and electron acceptors, creating a complex landscape of microhabitats, often resulting in structured localization of the microbial populations present. To understand the dynamic interplay between and within these populations, quantitative measurements and statistical analysis of their localization patterns within the biofilms are necessary, and adequate automated tools for such analyses are needed. We have designed and applied new methods for fluorescence in situ hybridization (FISH) and digital image analysis of directionally dependent (anisotropic) multispecies biofilms. A sequential-FISH approach allowed multiple populations to be detected in a biofilm sample. This was combined with an automated tool for vertical-distribution analysis by generating in silico biofilm slices and the recently developed Inflate algorithm for coaggregation analysis of microbial populations in anisotropic biofilms. As a proof of principle, we show distinct stratification patterns of the ammonia oxidizers Nitrosomonas oligotropha subclusters I and II and the nitrite oxidizer Nitrospira sublineage I in three different types of wastewater biofilms, suggesting niche differentiation between the N. oligotropha subclusters, which could explain their coexistence in the same biofilms. Coaggregation analysis showed that N. oligotropha subcluster II aggregated closer to Nitrospira than did N. oligotropha subcluster I in a pilot plant nitrifying trickling filter (NTF) and a moving-bed biofilm reactor (MBBR), but not in a full-scale NTF, indicating important ecophysiological differences between these phylogenetically closely related subclusters. By using high-resolution quantitative methods applicable to any multispecies biofilm in general, the ecological interactions of these complex ecosystems can be understood in more detail.

  1. Vegetation of Mangroves: Spatial and Temporal Pattern of its Dominant Populations in Futian National Nature Reserve

    Institute of Scientific and Technical Information of China (English)

    Li Zhenji; Zheng Wenjiao; Yang Zhiwei; Lin Yiming; Lin Peng

    2003-01-01

    The community characteristics of mangroves in the Futian Nature Reserve,Shenzhen, China are given based on surveying of 33 quadrats in 4 transects which stretch from the higher tidal zone to the lower tidal zone. The results show that there are 6 community types in this area: Kandelia cardel association, Avicennia marina association, A egiceras corniculatum association, Kardelia cardel + Aegiceras corniculatum association,Aegiceras corniculatum + Kandelia candel association and Acanthus ilicifolius association.Kandelia candel, Aegiceras corniculatum and Avicennia marina dominate the typical quadrats. Kandelia candel can be seen at almost all quadrats, Aegiceras corniculatum distributes mostly toward the estuary and the higher tidal zone, Avicennia marina distributes mostly toward the bay and the lower tidal zone, Bruguiera gymnorrhiza occasionally occurs toward the Estuary with one or several individuals, Acanthus ilicifolius was common toward the higher tidal zone, as an accompanying species, Derris trifoliata was common in many mature quadrats. Totally, 6 species of mangrove plants and 3 species of semi-mangrove plants appear in this research area. From the higher tidal zone to the lower tidal zone, the average diameter and basal area of mangrove trees increase gradually. According to the results, the Avicennia marina dominates in average diameter and basal area, and the Aegiceras corniculatum trees are on the contrary. From the transect 1 to the transect 4, the importance value of Avicennia marina, Bruguiera gymnorrhiza and Kandelia candel decreases, and Ae giceras corniculatum increases. In this area, the Kandelia candel population and Aegiceras corniculatum population are developing populations with many seedlings and saplings, but the Avicennia marina population is in a mature stage with few seedlings and not so many total individuals. According to this research, we suppose that Aegiceras corniculatum should be developed toward the estuary and the Avicennia

  2. Emerging ecosystems change the spatial distribution of top carnivores even in poorly populated areas.

    Directory of Open Access Journals (Sweden)

    Facundo Barbar

    Full Text Available Humans affect biological diversity and species distribution patterns by modifying resource availability and generating novel environments where generalist species benefit and specialist species are rare. In particular, cities create local homogenization while roads fragment habitat, although both processes can increase food availability for some species that may be able to take advantage of this new source. We studied space use by birds of prey in relation to human construction, hypothesizing that these birds would be affected even in poorly populated areas. We worked in Northwestern Patagonia, Argentina, which is experiencing a high population growth, but still having very large unpopulated areas. We related the presence of raptors with different sources of human disturbance and found that both the abundance and richness of these birds were positively associated with anthropogenic environments. These results are driven mostly by a strong association between the medium-sized generalist species and these novel environments (mainly roads and cities. This may create an imbalance in intra-guild competitive abilities, modifying the normal structures of top carnivore hierarchies. Indeed, the structure of raptor communities seems to be changing, even in poorly populated areas, with anthropogenic constructions seemingly producing changes in wild areas more promptly than thought, a cause for concern in ecosystems conservation issues.

  3. On the Spatial Distribution of Stellar Populations in the Large Magellanic Cloud

    CERN Document Server

    Harris, J; Harris, Jason; Zaritsky, Dennis

    1999-01-01

    We measure the angular correlation function of stars in a region of the Large Magellanic Cloud (LMC) that spans 2 degrees by 1.5 degrees. We find that the correlation functions of stellar populations are represented well by exponential functions of the angular separation for separations between 2 and 40 arcmin (corresponding to ~ 30 pc and 550 pc for an LMC distance of 50 kpc). The inner boundary is set by the presence of distinct, highly correlated structures, which are the more familiar stellar clusters, and the outer boundary is set by the observed region's size and the presence of two principal centers of star formation within the region. We also find that the normalization and scale length of the correlation function changes systematically with the mean age of the stellar population. The existence of positive correlation at large separations (~300 pc), even in the youngest population, argues for large-scale hierarchical structure in current star formation. The evolution of the angular correlation toward ...

  4. The Spatial Structure of Young Stellar Clusters. II. Total Young Stellar Populations

    CERN Document Server

    Kuhn, Michael A; Feigelson, Eric D

    2015-01-01

    We investigate the intrinsic stellar populations (estimated total numbers of OB and pre-main-sequence stars down to 0.1 Mo) that are present in 17 massive star-forming regions (MSFRs) surveyed by the MYStIX project. The study is based on the catalog of >31,000 MYStIX Probable Complex Members with both disk-bearing and disk-free populations, compensating for extinction, nebulosity, and crowding effects. Correction for observational sensitivities is made using the X-ray Luminosity Function (XLF) and the near-infrared Initial Mass Function (IMF)--a correction that is often not made by infrared surveys of young stars. The resulting maps of the projected structure of the young stellar populations, in units of intrinsic stellar surface density, allow direct comparison between different regions. Several regions have multiple dense clumps, similar in size and density to the Orion Nebula Cluster. The highest projected density of ~34,000 stars/pc^2 is found in the core of the RCW38 cluster. Histograms of surface densit...

  5. Emerging ecosystems change the spatial distribution of top carnivores even in poorly populated areas.

    Science.gov (United States)

    Barbar, Facundo; Werenkraut, Victoria; Morales, Juan Manuel; Lambertucci, Sergio Agustín

    2015-01-01

    Humans affect biological diversity and species distribution patterns by modifying resource availability and generating novel environments where generalist species benefit and specialist species are rare. In particular, cities create local homogenization while roads fragment habitat, although both processes can increase food availability for some species that may be able to take advantage of this new source. We studied space use by birds of prey in relation to human construction, hypothesizing that these birds would be affected even in poorly populated areas. We worked in Northwestern Patagonia, Argentina, which is experiencing a high population growth, but still having very large unpopulated areas. We related the presence of raptors with different sources of human disturbance and found that both the abundance and richness of these birds were positively associated with anthropogenic environments. These results are driven mostly by a strong association between the medium-sized generalist species and these novel environments (mainly roads and cities). This may create an imbalance in intra-guild competitive abilities, modifying the normal structures of top carnivore hierarchies. Indeed, the structure of raptor communities seems to be changing, even in poorly populated areas, with anthropogenic constructions seemingly producing changes in wild areas more promptly than thought, a cause for concern in ecosystems conservation issues.

  6. Stochastic weighted particle methods for population balance equations with coagulation, fragmentation and spatial inhomogeneity

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Kok Foong [Department of Chemical Engineering and Biotechnology, University of Cambridge, New Museums Site, Pembroke Street, Cambridge CB2 3RA (United Kingdom); Patterson, Robert I.A.; Wagner, Wolfgang [Weierstrass Institute for Applied Analysis and Stochastics, Mohrenstraße 39, 10117 Berlin (Germany); Kraft, Markus, E-mail: mk306@cam.ac.uk [Department of Chemical Engineering and Biotechnology, University of Cambridge, New Museums Site, Pembroke Street, Cambridge CB2 3RA (United Kingdom); School of Chemical and Biomedical Engineering, Nanyang Technological University, 62 Nanyang Drive, Singapore, 637459 (Singapore)

    2015-12-15

    Graphical abstract: -- Highlights: •Problems concerning multi-compartment population balance equations are studied. •A class of fragmentation weight transfer functions is presented. •Three stochastic weighted algorithms are compared against the direct simulation algorithm. •The numerical errors of the stochastic solutions are assessed as a function of fragmentation rate. •The algorithms are applied to a multi-dimensional granulation model. -- Abstract: This paper introduces stochastic weighted particle algorithms for the solution of multi-compartment population balance equations. In particular, it presents a class of fragmentation weight transfer functions which are constructed such that the number of computational particles stays constant during fragmentation events. The weight transfer functions are constructed based on systems of weighted computational particles and each of it leads to a stochastic particle algorithm for the numerical treatment of population balance equations. Besides fragmentation, the algorithms also consider physical processes such as coagulation and the exchange of mass with the surroundings. The numerical properties of the algorithms are compared to the direct simulation algorithm and an existing method for the fragmentation of weighted particles. It is found that the new algorithms show better numerical performance over the two existing methods especially for systems with significant amount of large particles and high fragmentation rates.

  7. Effects of encounter in a population of spatial prisoner's dilemma players.

    Science.gov (United States)

    Zhang, Chunyan; Zhang, Jianlei; Xie, Guangming; Wang, Long

    2011-11-01

    We study the evolution of cooperation in spatial prisoner's dilemma games, whereby each player extends its interaction scope by trying to interact with a certain number of encounters randomly chosen from its non-neighbors, in addition to its permanently linked nearest neighbors. Furthermore, the non-neighbors treat the initiative interactions in two scenarios: definitely accepting that from the cooperators, whereas guardedly interacting with defectors with an acceptance probability which may take arbitrary value in [0,1]. Importantly, our results reveal that the proposed encounter mechanism is a potent extrinsic factor that is able to boost cooperation when appropriately adjusting the values of the encounter number and acceptance probability, though rational players would always defect in one-shot encounters, regardless of the action from the counterparts. We hope our studies may help understand that the proposed encounter mechanism is also an important ingredient of a flourishing cooperative society.

  8. InterSpread Plus: a spatial and stochastic simulation model of disease in animal populations.

    Science.gov (United States)

    Stevenson, M A; Sanson, R L; Stern, M W; O'Leary, B D; Sujau, M; Moles-Benfell, N; Morris, R S

    2013-04-01

    We describe the spatially explicit, stochastic simulation model of disease spread, InterSpread Plus, in terms of its epidemiological framework, operation, and mode of use. The input data required by the model, the method for simulating contact and infection spread, and methods for simulating disease control measures are described. Data and parameters that are essential for disease simulation modelling using InterSpread Plus are distinguished from those that are non-essential, and it is suggested that a rational approach to simulating disease epidemics using this tool is to start with core data and parameters, adding additional layers of complexity if and when the specific requirements of the simulation exercise require it. We recommend that simulation models of disease are best developed as part of epidemic contingency planning so decision makers are familiar with model outputs and assumptions and are well-positioned to evaluate their strengths and weaknesses to make informed decisions in times of crisis.

  9. The structure of the Amazonian craton: Available geophysical evidence

    Science.gov (United States)

    Rosa, João Willy Corrêa; Rosa, José Wilson Corrêa; Fuck, Reinhardt A.

    2016-10-01

    The Amazonian craton, which covers a large area of South America, and is thought to have been stable since the end of the Mesoproterozoic, has recently benefited from a series of regional geophysical surveys. The Amazonian craton comprises the northern Guyana shield and the southern Central Brazil shield. It has become the main subject of seismological studies aiming to determine crustal thickness. Moho thickness maps that cover a large part of the South American continent summarize these studies. Receiver function studies, aided by surface wave dispersion tomography, were also useful tools applied in the region over the past decade. These have been improved by the addition of temporary and permanent regional seismological arrays and stations. An interesting NNW-SSE Moho depth anomaly, pointing to crustal thickening of up to 60 km in the central Guyana shield and a 50 km thick anomaly of the southern Central Brazil shield were recently identified. Areas with crustal thickening correspond to Paleoproterozoic magmatic arcs. The upper mantle seismic anisotropy in part of the region has been determined from SKS splitting studies. The currently available seismic anisotropy information shows that the orientation of the determined anisotropic axis is related to the frozen in anisotropy hypothesis for the Amazonian craton. The orientation of the anisotropic axis shows no relation to the current South American plate motion in the Amazonian craton. Most recently, detailed information for the two shields has benefited from a series of high-resolution, regional aerogeophysical surveys, made available by CPRM, the Brazilian Geological Survey. In addition to the mentioned contribution from seismology for imaging deeper crustal structures, regional gravity surveys have been expanded, adding to previous Bouguer anomaly maps, and deep drilling information from early exploration efforts have been compiled for the Amazon basin, which covers the Amazonian craton separating the Guyana

  10. Spatial ecology of the critically endangered Fijian crested iguana, Brachylophus vitiensis, in an extremely dense population: implications for conservation.

    Directory of Open Access Journals (Sweden)

    Suzanne F Morrison

    Full Text Available The Critically Endangered Fijian crested iguana, Brachylophus vitiensis, occurs at extreme density at only one location, with estimates of >10,000 iguanas living on the 70 hectare island of Yadua Taba in Fiji. We conducted a mark and recapture study over two wet seasons, investigating the spatial ecology and intraspecific interactions of the strictly arboreal Fijian crested iguana. This species exhibits moderate male-biased sexual size dimorphism, which has been linked in other lizard species to territoriality, aggression and larger male home ranges. We found that male Fijian crested iguanas exhibit high injury levels, indicative of frequent aggressive interactions. We did not find support for larger home range size in adult males relative to adult females, however male and female residents were larger than roaming individuals. Males with established home ranges also had larger femoral pores relative to body size than roaming males. Home range areas were small in comparison to those of other iguana species, and we speculate that the extreme population density impacts considerably on the spatial ecology of this population. There was extensive home range overlap within and between sexes. Intersexual overlap was greater than intrasexual overlap for both sexes, and continuing male-female pairings were observed among residents. Our results suggest that the extreme population density necessitates extensive home range overlap even though the underlying predictors of territoriality, such as male biased sexual size dimorphism and high aggression levels, remain. Our findings should be factored in to conservation management efforts for this species, particularly in captive breeding and translocation programs.

  11. Spatial ecology of the critically endangered Fijian crested iguana, Brachylophus vitiensis, in an extremely dense population: implications for conservation.

    Science.gov (United States)

    Morrison, Suzanne F; Biciloa, Pita; Harlow, Peter S; Keogh, J Scott

    2013-01-01

    The Critically Endangered Fijian crested iguana, Brachylophus vitiensis, occurs at extreme density at only one location, with estimates of >10,000 iguanas living on the 70 hectare island of Yadua Taba in Fiji. We conducted a mark and recapture study over two wet seasons, investigating the spatial ecology and intraspecific interactions of the strictly arboreal Fijian crested iguana. This species exhibits moderate male-biased sexual size dimorphism, which has been linked in other lizard species to territoriality, aggression and larger male home ranges. We found that male Fijian crested iguanas exhibit high injury levels, indicative of frequent aggressive interactions. We did not find support for larger home range size in adult males relative to adult females, however male and female residents were larger than roaming individuals. Males with established home ranges also had larger femoral pores relative to body size than roaming males. Home range areas were small in comparison to those of other iguana species, and we speculate that the extreme population density impacts considerably on the spatial ecology of this population. There was extensive home range overlap within and between sexes. Intersexual overlap was greater than intrasexual overlap for both sexes, and continuing male-female pairings were observed among residents. Our results suggest that the extreme population density necessitates extensive home range overlap even though the underlying predictors of territoriality, such as male biased sexual size dimorphism and high aggression levels, remain. Our findings should be factored in to conservation management efforts for this species, particularly in captive breeding and translocation programs.

  12. Genetic, household and spatial clustering of leprosy on an island in Indonesia: a population-based study

    Directory of Open Access Journals (Sweden)

    Oskam Linda

    2005-11-01

    Full Text Available Abstract Background It is generally accepted that genetic factors play a role in susceptibility to both leprosy per se and leprosy type, but only few studies have tempted to quantify this. Estimating the contribution of genetic factors to clustering of leprosy within families is difficult since these persons often share the same environment. The first aim of this study was to test which correlation structure (genetic, household or spatial gives the best explanation for the distribution of leprosy patients and seropositive persons and second to quantify the role of genetic factors in the occurrence of leprosy and seropositivity. Methods The three correlation structures were proposed for population data (n = 560, collected on a geographically isolated island highly endemic for leprosy, to explain the distribution of leprosy per se, leprosy type and persons harbouring Mycobacterium leprae-specific antibodies. Heritability estimates and risk ratios for siblings were calculated to quantify the genetic effect. Leprosy was clinically diagnosed and specific anti-M. leprae antibodies were measured using ELISA. Results For leprosy per se in the total population the genetic correlation structure fitted best. In the population with relative stable household status (persons under 21 years and above 39 years all structures were significant. For multibacillary leprosy (MB genetic factors seemed more important than for paucibacillary leprosy. Seropositivity could be explained best by the spatial model, but the genetic model was also significant. Heritability was 57% for leprosy per se and 31% for seropositivity. Conclusion Genetic factors seem to play an important role in the clustering of patients with a more advanced form of leprosy, and they could explain more than half of the total phenotypic variance.

  13. Feral pig populations are structured at fine spatial scales in tropical Queensland, Australia.

    Directory of Open Access Journals (Sweden)

    Jobina Lopez

    Full Text Available Feral pigs occur throughout tropical far north Queensland, Australia and are a significant threat to biodiversity and World Heritage values, agriculture and are a vector of infectious diseases. One of the constraints on long-lasting, local eradication of feral pigs is the process of reinvasion into recently controlled areas. This study examined the population genetic structure of feral pigs in far north Queensland to identify the extent of movement and the scale at which demographically independent management units exist. Genetic analysis of 328 feral pigs from the Innisfail to Tully region of tropical Queensland was undertaken. Seven microsatellite loci were screened and Bayesian clustering methods used to infer population clusters. Sequence variation at the mitochondrial DNA control region was examined to identify pig breed. Significant population structure was identified in the study area at a scale of 25 to 35 km, corresponding to three demographically independent management units (MUs. Distinct natural or anthropogenic barriers were not found, but environmental features such as topography and land use appear to influence patterns of gene flow. Despite the strong, overall pattern of structure, some feral pigs clearly exhibited ancestry from a MU outside of that from which they were sampled indicating isolated long distance dispersal or translocation events. Furthermore, our results suggest that gene flow is restricted among pigs of domestic Asian and European origin and non-random mating influences management unit boundaries. We conclude that the three MUs identified in this study should be considered as operational units for feral pig control in far north Queensland. Within a MU, coordinated and simultaneous control is required across farms, rainforest areas and National Park Estates to prevent recolonisation from adjacent localities.

  14. Spatial relationships between tropical cyclone frequencies and population densities in Haiti since the 19th century

    Science.gov (United States)

    Klose, C. D.

    2011-12-01

    The second edition of the United Nations Global Assessment Report on Disaster Risk Reduction in 2011 outlined that the worldwide physical exposure to tropical cyclones increased by 192 per cent between 1970 and 2010. For the past 160 years, the Republic of Haiti has experienced numerous tropical storms and hurricanes which may have directly effected the country's development path. However, statistical data regarding storm frequencies and population densities in space and time show that the population's exposure in Haiti may have more negatively influenced its development than the actual number of storms and hurricanes. Haitians, in particular, those living in urban areas have been exposed to much higher tropical cyclone hazards than rural areas since the second half of the 20th century. Specifically, more storms made landfall in regions of accelerated migration/urbanization, such as, in departments Ouest, Artibonite, Nord, and Nord-Ouest with Haiti's four largest cities Port-au-Prince, Gonaives, Cap-Haitien and Port-de-Paix.

  15. Spatially Resolved Colors and Stellar Population Properties in Early-Type Galaxies at z ~ 1.5

    CERN Document Server

    Gargiulo, A; Longhetti, M; La Barbera, F; Tamburri, S

    2012-01-01

    We present F850LP-F160W color gradients for 11 early-type galaxies (ETGs) at 1.0R_e we have found that the fraction of high-z ETGs with negative F850LP-F160W color gradients rises up to 100%. For each galaxy, we investigate the origin of the radial color variation with a technique based on the matching of both the spatially resolved color and the global spectral energy distribution (SED) to predictions of composite stellar population models. In fact, we find that the age of the stellar populations is the only parameter whose radial variation alone can fully account for the observed color gradients and global SEDs for half of the galaxies in our sample (6 ETGs), without the need of radial variation of any other stellar population property. For four out of these six ETGs, a pure metallicity variation can also reproduce the detected color gradients. Nonetheless, a minor contribution to the observed color gradients from radial variation of star-formation time scale, abundance of low-to-high mass stars and dust ca...

  16. Population Growth and Its Spatial Distribution as Factors in the Deforestation of Nang Rong, Thailand.

    Science.gov (United States)

    Entwisle, Barbara; Rindfuss, Ronald R; Walsh, Stephen J; Page, Philip H

    2008-03-01

    Frontiers constitute a major source of global land cover change hot spots, with forests and grass lands being converted into agricultural uses. As such, frontiers provide an opportunity to see how people manipulate the land and their lives in the context of social, cultural and environmental constraints. This paper examines frontier settlement and land cover change in Nang Rong district, Northeast Thailand for the last half century. It uses a Cellular Automata (CA) model to explore the land cover consequences of alternative patterns of settlement in a setting where people establish dwelling units in nucleated villages and work agricultural plots that surround villages. Forested land around the center of a village is converted into agricultural uses in an inverse relationship to the distance from the village center, but frequently modified by biophysical conditions. Land at the center of the village may be reforested after the village is established as a source of shade as well as fruit and other products. Model variation in land cover change is more sensitive to the spatial reach of village households than their temporal reach, suggesting the important role that technology plays in how villagers travel to their fields (walking versus motorized transit).

  17. Spatial-temporal distribution of a Noctiluca scintillans population and its adaption to environmental conditions in northern South China Sea

    Directory of Open Access Journals (Sweden)

    Yu Wang

    2012-11-01

    Full Text Available Based on the data of a Noctiluca scintillans population in northern South China Sea (107°00′–119°00′E, 16°00′–24°00′N obtained in project “Integrated Investigation and Assessment of China Seas”(coded as 908 project in 2006 and 2008, we described the spatial distribution in wide geographical areas and seasonal variations of a Noctiluca scintillans population using GIS spatial analysis modeling and mapping techniques. The adaption of Noctiluca scintillans to temperature, salinity and nutrients were also discussed. The results showed that abundance of Noctiluca scintillans varied from 0.001×104 cells/m3 to 64.5×104 cells/m3, with an average of (0.56±3.29×104 cells/m3(n = 1,424. Average abundance varied by season, spring > autumn > winter > summer, with highest and lowest abundances of (1.28±4.24×104 cells/m3 (n = 356 and (0.19±0.95×104 cells/m3 (n = 356, respectively. The spatial distribution of Noctiluca scintillans generally decreased from alongshore to offshore areas, in a pattern of discontinuous patches. Abundance assemblage zones laid along the shores of eastern Leizhou peninsula, where it was also the peak abundance region in winter. The zones of low annunal abundance were primarily in the northern South China Sea. Dapeng Bay in eastern Guangdong Province and Pearl River Estuary were not abundance assemblage zones during summer and winter months. We found the shore of southeastern Hainan Island became high abundance zones during summer months. Compared with data of national integrated investigations completed in 1958 and 1959, Noctiluca scintillans abundance increased abruptly with an evident change of abundance assemblage zones. The seasonal variation was obvious. Average Noctiluca scintillans abundance was 27 times higher than recorded in 1959. Noctiluca scintillans populations in South China Sea required a much higher temperature than it did in East, Yellow and Bohai Seas in China. Salinity fluctuations were

  18. Avian gene trees, landscape evolution, and geology: towards a modern synthesis of Amazonian historical biogeography?

    OpenAIRE

    Aleixo, Alexandre Luis Padovan; Rossetti, Dilce de Fátima

    2007-01-01

    Recent studies have improved our understanding of Amazonian geological history during the late Tertiary and Quaternary, two periods regarded as critical for the recent diversification of the Amazonian avifauna. The notion that geologically older and more stable areas of Amazonia (such as the Brazilian and Guianan shields) functioned as ‘‘species-pumps’’, whereas geologically more dynamic areas (such as the western Amazonian lowlands) mostly ‘‘captured’’ part of the div...

  19. The spatial genetic differentiation of the legume pod borer, Maruca vitrata F. (Lepidoptera: Crambidae) populations in West Africa.

    Science.gov (United States)

    Agunbiade, T A; Coates, B S; Kim, K S; Forgacs, D; Margam, V M; Murdock, L L; Ba, M N; Binso-Dabire, C L; Baoua, I; Ishiyaku, M F; Tamò, M; Pittendrigh, B R

    2012-10-01

    The legume pod borer, Maruca vitrata, is an endemic insect pest that causes significant yield loss to the cowpea crop in West Africa. The application of population genetic tools is important in the management of insect pests but such data on M. vitrata is lacking. We applied a set of six microsatellite markers to assess the population structure of M. vitrata collected at five sites from Burkina Faso, Niger and Nigeria. Observed polymorphisms ranged from one (marker 3393) to eight (marker 32008) alleles per locus. Observed and expected heterozygosities ranged from 0.0 to 0.8 and 0.0 to 0.6, respectively. Three of the loci in samples from Nigeria and Burkina Faso deviated significantly from Hardy-Weinberg Equilibrium (HWE), whereas no loci deviated significantly in samples from Niger. Analysis of molecular variance (AMOVA) indicated that 67.3% level of the genetic variation was within individuals compared to 17.3% among populations. A global estimate of F ST=0.1 (ENA corrected F ST=0.1) was significant (P⩽0.05) and corroborated by pairwise F ST values that were significant among all possible comparisons. A significant correlation was predicted between genetic divergence and geographic distance between subpopulations (R2=0.6, P=0.04), and cluster analysis by the program STRUCTURE predicted that co-ancestry of genotypes were indicative of three distinct populations. The spatial genetic variance among M. vitrata in West Africa may be due to limited gene flow, south-north seasonal movement pattern or other reproductive barriers. This information is important for the cultural, chemical and biological control strategies for managing M. vitrata.

  20. The spatial genetic differentiation of the legume pod borer, Maruca vitrata F. (Lepidoptera: Crambidae) populations in West Africa

    KAUST Repository

    Agunbiade, Tolulope A.

    2012-04-17

    The legume pod borer, Maruca vitrata, is an endemic insect pest that causes significant yield loss to the cowpea crop in West Africa. The application of population genetic tools is important in the management of insect pests but such data on M. vitrata is lacking. We applied a set of six microsatellite markers to assess the population structure of M. vitrata collected at five sites from Burkina Faso, Niger and Nigeria. Observed polymorphisms ranged from one (marker 3393) to eight (marker 32008) alleles per locus. Observed and expected heterozygosities ranged from 0.0 to 0.8 and 0.0 to 0.6, respectively. Three of the loci in samples from Nigeria and Burkina Faso deviated significantly from Hardy-Weinberg Equilibrium (HWE), whereas no loci deviated significantly in samples from Niger. Analysis of molecular variance (AMOVA) indicated that 67.3% level of the genetic variation was within individuals compared to 17.3% among populations. A global estimate of F ST=0.1 (ENA corrected F ST=0.1) was significant (Pa=0.05) and corroborated by pairwise F ST values that were significant among all possible comparisons. A significant correlation was predicted between genetic divergence and geographic distance between subpopulations (R2=0.6, P=0.04), and cluster analysis by the program STRUCTURE predicted that co-ancestry of genotypes were indicative of three distinct populations. The spatial genetic variance among M. vitrata in West Africa may be due to limited gene flow, south-north seasonal movement pattern or other reproductive barriers. This information is important for the cultural, chemical and biological control strategies for managing M. vitrata. Copyright © 2012 Cambridge University Press.

  1. Accounting for regional background and population size in the detection of spatial clusters and outliers using geostatistical filtering and spatial neutral models: the case of lung cancer in Long Island, New York

    Directory of Open Access Journals (Sweden)

    Goovaerts Pierre

    2004-07-01

    Full Text Available Abstract Background Complete Spatial Randomness (CSR is the null hypothesis employed by many statistical tests for spatial pattern, such as local cluster or boundary analysis. CSR is however not a relevant null hypothesis for highly complex and organized systems such as those encountered in the environmental and health sciences in which underlying spatial pattern is present. This paper presents a geostatistical approach to filter the noise caused by spatially varying population size and to generate spatially correlated neutral models that account for regional background obtained by geostatistical smoothing of observed mortality rates. These neutral models were used in conjunction with the local Moran statistics to identify spatial clusters and outliers in the geographical distribution of male and female lung cancer in Nassau, Queens, and Suffolk counties, New York, USA. Results We developed a typology of neutral models that progressively relaxes the assumptions of null hypotheses, allowing for the presence of spatial autocorrelation, non-uniform risk, and incorporation of spatially heterogeneous population sizes. Incorporation of spatial autocorrelation led to fewer significant ZIP codes than found in previous studies, confirming earlier claims that CSR can lead to over-identification of the number of significant spatial clusters or outliers. Accounting for population size through geostatistical filtering increased the size of clusters while removing most of the spatial outliers. Integration of regional background into the neutral models yielded substantially different spatial clusters and outliers, leading to the identification of ZIP codes where SMR values significantly depart from their regional background. Conclusion The approach presented in this paper enables researchers to assess geographic relationships using appropriate null hypotheses that account for the background variation extant in real-world systems. In particular, this new

  2. Tetrodotoxin Concentrations in Pleurobranchaea maculata: Temporal, Spatial and Individual Variability from New Zealand Populations

    Directory of Open Access Journals (Sweden)

    Stephen Craig Cary

    2012-01-01

    Full Text Available Tetrodotoxin (TTX is a potent neurotoxin that has been identified in a range of phylogenetically unrelated marine and terrestrial organisms. Tetrodotoxin was recently detected in New Zealand in Pleurobranchaea maculata (the grey side-gilled sea slug. From June 2010 to June 2011 wild specimens were collected from 10 locations around New Zealand. At one site (Narrow Neck Beach, Auckland up to 10 individuals were collected monthly for 6 months. Attempts were also made to rear P. maculata in captivity. Tetrodotoxin was detected in samples from eight of the ten sites. The highest average (368.7 mg kg−1 and maximum (1414.0 mg kg−1 concentrations were measured in samples from Illiomama Rock (Auckland. Of the toxic populations tested there was significant variability in TTX concentrations among individuals, with the highest difference (62 fold measured at Illiomama Rock. Tetrodotoxin concentrations in samples from Narrow Neck Beach varied temporally, ranging from an average of 184 mg kg−1 in June 2010 to 17.5 mg kg−1 by December 2010. There was no correlation between TTX levels and mass. The highest levels correspond with the egg laying season (June–August and this, in concert with the detection of high levels of TTX in eggs and early larval stages, suggests that TTX may have a defensive function in P. maculata. Only one larva was successfully reared to full maturation and no TTX was detected.

