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Sample records for alternative reading frames

  1. ["Matreshka" Genes with Alternative Reading Frames].

    Science.gov (United States)

    Sheshukova, E V; Shindyapina, A V; Komarova, T V; Dorokhov, Yu L

    2016-02-01

    Although a relatively small part of the human genome contains protein encoding genes, the latest data on the discovery of alternative open reading frames (ORFs) in conventional mRNAs has highlighted the expanded coding potential of these genes. Until recently, it was believed that each mRNA transcript encodes a single protein. Recent proteogenomics data indicate the existence of exceptions to this rule, which greatly changes the usual meaning of the term "gene". The topology of a gene with overlapping ORFs resembles a Russian "matreshka" toy. There are two levels of "matreshka" genetic systems. First, the chromosomal level, when the "nested" gene is located within introns and exons of the main chromosomal gene, both in the sense and antisense orientation relative to the external gene. The second level is a mature mRNA molecule containing overlapping ORFs or an ORF with an alternative-start codon. In this review we will focus on the properties of "matreshka" genes of the second type and methods for their detection and verification. Particular attention is paid to the biological properties of the polypeptides encoded by these genes. PMID:27215029

  2. Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation

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    Chuang Trees-Juen

    2007-09-01

    Full Text Available Abstract Background Alternative splicing (AS has been regarded capable of altering selection pressure on protein subsequences. Particularly, the frequency of reading frame preservation (FRFP, as a measure of selection pressure, has been reported to be higher in alternatively spliced exons (ASEs than in constitutively spliced exons (CSEs. However, recently it has been reported that different ASE types – simple and complex ASEs – may be subject to opposite selection forces. Therefore, it is necessary to re-evaluate the evolutionary effects of such splicing patterns on frame preservation. Results Here we show that simple and complex ASEs, respectively, have higher and lower FRFPs than CSEs. Since complex ASEs may alter the ends of their flanking exons, the selection pressure on frame preservation is likely relaxed in this ASE type. Furthermore, conservation of the ASE/CSE splicing pattern increases the FRFPs of simple ASEs but decreases those of complex ASEs. Contrary to the well-recognized concept of strong selection pressure on conserved ASEs for protein reading frame preservation, our results show that conserved complex ASEs are relaxed from such pressure and the frame-disrupting effect caused by the insertion of complex ASEs can be offset by compensatory changes in their flanking exons. Conclusion In this study, we find that simple and complex ASEs undergo opposite selection pressure for protein reading frame preservation, with CSEs in-between. Simple ASEs have much higher FRFPs than complex ones. We further find that the FRFPs of complex ASEs coupled with flanking exons are close to those of simple ASEs, indicating that neighboring exons of an ASE may evolve in a coordinated way to avoid protein dysfunction. Therefore, we suggest that evolutionary analyses of AS should take into consideration the effects of different splicing patterns and the joint effects of multiple AS events.

  3. Value of T cell receptor gamma alternate reading frame protein and keratin 5 in endometrial carcinoma

    Institute of Scientific and Technical Information of China (English)

    ZHAO Li-jun; LI Xiao-ping; QI Wen-juan; WANG Jian-liu; WEI Li-hui

    2013-01-01

    Background Tumors with different gene expression develop and progress in different ways.To deepen our understanding of the progression in endometrial cancer,and provide a useful tool for accurate diagnosis and prognosis assessment,we identified the new molecular prognostic markers in endometrial carcinoma and analyzed the relationship of them with clinical and pathological features of endometrial carcinoma.Methods Ninety-four cases of endometrial endometrioid adenocarcinoma with complete data from the Peking University People's Hospital from 2000 to 2008 and 40 cases of normal endometrium were enrolled.Among these,30 endometrial endometrioid adenocarcinoma samples of different International Federation of Gynecology and Obstetrics (FIGO) stage were selected for further Agilent genome-wide microarray analysis.Significance analysis of microarrays (SAM) was used to identify genes that are significantly associated with tumor progress.Immunohistochemistry was utilized to identify the genes of interest in endometrial carcinoma and normal endometrium.The relationship between the genes and the age,clinical stage,histological grade,myometrium invaded depth,lymph node metastasis status,and the expression of ER,PR,P53,and PTEN were analyzed by x2 test.Results Analysis between FIGO 1988 stage Ⅰ and stage Ⅲ identified a 362-gene "progress signature"; 171 downregulated and 191 up-regulated genes.Among the alterative genes,TARP (T cell receptor gamma alternate reading frame protein) and KRT5 (keratin 5) decreased 3.57 fold and 5.8 fold in FIGO stage Ⅲ patients.The expression of TARP in endometrial carcinoma increased compared to normal endometrium,while that of KRT5 decreased (P<0.05).The expression of TARP and KRT5 decreased when stage,histological grading,myometrium invaded depth increased (P<0.05).In the cases with lymph node metastasis,the expression of TARP decreased,while the expression of KRT5 did not differ (both P<0.05) both.The expression of P53 had a

  4. Norovirus regulation of the innate immune response and apoptosis occurs via the product of the alternative open reading frame 4.

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    Nora McFadden

    2011-12-01

    Full Text Available Small RNA viruses have evolved many mechanisms to increase the capacity of their short genomes. Here we describe the identification and characterization of a novel open reading frame (ORF4 encoded by the murine norovirus (MNV subgenomic RNA, in an alternative reading frame overlapping the VP1 coding region. ORF4 is translated during virus infection and the resultant protein localizes predominantly to the mitochondria. Using reverse genetics we demonstrated that expression of ORF4 is not required for virus replication in tissue culture but its loss results in a fitness cost since viruses lacking the ability to express ORF4 restore expression upon repeated passage in tissue culture. Functional analysis indicated that the protein produced from ORF4 antagonizes the innate immune response to infection by delaying the upregulation of a number of cellular genes activated by the innate pathway, including IFN-Beta. Apoptosis in the RAW264.7 macrophage cell line was also increased during virus infection in the absence of ORF4 expression. In vivo analysis of the WT and mutant virus lacking the ability to express ORF4 demonstrated an important role for ORF4 expression in infection and virulence. STAT1-/- mice infected with a virus lacking the ability to express ORF4 showed a delay in the onset of clinical signs when compared to mice infected with WT virus. Quantitative PCR and histopathological analysis of samples from these infected mice demonstrated that infection with a virus not expressing ORF4 results in a delayed infection in this system. In light of these findings we propose the name virulence factor 1, VF1 for this protein. The identification of VF1 represents the first characterization of an alternative open reading frame protein for the calicivirus family. The immune regulatory function of the MNV VF1 protein provide important perspectives for future research into norovirus biology and pathogenesis.

  5. Hepatitis C Virus Frameshift/Alternate Reading Frame Protein Suppresses Interferon Responses Mediated by Pattern Recognition Receptor Retinoic-Acid-Inducible Gene-I.

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    Seung Bum Park

    Full Text Available Hepatitis C virus (HCV actively evades host interferon (IFN responses but the mechanisms of how it does so are not completely understood. In this study, we present evidence for an HCV factor that contributes to the suppression of retinoic-acid-inducible gene-I (RIG-I-mediated IFN induction. Expression of frameshift/alternate reading frame protein (F/ARFP from HCV -2/+1 frame in Huh7 hepatoma cells suppressed type I IFN responses stimulated by HCV RNA pathogen-associated molecular pattern (PAMP and poly(IC. The suppression occurred independently of other HCV factors; and activation of interferon stimulated genes, TNFα, IFN-λ1, and IFN-λ2/3 was likewise suppressed by HCV F/ARFP. Point mutations in the full-length HCV sequence (JFH1 genotype 2a strain were made to introduce premature termination codons in the -2/+1 reading frame coding for F/ARFP while preserving the original reading frame, which enhanced IFNα and IFNβ induction by HCV. The potentiation of IFN response by the F/ARFP mutations was diminished in Huh7.5 cells, which already have a defective RIG-I, and by decreasing RIG-I expression in Huh7 cells. Furthermore, adding F/ARFP back via trans-complementation suppressed IFN induction in the F/ARFP mutant. The F/ARFP mutants, on the other hand, were not resistant to exogenous IFNα. Finally, HCV-infected human liver samples showed significant F/ARFP antibody reactivity, compared to HCV-uninfected control livers. Therefore, HCV F/ARFP likely cooperates with other viral factors to suppress type I and III IFN induction occurring through the RIG-I signaling pathway. This study identifies a novel mechanism of pattern recognition receptor modulation by HCV and suggests a biological function of the HCV alternate reading frame in the modulation of host innate immunity.

  6. Hepatitis C Virus Frameshift/Alternate Reading Frame Protein Suppresses Interferon Responses Mediated by Pattern Recognition Receptor Retinoic-Acid-Inducible Gene-I

    Science.gov (United States)

    Park, Seung Bum; Seronello, Scott; Mayer, Wasima; Ojcius, David M.

    2016-01-01

    Hepatitis C virus (HCV) actively evades host interferon (IFN) responses but the mechanisms of how it does so are not completely understood. In this study, we present evidence for an HCV factor that contributes to the suppression of retinoic-acid-inducible gene-I (RIG-I)-mediated IFN induction. Expression of frameshift/alternate reading frame protein (F/ARFP) from HCV -2/+1 frame in Huh7 hepatoma cells suppressed type I IFN responses stimulated by HCV RNA pathogen-associated molecular pattern (PAMP) and poly(IC). The suppression occurred independently of other HCV factors; and activation of interferon stimulated genes, TNFα, IFN-λ1, and IFN-λ2/3 was likewise suppressed by HCV F/ARFP. Point mutations in the full-length HCV sequence (JFH1 genotype 2a strain) were made to introduce premature termination codons in the -2/+1 reading frame coding for F/ARFP while preserving the original reading frame, which enhanced IFNα and IFNβ induction by HCV. The potentiation of IFN response by the F/ARFP mutations was diminished in Huh7.5 cells, which already have a defective RIG-I, and by decreasing RIG-I expression in Huh7 cells. Furthermore, adding F/ARFP back via trans-complementation suppressed IFN induction in the F/ARFP mutant. The F/ARFP mutants, on the other hand, were not resistant to exogenous IFNα. Finally, HCV-infected human liver samples showed significant F/ARFP antibody reactivity, compared to HCV-uninfected control livers. Therefore, HCV F/ARFP likely cooperates with other viral factors to suppress type I and III IFN induction occurring through the RIG-I signaling pathway. This study identifies a novel mechanism of pattern recognition receptor modulation by HCV and suggests a biological function of the HCV alternate reading frame in the modulation of host innate immunity. PMID:27404108

  7. Alternate reading frame protein (F protein of hepatitis C virus: paradoxical effects of activation and apoptosis on human dendritic cells lead to stimulation of T cells.

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    Subodh Kumar Samrat

    Full Text Available Hepatitis C virus (HCV leads to chronic infection in the majority of infected individuals due to lack, failure, or inefficiency of generated adaptive immune responses. In a minority of patients, acute infection is followed by viral clearance. The immune correlates of viral clearance are not clear yet but have been extensively investigated, suggesting that multispecific and multifunctional cellular immunity is involved. The generation of cellular immunity is highly dependent upon how antigen presenting cells (APCs process and present various viral antigens. Various structural and non-structural HCV proteins derived from the open reading frame (ORF have been implicated in modulation of dendritic cells (DCs and APCs. Besides the major ORF proteins, the HCV core region also encodes an alternate reading frame protein (ARFP or F, whose function in viral pathogenesis is not clear. In the current studies, we sought to determine the role of HCV-derived ARFP in modulating dendritic cells and stimulation of T cell responses. Recombinant adenovirus vectors containing F or core protein derived from HCV (genotype 1a were prepared and used to endogenously express these proteins in dendritic cells. We made an intriguing observation that endogenous expression of F protein in human DCs leads to contrasting effects on activation and apoptosis of DCs, allowing activated DCs to efficiently internalize apoptotic DCs. These in turn result in efficient ability of DCs to process and present antigen and to prime and stimulate F protein derived peptide-specific T cells from HCV-naive individuals. Taken together, our findings suggest important aspects of F protein in modulating DC function and stimulating T cell responses in humans.

  8. Fine mapping of the latency-related gene of herpes simplex virus type 1: alternative splicing produces distinct latency-related RNAs containing open reading frames

    International Nuclear Information System (INIS)

    The latency-related (LR) gene of herpes simplex virus type 1 (HSV-1) is transcriptionally active during HSV-1 latency, producing at least two LR-RNAs. The LR gene partially overlaps the immediate-early gene ICP0 and is transcribed in the opposite direction from ICP0, producing LR-RNAs that are complementary (antisense) to ICP0 mRNA. The LR gene is thought to be involved in HSV-1 latency. The authors report here the time mapping and partial sequence analysis of this HSV-1 LR gene. 32P-labeled genomic DNA restriction fragments and synthetic oligonucleotides were used as probes for in situ hybridizations and Northern (RNA) blot hybridizations of RNA from trigeminal ganglia of rabbits latently infected with HSV-1. The two most abundant LR-RNAs appeared to share their 5' and 3' ends and to be produced by alternative splicing. These LR-RNAs were approximately 2 and 1.3 to 1.5 kilobases in length and were designated LR-RNA 1 and LF-RNA 2, respectively. LR-RNA 1 appeared to have at least one intron removed, while LR-RNA 2 appeared to have at least two introns removed. The LR-RNAs contained two potential long open reading frames, suggesting the possibility that one or more of the LR-RNAs may be a functional mRNA

  9. Predicting statistical properties of open reading frames in bacterial genomes.

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    Katharina Mir

    Full Text Available An analytical model based on the statistical properties of Open Reading Frames (ORFs of eubacterial genomes such as codon composition and sequence length of all reading frames was developed. This new model predicts the average length, maximum length as well as the length distribution of the ORFs of 70 species with GC contents varying between 21% and 74%. Furthermore, the number of annotated genes is predicted with high accordance. However, the ORF length distribution in the five alternative reading frames shows interesting deviations from the predicted distribution. In particular, long ORFs appear more often than expected statistically. The unexpected depletion of stop codons in these alternative open reading frames cannot completely be explained by a biased codon usage in the +1 frame. While it is unknown if the stop codon depletion has a biological function, it could be due to a protein coding capacity of alternative ORFs exerting a selection pressure which prevents the fixation of stop codon mutations. The comparison of the analytical model with bacterial genomes, therefore, leads to a hypothesis suggesting novel gene candidates which can now be investigated in subsequent wet lab experiments.

  10. Selecting Open Reading Frames From DNA

    OpenAIRE

    Zacchi, Paola; Sblattero, Daniele; Florian, Fiorella; Marzari, Roberto; Bradbury, Andrew R. M.

    2003-01-01

    We describe a method to select DNA encoding functional open reading frames (ORFs) from noncoding DNA within the context of a specific vector. Phage display has been used as an example, but any system requiring DNA encoding protein fragments, for example, the yeast two-hybrid system, could be used. By cloning DNA fragments upstream of a fusion gene, consisting of the β-lactamase gene flanked by lox recombination sites, which is, in turn, upstream of gene 3 from fd phage, only those clones cont...