  3. Spatially Correlated Cluster Populations in the Outer Disk of NGC 3184

    CERN Document Server

    Herbert-Fort, S; Moustakas, J; Christlein, D; Wilcots, E; Baruffolo, A; DiPaola, A; Fontana, A; Giallongo, E; Pogge, R W; Ragazzoni, R; Smareglia, R

    2009-01-01

    We use deep (~27.5 mag V-band point-source limiting magnitude) V- and U-band LBT imaging to study the outer disk (beyond the optical radius R_25) of the non-interacting, face-on spiral galaxy NGC 3184 (D = 11.1 Mpc; R_25 = 11.1 kpc) and find that this outer disk contains >1000 objects (or marginally-resolved 'knots') resembling star clusters with masses ~10^2 - 10^4 M_sun and ages up to ~1 Gyr. We find statistically significant numbers of these cluster-like knots extending to ~1.4 R_25, with the redder knots outnumbering bluer at the largest radii. We measure clustering among knots and find significant correlation to galactocentric radii of 1.5 R_25 for knot separations <1 kpc. The effective integrated surface brightness of this outer disk cluster population ranges from 30 - 32 mag arcsec^-2 in V. We compare the HI extent to that of the correlated knots and find that the clusters extend at least to the damped Lyman-alpha threshold of HI column density (2e20 cm^-2; 1.62 R_25). The blue knots are correlated ...

  4. Mortality due to diseases of the circulatory system among the elderly population in Brazilian Amazon: temporal and spatial analysis

    Directory of Open Access Journals (Sweden)

    Karine Vila Real Nunes

    2013-12-01

    Full Text Available INTRODUCTION: Circulatory Diseases (CD are the major cause of death among the elderly population in Brazilian Amazon. OBJECTIVE: to analyze standardized mortality rates of diseases of the circulatory system (DCS, according to the main causes of death among the elderly, in microregions of the Brazilian Amazon, in the period of 1998 - 2007. METHODS: ecological study of mortality rates distribution standardized by CD and corrected by deaths from poorly defined causes among the elderly (> 65 years of age who lived in Brazilian Amazon in the period of 1998 - 2007. The analysis were carried out by the linear regression, trend, and spatial distribution of Kernel. RESULTS: We verified an increasing trend in mortality by CD (β1 = 28.34 p = 0.01, due to the increasing trend in the States of Maranhão and Tocantins. The central region of Mato Grosso, Northern Tocantins, Eastern Pará and Southwestern Maranhão present hot spots with the highest mortality rates. Males present higher rates when compared to females all over the region; rates of mortality due to acute myocardial infarction and hypertensive disease present the same spatial standard of the CD group and the rates of cerebrovascular diseases present a different spatial distribution standard. Increment in mortality rates according to age was observed: the greater the age, the higher is mortality by CD. CONCLUSION: The Brazilian Amazon presents an increasing trend with high rates of mortality by the circulatory diseases, and the geographic areas with the highest rates are around the Brazilian Amazon, in the states of Tocantins, Maranhão and Mato Grosso.

  5. Spatial analysis of Lobesia botrana (Lepidoptera: Tortricidae) male population in a mediterranean agricultural landscape in central Italy.

    Science.gov (United States)

    Sciarretta, A; Zinni, A; Mazzocchetti, A; Trematerra, P

    2008-04-01

    The results obtained from the spatial analysis of pheromone-baited trap catch data of Lobesia botrana (Denis and Schiffermüller) males are reported. The research was undertaken in the Abruzzo region of central Italy. In the study area, vineyards (of Vitis vinifera L.) are the predominant cultivation, surrounded by hedgerows and small woodlots, and interspersed with cereal crops and olive groves. The main purpose of the study was to investigate the spatio-temporal dynamics of L. botrana, inside and outside vineyards, and to evaluate the effect of the landscape elements on pest distribution. A trend orientation over the experimental area was observed along the direction from northwest to southeast. Correlograms fitted using a spherical model showed in all cases an aggregated distribution and an estimated range having a mean of 174 m in 2005 and 116 m in 2006. Contour maps highlighted that spatial distribution of L. botrana was not limited to vineyards, but its presence is high particularly inside olive groves. The adult distribution on the experimental area changed during the season: hot spots of flight I were positioned inside olive groves; during flights II and III, they were concentrated in vineyards. L. botrana males were also captured in uncultivated fields, but never in high densities. Our results showed that a large proportion of the adult population of L. botrana inhabits areas outside those usually targeted by pest management programs. Thus, in Mediterranean agro-ecosystems, it is highly recommended to consider the whole landscape, with particular attention to olive crops.

  6. The VISTA Carina Nebula Survey II. Spatial distribution of the infrared-excess-selected young stellar population

    CERN Document Server

    Zeidler, Peter; Ratzka, Thorsten; Roccatagliata, Veronica; Petr-Gotzens, Monika G

    2016-01-01

    We performed a deep wide-field (6.76 deg^2) near-infrared survey with the VISTA telescope that covers the entire extent of the Carina nebula complex (CNC). The point-source catalog created from these data contains around four million individual objects down to masses of 0.1 M_sun. We present a statistical study of the large-scale spatial distribution and an investigation of the clustering properties of infrared-excesses objects, which are used to trace disk-bearing young stellar objects (YSOs). We find that a (J - H) versus (Ks - [4.5]) color-color diagram is well suited to tracing the population of YSO-candidates (cYSOs) by their infrared excess. We identify 8781 sources with strong infrared excess, which we consider as cYSOs. This sample is used to investigate the spatial distribution of the cYSOs with a nearest-neighbor analysis. The surface density distribution of cYSOs agrees well with the shape of the clouds as seen in our Herschel far-infrared survey. The strong decline in the surface density of excess...

  7. Prevalence and spatial distribution of intestinal parasitic infections in a rural Amazonian settlement, Acre State, Brazil Prevalência e distribuição espacial de parasitoses intestinais em assentamento agrícola na Amazônia rural, Acre, Brasil

    Directory of Open Access Journals (Sweden)

    Estéfano Alves de Souza

    2007-02-01

    Full Text Available A population-based survey of the prevalence and spatial distribution of intestinal parasitism was carried out in an agricultural settlement in the Amazon Basin of Brazil (Granada, Acre State. More than half (53.4% of the 429 stool specimens from subjects in all age groups, living in 113 households, had cysts, ova, or larvae of intestinal parasites. The most prevalent parasites were Giardia duodenalis (19.6% and soil-transmitted helminths (12.7%; 105 (24.5% subjects were infected with more than one species of parasite. Significant age-related differences in prevalence were only found for G. duodenalis (children 30 years were less affected. Six households (5.3%, situated within a radius of 690m, comprised 48.1% of all subjects harboring soil-transmitted helminths in our study area. Households within this cluster were poorer and more crowded than those outside the cluster. The observed spatial clustering of infections with soil-transmitted helminths provides valuable information for the spatial targeting of sanitary interventions in this area.Estudo de base populacional sobre a prevalência e distribuição de parasitoses intestinais foi realizado em assentamento agrícola na Amazônia Brasileira (Granada, Acre. Mais da metade (53,4% das 429 amostras analisadas de indivíduos de todas as idades, moradores de 113 domicílios, continha cistos, ovos ou larvas de parasitas intestinais. Os parasitas intestinais de maior prevalência foram Giardia duodenalis (19,6% e os geo-helmintos (12,7%; 105 (24,5% indivíduos apresentavam co-infecção por mais de uma espécie de parasita. Houve diferença significativa em relação à idade na prevalência somente de G. duodenalis (crianças 30 anos foram menos afetados. Seis domicílios (5,3%, localizados num raio de 690m, concentraram 48,1% de todos os indivíduos infectados por geo-helmintos na área de estudo. Domicílios incluídos nesse agregado (cluster eram mais pobres e com maior número de habitantes do

  8. The association of genetic markers and malaria infection in the Brazilian Western Amazonian region

    Directory of Open Access Journals (Sweden)

    B Beiguelman

    2003-06-01

    Full Text Available Almost all individuals (182 belonging to an Amazonian riverine population (Portuchuelo, RO, Brazil were investigated for ascertaining data on epidemiological aspects of malaria. Thirteen genetic blood polymorphisms were investigated (ABO, MNSs, Rh, Kell, and Duffy systems, haptoglobins, hemoglobins, and the enzymes glucose-6-phosphate dehydrogenase, glyoxalase, phosphoglucomutase, carbonic anhydrase, red cell acid phosphatase, and esterase D. The results indicated that the Duffy system is associated with susceptibility to malaria, as observed in other endemic areas. Moreover, suggestions also arose indicating that the EsD and Rh loci may be significantly associated with resistance to malaria. If statistical type II errors and sample stratification could be ruled out, hypotheses on the existence of a causal mechanism or an unknown closely linked locus involved in susceptibility to malaria infection may explain the present findings.

  9. Spatial correlations of population and ecological factors with distribution of visceral leishmaniasis cases in southwestern Iran

    Directory of Open Access Journals (Sweden)

    Mohammad Amin Ghatee

    2013-08-01

    Full Text Available Background & objectives: Leishmaniasis as a dynamic disease may be markedly influenced by demographic and ecological factors. A geospatial information system study was developed to determine the distribution of visceral leishmaniasis (VL cases in relation to population, climatic and environmental factors in Fars province, southwest of Iran. Methods: The dwelling addresses of 217 VL patients were obtained from hospital files. A hazard map produced by unifying buffers (5 km around nomads travel routes (NTR was developed to survey the effect of close proximity to NTR on the distribution of VL. Mean annual rainfall (MAR, mean annual temperature (MAT, four months temperature mean (T4, elevation, slope and landcover were climatic and environmental factors that have been analysed. Finally, data of dwelling foci were extracted from maps and analysed using logistic regression models. Results: Close proximity to NTR was the most important factor influenced on the disease distribution. Climatic factors were in second rank. Among them, temperature especially T4 is the most effective variable and rainfall was also shown to be another effective climatic agent. Most cases of VL were reported from temperate and semiarid areas in western and central regions while arid condition was a confined factor. The environmental factor of landcovers including urban, dry farm and thin forest regions was revealed as the third rank effective factor. Altitude importance was only shown when its effect was studied independently from other factors. Interpretation & conclusion: These findings present the distribution of VL in Fars province is influenced by combination of ecological and nomads demographical variables although closeness to NTR and nomads role in distribution and continuance of kala-azar are the most important factors.

  10. Spatial and stage-structured population model of the American crocodile for comparison of comprehensive Everglades Restoration Plan (CERP) alternatives

    Science.gov (United States)

    Green, Timothy W.; Slone, Daniel H.; Swain, Eric D.; Cherkiss, Michael S.; Lohmann, Melinda; Mazzotti, Frank J.; Rice, Kenneth G.

    2010-01-01

    As part of the U.S. Geological Survey Priority Ecosystems Science (PES) initiative to provide the ecological science required during Everglades restoration, we have integrated current regional hydrologic models with American crocodile (Crocodylus acutus) research and monitoring data to create a model that assesses the potential impact of Comprehensive Everglades Restoration Plan (CERP) efforts on the American crocodile. A list of indicators was created by the Restoration Coordination and Verification (RECOVER) component of CERP to help determine the success of interim restoration goals. The American crocodile was established as an indicator of the ecological condition of mangrove estuaries due to its reliance upon estuarine environments characterized by low salinity and adequate freshwater inflow. To gain a better understanding of the potential impact of CERP restoration efforts on the American crocodile, a spatially explicit crocodile population model has been created that has the ability to simulate the response of crocodiles to various management strategies for the South Florida ecosystem. The crocodile model uses output from the Tides and Inflows in the Mangroves of the Everglades (TIME) model, an application of the Flow and Transport in a Linked Overland/Aquifer Density Dependent System (FTLOADDS) simulator. TIME has the capability to link to the South Florida Water Management Model (SFWMM), which is the primary regional tool used to assess CERP restoration scenarios. A crocodile habitat suitability index and spatial parameter maps that reflect salinity, water depth, habitat, and nesting locations are used as driving functions to construct crocodile finite rate of increase maps under different management scenarios. Local stage-structured models are integrated with a spatial landscape grid to display crocodile movement behavior in response to changing environmental conditions. Restoration efforts are expected to affect salinity levels throughout the habitat of

  11. Millennial-scale dynamics of southern Amazonian rain forests.

    Science.gov (United States)

    Mayle, F E; Burbridge, R; Killeen, T J

    2000-12-22

    Amazonian rain forest-savanna boundaries are highly sensitive to climatic change and may also play an important role in rain forest speciation. However, their dynamics over millennial time scales are poorly understood. Here, we present late Quaternary pollen records from the southern margin of Amazonia, which show that the humid evergreen rain forests of eastern Bolivia have been expanding southward over the past 3000 years and that their present-day limit represents the southernmost extent of Amazonian rain forest over at least the past 50,000 years. This rain forest expansion is attributed to increased seasonal latitudinal migration of the Intertropical Convergence Zone, which can in turn be explained by Milankovitch astronomic forcing.

  12. The VISTA Carina Nebula Survey. II. Spatial distribution of the infrared-excess-selected young stellar population

    Science.gov (United States)

    Zeidler, P.; Preibisch, T.; Ratzka, T.; Roccatagliata, V.; Petr-Gotzens, M. G.

    2016-01-01

    We performed a deep wide-field (6.76 sq. deg) near-infrared survey with the VISTA telescope that covers the entire extent of the Carina nebula complex (CNC). The point-source catalog created from these data contains around four million individual objects down to masses of 0.1 M⊙. We present a statistical study of the large-scale spatial distribution and an investigation of the clustering properties of infrared-excesses objects, which are used to trace disk-bearing young stellar objects (YSOs). A selection based on a near-infrared (J-H) versus (H-Ks) color-color diagram shows an almost uniform distribution over the entire observed area. We interpret this as a result of the very high degree of background contamination that arises from the Carina Nebula's location close to the Galactic plane. Complementing the VISTA near-infrared catalog with Spitzer IRAC mid-infrared photometry improves the situation of the background contamination considerably. We find that a (J-H) versus (Ks- [4.5]) color-color diagram is well suited to tracing the population of YSO-candidates (cYSOs) by their infrared excess. We identify 8781 sources with strong infrared excess, which we consider as cYSOs. This sample is used to investigate the spatial distribution of the cYSOs with a nearest-neighbor analysis. The surface density distribution of cYSOs agrees well with the shape of the clouds as seen in our Herschel far-infrared survey. The strong decline in the surface density of excess sources outside the area of the clouds supports the hypothesis that our excess-selected sample consists predominantly of cYSOs with a low level of background contamination. This analysis allows us to identify 14 groups of cYSOs outside the central area.Our results suggest that the total population of cYSOs in the CNC comprises about 164 000 objects, with a substantial fraction (~35%) located in the northern, still not well studied parts. Our cluster analysis suggests that roughly half of the cYSOs constitute a

  13. Human health risk assessment with spatial analysis: Study of a population chronically exposed to arsenic through drinking water from Argentina

    Energy Technology Data Exchange (ETDEWEB)

    Navoni, J.A., E-mail: jnavoni@ffyb.uba.ar [Cátedra de Toxicología y Química Legal, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, C1113AAD Ciudad Autónoma de Buenos Aires (Argentina); De Pietri, D., E-mail: depietrid@hotmail.com [Dirección Nacional de Determinantes de la Salud e Investigación, Ministerio de Salud de la Nación, Av. 9 de Julio 1925, C1073ABA Ciudad Autónoma de Buenos Aires (Argentina); Olmos, V. [Cátedra de Toxicología y Química Legal, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, C1113AAD Ciudad Autónoma de Buenos Aires (Argentina); Gimenez, C. [Cátedra Química Analítica I, Universidad Nacional del Chaco Austral. Cmte., Fernández 755 (3700), Pres. Roque Sáenz Peña, Chaco (Argentina); Bovi Mitre, G. [Grupo INQA (Investigación Química Aplicada) Facultad de Ciencias Agrarias, Universidad Nacional de Jujuy, Alberdi 47, piso 1, San Salvador de Jujuy, Jujuy CP 4600 (Argentina); and others

    2014-11-15

    Arsenic (As) is a ubiquitous element widely distributed in the environment. This metalloid has proven carcinogenic action in man. The aim of this work was to assess the health risk related to As exposure through drinking water in an Argentinean population, applying spatial analytical techniques in addition to conventional approaches. The study involved 650 inhabitants from Chaco and Santiago del Estero provinces. Arsenic in drinking water (Asw) and urine (UAs) was measured by hydride generation atomic absorption spectrophotometry. Average daily dose (ADD), hazard quotient (HQ), and carcinogenic risk (CR) were estimated, geo-referenced and integrated with demographical data by a health composite index (HI) applying geographic information system (GIS) analysis. Asw covered a wide range of concentration: from non-detectable (ND) to 2000 μg/L. More than 90% of the population was exposed to As, with UAs levels above the intervention level of 100 μg/g creatinine. GIS analysis described an expected level of exposure lower than the observed, indicating possible additional source/s of exposure to inorganic arsenic. In 68% of the locations, the population had a HQ greater than 1, and the CR ranged between 5·10{sup −5} and 2,1·10{sup −2}. An environmental exposure area through ADD geo-referencing defined a baseline scenario for space-time risk assessment. The time of residence, the demographic density and the potential health considered outcomes helped characterize the health risk in the region. The geospatial analysis contributed to delimitate and analyze the change tendencies of risk in the region, broadening the scopes of the results for a decision-making process. - Highlights: • Risk assessment (RA) to As using deterministic procedures • Integration of RA through deterministic procedures with GIS tools • Analysis of the time-space behavior of the risk area • Analysis of As effect outcomes through HI • Broaden the scopes of deterministic approaches.

  14. Do species traits determine patterns of wood production in Amazonian forests?

    Directory of Open Access Journals (Sweden)

    T. R. Baker

    2009-02-01

    Full Text Available Understanding the relationships between plant traits and ecosystem properties at large spatial scales is important for predicting how compositional change will affect carbon cycling in tropical forests. In this study, we examine the relationships between species wood density, maximum height and above-ground, coarse wood production of trees ≥10 cm diameter (CWP for 60 Amazonian forest plots. Average species maximum height and wood density are lower in Western than Eastern Amazonia and are negatively correlated with CWP. To test the hypothesis that variation in these traits causes the variation in CWP, we generate plot-level estimates of CWP by resampling the full distribution of tree biomass growth rates whilst maintaining the appropriate tree-diameter and functional-trait distributions for each plot. These estimates are then compared with the observed values. Overall, the estimates do not predict the observed, regional-scale pattern of CWP, suggesting that the variation in community-level trait values does not determine variation in coarse wood productivity in Amazonian forests. Instead, the regional gradient in CWP is caused by higher biomass growth rates across all tree types in Western Amazonia. Therefore, the regional gradient in CWP is driven primarily by environmental factors, rather than the particular functional composition of each stand. These results contrast with previous findings for forest biomass, where variation in wood density, associated with variation in species composition, is an important driver of regional-scale patterns in above-ground biomass. Therefore, in tropical forests, above-ground wood productivity may be less sensitive than biomass to compositional change that alters community-level averages of these plant traits.

  15. Do species traits determine patterns of wood production in Amazonian forests?

    Directory of Open Access Journals (Sweden)

    T. R. Baker

    2008-09-01

    Full Text Available Understanding the relationships between plant traits and ecosystem properties at large spatial scales is important for predicting how compositional change will affect carbon cycling in tropical forests. Here, we examine the relationships between species wood density, maximum height and wood production for 60 Amazonian forest plots. Firstly, we examine how community-level species traits vary across Amazonia. Average species maximum height and wood density are low in western, compared to eastern, Amazonia and are negatively correlated with aboveground wood productivity and soil fertility. Secondly, we compare biomass growth rates across functional groups defined on the basis of these two traits. In similar size classes, biomass growth rates vary little between trees that differ in wood density and maximum height. However, biomass growth rates are generally higher in western Amazonia across all functional groups. Thirdly, we ask whether the data on the abundance and average biomass growth rates of different functional groups is sufficient to predict the observed, regional-scale pattern of wood productivity. We find that the lower rate of wood production in eastern compared to western Amazonia cannot be estimated on the basis of this information. Overall, these results suggest that the correlations between community-level trait values and wood productivity in Amazonian forests are not causative: direct environmental control of biomass growth rates appears to be the most important driver of wood production at regional scales. This result contrasts with findings for forest biomass where variation in wood density, associated with variation in species composition, is an important driver of regional-scale patterns. Tropical forest wood productivity may therefore be less sensitive than biomass to compositional change that alters community-level averages of these plant traits.

  16. Karyomegaly in Baryancistrus sp. (Loricaridae) from Amazonian Brazil.

    Science.gov (United States)

    Paperna, I; Di Cave, D

    2001-06-20

    Vesicular karyomegaly of the liver hepatocytes is described from Baryancistrus sp. (Loricaridae), in 3 out of 7 fish, collected from Rio Xingu in central Amazonian (neutral water) Brazil and kept about 2 wk in a holding facility fed with acid water (pH 5.0 to 5.5). Altered cells also occurred in the gill epithelium. The vesicles in the liver were shown to contain a periodic acid-Schiff (PAS)-positive substance or residue.

  17. Plant reproduction in the Central Amazonian floodplains : challenges and adaptations

    OpenAIRE

    Ferreira, Cristiane da Silva; Fernandez Piedade, Maria Teresa; Wittmann, Astrid de Oliveira; Franco, Augusto César

    2010-01-01

    Background The Central Amazonian floodplain forests are subjected to extended periods of flooding and to flooding amplitudes of 10 m or more. The predictability, the length of the flood pulse, the abrupt transition in the environmental conditions along topographic gradients on the banks of major rivers in Central Amazonia, and the powerful water and sediment dynamics impose a strong selective pressure on plant reproduction systems. Scope In this review, we examine how the hydrological cycle i...

  18. Spatial structure of rodent populations and infection patterns of hantavirus in seven villages of Shandong Province from February 2006 to January 2007

    Institute of Scientific and Technical Information of China (English)

    SUN Lin; SHAO Qi; WANG Zhi-qiang; KANG Dian-min; LI Shi-wei; LI Xue-gang; XUE Fu-zhong; WANG Jie-zhen

    2011-01-01

    Background Hemorrhagic fever with renal syndrome (HFRS) is endemic in Junan county, Shandong Province, China.We conducted geographic information system (GlS)-based spatial analysis with the objective of estimating the spatial distribution of rodent populations and their hantavirus infection patterns, to describe the spatial relationships of hantavirus strains in small ecological areas and to identify key areas in endemic areas of HFRS for future public health planning and resource allocation.Methods Rodent sampling was conducted in seven villages in Junan county from February 2006 to January 2007 using field epidemiological surveillance. Dynamics of hantavirus infection and population densities in rodents were investigated. Spatial statistical techniques including Ripley' L index and nearest neighbour hierarchical (NNH) clustering analysis were conducted to reveal the spatial structure of rodent populations in seven villages. Phylogenetic analysis and two-dimensional minimal spanning tree (2-D MST) models were employed to describe the spatial relationship of hantavirus strains.Results Data showed that Mus musculus was the most common species in our study area, followed by Rattus norvegicus. Ripley's L index and NNH analysis showed that the spatial distribution of all captured rodents, Mus musculus and Rattus norvegicus in seven villages were clustered and there were hotspot areas of rodent distribution. The branches of 2-D MSTs had similar topologies to those of corresponding phylogenetic trees, and hantavirus strains exhibited obvious connective traces in seven villages.Conclusions These results contribute to the understanding of the spatial distribution of rodent populations and hantavirus infection patterns in small areas, and identify priority areas within the epidemic areas for the development of a better prevention strategy against hemorrhagic fever with renal syndrome in a small ecological area.

  19. Food Plants Eaten by Amazonian Manatees (Trichechus inunguis, Mammalia : Sirenia

    Directory of Open Access Journals (Sweden)

    Colares Ioni G.

    2002-01-01

    Full Text Available To determine the feeding habits of the Amazonian manatee Trichechus inunguis in some Central Amazonian rivers and lakes, we compared plant epidermis found in the stomach contents and/or faeces of animals with a reference collection of plants present in the studied areas. Twenty five samples from digestive tracts of animals found dead and 25 faeces samples found floating were analyzed. From these samples, 24 aquatic macrophytes were identified. The Gramineae family was identified in 96% of the samples, Paspalum repens and Echinochloa polystachya being the most abundant in the samples. The second most frequent family was the Pontederiaceae primarily Eichhornia crassipes. During the high water period, the animals showed a more selective diet (eight identified species. In the low water period, when food was more scarce, the animals showed a larger diversity of species in their diet (21 species of plants. Differences in the diet among the two studied areas reflected the physiographics characteristics of the region. Amazonian manatees fed mostly on emergent plants.

  20. Spatial distribution of microbial populations and carbon cycle in the subsurface environment of the Horonobe area, Hokkaido, Japan

    Science.gov (United States)

    Amano, Y.; Ise, K.; Terashima, M.; Sasaki, Y.; Amamiya, H.; Yoshikawa, H.

    2014-12-01

    Microorganisms are widely distributed in the subsurface environments. However, the distribution, role and rate of metabolisms, and the source of their activity are not well known. In this study, we investigated deep groundwater samples from sedimentary rocks, containing saturated methane and CO2, using boreholes at the Horonobe Underground Research Laboratory (URL), northern Hokkaido, Japan. The hydrochemical conditions of groundwaters, such as in-situ water pressure, temperature, electric conductivity, pH, redox potential, were monitored without degassing at multiple intervals along the borehole. Groundwater samples were taken periodically and chemical composition was analyzed using ICP-MS, etc. Cell counts were in the range of 103 to 105 cells ml-1. Molecular analyses revealed the spatial distribution and heterogeneity of the microbial population. Abundant methanogens were detected in the groundwater, and 80% of them were related to either Methanoregula boonei or Methanobacterium flexile that can utilize H2/CO2 by methanogenesis. Phylotypes clustered within the phylum Firmicutes, beta-Proteobacteria, delta-Proteobacteria and candidate division TM7 were dominant in the groundwater samples. Laboratory experiments using a culture technique showed that humic substances purified from the groundwater at Horonobe area appear to be degraded by microorganisms. Our results suggest that microbial spatial distributions in the subsurface environment were correlated closely with geochemical conditions, such as redox condition and carbon sources. In addition, it is inferred that humic substances are one of the important carbon sources for the subsurface microbial redox processes in the environment. This study was partly funded by the Ministry of Economy, Trade and Industry of Japan.

  1. Persistent effects of pre-Columbian plant domestication on Amazonian forest composition

    NARCIS (Netherlands)

    Levis, C.; Costa, Flávia R.C.; Bongers, F.; Pena Claros, M.; Braga Junqueira, A.

    2017-01-01

    The extent to which pre-Columbian societies altered Amazonian landscapes is hotly debated. We performed a basin-wide analysis of pre-Columbian impacts on Amazonian forests by overlaying known archaeological sites in Amazonia with the distributions and abundances of 85 woody species domesticated by p

  2. A Molecular Survey of the Diversity of Microbial Communities in Different Amazonian Agricultural Model Systems

    Directory of Open Access Journals (Sweden)

    Acácio A. Navarrete

    2010-05-01

    Full Text Available The processes of land conversion and agricultural intensification are a significant cause of biodiversity loss, with consequent negative effects both on the environment and the sustainability of food production.The anthrosols associated with pre-Colombian settlements in the Amazonian region are examples of how anthropogenic activities may sustain the native populations against harsh tropical environments for human establishment, even without a previous intentionality of anthropic soil formation. In a case study (Model I—“Slash-and-Burn” the community structures detected by automated ribosomal intergenic spacer analysis (ARISA revealed that soil archaeal, bacterial and fungal communities are heterogeneous and each capable of responding differently to environmental characteristics. ARISA data evidenced considerable difference in structure existing between microbial communities in forest and agricultural soils. In a second study (Model II—“Anthropogenic Soil”, the bacterial community structures revealed by terminal restriction fragment length polymorphism (T-RFLP differed among an Amazonian Dark Earth (ADE, black carbon (BC and its adjacent non-anthropogenic oxisoil. The bacterial 16S rRNA gene (OTU richness estimated by pyrosequencing was higher in ADE than BC. The most abundant bacterial phyla in ADE soils and BC were Proteobacteria—24% ADE, 15% BC; Acidobacteria—10% ADE, 21% BC; Actinobacteria—7% ADE, 12% BC; Verrucomicrobia, 8% ADE; 9% BC; Firmicutes—3% ADE, 8% BC. Overall, unclassified bacteria corresponded to 36% ADE, and 26% BC. Regardless of current land uses, our data suggest that soil microbial community structures may be strongly influenced by the historical soil management and that anthrosols in Amazonia, of anthropogenic origins, in addition to their capacity of enhancing crop yields, may also improve microbial diversity, with the support of the black carbon, which may sustain a particular and unique habitat for the

  3. Spatially Resolved Stellar Populations Of Nearby Post-Starburst Galaxies In SDSS-IV MaNGA

    Science.gov (United States)

    Liu, Charles; Betances, Ashley; Bonilla, Alaina Marie; Gonzalez, Andrea; Migliore, Christina; Goddard, Daniel; Masters, Karen; SDSS-IV MaNGA Team

    2016-01-01

    We have selected five galaxies in the Mapping Nearby Galaxies at APO (MaNGA) project of the latest generation of the Sloan Digital Sky Survey (SDSS-IV) identified as post-starburst (E+A) systems, in the transition between "blue cloud" and "red sequence" galaxies. We measure the equivalent widths of the Balmer series, D4000 break, and metal lines across each galaxy, and produce maps of the stellar age, stellar mass, and metallicities of each galaxy using FIREFLY, a full spectral analysis code. We have found that the measured properties of the galaxies overall generally matches well with single-aperture SDSS spectra from which the original post-starburst identifications were made. The variation in the spatial distributions of the stellar populations, in particular the A-stars, give us insight into the details of the transitional E+A quenching phase. This work was supported by the Alfred P. Sloan Foundation via the SDSS-IV Faculty and Student Team (FAST) initiative, ARC Agreement No. SSP483 to the CUNY College of Staten Island.

  4. The developmental cycle of domestic groups and Amazonian deforestation

    OpenAIRE

    MORAN, EMILIO; McCracken,Stephen

    2004-01-01

    It has been common to attribute tropical deforestation to population growth and/or migration. This paper finds that this is true only at large and aggregated spatial and temporal scales. When one examines regional-scaled processes, there are numberous mediating factors and more complex demographic processes that account for differences in rates of deforestation. Based upon three years of research in the Altamira region, Xingu Basin, Brazilian Amazon, we differenttiate between period and cohor...

  5. Assessing Spatial and Attribute Errors of Input Data in Large National Datasets for use in Population Distribution Models

    Energy Technology Data Exchange (ETDEWEB)

    Patterson, Lauren A [ORNL; Urban, Marie L [ORNL; Myers, Aaron T [ORNL; Bhaduri, Budhendra L [ORNL; Bright, Eddie A [ORNL; Coleman, Phil R [ORNL

    2007-01-01

    Geospatial technologies and digital data have developed and disseminated rapidly in conjunction with increasing computing performance and internet availability. The ability to store and transmit large datasets has encouraged the development of national datasets in geospatial format. National datasets are used by numerous agencies for analysis and modeling purposes because these datasets are standardized, and are considered to be of acceptable accuracy. At Oak Ridge National Laboratory, a national population model incorporating multiple ancillary variables was developed and one of the inputs required is a school database. This paper examines inaccuracies present within two national school datasets, TeleAtlas North America (TANA) and National Center of Education Statistics (NCES). Schools are an important component of the population model, because they serve as locations containing dense clusters of vulnerable populations. It is therefore essential to validate the quality of the school input data, which was made possible by increasing national coverage of high resolution imagery. Schools were also chosen since a 'real-world' representation of K-12 schools for the Philadelphia School District was produced; thereby enabling 'ground-truthing' of the national datasets. Analyses found the national datasets not standardized and incomplete, containing 76 to 90% of existing schools. The temporal accuracy of enrollment values of updating national datasets resulted in 89% inaccuracy to match 2003 data. Spatial rectification was required for 87% of the NCES points, of which 58% of the errors were attributed to the geocoding process. Lastly, it was found that by combining the two national datasets together, the resultant dataset provided a more useful and accurate solution. Acknowledgment Prepared by Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, Tennessee 37831-6285, managed by UT-Battelle, LLC for the U. S. Department of Energy undercontract no

  6. Spatial distribution of Brucella antibodies with reference to indigenous cattle populations among contrasting agro-ecological zones of Uganda.

    Science.gov (United States)

    Kabi, Fredrick; Muwanika, Vincent; Masembe, Charles

    2015-09-01

    Indigenous cattle populations exhibit various degrees of agro-ecological fitness and provide desirable opportunities for investments to improve sustainable production for better rural small-scale farmers' incomes globally. However, they could be a source of infection to their attendants and other susceptible livestock if their brucellosis status remains unknown. This study investigated the spatial distribution of Brucella antibodies among indigenous cattle populations in Uganda. Sera from a total of 925 indigenous cattle (410 Ankole Bos taurus indicus, 50 Nganda and 465 East African Shorthorn Zebu (EASZ) - B. indicus) obtained randomly from 209 herds spread throughout Uganda were sequentially analysed for Brucella antibodies using the indirect (I) and competitive (C) enzyme linked Immuno-sorbent assays (ELISA). Recent incidences of abortion within the previous 12 months and routine hygienic practices during parturition were explored for public health risks. Brucella antibodies occurred in approximately 8.64% (80/925) and 28.70% (95% CI: 22.52, 34.89) of the sampled individual cattle and herds, respectively. Findings have shown that Ankole and EASZ cattle had similar seroprevalences. Indigenous cattle from the different study agro-ecological zones (AEZs) exhibited varying seroprevalences ranging from approximately 1.78% (95% CI: 0, 5.29) to 19.67% (95% CI: 8.99, 30.35) in the Lake Victoria Crescent (LVC) and North Eastern Drylands (NED) respectively. Significantly higher odds for Brucella antibodies occurred in the NED (OR: 3.40, 95% CI: 1.34, 8.57, p=0.01) inhabited by EASZ cattle compared to the KP (reference category) AEZ. Recent incidences of abortions within the previous 12 months were significantly (p<0.001) associated with seropositive herds. These findings add critical evidence to existing information on the widespread occurrence of brucellosis among indigenous cattle populations in Uganda and could guide allocation of meagre resources for awareness creation

  7. Planning a red squirrel conservation area: using a spatially explicit population dynamics model to predict the impact of felling and forest design plans

    NARCIS (Netherlands)

    Lurz, P.W.W.; Geddes, N.; Lloyd, A.J.; Shirley, M.D.E.; Rushton, B.; Burlton, B.

    2003-01-01

    This paper describes the use of a spatially explicit population model (SEPM) to investigate the effects of different forest management strategies on a red squirrel conservation area. The study was based in woodland managed by Forest Enterprise, which manages 75 000 ha of woodlands in Northumberland,

  8. How domain growth is implemented determines the long-term behavior of a cell population through its effect on spatial correlations

    Science.gov (United States)

    Ross, Robert J. H.; Baker, R. E.; Yates, C. A.

    2016-07-01

    Domain growth plays an important role in many biological systems, and so the inclusion of domain growth in models of these biological systems is important to understanding how these systems function. In this work we present methods to include the effects of domain growth on the evolution of spatial correlations in a continuum approximation of a lattice-based model of cell motility and proliferation. We show that, depending on the way in which domain growth is implemented, different steady-state densities are predicted for an agent population. Furthermore, we demonstrate that the way in which domain growth is implemented can result in the evolution of the agent density depending on the size of the domain. Continuum approximations that ignore spatial correlations cannot capture these behaviors, while those that account for spatial correlations do. These results will be of interest to researchers in developmental biology, as they suggest that the nature of domain growth can determine the characteristics of cell populations.

  9. Diurnal cortisol rhythms in Tsimane' Amazonian foragers: new insights into ecological HPA axis research.

    Science.gov (United States)

    Nyberg, Colleen H

    2012-02-01

    Although a growing body of research has documented important pathways by which the HPA axis mediates the interface between the psychosocial world and individual health, there is a paucity of data from nonwestern populations, particularly from those populations with distinct nutritional and infectious disease ecologies. The specific objectives of this study are: (1) to document variation in diurnal cortisol rhythms among the Tsimane', a remote population in the Bolivian Amazon, (2) to explore this variation by age and by gender, and (3) to compare diurnal rhythms from this study to other population based studies of cortisol conducted in industrialized nations. Salivary cortisol samples were collected twice daily, immediately upon waking and before bed, for three consecutive days from 303 participants (age 1.6-82 years, 1564 samples) in conjunction with the Tsimane' Amazonian Panel Study (TAPS). Cortisol rhythms showed strong age effects across the developmental span, with basal levels and slopes increasing into adulthood, although individuals older than 60 years demonstrated a precipitous flattening of the diurnal slope. Cortisol profiles were elevated in adult females compared to their age-matched male counterparts, and diurnal slopes, as well as mean cortisol concentrations among the Tsimane' were the lowest reported in any population based study of HPA axis function. Although the within-population variation in cortisol profiles was consistent with the established correlates of time of day, age, and sex, the between-population comparisons revealed dramatically lower levels of HPA activity among the Tsimane'. This study provides a benchmark against which to reference cortisol levels from industrialized populations, and expands the range of documented variation in HPA axis function in a nonwestern context.

  10. A moving target--incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations.

    Science.gov (United States)

    Cooke, Steven J; Martins, Eduardo G; Struthers, Daniel P; Gutowsky, Lee F G; Power, Michael; Doka, Susan E; Dettmers, John M; Crook, David A; Lucas, Martyn C; Holbrook, Christopher M; Krueger, Charles C

    2016-04-01

    Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

  11. A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

    Science.gov (United States)

    Cooke, Steven J.; Martins, Eduardo G; Struthers, Daniel P; Gutowsky, Lee F G; Powers, Michael H.; Doka, Susan E; Dettmers, John M.; Crook, David A; Lucas, Martyn C.; Holbrook, Christopher; Krueger, Charles C.

    2016-01-01

    Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

  12. Complex patterns of population genetic structure of moose, Alces alces, after recent spatial expansion in Poland revealed by sex-linked markers.

    Science.gov (United States)

    Swisłocka, Magdalena; Czajkowska, Magdalena; Duda, Norbert; Danyłow, Jan; Owadowska-Cornil, Edyta; Ratkiewicz, Mirosław

    2013-01-01

    In recent years, human activity directly and indirectly influenced the demography of moose in Poland. The species was close to extinction, and only a few isolated populations survived after the Second World War; then, unprecedented demographic and spatial expansions had occurred, possibly generating a very complex pattern of population genetic structure at the present-day margins of the species range in Poland. Over 370 moose from seven populations were collected from Poland, and partial sequences of the mitochondrial control region (mtDNA-cr; 607 bp) were obtained. In addition, the entire mtDNA cytochrome b gene (1,140 bp) and Y-chromosome markers (1,982 bp in total) were studied in a chosen set of individuals. Twelve mtDNA haplotypes that all belonged to the European moose phylogroup were recorded. They could be divided into two distinct clades: Central Europe and the Ural Mountains. The first clade consists of three distinct groups/branches: Biebrza, Polesie, and Fennoscandia. The Biebrza group has experienced spatial and demographic expansion in the recent past. Average genetic differentiation among moose populations in Poland at mtDNA-cr was great and significant (ΦST = 0.407, p moose that colonized Poland from the east (Lithuania, Belarus, and Ukraine) and the north (former East Prussia). Among all the sequenced Y-chromosome markers, polymorphisms were found in the DBY14 marker in three populations only; four haplotypes were recorded in total. No significant differentiation was detected for this Y-linked marker among moose populations in Poland. Our mtDNA study revealed that a variety of different factors-bottleneck, the presence of relict, autochthonous populations, translocations, limited female dispersal, and the colonization from the east and north-are responsible for the observed complex pattern of population genetic structure after demographic and spatial expansion of moose in Poland.

  13. Environmental change and the carbon balance of Amazonian forests.

    Science.gov (United States)

    Aragão, Luiz E O C; Poulter, Benjamin; Barlow, Jos B; Anderson, Liana O; Malhi, Yadvinder; Saatchi, Sassan; Phillips, Oliver L; Gloor, Emanuel

    2014-11-01

    Extreme climatic events and land-use change are known to influence strongly the current carbon cycle of Amazonia, and have the potential to cause significant global climate impacts. This review intends to evaluate the effects of both climate and anthropogenic perturbations on the carbon balance of the Brazilian Amazon and to understand how they interact with each other. By analysing the outputs of the Intergovernmental Panel for Climate Change (IPCC) Assessment Report 4 (AR4) model ensemble, we demonstrate that Amazonian temperatures and water stress are both likely to increase over the 21st Century. Curbing deforestation in the Brazilian Amazon by 62% in 2010 relative to the 1990s mean decreased the Brazilian Amazon's deforestation contribution to global land use carbon emissions from 17% in the 1990s and early 2000s to 9% by 2010. Carbon sources in Amazonia are likely to be dominated by climatic impacts allied with forest fires (48.3% relative contribution) during extreme droughts. The current net carbon sink (net biome productivity, NBP) of +0.16 (ranging from +0.11 to +0.21) Pg C year(-1) in the Brazilian Amazon, equivalent to 13.3% of global carbon emissions from land-use change for 2008, can be negated or reversed during drought years [NBP = -0.06 (-0.31 to +0.01) Pg C year(-1) ]. Therefore, reducing forest fires, in addition to reducing deforestation, would be an important measure for minimizing future emissions. Conversely, doubling the current area of secondary forests and avoiding additional removal of primary forests would help the Amazonian gross forest sink to offset approximately 42% of global land-use change emissions. We conclude that a few strategic environmental policy measures are likely to strengthen the Amazonian net carbon sink with global implications. Moreover, these actions could increase the resilience of the net carbon sink to future increases in drought frequency.

  14. DETERMINING OSTEOPOROSIS RISK IN OLDER COLONO ADULTS FROM RURAL AMAZONIAN ECUADOR USING CALCANEAL ULTRASONOMETRY

    Science.gov (United States)

    MADIMENOS, FELICIA C.; LIEBERT, MELISSA A.; CEPON-ROBINS, TARA J.; SNODGRASS, J. JOSH; SUGIYAMA, LAWRENCE S.

    2014-01-01

    Objective Low bone density and osteoporosis prevalence, while well-documented in wealthy nations, are poorly studied in rural, non-clinical contexts in economically-developing regions such as Latin America. This study contributes preliminary osteoporosis risk data for a rural Colono (mestizo) population from Amazonian Ecuador. Methods Anthropometrics were collected for 119 adult participants (74 females, 45 males [50–90 years old]). Heel bone density and T-scores were recorded using calcaneal ultrasonometry Results Approximately 33.6% of the participants had low bone density and were at high-risk for osteoporosis. Four times as many females as males were considered high-risk. Consistent with epidemiological literature, advancing age was significantly associated with lower bone density values (p=0.001). Conclusions Low bone density and osteoporosis prevalence are expected to increase in this and other economically-transitioning populations, yet infrastructure to monitor this changing epidemiological landscape is almost non-existent. Human biologists are uniquely positioned to contribute data from remote populations, a critical step towards initiating increased resource allocation for diagnosis and prevention. PMID:25242164

  15. Studies on the pharmacological activity of Amazonian Euphorbiaceae.

    Science.gov (United States)

    Macrae, W D; Hudson, J B; Towers, G H

    1988-01-01

    Plant material from 34 Amazonian species of the family Euphorbiaceae were collected and extracts prepared. Sixteen of these species have a documented use as a medicinal agent. The extracts were tested for their ability to inhibit the growth of the bacteria, Escherichia coli and Staphylococcus aureus; the yeasts, Saccharomyces cerevisiae and Candida albicans; the dermatophytic fungi, Microsporum canis, Microsporum fulvum, Microsporum gypseum and Trichophyton gallinae; the viruses, Sindbis virus and murine cytomegalovirus; and tumours induced on potato discs by Agrobacterium tumefaciens. They were also examined for their toxicity to brine shrimp, Artemia salina. The results are discussed with respect to ethnobotanical information available for some of the species.

  16. Late Miocene Tidal Deposits in the Amazonian Foreland Basin

    Science.gov (United States)

    Rasanen, Matti E.; Linna, Ari M.; Santos, Jose C. R.; Negri, Francisco R.

    1995-07-01

    Late Miocene tidal sediments of Acre, Brazilian Amazonia, were deposited in an embayment or interior seaway located in the sub-Andean zone. This late Tertiary embayment system may once have connected the Caribbean with the South Atlantic. The tidal coasts of the embayment-seaway have provided an avenue for the earliest waif (over water) dispersal phases of the great American biotic interchange in the late Miocene. The subsequent change from semimarine to terrestrial environments is of value in assessing the importance of earlier hypotheses on the evolution of the western Amazonian landscape and gives insight into the formation of several observed biogeographic patterns, especially of aquatic biota.

  17. A trans-Amazonian screening of mtDNA reveals deep intraspecific divergence in forest birds and suggests a vast underestimation of species diversity.

    Directory of Open Access Journals (Sweden)

    Borja Milá

    Full Text Available The Amazonian avifauna remains severely understudied relative to that of the temperate zone, and its species richness is thought to be underestimated by current taxonomy. Recent molecular systematic studies using mtDNA sequence reveal that traditionally accepted species-level taxa often conceal genetically divergent subspecific lineages found to represent new species upon close taxonomic scrutiny, suggesting that intraspecific mtDNA variation could be useful in species discovery. Surveys of mtDNA variation in Holarctic species have revealed patterns of variation that are largely congruent with species boundaries. However, little information exists on intraspecific divergence in most Amazonian species. Here we screen intraspecific mtDNA genetic variation in 41 Amazonian forest understory species belonging to 36 genera and 17 families in 6 orders, using 758 individual samples from Ecuador and French Guiana. For 13 of these species, we also analyzed trans-Andean populations from the Ecuadorian Chocó. A consistent pattern of deep intraspecific divergence among trans-Amazonian haplogroups was found for 33 of the 41 taxa, and genetic differentiation and genetic diversity among them was highly variable, suggesting a complex range of evolutionary histories. Mean sequence divergence within families was the same as that found in North American birds (13%, yet mean intraspecific divergence in Neotropical species was an order of magnitude larger (2.13% vs. 0.23%, with mean distance between intraspecific lineages reaching 3.56%. We found no clear relationship between genetic distances and differentiation in plumage color. Our results identify numerous genetically and phenotypically divergent lineages which may result in new species-level designations upon closer taxonomic scrutiny and thorough sampling, although lineages in the tropical region could be older than those in the temperate zone without necessarily representing separate species. In

  18. Spatial variation in the population structure and reproductive biology of Rimicaris hybisae (Caridea: Alvinocarididae at hydrothermal vents on the Mid-Cayman Spreading Centre.

    Directory of Open Access Journals (Sweden)

    Verity Nye

    Full Text Available The dynamics and microdistribution of faunal assemblages at hydrothermal vents often reflect the fine-scale spatial and temporal heterogeneity of the vent environment. This study examined the reproductive development and population structure of the caridean shrimp Rimicaris hybisae at the Beebe and Von Damm Vent Fields (Mid-Cayman Spreading Centre, Caribbean using spatially discrete samples collected in January 2012. Rimicaris hybisae is gonochoric and exhibits iteroparous reproduction. Oocyte size-frequency distributions (21-823 µm feret diameters varied significantly among samples. Embryo development was asynchronous among females, which may result in asynchronous larval release for the populations. Specimens of R. hybisae from the Von Damm Vent Field (2294 m were significantly larger than specimens from the Beebe Vent Field. Brooding females at Von Damm exhibited greater size-specific fecundity, possibly as a consequence of a non-linear relationship between fecundity and body size that was consistent across both vent fields. Samples collected from several locations at the Beebe Vent Field (4944-4972 m revealed spatial variability in the sex ratios, population structure, size, and development of oocytes and embryos of this mobile species. Samples from the Von Damm Vent Field and sample J2-613-24 from Beebe Woods exhibited the highest frequencies of ovigerous females and significantly female-biased sex ratios. Environmental variables within shrimp aggregations may influence the distribution of ovigerous females, resulting in a spatially heterogeneous pattern of reproductive development in R. hybisae, as found in other vent taxa.

  19. Spatial genetic structure in natural populations of Phragmites australis in a mosaic of saline habitats in the Yellow River Delta, China.

    Directory of Open Access Journals (Sweden)

    Lexuan Gao

    Full Text Available Determination of spatial genetic structure (SGS in natural populations is important for both theoretical aspects of evolutionary genetics and their application in species conservation and ecological restoration. In this study, we examined genetic diversity within and among the natural populations of a cosmopolitan grass Phragmites australis (common reed in the Yellow River Delta (YRD, China, where a mosaic of habitat patches varying in soil salinity was detected. We demonstrated that, despite their close geographic proximity, the common reed populations in the YRD significantly diverged at six microsatellite loci, exhibiting a strong association of genetic variation with habitat heterogeneity. Genetic distances among populations were best explained as a function of environmental difference, rather than geographical distance. Although the level of genetic divergence among populations was relatively low (F'(ST =0.073, weak but significant genetic differentiation, as well as the concordance between ecological and genetic landscapes, suggests spatial structuring of genotypes in relation to patchy habitats. These findings not only provided insights into the population dynamics of common reed in changing environments, but also demonstrated the feasibility of using habitat patches in a mosaic landscape as test systems to identify appropriate genetic sources for ecological restoration.

  20. A free-access online key to identify Amazonian ferns

    Directory of Open Access Journals (Sweden)

    Gabriela Zuquim

    2017-03-01

    Full Text Available There is urgent need for more data on species distributions in order to improve conservation planning. A crucial but challenging aspect of producing high-quality data is the correct identification of organisms. Traditional printed floras and dichotomous keys are difficult to use for someone not familiar with the technical jargon. In poorly known areas, such as Amazonia, they also become quickly outdated as new species are described or ranges extended. Recently, online tools have allowed developing dynamic, interactive, and accessible keys that make species identification possible for a broader public. In order to facilitate identifying plants collected in field inventories, we developed an internet-based free-access tool to identify Amazonian fern species. We focused on ferns, because they are easy to collect and their edaphic affinities are relatively well known, so they can be used as an indicator group for habitat mapping. Our key includes 302 terrestrial and aquatic entities mainly from lowland Amazonian forests. It is a free-access key, so the user can freely choose which morphological features to use and in which order to assess them. All taxa are richly illustrated, so specimens can be identified by a combination of character choices, visual comparison, and written descriptions. The identification tool was developed in Lucid 3.5 software and it is available at http://keyserver.lucidcentral.org:8080/sandbox/keys.jsp.

  1. Spatial organisation of badgers (Meles meles in a medium-density population in Luxembourg

    Directory of Open Access Journals (Sweden)

    Alain C Frantz

    2010-08-01

    Full Text Available

    Abstract
    Any hypothesis aiming to explain the social organisation of Eurasian badgers Meles meles has to consider its wide inter-population variability. We used radiotracking techniques to investigate the spatial organisation and the pattern of space-use by badger in Luxembourg, where badger density can be considered moderate compared to most of Europe.
    Eight badgers belonging to five social groups were caught and radio-collared. The size of individual home ranges, as assesses by 100% minimum convex polygons in spring-summer 2002 and 2003, varied from 42.5 ha to 171.8 ha. Core areas corresponded to the 50-70% kernel isopleths and covered an average of 10.1% of individual home ranges. The home ranges of badgers caught at the same sett overlapped largely (average 83.3%, whilst the overlap between neighbouring ranges did not exceed 13.8%. Altogether six boundary latrines were found at the intersection of group ranges. Overall, the spatial system of the Luxembourg badgers is quite flexible, with the boundaries of some group ranges remaining constant over the years, while others may expand or contract.
    Riassunto
    Organizzazione spaziale del tasso (Meles meles in una popolazione a media densità del Lussemburgo.
    Qualsiasi ipotesi che voglia spiegare l’organizzazione sociale del tasso Meles meles, deve tener conto della sua ampia variabilità tra le popolazioni.
    Tramite la radiotelemetria e il monitoraggio delle latrine, la struttura territoriale e l’uso dello spazio da parte del tasso sono stati analizzati in una popolazione del Lussemburgo, dove la densità della specie può essere considerata intermedia rispetto ai valori noti per il resto dell’Europa.
    Sono stati marcati con radio-collari otto tassi, appartenenti a cinque diversi gruppi sociali. Le dimensioni delle aree vitali, stimate con il minimo poligono convesso al 100

  2. Prospects for malaria elimination in non-Amazonian regions of Latin America.

    Science.gov (United States)

    Herrera, Sócrates; Quiñones, Martha Lucia; Quintero, Juan Pablo; Corredor, Vladimir; Fuller, Douglas O; Mateus, Julio Cesar; Calzada, Jose E; Gutierrez, Juan B; Llanos, Alejandro; Soto, Edison; Menendez, Clara; Wu, Yimin; Alonso, Pedro; Carrasquilla, Gabriel; Galinski, Mary; Beier, John C; Arévalo-Herrera, Myriam

    2012-03-01

    Latin America contributes 1-1.2 million clinical malaria cases to the global malaria burden of about 300 million per year. In 21 malaria endemic countries, the population at risk in this region represents less than 10% of the total population exposed worldwide. Factors such as rapid deforestation, inadequate agricultural practices, climate change, political instability, and both increasing parasite drug resistance and vector resistance to insecticides contribute to malaria transmission. Recently, several malaria endemic countries have experienced a significant reduction in numbers of malaria cases. This is most likely due to actions taken by National Malaria Control Programs (NMCP) with the support from international funding agencies. We describe here the research strategies and activities to be undertaken by the Centro Latino Americano de Investigación en Malaria (CLAIM), a new research center established for the non-Amazonian region of Latin America by the National Institute of Allergy and Infectious Diseases (NIAID). Throughout a network of countries in the region, initially including Colombia, Guatemala, Panama, and Peru, CLAIM will address major gaps in our understanding of changing malaria epidemiology, vector biology and control, and clinical malaria mainly due to Plasmodium vivax. In close partnership with NMCPs, CLAIM seeks to conduct research on how and why malaria is decreasing in many countries of the region as a basis for developing and implementing new strategies that will accelerate malaria elimination.

  3. Clinical spectrum of uncomplicated malaria in semi-immune Amazonians: beyond the " symptomatic " vs " asymptomatic " dichotomy

    Directory of Open Access Journals (Sweden)

    Mônica da Silva-Nunes

    2007-06-01

    Full Text Available We analyzed prospectively 326 laboratory-confirmed, uncomplicated malarial infections (46.3% due to Plasmodium vivax, 35.3% due to P. falciparum, and 18.4% mixed-species infections diagnosed in 162 rural Amazonians aged 5-73 years. Thirteen symptoms (fever, chills, sweating, headache, myalgia, arthralgia, abdominal pain, nausea, vomiting, dizziness, cough, dyspnea, and diarrhea were scored using a structured questionnaire. Headache (59.8%, fever (57.1%, and myalgia (48.4% were the most frequent symptoms. Ninety-six (29.4% episodes, all of them diagnosed during cross-sectional surveys of the whole study population (96.9% by molecular technique only, were asymptomatic. Of 93 symptom-less infections left untreated, only 10 became symptomatic over the next two months following diagnosis. Fever was perceived as " intense " in 52.6% of 230 symptomatic malaria episodes, with no fever reported in 19.1% episodes although other symptoms were present. We found significant differences in the prevalence and perceived intensity of fever and other clinical symptoms in relation to parasite load at the time of diagnosis and patient's age, cumulative exposure to malaria, recent malaria morbidity, and species of malaria parasite. These factors are all likely to affect the effectiveness of malaria control strategies based on active or passive detection of febrile subjects in semi-immune populations.

  4. Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing

    DEFF Research Database (Denmark)

    Heath, Michael R.; Culling, Mark A.; Crozier, Walter W.

    2014-01-01

    Conserving genetic diversity in animal populations is important for sustaining their ability to respond to environmental change. However, the “between-population” component of genetic diversity (biocomplexity) is threatened in many exploited populations, particularly marine fish, where harvest...... North Sea (Viking) unit by the more widespread (Dogger) unit, and its premature extinction under some spatial patterns of fishing. Fishery catch limits for cod are set at the scale of the whole North Sea without regard to such subpopulation dynamics. Our model offers a method to quantify adjustments...

  5. Mosquito-Producing Containers, Spatial Distribution, and Relationship between Aedes aegypti Population Indices on the Southern Boundary of its Distribution in South America (Salto, Uruguay)

    Science.gov (United States)

    Basso, César; Caffera, Ruben M.; García da Rosa, Elsa; Lairihoy, Rosario; González, Cristina; Norbis, Walter; Roche, Ingrid

    2012-01-01

    A study was conducted in the city of Salto, Uruguay, to identify mosquito-producing containers, the spatial distribution of mosquitoes and the relationship between the different population indices of Aedes aegypti. On each of 312 premises visited, water-filled containers and immature Ae. aegypti mosquitoes were identified. The containers were counted and classified into six categories. Pupae per person and Stegomyia indices were calculated. Pupae per person were represented spatially. The number of each type of container and number of mosquitoes in each were analyzed and compared, and their spatial distribution was analyzed. No significant differences in the number of the different types of containers with mosquitoes or in the number of mosquitoes in each were found. The distribution of the containers with mosquito was random and the distribution of mosquitoes by type of container was aggregated or highly aggregated. PMID:23128295

  6. A management-oriented framework for selecting metrics used to assess habitat- and path-specific quality in spatially structured populations

    Science.gov (United States)

    Sam Nicol,; Ruscena Wiederholt,; Diffendorfer, James E.; Brady Mattsson,; Thogmartin, Wayne E.; Semmens, Darius J.; Laura Lopez-Hoffman,; Ryan Norris,

    2016-01-01

    Mobile species with complex spatial dynamics can be difficult to manage because their population distributions vary across space and time, and because the consequences of managing particular habitats are uncertain when evaluated at the level of the entire population. Metrics to assess the importance of habitats and pathways connecting habitats in a network are necessary to guide a variety of management decisions. Given the many metrics developed for spatially structured models, it can be challenging to select the most appropriate one for a particular decision. To guide the management of spatially structured populations, we define three classes of metrics describing habitat and pathway quality based on their data requirements (graph-based, occupancy-based, and demographic-based metrics) and synopsize the ecological literature relating to these classes. Applying the first steps of a formal decision-making approach (problem framing, objectives, and management actions), we assess the utility of metrics for particular types of management decisions. Our framework can help managers with problem framing, choosing metrics of habitat and pathway quality, and to elucidate the data needs for a particular metric. Our goal is to help managers to narrow the range of suitable metrics for a management project, and aid in decision-making to make the best use of limited resources.

  7. Responses of squirrel monkeys to seasonal changes in food availability in an eastern Amazonian forest.

    Science.gov (United States)

    Stone, Anita I

    2007-02-01

    Tropical forests are characterized by marked temporal and spatial variation in productivity, and many primates face foraging problems associated with seasonal shifts in fruit availability. In this study, I examined seasonal changes in diet and foraging behaviors of two groups of squirrel monkeys (Saimiri sciureus), studied for 12 months in Eastern Brazilian Amazonia, an area characterized by seasonal rainfall. Squirrel monkeys were primarily insectivorous (79% of feeding and foraging time), with fruit consumption highest during the rainy season. Although monkeys fed from 68 plant species, fruit of Attalea maripa palms accounted for 28% of annual fruit-feeding records. Dietary shifts in the dry season were correlated with a decline in ripe A. maripa fruits. Despite pronounced seasonal variation in rainfall and fruit abundance, foraging efficiency, travel time, and distance traveled remained stable between seasons. Instead, squirrel monkeys at this Eastern Amazonian site primarily dealt with the seasonal decline in fruit by showing dietary flexibility. Consumption of insects, flowers, and exudates increased during the dry season. In particular, their foraging behavior at this time strongly resembled that of tamarins (Saguinus sp.) and consisted of heavy use of seed-pod exudates and specialized foraging on large-bodied orthopterans near the forest floor. Comparisons with squirrel monkeys at other locations indicate that, across their geographic range, Saimiri use a variety of behavioral tactics during reduced periods of fruit availability.

  8. Ground-Vegetation Clutter Affects Phyllostomid Bat Assemblage Structure in Lowland Amazonian Forest.

    Science.gov (United States)

    Marciente, Rodrigo; Bobrowiec, Paulo Estefano D; Magnusson, William E

    2015-01-01

    Vegetation clutter is a limiting factor for bats that forage near ground level, and may determine the distribution of species and guilds. However, many studies that evaluated the effects of vegetation clutter on bats have used qualitative descriptions rather than direct measurements of vegetation density. Moreover, few studies have evaluated the effect of vegetation clutter on a regional scale. Here, we evaluate the influence of the physical obstruction of vegetation on phyllostomid-bat assemblages along a 520 km transect in continuous Amazonian forest. We sampled bats using mist nets in eight localities during 80 nights (3840 net-hours) and estimated the ground-vegetation density with digital photographs. The total number of species, number of animalivorous species, total number of frugivorous species, number of understory frugivorous species, and abundance of canopy frugivorous bats were negatively associated with vegetation clutter. The bat assemblages showed a nested structure in relation to degree of clutter, with animalivorous and understory frugivorous bats distributed throughout the vegetation-clutter gradient, while canopy frugivores were restricted to sites with more open vegetation. The species distribution along the gradient of vegetation clutter was not closely associated with wing morphology, but aspect ratio and wing load differed between frugivores and animalivores. Vegetation structure plays an important role in structuring assemblages of the bats at the regional scale by increasing beta diversity between sites. Differences in foraging strategy and diet of the guilds seem to have contributed more to the spatial distribution of bats than the wing characteristics of the species alone.

  9. Characterizing the spatial distribution of brown marmorated stink bug, Halyomorpha halys Stål (Hemiptera: Pentatomidae), populations in peach orchards

    Science.gov (United States)

    Hahn, Noel G.

    2017-01-01

    Geospatial analyses were used to investigate the spatial distribution of populations of Halyomorpha halys, an important invasive agricultural pest in mid-Atlantic peach orchards. This spatial analysis will improve efficiency by allowing growers and farm managers to predict insect arrangement and target management strategies. Data on the presence of H. halys were collected from five peach orchards at four farms in New Jersey from 2012–2014 located in different land-use contexts. A point pattern analysis, using Ripley’s K function, was used to describe clustering of H. halys. In addition, the clustering of damage indicative of H. halys feeding was described. With low populations early in the growing season, H. halys did not exhibit signs of clustering in the orchards at most distances. At sites with low populations throughout the season, clustering was not apparent. However, later in the season, high infestation levels led to more evident clustering of H. halys. Damage, although present throughout the entire orchard, was found at low levels. When looking at trees with greater than 10% fruit damage, damage was shown to cluster in orchards. The Moran’s I statistic showed that spatial autocorrelation of H. halys was present within the orchards on the August sample dates, in relation to both populations density and levels of damage. Kriging the abundance of H. halys and the severity of damage to peaches revealed that the estimations of these are generally found in the same region of the orchards. This information on the clustering of H. halys populations will be useful to help predict presence of insects for use in management or scouting programs. PMID:28362797

  10. Inbreeding in stochastic subdivided mating systems: the genetic consequences of host spatial structure, aggregated transmission dynamics and life history characteristics in parasite populations

    Indian Academy of Sciences (India)

    Guha Dharmarajan

    2015-03-01

    Inbreeding in parasite populations can have important epidemiological and evolutionary implications. However, theoretical models have predominantly focussed on the evolution of parasite populations under strong selection or in epidemic situations, and our understanding of neutral gene dynamics in parasite populations at equilibrium has been limited to verbal arguments or conceptual models. This study focusses on how host–parasite population dynamics affects observed levels of inbreeding in a random sample of parasites from an infinite population of hosts by bridging traditional genetic and parasitological processes utilizing a backward–forward branching Markov process embedded within a flexible statistical framework, the logarithmic-poisson mixture model. My results indicate that levels of inbreeding in parasites are impacted by demographic and/or transmission dynamics (subdivided mating, aggregated transmission dynamics and host spatial structure), and that this inbreeding is poorly estimated by ‘equilibrium’ levels of inbreeding calculated assuming regular systems of mating. Specifically, the model reveals that at low levels of inbreeding ( ≤ 0.1), equilibrium levels of inbreeding are lower than those observed, while at high levels of inbreeding the opposite pattern occurs. The model also indicates that inbreeding could have important epidemiological implications (e.g., the spread of recessive drug resistance genes) by directly impacting the observed frequency of rare homozygotes in parasite populations. My results indicate that frequencies of rare homozygotes are affected by aggregated transmission dynamics and host spatial structure, and also that an increase in the frequency of rare homozygotes can be caused by a decrease in effective population size solely due to the presence of a subdivided breeding system.