  11. West Nile alternative open reading frame (N-NS4B/WARF4 is produced in infected West Nile Virus (WNV cells and induces humoral response in WNV infected individuals

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    Faggioni Giovanni

    2012-11-01

    Full Text Available Abstract Background West Nile Virus (WNV is a flavivirus that requires an efficient humoral and cellular host response for the control of neuroinvasive infection. We previously reported the existence of six alternative open reading frame proteins in WNV genome, one of which entitled WARF4 is exclusively restricted to the lineage I of the virus. WARF4 is able to elicit antibodies in WNV infected horses; however, there was no direct experimental proof of the existence of this novel protein. The purpose of this study was to demonstrate the in vitro production of WARF4 protein following WNV infection of cultured VERO cells and its immunity in WNV infected individuals. Results We produced a monoclonal antibody against WARF4 protein (MAb 3A12 which detected the novel protein in WNV lineage I-infected, cultured VERO cells while it did not react with WNV lineage II infected cells. MAb 3A12 specificity to WARF4 protein was confirmed by its reactivity to only one peptide among four analyzed that cover the full WARF4 amino acids sequence. In addition, WARF4 protein was expressed in the late phase of WNV lineage I infection. Western blotting and bioinformatics analyses strongly suggest that the protein could be translated by programmed −1 ribosomal frameshifting process. Since WARF4 is embedded in the NS4B gene, we rename this novel protein N-NS4B/WARF4. Furthermore, serological analysis shows that N-NS4B/WARF4 is able to elicit antibodies in WNV infected individuals. Conclusions N-NS4B/WARF4 is the second Alternative Reading Frame (ARF protein that has been demonstrated to be produced following WNV infection and might represent a novel tool for a better characterization of immune response in WNV infected individuals. Further serological as well as functional studies are required to characterize the function of the N-NS4B/WARF4 protein. Since the virus might actually make an extensive use of ARFs, it appears important to investigate the novel six ARF

  12. Open reading frame phylogenetic analysis on the cloud.

    Science.gov (United States)

    Hung, Che-Lun; Lin, Chun-Yuan

    2013-01-01

    Phylogenetic analysis has become essential in researching the evolutionary relationships between viruses. These relationships are depicted on phylogenetic trees, in which viruses are grouped based on sequence similarity. Viral evolutionary relationships are identified from open reading frames rather than from complete sequences. Recently, cloud computing has become popular for developing internet-based bioinformatics tools. Biocloud is an efficient, scalable, and robust bioinformatics computing service. In this paper, we propose a cloud-based open reading frame phylogenetic analysis service. The proposed service integrates the Hadoop framework, virtualization technology, and phylogenetic analysis methods to provide a high-availability, large-scale bioservice. In a case study, we analyze the phylogenetic relationships among Norovirus. Evolutionary relationships are elucidated by aligning different open reading frame sequences. The proposed platform correctly identifies the evolutionary relationships between members of Norovirus. PMID:23671843

  13. Open Reading Frame Phylogenetic Analysis on the Cloud

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    Che-Lun Hung

    2013-01-01

    Full Text Available Phylogenetic analysis has become essential in researching the evolutionary relationships between viruses. These relationships are depicted on phylogenetic trees, in which viruses are grouped based on sequence similarity. Viral evolutionary relationships are identified from open reading frames rather than from complete sequences. Recently, cloud computing has become popular for developing internet-based bioinformatics tools. Biocloud is an efficient, scalable, and robust bioinformatics computing service. In this paper, we propose a cloud-based open reading frame phylogenetic analysis service. The proposed service integrates the Hadoop framework, virtualization technology, and phylogenetic analysis methods to provide a high-availability, large-scale bioservice. In a case study, we analyze the phylogenetic relationships among Norovirus. Evolutionary relationships are elucidated by aligning different open reading frame sequences. The proposed platform correctly identifies the evolutionary relationships between members of Norovirus.

  14. [Alternatives for Reading Teacher Educator Education].

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    Palmatier, Robert A., Ed.

    1976-01-01

    The "Epistle" is the publication forum of Professors of Reading Teacher Educators, a special-interest group of the International Reading Association. The topic considered in this issue is alternatives or positive approaches for dealing with current concerns in graduate education in reading. In "Speculations on the Management of Retrenchment in…

  15. The canonical and alternate duals of a wavelet frame

    DEFF Research Database (Denmark)

    Bownik, Marcin; Lemvig, Jakob

    We show that there exists a frame wavelet $\\psi$ with fast decay in the time domain and compact support in the frequency domain generating a wavelet system whose canonical dual frame cannot be generated by an arbitrary number of generators. On the other hand, there exists infinitely many alternate...

  16. The canonical and alternate duals of a wavelet frame

    DEFF Research Database (Denmark)

    Lemvig, Jakob; Bownik, Marcin

    2007-01-01

    We show that there exists a frame wavelet ψ with fast decay in the time domain and compact support in the frequency domain generating a wavelet system whose canonical dual frame cannot be generated by an arbitrary number of generators. On the other hand, there exists infinitely many alternate duals...

  17. A Probabilistic Genome-Wide Gene Reading Frame Sequence Model

    DEFF Research Database (Denmark)

    Have, Christian Theil; Mørk, Søren

    using the probabilistic logic programming language and machine learning system PRISM - a fast and efficient model prototyping environment, using bacterial gene finding performance as a benchmark of signal strength. The model is used to prune a set of gene predictions from an underlying gene finder...... and are evaluated by the effect on prediction performance. Since bacterial gene finding to a large extent is a solved problem it forms an ideal proving ground for evaluating the explicit modeling of larger scale gene sequence composition of genomes. We conclude that the sequential composition of gene reading frames......We introduce a new type of probabilistic sequence model, that model the sequential composition of reading frames of genes in a genome. Our approach extends gene finders with a model of the sequential composition of genes at the genome-level -- effectively producing a sequential genome annotation...

  18. Upstream open reading frames: Molecular switches in (patho)physiology

    OpenAIRE

    Wethmar, Klaus; Smink, Jeske J.; Leutz, Achim

    2010-01-01

    Conserved upstream open reading frames (uORFs) are found within many eukaryotic transcripts and are known to regulate protein translation. Evidence from genetic and bioinformatic studies implicates disturbed uORF-mediated translational control in the etiology of human diseases. A genetic mouse model has recently provided proof-of-principle support for the physiological relevance of uORF-mediated translational control in mammals. The targeted disruption of the uORF initiation codon within the ...

  19. Oscillating Evolution of a Mammalian Locus with Overlapping Reading Frames: An XLalphas/ALEX Relay.

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    2005-08-01

    Full Text Available XLalphas and ALEX are structurally unrelated mammalian proteins translated from alternative overlapping reading frames of a single transcript. Not only are they encoded by the same locus, but a specific XLalphas/ALEX interaction is essential for G-protein signaling in neuroendocrine cells. A disruption of this interaction leads to abnormal human phenotypes, including mental retardation and growth deficiency. The region of overlap between the two reading frames evolves at a remarkable speed: the divergence between human and mouse ALEX polypeptides makes them virtually unalignable. To trace the evolution of this puzzling locus, we sequenced it in apes, Old World monkeys, and a New World monkey. We show that the overlap between the two reading frames and the physical interaction between the two proteins force the locus to evolve in an unprecedented way. Namely, to maintain two overlapping protein-coding regions the locus is forced to have high GC content, which significantly elevates its intrinsic evolutionary rate. However, the two encoded proteins cannot afford to change too quickly relative to each other as this may impair their interaction and lead to severe physiological consequences. As a result XLalphas and ALEX evolve in an oscillating fashion constantly balancing the rates of amino acid replacements. This is the first example of a rapidly evolving locus encoding interacting proteins via overlapping reading frames, with a possible link to the origin of species-specific neurological differences.

  20. Framing effects in reading: an fMRI study

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    Laura Danelli

    2014-04-01

    Anatomofunctional results (Figure 1 showed that the left occipital, the anterior and posterior temporal regions, and the left intraparietal sulcus were specifically activated when reading targets in a lexical frame. The left posterior inferior temporal and inferior parietal regions were activated in sublexical condition. Finally, reading along the two routes commonly activated the Visual Word Form Area, the premotor cortex, the left frontal areas and the left SMA, suggesting an involvement of these regions in early-input (early orthographic processing and late-output processes (phonological output buffer and articulatory programming. Conclusions: These results represent a new fine-grained description of the neurofunctional correlates of the dual route model partially supporting the recent anatomical investigations in patients with specific forms of acquired dyslexia (Ripamonti, Aggujaro, Molteni, Zonca, Ghirardi, & Luzzatti, 2014.

  1. Upstream open reading frames: Molecular switches in (patho)physiology

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    Wethmar, Klaus; Smink, Jeske J; Leutz, Achim

    2010-01-01

    Conserved upstream open reading frames (uORFs) are found within many eukaryotic transcripts and are known to regulate protein translation. Evidence from genetic and bioinformatic studies implicates disturbed uORF-mediated translational control in the etiology of human diseases. A genetic mouse model has recently provided proof-of-principle support for the physiological relevance of uORF-mediated translational control in mammals. The targeted disruption of the uORF initiation codon within the transcription factor CCAAT/enhancer binding protein β (C/EBPβ) gene resulted in deregulated C/EBPβ protein isoform expression, associated with defective liver regeneration and impaired osteoclast differentiation. The high prevalence of uORFs in the human transcriptome suggests that intensified search for mutations within 5′ RNA leader regions may reveal a multitude of alterations affecting uORFs, causing pathogenic deregulation of protein expression. PMID:20726009

  2. Predicting functional upstream open reading frames in Saccharomyces cerevisiae

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    Kristiansson Erik

    2009-12-01

    Full Text Available Abstract Background Some upstream open reading frames (uORFs regulate gene expression (i.e., they are functional and can play key roles in keeping organisms healthy. However, how uORFs are involved in gene regulation is not yet fully understood. In order to get a complete view of how uORFs are involved in gene regulation, it is expected that a large number of experimentally verified functional uORFs are needed. Unfortunately, wet-experiments to verify that uORFs are functional are expensive. Results In this paper, a new computational approach to predicting functional uORFs in the yeast Saccharomyces cerevisiae is presented. Our approach is based on inductive logic programming and makes use of a novel combination of knowledge about biological conservation, Gene Ontology annotations and genes' responses to different conditions. Our method results in a set of simple and informative hypotheses with an estimated sensitivity of 76%. The hypotheses predict 301 further genes to have 398 novel functional uORFs. Three (RPC11, TPK1, and FOL1 of these 301 genes have been hypothesised, following wet-experiments, by a related study to have functional uORFs. A comparison with another related study suggests that eleven of the predicted functional uORFs from genes LDB17, HEM3, CIN8, BCK2, PMC1, FAS1, APP1, ACC1, CKA2, SUR1, and ATH1 are strong candidates for wet-lab experimental studies. Conclusions Learning based prediction of functional uORFs can be done with a high sensitivity. The predictions made in this study can serve as a list of candidates for subsequent wet-lab verification and might help to elucidate the regulatory roles of uORFs.

  3. Systematic Cloning of Treponema pallidum Open Reading Frames for Protein Expression and Antigen Discovery

    OpenAIRE

    McKevitt, Matthew; Patel, Krupa; Smajs, David; Marsh, Michael; McLoughlin, Melanie; Norris, Steven J; Weinstock, George M.; Palzkill, Timothy

    2003-01-01

    A topoisomerase-based method was used to clone PCR products encoding 991 of the 1041 open reading frames identified in the genome sequence of the bacterium that causes syphilis, Treponema pallidum subsp. pallidum. Cloning the open reading frames into the univector plasmid system permitted the rapid conversion of the original clone set to other functional vectors containing a variety of promoters or tag sequences. A computational prediction of signal sequences identifie...

  4. DNA vaccination of pigs with open reading frame 1-7 of PRRS virus

    DEFF Research Database (Denmark)

    Barfoed, Annette Malene; Blixenkrone-Møller, Merete; Jensen, Merethe Holm;

    2004-01-01

    We cloned all open reading frames of a Danish isolate of porcine reproductive and respiratory syndrome (PRRS) virus in DNA vaccination vectors. Pigs were vaccinated using a gene gun with each single construct (ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, or ORF7) or combinations thereof. Vaccination...

  5. Short-read reading-frame predictors are not created equal: sequence error causes loss of signal

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    Trimble William L

    2012-07-01

    Full Text Available Abstract Background Gene prediction algorithms (or gene callers are an essential tool for analyzing shotgun nucleic acid sequence data. Gene prediction is a ubiquitous step in sequence analysis pipelines; it reduces the volume of data by identifying the most likely reading frame for a fragment, permitting the out-of-frame translations to be ignored. In this study we evaluate five widely used ab initio gene-calling algorithms—FragGeneScan, MetaGeneAnnotator, MetaGeneMark, Orphelia, and Prodigal—for accuracy on short (75–1000 bp fragments containing sequence error from previously published artificial data and “real” metagenomic datasets. Results While gene prediction tools have similar accuracies predicting genes on error-free fragments, in the presence of sequencing errors considerable differences between tools become evident. For error-containing short reads, FragGeneScan finds more prokaryotic coding regions than does MetaGeneAnnotator, MetaGeneMark, Orphelia, or Prodigal. This improved detection of genes in error-containing fragments, however, comes at the cost of much lower (50% specificity and overprediction of genes in noncoding regions. Conclusions Ab initio gene callers offer a significant reduction in the computational burden of annotating individual nucleic acid reads and are used in many metagenomic annotation systems. For predicting reading frames on raw reads, we find the hidden Markov model approach in FragGeneScan is more sensitive than other gene prediction tools, while Prodigal, MGA, and MGM are better suited for higher-quality sequences such as assembled contigs.

  6. A novel read-out IC allowing microbolometers to operate with high frame rate

    Science.gov (United States)

    Zhou, Yun; Lv, Jian; Wang, LuXia; Que, LongCheng; Jiang, YaDong

    2012-10-01

    This paper presents a new Read_out IC (ROIC) that uses two shared capacitances for integral and sampling. At similar power consumption and chip area, this ROIC architecture achieves a higher frame rate compared with the conventional architecture. A 384×288 uncooled microbolometer focal plane array (FPA) based on the proposed circuit was implemented on silicon using a 0.5 μm CMOS technology. Measurements show the proposed architecture enables the frame rate increase of 6.8% using the same master clock.

  7. Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.

    Science.gov (United States)

    Raj, Anil; Wang, Sidney H; Shim, Heejung; Harpak, Arbel; Li, Yang I; Engelmann, Brett; Stephens, Matthew; Gilad, Yoav; Pritchard, Jonathan K

    2016-01-01

    Accurate annotation of protein coding regions is essential for understanding how genetic information is translated into function. We describe riboHMM, a new method that uses ribosome footprint data to accurately infer translated sequences. Applying riboHMM to human lymphoblastoid cell lines, we identified 7273 novel coding sequences, including 2442 translated upstream open reading frames. We observed an enrichment of footprints at inferred initiation sites after drug-induced arrest of translation initiation, validating many of the novel coding sequences. The novel proteins exhibit significant selective constraint in the inferred reading frames, suggesting that many are functional. Moreover, ~40% of bicistronic transcripts showed negative correlation in the translation levels of their two coding sequences, suggesting a potential regulatory role for these novel regions. Despite known limitations of mass spectrometry to detect protein expressed at low level, we estimated a 14% validation rate. Our work significantly expands the set of known coding regions in humans. PMID:27232982

  8. Comprehensive translational control of tyrosine kinase expression by upstream open reading frames

    OpenAIRE

    Wethmar, K; J. Schulz; Muro, E.M.; Talyan, S.; Andrade-Navarro, M A; Leutz, A

    2016-01-01

    Post-transcriptional control has emerged as a major regulatory event in gene expression and often occurs at the level of translation initiation. Although overexpression or constitutive activation of tyrosine kinases (TKs) through gene amplification, translocation or mutation are well-characterized oncogenic events, current knowledge about translational mechanisms of TK activation is scarce. Here, we report the presence of translational cis-regulatory upstream open reading frames (uORFs) in th...

  9. Varicella-Zoster Virus Open Reading Frame 48 Encodes an Active Nuclease

    OpenAIRE

    Mueller, Niklaus H.; Gilden, Don; Cohrs, Randall J.

    2013-01-01

    Based on a DNA sequence and relative genomic position similar to those other herpesviruses, varicella-zoster virus (VZV) open reading frame 48 (ORF48) is predicted to encode an alkaline nuclease. Here we report the cloning, expression, purification, and characterization of recombinant VZV ORF48 protein and a VZV ORF48 point mutation (T172P). Protein encoded by wild-type ORF48, but not mutant protein, displayed both endo- and exonuclease activity, identifying ORF48 as a potential therapeutic t...

  10. RNA elements in open reading frames of the bluetongue virus genome are essential for virus replication.

    Directory of Open Access Journals (Sweden)

    Femke Feenstra

    Full Text Available Members of the Reoviridae family are non-enveloped multi-layered viruses with a double stranded RNA genome consisting of 9 to 12 genome segments. Bluetongue virus is the prototype orbivirus (family Reoviridae, genus Orbivirus, causing disease in ruminants, and is spread by Culicoides biting midges. Obviously, several steps in the Reoviridae family replication cycle require virus specific as well as segment specific recognition by viral proteins, but detailed processes in these interactions are still barely understood. Recently, we have shown that expression of NS3 and NS3a proteins encoded by genome segment 10 of bluetongue virus is not essential for virus replication. This gave us the unique opportunity to investigate the role of RNA sequences in the segment 10 open reading frame in virus replication, independent of its protein products. Reverse genetics was used to generate virus mutants with deletions in the open reading frame of segment 10. Although virus with a deletion between both start codons was not viable, deletions throughout the rest of the open reading frame led to the rescue of replicating virus. However, all bluetongue virus deletion mutants without functional protein expression of segment 10 contained inserts of RNA sequences originating from several viral genome segments. Subsequent studies showed that these RNA inserts act as RNA elements, needed for rescue and replication of virus. Functionality of the inserts is orientation-dependent but is independent from the position in segment 10. This study clearly shows that RNA in the open reading frame of Reoviridae members does not only encode proteins, but is also essential for virus replication.

  11. Visualising ribosome profiling and using it for reading frame detection and exploration of eukaryotic translation initiation

    OpenAIRE

    Mannion Michel, Audrey

    2013-01-01

    Ribosome profiling (ribo-seq) is a recently developed technique that provides genomewide information on protein synthesis (GWIPS) in vivo. The high resolution of ribo-seq is one of the exciting properties of this technique. In Chapter 2, I present a computational method that utilises the sub-codon precision and triplet periodicity of ribosome profiling data to detect transitions in the translated reading frame. Application of this method to ribosome profiling data generated for human HeLa cel...

  12. OrfM: a fast open reading frame predictor for metagenomic data

    Science.gov (United States)

    Woodcroft, Ben J.; Boyd, Joel A.

    2016-01-01

    Summary: Finding and translating stretches of DNA lacking stop codons is a task common in the analysis of sequence data. However, the computational tools for finding open reading frames are sufficiently slow that they are becoming a bottleneck as the volume of sequence data grows. This computational bottleneck is especially problematic in metagenomics when searching unassembled reads, or screening assembled contigs for genes of interest. Here, we present OrfM, a tool to rapidly identify open reading frames (ORFs) in sequence data by applying the Aho–Corasick algorithm to find regions uninterrupted by stop codons. Benchmarking revealed that OrfM finds identical ORFs to similar tools (‘GetOrf’ and ‘Translate’) but is four-five times faster. While OrfM is sequencing platform-agnostic, it is best suited to large, high quality datasets such as those produced by Illumina sequencers. Availability and Implementation: Source code and binaries are freely available for download at http://github.com/wwood/OrfM or through GNU Guix under the LGPL 3+ license. OrfM is implemented in C and supported on GNU/Linux and OSX. Contacts: b.woodcroft@uq.edu.au Supplementary information: Supplementary data are available at Bioinformatics online. PMID:27153669

  13. tRNA properties help shape codon pair preferences in open reading frames

    OpenAIRE

    Buchan, J. Ross; Aucott, Lorna S; Stansfield, Ian

    2006-01-01

    Translation elongation is an accurate and rapid process, dependent upon efficient juxtaposition of tRNAs in the ribosomal A- and P-sites. Here, we sought evidence of A- and P-site tRNA interaction by examining bias in codon pair choice within open reading frames from a range of genomes. Three distinct and marked effects were revealed once codon and dipeptide biases had been subtracted. First, in the majority of genomes, codon pair preference is primarily determined by a tetranucleotide combin...

  14. An upstream open reading frame is essential for feedback regulation of ascorbate biosynthesis in Arabidopsis.

    Science.gov (United States)

    Laing, William A; Martínez-Sánchez, Marcela; Wright, Michele A; Bulley, Sean M; Brewster, Di; Dare, Andrew P; Rassam, Maysoon; Wang, Daisy; Storey, Roy; Macknight, Richard C; Hellens, Roger P

    2015-03-01

    Ascorbate (vitamin C) is an essential antioxidant and enzyme cofactor in both plants and animals. Ascorbate concentration is tightly regulated in plants, partly to respond to stress. Here, we demonstrate that ascorbate concentrations are determined via the posttranscriptional repression of GDP-l-galactose phosphorylase (GGP), a major control enzyme in the ascorbate biosynthesis pathway. This regulation requires a cis-acting upstream open reading frame (uORF) that represses the translation of the downstream GGP open reading frame under high ascorbate concentration. Disruption of this uORF stops the ascorbate feedback regulation of translation and results in increased ascorbate concentrations in leaves. The uORF is predicted to initiate at a noncanonical codon (ACG rather than AUG) and encode a 60- to 65-residue peptide. Analysis of ribosome protection data from Arabidopsis thaliana showed colocation of high levels of ribosomes with both the uORF and the main coding sequence of GGP. Together, our data indicate that the noncanonical uORF is translated and encodes a peptide that functions in the ascorbate inhibition of translation. This posttranslational regulation of ascorbate is likely an ancient mechanism of control as the uORF is conserved in GGP genes from mosses to angiosperms. PMID:25724639

  15. Insights into the translational regulation of biologically active open reading frames of Pelargonium line pattern virus.

    Science.gov (United States)

    Castaño, Aurora; Ruiz, Leticia; Hernández, Carmen

    2009-04-10

    Pelargonium line pattern virus (PLPV), a proposed member of a prospective genus (Pelarspovirus) within family Tombusviridae, has a positive-sense, single-stranded genomic RNA. According to previous predictions, it contains six open reading frames (ORFs) potentially encoding proteins of 27 (p27), 13 (p13), 87 (p87), 7 (p7), 6 (p6), and 37 kDa (p37). Using a variety of techniques we demonstrate that all predicted ORFs are functional, with the exception of (p13) and (p6). We also characterize a previously unidentified ORF which encodes a 9.7 kDa protein (p9.7) that is essential for viral movement. Furthermore, we present evidence that the single subgenomic RNA (sgRNA) produced by the virus directs synthesis of p7, p9.7 and p37. Remarkably, the translation of these totally unrelated proteins is coordinated via leaky-scanning. This mechanism seems to be favoured by the poor translation context of the start codon of ORF(p7), the non-AUG weak initiation codon of ORF(p9.7) and the lack of additional AUG codons in any reading frame preceding ORF(p37). The results also suggest that precise regulation of protein production from the sgRNA is critical for virus viability. Altogether, the data supports the notion that PLPV belongs to a new genus of plant viruses.

  16. Escherichia coli gpt gene provides dominant selection for vaccinia virus open reading frame expression vectors.

    Science.gov (United States)

    Falkner, F G; Moss, B

    1988-06-01

    Mycophenolic acid, an inhibitor of purine metabolism, was shown to block the replication of vaccinia virus in normal cell lines. This observation led to the development of a dominant one-step plaque selection system, based on expression of the Escherichia coli gpt gene, for the isolation of recombinant vaccinia viruses. Synthesis of xanthine-guanine phosphoribosyltransferase enabled only the recombinant viruses to form large plaques in a selective medium containing mycophenolic acid, xanthine, and hypoxanthine. To utilize the selection system efficiently, we constructed a series of plasmids that contain the E. coli gpt gene and allow insertion of foreign genes into multiple unique restriction endonuclease sites in all three reading frames between the translation initiation codon of a strong late promoter and synthetic translation termination sequences. The selection-expression cassette is flanked by vaccinia virus DNA that directs homologous recombination into the virus genome. The new vectors allow high-level expression of complete or partial open reading frames and rapid construction of recombinant viruses by facilitating the cloning steps and by simplifying their isolation. The system was tested by cloning the E. coli beta-galactosidase gene; in 24 h, this enzyme accounted for approximately 3.5% of the total infected-cell protein.

  17. MCP detector read out with a bare quad Timepix at kilohertz frame rates

    Science.gov (United States)

    Vallerga, J.; Raffanti, R.; Tremsin, A.; McPhate, J.; Siegmund, O.

    2011-01-01

    The existing Berkeley neutron sensitive MCP/Timepix hybrid detector has been very successful at demonstrating energy resolved spatial imaging with a single Timepix ASIC read out at a ~ 30 Hz frame rate where each neutron's position and time (energy) is determined (X,Y,E). By increasing the detector format using a quad arrangement of Timepix readouts and increasing the frame rate to 1 kHz, we can increase our total event throughput by a factor of 120, thereby taking full advantage of the high fluxes of modern pulsed neutron sources (106 n cm-2 s-1). The key to this conversion is a new design for the ASIC readout, called the Berkeley Quad Timepix detector, consisting of 3 major subsystems. The first is a quad (2 × 2) bare Timepix ASIC board mounted directly behind the neutron sensitive MCPs in a hermetic vacuum enclosure with a sapphire window. The data from the Timepix ASICs flow to the second subsystem called the Interface board whose field programmable gate array (FPGA) rearranges and converts the digital bit stream to LVDS logic levels before sending downstream to the third subsystem, the Roach board. The Roach board is also FPGA based, and takes the data from all the ASICs and analyses the frames to extract information on the input events to pass on to the host PC. This paper describes in detail the hardware and firmware designs to accomplish this task.

  18. Tying Down Loose Ends in the Chlamydomonas Genome: Functional Significance of Abundant Upstream Open Reading Frames

    Directory of Open Access Journals (Sweden)

    Frederick R. Cross

    2016-02-01

    Full Text Available The Chlamydomonas genome has been sequenced, assembled, and annotated to produce a rich resource for genetics and molecular biology in this well-studied model organism. The annotated genome is very rich in open reading frames upstream of the annotated coding sequence (‘uORFs’: almost three quarters of the assigned transcripts have at least one uORF, and frequently more than one. This is problematic with respect to the standard ‘scanning’ model for eukaryotic translation initiation. These uORFs can be grouped into three classes: class 1, initiating in-frame with the coding sequence (CDS (thus providing a potential in-frame N-terminal extension; class 2, initiating in the 5′ untranslated sequences (5UT and terminating out-of-frame in the CDS; and class 3, initiating and terminating within the 5UT. Multiple bioinformatics criteria (including analysis of Kozak consensus sequence agreement and BLASTP comparisons to the closely related Volvox genome, and statistical comparison to cds and to random sequence controls indicate that of ∼4000 class 1 uORFs, approximately half are likely in vivo translation initiation sites. The proposed resulting N-terminal extensions in many cases will sharply alter the predicted biochemical properties of the encoded proteins. These results suggest significant modifications in ∼2000 of the ∼20,000 transcript models with respect to translation initiation and encoded peptides. In contrast, class 2 uORFs may be subject to purifying selection, and the existent ones (surviving selection are likely inefficiently translated. Class 3 uORFs are found in more than half of transcripts, frequently multiple times per transcript; however, they are remarkably similar to random sequence expectations with respect to size, number, and composition, and therefore may in most cases be selectively neutral.

  19. SEQUENCE CONSERVATION OF HUMAN CYTOMEGALOVIRUS UL140 OPEN READING FRAME IN CLINICAL STRAINS

    Institute of Scientific and Technical Information of China (English)

    Ying Qi; Yan-ping Ma; Rong He; Zheng-rong Sun; Yaohua Ji; Yu-jing Huang; Qiang Ruan

    2008-01-01

    Objective To investigate the variability of human cytomegalovirus (HCMV) UL140 open reading frame (ORF)in clinical strains, and to explore the relationship between the variability of UL140 ORF and different symptoms of HC-MV infection.Methods HCMV ULI40 ORF was amplified by polymerase chain reaction and sequenced selectedly in 30 clinical strains.Results UL140 ORF of all clinical strains was amplified successfully. Compared with that of Toledo strain, the nncleotide and amino acid sequence identifies among all strains were 96.5% -100.0% and 95.2% -100.0%, respective-ly. All of the nucleotide changes were substitutions. The post-translational modification sites were conserved. The result of phylogenetic tree showed that the strains did not cluster according to different clinical symptoms.Conclusion HCMV UL140 ORF in clinical strains is highly conserved, which may play an important role in HC-MV infection.

  20. Minimum probe length for unique identification of all open reading frames in a microbial genome

    Energy Technology Data Exchange (ETDEWEB)

    Sokhansanj, B A; Ng, J; Fitch, J P

    2000-03-05

    In this paper, we determine the minimum hybridization probe length to uniquely identify at least 95% of the open reading frame (ORF) in an organism. We analyze the whole genome sequences of 17 species, 11 bacteria, 4 archaea, and 2 eukaryotes. We also present a mathematical model for minimum probe length based on assuming that all ORFs are random, of constant length, and contain an equal distribution of bases. The model accurately predicts the minimum probe length for all species, but it incorrectly predicts that all ORFs may be uniquely identified. However, a probe length of just 9 bases is adequate to identify over 95% of the ORFs for all 15 prokaryotic species we studied. Using a minimum probe length, while accepting that some ORFs may not be identified and that data will be lost due to hybridization error, may result in significant savings in microarray and oligonucleotide probe design.