  11. Unihemispheric slow-wave sleep in the Amazonian dolphin, Inia geoffrensis.

    Science.gov (United States)

    Mukhametov, L M

    1987-08-18

    An electroencephalographic study of sleep in Amazonian dolphins, Inia geoffrensis, revealed that unihemispheric slow-wave sleep is the dominant sleep type in this species, as in the other two dolphin species that were studied earlier.

  12. Draft Genome Sequence of Microcystis aeruginosa CACIAM 03, a Cyanobacterium Isolated from an Amazonian Freshwater Environment

    Science.gov (United States)

    Castro, Wendel Oliveira; Lima, Alex Ranieri Jerônimo; Moraes, Pablo Henrique Gonçalves; Siqueira, Andrei Santos; Aguiar, Délia Cristina Figueira; Baraúna, Anna Rafaella Ferreira; Martins, Luisa Carício; Fuzii, Hellen Thais; de Lima, Clayton Pereira Silva; Vianez-Júnior, João Lídio Silva Gonçalves; Nunes, Márcio Roberto Teixeira; Dall'Agnol, Leonardo Teixeira

    2016-01-01

    Given its toxigenic potential, Microcystis aeruginosa is an important bloom-forming cyanobacterium. Here, we present a draft genome and annotation of the strain CACIAM 03, which was isolated from an Amazonian freshwater environment. PMID:27856592

  13. C dynamics in Amazonian podzols under climate change

    Science.gov (United States)

    Nunan, Naoise; Soro, Andre; Potard, Kevin; Pouteau, Valerie; Montes, Celia; Melphi, Adolpho; Lucas, Yves; Chenu, Claire

    2016-04-01

    It has recently been shown that the C stocks in Amazonian podzols are very large. They are much larger than was previously thought, particularly in the Bh horizon, which has been estimated to contain in excess of 13Pg C for Amazonia alone. It is predicted that the changes in regional climate will result in a drier soil water regime which may affect the C dynamics in these soils that are usually saturated. In order to determine the vulnerability to change of the organic C contained in the Amazonian podzols, a series of incubation experiments were established in which the effects of a number of different factors on microbial decomposition were measured. The direct effect of drier soil water regimes was tested by incubating undisturbed cores from the Bh horizon at a range of matric potentials (saturation to wilting point). Contrary to what is usually found in soils, no significant difference in mineralisation was found among matric potentials, suggesting that other factors control microbial mineralisation of this organic C. The effect of nitrogen additions, of anaerobic conditions and of the addition labile C substrate were also tested on undisturbed cores of the Bh horizon of the podzols. Samples incubated under aerobic conditions produced 3 times more CO2 than samples incubated under anaerobic conditions, whilst samples incubated under aerobic conditions with the addition of N mineralised 6.7 times more CO2 than the anaerobic samples. The addition of labile C did not have a significant effect on C mineralisation, i.e. there was no priming effect. The combined addition of labile C and mineral N did not stimulate C mineralisation more than N additions alone. By extrapolating the differences obtained here to the whole of the Amazonian podzols, it is estimated that changes in conditions which result in an increase in O2 and in N (i.e. changes in vegetation due to increases in dry periods with the establishment of a savanna for example) in the soil will cause the release

  14. Mapping phytophysiognomies to undisclosed past landscape in an Amazonian wetland

    Science.gov (United States)

    Cremon, E.; Rossetti, D.; Zani, H.

    2012-12-01

    Wetlands cover 800,000 km2 in the Amazon basin, and these not distributed randomly in the landscape. These areas record a complex geomorphological history during the late Quaternary, mainly due to interplay of tectonics and climatic changes, which resulted in high volumes of sediment deposited in renewed accommodation spaces. It is interesting that these wetlands are highlighted by open vegetation of non-random distribution in contrast with the surrounding rainforest. In general, natural patches of open vegetation within the Amazonian forest have been most often assigned to past arid climatic episodes, or contrasting soil properties. In this work, we analyzed the relationship between geomorphology and the distribution of vegetation patterns over an Amazonian wetland located in the interfluve of the Negro and Branco Rivers. This area is interesting because it contains one of the largest (i.e., more than 100 km in length and 50 km in width) patches of open vegetation (mostly grassland campinarana) in sharp contrast with the rainforest. The main goal was to perform a phytophysiognomic map based on decision tree classifier and data mining of reflectance factor and backscattering using TM/Landsat (dry season) and PALSAR (wet season) images. Five phytophysiognomies were categorized: rainforest; flooded forest; wooded open vegetation; grassy-shrubby open vegetation; and water body. The output map showed an overall accuracy of 94% and Kappa index of 0.93 (p grassy, shrubby and woody) from forested areas (rainforest and flooded forest). Together with the visual interpretation of remote sensing products, the achieved phytophysiognomic map served as the basis for a geomorphological interpretation of the study area. Hence, grassy and shrubby open vegetation class defines a triangular, cone-shaped morphology sharply bounded by flooded and dense forests. Within the open forest, there are also numerous, narrow and elongated belts of wooded open vegetation and forest, which

  15. Interaction between spatial domain and spatial reference frame in deaf and hearing populations%听障和听力正常人群空间主导性和空间参照框架的交互作用

    Institute of Scientific and Technical Information of China (English)

    王爱君; 沈路; 迟莹莹; 刘晓乐; 陈骐; 张明

    2016-01-01

    Spatial location of an object can be represented in the human brain based on allocentric and egocentric reference frames. The perception/action hypothesis of the ventral and dorsal visual streams proposed that egocentric representations are readily encoded in the dorsal stream as sensorimotor representations, and allocentric representations are encoded in the ventral stream as perceptual representations. In addition, the dorsal visual stream, which transforms visual information into sensorimotor representations is implicated in near-space processing, and the ventral stream, which transforms visual information into perceptual representations is involved in the conscious perception of objects in far space. It has been well documented that how the spatial domain and spatial reference frame works, separately. However, it remains poorly understood how the spatial domain interacts with spatial reference frame, especially for the deaf populations. In present study, we synchronously operated different spatial domains (near vs. far) and different spatial reference frames (egocentric vs. allocentric) to investigate the potential interactions in deaf and hearing populations. By asking 17 congenitally deaf participants and 17 hearing participants to perform allocentric and egocentric judgment tasks on the same stimulus set in near and far spaces, respectively, forming a 2 by 2 factorial design in Experiment 1. The stimuli in each trial contained two 3-D objects: a fork on the top of a round orange plate. In near space, stimuli were presented on a screen with the eye-to-screen distance as 50 cm, and in far space, stimuli were presented via a projector on a screen with the eye-to-screen distance as 226 cm. Retinotopic sizes of the objects and visual angles of the egocentric and allocentric distances were both matched for near and far spaces. To test the sense of balance was impaired in the deaf group of the present experiment, we asked both groups to perform a open loop pointing

  16. Population-based surveillance of pediatric pneumonia: use of spatial analysis in an urban area of Central Brazil

    Directory of Open Access Journals (Sweden)

    Ana Lúcia Sampaio Sgambatti de Andrade

    Full Text Available This study examined the spatial distribution of childhood community-acquired pneumonia detected through prospective surveillance in Goiânia, Brazil. Three spatial analysis techniques were applied to detect intra-urban geographic aggregation of pneumonia cases: Kernel method, nearest neighbor hierarchical technique, and spatial scan statistic. A total of 724 pneumonia cases confirmed by chest radiography were identified from May 2000 to August 2001. All cases were geocoded on a digital map. The annual pneumonia risk rate was estimated at 566 cases/100,000 children. Analysis using traditional descriptive epidemiology showed a mosaic distribution of pneumonia rates, while GIS methodologies showed a non-random pattern with hot spots of pneumonia. Cluster analysis by spatial scan statistic identified two high-risk areas for pneumonia occurrence, including one most likely cluster (RR = 2.1; p < 0.01 and one secondary cluster (RR = 1.3; p = 0.01. The data used for the study are in line with recent WHO-led efforts to improve and standardize pediatric pneumonia surveillance in developing countries and show how GIS and spatial analysis can be applied to discriminate target areas of pneumonia for public heath intervention.

  17. Population-based surveillance of pediatric pneumonia: use of spatial analysis in an urban area of Central Brazil

    Directory of Open Access Journals (Sweden)

    Andrade Ana Lúcia Sampaio Sgambatti de

    2004-01-01

    Full Text Available This study examined the spatial distribution of childhood community-acquired pneumonia detected through prospective surveillance in Goiânia, Brazil. Three spatial analysis techniques were applied to detect intra-urban geographic aggregation of pneumonia cases: Kernel method, nearest neighbor hierarchical technique, and spatial scan statistic. A total of 724 pneumonia cases confirmed by chest radiography were identified from May 2000 to August 2001. All cases were geocoded on a digital map. The annual pneumonia risk rate was estimated at 566 cases/100,000 children. Analysis using traditional descriptive epidemiology showed a mosaic distribution of pneumonia rates, while GIS methodologies showed a non-random pattern with hot spots of pneumonia. Cluster analysis by spatial scan statistic identified two high-risk areas for pneumonia occurrence, including one most likely cluster (RR = 2.1; p < 0.01 and one secondary cluster (RR = 1.3; p = 0.01. The data used for the study are in line with recent WHO-led efforts to improve and standardize pediatric pneumonia surveillance in developing countries and show how GIS and spatial analysis can be applied to discriminate target areas of pneumonia for public heath intervention.

  18. Spatial and temporal variation in the abundance, distribution and population structure of epibenthic megafauna in Port Foster, Deception Island

    Science.gov (United States)

    Cranmer, T. L.; Ruhl, H. A.; Baldwin, R. J.; Kaufmann, R. S.

    2003-06-01

    Abundance and spatial distribution of epibenthic megafauna were examined at Port Foster, Deception Island, five times between March 1999 and November 2000. Camera sled surveys and bottom trawls were used to identify and collect specimens, and camera sled photographs also were used to determine abundances and spatial distributions for each species. The ophiuroid Ophionotus victoriae, the regular echinoid Sterechinus neumayeri, and one or more species of Porifera were the most abundant taxa during this sampling period. Abundances of O. victoriae varied throughout the annual cycle, peaking in June 2000, and were correlated positively with sedimentation rates. In contrast, abundances of S. neumayeri were consistent throughout the sampling period, except for a peak in June 2000, during austral winter. Peak abundances for both species coincided with a large number of small individuals, indicating apparent recruitment events for O. victoriae and S. neumayeri during this time period. Poriferans, as a group, had statistically similar abundances during each sampling period. Low-abundance species tended to be aggregated on both small and large spatial scales, their distributions probably influenced by reproductive method, gregarious settlement, and food availability. The spatial distribution of S. neumayeri in June 2000 and O. victoriae was random across multiple spatial scales, perhaps in response to food availability and broad environmental tolerances, respectively.

  19. Spatial Amphibian Impact Assessment – a management tool for assessment of road effects on regional populations of Moor frogs (Rana arvalis

    Directory of Open Access Journals (Sweden)

    Maj-Britt Pontoppidan

    2013-11-01

    Full Text Available An expanding network of roads and railways fragments natural habitat affecting the amount and quality of habitat and reducing connectivity between habitat patches with severe consequences for biodiversity and population persistence. To ensure an ecologically sustainable transportation system it is essential to find agreement between nature conservation and land use. However, sustainable road planning requires adequate tools for assessment, prevention and mitigation of the impacts of infrastructure. In this study, we present a spatially explicit model, SAIA (Spatial Amphibian Impact Assessment, to be used as a standardized and quantitative tool for assessing the impact of roads on pond-breeding amphibians. The model considers a landscape mosaic of breeding habitat, summer habitat and uninhabitable land. As input, we use a GIS-map of the landscape with information on land cover as well as data on observed frog populations in the survey area. The dispersal of juvenile frogs is simulated by means of individual-based modelling, while a population-based model is used for simulating population dynamics. In combination the two types of models generate output on landscape connectivity and population viability. Analyses of maps without the planned road constructions will constitute a “null-model” against which other scenarios can be compared, making it possible to assess the effect of road projects on landscape connectivity and population dynamics. Analyses and comparisons of several alternative road projects can identify the least harmful solution. The effect of mitigation measures, such as new breeding ponds and underpasses, can be evaluated by incorporating them in the maps, thereby enhancing the utility of the model as a management tool in Environmental Impact Assessments. We demonstrate how SAIA can be used to assess which management measures would be best to mitigate the effect of landscape fragmentation caused by road constructions by means of

  20. Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations.

    Science.gov (United States)

    Csilléry, Katalin; Lalagüe, Hadrien; Vendramin, Giovanni G; González-Martínez, Santiago C; Fady, Bruno; Oddou-Muratorio, Sylvie

    2014-10-01

    Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the northern and southern slopes of Mont Ventoux (south-eastern France). We performed both single and multilocus analysis of selection based on 53 climate-related candidate genes containing 546 SNPs. FST outlier methods at the SNP level revealed a weak signal of selection, with three marginally significant outliers in the northern populations. At the gene level, considering haplotypes as alleles, two additional marginally significant outliers were detected, one on each slope. To account for the uncertainty of haplotype inference, we averaged the Bayes factors over many possible phase reconstructions. Epistatic selection offers a realistic multilocus model of selection in natural populations. Here, we used a test suggested by Ohta based on the decomposition of the variance of linkage disequilibrium. Overall populations, 0.23% of the SNP pairs (haplotypes) showed evidence of epistatic selection, with nearly 80% of them being within genes. One of the between gene epistatic selection signals arose between an FST outlier and a nonsynonymous mutation in a drought response gene. Additionally, we identified haplotypes containing selectively advantageous allele combinations which were unique to high or low elevations and northern or southern populations. Several haplotypes contained nonsynonymous mutations situated in genes with known functional importance for adaptation to climatic factors.

  1. Fast demographic traits promote high diversification rates of Amazonian trees

    Science.gov (United States)

    Baker, Timothy R; Pennington, R Toby; Magallon, Susana; Gloor, Emanuel; Laurance, William F; Alexiades, Miguel; Alvarez, Esteban; Araujo, Alejandro; Arets, Eric J M M; Aymard, Gerardo; de Oliveira, Atila Alves; Amaral, Iêda; Arroyo, Luzmila; Bonal, Damien; Brienen, Roel J W; Chave, Jerome; Dexter, Kyle G; Di Fiore, Anthony; Eler, Eduardo; Feldpausch, Ted R; Ferreira, Leandro; Lopez-Gonzalez, Gabriela; van der Heijden, Geertje; Higuchi, Niro; Honorio, Eurídice; Huamantupa, Isau; Killeen, Tim J; Laurance, Susan; Leaño, Claudio; Lewis, Simon L; Malhi, Yadvinder; Marimon, Beatriz Schwantes; Marimon Junior, Ben Hur; Monteagudo Mendoza, Abel; Neill, David; Peñuela-Mora, Maria Cristina; Pitman, Nigel; Prieto, Adriana; Quesada, Carlos A; Ramírez, Fredy; Ramírez Angulo, Hirma; Rudas, Agustin; Ruschel, Ademir R; Salomão, Rafael P; de Andrade, Ana Segalin; Silva, J Natalino M; Silveira, Marcos; Simon, Marcelo F; Spironello, Wilson; ter Steege, Hans; Terborgh, John; Toledo, Marisol; Torres-Lezama, Armando; Vasquez, Rodolfo; Vieira, Ima Célia Guimarães; Vilanova, Emilio; Vos, Vincent A; Phillips, Oliver L; Wiens, John

    2014-01-01

    The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show that fast demographic traits – short turnover times – are associated with high diversification rates across 51 clades of canopy trees. This relationship is robust to assuming that diversification rates are either constant or decline over time, and occurs in a wide range of Neotropical tree lineages. This finding reveals the crucial role of intrinsic, ecological variation among clades for understanding the origin of the remarkable diversity of Amazonian trees and forests. PMID:24589190

  2. Impact of pre-Columbian "geoglyph" builders on Amazonian forests.

    Science.gov (United States)

    Watling, Jennifer; Iriarte, José; Mayle, Francis E; Schaan, Denise; Pessenda, Luiz C R; Loader, Neil J; Street-Perrott, F Alayne; Dickau, Ruth E; Damasceno, Antonia; Ranzi, Alceu

    2017-02-21

    Over 450 pre-Columbian (pre-AD 1492) geometric ditched enclosures ("geoglyphs") occupy ∼13,000 km(2) of Acre state, Brazil, representing a key discovery of Amazonian archaeology. These huge earthworks were concealed for centuries under terra firme (upland interfluvial) rainforest, directly challenging the "pristine" status of this ecosystem and its perceived vulnerability to human impacts. We reconstruct the environmental context of geoglyph construction and the nature, extent, and legacy of associated human impacts. We show that bamboo forest dominated the region for ≥6,000 y and that only small, temporary clearings were made to build the geoglyphs; however, construction occurred within anthropogenic forest that had been actively managed for millennia. In the absence of widespread deforestation, exploitation of forest products shaped a largely forested landscape that survived intact until the late 20th century.

  3. Temporal Decay in Timber Species Composition and Value in Amazonian Logging Concessions

    Science.gov (United States)

    Peres, Carlos A.

    2016-01-01

    Throughout human history, slow-renewal biological resource populations have been predictably overexploited, often to the point of economic extinction. We assess whether and how this has occurred with timber resources in the Brazilian Amazon. The asynchronous advance of industrial-scale logging frontiers has left regional-scale forest landscapes with varying histories of logging. Initial harvests in unlogged forests can be highly selective, targeting slow-growing, high-grade, shade-tolerant hardwood species, while later harvests tend to focus on fast-growing, light-wooded, long-lived pioneer trees. Brazil accounts for 85% of all native neotropical forest roundlog production, and the State of Pará for almost half of all timber production in Brazilian Amazonia, the largest old-growth tropical timber reserve controlled by any country. Yet the degree to which timber harvests beyond the first-cut can be financially profitable or demographically sustainable remains poorly understood. Here, we use data on legally planned logging of ~17.3 million cubic meters of timber across 314 species extracted from 824 authorized harvest areas in private and community-owned forests, 446 of which reported volumetric composition data by timber species. We document patterns of timber extraction by volume, species composition, and monetary value along aging eastern Amazonian logging frontiers, which are then explained on the basis of historical and environmental variables. Generalized linear models indicate that relatively recent logging operations farthest from heavy-traffic roads are the most selective, concentrating gross revenues on few high-value species. We find no evidence that the post-logging timber species composition and total value of forest stands recovers beyond the first-cut, suggesting that the commercially most valuable timber species become predictably rare or economically extinct in old logging frontiers. In avoiding even more destructive land-use patterns, managing

  4. Drought sensitivity of Amazonian carbon balance revealed by atmospheric measurements.

    Science.gov (United States)

    Gatti, L V; Gloor, M; Miller, J B; Doughty, C E; Malhi, Y; Domingues, L G; Basso, L S; Martinewski, A; Correia, C S C; Borges, V F; Freitas, S; Braz, R; Anderson, L O; Rocha, H; Grace, J; Phillips, O L; Lloyd, J

    2014-02-06

    Feedbacks between land carbon pools and climate provide one of the largest sources of uncertainty in our predictions of global climate. Estimates of the sensitivity of the terrestrial carbon budget to climate anomalies in the tropics and the identification of the mechanisms responsible for feedback effects remain uncertain. The Amazon basin stores a vast amount of carbon, and has experienced increasingly higher temperatures and more frequent floods and droughts over the past two decades. Here we report seasonal and annual carbon balances across the Amazon basin, based on carbon dioxide and carbon monoxide measurements for the anomalously dry and wet years 2010 and 2011, respectively. We find that the Amazon basin lost 0.48 ± 0.18 petagrams of carbon per year (Pg C yr(-1)) during the dry year but was carbon neutral (0.06 ± 0.1 Pg C yr(-1)) during the wet year. Taking into account carbon losses from fire by using carbon monoxide measurements, we derived the basin net biome exchange (that is, the carbon flux between the non-burned forest and the atmosphere) revealing that during the dry year, vegetation was carbon neutral. During the wet year, vegetation was a net carbon sink of 0.25 ± 0.14 Pg C yr(-1), which is roughly consistent with the mean long-term intact-forest biomass sink of 0.39 ± 0.10 Pg C yr(-1) previously estimated from forest censuses. Observations from Amazonian forest plots suggest the suppression of photosynthesis during drought as the primary cause for the 2010 sink neutralization. Overall, our results suggest that moisture has an important role in determining the Amazonian carbon balance. If the recent trend of increasing precipitation extremes persists, the Amazon may become an increasing carbon source as a result of both emissions from fires and the suppression of net biome exchange by drought.

  5. Spatial distribution and esterase activity in populations of Aedes (Stegomyia aegypti (Linnaeus (Diptera: Culicidae resistant to temephos

    Directory of Open Access Journals (Sweden)

    Wanessa Porto Tito Gambarra

    2013-04-01

    Full Text Available INTRODUCTION: The need for studies that describe the resistance patterns in populations of Aedes aegypti (Linnaeus in function of their region of origin justified this research, which aimed to characterize the resistance to temephos and to obtain information on esterase activity in populations of Aedes aegypti collected in municipalities of the State of Paraíba. METHODS: Resistance to temephos was evaluated and characterized from the diagnostic dose of 0.352mg i.a./L and multiple concentrations that caused mortalities between 5% and 99%. Electrophoresis of isoenzymes was used to verify the patterns of esterase activity among populations of the vector. RESULTS: All populations of Aedes aegypti were resistant to temephos, presenting a resistance rate (RR greater than 20. The greatest lethal dose 50% of the sample (CL50 was found for the municipality of Lagoa Seca, approximately forty-one times the value of CL50 for the Rockefeller population. The populations characterized as resistant showed two to six regions of α and β-esterase, called EST-1 to EST-6, while the susceptible population was only seen in one region of activity. CONCLUSIONS: Aedes aegypti is widely distributed and shows a high degree of resistance to temephos in all municipalities studied. In all cases, esterases are involved in the metabolism and, consequently, in the resistance to temephos.

  6. Spatial distribution and esterase activity in populations of Aedes (Stegomyia aegypti (Linnaeus (Diptera: Culicidae resistant to temephos

    Directory of Open Access Journals (Sweden)

    Wanessa Porto Tito Gambarra

    2013-09-01

    Full Text Available INTRODUCTION: The need for studies that describe the resistance patterns in populations of Aedes aegypti (Linnaeus in function of their region of origin justified this research, which aimed to characterize the resistance to temephos and to obtain information on esterase activity in populations of Aedes aegypti collected in municipalities of the State of Paraíba. METHODS: Resistance to temephos was evaluated and characterized from the diagnostic dose of 0.352mg i.a./L and multiple concentrations that caused mortalities between 5% and 99%. Electrophoresis of isoenzymes was used to verify the patterns of esterase activity among populations of the vector. RESULTS: All populations of Aedes aegypti were resistant to temephos, presenting a resistance rate (RR greater than 20. The greatest lethal dose 50% of the sample (CL50 was found for the municipality of Lagoa Seca, approximately forty-one times the value of CL50 for the Rockefeller population. The populations characterized as resistant showed two to six regions of α and β-esterase, called EST-1 to EST-6, while the susceptible population was only seen in one region of activity. CONCLUSIONS: Aedes aegypti is widely distributed and shows a high degree of resistance to temephos in all municipalities studied. In all cases, esterases are involved in the metabolism and, consequently, in the resistance to temephos.

  7. A spatial analysis of a population of red fox (Vulpes vulpes) in the Dutch coastal dune area

    NARCIS (Netherlands)

    Dekker, J.J.A.; Stein, A.; Heitkönig, I.M.A.

    2001-01-01

    The red fox Vulpes vulpes is usually classi?ed as being territorial, dispersing or transient. Past studies have focused almost exclusively on territorial or dispersing foxes, leaving transient foxes out of the analysis. In this paper, we present spatial-statistical methods for the classi?cation of f

  8. Spatial distribution of populations of solitarious adult desert locust (Schistocerca gregaria Forsk.) on the coastal plain of Sudan

    NARCIS (Netherlands)

    Woldewahid, G.; Werf, van der W.; Huis, van A.; Stein, A.

    2004-01-01

    1 Densities of solitarious adult desert locusts were measured on regular grids of up to 126 sample sites in the southern part of the coastal plain of Sudan during the winters of 1999/2000 and 2000/2001. Geostatistical procedures were used to characterize spatial dependence of locust density, to eval

  9. Spatial behaviour of little owls (Athene noctua) in a declining low-density population in Denmark

    DEFF Research Database (Denmark)

    Sunde, Peter; Thorup, Kasper; Jacobsen, Lars Bo

    2009-01-01

    Knowledge of a species' spatial behaviour is essential for understanding its behavioural ecology and a prerequisite to planning of conservation strategies. The little owl has shown a substantial decline in North-western Europe and is on the road of extinction in Denmark. To quantify relevant...

  10. Analysing Amazonian forest productivity using a new individual and trait-based model (TFS v.1

    Directory of Open Access Journals (Sweden)

    N. M. Fyllas

    2014-02-01

    Full Text Available Repeated long-term censuses have revealed large-scale spatial patterns in Amazon Basin forest structure and dynamism, with some forests in the west of the Basin having up to a twice as high rate of aboveground biomass production and tree recruitment as forests in the east. Possible causes for this variation could be the climatic and edaphic gradients across the Basin and/or the spatial distribution of tree species composition. To help understand causes of this variation a new individual-based model of tropical forest growth designed to take full advantage of the forest census data available from the Amazonian Forest Inventory Network (RAINFOR has been developed. The model incorporates variations in tree size distribution, functional traits and soil physical properties and runs at the stand level with four functional traits, leaf dry mass per area (Ma, leaf nitrogen (NL and phosphorus (PL content and wood density (DW used to represent a continuum of plant strategies found in tropical forests. We first applied the model to validate canopy-level water fluxes at three Amazon eddy flux sites. For all three sites the canopy-level water fluxes were adequately simulated. We then applied the model at seven plots, where intensive measurements of carbon allocation are available. Tree-by-tree multi-annual growth rates generally agreed well with observations for small trees, but with deviations identified for large trees. At the stand-level, simulations at 40 plots were used to explore the influence of climate and soil fertility on the gross (ΠG and net (ΠN primary production rates as well as the carbon use efficiency (CU. Simulated ΠG, ΠN and CU were not associated with temperature. However all three measures of stand level productivity were positively related to annual precipitation and soil fertility.

  11. Anthropogenic landscape change promotes asymmetric dispersal and limits regional patch occupancy in a spatially structured bird population.

    Science.gov (United States)

    Pavlacky, David C; Possingham, Hugh P; Lowe, Andrew J; Prentis, Peter J; Green, David J; Goldizen, Anne W

    2012-09-01

    1. Local extinctions in habitat patches and asymmetric dispersal between patches are key processes structuring animal populations in heterogeneous environments. Effective landscape conservation requires an understanding of how habitat loss and fragmentation influence demographic processes within populations and movement between populations. 2. We used patch occupancy surveys and molecular data for a rainforest bird, the logrunner (Orthonyx temminckii), to determine (i) the effects of landscape change and patch structure on local extinction; (ii) the asymmetry of emigration and immigration rates; (iii) the relative influence of local and between-population landscapes on asymmetric emigration and immigration; and (iv) the relative contributions of habitat loss and habitat fragmentation to asymmetric emigration and immigration. 3. Whether or not a patch was occupied by logrunners was primarily determined by the isolation of that patch. After controlling for patch isolation, patch occupancy declined in landscapes experiencing high levels of rainforest loss over the last 100 years. Habitat loss and fragmentation over the last century was more important than the current pattern of patch isolation alone, which suggested that immigration from neighbouring patches was unable to prevent local extinction in highly modified landscapes. 4. We discovered that dispersal between logrunner populations is highly asymmetric. Emigration rates were 39% lower when local landscapes were fragmented, but emigration was not limited by the structure of the between-population landscapes. In contrast, immigration was 37% greater when local landscapes were fragmented and was lower when the between-population landscapes were fragmented. Rainforest fragmentation influenced asymmetric dispersal to a greater extent than did rainforest loss, and a 60% reduction in mean patch area was capable of switching a population from being a net exporter to a net importer of dispersing logrunners. 5. The

  12. A mid-Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards.

    Science.gov (United States)

    Prates, Ivan; Rivera, Danielle; Rodrigues, Miguel T; Carnaval, Ana C

    2016-10-01

    Shifts in the geographic distribution of habitats over time can promote dispersal and vicariance, thereby influencing large-scale biogeographic patterns and ecological processes. An example is that of transient corridors of suitable habitat across disjunct but ecologically similar regions, which have been associated with climate change over time. Such connections likely played a role in the assembly of tropical communities, especially within the highly diverse Amazonian and Atlantic rainforests of South America. Although these forests are presently separated by open and dry ecosystems, paleoclimatic and phylogenetic evidence suggest that they have been transiently connected in the past. However, little is known about the timing, magnitude and the distribution of former forest connections. We employ sequence data at multiple loci from three codistributed arboreal lizards (Anolis punctatus, Anolis ortonii and Polychrus marmoratus) to infer the phylogenetic relationships among Amazonian and Atlantic Forest populations and to test alternative historical demographic scenarios of colonization and vicariance using coalescent simulations and approximate Bayesian computation (ABC). Data from the better-sampled Anolis species support colonization of the Atlantic Forest from eastern Amazonia. Hierarchical ABC indicates that the three species colonized the Atlantic Forest synchronously during the mid-Pleistocene. We find support of population bottlenecks associated with founder events in the two Anolis, but not in P. marmoratus, consistently with their distinct ecological tolerances. Our findings support that climatic fluctuations provided key opportunities for dispersal and forest colonization in eastern South America through the cessation of environmental barriers. Evidence of species-specific histories strengthens assertions that biological attributes play a role in responses to shared environmental change.

  13. A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus

    DEFF Research Database (Denmark)

    Nübel, Ulrich; Dordel, Janina; Kurt, Kevin;

    2010-01-01

    at 269 genetic loci (118,804 basepairs) within an international isolate collection, we ascertained extremely low diversity among European ST225 isolates, indicating that a recent population bottleneck had preceded the expansion of this clone. In contrast, US isolates were more divergent, suggesting......Due to the lack of fossil evidence, the timescales of bacterial evolution are largely unknown. The speed with which genetic change accumulates in populations of pathogenic bacteria, however, is a key parameter that is crucial for understanding the emergence of traits such as increased virulence...... they represent the ancestral population. While diversity was low, however, our results demonstrate that the short-term evolutionary rate in this natural population of MRSA resulted in the accumulation of measurable DNA sequence variation within two decades, which we could exploit to reconstruct its recent...