  1. Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides.

    Science.gov (United States)

    Ma, Jiao; Diedrich, Jolene K; Jungreis, Irwin; Donaldson, Cynthia; Vaughan, Joan; Kellis, Manolis; Yates, John R; Saghatelian, Alan

    2016-04-01

    Computational, genomic, and proteomic approaches have been used to discover nonannotated protein-coding small open reading frames (smORFs). Some novel smORFs have crucial biological roles in cells and organisms, which motivates the search for additional smORFs. Proteomic smORF discovery methods are advantageous because they detect smORF-encoded polypeptides (SEPs) to validate smORF translation and SEP stability. Because SEPs are shorter and less abundant than average proteins, SEP detection using proteomics faces unique challenges. Here, we optimize several steps in the SEP discovery workflow to improve SEP isolation and identification. These changes have led to the detection of several new human SEPs (novel human genes), improved confidence in the SEP assignments, and enabled quantification of SEPs under different cellular conditions. These improvements will allow faster detection and characterization of new SEPs and smORFs. PMID:27010111

  2. An Alternative to Mapping a Word onto a Concept in Language Acquisition: Pragmatic Frames.

    Science.gov (United States)

    Rohlfing, Katharina J; Wrede, Britta; Vollmer, Anna-Lisa; Oudeyer, Pierre-Yves

    2016-01-01

    The classic mapping metaphor posits that children learn a word by mapping it onto a concept of an object or event. However, we believe that a mapping metaphor cannot account for word learning, because even though children focus attention on objects, they do not necessarily remember the connection between the word and the referent unless it is framed pragmatically, that is, within a task. Our theoretical paper proposes an alternative mechanism for word learning. Our main premise is that word learning occurs as children accomplish a goal in cooperation with a partner. We follow Bruner's (1983) idea and further specify pragmatic frames as the learning units that drive language acquisition and cognitive development. These units consist of a sequence of actions and verbal behaviors that are co-constructed with a partner to achieve a joint goal. We elaborate on this alternative, offer some initial parametrizations of the concept, and embed it in current language learning approaches.

  3. How strategic dynamics complicate the framing of alternatives in strategic environmental assessment

    DEFF Research Database (Denmark)

    Lyhne, Ivar

    2012-01-01

    of the Danish Natural Gas Security of Supply Plan. Special emphasis is given to the framing of alternatives in the SEA process, since alternatives are directly related to the contextual developments. Based on a participative approach, strategic dynamics are mapped and the reactions and concerns in the SEA team......Unpredictable and complex developments challenge the application of strategic environmental assessment (SEA), e.g. in terms of timing, prediction, and relevance of assessments. Especially multi-actor and unstructured strategic level decision-making processes often seem to be characterised...... are outlined. The contribution of the article is enhanced empirical understanding of strategic dynamics and how it challenges SEA application....

  4. Framing effects reveal discrete lexical-semantic and sublexical procedures in reading: an fMRI study.

    Science.gov (United States)

    Danelli, Laura; Marelli, Marco; Berlingeri, Manuela; Tettamanti, Marco; Sberna, Maurizio; Paulesu, Eraldo; Luzzatti, Claudio

    2015-01-01

    According to the dual-route model, a printed string of letters can be processed by either a grapheme-to-phoneme conversion (GPC) route or a lexical-semantic route. Although meta-analyses of the imaging literature support the existence of distinct but interacting reading procedures, individual neuroimaging studies that explored neural correlates of reading yielded inconclusive results. We used a list-manipulation paradigm to provide a fresh empirical look at this issue and to isolate specific areas that underlie the two reading procedures. In a lexical condition, we embedded disyllabic Italian words (target stimuli) in lists of either loanwords or trisyllabic Italian words with unpredictable stress position. In a GPC condition, similar target stimuli were included within lists of pseudowords. The procedure was designed to induce participants to emphasize either the lexical-semantic or the GPC reading procedure, while controlling for possible linguistic confounds and keeping the reading task requirements stable across the two conditions. Thirty-three adults participated in the behavioral study, and 20 further adult participants were included in the fMRI study. At the behavioral level, we found sizeable effects of the framing manipulations that included slower voice onset times for stimuli in the pseudoword frames. At the functional anatomical level, the occipital and temporal regions, and the intraparietal sulcus were specifically activated when subjects were reading target words in a lexical frame. The inferior parietal and anterior fusiform cortex were specifically activated in the GPC condition. These patterns of activation represented a valid classifying model of fMRI images associated with target reading in both frames in the multi-voxel pattern analyses. Further activations were shared by the two procedures in the occipital and inferior parietal areas, in the premotor cortex, in the frontal regions and the left supplementary motor area. These regions are most

  5. Framing effects reveal discrete lexical-semantic and sublexical procedures in reading: an fMRI study

    Directory of Open Access Journals (Sweden)

    Laura eDanelli

    2015-09-01

    Full Text Available According to the dual-route model, a printed string of letters can be processed by either a grapheme-to-phoneme conversion (GPC route or a lexical-semantic route. Although meta-analyses of the imaging literature support the existence of distinct but interacting reading procedures, individual neuroimaging studies that explored neural correlates of reading yielded inconclusive results. We used a list-manipulation paradigm to provide a fresh empirical look at this issue and to isolate specific areas that underlie the two reading procedures. In a lexical condition, we embedded disyllabic Italian words (target stimuli in lists of either loanwords or trisyllabic Italian words with an unpredictable stress position. In a GPC condition, similar target stimuli were mixed into lists of pseudowords. The procedure was designed to induce participants to emphasize a lexical-semantic or a GPC reading procedure, while controlling for possible linguistic confounds and keeping the reading task requirements stable across the two conditions. Thirty-three adults participated in the behavioral study, and 20 other adult participants were included in the fMRI study. At the behavioral level, we found sizeable effects of the framing manipulations that included slower voice onset times for stimuli in the pseudoword frames. At the functional anatomical level, the occipital and temporal regions, and the intraparietal sulcus were specifically activated when subjects were reading target words in a lexical frame. The inferior parietal and anterior fusiform cortex was specifically activated in the GPC condition. These patterns of activation represented a valid classifying model of fMRI images associated with target reading in both frames in the multi-voxel pattern analyses. Further activations were shared by the two procedures in the occipital and inferior parietal areas, in the premotor cortex, in the frontal regions and the left supplementary motor area. These regions are most

  6. HIGH VARIABILITY OF HUMAN CYTOMEGALOVIRUS UL150 OPEN READING FRAME IN LOW-PASSAGED CLINICAL ISOLATES

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Objective To investigate the polymorphism of human cytomegalovirus (HCMV) UL150 open reading frame(ORF) in low-passaged clinical isolates, and to study the relationship between the polymorphism and different pathogenesis of congenital HCMV infection.Methods PCR was performed to amplify the entire HCMV UL150 ORF region of 29 clinical isolates, which hadbeen proven containing detectable HCMV-DNA using fluorescence quantitative PCR. PCR amplifcation products weresequenced directly, and the data were analyzed.Results Totally 25 among 29 isolates were amplified, and 18 isolates were sequenced successfully. HCMVUL150 ORF sequences derived from congenitally infected infants were high variability. The UL150 ORF in all 18 clinical isolates shifted backward by 8 nucleotides leading to frame-shift, and contained a single nucleotide deletion at nucleotide position 226 compared with that of Toledo strain. The nucleotide diversity was 0. 1% to 6. 8% and the amino acid diversity was 0. 2% to 19. 2% related to Toledo strain. However, the nucleotide diversity was 0. 1% to 6.4% and amino acid diversity was 0. 2% to 8.3% by compared with Merlin strain. Compared with Toledo, 4 new cysteine residues and 13 additional posttranslational modification sites were observed in UL150 putative proteins of clinical isolates. Moreover, the UL150 putative protein contained an additional transmembrane helix at position of 4-17 amino acid related to Toledo.Conclusion HCMV UL150 ORF and deduced amino acid sequences of clinical strains are hypervariability. No obvious linkage between the polymorphism and different pathogenesis of congenital HCMV infection is found.

  7. Open reading frame 2 of porcine circovirus type 2 encodes a major capsid protein.

    Science.gov (United States)

    Nawagitgul, P; Morozov, I; Bolin, S R; Harms, P A; Sorden, S D; Paul, P S

    2000-09-01

    Porcine circovirus 2 (PCV2), a single-stranded DNA virus associated with post-weaning multisystemic wasting syndrome of swine, has two potential open reading frames, ORF1 and ORF2, greater than 600 nucleotides in length. ORF1 is predicted to encode a replication-associated protein (Rep) essential for replication of viral DNA, while ORF2 contains a conserved basic amino acid sequence at the N terminus resembling that of the major structural protein of chicken anaemia virus. Thus far, the structural protein(s) of PCV2 have not been identified. In this study, a viral structural protein of 30 kDa was identified in purified PCV2 particles. ORF2 of PCV2 was cloned into a baculovirus expression vector and the gene product was expressed in insect cells. The expressed ORF2 gene product had a molecular mass of 30 kDa, similar to that detected in purified virus particles. The recombinant ORF2 protein self-assembled to form capsid-like particles when viewed by electron microscopy. Antibodies against the ORF2 protein were detected in samples of sera obtained from pigs as early as 3 weeks after experimental infection with PCV2. These results show that the major structural protein of PCV2 is encoded by ORF2 and has a molecular mass of 30 kDa. PMID:10950986

  8. Translational control of protein kinase Ceta by two upstream open reading frames.

    Science.gov (United States)

    Raveh-Amit, Hadas; Maissel, Adva; Poller, Jonathan; Marom, Liraz; Elroy-Stein, Orna; Shapira, Michal; Livneh, Etta

    2009-11-01

    Protein kinase C (PKC) represents a family of serine/threonine kinases that play a central role in the regulation of cell growth, differentiation, and transformation. Posttranslational control of the PKC isoforms and their activation have been extensively studied; however, not much is known about their translational regulation. Here we report that the expression of one of the PKC isoforms, PKCeta, is regulated at the translational level both under normal growth conditions and during stress imposed by amino acid starvation, the latter causing a marked increase in its protein levels. The 5' untranslated region (5' UTR) of PKCeta is unusually long and GC rich, characteristic of many oncogenes and growth regulatory genes. We have identified two conserved upstream open reading frames (uORFs) in its 5' UTR and show their effect in suppressing the expression of PKCeta in MCF-7 growing cells. While the two uORFs function as repressive elements that maintain low basal levels of PKCeta in growing cells, they are required for its enhanced expression upon amino acid starvation. We show that the translational regulation during stress involves leaky scanning and is dependent on eIF-2alpha phosphorylation by GCN2. Our work further suggests that translational regulation could provide an additional level for controlling the expression of PKC family members, being more common than currently recognized. PMID:19797084

  9. SEQUENCE VARIABILITY OF HUMAN CYTOMEGALOVIRUS UL144 OPEN READING FRAME IN LOW-PASSAGE CLINICAL ISOLATES

    Institute of Scientific and Technical Information of China (English)

    Rong He; Yao-hua Ji; Qiang Ruan; Chang Xia; Lan-qing Liu; Sheng-min Lü; Ying Lu; Ying Qi; Yan-ping Ma; Qing Liu

    2004-01-01

    Objective To explore the relationship between human cytomegalovirus (HCMV) UL144 sequence variability and clinical disease.Methods HCMV UL144 open reading frame (ORF) was amplified by PCR assay in 72 lowpassage isolates [65 congenitally infective children and 7 healthy children who were HCMV-DNA positive by quantitative PCR (qPCR)]. All positive PCR products were analyzed by heteroduplex mobility assay and single-stranded conformation polymorphism (HMA-SSCP) and 32 of them were sequenced.Resuits Fifty-five patient isolates and five healthy children isolates were HCMV-UL144 positive by PCR. Sequencing and HMA-SSCP analysis showed that significant strain-specific variability was present in the UL144 ORF. Phylogenetic analysis indicated that the nucleotide sequences could be separated into 3 major genotypes. Comparing between UL144 sequences and the corresponding symptoms showed that genotype 2 did not exist in megacolon isolates. And genotype 1 and 3 were the major types among microcephaly and jaundice isolates respectively.Conclusions HCMV-UL144 existed in most of low passage isolates and sequences were hypervariable. The UL144ORF and its predicted product with the high level of sequence variability in different kinds of isolates suggest that UL144ORF might play a role in HCMV infectivity and subsequent diseases.

  10. Genetic characterization of complete open reading frame of glycoprotein C gene of bovine herpesvirus 1

    Directory of Open Access Journals (Sweden)

    Saurabh Majumder

    2013-10-01

    Full Text Available Aim: To characterize one of the major glycoprotein genes viz., glycoprotein C (gC; UL44, unique long region 44 of bovineherpesvirus 1(BoHV1 of Indian origin at genetic and phylogenetic level.Materials and Methods: A bovine herpesvirus 1 isolate viz., (BoHV1/IBR 216 II/ 1976/ India maintained at Division ofVirology, IVRI, Mukteswar was used for the current study. The DNA was extracted using commercial kit and the completeORF of gC gene was amplified, cloned, and sequenced by conventional Sanger sequencing method. The sequence wasgenetically and phylogenetically analysed using various bioinformatic tools. The sequence was submitted in the Genbankwith accession number Kc756965.Results: The complete ORF of gC gene was amplified and sequenced. It showed 100% sequence homology with referencecooper strain of BoHV1 and divergence varied from 0% to 2.7% with other isolates of BoHV1. The isolate under study haddivergence of 9.2%, 13%, 26.6%, and 9.2% with BoHV5 (Bovine herpesvirus 5, CvHV1 (Cervid herpesvirus 1, CpHV1(Caprine herpesvirus 1, and BuHV1 (Bubaline herpesvirus 1, respectively.Conclusion: This is the first genetic characterization of complete open reading frame (ORF of glycoprotein C gene (UL44 ofIndian isolate of BoHV1. The gC gene of BoHV1 is highly conserved among all BoHV1 isolates and it can be used as a targetfor designing diagnostic primers for the specific detection of BoHV1.

  11. Immunological and biochemical characterisation of 7ap, a short protein translated from an alternative frame of ORF7 of PRRSV.