  14. Spatial analysis of wing geometry in dengue vector mosquito, Aedes aegypti (L. (Diptera: Culicidae, populations in Metropolitan Manila, Philippines

    Directory of Open Access Journals (Sweden)

    Thaddeus M Carvajal

    2016-01-01

    Interpretation & conclusion: The newly modified wing preparation procedure was able to capture a complete coverage of the wings of Ae. aegypti, thus providing a stronger separation power for very close populations in an urban area. It is also noteworthy that the results of IBD and SA supported the findings of GM in the population structuring of male and female Ae. aegypti. The outcome of the study increases our understanding of the vector, which would be useful in developing effective control strategies.

  15. POPULATION STRUCTURE AND SPATIAL DISTRIBUTION OF Bauhinia cheilantha (Bong. Steud. IN TWO FRAGMENTS AT DIFFERENT REGENERATION STAGES IN THE CAATINGA, IN SERGIPE, BRAZIL

    Directory of Open Access Journals (Sweden)

    Ana Cecília da Cruz Silva

    2015-06-01

    Full Text Available ABSTRACTThis study aimed to analyze the vertical and diameter structure and the spatial distribution pattern of Bauhinia cheilantha in two Caatinga fragments in Sergipe, Brazil, at different regeneration stages. Thirty plots were demarcated in area I (Canindé de São Francisco and Poço Redondo, which has vegetation regeneration, and 25 plots in area II (Porto da Folha with preserved vegetation, both having 400 m2. All B. cheilanthaindividuals had their height and circumference (circumference at breast height > 6 cm measured. Possible differences in height and diameter at breast height were tested in the two populations by using Student’s T-test. The distribution pattern of species was calculated through Payandeh’s index. We sampled 154 B. cheilantha individuals, equivalent to 33.3% of the plots in area I and in 1,027 individuals in area II, totaling 100% frequency. Height and the diameter of the two populations were statistically different, where AI achieved all values lower than AII. The spatial distribution pattern of B. cheilantha found in both areas was aggregate, with values of 11.85 and 9.00, respectively. Thus, it became clear that the population in AII is at a more advanced successional status than AI, due to its longer conservation time.

  16. Application of spatial analysis technology to the planning of access to oral health care for at-risk populations in Australian capital cities.

    Science.gov (United States)

    Almado, Haidar; Kruger, Estie; Tennant, Marc

    2015-01-01

    Australians are one of the healthiest populations in the world but there is strong evidence that health inequalities exist. Australia has 23.1 million people spread very unevenly over -20 million square kilometres. This study aimed to apply spatial analysis tools to measure the spatial distribution of fixed adult public dental clinics in the eight metropolitan capital cities of Australia. All population data for metropolitan areas of the eight capital cities were integrated with socioeconomic data and health-service locations, using Geographic Information Systems, and then analysed. The adult population was divided into three subgroups according to age, consisting of 15-year-olds and over (n = 7.2 million), retirees 65 years and over (n = 1.2 million), and the elderly, who were 85 years and over (n = 0.15 million). It was evident that the States fell into two groups; Tasmania, Northern Territory, Australian Capital Territory and Western Australia in one cluster, and Victoria, New South Wales, Queensland and South Australia in the other. In the first group, the average proportion of the population of low socioeconomic status living in metropolitan areas within 2.5 km of a government dental clinic is 13%, while for the other cluster, it is 42%. The clustering remains true at 5 km from the clinics. The first cluster finds that almost half (46%) of the poorest 30% of the population live within 5km of a government dental clinic. The other cluster of States finds nearly double that proportion (86%). The results from this study indicated that access distances to government dental services differ substantially in metropolitan areas of the major Australian capital cities.

  17. Population genetic structure of Aedes (Stegomyia aegypti (L. at a micro-spatial scale in Thailand: implications for a dengue suppression strategy.

    Directory of Open Access Journals (Sweden)

    Phanthip Olanratmanee

    Full Text Available BACKGROUND: The genetic population structure of Aedes (Stegomyia aegypti (L., the main vector of dengue virus, is being investigated in areas where a novel dengue suppression program is to be implemented. The aim of the program is to release and establish mosquito populations with impaired virus transmission capabilities. To model effects of the release and devise protocols for its implementation, information about the genetic structure of populations at a range of spatial scales is required. METHODOLOGY/PRINCIPAL FINDINGS: This study investigates a potential release site in the Hua Sam Rong Subdistrict of Plaeng Yao District, Chachoengsao Province, in eastern Thailand which comprises a complex of five villages within a 10 km radius. Aedes aegypti resting indoors was sampled at four different times of year from houses within the five villages. Genetic markers were used to screen the mosquitoes: two Exon Primed Intron Crossing (EPIC markers and five microsatellite markers. The raw allele size was determined using several statistical software packages to analyze the population structure of the mosquito. Estimates of effective population size for each village were low, but there was no evidence of genetic isolation by geographic distance. CONCLUSIONS: The presence of temporary genetic structure is possibly caused by genetic drift due to large contributions of adults from a few breeding containers. This suggests that the introduction of mosquitoes into an area needs to proceed through multiple releases and targeting of sites where mosquitoes are emerging in large numbers.

  18. Wide variation in spatial genetic structure between natural populations of the European beech (Fagus sylvatica) and its implications for SGS comparability.

    Science.gov (United States)

    Jump, A S; Rico, L; Coll, M; Peñuelas, J

    2012-06-01

    Identification and quantification of spatial genetic structure (SGS) within populations remains a central element of understanding population structure at the local scale. Understanding such structure can inform on aspects of the species' biology, such as establishment patterns and gene dispersal distance, in addition to sampling design for genetic resource management and conservation. However, recent work has identified that variation in factors such as sampling methodology, population characteristics and marker system can all lead to significant variation in SGS estimates. Consequently, the extent to which estimates of SGS can be relied on to inform on the biology of a species or differentiate between experimental treatments is open to doubt. Following on from a recent report of unusually extensive SGS when assessed using amplified fragment length polymorphisms in the tree Fagus sylvatica, we explored whether this marker system led to similarly high estimates of SGS extent in other apparently similar populations of this species. In the three populations assessed, SGS extent was even stronger than this previously reported maximum, extending up to 360 m, an increase in up to 800% in comparison with the generally accepted maximum of 30-40 m based on the literature. Within this species, wide variation in SGS estimates exists, whether quantified as SGS intensity, extent or the Sp parameter. Consequently, we argue that greater standardization should be applied in sample design and SGS estimation and highlight five steps that can be taken to maximize the comparability between SGS estimates.

  19. Geostatistical analysis of disease data: accounting for spatial support and population density in the isopleth mapping of cancer mortality risk using area-to-point Poisson kriging

    Directory of Open Access Journals (Sweden)

    Goovaerts Pierre

    2006-11-01

    Full Text Available Abstract Background Geostatistical techniques that account for spatially varying population sizes and spatial patterns in the filtering of choropleth maps of cancer mortality were recently developed. Their implementation was facilitated by the initial assumption that all geographical units are the same size and shape, which allowed the use of geographic centroids in semivariogram estimation and kriging. Another implicit assumption was that the population at risk is uniformly distributed within each unit. This paper presents a generalization of Poisson kriging whereby the size and shape of administrative units, as well as the population density, is incorporated into the filtering of noisy mortality rates and the creation of isopleth risk maps. An innovative procedure to infer the point-support semivariogram of the risk from aggregated rates (i.e. areal data is also proposed. Results The novel methodology is applied to age-adjusted lung and cervix cancer mortality rates recorded for white females in two contrasted county geographies: 1 state of Indiana that consists of 92 counties of fairly similar size and shape, and 2 four states in the Western US (Arizona, California, Nevada and Utah forming a set of 118 counties that are vastly different geographical units. Area-to-point (ATP Poisson kriging produces risk surfaces that are less smooth than the maps created by a naïve point kriging of empirical Bayesian smoothed rates. The coherence constraint of ATP kriging also ensures that the population-weighted average of risk estimates within each geographical unit equals the areal data for this unit. Simulation studies showed that the new approach yields more accurate predictions and confidence intervals than point kriging of areal data where all counties are simply collapsed into their respective polygon centroids. Its benefit over point kriging increases as the county geography becomes more heterogeneous. Conclusion A major limitation of choropleth

  20. Spatial and temporal variation in population dynamics of Andean frogs: Effects of forest disturbance and evidence for declines

    Directory of Open Access Journals (Sweden)

    Esther M. Cole

    2014-08-01

    Full Text Available Biodiversity loss is a global phenomenon that can result in the collapse of food webs and critical ecosystem services. Amphibian population decline over the last century is a notable case of species loss because amphibians survived the last four major extinction events in global history, their current rate of extinction is unprecedented, and their rate of extinction is greater than that for most other taxonomic groups. Despite the severity of this conservation problem and its relevance to the study of global biodiversity loss, major knowledge gaps remain for many of the most threatened species and regions in the world. Rigorous estimates of population parameters are lacking for many amphibian species in the Neotropics. The goal of our study was to determine how the demography of seven species of the genus Pristimantis varied over time and space in two cloud forests in the Ecuadorian Andes. We completed a long term capture–mark–recapture study to estimate abundance, survival, and population growth rates in two cloud forests in the Ecuadorian Andes; from 2002 to 2009 at Yanayacu in the Eastern Cordillera and from 2002 to 2003 at Cashca Totoras in the Western Cordillera. Our results showed seasonal and annual variation in population parameters by species and sex. P. bicantus experienced significant reductions in abundance over the course of our study. Abundance, apparent survival, and population growth rates were lower in disturbed than in primary or mature secondary forest. The results of our study raise concerns for the population status of understudied amphibian groups and provide insights into the population dynamics of Neotropical amphibians.

  1. Genetic Geostatistical Framework for Spatial Analysis of Fine-Scale Genetic Heterogeneity in Modern Populations: Results from the KORA Study

    Directory of Open Access Journals (Sweden)

    A. N. Diaz-Lacava

    2015-01-01

    Full Text Available Aiming to investigate fine-scale patterns of genetic heterogeneity in modern humans from a geographic perspective, a genetic geostatistical approach framed within a geographic information system is presented. A sample collected for prospective studies in a small area of southern Germany was analyzed. None indication of genetic heterogeneity was detected in previous analysis. Socio-demographic and genotypic data of German citizens were analyzed (212 SNPs; n=728. Genetic heterogeneity was evaluated with observed heterozygosity (HO. Best-fitting spatial autoregressive models were identified, using socio-demographic variables as covariates. Spatial analysis included surface interpolation and geostatistics of observed and predicted patterns. Prediction accuracy was quantified. Spatial autocorrelation was detected for both socio-demographic and genetic variables. Augsburg City and eastern suburban areas showed higher HO values. The selected model gave best predictions in suburban areas. Fine-scale patterns of genetic heterogeneity were observed. In accordance to literature, more urbanized areas showed higher levels of admixture. This approach showed efficacy for detecting and analyzing subtle patterns of genetic heterogeneity within small areas. It is scalable in number of loci, even up to whole-genome analysis. It may be suggested that this approach may be applicable to investigate the underlying genetic history that is, at least partially, embedded in geographic data.

  2. Determinants of beta diversity: the relative importance of environmental and spatial processes in structuring phytoplankton communities in an Amazonian floodplain Determinantes da diversidade beta: a importância relativa de processos ambientais e espaciais na estrutura de comunidades fitoplanctônicas de uma planície de inundação amazônica

    Directory of Open Access Journals (Sweden)

    Ina de Souza Nogueira

    2010-09-01

    Full Text Available AIM: Beta diversity is defined as the change in species composition along environmental gradients, and in the present study, we investigated the influence of local (i.e., environmental and regional (i.e., dispersal factors in community structure. The aims of this study were to evaluate the beta diversity of phytoplankton communities in the Curuaí floodplain and to determine the relative importance of environmental and spatial processes in shaping phytoplankton community structure; METHOD: The phytoplankton communities were sampled in 16 lakes of the Curuaí floodplain (Amazon Basin during high-water periods in 2002 and 2003. We used partial redundancy analysis (pRDA to evaluate the pure effect of environmental (six variables and spatial (spatial filter variability on phytoplankton community composition; RESULTS: There were 156 taxa recorded in the two study years, including 122 algae species in 2002 and 66 algae species in 2003. The beta diversity that we measured (βSIM index was 0.889 in 2002 and 0.789 in 2003. The partitioning variation demonstrated that the majority of variation in phytoplankton community structure was not significantly explained by pure environmental and pure spatial components. However, environmental variables presented a larger coefficient of determination than the spatial variable; CONCLUSION: Other factors than those we measured in this study, such as local variables (i.e., biotic interactions, hydrology, etc. and stochastic events, affected the absence of significant results in our data. Therefore, we suggest that additional variables, such as biological interactions and other local factors, should be considered in this type of analysis to increase its explanatory power for understanding the variation of diversity in these communities.OBJETIVO: A diversidade beta é definida como as mudanças na composição de espécies ao longo de um gradiente ambiental, e atualmente, ecólogos têm investigado a influência de

  3. Spatial genetic structure of Long-tailed Ducks (Clangula hyemalis) among Alaskan, Canadian, and Russian breeding populations

    Science.gov (United States)

    Wilson, Robert E.; Gust, J R; Petersen, Margaret; Talbot, Sandra

    2016-01-01

    Arctic ecosystems are changing at an unprecedented rate. How Arctic species are able to respond to such environmental change is partially dependent on the connections between local and broadly distributed populations. For species like the Long-tailed Duck (Clangula hyemalis), we have limited telemetry and band-recovery information from which to infer population structure and migratory connectivity; however, genetic analyses can offer additional insights. To examine population structure in the Long-tailed Duck, we characterized variation at mtDNA control region and microsatellite loci among four breeding areas in Alaska, Canada, and Russia. We observed significant differences in the variance of mtDNA haplotype frequencies between the Yukon-Kuskokwim Delta (YKD) and the three Arctic locations (Arctic Coastal Plain in Alaska, eastern Siberia, and central Canadian Arctic). However, like most sea duck genetic assessments, our study found no evidence of population structure based on autosomal microsatellite loci. Long-tailed Ducks use multiple wintering areas where pair formation occurs with some populations using both the Pacific and Atlantic Oceans. This situation provides a greater opportunity for admixture across breeding locales, which would likely homogenize the nuclear genome even in the presence of female philopatry. The observed mtDNA differentiation was largely due to the presence of two divergent clades: (A) a clade showing signs of admixture among all breeding locales and (B) a clade primarily composed of YKD samples. We hypothesize that the pattern of mtDNA differentiation reflects some degree of philopatry to the YKD and isolation of two refugial populations with subsequent expansion and admixture. We recommend additional genetic assessments throughout the circumpolar range of Long-tailed Ducks to further quantify aspects of genetic diversity and migratory connectivity in this species.

  4. Variation of biometric parameters and C, N, and P concentrations of Oryza glumaepatula at different depths of an Amazonian lake impacted by bauxite tailings (Lake Batata, Pará, Brazil).

    Science.gov (United States)

    Enrich-Prast, A; Esteves, F A; Breves, A R

    2002-02-01

    Lake Batata is a typical Amazonian clear water lake which has undergone anthropogenic impacts. Thirty percent of its total area has been covered with bauxite tailings. Thus, it is possible to distinguish two areas in this ecosystem: the impacted and the natural. The goal of this research was to study C, N, and P content variation and the values of biomass, length, density, and culm diameter of Oryza glumaepatula at different depths in the natural and impacted areas of Lake Batata. The results obtained in this research suggest that the availability of P and N, in both water and sediment, is lower at the shallow site when compared to the deeper sites. On the other hand, C concentrations decreased as P and N concentrations increased. This may be explained by the structural function of C in aquatic macrophytes. At shallower sites, due to the reduced water column, individuals invest in supporting structures that display high C concentrations. The higher density and biomass of O. glumaepatula at the intermediate site indicate that this area presents the best conditions for germination and establishment of individuals of this species. The chemical composition and biometric parameters of O. glumaepatula have shown that this population has higher spatial variation in the natural area. In the impacted area, the absence of significant variations in N and P concentrations in O. glumaepatula among the three sampled sites promotes higher homogeneity in the stands. The high C:P and N:P ratios indicate that, in the impacted area, P is more limiting to the development of O. glumaepatula than it is in the natural area. The reduced values of biomass and density of O. glumaepatula in the impacted area suggest that the bauxite tailings limit the development of this population.

  5. The spatial genetic differentiation of the legume pod borer, Maruca vitrata F. (Lepidoptera: Pyralidae) populations in West Africa

    Science.gov (United States)

    The legume pod borer, Maruca vitrata, is an endemic insect pest that causes significant yield loss to the cowpea crop in West Africa, and contributes to food shortages and malnutrition in native human populations. The genetic structure of Maruca vitrata was investigated among five sites from Burkin...

  6. Temporal and Spatial Patterns of Airborne Contaminants Relative to Amphibian Population in Sequoia and Kings Canyon National Parks, California

    Science.gov (United States)

    Airborne agricultural pesticides are being transported many tens of kilometers to remote locations in mountain areas, and they have been implicated as a cause for recent, dramatic population declines of several amphibian species in such areas. The strongest case is for the mount...

  7. The Gaia-ESO Survey: Discovery of a spatially extended low-mass population in the Vela OB2 association

    CERN Document Server

    Sacco, G G; Randich, S; Franciosini, E; Jackson, R J; Cottaar, M; Spina, L; Palla, F; Mapelli, M; Alfaro, E J; Bonito, R; Damiani, F; Frasca, A; Klutsch, A; Lanzafame, A; Bayo, A; Barrado, D; Jimenez-Esteban, F; Gilmore, G; Micela, G; Vallenari, A; Prieto, C Allende; Flaccomio, E; Carraro, G; Costado, M T; Jofre, P; Lardo, C; Magrini, L; Morbidelli, L; Prisinzano, L; Sbordone, L

    2015-01-01

    The nearby (distance~350-400 pc), rich Vela OB2 association, includes $\\gamma^2$ Velorum, one of the most massive binaries in the solar neighbourhood and an excellent laboratory for investigating the formation and early evolution of young clusters. Recent Gaia-ESO survey observations have led to the discovery of two kinematically distinct populations in the young (10-15 Myr) cluster immediately surrounding $\\gamma^2$ Velorum. Here we analyse the results of Gaia-ESO survey observations of NGC 2547, a 35 Myr cluster located two degrees south of $\\gamma^2$ Velorum. The radial velocity distribution of lithium-rich pre-main sequence stars shows a secondary population that is kinematically distinct from and younger than NGC 2547. The radial velocities, lithium absorption lines, and the positions in a colour-magnitude diagram of this secondary population are consistent with those of one of the components discovered around $\\gamma^2$ Velorum. This result shows that there is a young, low-mass stellar population spread...

  8. Spatial variations in estimated chronic exposure to traffic-related air pollution in working populations: A simulation

    Directory of Open Access Journals (Sweden)

    Cloutier-Fisher Denise

    2008-07-01

    Full Text Available Abstract Background Chronic exposure to traffic-related air pollution is associated with a variety of health impacts in adults and recent studies show that exposure varies spatially, with some residents in a community more exposed than others. A spatial exposure simulation model (SESM which incorporates six microenvironments (home indoor, work indoor, other indoor, outdoor, in-vehicle to work and in-vehicle other is described and used to explore spatial variability in estimates of exposure to traffic-related nitrogen dioxide (not including indoor sources for working people. The study models spatial variability in estimated exposure aggregated at the census tracts level for 382 census tracts in the Greater Vancouver Regional District of British Columbia, Canada. Summary statistics relating to the distributions of the estimated exposures are compared visually through mapping. Observed variations are explored through analyses of model inputs. Results Two sources of spatial variability in exposure to traffic-related nitrogen dioxide were identified. Median estimates of total exposure ranged from 8 μg/m3 to 35 μg/m3 of annual average hourly NO2 for workers in different census tracts in the study area. Exposure estimates are highest where ambient pollution levels are highest. This reflects the regional gradient of pollution in the study area and the relatively high percentage of time spent at home locations. However, for workers within the same census tract, variations were observed in the partial exposure estimates associated with time spent outside the residential census tract. Simulation modeling shows that some workers may have exposures 1.3 times higher than other workers residing in the same census tract because of time spent away from the residential census tract, and that time spent in work census tracts contributes most to the differences in exposure. Exposure estimates associated with the activity of commuting by vehicle to work were

  9. 无锡就业人口时空格局演变之测度%MEASURE OF SPATIAL AND TEMPORAL EVOLUTION OF EMPLOYED POPULATION IN WUXI

    Institute of Scientific and Technical Information of China (English)

    牟宇峰; 孙伟; 袁丰; 肖琛

    2014-01-01

    就业变动与产业发展之间存在着不可分割的天然联系,研究无锡就业人口时空格局演变不仅可以间接揭示区域产业发展和布局状况,也可为引导人口和产业协调布局提供依据.为此,选择无锡为研究区域,应用1985~2010年统计年鉴数据与普查数据,通过空间基尼系数和空间自相关等方法,从整体和局部两个层次,梳理就业人口时空格局的演变过程并总结特征.结果表明:(1)就业人口总量增长、具有圈层结构和集聚特性,并表现出郊区化趋势;(2)第二产业就业人口郊区化特征明显,由集聚变为分散.轻工业、劳动密集型行业和高污染行业就业人口向城市北部移动,重工业、技术密集型行业和低污染行业就业人口向城市南部变动;(3)第三产业就业人口一方面总体表现为集聚态势,另一方面,表现为由中心向四周逐渐缓慢扩散的特征.%There is an indivisible relationship between employed pattern and industry development.Evolution of industrial structure and layout is always accompanied by employed population migration phenomenon between regions,between urban and rural,between industries.So it is important to study the evolution process of employed population,and to reveal the law and summarize the characteristics in Wuxi.Moreover,it can reveal the situation of regional industrial development and urban function division from another angle.The purpose of this paper is not only to guide and optimize the rational distribution of population and industry,but also to provide theoretical significance about achieving the coordinated development of population,economy,and society.Thus,this paper took Wuxi as the study area,and used the published data from Statistical Yearbook and National Economic Census from 1985 to 2010.Through utilizing some methods including spatial Gini coefficient and spatial autocorrelation,we analyzed the evolution process and summarized the characteristics of

  10. Estimating Population Size for Capercaillie (Tetrao urogallus L. with Spatial Capture-Recapture Models Based on Genotypes from One Field Sample.

    Directory of Open Access Journals (Sweden)

    Pierre Mollet

    Full Text Available We conducted a survey of an endangered and cryptic forest grouse, the capercaillie Tetrao urogallus, based on droppings collected on two sampling occasions in eight forest fragments in central Switzerland in early spring 2009. We used genetic analyses to sex and individually identify birds. We estimated sex-dependent detection probabilities and population size using a modern spatial capture-recapture (SCR model for the data from pooled surveys. A total of 127 capercaillie genotypes were identified (77 males, 46 females, and 4 of unknown sex. The SCR model yielded a total population size estimate (posterior mean of 137.3 capercaillies (posterior sd 4.2, 95% CRI 130-147. The observed sex ratio was skewed towards males (0.63. The posterior mean of the sex ratio under the SCR model was 0.58 (posterior sd 0.02, 95% CRI 0.54-0.61, suggesting a male-biased sex ratio in our study area. A subsampling simulation study indicated that a reduced sampling effort representing 75% of the actual detections would still yield practically acceptable estimates of total size and sex ratio in our population. Hence, field work and financial effort could be reduced without compromising accuracy when the SCR model is used to estimate key population parameters of cryptic species.

  11. Estimating population size for Capercaillie (Tetrao urogallus L.) with spatial capture-recapture models based on genotypes from one field sample

    Science.gov (United States)

    Mollet, Pierre; Kery, Marc; Gardner, Beth; Pasinelli, Gilberto; Royle, Andy

    2015-01-01

    We conducted a survey of an endangered and cryptic forest grouse, the capercaillie Tetrao urogallus, based on droppings collected on two sampling occasions in eight forest fragments in central Switzerland in early spring 2009. We used genetic analyses to sex and individually identify birds. We estimated sex-dependent detection probabilities and population size using a modern spatial capture-recapture (SCR) model for the data from pooled surveys. A total of 127 capercaillie genotypes were identified (77 males, 46 females, and 4 of unknown sex). The SCR model yielded atotal population size estimate (posterior mean) of 137.3 capercaillies (posterior sd 4.2, 95% CRI 130–147). The observed sex ratio was skewed towards males (0.63). The posterior mean of the sex ratio under the SCR model was 0.58 (posterior sd 0.02, 95% CRI 0.54–0.61), suggesting a male-biased sex ratio in our study area. A subsampling simulation study indicated that a reduced sampling effort representing 75% of the actual detections would still yield practically acceptable estimates of total size and sex ratio in our population. Hence, field work and financial effort could be reduced without compromising accuracy when the SCR model is used to estimate key population parameters of cryptic species.

  12. Asymmetric dispersal and colonization success of Amazonian plant-ants queens.

    Directory of Open Access Journals (Sweden)

    Emilio M Bruna

    Full Text Available BACKGROUND: The dispersal ability of queens is central to understanding ant life-history evolution, and plays a fundamental role in ant population and community dynamics, the maintenance of genetic diversity, and the spread of invasive ants. In tropical ecosystems, species from over 40 genera of ants establish colonies in the stems, hollow thorns, or leaf pouches of specialized plants. However, little is known about the relative dispersal ability of queens competing for access to the same host plants. METHODOLOGY/PRINCIPAL FINDINGS: We used empirical data and inverse modeling--a technique developed by plant ecologists to model seed dispersal--to quantify and compare the dispersal kernels of queens from three Amazonian ant species that compete for access to host-plants. We found that the modal colonization distance of queens varied 8-fold, with the generalist ant species (Crematogaster laevis having a greater modal distance than two specialists (Pheidole minutula, Azteca sp. that use the same host-plants. However, our results also suggest that queens of Azteca sp. have maximal distances that are four-sixteen times greater than those of its competitors. CONCLUSIONS/SIGNIFICANCE: We found large differences between ant species in both the modal and maximal distance ant queens disperse to find vacant seedlings used to found new colonies. These differences could result from interspecific differences in queen body size, and hence wing musculature, or because queens differ in their ability to identify potential host plants while in flight. Our results provide support for one of the necessary conditions underlying several of the hypothesized mechanisms promoting coexistence in tropical plant-ants. They also suggest that for some ant species limited dispersal capability could pose a significant barrier to the rescue of populations in isolated forest fragments. Finally, we demonstrate that inverse models parameterized with field data are an excellent means

  13. A Miocene hyperdiverse crocodylian community reveals peculiar trophic dynamics in proto-Amazonian mega-wetlands

    Science.gov (United States)

    Salas-Gismondi, Rodolfo; Flynn, John J.; Baby, Patrice; Tejada-Lara, Julia V.; Wesselingh, Frank P.; Antoine, Pierre-Olivier

    2015-01-01

    Amazonia contains one of the world's richest biotas, but origins of this diversity remain obscure. Onset of the Amazon River drainage at approximately 10.5 Ma represented a major shift in Neotropical ecosystems, and proto-Amazonian biotas just prior to this pivotal episode are integral to understanding origins of Amazonian biodiversity, yet vertebrate fossil evidence is extraordinarily rare. Two new species-rich bonebeds from late Middle Miocene proto-Amazonian deposits of northeastern Peru document the same hyperdiverse assemblage of seven co-occurring crocodylian species. Besides the large-bodied Purussaurus and Mourasuchus, all other crocodylians are new taxa, including a stem caiman—Gnatusuchus pebasensis—bearing a massive shovel-shaped mandible, procumbent anterior and globular posterior teeth, and a mammal-like diastema. This unusual species is an extreme exemplar of a radiation of small caimans with crushing dentitions recording peculiar feeding strategies correlated with a peak in proto-Amazonian molluscan diversity and abundance. These faunas evolved within dysoxic marshes and swamps of the long-lived Pebas Mega-Wetland System and declined with inception of the transcontinental Amazon drainage, favouring diversification of longirostrine crocodylians and more modern generalist-feeding caimans. The rise and demise of distinctive, highly productive aquatic ecosystems substantially influenced evolution of Amazonian biodiversity hotspots of crocodylians and other organisms throughout the Neogene. PMID:25716785

  14. Spatial and Temporal Population Genetics at Deep-Sea Hydrothermal Vents Along the East Pacific Rise and Galapagos Rift

    Science.gov (United States)

    2008-09-01

    tradeoffs (Strathmann et al. 2002, Levin 2006, Teske et al. 2007). With rare exceptions (e.g., Annis 2005), larvae are difficult to locate and track...Currents and environmental discontinuities ultimately have more of a structuring effect on regional lineages ( Teske et al. 2007). Larval behavior...Swearer SE, Caselle JE, Lea DW, Warner RR (1999) Larval retention and recruitment in an island population of coral reef fish. Nature, 402, 799-802. Teske

  15. Modeling the spatial and temporal population dynamics of the copepod Centropages typicus in the northwestern Mediterranean Sea during the year 2001 using a 3D ecosystem model

    Science.gov (United States)

    Carlotti, F.; Eisenhauer, L.; Campbell, R.; Diaz, F.

    2014-07-01

    The spatio-temporal dynamics of a simulated Centropages typicus (Kröyer) population during the year 2001 at the regional scale of the northwestern Mediterranean Sea are addressed using a 3D coupled physical-biogeochemical model. The setup of the coupled biological model comprises a pelagic plankton ecosystem model and a stage-structured population model forced by the 3D velocity and temperature fields provided by an eddy-resolving regional circulation model. The population model for C. typicus (C. t. below) represents demographic processes through five groups of developmental stages, which depend on underlying individual growth and development processes and are forced by both biotic (prey and predator fields) and abiotic (temperature, advection) factors from the coupled physical-biogeochemical model. The objective is to characterize C. t. ontogenic habitats driven by physical and trophic processes. The annual dynamics are presented for two of the main oceanographic stations in the Gulf of Lions, which are representative of shelf and open sea conditions, while the spatial distributions over the whole area are presented for three dates during the year, in early and late spring and in winter. The simulated spatial patterns of C. t. developmental stages are closely related to mesoscale hydrodynamic features and circulation patterns. The seasonal and spatial distributions on the Gulf of Lions shelf depend on the seasonal interplay between the Rhône river plume, the mesoscale eddies on the shelf and the Northern Current acting as either as a dynamic barrier between the shelf and the open sea or allowing cross-shelf exchanges. In the central gyre of the northwestern Mediterranean Sea, the patchiness of plankton is tightly linked to mesoscale frontal systems, surface eddies and filaments and deep gradients. Due to its flexibility in terms of its diet, C. t. succeeds in maintaining its population in both coastal and offshore areas year round. The simulations suggest that

  16. Infection dynamics of endemic malaria in a wild bird population: parasite species-dependent drivers of spatial and temporal variation in transmission rates.

    Science.gov (United States)

    Lachish, Shelly; Knowles, Sarah C L; Alves, Ricardo; Wood, Matthew J; Sheldon, Ben C

    2011-11-01

    1. Investigating the ecological context in which host-parasite interactions occur and the roles of biotic and abiotic factors in forcing infection dynamics is essential to understanding disease transmission, spread and maintenance. 2. Despite their prominence as model host-pathogen systems, the relative influence of environmental heterogeneity and host characteristics in influencing the infection dynamics of avian blood parasites has rarely been assessed in the wild, particularly at a within-population scale. 3. We used a novel multievent modelling framework (an extension of multistate mark-recapture modelling) that allows for uncertainty in disease state, to estimate transmission parameters and assess variation in the infection dynamics of avian malaria in a large, longitudinally sampled data set of breeding blue tits infected with two divergent species of Plasmodium parasites. 4. We found striking temporal and spatial heterogeneity in the disease incidence rate and the likelihood of recovery within this single population and demonstrate marked differences in the relative influence of environmental and host factors in forcing the infection dynamics of the two Plasmodium species. 5. Proximity to a permanent water source greatly influenced the transmission rates of P. circumflexum, but not of P. relictum, suggesting that these parasites are transmitted by different vectors. 6. Host characteristics (age/sex) were found to influence infection rates but not recovery rates, and their influence on infection rates was also dependent on parasite species: P. relictum infection rates varied with host age, whilst P. circumflexum infection rates varied with host sex. 7. Our analyses reveal that transmission of endemic avian malaria is a result of complex interactions between biotic and abiotic components that can operate on small spatial scales and demonstrate that knowledge of the drivers of spatial and temporal heterogeneity in disease transmission will be

  17. Amazonian Triatomine Biodiversity and the Transmission of Chagas Disease in French Guiana: In Medio Stat Sanitas.

    Science.gov (United States)

    Péneau, Julie; Nguyen, Anne; Flores-Ferrer, Alheli; Blanchet, Denis; Gourbière, Sébastien

    2016-02-01

    The effects of biodiversity on the transmission of infectious diseases now stand as a cornerstone of many public health policies. The upper Amazonia and Guyana shield are hot-spots of biodiversity that offer genuine opportunities to explore the relationship between the risk of transmission of Chagas disease and the diversity of its triatomine vectors. Over 730 triatomines were light-trapped in four geomorphological landscapes shaping French-Guiana, and we determined their taxonomic status and infection by Trypanosoma cruzi. We used a model selection approach to unravel the spatial and temporal variations in species abundance, diversity and infection. The vector community in French-Guiana is typically made of one key species (Panstrongylus geniculatus) that is more abundant than three secondary species combined (Rhodnius pictipes, Panstrongylus lignarius and Eratyrus mucronatus), and four other species that complete the assemblage. Although the overall abundance of adult triatomines does not vary across French-Guiana, their diversity increases along a coastal-inland gradient. These variations unravelled a non-monotonic relationship between vector biodiversity and the risk of transmission of Chagas disease, so that intermediate biodiversity levels are associated with the lowest risks. We also observed biannual variations in triatomine abundance, representing the first report of a biannual pattern in the risk of Chagas disease transmission. Those variations were highly and negatively correlated with the average monthly rainfall. We discuss the implications of these patterns for the transmission of T. cruzi by assemblages of triatomine species, and for the dual challenge of controlling Amazonian vector communities that are made of both highly diverse and mostly intrusive species.

  18. Ground-Vegetation Clutter Affects Phyllostomid Bat Assemblage Structure in Lowland Amazonian Forest.

    Directory of Open Access Journals (Sweden)

    Rodrigo Marciente

    Full Text Available Vegetation clutter is a limiting factor for bats that forage near ground level, and may determine the distribution of species and guilds. However, many studies that evaluated the effects of vegetation clutter on bats have used qualitative descriptions rather than direct measurements of vegetation density. Moreover, few studies have evaluated the effect of vegetation clutter on a regional scale. Here, we evaluate the influence of the physical obstruction of vegetation on phyllostomid-bat assemblages along a 520 km transect in continuous Amazonian forest. We sampled bats using mist nets in eight localities during 80 nights (3840 net-hours and estimated the ground-vegetation density with digital photographs. The total number of species, number of animalivorous species, total number of frugivorous species, number of understory frugivorous species, and abundance of canopy frugivorous bats were negatively associated with vegetation clutter. The bat assemblages showed a nested structure in relation to degree of clutter, with animalivorous and understory frugivorous bats distributed throughout the vegetation-clutter gradient, while canopy frugivores were restricted to sites with more open vegetation. The species distribution along the gradient of vegetation clutter was not closely associated with wing morphology, but aspect ratio and wing load differed between frugivores and animalivores. Vegetation structure plays an important role in structuring assemblages of the bats at the regional scale by increasing beta diversity between sites. Differences in foraging strategy and diet of the guilds seem to have contributed more to the spatial distribution of bats than the wing characteristics of the species alone.

  19. [Spatial distribution patterns of adult population of Pseudorobitis gibbus (Coleoptera: Apionidae) in Taixing Garden, Tai'an, Shandong, China].

    Science.gov (United States)

    Li, Yan; Zheng, Fang-Qiang; Yu, Li-Ying; Qiao, Lu-Qin; Lu, Xi-Ping

    2014-01-01

    The vertical and horizontal distributions of Pseudorobitis gibbus adults on Lagerstroemia indica were analyzed by using the aggregation indices and geostatistics. The results from aggregation index methods indicated that its vertical distribution was an aggregated distribution, and the aggregation average (lambda) was above two, showing that the aggregation resulted from its bionomics and behaviors, not from the environmental factors. The results of geostatistic analysis showed that the best fitting models for the five different sampling data in June 4, June 16, June 29, July 25 and August 22 were Gaussian, Gaussian, Linear, Gaussian and Linear models, respectively, but random models in July 12 and August 7. It was concluded that the horizontal distribution of the pest was aggregated on the whole, and there existed a spatial correlation ranging from 1.68 to 9.79 m on the different dates.

  20. Socio-economic and spatial determinants of anthropogenic predation on Yellow-spotted River Turtle, Podocnemis unifilis (Testudines: Pelomedusidae, nests in the Brazilian Amazon: Implications for sustainable conservation and management

    Directory of Open Access Journals (Sweden)

    Darren Norris

    2013-10-01

    Full Text Available Human expansion has drastically affected wildlife species across Amazonian waterways and the continued increase in rural populations across Amazonia is likely to increase pressure on widely exploited chelonian species. The lack of information evaluating determinants of human consumption patterns limits the effective implementation of conservation strategies. Our objective was to determine the relative importance of social, economic, and spatial variables on human exploitation of Podocnemis unifilis Troschel, 1848 around a sustainable-use protected area in the eastern Brazilian Amazon. We conducted interviews with 51 riverine residents to evaluate attitudes towards and exploitation of P. unifilis. We used multimodel inference to evaluate 12 working hypothesis predicting social, economic, and spatial influences on the occurrence and intensity of P. unifilis egg consumption. None of the respondents reported catching and/or eating adult P. unifilis and none sold adults or eggs during the previous year. Although the majority (58.8% of respondents had eaten P. unifilis eggs during the previous year and the species was occasionally caught in fishing nets, P. unifilis was rarely cited as a liked or disliked species. Our information theoretic analysis showed that spatial hypotheses were the most strongly supported whereas social and economic hypotheses were only weakly supported in explaining if and how many P. unifilis eggs had been consumed by riverine residents during the previous year. Our findings suggest that current Amazonian development patterns may be associated with reduced consumption of adult P. unifilis, but consumption of eggs together with other indirect anthropogenic perturbations continue to threaten remaining P. unifilis populations.

  1. Spatial heterogeneity of cyanobacterial communities and genetic variation of Microcystis populations within large, shallow eutrophic lakes (Lake Taihu and Lake Chaohu, China)

    Institute of Scientific and Technical Information of China (English)

    Yuanfeng Cai; Fanxiang Kong; Limei Shi; Yang Yu

    2012-01-01

    Cyanobacteria,specifically Microcystis,usually form massive blooms in eutrophic freshwater lakes.Cyanobacterial samples were collected from eight sites of both Lake Taihu and Lake Chaohu in late summer to determine the diversity and distribution pattern of cyanobacteria and Microcystis in large,shallow,entropic lakes with significant spatial heterogeneity and long-term Microcystis bloom.Molecular methods based on denaturing gradient gel electrophoresis and clone library analysis were used.A similar heterogeneous distribution pattern of cyanobacteria in both lakes was observed.Most parts of these two lakes with high trophic level were dominated by Microcystis.However,in the regions with low trophic levels as well as low concentrations of chlorophyll a,Synechococcus occupied a considerable percentage.Different morphospecies and genotypes dominated the bloom-forming Microcystis populations in these two lakes.Microcystis viridis and Microcystis novacekii were dominant in Lake Chaohu,whereas Microcystis flos-aquae was dominant in Lake Taihu.Only 2 of thel3 Microcystis operational taxonomic units were shared between these two lakes.Analysis of molecular variance based on 16S to 23S internal transcribed spacer sequences indicated the significant genetic differentiation of Microcystis between these two lakes (Fst =0.19,p < 0.001).However,only 19.46% of the genetic variability was explained by the population variation between lakes,whereas most (80.54%) of the genetic variability occurred within the lakes.Phylogenetic analysis revealed no phylogeographic structure of Microcystis population in these two lakes,as illustrated by their cosmopolitan nature.Our results revealed that spatial heterogeneity within lakes has more impact on the cyanobacterial diversity than geographical isolation in a local scale.

  2. Deep plant-derived carbon storage in Amazonian podzols

    Directory of Open Access Journals (Sweden)

    C. R. Montes

    2010-10-01

    Full Text Available Equatorial podzols are soils characterized by thick sandy horizons overlying more clayey horizons. Organic matter produced in the topsoil is transferred in depth through the sandy horizons and accumulate at the transition, at a depth varying from 1 to more than 3 m, forming deep horizons rich in organic matter (Bh horizons. Although they cover great surfaces in the equatorial zone, these soils are still poorly known. Studying podzols from Amazonia, we found out that the deep Bh horizons in poorly drained podzol areas have a thickness higher than 1 m and store unexpected amounts of carbon. The average for the studied area was 66.7 ± 5.8 kg C m−2 for the deep Bh and 86.8 ± 7.1 kg C m−2 for the whole profile. Extrapolating to the podzol areas of the whole Amazonian Basin has been possible thanks to digital maps, giving an order of magnitude around 13.6 ± 1.1 Pg C, at least 12.3 Pg C higher than previous estimates. This assessment should be refined by additional investigations, not only in Amazonia but in all equatorial areas where podzols have been identified. Because of the lack of knowledge on the quality and behaviour of the podzol organic matter, the question of the feedback between the climate and the equatorial podzol carbon cycle is open.

  3. Oxidative mitigation of aquatic methane emissions in large Amazonian rivers.

    Science.gov (United States)

    Sawakuchi, Henrique O; Bastviken, David; Sawakuchi, André O; Ward, Nicholas D; Borges, Clovis D; Tsai, Siu M; Richey, Jeffrey E; Ballester, Maria Victoria R; Krusche, Alex V

    2016-03-01

    The flux of methane (CH4 ) from inland waters to the atmosphere has a profound impact on global atmospheric greenhouse gas (GHG) levels, and yet, strikingly little is known about the dynamics controlling sources and sinks of CH4 in the aquatic setting. Here, we examine the cycling and flux of CH4 in six large rivers in the Amazon basin, including the Amazon River. Based on stable isotopic mass balances of CH4 , inputs and outputs to the water column were estimated. We determined that ecosystem methane oxidation (MOX) reduced the diffusive flux of CH4 by approximately 28-96% and varied depending on hydrologic regime and general geochemical characteristics of tributaries of the Amazon River. For example, the relative amount of MOX was maximal during high water in black and white water rivers and minimal in clear water rivers during low water. The abundance of genetic markers for methane-oxidizing bacteria (pmoA) was positively correlated with enhanced signals of oxidation, providing independent support for the detected MOX patterns. The results indicate that MOX in large Amazonian rivers can consume from 0.45 to 2.07 Tg CH4 yr(-1) , representing up to 7% of the estimated global soil sink. Nevertheless, climate change and changes in hydrology, for example, due to construction of dams, can alter this balance, influencing CH4 emissions to atmosphere.

  4. The Sound-Symbolic Expression of Animacy in Amazonian Ecuador

    Directory of Open Access Journals (Sweden)

    Janis B. Nuckolls

    2010-03-01

    Full Text Available Several anthropologists of Amazonian societies in Ecuador have claimed that for Achuar [1] and Quichua speaking Runa [2-4] there is no fundamental distinction between humans on the one hand, and plants and animals on the other. A related observation is that Runa and Achuar people share an animistic cosmology whereby animals, plants, and even seemingly inert entities such as rocks and stones are believed to have a life force or essence with a subjectivity that can be expressed. This paper will focus on Quichua speaking Runa to seek linguistic evidence for animacy by examining the sound-symbolic properties of a class of expressions called ideophones. I argue that structural features of ideophones such as canonical length and diversity of sound segments as well as type of sound segments, help express the animism of the Runa lifeworld. Moreover, although these features are not indicative of any essential distinctions between plants and animals, they may be indicative of a scalar view of animacy, along the lines suggested by Descola who first proposed a continuum or ‘ladder of animacy’ for the Achuar [1, pp. 321-326]. Ideophones, then, may be understood as one set of linguistic tools for coming to terms with the diversity of their ecological setting, a setting which spans highly animate humans and animals, through less animate plants, trees, and rocks.

  5. Evidence for Middle Amazonian catastrophic flooding and glaciation on Mars

    Science.gov (United States)

    Rodríguez, J. Alexis P.; Gulick, Virginia C.; Baker, Victor R.; Platz, Thomas; Fairén, Alberto G.; Miyamoto, Hideaki; Kargel, Jeffrey S.; Rice, James W.; Glines, Natalie

    2014-11-01

    Early geologic investigations of Mars revealed some of the largest channels in the Solar System (outflow channels), which appear to have mostly developed ∼3 byr ago. These channels have been the subject of much scientific inquiry since the 1970s and proposed formative processes included surface erosion by catastrophic floods, glaciers, debris flows and lava flows. Based on the analysis of newly acquired Mars Reconnaissance Orbiter (MRO) Context (CTX, 5.15-5.91 m/pixel) and High Resolution Imaging Science Experiment (HiRISE, 25-50 cm/pixel) image data, we have identified a few locations contained within relatively narrow canyons of the southern circum-Chryse outflow channels that retain well-preserved decameter/hectometer-scale landform assemblages. These terrains include landforms consistent in shape, dimension and overall assemblage to those produced by catastrophic floods, and at one location, to glacial morphologies. Impact crater statistics for four of these surfaces, located within upstream, midstream and downstream outflow channel surfaces, yield an age estimate of ∼600 myr. This suggests that the southern circum-Chryse outflow channels were locally resurfaced by some of the most recent catastrophic floods on the planet, and that these floods coexisted within regional glacier environments as recently as during the Middle Amazonian.

  6. Mosquitoes of eastern Amazonian Ecuador: biodiversity, bionomics and barcodes

    Directory of Open Access Journals (Sweden)

    Yvonne-Marie Linton

    2013-01-01

    Full Text Available Two snapshot surveys to establish the diversity and ecological preferences of mosquitoes (Diptera: Culicidae in the terra firme primary rain forest surrounding the Tiputini Biodiversity Station in the UNESCO Yasuní Biosphere Reserve of eastern Amazonian Ecuador were carried out in November 1998 and May 1999. The mosquito fauna of this region is poorly known; the focus of this study was to obtain high quality link-reared specimens that could be used to unequivocally confirm species level diversity through integrated systematic study of all life stages and DNA sequences. A total of 2,284 specimens were preserved; 1,671 specimens were link-reared with associated immature exuviae, all but 108 of which are slide mounted. This study identified 68 unique taxa belonging to 17 genera and 27 subgenera. Of these, 12 are new to science and 37 comprise new country records. DNA barcodes [658-bp of the mtDNA cytochrome c oxidase ( COI I gene] are presented for 58 individuals representing 20 species and nine genera. DNA barcoding proved useful in uncovering and confirming new species and we advocate an integrated systematics approach to biodiversity studies in future. Associated bionomics of all species collected are discussed. An updated systematic checklist of the mosquitoes of Ecuador (n = 179 is presented for the first time in 60 years.

  7. Branchfall dominates annual carbon flux across lowland Amazonian forests

    Science.gov (United States)

    Marvin, David C.; Asner, Gregory P.

    2016-09-01

    Tropical forests play an important role in the global carbon cycle, but knowledge of interannual variation in the total tropical carbon flux and constituent carbon pools is highly uncertain. One such pool, branchfall, is an ecologically important dynamic with links to nutrient cycling, forest productivity, and drought. Identifying and quantifying branchfall over large areas would reveal the role of branchfall in carbon and nutrient cycling. Using data from repeat airborne light detection and ranging campaigns across a wide array of lowland Amazonian forest landscapes totaling nearly 100 000 ha, we find that upper canopy gaps—driven by branchfall—are pervasive features of every landscape studied, and are seven times more frequent than full tree mortality. Moreover, branchfall comprises a major carbon source on a landscape basis, exceeding that of tree mortality by 21%. On a per hectare basis, branchfall and tree mortality result in 0.65 and 0.72 Mg C ha-1 yr-1 gross source of carbon to the atmosphere, respectively. Reducing uncertainties in annual gross rates of tropical forest carbon flux, for example by incorporating large-scale branchfall dynamics, is crucial for effective policies that foster conservation and restoration of tropical forests. Additionally, large-scale branchfall mapping offers ecologists a new dimension of disturbance monitoring and potential new insights into ecosystem structure and function.

  8. Poor prospects for avian biodiversity in Amazonian oil palm.

    Science.gov (United States)

    Lees, Alexander C; Moura, Nárgila G; de Almeida, Arlete Silva; Vieira, Ima C G

    2015-01-01

    Expansion of oil palm plantations across the humid tropics has precipitated massive loss of tropical forest habitats and their associated speciose biotas. Oil palm plantation monocultures have been identified as an emerging threat to Amazonian biodiversity, but there are no quantitative studies exploring the impact of these plantations on the biome's biota. Understanding these impacts is extremely important given the rapid projected expansion of oil palm cultivation in the basin. Here we investigate the biodiversity value of oil palm plantations in comparison with other dominant regional land-uses in Eastern Amazonia. We carried out bird surveys in oil palm plantations of varying ages, primary and secondary forests, and cattle pastures. We found that oil palm plantations retained impoverished avian communities with a similar species composition to pastures and agrarian land-uses and did not offer habitat for most forest-associated species, including restricted range species and species of conservation concern. On the other hand, the forests that the oil palm companies are legally obliged to protect hosted a relatively species-rich community including several globally-threatened bird species. We consider oil palm to be no less detrimental to regional biodiversity than other agricultural land-uses and that political pressure exerted by large landowners to allow oil palm to count as a substitute for native forest vegetation in private landholdings with forest restoration deficits would have dire consequences for regional biodiversity.

  9. Biotransformations of terpenes by fungi from Amazonian citrus plants.

    Science.gov (United States)

    Moreno Rueda, Maria Gabriela; Guerrini, Alessandra; Giovannini, Pier Paolo; Medici, Alessandro; Grandini, Alessandro; Sacchetti, Gianni; Pedrini, Paola

    2013-10-01

    The biotransformations of (RS)-linalool (1), (S)-citronellal (2), and sabinene (3) with fungi isolated from the epicarp of fruits of Citrus genus of the Amazonian forest (i.e., C. limon, C. aurantifolia, C. aurantium, and C. paradisiaca) are reported. The more active strains have been characterized, and they belong to the genus Penicillium and Fusarium. Different biotransformation products have been obtained depending on fungi and substrates. (RS)-Linalool (1) afforded the (E)- and (Z)-furanlinalool oxides (7 and 8, resp.; 39 and 37% yield, resp.) with Fusarium sp. (1D2), 6-methylhept-5-en-2-one (4; 49%) with F. fujikuroi, and 1-methyl-1-(4-methypentyl)oxiranemethanol (6; 42%) with F. concentricum. (S)-Citronellal (2) gave (S)-citronellol (12; 36-76%) and (S)-citronellic acid (11; 5-43%) with Fusarium species, while diastereoisomeric p-menthane-3,8-diols 13 and 14 (20 and 50% yield, resp.) were obtained as main products with Penicillium paxilli. Finally, both Fusarium species and P. paxilli biotransformed sabinene (3) to give mainly 4-terpineol (19; 23-56%), and (Z)- and (E)-sabinene hydrates (17 (3-21%) and 18 (11-17%), resp.).

  10. Ocurrence of Cryptosporidium spp. in Amazonian manatees (Trichechus inunguis, Natterer, 1883

    Directory of Open Access Journals (Sweden)

    Maria Aparecida da Glória Faustino

    2007-09-01

    Full Text Available The apicomplexa protozoa Cryptosporidium infects several mammals, including terrestrial and aquatic species. In the epidemiology of this infection, the ingestion of water and/or food contamined with oocysts comprises the main mechanism of transmission to susceptible animals. Among the Sirenians, the occurrence of this coccidium has been reported in dugongs (Dugong dugon and Antillean manatee (Trichechus manatus manatus. The present study was conducted with the aim of verifying the occurrence of Cryptosporidium spp. in Amazonian manatee. For this purpose, fecal samples were collected from ten free-ranging Amazonian manatees, two specimens in captivity, and 103 supernatants fecal samples. The samples were processed by the sedimentation method in formol-ether and Kinyoun stain technique for the presence of Cryptosporidium spp.. The positive samples were then submitted to Direct Immunoflorescence Test. The results showed 4.34% (05/115 of positive samples. This is the first report of Cryptosporidium spp. in the Amazonian manatee.

  11. Persistent effects of pre-Columbian plant domestication on Amazonian forest composition.

    Science.gov (United States)

    Levis, C; Costa, F R C; Bongers, F; Peña-Claros, M; Clement, C R; Junqueira, A B; Neves, E G; Tamanaha, E K; Figueiredo, F O G; Salomão, R P; Castilho, C V; Magnusson, W E; Phillips, O L; Guevara, J E; Sabatier, D; Molino, J-F; López, D Cárdenas; Mendoza, A M; Pitman, N C A; Duque, A; Vargas, P Núñez; Zartman, C E; Vasquez, R; Andrade, A; Camargo, J L; Feldpausch, T R; Laurance, S G W; Laurance, W F; Killeen, T J; Nascimento, H E Mendonça; Montero, J C; Mostacedo, B; Amaral, I L; Guimarães Vieira, I C; Brienen, R; Castellanos, H; Terborgh, J; Carim, M de Jesus Veiga; Guimarães, J R da Silva; Coelho, L de Souza; Matos, F D de Almeida; Wittmann, F; Mogollón, H F; Damasco, G; Dávila, N; García-Villacorta, R; Coronado, E N H; Emilio, T; Filho, D de Andrade Lima; Schietti, J; Souza, P; Targhetta, N; Comiskey, J A; Marimon, B S; Marimon, B-H; Neill, D; Alonso, A; Arroyo, L; Carvalho, F A; de Souza, F C; Dallmeier, F; Pansonato, M P; Duivenvoorden, J F; Fine, P V A; Stevenson, P R; Araujo-Murakami, A; Aymard C, G A; Baraloto, C; do Amaral, D D; Engel, J; Henkel, T W; Maas, P; Petronelli, P; Revilla, J D Cardenas; Stropp, J; Daly, D; Gribel, R; Paredes, M Ríos; Silveira, M; Thomas-Caesar, R; Baker, T R; da Silva, N F; Ferreira, L V; Peres, C A; Silman, M R; Cerón, C; Valverde, F C; Di Fiore, A; Jimenez, E M; Mora, M C Peñuela; Toledo, M; Barbosa, E M; Bonates, L C de Matos; Arboleda, N C; Farias, E de Sousa; Fuentes, A; Guillaumet, J-L; Jørgensen, P Møller; Malhi, Y; de Andrade Miranda, I P; Phillips, J F; Prieto, A; Rudas, A; Ruschel, A R; Silva, N; von Hildebrand, P; Vos, V A; Zent, E L; Zent, S; Cintra, B B L; Nascimento, M T; Oliveira, A A; Ramirez-Angulo, H; Ramos, J F; Rivas, G; Schöngart, J; Sierra, R; Tirado, M; van der Heijden, G; Torre, E V; Wang, O; Young, K R; Baider, C; Cano, A; Farfan-Rios, W; Ferreira, C; Hoffman, B; Mendoza, C; Mesones, I; Torres-Lezama, A; Medina, M N U; van Andel, T R; Villarroel, D; Zagt, R; Alexiades, M N; Balslev, H; Garcia-Cabrera, K; Gonzales, T; Hernandez, L; Huamantupa-Chuquimaco, I; Manzatto, A G; Milliken, W; Cuenca, W P; Pansini, S; Pauletto, D; Arevalo, F R; Reis, N F Costa; Sampaio, A F; Giraldo, L E Urrego; Sandoval, E H Valderrama; Gamarra, L Valenzuela; Vela, C I A; Ter Steege, H

    2017-03-03

    The extent to which pre-Columbian societies altered Amazonian landscapes is hotly debated. We performed a basin-wide analysis of pre-Columbian impacts on Amazonian forests by overlaying known archaeological sites in Amazonia with the distributions and abundances of 85 woody species domesticated by pre-Columbian peoples. Domesticated species are five times more likely than nondomesticated species to be hyperdominant. Across the basin, the relative abundance and richness of domesticated species increase in forests on and around archaeological sites. In southwestern and eastern Amazonia, distance to archaeological sites strongly influences the relative abundance and richness of domesticated species. Our analyses indicate that modern tree communities in Amazonia are structured to an important extent by a long history of plant domestication by Amazonian peoples.

  12. Genetic Relationships and Spatial Genetic Structure Among Populations of Rhodnius prolixus (Hemiptera: Reduviidae) in Colombia and Venezuela Based on Mitochondrial Cytochrome-b Sequences.

    Science.gov (United States)

    Luna-Marín, K P; Angulo-Silva, V M; Hernández-Torres, J; Ruiz-García, M

    2016-11-26

    One hundred twenty Rhodnius prolixus (Stal) (Hemiptera: Reduviidae) specimens from 6 Colombian Departments and 1 Venezuelan State had 594-bp of the mitochondrial cytochrome-b gene sequenced to improve the understanding of evolutionary processes that shape the main vector of Chagas disease. The levels of genetic diversity for this species were low-medium with reference to other bugs. The genetic heterogeneity among the populations was very limited which means there has been extensive gene flow and/or very recent split processes. The overall sample as well as some individual populations showed evidence of recent population expansions (with the exception of Arauca, which yielded evidence of a bottleneck for a mismatch distribution). This expansion (11,000 or 2000-25,000 year ago depending of two procedures employed) coincides with the ending of the last intense glacial conditions during the Pleistocene and the beginning of the Holocene that had a warmer and wetter climate. Some of our autocorrelation analyses (AIDA and Genetic Landscape Interpolation Analysis) indicated local patches of high genetic similarity but no globally significant spatial structure. We did show an original haplotype distributed throughout the entirety of the geographical area studied.

  13. Amazonian and neotropical plant communities on glacial time-scales: The failure of the aridity and refuge hypotheses

    Science.gov (United States)

    Colinvaux, P. A.; De Oliveira, P. E.; Bush, M. B.

    2000-01-01

    Plants respond to Pleistocene climatic change as species, not as associations or biomes. This has been demonstrated unequivocally by paleobotanical data for temperate latitudes. In the far richer vegetations of the tropics species populations also fluctuated independently in response to climatic forcing, from their longlasting glacial states to the patterns of brief interglacials like the present and back again. We use pollen data to reconstruct the vegetation of the Amazon basin in oxygen isotope stages 3 and 2 of the last glaciation in order to measure how the plant populations of the Amazon responded to the global warming at the onset of the Holocene. We find that plant communities of the neotropics vent copious pollen to lake sediments and that this pollen yields powerful signals for community composition. Three continuous sedimentary records reaching through oxygen isotope stage 2 are available from the Amazon lowlands, those from Carajas, Lake Pata and marine deposits off the mouth of the Amazon River. All three records yield pollen histories of remarkable constancy and stability. By comparing them with deposits of equal antiquity from the cerrado (savanna) of central Brazil, we show that most of the Amazon lowlands remained under forest throughout a glacial cycle. This forest was never fragmented by open vegetation as postulated by the refugia hypothesis. Instead the intact forest of glacial times included significant populations of plants that are now montane, suggesting that the global warming of the early Holocene resulted in the expulsion of heat intolerant plants from the lowland forest. Pollen data from the Amazonian flank of the Andes and from Pacific Panama provide evidence that populations of these heat intolerant plants survive the heat of interglacials in part by maintaining large populations at cooler montane altitudes. Our conclusion that the Amazon lowlands were forested in glacial times specifically refutes the hypothesis of Amazonian glacial

  14. Implementing a generic method for bias correction in statistical models using random effects, with spatial and population dynamics examples

    DEFF Research Database (Denmark)

    Thorson, James T.; Kristensen, Kasper

    2016-01-01

    configurations of an age-structured population dynamics model. This simulation experiment shows that the epsilon-method and the existing bias-correction method perform equally well in data-rich contexts, but the epsilon-method is slightly less biased in data-poor contexts. We then apply the epsilon....... Quantities of biological or management interest ("derived quantities") are then often calculated as nonlinear functions of fixed and random effect estimates. However, the conventional "plug-in" estimator for a derived quantity in a maximum likelihood mixed-effects model will be biased whenever the estimator...... is calculated as a nonlinear function of random effects. We therefore describe and evaluate a new "epsilon" estimator as a generic bias-correction estimator for derived quantities. We use simulated data to compare the epsilon-method with an existing bias-correction algorithm for estimating recruitment in four...

  15. Spatial and temporal assessment of the initial pattern of phytoplankton population in a newly built coastal reservoir

    Science.gov (United States)

    Ren, Xiangyu; Yang, Kai; Che, Yue; Wang, Mingwei; Zhou, Lili; Chen, Liqiao

    2016-09-01

    For decades, the main threat to the water security of a metropolis, such as the city of Shanghai, has been the rapidly growing demand for water and at the same time, the decrease in water quality, including eutrophication. Therefore Shanghai shifted the preferred freshwater source to the Yangtze Estuary and constructed the Qingcaosha Reservoir, which is subject to less eutrophic water from the Yangtze River. To assess the population of phytoplankton for the first time in the newly built reservoir, this study improved an integrated method to assess the phytoplankton pattern in large-water-area reservoirs and lakes, using partial triadic analysis and Geographic Information Systems. Monthly sampling and monitoring from 10 stations in the reservoir from July 2010 to December 2011 were conducted. The study examined the common pattern of the phytoplankton population structure and determined the differences in the specific composition of the phytoplankton community during the transition period of the reservoir. The results suggest that in all but three sampling stations in the upper parts of Qingcaosha Reservoir, there was a strong common compromise in 2011. The two most important periods occurred from late summer to autumn and from winter to early spring. The former was characterized by the dominance of cyanobacteria, whereas the latter was characterized by the dominance of both chlorophyta and diatoms. Cyanobacteria ( Microcystis spp. as the main genus) were the monopolistic dominant species in the summer after reservoir operation. The statistical analysis also indicated the necessity for regular monitoring to focus on the stations in the lower parts of the reservoir and on several limited species.

  16. Indifference to dissonance in native Amazonians reveals cultural variation in music perception.

    Science.gov (United States)

    McDermott, Josh H; Schultz, Alan F; Undurraga, Eduardo A; Godoy, Ricardo A

    2016-07-28

    by biology remains debated. One widely discussed phenomenon is that some combinations of notes are perceived by Westerners as pleasant, or consonant, whereas others are perceived as unpleasant,or dissonant. The contrast between consonance and dissonance is central to Western music and its origins have fascinated scholars since the ancient Greeks. Aesthetic responses to consonance are commonly assumed by scientists to have biological roots, and thus to be universally present in humans. Ethnomusicologists and composers, in contrast, have argued that consonance is a creation of Western musical culture. The issue has remained unresolved, partly because little is known about the extent of cross-cultural variation in consonance preferences. Here we report experiments with the Tsimane'--a native Amazonian society with minimal exposure to Western culture--and comparison populations in Bolivia and the United States that varied in exposure to Western music. Participants rated the pleasantness of sounds. Despite exhibiting Western-like discrimination abilities and Western-like aesthetic responses to familiar sounds and acoustic roughness, the Tsimane' rated consonant and dissonant chords and vocal harmonies as equally pleasant. By contrast, Bolivian city- and town-dwellers exhibited significant preferences for consonance,albeit to a lesser degree than US residents. The results indicate that consonance preferences can be absent in cultures sufficiently isolated from Western music, and are thus unlikely to reflect innate biases or exposure to harmonic natural sounds. The observed variation in preferences is presumably determined by exposure to musical harmony, suggesting that culture has a dominant role in shaping aesthetic responses to music.