    Science.gov (United States)

    Olasz, Ferenc; Dénes, Béla; Bálint, Ádám; Magyar, Tibor; Belák, Sándor; Zádori, Zoltán

    2016-06-01

    Sequence analysis revealed a short alternative open reading frame (ORF) named ORF7a within the nucleocapsid gene of genetically divergent porcine reproductive and respiratory syndrome virus (PRRSV) genomes. Alignment of the corresponding protein sequences (named 7ap) revealed substantial heterogeneity among 7aps of different genotypes, though all of them are predicted to be positively charged. Green fluorescent protein and FLAG fusion constructs of ORF7a of the HU-14432/2011 PRRSV demonstrated that 7ap is expressed. 7ap of HU- 14432/2011 (Hu7ap) was synthesised chemically, and ELISA experiments revealed that Hu7ap binds strongly to mammalian IgGs. Protein-protein gel retardation assays and complement fixation inhibition suggest that 7aps bind to the CH2 domain of the IgG(Fc) fragment. Cellular localisation and immunological characteristics of PRRSV 7ap may indicate multiple functions including nuclear and cytoplasmic over-tuning of normal cellular processes and immunosuppression. PMID:27342098

  12. Research on a Frame-Based Model of Reading Comprehension. Final Report.

    Science.gov (United States)

    Goldstein, Ira

    This report summarizes computational investigations of language comprehension based on Marvin Minsky's theory of frames, a recent advance in artifical intelligence theories about the representation of knowledge. The investigations discussed explored frame theory as a basis for text comprehension by implementing models of the theory and developing…

  13. Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology

    Directory of Open Access Journals (Sweden)

    Hammesfahr Björn

    2011-06-01

    Full Text Available Abstract Background Alternative splicing of pre-mature RNA is an important process eukaryotes utilize to increase their repertoire of different protein products. Several types of different alternative splice forms exist including exon skipping, differential splicing of exons at their 3'- or 5'-end, intron retention, and mutually exclusive splicing. The latter term is used for clusters of internal exons that are spliced in a mutually exclusive manner. Results We have implemented an extension to the WebScipio software to search for mutually exclusive exons. Here, the search is based on the precondition that mutually exclusive exons encode regions of the same structural part of the protein product. This precondition provides restrictions to the search for candidate exons concerning their length, splice site conservation and reading frame preservation, and overall homology. Mutually exclusive exons that are not homologous and not of about the same length will not be found. Using the new algorithm, mutually exclusive exons in several example genes, a dynein heavy chain, a muscle myosin heavy chain, and Dscam were correctly identified. In addition, the algorithm was applied to the whole Drosophila melanogaster X chromosome and the results were compared to the Flybase annotation and an ab initio prediction. Clusters of mutually exclusive exons might be subsequent to each other and might encode dozens of exons. Conclusions This is the first implementation of an automatic search for mutually exclusive exons in eukaryotes. Exons are predicted and reconstructed in the same run providing the complete gene structure for the protein query of interest. WebScipio offers high quality gene structure figures with the clusters of mutually exclusive exons colour-coded, and several analysis tools for further manual inspection. The genome scale analysis of all genes of the Drosophila melanogaster X chromosome showed that WebScipio is able to find all but two of the 28

  14. Facilitating Reading Acquisition in Multilingual Environments in India (FRAME-India). Final Report

    Science.gov (United States)

    Nakamura, Pooja; de Hoop, Thomas

    2014-01-01

    Most of the world is multilingual--multilingual at the national level (policies), at the community and family level (practices), and at the individual level (cognitive)--and each of these has implications for teaching and learning. Yet, at present, most reading decisions are not based on empirical research of how children learn to read in…

  15. Communicative Approach: An Alternative Method Used in Improving Students' Academic Reading Achievement

    Science.gov (United States)

    Irmawati, Noer Doddy

    2012-01-01

    Academic reading is a difficult subject to be mastered. It is needed because most of books or references are written in English. The emphasis is on academic reading which becomes a compulsory subject that must be taught and understood in Faculty of Letters UAD Yogyakarta. Communicative approach is used and applied as an alternative method in the…

  16. Kaposi's sarcoma-associated herpesvirus vCyclin open reading frame contains an internal ribosome entry site

    OpenAIRE

    Bieleski, L; Talbot, Simon

    2001-01-01

    We have previously examined the transcription and splicing of open reading frames (ORFS) 71 (K13), 72, and 73 of Kaposi's sarcoma-associated herpesvirus (KSHV) in the primary effusion lymphoma cell line BCP-1 (latently infected with KSHV) (45). The three genes encoded by these ORFs (for vFLIP, vCyclin, and latency-associated nuclear antigen [LANA]) are transcribed from a common transcription start site in BCP-1 cells during both latency and the lytic cycles. The resulting transcript is splice...

  17. Online Prelectures: An Alternative to Textbook Reading Assignments

    Science.gov (United States)

    Sadaghiani, Homeyra R.

    2012-05-01

    To engage students in a more meaningful discussion of course material and prompt their higher thinking skills, most instructors expect students to read the course textbook for initial exposure to the course content before class. However, as many instructors are aware, most students do not read their textbook throughout the quarter.1,2 At California State Polytechnic University, Pomona (Cal Poly Pomona) we have adopted web-based multimedia learning modules (MLMs) as prelecture assignments to help students to prepare for the class activities. The MLMs place lecture contents into the hands and control of the learners; similar to "flipped"3 or "inverted"4 classroom approaches, this method allows students to receive key course content outside of class and apply and analyze the content actively during class. In addition to initial exposure to basic principle, the MLMs provide additional worked examples that cannot be thoroughly covered in class.

  18. Identification and characterization of Kaposi's sarcoma-associated herpesvirus open reading frame 11 promotor activation

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Lei [Los Alamos National Laboratory

    2008-01-01

    Open reading frame 11 (ORF11) of Kaposi's sarcoma-associated herpesvirus belongs to a herpesviral homologous protein family shared by some members of the gamma- herpesvirus subfamily. Little is known about this ORF11 homologous protein family. We have characterized an unknown open reading frame, ORF11, located adjacent and in the opposite orientation to a well-characterized viral IL-6 gene. Northern blot analysis reveals that ORF11 is expressed during the KSHV lytic cycle with delayed-early transcription kinetics. We have determined the 5{prime} and 3{prime} untranslated region of the unspliced ORF11 transcript and identified both the transcription start site and the transcription termination site. Core promoter region, representing ORF11 promoter activity, was mapped to a 159nt fragment 5{prime} most proximal to the transcription start site. A functional TATA box was identified in the core promoter region. Interestingly, we found that ORF11 transcriptional activation is not responsive to Rta, the KSHV lytic switch protein. We also discovered that part of the ORF11 promoter region, the 209nt fragment upstream of the transcription start site, was repressed by phorbol esters. Our data help to understand transcription regulation of ORF11 and to elucidate roles of ORF11 in KSHV pathogenesis and life cycle.

  19. A simple explanation for a case of incompatibility with the reading frame theory in Duchenne muscular dystrophy: failure to detect an aberrant restriction fragment in Southern blot analysis.

    Science.gov (United States)

    Patria, S Y; Takeshima, Y; Suminaga, R; Nakamura, H; Iwasaki, R; Minagawa, T; Matsuo, M

    1999-09-01

    According to the translational reading frame theory, Duchenne muscular dystrophy (DMD) patients harbor out-of-frame deletion mutations in the dystrophin gene. We identified a Japanese DMD case who appeared to have an in-frame deletion of exons 46-54 that was disclosed by Southern blot analysis using a dystrophin cDNA as a probe. Analysis of dystrophin mRNA in skeletal muscle revealed the presence of an out-of-frame deletion of exons 46-53. In agreement with this result, the region encompassing exon 54 could be amplified from genomic DNA by polymerase chain reaction (PCR). Furthermore, re-analysis by Southern blot using an exon specific probe disclosed that a HindIII fragment containing exon 54 was present at aberrant size, leading to the incorrect conclusion that exon 54 had been deleted. Thus, this particular DMD case does not constitute an exception to the reading frame theory.

  20. Effects of Alternative Framing on the Publics Perceived Importance of Environmental Conservation

    Directory of Open Access Journals (Sweden)

    Amanda E Sorensen

    2015-05-01

    Full Text Available Effective communication of science to the general public is important for numerous reasons, including support for policy, funding, informed public decision making, among others. Prior research has found that scientists participating in public policy and public communication must frame their communication efforts in order to connect with audiences. A frame is the mechanism that individuals use to understand and interpret the world around them. Framing can encourage specific interpretations and reference points for a particular issue or event; especially when meaning is negotiated between the media and public audiences. In this study, we looked at the effect of framing within an environmental conservation context. To do this we had survey respondents rank common issues, among them being environmental conservation, from most important to least important for the government to address. We framed environmental conservation using three synonymous terms (environmental security, ecosystem services, and environmental quality to assess whether there was an effect on rankings dependent on how we framed environmental conservation. We also investigated the effect of individuals’ personality characteristics (identity frame on those environmental conservation rankings. We found that individuals who self-identified as environmentalist were positively associated with ranking highly (most important environmental conservation when it was framed as either environmental quality or ecosystem services, but not when it was framed as environmental security. Conversely, those individuals who did not rank themselves highly as self-identified environmentalists were positively associated with environmental conservation when it was framed as environmental security. This research suggests that framing audience specific messages can engender audience support in hot-button issues such as environmental conservation and climate change.

  1. Repeat associated non-ATG translation initiation: one DNA, two transcripts, seven reading frames, potentially nine toxic entities!

    Directory of Open Access Journals (Sweden)

    Christopher E Pearson

    2011-03-01

    Full Text Available Diseases associated with unstable repetitive elements in the DNA, RNA, and amino acids have consistently revealed scientific surprises. Most diseases are caused by expansions of trinucleotide repeats, which ultimately lead to diseases like Huntington's disease, myotonic dystrophy, fragile X syndrome, and a series of spinocerebellar ataxias. These repeat mutations are dynamic, changing through generations and within an individual, and the repeats can be bi-directionally transcribed. Unsuspected modes of pathogenesis involve aberrant loss of protein expression; aberrant over-expression of non-mutant proteins; toxic-gain-of-protein function through expanded polyglutamine tracts that are encoded by expanded CAG tracts; and RNA-toxic-gain-of-function caused by transcripts harboring expanded CUG, CAG, or CGG tracts. A recent advance reveals that RNA transcripts with expanded CAG repeats can be translated in the complete absence of a starting ATG, and this Repeat Associated Non-ATG translation (RAN-translation occurs across expanded CAG repeats in all reading frames (CAG, AGC, and GCA to produce homopolymeric proteins of long polyglutamine, polyserine, and polyalanine tracts. Expanded CTG tracts expressing CUG transcripts also show RAN-translation occurring in all three frames (CUG, UGC, and GCU, to produce polyleucine, polycysteine, and polyalanine. These RAN-translation products can be toxic. Thus, one unstable (CAG•(CTG DNA can produce two expanded repeat transcripts and homopolymeric proteins with reading frames (the AUG-directed polyGln and six RAN-translation proteins, yielding a total of potentially nine toxic entities. The occurrence of RAN-translation in patient tissues expands our horizons of modes of disease pathogenesis. Moreover, since RAN-translation counters the canonical requirements of translation initiation, many new questions are now posed that must be addressed. This review covers RAN-translation and some of the pertinent

  2. Frameless Stereotactic Radiosurgery, a Feasible Alternative to the Frame-Based Technique for the Treatment of Refractory Trigeminal Neuralgia.

    Science.gov (United States)

    Graff, Andrew E; Thomas, Andrew S; Reed, Aaron D; Skinner, William K

    2016-01-01

    Classic trigeminal neuralgia (TN) causes severe facial pain. Several treatment options exist for classic TN refractory to medical therapy, including stereotactic radiosurgery (SRS). Most studies in the medical literature used a frame-based SRS technique. Improvements in linear accelerator-based treatment systems and image guidance have led to the use of frameless SRS as a safe and feasible alternative to the frame-based technique for the treatment of refractory TN. We present a case of refractory TN successfully treated with frameless SRS. PMID:27186453

  3. Efficient Restoration of the Dystrophin Gene Reading Frame and Protein Structure in DMD Myoblasts Using the CinDel Method.

    Science.gov (United States)

    Iyombe-Engembe, Jean-Paul; Ouellet, Dominique L; Barbeau, Xavier; Rousseau, Joël; Chapdelaine, Pierre; Lagüe, Patrick; Tremblay, Jacques P

    2016-01-01

    The CRISPR/Cas9 system is a great revolution in biology. This technology allows the modification of genes in vitro and in vivo in a wide variety of living organisms. In most Duchenne muscular dystrophy (DMD) patients, expression of dystrophin (DYS) protein is disrupted because exon deletions result in a frame shift. We present here the CRISPR-induced deletion (CinDel), a new promising genome-editing technology to correct the DMD gene. This strategy is based on the use of two gRNAs targeting specifically exons that precede and follow the patient deletion in the DMD gene. This pair of gRNAs induced a precise large additional deletion leading to fusion of the targeted exons. Using an adequate pair of gRNAs, the deletion of parts of these exons and the intron separating them restored the DMD reading frame in 62% of the hybrid exons in vitro in DMD myoblasts and in vivo in electroporated hDMD/mdx mice. Moreover, adequate pairs of gRNAs also restored the normal spectrin-like repeat of the dystrophin rod domain; such restoration is not obtained by exon skipping or deletion of complete exons. The expression of an internally deleted DYS protein was detected following the formation of myotubes by the unselected, treated DMD myoblasts. Given that CinDel induces permanent reparation of the DMD gene, this treatment would not have to be repeated as it is the case for exon skipping induced by oligonucleotides. PMID:26812655

  4. Combination Antisense Treatment for Destructive Exon Skipping of Myostatin and Open Reading Frame Rescue of Dystrophin in Neonatal mdx Mice.

    Science.gov (United States)

    Lu-Nguyen, Ngoc B; Jarmin, Susan A; Saleh, Amer F; Popplewell, Linda; Gait, Michael J; Dickson, George

    2015-08-01

    The fatal X-linked Duchenne muscular dystrophy (DMD), characterized by progressive muscle wasting and muscle weakness, is caused by mutations within the DMD gene. The use of antisense oligonucleotides (AOs) modulating pre-mRNA splicing to restore the disrupted dystrophin reading frame, subsequently generating a shortened but functional protein has emerged as a potential strategy in DMD treatment. AO therapy has recently been applied to induce out-of-frame exon skipping of myostatin pre-mRNA, knocking-down expression of myostatin protein, and such an approach is suggested to enhance muscle hypertrophy/hyperplasia and to reduce muscle necrosis. Within this study, we investigated dual exon skipping of dystrophin and myostatin pre-mRNAs using phosphorodiamidate morpholino oligomers conjugated with an arginine-rich peptide (B-PMOs). Intraperitoneal administration of B-PMOs was performed in neonatal mdx males on the day of birth, and at weeks 3 and 6. At week 9, we observed in treated mice (as compared to age-matched, saline-injected controls) normalization of muscle mass, a recovery in dystrophin expression, and a decrease in muscle necrosis, particularly in the diaphragm. Our data provide a proof of concept for antisense therapy combining dystrophin restoration and myostatin inhibition for the treatment of DMD. PMID:25959011

  5. Alternative Perspectives of Reading/Writing Connections. Occasional Paper No. 130.

    Science.gov (United States)

    McCarthey, Sarah J.; Raphael, Taffy E.

    This paper describes three alternative perspectives--information processing, social constructivism, and Piagetian/naturalist--of reading/writing connections and suggests instructional implications influenced by the three perspectives. The paper explores each theory in terms of basic assumptions, related research, and strengths and limitations and…

  6. Rational genomics I: antisense open reading frames and codon bias in short-chain oxido reductase enzymes and the evolution of the genetic code.