  17. Dental caries profile in Monte Negro, Amazonian state of Rondônia, Brazil, in 2008

    Directory of Open Access Journals (Sweden)

    Roosevelt Silva Bastos

    2010-10-01

    Full Text Available OBJECTIVE: This epidemiological survey assessed the dental caries profile in Monte Negro, a small town in the Amazonian state of Rondônia, Brazil, and its relationship with the northern region, national and global goals for oral health in the years 2000 and 2020. MATERIAL AND METHODS: The groups randomly examined were composed of individuals aged 5, 12, 15 to 19, 35 to 44, 65 to 74 years, living in both rural and urban areas. RESULTS: The means dft (standard deviation and DMFT (standard deviation for the groups were, respectively, 3.15 (3.12, 3.41 (2.69, 5.96 (4.19, 16.00 (7.30 and 25.96 (9.82. Caries-free individuals were 34.42%, 14.81% and 8.16% in the preschoolchildren, schoolchildren and adolescent groups, respectively. The Significant Caries Index percentages applied to the two younger groups were 6.65 and 6.70, and they increased to 32.00 in the individuals aged 65 to 74 years. Care Index percentages for adolescents, adults and elderly groups were, respectively, 29.40, 25.00 and 1.41. The dental caries profile in Monte Negro in 2008 shows that, 8 years after the year 2000, no FDI/WHO goal for any age settled in 1982 has been achieved. Dental caries increased with age and the main dental problem of adult and elderly groups was tooth loss. CONCLUSION: Oral health promotion and prevention of oral disease policies are urgent needs. Setting of oral health goals and targets to people living in Monte Negro or Amazonia to be pursuit and achieved in a near future is an important action to do because of the culture, sanitary conditions and socioeconomic aspects of this particular population.

  18. The impact of deforestation in the Amazonian atmospheric radiative balance: a remote sensing assessment

    Directory of Open Access Journals (Sweden)

    E. T. Sena

    2012-06-01

    Full Text Available This paper addresses the Amazonian radiative budget after considering three aspects of deforestation: (i the emission of aerosols from biomass burning due to forest fires; (ii changes in surface albedo after deforestation and (iii modifications in the column water vapour amount over deforested areas. Simultaneous Clouds and the Earth's Radiant Energy System (CERES shortwave fluxes and aerosol optical depth (AOD retrievals from the Moderate Resolution Imaging SpectroRadiometer (MODIS were analysed during the peak of the biomass burning seasons (August and September from 2000 to 2009. A discrete-ordinate radiative transfer (DISORT code was used to extend instantaneous remote sensing radiative forcing assessments into 24-h averages. The mean direct radiative forcing of aerosols at the top of the atmosphere (TOA during the biomass burning season for the 10-yr studied period was −5.6 ± 1.7 W m−2. Furthermore, the spatial distribution of the direct radiative forcing of aerosols over Amazon was obtained for the biomass burning season of each year. It was observed that for high AOD (larger than 1 at 550 nm the imbalance in the radiative forcing at the TOA may be as high as −20 W m−2 locally. The surface reflectance plays a major role in the aerosol direct radiative effect. The study of the effects of biomass burning aerosols over different surface types shows that the direct radiative forcing is systematically more negative over forest than over savannah-like covered areas. Values of −15.7 ± 2.4 W m−2550 nm and −9.3 ± 1.7 W m−2550 nm were calculated for the mean daily aerosol forcing efficiencies over forest and savannah-like vegetation respectively. The overall mean annual albedo-change radiative forcing due to deforestation over the state of Rondônia, Brazil, was determined as −7.3 ± 0.9 W m−2. Biomass burning aerosols impact the radiative

  19. Within-population spatial genetic structure in four naturally fragmented species of a neotropical inselberg radiation, Alcantarea imperialis, A. geniculata, A. glaziouana and A. regina (Bromeliaceae).

    Science.gov (United States)

    Barbará, T; Lexer, C; Martinelli, G; Mayo, S; Fay, M F; Heuertz, M

    2008-09-01

    Studies of organisms on 'terrestrial islands' can improve our understanding of two unresolved issues in evolutionary genetics: the likely long-term effects of habitat fragmentation and the genetic underpinnings of continental species radiations in island-like terrestrial habitats. We have addressed both issues for four closely related plant species of the adaptive radiation Bromeliaceae, Alcantarea imperialis, A. geniculata, A. regina and A. glaziouana. All four are adapted to ancient, isolated inselberg rock outcrops in the Brazilian Atlantic rainforest and are thus long-term fragmented by nature. We used eight nuclear microsatellites to study within-population spatial genetic structure (SGS) and historical gene dispersal in nine populations of these species. Within-population SGS reflected known between-species differences in mating systems. The strongest SGS observed in A. glaziouana (Sp=0.947) was stronger than literature estimates available for plants. Analysis of short- and long-distance components of SGS identified biparental inbreeding, selfing and restricted seed dispersal as main determinants of SGS, with restricted pollen dispersal by bats contributing in some localities. The ability of Alcantarea spp. to colonize isolated inselbergs probably stems from their flexible mating systems and an ability to tolerate inbreeding. Short-ranging gene dispersal (average sigma=7-27 m) is consistent with a loss of dispersal power in terrestrial island habitats. Population subdivision associated with sympatric colour morphs in A. imperialis is accompanied by between-morph differences in pollen and seed dispersal. Our results indicate a high potential for divergence with gene flow in inselberg bromeliads and they provide base-line data about the long-term effects of fragmentation in plants.

  20. Conservation genetics of threatened Hippocampus guttulatus in vulnerable habitats in NW Spain: temporal and spatial stability of wild populations with flexible polygamous mating system in captivity.

    Directory of Open Access Journals (Sweden)

    Almudena López

    Full Text Available This study was focused on conservation genetics of threatened Hippocampus guttulatus on the Atlantic coast of NW Iberian Peninsula. Information about spatial structure and temporal stability of wild populations was obtained based on microsatellite markers, and used for monitoring a captive breeding program firstly initiated in this zone at the facilities of the Institute of Marine Research (Vigo, Spain. No significant major genetic structure was observed regarding the biogeographical barrier of Cape Finisterre. However, two management units under continuous gene flow are proposed based on the allelic differentiation between South-Atlantic and Cantabrian subpopulations, with small to moderate contemporary effective size based on single-sample methods. Temporal stability was observed in South-Atlantic population samples of H. guttulatus for the six-year period studied, suggesting large enough effective population size to buffer the effects of genetic drift within the time frame of three generations. Genetic analysis of wild breeders and offspring in captivity since 2009 allowed us to monitor the breeding program founded in 2006 in NW Spain for this species. Similar genetic diversity in the renewed and founder broodstock, regarding the wild population of origin, supports suitable renewal and rearing processes to maintain genetic variation in captivity. Genetic parentage proved single-brood monogamy in the wild and in captivity, but flexible short- and long-term mating system under captive conditions, from strict monogamy to polygamy within and/or among breeding seasons. Family analysis showed high reproductive success in captivity under genetic management assisted by molecular relatedness estimates to avoid inbreeding. This study provides genetic information about H. guttulatus in the wild and captivity within an uncovered geographical range for this data deficient species, to be taken into account for management and conservation purposes.

  1. Evidence for ecological divergence across a mosaic of soil types in an Amazonian tropical tree: Protium subserratum (Burseraceae).

    Science.gov (United States)

    Misiewicz, Tracy M; Fine, Paul V A

    2014-05-01

    Soil heterogeneity is an important driver of divergent natural selection in plants. Neotropical forests have the highest tree diversity on earth, and frequently, soil specialist congeners are distributed parapatrically. While the role of edaphic heterogeneity in the origin and maintenance of tropical tree diversity is unknown, it has been posited that natural selection across the patchwork of soils in the Amazon rainforest is important in driving and maintaining tree diversity. We examined genetic and morphological differentiation among populations of the tropical tree Protium subserratum growing parapatrically on the mosaic of white-sand, brown-sand and clay soils found throughout western Amazonia. Nuclear microsatellites and leaf morphology were used to (i) quantify the extent of phenotypic and genetic divergence across habitat types, (ii) assess the importance of natural selection vs. drift in population divergence, (iii) determine the extent of hybridization and introgression across habitat types, (iv) estimate migration rates among populations. We found significant morphological variation correlated with soil type. Higher levels of genetic differentiation and lower migration rates were observed between adjacent populations found on different soil types than between geographically distant populations on the same soil type. PST -FST comparisons indicate a role for natural selection in population divergence among soil types. A small number of hybrids were detected suggesting that gene flow among soil specialist populations may occur at low frequencies. Our results suggest that edaphic specialization has occurred multiple times in P. subserratum and that divergent natural selection across edaphic boundaries may be a general mechanism promoting and maintaining Amazonian tree diversity.

  2. Progression of natural attenuation processes at a crude oil spill site: II. Controls on spatial distribution of microbial populations.

    Science.gov (United States)

    Bekins, B A; Cozzarelli, I M; Godsy, E M; Warren, E; Essaid, H I; Tuccillo, M E

    2001-12-15

    A multidisciplinary study of a crude-oil contaminated aquifer shows that the distribution of microbial physiologic types is strongly controlled by the aquifer properties and crude oil location. The microbial populations of four physiologic types were analyzed together with permeability, pore-water chemistry, nonaqueous oil content, and extractable sediment iron. Microbial data from three vertical profiles through the anaerobic portion of the contaminated aquifer clearly show areas that have progressed from iron-reduction to methanogenesis. These locations contain lower numbers of iron reducers, and increased numbers of fermenters with detectable methanogens. Methanogenic conditions exist both in the area contaminated by nonaqueous oil and also below the oil where high hydrocarbon concentrations correspond to local increases in aquifer permeability. The results indicate that high contaminant flux either from local dissolution or by advective transport plays a key role in determining which areas first become methanogenic. Other factors besides flux that are important include the sediment Fe(II) content and proximity to the water table. In locations near a seasonally oscillating water table, methanogenic conditions exist only below the lowest typical water table elevation. During 20 years since the oil spill occurred, a laterally continuous methanogenic zone has developed along a narrow horizon extending from the source area to 50-60 m downgradient. A companion paper [J. Contam. Hydrol. 53, 369-386] documents how the growth of the methanogenic zone results in expansion of the aquifer volume contaminated with the highest concentrations of benzene, toluene, ethylbenzene, and xylenes.

  3. Development of population structure and spatial distribution patterns of a restored forest during 17-year succession (1993-2010) in Pingshuo opencast mine spoil, China.

    Science.gov (United States)

    Zhao, Zhongqiu; Wang, Lianhua; Bai, Zhongke; Pan, Ziguan; Wang, Yun

    2015-07-01

    Afforestation of native tree species is often recommended for ecological restoration in mining areas, but the understanding of the ecological processes of restored vegetation is quite limited. In order to provide insight of the ecological processes of restored vegetation, in this study, we investigate the development of the population structure and spatial distribution patterns of restored Robinia pseudoacacia (ROPS) and Pinus tabuliformis (PITA) mixed forests during the 17 years of the mine spoil period of the Pingshuo opencast mine, Shanxi Province, China. After a 17-year succession, apart from the two planted species, Ulmus pumila (ULPU), as an invasive species, settled in the plot along with a large number of small diameter at breast height (DBH) size. In total, there are 10,062 living individual plants, much more than that at the plantation (5105), and ROPS had become the dominant species with a section area with a breast height of 9.40 m(2) hm(-2) and a mean DBH of 6.72 cm, much higher than both PITA and ULPU. The DBH size classes of all the total species showed inverted J-shaped distributions, which may have been a result of the large number of small regenerated ULPU trees. The DBH size classes of both ROPS and PITA showed peak-type structures with individuals mainly gathering in the moderate DBH size class, indicating a relatively healthy DBH size class structure. Meanwhile, invasive ULPU were distributed in a clear L shape, concentrating on the small DBH size class, indicating a relatively low survival rate for adult trees. Both ROPS and PITA species survival in the plantation showed uniform and aggregated distribution at small scales and random with scales increasing. ULPU showed a strong aggregation at small scales as well as random with scales increasing. Both the population structure and spatial distribution indicated that ROPS dominates and will continue to dominate the community in the future succession, which should be continuously monitored.

  4. Spatial Pattern of Pteroceltis tatarinowii Populations in Langya Moutain of Anhui Province%安徽琅琊山青檀种群空间格局

    Institute of Scientific and Technical Information of China (English)

    张莉; 张小平; 陆畅; 李晓红

    2012-01-01

    利用点格局O-Ring统计法,分析安徽省琅琊山青檀种群的空间分布格局.结果表明:青檀种群趋于小龄化,种群结构呈倒“J”型,属增长型种群;种群中Ⅰ龄级个体在r<25 m的尺度上呈集群分布;Ⅱ龄级个体呈随机分布,随龄级增大,逐渐趋于均匀分布;不同龄级间青檀个体的关联性研究表明,只有Ⅰ龄级和Ⅱ龄级个体在r>8 m的尺度上呈正关联,其余各龄级间均无显著关联.%The spatial distribution patterns and associations of different ages of P. Tatarinowii were analysed in Langya Mountain, Anhui Province by O-Ring statistics in point patterns analysis. The results showed that the P. Tatrinowii population was of an increasing one, the age class tended to be young ages and the age structure presented a reversedly J-shaped pattern. The age-class I exhibited a clumped spatial distribution at the scale of r 8 m.

  5. Alluvial deposits and plant distribution in an Amazonian lowland megafan

    Science.gov (United States)

    Zani, H.; Rossetti, D.; Cremon; Cohen, M.; Pessenda, L. C.

    2012-12-01

    A large volume of sandy alluvial deposits (> 1000 km2) characterizes a flat wetland in northern Amazonia. These have been recently described as the sedimentary record of a megafan system, which have a distinct triangular shape produced by highly migratory distributary rivers. The vegetation map suggests that this megafan is dominated by open vegetation in sharp contact with the surround rainforest. Understanding the relationship between geomorphological processes and vegetation distribution is crucial to decipher and conserve the biodiversity in this Amazonian ecosystem. In this study we interpret plant dynamics over time, and investigate its potential control by sedimentary processes during landscape evolution. The study area is located in the Viruá National Park. Two field campaigns were undertaken in the dry seasons of 2010 and 2011 and the sampling sites were selected by combining accessibility and representativeness. Vegetation contrasts were recorded along a transect in the medial section of the Viruá megafan. Due to the absence of outcrops, samples were extracted using a core device, which allowed sampling up to a depth of 7.5 m. All cores were opened and described in the field, with 5 cm3 samples collected at 20 cm intervals. The δ13C of organic matter was used as a proxy to distinguish between C3 and C4 plant communities. The chronology was established based on radiocarbon dating. The results suggest that the cores from forested areas show the most depleted values of δ13C, ranging from -32.16 to -27.28‰. The δ13C curve in these areas displays typical C3 land plant values for the entire record, which covers most of the Holocene. This finding indicates that either the vegetation remained stable over time or the sites were dominated by aquatic environments with freshwater plants before forest establishment. The cores from the open vegetation areas show a progressive upward enrichment in δ13C values, which range from -28.50 to -19.59‰. This trend is

  6. Thresholds of species loss in Amazonian deforestation frontier landscapes.

    Science.gov (United States)

    Ochoa-Quintero, Jose Manuel; Gardner, Toby A; Rosa, Isabel; Ferraz, Silvio Frosini de Barros; Sutherland, William J

    2015-04-01

    In the Brazilian Amazon, private land accounts for the majority of remaining native vegetation. Understanding how land-use change affects the composition and distribution of biodiversity in farmlands is critical for improving conservation strategies in the face of rapid agricultural expansion. Working across an area exceeding 3 million ha in the southwestern state of Rondônia, we assessed how the extent and configuration of remnant forest in replicate 10,000-ha landscapes has affected the occurrence of a suite of Amazonian mammals and birds. In each of 31 landscapes, we used field sampling and semistructured interviews with landowners to determine the presence of 28 large and medium sized mammals and birds, as well as a further 7 understory birds. We then combined results of field surveys and interviews with a probabilistic model of deforestation. We found strong evidence for a threshold response of sampled biodiversity to landscape level forest cover; landscapes with deforested landscapes many species are susceptible to extirpation following relatively small additional reductions in forest area. In the model of deforestation by 2030 the number of 10,000-ha landscapes under a conservative threshold of 43% forest cover almost doubled, such that only 22% of landscapes would likely to be able to sustain at least 75% of the 35 focal species we sampled. Brazilian law requires rural property owners in the Amazon to retain 80% forest cover, although this is rarely achieved. Prioritizing efforts to ensure that entire landscapes, rather than individual farms, retain at least 50% forest cover may help safeguard native biodiversity in private forest reserves in the Amazon.

  7. Analysing Amazonian forest productivity using a new individual and trait-based model (TFS v.1)

    Science.gov (United States)

    Fyllas, N. M.; Gloor, E.; Mercado, L. M.; Sitch, S.; Quesada, C. A.; Domingues, T. F.; Galbraith, D. R.; Torre-Lezama, A.; Vilanova, E.; Ramírez-Angulo, H.; Higuchi, N.; Neill, D. A.; Silveira, M.; Ferreira, L.; Aymard C., G. A.; Malhi, Y.; Phillips, O. L.; Lloyd, J.

    2014-07-01

    Repeated long-term censuses have revealed large-scale spatial patterns in Amazon basin forest structure and dynamism, with some forests in the west of the basin having up to a twice as high rate of aboveground biomass production and tree recruitment as forests in the east. Possible causes for this variation could be the climatic and edaphic gradients across the basin and/or the spatial distribution of tree species composition. To help understand causes of this variation a new individual-based model of tropical forest growth, designed to take full advantage of the forest census data available from the Amazonian Forest Inventory Network (RAINFOR), has been developed. The model allows for within-stand variations in tree size distribution and key functional traits and between-stand differences in climate and soil physical and chemical properties. It runs at the stand level with four functional traits - leaf dry mass per area (Ma), leaf nitrogen (NL) and phosphorus (PL) content and wood density (DW) varying from tree to tree - in a way that replicates the observed continua found within each stand. We first applied the model to validate canopy-level water fluxes at three eddy covariance flux measurement sites. For all three sites the canopy-level water fluxes were adequately simulated. We then applied the model at seven plots, where intensive measurements of carbon allocation are available. Tree-by-tree multi-annual growth rates generally agreed well with observations for small trees, but with deviations identified for larger trees. At the stand level, simulations at 40 plots were used to explore the influence of climate and soil nutrient availability on the gross (ΠG) and net (ΠN) primary production rates as well as the carbon use efficiency (CU). Simulated ΠG, ΠN and CU were not associated with temperature. On the other hand, all three measures of stand level productivity were positively related to both mean annual precipitation and soil nutrient status

  8. Spatial and temporal distribution of atmospheric aerosols in the lowermost troposphere over the Amazonian tropical rainforest

    Directory of Open Access Journals (Sweden)

    R. Krejci

    2005-01-01

    Full Text Available We present measurements of aerosol physico-chemical properties below 5 km altitude over the tropical rain forest and the marine boundary layer (MBL obtained during the LBA-CLAIRE 1998 project. The MBL aerosol size distribution some 50-100km of the coast of French Guyana and Suriname showed a bi-modal shape typical of aged and cloud processed aerosol. The average particle number density in the MBL was 383cm-3. The daytime mixed layer height over the rain forest for undisturbed conditions was estimated to be between 1200-1500m. During the morning hours the height of the mixed layer increased by 144-180mh-1. The median daytime aerosol number density in the mixed layer increased from 450cm-3 in the morning to almost 800cm-3 in the late afternoon. The evolution of the aerosol size distribution in the daytime mixed layer over the rain forest showed two distinct patterns. Between dawn and midday, the Aitken mode particle concentrations increased, whereas later during the day, a sharp increase of the accumulation mode aerosol number densities was observed, resulting in a doubling of the morning accumulation mode concentrations from 150cm-3 to 300cm-3. Potential sources of the Aitken mode particles are discussed here including the rapid growth of ultrafine aerosol particles formed aloft and subsequently entrained into the mixed layer, as well as the contribution of emissions from the tropical vegetation to Aitken mode number densities. The observed increase of the accumulation mode aerosol number densities is attributed to the combined effect of: the direct emissions of primary biogenic particles from the rain forest and aerosol in-cloud processing by shallow convective clouds. Based on the similarities among the number densities, the size distributions and the composition of the aerosol in the MBL and the nocturnal residual layer we propose that the air originating in the MBL is transported above the nocturnal mixed layer up to 300-400km inland over the rain forest by night without significant processing.

  9. Effects of nano-void density, size and spatial population on thermal conductivity: a case study of GaN crystal

    Science.gov (United States)

    Zhou, X. W.; Jones, R. E.

    2012-08-01

    The thermal conductivity of a crystal is sensitive to the presence of surfaces and nanoscale defects. While this opens tremendous opportunities to tailor thermal conductivity, true ‘phonon engineering’ of nanocrystals for a specific electronic or thermoelectric application can only be achieved when the dependence of thermal conductivity on the defect density, size and spatial population is understood and quantified. Unfortunately, experimental studies of the effects of nanoscale defects are quite challenging. While molecular dynamics simulations are effective in calculating thermal conductivity, the defect density range that can be explored with feasible computing resources is unrealistically high. As a result, previous work has not generated a fully detailed understanding of the dependence of thermal conductivity on nanoscale defects. Using GaN as an example, we have combined a physically motivated analytical model and highly converged large-scale molecular dynamics simulations to study the effects of defects on thermal conductivity. An analytical expression for thermal conductivity as a function of void density, size, and population has been derived and corroborated with the model, simulations, and experiments.

  10. Locating hybrid individuals in the red wolf (Canis rufus) experimental population area using a spatially targeted sampling strategy and faecal DNA genotyping.

    Science.gov (United States)

    Adams, Jennifer R; Lucash, Chris; Schutte, Leslie; Waits, Lisette P

    2007-05-01

    Hybridization with coyotes (Canis latrans) continues to threaten the recovery of endangered red wolves (Canis rufus) in North Carolina and requires the development of new strategies to detect and remove coyotes and hybrids. Here, we combine a spatially targeted faecal collection strategy with a previously published reference genotype data filtering method and a genetic test for coyote ancestry to screen portions of the red wolf experimental population area for the presence of nonred wolf canids. We also test the accuracy of our maximum-likelihood assignment test for identifying hybrid individuals using eight microsatellite loci instead of the original 18 loci and compare its performance to the Bayesian approach implemented in newhybrids. We obtained faecal DNA genotypes for 89 samples, 73 of which were matched to 23 known individuals. The performance of two sampling strategies - comprehensive sweep and opportunistic spot-check was evaluated. The opportunistic spot-check sampling strategy required less effort than the comprehensive sweep sampling strategy but identified fewer individuals. Six hybrids or coyotes were detected and five of these individuals were subsequently captured and removed from the population. The accuracy and power of the genetic test for coyote ancestry is decreased when using eight loci; however, nonred wolf canids are identified with high frequency. This combination of molecular and traditional field-based approaches has great potential for addressing the challenge of hybridization in other species and ecosystems.

  11. Spatial Variation of the Impacts of Climate Change and Population Growth on Water Resources in the Apalachicola-Chattahoochee-Flint River Basin

    Science.gov (United States)

    Lownsbery, K.; Steinschneider, S.; Brown, C. M.

    2013-12-01

    Water resource systems around the world are increasingly stressed from climate change and human development, which often results in conflict and highlights the need for appropriate management strategies. One example is the Apalachicola-Chattahoochee-Flint basin in the southeastern US, where decades of legal battles have attempted to apportion the water between metropolitan Atlanta, GA and other stakeholders. This study examines the relative impact of the most significant regional stressors - climate change and population growth, on stakeholder relevant metrics at appropriate time (the next 50 years) and spatial (basin and sub-basin) scales. The system is analyzed within a framework that imposes transient changes and encompasses the range of system response to projected changes. Significant findings are that population growth is the most significant stressor in the upper basin which encompasses the metropolitan Atlanta region. However, climate change, specifically precipitation decrease, is the most significant stressor for the center and Gulf of Mexico portions of the basin. Temperature has little impact because changes in agricultural water use are not considered. Additionally, the metric elasticity to stressor changes is nonlinear.

  12. Health and demography of native Amazonians: historical perspective and current status Saúde e demografia de povos indígenas amazônicos: perspectiva histórica e situação atual

    Directory of Open Access Journals (Sweden)

    Warren M. Hern

    1991-12-01

    Full Text Available Native Amazonians have been the victims of two massive historical assaults, one at the time of the Conquest and the other during the Twentieth century. Due to epidemic disease and environmental destruction, many tribes have gone from contact to displacement, decimation, and extinction in a single generation. Deculturation and the construction of large development projects have had catastrophic effects on native populations. In many ways, native Amazonians have experienced a reverse of the "Epidemiologic Transition". Paradoxically, one of the effects of cultural disruption for some native Amazonians has been the loss of cultural controls on fertility with the result that high fertility has become a major health problem. Combined with rapid growth of non-indigenous Amazonian populations, deforestation, and urbanization, native Amazonians face grave obstacles to long-term survival.Os nativos da Amazônia foram vítimas de dois grandes ataques históricos: um na época da Conquista e outro durante o século XX. Devido a doenças epidêmicas e à destruição ambiental, inúmeras tribos passaram a vivenciar problemas de deslocamentos, dizimação e extinção em uma única geração. A aculturação e a construção de grandes projetos desenvolvimentistas tiveram efeitos catastróficos sobre as populações indígenas. Em diversos aspectos, os nativos da Amazônia sofreram uma "Transição Epidemiológica". Paradoxalmente, um dos efeitos da dilaceração cultural para alguns dos nativos da Amazônia foi a perda de controles culturais sobre a fecundidade, fazendo com que a elevada fecundidade se tornasse um importante problema de saúde. Com o rápido crescimento de populações amazônicas não indígenas, o desmatamento e a urbanização, os nativos da Amazônia enfrentam sérios obstáculos para a sua sobrevivência a longo prazo.

  13. Enhanced vector borne disease surveillance of California Culex mosquito populations reveals spatial and species-specific barriers of infection.

    Energy Technology Data Exchange (ETDEWEB)

    VanderNoot, Victoria A.; Curtis, Deanna Joy; Koh, Chung-Yan; Brodsky, Benjamin H; Lane, Todd

    2014-08-01

    terium and c am p y l o bacter bac t er i al spec i e s . W e utilized the s e mic r obial transcri p tomes pre s e nt in g e ogra p hical l y defined Cul e x po p ul a tions to defi n e spatial and m osqui t o specie s -spec i fic ba r r iers of i n fecti o n. T he v i r ome and microbi o me c o mpos i tion id e ntified in e ach mosqui t o p o ol pr o v i ded suf f icient resolut i on to dete r m i ne both the mosq u ito species and the g e o graphic regi o n in Californ i a w h e re t h e mosqui t o po o l orig i n ated. T his d a ta pr o v i des ins i ght in t o the compl e x i t y of microb i al spec i es cir c ulati n g in med i cal l y i mport a nt Culex mosqui t oes a nd t h eir potent i al im p act o n t he tran s missi o n of v ector-b o rne human / veter i na r y p a t hogens in C a liforn i a.

  14. Widespread loess-like deposit in the Martian northern lowlands identifies Middle Amazonian climate change

    Science.gov (United States)

    Skinner, James A.; Tanaka, Kenneth L.; Thomas Platz,

    2014-01-01

    Consistently mappable units critical to distinguishing the style and interplay of geologic processes through time are sparse in the Martian lowlands. This study identifies a previously unmapped Middle Amazonian (ca. 1 Ga) unit (Middle Amazonian lowland unit, mAl) that postdates the Late Hesperian and Early Amazonian lowland plains by >2 b.y. The unit is regionally defined by subtle marginal scarps and slopes, has a mean thickness of 32 m, and extends >3.1 × 106 km2 between lat 35°N and 80°N. Pedestal-type craterforms and nested, arcuate ridges (thumbprint terrain) tend to occur adjacent to unit mAl outcrops, suggesting that current outcrops are vestiges of a more extensive deposit that previously covered ∼16 × 106 km2. Exposed layers, surface pits, and the draping of subjacent landforms allude to a sedimentary origin, perhaps as a loess-like deposit emplaced rhythmically through atmospheric fallout. We propose that unit mAl accumulated coevally with, and at the expense of, the erosion of the north polar basal units, identifying a major episode of Middle Amazonian climate-driven sedimentation in the lowlands. This work links ancient sedimentary processes to climate change that occurred well before those implied by current orbital and spin axis models.

  15. Legacies of Amazonian dark earths on forest composition, structure and dynamics

    NARCIS (Netherlands)

    Quintero Vallejo, E.M.

    2015-01-01

    Summary

    Amazonian forest is seen as the archetype of pristine forests, untouched by humans, but this romantic view is far from reality. In recent years, there is increasing evidence of long and extensive landscape modification by humans. Processes of permanent inhabitation,

  16. Recent (Late Amazonian) enhanced backweathering rates on Mars : Paracratering evidence from gully alcoves

    NARCIS (Netherlands)

    De Haas, Tjalling; Conway, Susan J.; Krautblatter, Michael

    2015-01-01

    Mars is believed to have been exposed to low planet-wide weathering and denudation since the Noachian. However, the widespread occurrence of alcoves at the rim of pristine impact craters suggests locally enhanced recent backweathering rates. Here we derive Late Amazonian backweathering rates from th

  17. Commonness of Amazonian palm (Arecaceae) species: Cross-scale links and potential determinants

    DEFF Research Database (Denmark)

    Kristiansen, Thea; Svenning, J.-C.; Grández, César

    2009-01-01

    The mechanisms that cause variation in commonness (abundances and range sizes) of species remain debated in ecology, and a repeatedly observed pattern is the positive relation between local abundances and larger scale range sizes. We used the Amazonian palm species (Arecaceae) to investigate...

  18. Effects of Amazonian Dark Earths on growth and leaf nutrient balance of tropical tree seedlings

    NARCIS (Netherlands)

    Quintero Vallejo, Estela; Pena Claros, M.; Bongers, F.; Toledo, M.; Poorter, L.

    2015-01-01

    Background and aims: Amazonian Dark Earths (ADE) are ancient anthropogenic soils distributed in the Amazon basin. They are characterized by high nutrients such as phosphorus, calcium, potassium and nitrogen. We studied the effect of ADE on growth, morphology and physiology of 17 tree species from a

  19. Evolutionary patterns of range size, abundance and species richness in Amazonian angiosperm trees

    Science.gov (United States)

    Chave, Jérôme

    2016-01-01

    Amazonian tree species vary enormously in their total abundance and range size, while Amazonian tree genera vary greatly in species richness. The drivers of this variation are not well understood. Here, we construct a phylogenetic hypothesis that represents half of Amazonian tree genera in order to contribute to explaining the variation. We find several clear, broad-scale patterns. Firstly, there is significant phylogenetic signal for all three characteristics; closely related genera tend to have similar numbers of species and similar mean range size and abundance. Additionally, the species richness of genera shows a significant, negative relationship with the mean range size and abundance of their constituent species. Our results suggest that phylogenetically correlated intrinsic factors, namely traits of the genera themselves, shape among lineage variation in range size, abundance and species richness. We postulate that tree stature may be one particularly relevant trait. However, other traits may also be relevant, and our study reinforces the need for ambitious compilations of trait data for Amazonian trees. In the meantime, our study shows how large-scale phylogenies can help to elucidate, and contribute to explaining, macroecological and macroevolutionary patterns in hyperdiverse, yet poorly understood regions like the Amazon Basin. PMID:27651991

  20. Amazonian-aged fluvial system and associated ice-related features in Terra Cimmeria, Mars

    NARCIS (Netherlands)

    Adeli, Solmaz; Hauber, Ernst; Kleinhans, Maarten; Le Deit, Laetitia; Platz, Thomas; Fawdon, Peter; Jaumann, Ralf

    2016-01-01

    The Martian climate throughout the Amazonian is widely believed to have been cold and hyper-arid, very similar to the current conditions. However, ubiquitous evidence of aqueous and glacial activity has been recently reported, including channels that can be tens to hundreds of kilometres long, alluv

  1. The Perceptions of Knowledge and Learning of Amazonian Indigenous Teacher Education Students

    Science.gov (United States)

    Veintie, Tuija; Holm, Gunilla

    2010-01-01

    This study focuses on the perceptions of knowledge and learning by indigenous students in an intercultural bilingual teacher education programme in Amazonian Ecuador. The study framed within postcolonial and critical theory attempts to create a space for the indigenous students to speak about their own views through the use of photography and…

  2. [Myths concerning malarial transmission among Amazonian Indians and their relation with 2 types of transmission encountered in the Amazonian forest].

    Science.gov (United States)

    Molez, J F

    1999-01-01

    Among the Indians Desana's (Tukano amerindians) in the Upper Rio Negro, the interseasonal variation of the malarial fevers were associated with two myths (localised in two distinguishable places). One myth associates the malarial with the rivers which contain "malaria pots". Conception based on an observation of localised water collection in the banks and the rocky rapids ("banks and rocky's fever"). The transmission and the anophelian density present variation between the seasons in relation to the river's level. Another myth associates malarial fevers in the forest, with the song of a frog ("fever's frog") and the flowering and fructification of a tree (Poaqueira sericea Thul.). There is in South America a particular type of forest malaria, known as "Bromelia malaria" and denounced in human and/or simian transmission. This forest malaria is transmitted by the a sub-genus anopheles (Kerteszia) which larval breeding are areal in the canopy. The breeding places are found in the forest in the epiphyte bromeliads. To understand this type of transmission, we must take reference to the previous endomological data at the Upper Oyapock Wayâpi (Tupi amerindians). This Bromelia malaria could fluctuated according larval density variation, related to washing of epiphytes (end of the rainy season) or to their flowering (end of the dry season). The "fever's frog" myth collected at the Desana's in the Upper Rio Negro can be related to the existence of Bromelia malaria in this amazonian habitat. These myths showed the perfect adaptation of the amerindians to their environment and their complete knowledge of the neotropical forest.

  3. Spatial distribution

    DEFF Research Database (Denmark)

    Borregaard, Michael Krabbe; Hendrichsen, Ditte Katrine; Nachman, Gøsta Støger

    2008-01-01

    Living organisms are distributed over the entire surface of the planet. The distribution of the individuals of each species is not random; on the contrary, they are strongly dependent on the biology and ecology of the species, and vary over different spatial scale. The structure of whole...... populations reflects the location and fragmentation pattern of the habitat types preferred by the species, and the complex dynamics of migration, colonization, and population growth taking place over the landscape. Within these, individuals are distributed among each other in regular or clumped patterns......, depending on the nature of intraspecific interactions between them: while the individuals of some species repel each other and partition the available area, others form groups of varying size, determined by the fitness of each group member. The spatial distribution pattern of individuals again strongly...

  4. Richness and composition of macrophyte assemblages in four Amazonian lakes - doi: 10.4025/actascibiolsci.v35i3.11602

    Directory of Open Access Journals (Sweden)

    Sidinei Magela Thomaz

    2013-08-01

    Full Text Available Aquatic macrophytes are an important component in the structure of lakes in Neotropical floodplains, for example, because they support a high diversity of invertebrates and vertebrates. In this paper, we tested whether or not the variability of macrophyte assemblages is lower in spatially close quadrats than among quadrats of different lakes. The study was carried in four lakes in a large Amazonian floodplain (Purus river, where floating meadows were investigated. A total of 49 taxa of macrophytes were found. Five species dominated and three species were rare. Taxa richness, composition and beta diversity differed more between than within lakes. Because high beta diversity was found among the lakes, they should be considered individually important for maintaining the gamma diversity of macrophytes within the Purus River floodplain, and this should be considered in plans of lake management.  

  5. The long-term spatial-temporal trends and burden of esophageal cancer in one high-risk area: A population-registered study in Feicheng, China

    Science.gov (United States)

    Sun, Xiubin; Zhao, Deli; Liu, Yi; Liu, Yunxia; Yuan, Zhongshang; Wang, Jialin; Xue, Fuzhong

    2017-01-01

    Background Feicheng County is a high-risk area for esophageal cancer in Shandong province, China. It is important to determine the long-term spatio-temporal trends in epidemiological characteristics and the burden of esophageal cancer, especially since the implementation of the national esophageal cancer screening program for early detection and treatment in 2005. Methods The data collected in Feicheng County from 2001 to 2012 was extracted from the whole-population cancer registry system. The incidence, mortality, disability-adjusted life years (DALY) and changing trends in esophageal cancer according to age and sex were calculated and described. Results The incidence rate of esophageal cancer in Feicheng was consistently high, and increased significantly for male, but not for female from 2001 to 2012, according to the joinpoint regression analysis. The highest and lowest yearly crude incidence rates were 160.78 and 95.97 per 100000 for males, and 81.36 and 52.17 per 100000 for females. The highest and lowest crude yearly mortality rates were 122.26 and 94.40 per 100000 for males, and 60.75 and 49.35 per 100000for females. Esophageal squamous cell carcinoma was the main pathology type and the tumor location changed significantly from 2001 to 2012. Overall, the DALY remained roughly stable and was estimated as 11.50 for males and 4.90 for females per 1000 people. The burden was mainly caused by premature death. There is an obvious spatial pattern in the distribution of incidence density and burden. Conclusion Esophageal cancer remains a public health issue in Feicheng County with a high incidence, mortality and disease burden. The incidence and burden have obvious spatial heterogeneity, and further studies should be conducted to identify geographical risk factors for precise local prevention and control measures. PMID:28267769

  6. Estimating Amazonian methane emissions through 4D-Var inverse modelling with satellite observations from GOSAT and IASI

    Science.gov (United States)

    Wilson, C. J.; Chipperfield, M.; Gloor, M.; McNorton, J.; Miller, J. B.; Gatti, L. V.; Siddans, R.; Bloom, A. A.; Basso, L. S.; Boesch, H.; Parker, R.; Monks, S. A.

    2015-12-01

    Methane (CH4) is emitted from a range of anthropogenic and natural sources, and since the industrial revolution its mean atmospheric concentration has climbed dramatically. CH4 produces a relatively high radiative forcing effect upon the Earth's climate, and its atmospheric lifetime of approximately 10 years makes it an appealing target for the mitigation of climate change. However, the spatial and temporal variation of CH4 emissions are not well understood, though in recent years a number of top-down and bottom-up studies have attempted to construct improved emission budgets. However, some top-down studies suffer from poor observational coverage near the Amazon basin, particularly in the planetary boundary layer. Since emissions from this region, coming mainly from wetland and burning sources, are thought to be relatively high, additional observations in this region would greatly help to constrain the geographical distribution of the global CH4 emission budget. To this end, regular flask measurements of CH4 and other trace gases have been taken during flights over four Amazonian sites since 2010, as part of the AMAZONICA project. The GOSAT has been used to retrieve global column-average CH4 concentrations since mid-2009, whilst IASI, on-board Metop-A, has also been measuring atmospheric CH4 concentrations since its launch in 2006. We present an assessment of Amazonian methane emissions for 2010 and 2011 using the TOMCAT Chemical Transport Model and the new variational inverse model, INVICAT. These models are used to attribute methane variations at each Amazon site to a source type and region, to assess the ability of our current CH4 flux estimates to reproduce these observations and to produce improved posterior emission estimates through assimilation of atmospheric observations. This study represents the first use of the INVICAT scheme to constrain emissions of any atmospheric trace gas. Whilst there is generally good agreement between the model and the

  7. Drought tolerance as predicted by leaf water potential at turgor loss point varies strongly across species within an Amazonian forest

    OpenAIRE

    2015-01-01

    1. Amazonian droughts are predicted to become increasingly frequent and intense, and the vulnerability of Amazonian trees has become increasingly documented. However, little is known about the physiological mechanisms and the diversity of drought tolerance of tropical trees due to the lack of quantitative measurements. 2. Leaf water potential at wilting or turgor loss point (pi(tlp)) is a determinant of the tolerance of leaves to drought stress and contributes to plant-level physiological...

  8. 中国流动人口地域类型——划分方法及空间分布%The regional types of China's floating population: Identification methods and spatial patterns

    Institute of Scientific and Technical Information of China (English)

    刘盛和; 胡章; 邓羽; 王英杰

    2011-01-01

    With the rapid increase of the number and influence of floating population in China,it is urgently needed to understand the regional types of China's floating population and their spatial characteristics. After reviewing the current methods for identifying regional types of floating population, this paper puts forward a new composite-index identification method and its modification version which is consisted of two indexes of the net migration rate and gross migration rate. Then, the traditional single-index and the new composite-index identification methods are empirically tested to explore their spatial patterns and characteristics by using China's 2000 census data at county level. The results show: (1) The composite-index identification method is much better than traditional single-index method because it can measure the migration direction and scale of floating simultaneously, and in particular it can identify the unique regional types of floating population with large scale of immigration and emigration. (2)The modified composite-index identification method, by using the share of a region's certain type of floating population to the total in China as weights, can effectively correct the over- or under-estimated errors due to the rather large or small total population of a region. (3) The spatial patterns of different regional types of China's floating population are closely related to the regional differentiation of their natural environment, population density and socio-economic development level. The three active regional types of floating population are mainly located in the eastern part of China with lower elevation, more than 800 mm precipitation, rather higher population densities and economic development levels.

  9. Chemical characterization and antioxidant activity of Amazonian (Ecuador) Caryodendron orinocense Karst. and Bactris gasipaes Kunth seed oils.

    Science.gov (United States)

    Radice, Matteo; Viafara, Derwin; Neill, David; Asanza, Mercedes; Sacchetti, Gianni; Guerrini, Alessandra; Maietti, Silvia

    2014-01-01

    Nowadays, data concerning the composition of Caryodendron orinocense Karst. (Euphorbiaceae) and Bactris gasipaes Kunth (Arecaceae) seed oils are lacking. In light of this fact, in this paper fatty acids and unsaponifiable fraction composition have been determined using GC-MS, HPLC-DAD (Diode Array Detector), NMR approaches and possible future applications have been preliminary investigated through estimation of antioxidant activity, performed with DPPH test. For C. orinocense linoleic acid (85.59%) was the main component, lauric (33.29%) and myristic (27.76%) acids were instead the most abundant in B. gasipaes. C. orinocense unsaponifiable fraction (8.06%) evidenced a remarkable content of β-sitosterol, campesterol, stigmasterol, squalene and vitamin E (816 ppm). B. gasipaes revealed instead β-sitosterol and squalene as main constituents of unsaponifiable matter (3.01%). Antioxidant capacity evidenced the best performance of C. orinocense seed oil. These preliminary results could be interesting to suggest the improvement of the population's incomes from Amazonian basin. In particular the knowledge of chemical composition of C. orinocense and B. gasipaes oils could be helpful to divulge and valorize these autochthones plants.

  10. Spatial Genetic Structure of Two HIV-I-resistant Polymorphisms (CCR2-64Ⅰand SDF1-3'A) Alleles in Population of Shandong Province, China

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Objective To explore the spatial genetic structure of two HIV-I-resistant polymorphisms (CCR2-64Ⅰand SDF1-3'A) alleles in the population of Shandong Province, China. Methods Using the techniques of spatial stratified sampling and spatial statistics, the spatial genetic structure of the locus (CCR2-64Ⅰand SDF1-3'A), which was shown to be important co-receptor for HIV infection, was quantified from the populations of 36 sampled counties of Shandong Province, and a total of 3147 and 3172 samples were taken for testing CCR2-64I and SDF1-3'A respectively from individuals without known history of HIV-I infection and AIDS symptoms. Results There were significantly spatial genetic structures of the two alleles at different spatial distance classes on the scale of populations, but on the scale of individuals, no spatial structure was found in either the whole area of Shandong Province or the area of each sampled county. Although the change of frequencies of the two alleles with geographic locations in Shandong Province both showed gradual increase trends, their changing directions were inverse. The frequency of CCR2-64I allele gradually increased from the southwest to the northeast, while the frequency of SDF1-3'A allele gradually increased from the northeast to the southwest. However the RH to AIDS of combined types of their different genotypes did not represent obvious geographic diversity on the whole area of the Province. Conclusion The frequency of allele usually has some spatial genetic structures or spatial autocorrelation with different spatial distance classes, but the genotypes of individuals have random distribution in the same geographic area. Evaluating spatial distribution of the genetic susceptibility of HIV (AIDS) to CCR2-64I and SDF1-3'A alleles, should focus on the frequencies of combined genotypes of CCR2 and SDF1 based on the two-locus genotypes of each individual rather than the frequencies of CCR2-64I and SDF1-3'A alleles.

  11. Occurrence of Cryptosporidium spp. in Antillean manatees (Trichechus manatus) and Amazonian manatees (Trichechus inunguis) from Brazil.

    Science.gov (United States)

    Borges, Joāo Carlos Gomes; Alves, Leucio Câmara; Faustino, Maria Aparecida da Gloria; Marmontel, Miriam

    2011-12-01

    Infections by Cryptosporidium spp. in aquatic mammals is a major concern due to the possibility of the waterborne transmission of oocysts. The aim of the present study was to report the occurrence of Cryptosporidium spp. in Antillean manatees (Trichechus manatus) and Amazonian manatees (Trichechus inunguis) from Brazil. Fecal samples were collected and processed using Kinyoun's method. Positive samples were also submitted to the direct immunofluorescence test. The results revealed the presence of Cryptosporidium spp. oocysts in 12.5% (17/136) of the material obtained from the Antillean manatees and in 4.3% (05/115) of the samples from the Amazonian manatees. Cryptosporidium spp. infection was more prevalent in captive animals than in free-ranging specimens.

  12. Patterns of energy allocation to reproduction in three Amazonian fish species

    Directory of Open Access Journals (Sweden)

    Rodrigo N. dos Santos

    Full Text Available The study considered the influence of the hydrological cycle and gonadal development on the accumulation and use of energy in three fish species from an Amazonian flooded area. Fishes were sampled over a 24 hour period at monthly intervals between July 2004 and June 2005 using gillnets of different mesh sizes. Body cavity fat and gonadosomatic indices were determined, as well as energy content of gonads and muscles. Amongst the studied species, different means of energy allocation for reproduction were found: Acestrorhynchus falcirostris allocate energy from body cavity fat to its gonads; Pygocentrus nattereri uses mainly energy accumulated in the muscles for the process of gonadal maturation; and Hoplosternum littorale uses energy accumulated in their muscles and body cavity fat for reproductive processes. It is quite clear that the flood pulse regulates the gain and use of the energy reserves in fishes from the Amazonian floodplain.

  13. Phenolic constituents and antioxidant activity of geopropolis from two species of amazonian stingless bees

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Ellen Cristina Costa da; Muniz, Magno Perea; Nunomura, Rita de Cassia Saraiva, E-mail: ellensilva@yahoo.com.br [Departamento de Quimica, Instituto de Ciencias Exatas, Universidade Federal do Amazonas, Manaus, AM (Brazil); Nunomura, Sergio Massayoshi [Departamento de Produtos Naturais, Instituto Nacional de Pesquisas da Amazonia, Manaus, AM (Brazil); Zilse, Gislene Almeida Carvalho [Departamento de Biodiversidade, Instituto Nacional de Pesquisas da Amazonia, Manaus, AM (Brazil)

    2013-09-01

    We investigated the phenolic constituents and antioxidant activity of geopropolis from two species of stingless Amazonian bees, Melipona interrupta and Melipona seminigra. The chemical investigation of geopropolis from Melipona interrupta led to the isolation of 5,7,4'-trihydroxyflavonone, 3,5,6,7,4'-pentahydroxyflavonol, naringenine-4'-O-{beta}-D-glucopyranoside and myricetin-3-O-{beta}-D-glucopyranoside. Their structures were assigned based on spectroscopic analyses, including two-dimensional NMR techniques. Antioxidant activity of methanol and ethanol extracts of M. interrupta and M. seminigra were measured using the 1,2-diphenyl-2-picryl-hydrazyl (DPPH) free radical scavenging assay. This is also the first work reporting the chemical investigation of stingless bee species from the Amazonian region. (author)

  14. Did the martian outflow channels mostly form during the Amazonian Period?

    Science.gov (United States)

    Rodriguez, J. Alexis P.; Platz, Thomas; Gulick, Virginia; Baker, Victor R.; Fairén, Alberto G.; Kargel, Jeffrey; Yan, Jianguo; Miyamoto, Hideaki; Glines, Natalie

    2015-09-01

    Simud, Tiu, and Ares Valles comprise some of the largest outflow channels on Mars. Their excavation has been attributed variously to (or a combination of) erosion by catastrophic floods, glaciers, and debris flows. Numerous investigations indicate that they formed largely during the Late Hesperian (3.61-3.37 Ga). However, these studies mostly equate the ages of the outflow channel floors to those of the flows that generated mesoscale (several hundred meters to a few kilometers) bedforms within them. To improve the statistical accuracy in the age determinations of these flow events, we have used recently acquired high-resolution image and topographic data to map and date portions of Simud, Tiu and Ares Valles, which are extensively marked by these bedforms. Our results, which remove the statistical effects of older and younger outflow channel floor surfaces on the generation of modeled ages, reveal evidence for major outflow channel discharges occurring during the Early (3.37-1.23 Ga) and Middle (1.23-0.328 Ga) Amazonian, with activity significantly peaking during the Middle Amazonian stages. We also find that during the documented stages of Middle Amazonian discharges, the floor of Tiu Valles underwent widespread collapse, resulting in chaotic terrain formation. In addition, we present evidence showing that following the outflow channel discharges, collapse within northern Simud Valles generated another chaotic terrain. This younger chaos region likely represents the latest stage of large-scale outflow channel resurfacing within the study area. Our findings imply that in southern circum-Chryse the martian hydrosphere experienced large-scale drainage during the Amazonian, which likely led to periodic inundation and sedimentation within the northern plains.

  15. Wood decomposition in Amazonian hydropower reservoirs: An additional source of greenhouse gases

    Science.gov (United States)

    Abril, Gwenaël; Parize, Marcelo; Pérez, Marcela A. P.; Filizola, Naziano

    2013-07-01

    Amazonian hydroelectric reservoirs produce abundant carbon dioxide and methane from large quantities of flooded biomass that decompose anaerobically underwater. Emissions are extreme the first years after impounding and progressively decrease with time. To date, only water-to-air fluxes have been considered in these estimates. Here, we investigate in two Amazonian reservoirs (Balbina and Petit Saut) the fate of above water standing dead trees, by combining a qualitative analysis of wood state and density through time and a quantitative analysis of the biomass initially flooded. Dead wood was much more decomposed in the Balbina reservoir 23 years after flooding than in the Petit Saut reservoir 10 years after flooding. Termites apparently played a major role in wood decomposition, occurring mainly above water, and resulting in a complete conversion of this carbon biomass into CO2 and CH4 at a timescale much shorter than reservoir operation. The analysis of pre-impounding wood biomass reveals that above-water decomposition in Amazonian reservoirs is a large, previously unrecognized source of carbon emissions to the atmosphere, representing 26-45% of the total reservoir flux integrated over 100 years. Accounting for both below- and above-water fluxes, we could estimate that each km2 of Amazonian forest converted to reservoir would emit over 140 Gg CO2-eq in 100 years. Hydropower plants in the Amazon should thus generate 0.25-0.4 MW h per km2 flooded area to produce lower greenhouse gas emissions than gas power plants. They also have the disadvantage to emit most of their greenhouse gases the earliest years of operation.

  16. Ritualistic use of the holly Ilex guayusa by Amazonian Jívaro Indians.

    Science.gov (United States)

    Lewis, W H; Kennelly, E J; Bass, G N; Wedner, H J; Elvin-Lewis, M P; Fast, D

    1991-01-01

    In Amazonian Peru and Ecuador leaf decoctions of the rainforest holly Ilex guayusa with high caffeine concentrations are used as a morning stimulant. After daily ingestion, ritualistic vomiting by male Achuar Indians, better known as Jívaros, reduces excessive caffeine intake, so that blood levels of caffeine and biotransformed dimethylxanthines do not cause undesirable CNS and other effects. Emesis is learned and apparently not due to emetic compounds.

  17. Spatial and temporal development of ACCase and ALS resistant Black-grass (Alopecurus myosuroides Huds. populations in neighboring fields in Germany

    Directory of Open Access Journals (Sweden)

    Herrmann, Johannes

    2014-02-01

    Full Text Available The repetitive use of herbicides of a given mode of action as primary tools to control weeds in simplified cropping systems has led to the development of resistant populations. This study reports preliminary results of the infestation level and the herbicide resistance structure of blackgrass (Alopecurus myosuroides Huds. in circa 40 neighboring fields in each of three locations in Southern Germany during 2010-2012. In each location one field with confirmed field resistance served as a starting point to survey the surrounding fields. Field infestation was assessed at the end of the season where seeds were harvested. Based on greenhouse biotests nearly all tested fields showed resistance to ACCase, but the pattern of ACCase mutations and metabolic resistance to fenoxaprop-ethyl showed differences according to space and time. High resistance to ALS was found in several fields in two locations where ALS-resistance was previously confirmed in a single field only leading to severe crop failure. Interestingly, either Pro197 or Trp574 seemed to dominate in these two locations, while almost no ALS target-site mutations were found in the third location. Target-site mutations appear to be the major mechanism for these early cases of ALS-resistance. A few fields also showed non-target site resistant plants to mesosulfuron-methyl. This unique data set provides new insights into the structure and development of 1 an established resistance (ACCase-inhibitors and 2 a developing resistance (ALS-inhibitors. Multivariate analysis including greenhouse biotests data and target-site analyses corresponding to mutations conferring resistance showed that even spatially closely related fields develop different herbicide resistance patterns. This suggests that weed control measures have a major impact within each field and that resistance can evolve independently. In the current situation black-grass infestations can still be controlled in most of the fields. Integrated

  18. Siliceous spicules enhance fracture-resistance and stiffness of pre-colonial Amazonian ceramics

    Science.gov (United States)

    Natalio, Filipe; Corrales, Tomas P.; Wanka, Stephanie; Zaslansky, Paul; Kappl, Michael; Lima, Helena Pinto; Butt, Hans-Jürgen; Tremel, Wolfgang

    2015-08-01

    Pottery was a traditional art and technology form in pre-colonial Amazonian civilizations, widely used for cultural expression objects, utensils and as cooking vessels. Abundance and workability of clay made it an excellent choice. However, inferior mechanical properties constrained their functionality and durability. The inclusion of reinforcement particles is a possible route to improve its resistance to mechanical and thermal damage. The Amazonian civilizations incorporated freshwater tree sponge spicules (cauixí) into the clay presumably to prevent shrinkage and crack propagation during drying, firing and cooking. Here we show that isolated siliceous spicules are almost defect-free glass fibres with exceptional mechanical stability. After firing, the spicule Young’s modulus increases (from 28 ± 5 GPa to 46 ± 8 GPa) inferring a toughness increment. Laboratory-fabricated ceramic models containing different inclusions (sand, glass-fibres, sponge spicules) show that mutually-oriented siliceous spicule inclusions prevent shrinkage and crack propagation leading to high stiffness clays (E = 836 ± 3 MPa). Pre-colonial amazonian potters were the first civilization known to employ biological materials to generate composite materials with enhanced fracture resistance and high stiffness in the history of mankind.

  19. Controls of Nazca ridge subduction on the Amazonian foreland basin geometry

    Science.gov (United States)

    Espurt, N.; Baby, P.; Brusset, S.; Roddaz, M.; Hermoza, W.; Regard, V.; Martinod, J.; Bolaños, R.

    2006-12-01

    In the central Andes, the Nazca ridge subduction imprints can be tracked on the eastern side of the Andes. The western part of the Amazonian basin is currently an atypical foreland basin because the Amazonian foreland basin 3-D geometry does not follow the foreland basin system model of DeCelles and Giles [1]. The Amazonian foreland basin consists of two main subsiding basins separated by the NE-SW trending structural/morphologic Fitzcarrald Arch. Geomorphic and lithospheric data provide evidence that the large wavelength Fitzcarrald Arch uplift at 750 kilometers ahead of the trench results from the Nazca ridge flat subduction. The flexure of the South American lithosphere is overcompensated by the buoyancy of the Nazca ridge impeaching a four-component foreland basin system. The recent deformations of the Amazon basin are characterized by vertical motions as recorded by the radial modern drainage network and the deformation of Pliocene to recent fluvial deposits on both sides of the arch, according to the kinematics of the Nazca ridge subduction. In addition, analogue lithospheric experiments similarly show that the ridge buoyancy induces uplift above the flat-slab segment in the foreland basin separating two subsiding sub-basins resulting from the flexure of the continental lithosphere. [1] DeCelles, P.G., and Giles, K.A.(1996)Foreland basin systems: Basin Research, 8, 105-123.

  20. Spatial Amphibian Impact Assessment – a management tool for assessment of road effects on regional populations of Moor frogs (Rana arvalis)

    DEFF Research Database (Denmark)

    Pontoppidan, Maj-Britt; Nachman, Gøsta Støger

    2013-01-01

    on observed frog populations in the survey area. The dispersal of juvenile frogs is simulated by means of individual-based modelling, while a population-based model is used for simulating population dynamics. In combination the two types of models generate output on landscape connectivity and population...

  1. Energetic planning in isolated Amazonian communities using geographical information system; Planejamento energetico em regioes isoladas da Amazonia utilizando sistemas de informacoes geograficas

    Energy Technology Data Exchange (ETDEWEB)

    Almeida, Arthur [Universidade Federal do Para (UFPA), Belem, PA (Brazil). Programa de Pos-Graduacao de Engenharia Eletrica; Rocha, Brigida R.P.; Monteiro, Jose H.A.; Gaspar, Gabriella C.M. [Universidade Federal do Para (UFPA), Belem, PA (Brazil). Dept. de Engenharia Eletrica e de Computacao; Aarao Junior, Raimundo N.N. [Universidade Federal do Para (UFPA), Belem, PA (Brazil). Dept. de Engenharia Mecanica

    2004-07-01

    This paper proposes a system of electric planning in isolated Amazonian communities. For those communities, we propose the use of decentralized systems of electric energy with biomass as fuel. We also propose a computer system of electric planning with geographical information systems for its facilities of integrating geographical information, so useful in an Amazonian context. (author)

  2. The Research on the Spatial Distribution and the Evolution Trend of Population Migration in Shaoxing%绍兴人口流动的空间分布以及演变趋势研究

    Institute of Scientific and Technical Information of China (English)

    李小明

    2016-01-01

    本文通过分析绍兴人口空间分布特征及其形成原因,在此基础上对人口流动的演变趋势进行预测分析,研究表明:绍兴市人口密度中长期将呈现缓慢增长趋势,且流动人口的增长速率高于户籍人口的增长速率,特别是越城区、柯桥区成为流动人口的主要聚集地。同时,结合影响人口空间分布的主要因素,认为加强协调区域经济发展、优化公共资源配置、增强城市服务功能等措施,有利于科学调控人口规模和结构,促进人口与经济协调发展。%The spatial distribution of Shaoxing population characteristics and its causes are analyzed in this paper, and the evolution trends of population migration are forecasted, the research show that long-term population density of Shaoxing city will show a slow growth trend, and the growth rate of the floating population is higher than that of household population. Especially, Yuecheng district and Keqiao district become the major migrants gathering. Meanwhile, we analyze the main factors affecting the spatial distribution of the population and consider the measures such as strengthening coordinated regional economic development, optimizing the allocation of public resources, and enhancing city services conducive to scientifically control population size and structure, promote the coordinated development of population and economy.

  3. Spatial and temporal population genetic structure of four northeastern Pacific littorinid gastropods: the effect of mode of larval development on variation at one mitochondrial and two nuclear DNA markers.

    Science.gov (United States)

    Lee, Hyuk Je; Boulding, Elizabeth G

    2009-05-01

    We investigated the effect of development mode on the spatial and temporal population genetic structure of four littorinid gastropod species. Snails were collected from the same three sites on the west coast of Vancouver Island, Canada in 1997 and again in 2007. DNA sequences were obtained for one mitochondrial gene, cytochrome b (Cyt b), and for up to two nuclear genes, heat shock cognate 70 (HSC70) and aminopeptidase N intron (APN54). We found that the mean level of genetic diversity and long-term effective population sizes (N(e)) were significantly greater for two species, Littorina scutulata and L. plena, that had a planktotrophic larval stage than for two species, Littorina sitkana and L. subrotundata, that laid benthic egg masses which hatched directly into crawl-away juveniles. Predictably, two poorly dispersing species, L. sitkana and L. subrotundata, showed significant spatial genetic structure at an 11- to 65-km geographical scale that was not observed in the two planktotrophic species. Conversely, the two planktotrophic species had more temporal genetic structure over a 10-year interval than did the two direct-developing species and showed highly significant temporal structure for spatially pooled samples. The greater temporal genetic variation of the two planktotrophic species may have been caused by their high fecundity, high larval dispersal, and low but spatially correlated early survivorship. The sweepstakes-like reproductive success of the planktotrophic species could allow a few related females to populate hundreds of kilometres of coastline and may explain their substantially larger temporal genetic variance but lower spatial genetic variance relative to the direct-developing species.

  4. Colour forms of Amazonian cichlid fish represent reproductively isolated species.

    Science.gov (United States)

    Ready, J S; Sampaio, I; Schneider, H; Vinson, C; Dos Santos, T; Turner, G F

    2006-07-01

    Laboratory mate choice experiments have confirmed species status for cichlid fish in the African Great Lakes that differ in colour and little else. Colour differences between allopatric populations of the South American cichlid genus Apistogramma are known for many species, yet the status of such populations has not been previously tested. Analysis of the genetic relationships and mate choice characteristics of populations previously described as Apistogramma caetei from eastern Amazonia indicates genetic differentiation into at least three allopatric lineages, which also show strong prezygotic isolation through female mate choice, confirming them as Biological species. If future studies confirm that this result is indicative of a general trend, the species richness of the South American cichlid fishes may presently be seriously underestimated.

  5. Characterization of 10 microsatellite markers for the understorey Amazonian herb Heliconia acuminata.

    Science.gov (United States)

    Côrtes, M C; Gowda, V; Kress, W J; Bruna, E M; Uriarte, M

    2009-07-01

    We characterized 10 microsatellite loci for the plant Heliconia acuminata from the Biological Dynamics of Forest Fragments Project (Manaus, Brazil). Markers were screened in 61 individuals from one population and were found to be polymorphic with an average of eight alleles per locus. We found moderate to high levels of polymorphic information content, and observed and expected heterozygosities. All 10 markers are suitable for spatial genetic structure and parentage analyses and will be used for understanding H. acuminata dynamics across a fragmented landscape.

  6. The Spatial Evolution and Formation Mechanism of Population Density in Lanzhou City Over the Past 30 Years%近30年来兰州市人口密度空间演变及其形成机制

    Institute of Scientific and Technical Information of China (English)

    张志斌; 潘晶; 李小虎

    2013-01-01

    Base on the demographic data at a district level, the article analyzed the spatial evolution of population density in Lanzhou in recent 30 years, by a comprehensive application of software ArcGIS and GS+Ver-sion7. The result shows that: 1) in the evolution of spatial pattern in population density of Lanzhou, with the growth of spatial distance, the positive correlation of population density was gradually weakening and the negative correlation was gradually strengthening in 1982-2009. The spatial autocorrelation range has been continuously increased. The influence coverage of the high density area on the low density area has been increasing year by year. The random elements that arouse the spatial difference in population density are increasing continuously, and structure differentiation that space correlation causes is more and more outstanding. The region-al difference in population density distribution was enlarging as a whole. It can be predicted that, in the near future, the difference remains and in a short term there will no any great changes. This illustrates that population distribution in Lanzhou is always in an imbalanced state. 2) From the changes of population density gravity in different years, it can be seen that, the population distribution is partially on the east. The tendency of space pattern in population distribution shows its regularity, wh