    Science.gov (United States)

    Duax, William L; Huether, Robert; Pletnev, Vladimir Z; Langs, David; Addlagatta, Anthony; Connare, Sonjay; Habegger, Lukas; Gill, Jay

    2005-12-01

    The short-chain oxidoreductase (SCOR) family of enzymes includes over 6000 members, extending from bacteria and archaea to humans. Nucleic acid sequence analysis reveals that significant numbers of these genes are remarkably free of stopcodons in reading frames other than the coding frame, including those on the antisense strand. The genes from this subset also use almost entirely the GC-rich half of the 64 codons. Analysis of a million hypothetical genes having random nucleotide composition shows that the percentage of SCOR genes having multiple open reading frames exceeds random by a factor of as much as 1 x 10(6). Nevertheless, screening the content of the SWISS-PROT TrEMBL database reveals that 15% of all genes contain multiple open reading frames. The SCOR genes having multiple open reading frames and a GC-rich coding bias exhibit a similar GC bias in the nucleotide triple composition of their DNA. This bias is not correlated with the GC content of the species in which the SCOR genes are found. One possible explanation for the conservation of multiple open reading frames and extreme bias in nucleic acid composition in the family of Rossman folds is that the primordial member of this family was encoded early using only very stable GC-rich DNA and that evolution proceeded with extremely limited introduction of any codons having two or more adenine or thymine nucleotides. These and other data suggest that the SCOR family of enzymes may even have diverged from a common ancestor before most of the AT-rich half of the genetic code was fully defined.

  7. Human Cytomegalovirus UL138 Open Reading Frame Is Highly Conserved in Clinical Strains

    Institute of Scientific and Technical Information of China (English)

    Ying Qi; Rong He; Yan-ping Ma; Zheng-rong Sun; Yao-hua Ji; Qiang Ruan

    2009-01-01

    To investigate the variability of human cytomegalovirus (HCMV) UL138 open reading flame (ORF) in clinical strains.Methods HCMV UL138 ORF was amplified by polymerase chain reaction (PCR) and PCR amplification products were sequenced directly, and the data were analyzed in 19 clinical strains.Results UL138 ORF in all 30 clinical strains was amplified successfully. Compared with that of Toledo strain, the nucleotide and amino acid sequence identities of UL138 ORF in all strains were 97.41% to 99.41% and 98.24% to 99.42%, respectively. All of the nucleotide mutations were substitutions. The spatial structure and post-translational modification sites of UL138 encoded proteins were conserved. The result of phylogenetic tree showed that HCMV UL138 sequence variations were not definitely related with different clinical symptoms.Conclusion HCMV UL138 ORF in clinical strains is high conservation, which might be helpful for UL138 encoded protein to play a role in latent infection of HCMV.

  8. Who needs RDD? Combining directory listings with cell phone exchanges for an alternative telephone sampling frame

    OpenAIRE

    Guterbock, Thomas; Diop, Abdoulaye; Ellis, James; Trung Le, Kien

    2011-01-01

    Abstract The traditional Random Digit Dialing method (list-assisted RDD using a frame of landline phone numbers) is clearly under threat. The difficulty and costs of completing telephone surveys have increased due to rising rates of refusal and non-contact. The completeness of coverage of list-assisted RDD samples has diminished due to the proliferation of cell-phone only households. The ability of list-assisted RDD to capture young, mobile, unmarried, and minority households is thus dimin...

  9. ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files

    Directory of Open Access Journals (Sweden)

    Sievert Volker

    2002-12-01

    Full Text Available Abstract Background Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite of the cloning and recombinant expression of these proteins. Results A Java program was developed for retrieval of protein and nucleic acid sequences and annotations from NCBI GenBank, using the XML sequence format. Annotations retrieved by ORFer include sequence name, organism and also the completeness of the sequence. The program has a graphical user interface, although it can be used in a non-interactive mode. For protein sequences, the program also extracts the open reading frame sequence, if available, and checks its correct translation. ORFer accepts user input in the form of single or lists of GenBank GI identifiers or accession numbers. It can be used to extract complete sets of open reading frames and protein sequences from any kind of GenBank sequence entry, including complete genomes or chromosomes. Sequences are either stored with their features in a relational database or can be exported as text files in Fasta or tabulator delimited format. The ORFer program is freely available at http://www.proteinstrukturfabrik.de/orfer. Conclusion The ORFer program allows for fast retrieval of DNA sequences, protein sequences and their open reading frames and sequence annotations from GenBank. Furthermore, storage of sequences and features in a relational database is supported. Such a database can supplement a laboratory information system (LIMS with appropriate sequence information.

  10. Framing the frame

    Directory of Open Access Journals (Sweden)

    Todd McElroy

    2007-08-01

    Full Text Available We examined how the goal of a decision task influences the perceived positive, negative valence of the alternatives and thereby the likelihood and direction of framing effects. In Study 1 we manipulated the goal to increase, decrease or maintain the commodity in question and found that when the goal of the task was to increase the commodity, a framing effect consistent with those typically observed in the literature was found. When the goal was to decrease, a framing effect opposite to the typical findings was observed whereas when the goal was to maintain, no framing effect was found. When we examined the decisions of the entire population, we did not observe a framing effect. In Study 2, we provided participants with a similar decision task except in this situation the goal was ambiguous, allowing us to observe participants' self-imposed goals and how they influenced choice preferences. The findings from Study 2 demonstrated individual variability in imposed goal and provided a conceptual replication of Study 1. %need keywords

  11. Cytoplasmic male sterility-associated chimeric open reading frames identified by mitochondrial genome sequencing of four Cajanus genotypes.

    Science.gov (United States)

    Tuteja, Reetu; Saxena, Rachit K; Davila, Jaime; Shah, Trushar; Chen, Wenbin; Xiao, Yong-Li; Fan, Guangyi; Saxena, K B; Alverson, Andrew J; Spillane, Charles; Town, Christopher; Varshney, Rajeev K

    2013-10-01

    The hybrid pigeonpea (Cajanus cajan) breeding technology based on cytoplasmic male sterility (CMS) is currently unique among legumes and displays major potential for yield increase. CMS is defined as a condition in which a plant is unable to produce functional pollen grains. The novel chimeric open reading frames (ORFs) produced as a results of mitochondrial genome rearrangements are considered to be the main cause of CMS. To identify these CMS-related ORFs in pigeonpea, we sequenced the mitochondrial genomes of three C. cajan lines (the male-sterile line ICPA 2039, the maintainer line ICPB 2039, and the hybrid line ICPH 2433) and of the wild relative (Cajanus cajanifolius ICPW 29). A single, circular-mapping molecule of length 545.7 kb was assembled and annotated for the ICPA 2039 line. Sequence annotation predicted 51 genes, including 34 protein-coding and 17 RNA genes. Comparison of the mitochondrial genomes from different Cajanus genotypes identified 31 ORFs, which differ between lines within which CMS is present or absent. Among these chimeric ORFs, 13 were identified by comparison of the related male-sterile and maintainer lines. These ORFs display features that are known to trigger CMS in other plant species and to represent the most promising candidates for CMS-related mitochondrial rearrangements in pigeonpea. PMID:23792890

  12. A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing

    Science.gov (United States)

    Untiveros, Milton; Olspert, Allan; Artola, Katrin

    2016-01-01

    Summary The single‐stranded, positive‐sense RNA genome of viruses in the genus Potyvirus encodes a large polyprotein that is cleaved to yield 10 mature proteins. The first three cleavage products are P1, HCpro and P3. An additional short open reading frame (ORF), called pipo, overlaps the P3 region of the polyprotein ORF. Four related potyviruses infecting sweet potato (Ipomoea batatas) are predicted to contain a third ORF, called pispo, which overlaps the 3′ third of the P1 region. Recently, pipo has been shown to be expressed via polymerase slippage at a conserved GA6 sequence. Here, we show that pispo is also expressed via polymerase slippage at a GA6 sequence, with higher slippage efficiency (∼5%) than at the pipo site (∼1%). Transient expression of recombinant P1 or the ‘transframe’ product, P1N‐PISPO, in Nicotiana benthamiana suppressed local RNA silencing (RNAi), but only P1N‐PISPO inhibited short‐distance movement of the silencing signal. These results reveal that polymerase slippage in potyviruses is not limited to pipo expression, but can be co‐opted for the evolution and expression of further novel gene products. PMID:26757490

  13. Translocations used to generate chromosome segment duplications in Neurospora can disrupt genes and create novel open reading frames

    Indian Academy of Sciences (India)

    Parmit K Singh; Srividhya V Iyer; T Naga Sowjanya; B Kranthi Raj; Durgadas P Kasbekar

    2010-12-01

    In Neurospora crassa, crosses between normal sequence strains and strains bearing some translocations can yield progeny bearing a duplication (Dp) of the translocated chromosome segment. Here, 30 breakpoint junction sequences of 12 Dp-generating translocations were determined. The breakpoints disrupted 13 genes (including predicted genes), and created 10 novel open reading frames. Insertion of sequences from LG III into LG I as translocation T(UK818) disrupts the eat-3 gene, which is the ortholog of the Podospora anserine gene ami1. Since ami1-homozygous Podospora crosses were reported to increase the frequency of repeat-induced point mutation (RIP), we performed crosses homozygous for a deficiency in eat-3 to test for a corresponding increase in RIP frequency. However, our results suggested that, unlike in Podospora, the eat-3 gene might be essential for ascus development in Neurospora. Duplication–heterozygous crosses are generally barren in Neurospora; however, by using molecular probes developed in this study, we could identify Dp segregants from two different translocation–heterozygous crosses, and using these we found that the barren phenotype of at least some duplication–heterozygous crosses was incompletely penetrant.

  14. Cytoplasmic male sterility-associated chimeric open reading frames identified by mitochondrial genome sequencing of four Cajanus genotypes.

    Science.gov (United States)

    Tuteja, Reetu; Saxena, Rachit K; Davila, Jaime; Shah, Trushar; Chen, Wenbin; Xiao, Yong-Li; Fan, Guangyi; Saxena, K B; Alverson, Andrew J; Spillane, Charles; Town, Christopher; Varshney, Rajeev K

    2013-10-01

    The hybrid pigeonpea (Cajanus cajan) breeding technology based on cytoplasmic male sterility (CMS) is currently unique among legumes and displays major potential for yield increase. CMS is defined as a condition in which a plant is unable to produce functional pollen grains. The novel chimeric open reading frames (ORFs) produced as a results of mitochondrial genome rearrangements are considered to be the main cause of CMS. To identify these CMS-related ORFs in pigeonpea, we sequenced the mitochondrial genomes of three C. cajan lines (the male-sterile line ICPA 2039, the maintainer line ICPB 2039, and the hybrid line ICPH 2433) and of the wild relative (Cajanus cajanifolius ICPW 29). A single, circular-mapping molecule of length 545.7 kb was assembled and annotated for the ICPA 2039 line. Sequence annotation predicted 51 genes, including 34 protein-coding and 17 RNA genes. Comparison of the mitochondrial genomes from different Cajanus genotypes identified 31 ORFs, which differ between lines within which CMS is present or absent. Among these chimeric ORFs, 13 were identified by comparison of the related male-sterile and maintainer lines. These ORFs display features that are known to trigger CMS in other plant species and to represent the most promising candidates for CMS-related mitochondrial rearrangements in pigeonpea.

  15. Mapping of the nuclear localization signals in open reading frame 2 protein from porcine circovirus type 1

    Institute of Scientific and Technical Information of China (English)

    Jiangbing Shuai; Wei Wei; Lingli Jiang; Xiaoliang Li; Ning Chen; Weihuan Fang

    2008-01-01

    Porcine circovirus type 1 (PCV1) contains two major open reading frames encoding the replication-associated proteins and the major structural capsid (Cap) protein.PCV1 Cap has an N-terminus carrying several potential monopartite or bipartite nuclear localization signals (NLS).The contribution of these partially overlapping motifs to nuclear importing was identified by expression of mutated PCV1 Cap versions fused to enhanced green fluorescent protein (EGFP).The Cterminus truncated PCV1 Cap-EGFP was localized in nuclei of PK-15 cells similar to the wild-type PCV1 Cap-EGFP,whereas truncation of the N-terminus rendered the fusion protein distributed into cytoplasm,indicating that the nuclear import of PCV1 Cap was efficiently mediated by its N-terminal region.Substitutions of basic residues in stretches 9RRRR12 or the right part of 25RRPYLAHPAFRNRYRWRRK43 resulted in a diffused distribution of the fusion protein in both nuclei and cytoplasm,indicating that the two NLSs were responsible for restricted nuclear targeting of PCV1 Cap.

  16. Varicella-zoster virus (VZV) mediates a delayed host shutoff independent of open reading frame (ORF) 17 expression.

    Science.gov (United States)

    Waterboer, Tim; Rahaus, Markus; Wolff, Manfred H

    2002-01-01

    Varicella-zoster virus (VZV) open reading frame 17 (ORF 17) is the gene corresponding to Herpes simplex-virus (HSV) UL41. The UL41 gene encodes the virion host shutoff factor (vhs), a RNase that has been the object of detailed studies. In contrast to HSV, knowledge about VZV mediated shutoff effects and the role of ORF 17 is poor. We investigated the ORF 17 expression in infected cells and analyzed shutoff effects. ORF 17 expression could not be proven in infected human fibroblast cell lines and melanoma (MeWo) cells. Only after induction by Phorbol 12-myristate 13-acetate an ORF 17 expression became detectable in MeWo cells. Nevertheless, using stable expressed GAPDH mRNA as a marker for mRNA degradation, a VZV mediated shutoff, independent of ORF 17 expression, became measurable. Transfection experiments demonstrated that transient ORF 17 expression did not decrease the cellular GAPDH mRNA level. We examined whether the VZV shutoff factor is a tegument protein causing an early shutoff or whether it needs to be expressed (delayed shutoff). The GAPDH mRNA level in Actinomycin D pretreated and infected MeWo cells did not decrease even faster than the theoretical decay rate based on a half-life of 24 h. These findings lead to the conclusion that the VZV shutoff factor is not a mature protein localized in the virion and that VZV causes a delayed virion host shutoff effect.

  17. An alternative approach for teacher education framed by a collaborative partnership setting

    DEFF Research Database (Denmark)

    Pontoppidan, Birgitte Schou

    2010-01-01

    The study presents an alternative didactical approach to teacher education linking practice and theory through a collaborative partnership setting. Using a ―small scale teaching design in which students alternate between schools and college it was possible to show someevidence that, by following...... this approach, first year student teachers in a science & technology class developed teacher knowledge (as aspects of PCK). The study identifies an example using Co-Re and PaPeR as a Resource Folio to show where evidence of developing teacher knowledge is seen. This didactical approach turns the traditional...... teacher education on its head and begins with a focus on practice so students alternate between school–based and college–based teaching in a cyclical fashion, and are encouraged to link theory with practice. This kind of college teaching demands a new teacher educational paradigm for which collaboration...

  18. AN ALTERNATIVE APPROACH FOR TEACHER EDUCATION COURSES FRAMED BY A COLLABORATE PARTNERSHIP

    DEFF Research Database (Denmark)

    Pontoppidan, Birgitte

    2010-01-01

    The study presents an alternative didactical approach to teacher education linking practice and theory through a collaborative partnership setting. Using a “small scale” teaching design in which students alternate between schools and college it was possible to show some evidence that, by following...... this approach, first year student teachers in a science & technology class developed teacher knowledge (as aspects of PCK). The study identifies an example using Co-Re and PaPeR as a Resource Folio to show where evidence of developing teacher knowledge is seen. This didactical approach turns the traditional...... teacher education on its head and begins with a focus on practice so students alternate between school–based and college–based teaching in a cyclical fashion, and are encouraged to link theory with practice. This kind of college teaching demands a new teacher educational paradigm for which collaboration...

  19. Differences in lower limb transverse plane joint moments during gait when expressed in two alternative reference frames.

    Science.gov (United States)

    Schache, Anthony G; Baker, Richard; Vaughan, Christopher L

    2007-01-01

    When comparing previous studies that have measured the three-dimensional moments acting about the lower limb joints (either external moments or opposing internal joint moments) during able-bodied adult gait, significant variation is apparent in the profiles of the reported transverse plane moments. This variation cannot be explained on the basis of adopted convention (i.e. external versus internal joint moment) or inherent variability in gait strategies. The aim of the current study was to determine whether in fact the frame in which moments are expressed has a dominant effect upon transverse plane moments and thus provides a valid explanation for the observed inconsistency in the literature. Kinematic and ground reaction force data were acquired from nine able-bodied adult subjects walking at a self-selected speed. Three-dimensional hip, knee and ankle joint moments during gait were calculated using a standard inverse dynamics approach. In addition to calculating internal joint moments, the components of the external moment occurring in the transverse plane at each of the lower limb joints were calculated to determine their independent effects. All moments were expressed in both the laboratory frame (LF) as well as the anatomical frame (AF) of the distal segment. With the exception of the ankle rotation moment in the foot AF, lower limb transverse plane joint moments during gait were found to display characteristic profiles that were consistent across subjects. Furthermore, lower limb transverse plane joint moments during gait differed when expressed in the distal segment AF compared to the LF. At the hip, the two alternative reference frames produced near reciprocal joint moment profiles. The components of the external moment revealed that the external ground reaction force moment was primarily responsible for this result. Lower limb transverse plane joint moments during gait were therefore found to be highly sensitive to a change in reference frame. These

  20. Conserved-peptide upstream open reading frames (CPuORFs are associated with regulatory genes in angiosperms

    Directory of Open Access Journals (Sweden)

    Richard A Jorgensen

    2012-08-01

    Full Text Available Upstream open reading frames (uORFs are common in eukaryotic transcripts, but those that encode conserved peptides (CPuORFs occur in less than 1% of transcripts. The peptides encoded by three plant CPuORF families are known to control translation of the downstream ORF in response to a small signal molecule (sucrose, polyamines and phosphocholine. In flowering plants, transcription factors are statistically over-represented among genes that possess CPuORFs, and in general it appeared that many CPuORF genes also had other regulatory functions, though the significance of this suggestion was uncertain (Hayden and Jorgensen, 2007. Five years later the literature provides much more information on the functions of many CPuORF genes. Here we reassess the functions of 27 known CPuORF gene families and find that 22 of these families play a variety of different regulatory roles, from transcriptional control to protein turnover, and from small signal molecules to signal transduction kinases. Clearly then, there is indeed a strong association of CPuORFs with regulatory genes. In addition, 16 of these families play key roles in a variety of different biological processes. Most strikingly, the core sucrose response network includes three different CPuORFs, creating the potential for sophisticated balancing of the network in response to three different molecular inputs. We propose that the function of most CPuORFs is to modulate translation of a downstream major ORF (mORF in response to a signal molecule recognized by the conserved peptide and that because the mORFs of CPuORF genes generally encode regulatory proteins, many of them centrally important in the biology of plants, CPuORFs play key roles in balancing such regulatory networks.

  1. Identification of the polypeptides encoded in the unassigned reading frames 2, 4, 4L, and 5 of human mitochondrial DNA

    International Nuclear Information System (INIS)

    In previous work, antibodies prepared against chemically synthesized peptides predicted from the DNA sequence were used to identify the polypeptides encoded in three of the eight unassigned reading frames (URFs) of human mitochondrial DNA (mtDNA). In the present study, this approach has been extended to other human mtDNA URFs. In particular, antibodies directed against the NH2-terminal octapeptide of the putative URF2 product specifically precipitated component 11 of the HeLa cell mitochondrial translation products, the reaction being inhibited by the specific peptide. Similarly, antibodies directed against the COOH-terminal nonapeptide of the putative URF4 product reacted specifically with components 4 and 5, and antibodies against a COOH-terminal heptapeptide of the presumptive URF4L product reacted specifically with component 26. Antibodies against the NH2-terminal heptapeptide of the putative product of URF5 reacted with component 1, but only to a marginal extent; however, the results of a trypsin fingerprinting analysis of component 1 point strongly to this component as being the authentic product of URF5. The polypeptide assignments to the mtDNA URFs analyzed here are supported by the relative electrophoretic mobilities of proteins 11, 4-5, 26, and 1, which are those expected for the molecular weights predicted from the DNA sequence for the products of URF2, URF4, URF4L, and URF5, respectively. With the present assignment, seven of the eight human mtDNA URFs have been shown to be expressed in HeLa cells

  2. A short insert in the leader sequence of RNA 3L, a long variant of Alfalfa mosaic virus RNA3, introduces two unidentified reading frames.

    Science.gov (United States)

    Jayasena, Kithsiri W; Randles, John W

    2004-12-01

    N20-RNA 3L, a large form of RNA 3 associated with Alfalfa mosaic virus (AMV) strain N20 comprises 2281 nt and has approximately 97% overall sequence similarity to the longest previously described RNA 3 of AMV strain YSMV (YSMV-RNA 3; 2188 nt). Compared with YSMV-RNA 3, N20-RNA 3L contains an additional 97 nt in the 5' leader upstream of the open reading frames for movement protein (MP) and coat protein (CP). Two overlapping unidentified reading frames (URF1 and URF2) result from this modification, each of which code for putative translation products of 21 amino acids. The URF1 putative peptide has a hydrophilic N-terminus and a hydrophobic C-terminus, indicating a possible association with both host cell membrane and cytosol whereas the putative URF2 product is predominantly hydrophobic. A further structural modification found in N20-RNA 3L is a new tandem repeat of 243 nts which overlaps with the MP open reading frame. PMID:15550770

  3. The effects of direct instruction on the single-word reading skills of children who require augmentative and alternative communication.

    Science.gov (United States)

    Fallon, Karen A; Light, Janice; McNaughton, David; Drager, Kathryn; Hammer, Carol

    2004-12-01

    Current literature suggests a lack of empirically validated strategies for teaching reading skills to children who use augmentative and alternative communication (AAC). The current study implemented a single-subject, multiple-probe-across-subjects design to investigate the effects of direct instruction in single-word reading on the performance of students who use AAC. The instructional program targeted the reading skills of 5 participants who had severe speech impairments and ranged in age from 9 to 14 years old. All 5 participants reached criterion for matching targeted written words to corresponding pictures. Three of the 5 participants demonstrated generalization of reading skills to novel-word reading, and 4 of the 5 generalized reading skills to book contexts. Implications and directions for future research are discussed.

  4. Effects of a virtual platform in reading comprehension and vocabulary: An alternative to improve reading abilities in Elementary school

    OpenAIRE

    Cecilia Thorne; Kim Morla; Paola Ucelli; Teresa Nakano; Beatriz Mauchi; Lorena Landeo; Angie Vásquez; Román Huerta

    2013-01-01

    Given, on the one hand, the poor results obtained by Peruvian children in the national and international reading assessments. And on the other hand, the increased investment intechnology for schools in the country, this study aimed to develop and test an online tool to improve reading comprehension. In order to do this, the reading comprehension strategies and vocabulary activities from the research-based digital environment ICON were adapted to design the platform LEO. A total of 88 fifth gr...

  5. Production of Candida antaractica Lipase B Gene Open Reading Frame using Automated PCR Gene Assembly Protocol on Robotic Workcell & Expression in Ethanologenic Yeast for use as Resin-Bound Biocatalyst in Biodiesel Production

    Science.gov (United States)

    A synthetic Candida antarctica lipase B (CALB) gene open reading frame (ORF) for expression in yeast was produced using an automated PCR assembly and DNA purification protocol on an integrated robotic workcell. The lycotoxin-1 (Lyt-1) C3 variant gene ORF was added in-frame with the CALB ORF to pote...

  6. Determination of the sequence of the complete open reading frame and the 5 ' NTR of the Paderborn isolate of classical swine fever virus

    DEFF Research Database (Denmark)

    Oleksiewicz, Martin B.; Rasmussen, Thomas Bruun; Normann, Preben;

    2003-01-01

    , are virtually identical, confirming that the Paderborn isolate triggered the Dutch outbreak, and furthermore showing that this single isolate was stable throughout the whole Dutch outbreak (the above reviewed in [C. Terpstra, A. J. de Smit, Veterinary Microbiol. 77 (2000) 3-15]). We determined the nucleotide...... sequence of the 5' NTR (by 5' RACE) and the complete open reading frame of the Paderborn isolate (GenBank AY072924). Our sequence was identical to previously published partial 5'NTR and E2 sequences for the index Paderborn 1997 and Dutch 1997 (Venhorst) isolates, confirming the identity of the virus we...

  7. Effects of a virtual platform in reading comprehension and vocabulary: An alternative to improve reading abilities in Elementary school

    Directory of Open Access Journals (Sweden)

    Cecilia Thorne

    2013-06-01

    Full Text Available Given, on the one hand, the poor results obtained by Peruvian children in the national and international reading assessments. And on the other hand, the increased investment intechnology for schools in the country, this study aimed to develop and test an online tool to improve reading comprehension. In order to do this, the reading comprehension strategies and vocabulary activities from the research-based digital environment ICON were adapted to design the platform LEO. A total of 88 fifth graders from urban middle-to-low-income private schools from Lima participated in this quasi-experimental study, which involved acontrol group and a treatment group that participated in a 12-week teacher-mediated digital intervention. All participants were administered reading and vocabulary assessments pre and post intervention. Results revealed that students who participated in the intervention achieved higher comprehension scores for narrative texts and higher vocabulary scores than those of the control group.

  8. Reading comprehension as an alternative tool for teaching science and nuclear technology

    International Nuclear Information System (INIS)

    In recent decades, the vast amount of information originated in the production of knowledge and its applications, has highlighted the importance of being independent readers, critics, and able to interpret written material circulating referred to scientific and technological issues, that invade the people's daily life. Moreover, in the last stage of education system of all future citizens of the country, the results of many diagnoses have highlighted the difficulties of young students to understand the texts related to science and technology. However, simultaneously with these weaknesses, students permanently express the need to relate science and technology to everyday life, and are interested in the discussion of the news related to atomic energy spread by the mass media. This duality lack of interest in reading vs interest in knowledge in certain subjects, is what has been taken into account when proposing this pedagogical approach that simultaneously involves several aspects. From the need to find a trigger for the treatment of a particular issue, to familiarization of students with the vocabulary and methodology of science ill the debate on the characteristics of specific technological applications of nuclear technology. Considering particularly the last of these factors, since 2011 has been developed in Jose Maria Paz School of Cordoba, Reading Comprehension Experience, using texts with scientific and technological contents published by Institute for Energy and Development (IEDS) of the National Atomic Energy Commission (CNEA) in Knowledge Leaves Series, as a methodological tool, to bring students to the physics of the atom and matter. The reading strategy used is based on the hypothesis of the type of questions being asked about the contents, can help students to develop reading strategies for comprehension and thus contribute positively to his learning. With this proposal it has been observed an increased on student interest in learning natural science

  9. Reading.

    Science.gov (United States)

    Gee, James Paul

    1992-01-01

    Explores what is meant by reading, noting that to read is to respond appropriately to a specific consensus centered on certain values and that the consensus is achieved among persons whose paths through life have come together with members of dominant discourses in society. (SLD)

  10. The CPT1C 5'UTR contains a repressing upstream open reading frame that is regulated by cellular energy availability and AMPK.

    Directory of Open Access Journals (Sweden)

    Ines Lohse

    Full Text Available BACKGROUND: Translational control is utilized as a means of regulating gene expression in many species. In most cases, posttranscriptional regulatory mechanisms play an important role in stress response pathways and can lead to dysfunctional physiology if blocked by mutations. Carnitine Palmitoyltransferase 1 C (CPT1C, the brain-specific member of the CPT 1 family, has previously been shown to be involved in regulating metabolism in situations of energy surplus. PRINCIPAL FINDINGS: Sequence analysis of the CPT1C mRNA revealed that it contains an upstream open reading frame (uORF in the 5' UTR of its mRNA. Using CPT1C 5' UTR/luciferase constructs, we investigated the role of the uORF in translational regulation. The results presented here show that translation from the CPT1C main open reading frame (mORF is repressed by the presence of the uORF, that this repression is relieved in response to specific stress stimuli, namely glucose deprivation and palmitate-BSA treatment, and that AMPK inhibition can relieve this uORF-dependent repression. SIGNIFICANCE: The fact that the mORF regulation is relieved in response to a specific set of stress stimuli rather than general stress response, hints at an involvement of CPT1C in cellular energy-sensing pathways and provides further evidence for a role of CPT1C in hypothalamic regulation of energy homeostasis.

  11. Slip of grip of a molecular motor on a crowded track: Modeling shift of reading frame of ribosome on RNA template

    CERN Document Server

    Mishra, Bhavya; Chowdhury, Debashish

    2016-01-01

    We develop a stochastic model for the programmed frameshift of ribosomes synthesizing a protein while moving along a mRNA template. Normally the reading frame of a ribosome decodes successive triplets of nucleotides on the mRNA in a step-by-step manner. We focus on the programmed shift of the ribosomal reading frame, forward or backward, by only one nucleotide which results in a fusion protein; it occurs when a ribosome temporarily loses its grip to its mRNA track. Special "slippery" sequences of nucleotides and also downstream secondary structures of the mRNA strand are believed to play key roles in programmed frameshift. Here we explore the role of an hitherto neglected parameter in regulating -1 programmed frameshift. Specifically, we demonstrate that the frameshift frequency can be strongly regulated also by the density of the ribosomes, all of which are engaged in simultaneous translation of the same mRNA, at and around the slippery sequence. Monte Carlo simulations support the analytical predictions obt...

  12. Slip of grip of a molecular motor on a crowded track: Modeling shift of reading frame of ribosome on RNA template

    Science.gov (United States)

    Mishra, Bhavya; Schütz, Gunter M.; Chowdhury, Debashish

    2016-06-01

    We develop a stochastic model for the programmed frameshift of ribosomes synthesizing a protein while moving along a mRNA template. Normally the reading frame of a ribosome decodes successive triplets of nucleotides on the mRNA in a step-by-step manner. We focus on the programmed shift of the ribosomal reading frame, forward or backward, by only one nucleotide which results in a fusion protein; it occurs when a ribosome temporarily loses its grip to its mRNA track. Special “slippery” sequences of nucleotides and also downstream secondary structures of the mRNA strand are believed to play key roles in programmed frameshift. Here we explore the role of an hitherto neglected parameter in regulating -1 programmed frameshift. Specifically, we demonstrate that the frameshift frequency can be strongly regulated also by the density of the ribosomes, all of which are engaged in simultaneous translation of the same mRNA, at and around the slippery sequence. Monte Carlo simulations support the analytical predictions obtained from a mean-field analysis of the stochastic dynamics.

  13. Using Simulations to Investigate the Longitudinal Stability of Alternative Schemes for Classifying and Identifying Children with Reading Disabilities

    Science.gov (United States)

    Schatschneider, Christopher; Wagner, Richard K.; Hart, Sara A.; Tighe, Elizabeth L.

    2016-01-01

    The present study employed data simulation techniques to investigate the 1-year stability of alternative classification schemes for identifying children with reading disabilities. Classification schemes investigated include low performance, unexpected low performance, dual-discrepancy, and a rudimentary form of constellation model of reading…

  14. Alternative Text Types to Improve Reading Fluency for Competent to Struggling Readers

    Science.gov (United States)

    Rasinski, Timothy V.; Rupley, William H.; Pagie, David D.; Nichols, William Dee

    2016-01-01

    This article offers instructional suggestions and strategies based on research and theoretical literature for developing reading fluency through the use of rhyming poetry and other texts beyond the narrative and informational texts that have been traditionally used for reading instruction. Readers' lack of fluency in reading can be a monumental…

  15. The segment-to-frame association in word reading: Early effects of the interaction between segmental and suprasegmental information

    Directory of Open Access Journals (Sweden)

    Simone eSulpizio

    2015-10-01

    Full Text Available In four reading aloud experiments we investigated the operations occurring at the level of the phonological buffer by manipulating stress and phoneme information. In all experiments we adopted a masked priming paradigm with three-syllable Italian word targets. Experiments 1 and 2 tested the effect of pure segmental (e.g., fe%%%% – FEcola and pure suprasegmental (CInema – FEcola overlap, respectively. Experiments 3 and 4 tested the joint manipulation of segmental and suprasegmental information, by using prime-target pairs that shared the first syllable and did or did not share their stress pattern (e.g. FEgato – FEcola vs. feNIce – FEcola. The results showed that both segmental and suprasegmental primes affect reading at an abstract phonological level. Moreover, the joint manipulation of stress and phonemes showed an asymmetric pattern for different stress patterns, suggesting that the phonemic and the stress systems address the articulation planning through a process that starts as soon as the relevant information about the to-be-planned unit is active.

  16. Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta

    Directory of Open Access Journals (Sweden)

    Nyalwidhe Julius

    2008-05-01

    Full Text Available Abstract Background Cryptophytes are highly compartmentalized organisms, expressing a secondary minimized eukaryotic genome in the nucleomorph and its surrounding remnant cytoplasm, in addition to the cell nucleus, the mitochondrion and the plastid. Because the members of the nucleomorph-encoded proteome may contribute to essential cellular pathways, elucidating nucleomorph-encoded functions is of utmost interest. Unfortunately, cryptophytes are inaccessible for genetic transformations thus far. Therefore the functions of nucleomorph-encoded proteins must be elucidated indirectly by application of methods in genetically accessible organisms. Results Orf222, one of the uncharacterized nucleomorph-specific open reading frames of the cryptophyte Guillardia theta, shows homology to slr1649 of Synechocystis sp. PCC 6803. Recently a further homolog from Synechococcus sp. PCC 7002 was characterized to encode a phycocyanin-β155-bilin lyase. Here we show by insertion mutagenesis that the Synechocystis sp. PCC 6803 slr1649-encoded protein also acts as a bilin lyase, and additionally contributes to linker attachment and/or stability of phycobilisomes. Finally, our results indicate that the phycocyanin-β155-bilin lyase of Synechocystis sp. PCC 6803 can be complemented in vivo by the nucleomorph-encoded open reading frame orf222. Conclusion Our data show that the loss of phycocyanin-lyase function causes pleiotropic effects in Synechocystis sp. PCC 6803 and indicate that after separating from a common ancestor protein, the phycoerythrin lyase from Guillardia theta has retained its capacity to couple a bilin group to other phycobiliproteins. This is a further, unexpected example of the universality of phycobiliprotein lyases.

  17. The Reading Response E-Journal: An Alternative Way to Engage Low-Achieving EFL Students

    Science.gov (United States)

    Lee, Hsiao-Chien

    2013-01-01

    The reading response journal has been valued as an effective tool for involving students in authentic reading and writing activities. As the internet has become an essential medium in today's English classroom, it is advisable to integrate both the web and the journal when approaching our EFL students. In order to motivate and engage my…

  18. Popcorn Story Frames.

    Science.gov (United States)

    DiLella, Carol Ann

    This paper presents "popcorn story frames"--holistic outlines that facilitate comprehension when reading and writing stories, useful for outlining stories read and for creating outlines for original student stories--that are particularly useful for elementary and intermediate school students. "Popcorn" pops in a horizontal manner rather than in a…

  19. Adenovirus E4 open reading frame 4-induced dephosphorylation inhibits E1A activation of the E2 promoter and E2F-1-mediated transactivation independently of the retinoblastoma tumor suppressor protein

    DEFF Research Database (Denmark)

    Mannervik, M; Fan, S; Ström, A C;

    1999-01-01

    of the viral E4 open reading frame 4 (E4-ORF4) protein. This effect does not to require the retinoblastoma protein that previously has been shown to regulate E2F activity. The inhibitory activity of E4-ORF4 appears to be specific because E4-ORF4 had little effect on, for example, E4-ORF6/7 transactivation...

  20. 78 FR 27953 - Reorganization of Foreign-Trade Zone 147 Under Alternative Site Framework Reading, Pennsylvania

    Science.gov (United States)

    2013-05-13

    ... inviting public comment was given in the Federal Register (77 FR 66796-66797, 11/7/2012) and the... Reading, Pennsylvania Pursuant to its authority under the Foreign-Trade Zones Act of June 18, 1934,...

  1. Generation of Ips cells using defined factors linked via the self-cleaving 2A sequences in a single open reading frame

    Institute of Scientific and Technical Information of China (English)

    Lijian Shao; Wei Feng; Yan Sun; Hao Bai; Jun Liu; Caroline Currie; Jaejung Kim; Rafael Gama; Zack Wang; Zhijian Qian; Lucy Liaw; Wen-Shu Wu

    2009-01-01

    Generation of induced pluripotent stem (iPS) cells from somatic cells has been achieved successfully by simultane-ous viral transduction of defined reprogramming transcription factors (TFs). However, the process requires multiple viral vectors for gene delivery. As a result, generated iPS cells harbor numerous viral integration sites in their ge-nomes. This can increase the probability of gene mutagenesis and genomic instability, and present significant barriers to both research and clinical application studies of iPS cells. In this paper, we present a simple lentivirus reprogram-ming system in which defined factors are fused in-frame into a single open reading frame (ORF) via self-cleaving 2A sequences. A GFP marker is placed downstream of the transgene to enable tracking of transgene expression. We demonstrate that this polycistronic expression system efficiently generates iPS cells. The generated iPS cells have nor-mal karyotypes and are similar to mouse embryonic stem cells in morphology and gene expression. Moreover, they can differentiate into cell types of the three embryonic germ layers in both in vitro and in vivo assays. Remarkably, most of these iPS cells only harbor a single copy of viral vector. This system provides a valuable tool for generation of iPS cells, and our data suggest that the balance of expression of transduced reprogramming TFs in each cell is essen-tial for the reprogramming process. More importantly, when delivered by non-integrating gene-delivery systems, this re-engineered single ORF will facilitate efficient generation of human iPS cells free of genetic modifications.

  2. Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing.

    Science.gov (United States)

    Treutlein, Barbara; Gokce, Ozgun; Quake, Stephen R; Südhof, Thomas C

    2014-04-01

    Neurexins are evolutionarily conserved presynaptic cell-adhesion molecules that are essential for normal synapse formation and synaptic transmission. Indirect evidence has indicated that extensive alternative splicing of neurexin mRNAs may produce hundreds if not thousands of neurexin isoforms, but no direct evidence for such diversity has been available. Here we use unbiased long-read sequencing of full-length neurexin (Nrxn)1α, Nrxn1β, Nrxn2β, Nrxn3α, and Nrxn3β mRNAs to systematically assess how many sites of alternative splicing are used in neurexins with a significant frequency, and whether alternative splicing events at these sites are independent of each other. In sequencing more than 25,000 full-length mRNAs, we identified a novel, abundantly used alternatively spliced exon of Nrxn1α and Nrxn3α (referred to as alternatively spliced sequence 6) that encodes a 9-residue insertion in the flexible hinge region between the fifth LNS (laminin-α, neurexin, sex hormone-binding globulin) domain and the third EGF-like sequence. In addition, we observed several larger-scale events of alternative splicing that deleted multiple domains and were much less frequent than the canonical six sites of alternative splicing in neurexins. All of the six canonical events of alternative splicing appear to be independent of each other, suggesting that neurexins may exhibit an even larger isoform diversity than previously envisioned and comprise thousands of variants. Our data are consistent with the notion that α-neurexins represent extracellular protein-interaction scaffolds in which different LNS and EGF domains mediate distinct interactions that affect diverse functions and are independently regulated by independent events of alternative splicing.

  3. Expression, nucleotide sequence and mutational analysis of two open reading frames in the nif gene region of Anabaena sp. strain PCC7120.

    Science.gov (United States)

    Borthakur, D; Basche, M; Buikema, W J; Borthakur, P B; Haselkorn, R

    1990-04-01

    A 1.8 kb transcript corresponding to a region of the Anabaena 7120 chromosome 4 kb downstream of the nifHDK operon appears 12-18 h after heterocyst induction. The DNA corresponding to this transcript was sequenced and found to contain two open reading frames, designated ORF 1 and ORF 2. Two polypeptides, of 30 kDa and 13 kDa, encoded by these ORFs were expressed in Escherichia coli. An apparent start site for the transcript, detected by S1 nuclease protection, was located 42 bp upstream of the ATG start codon of ORF 1. ORF 2 shows strong sequence similarity to ORF 6 in the nif gene region of Azotobacter vinelandii. ORF 1 was interrupted using a 1.4 kb neomycin resistance cassette and the resulting mutant grew very slowly on medium lacking combined nitrogen. The mutant had 45% of wild-type acetylene reduction activity, which could be complemented by a 2.8 kb EcoRI fragment of wild-type Anabaena DNA containing only ORF 1 and ORF 2. Thus, one or both of these ORFs is required for efficient nitrogen fixation in Anabaena. PMID:2115111

  4. Open reading frames 1a and 1b of the porcine reproductive and respiratory syndrome virus (PRRSV) collaboratively initiate viral minus-strand RNA synthesis.

    Science.gov (United States)

    Tang, Yan-Dong; Fang, Qiong-Qiong; Liu, Ji-Ting; Wang, Tong-Yun; Wang, Yu; Tao, Ye; Liu, Yong-Gang; Cai, Xue-Hui

    2016-09-01

    The porcine reproductive and respiratory syndrome virus (PRRSV) causes a persistent threat to the swine industry, especially when highly pathogenic PRRSV (HP-PRRSV) emerges. Previous studies have indicated that PRRSV RNA synthesis was correlated with HP-PRRSV virulence. PRRSV RNA synthesis includes genomic RNA and sub-genomic mRNA, and these processes require minus-strand RNA as a template. However, the mechanisms involved in PRRSV minus-strand RNA synthesis are not fully understood. A mini-genome system can be used to assess viral replication mechanisms and to evaluate the effects of potential antiviral drugs on viral replicase activities. In this study, we developed a mini-genome system that uses firefly luciferase as a reporter. Based on this system, we found that PRRSV RNA-dependent RNA polymerase nsp9 alone failed to activate virus minus-strand RNA synthesis. We also demonstrated that combinations of open reading frames 1a (ORF1a) and ORF1b are necessary for viral minus-strand RNA synthesis. PMID:27378424

  5. Genetic polymorphism of UL144 open reading frame of human cytomegalovirus DNA detected in colon samples from infants with Hirschsprung's disease

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    AIM: To explore the genetic diversities of UL144 open reading frame (ORF) of cytomegalovirus DNA detected in colon tissue from infants with Hirschsprung's disease (HD)by sequencing UL144 DNA in 23 aganglionic colon tissue and 4 urine samples from 25 HD infants.METHODS: Nest PCR was performed for amplification of the UL144 gene. The UL144 gene was analyzed with softwares, such as DNAclub, BioEdit, PROSITE database,and DNAstar.RESULTS: The strains from HD patients were distributed among three genotypes of UL144: group 1A (64%),group 2 (24%), and group 3 (12%). The UL144 genotypes between strains from HD and control group were compared by chi square test (χ2 = 1.870, P = 0.393).Strains from the colon were sporadically distributed in UL144 genotypes.CONCLUSION: There are genetic diversities of UL144ORF in colon tissue of infants with HD. However,cytomegalovirus UL144 genotypes are not associated with clinical manifestations of HD.

  6. Peer Tutoring for Reading Fluency as a Feasible and Effective Alternative in Response to Intervention Systems

    Science.gov (United States)

    Dufrene, Brad A.; Reisener, Carmen D.; Olmi, D. Joe; Zoder-Martell, Kimberly; McNutt, Marlena R.; Horn, Dana R.

    2010-01-01

    Peer tutoring is an evidence-based procedure for improving academic performance for a variety of skill areas. The current study evaluated the feasibility and impact of a peer tutoring package for reading fluency with 4 middle school students receiving Tier II remedial supports. This study used a multiple baseline design across participants to…

  7. An investigation of alternative configurations of the read controllers of the Fermi LAT tracker

    CERN Document Server

    Rochester, Leon

    2012-01-01

    The Fermi Large Area Telescope (LAT) consists of 16 towers, each incorporating a tracker made up of a stack of 18 pairs of orthogonal silicon strip detectors (SSDs), interspersed with tungsten converter foils. The strip numbers of the struck strips in each SSD plane are collected by two read controllers (RCs), one at each end, and nine RCs are connected by one of eight cables to a cable controller (CC). The tracker readout electronics limit the number of strips that can be read out. Although each RC can store up to 64 hits, a CC can store maximum of only 128 hits. To insure that the photon shower development and backsplash in the lower layers of the tracker don't compromise the readout of the upper layers, we artificially limit the number of strips read out into each RC to 14, so that no CC can ever can see more than 126 hit strips. In this contribution, we explore other configurations that will allow for a more complete readout of large events, and investigate some of the consequences of using these configur...

  8. Sequence-specific binding of a hormonally regulated mRNA binding protein to cytidine-rich sequences in the lutropin receptor open reading frame.

    Science.gov (United States)

    Kash, J C; Menon, K M

    1999-12-21

    In previous studies, a lutropin receptor mRNA binding protein implicated in the hormonal regulation of lutropin receptor mRNA stability was identified. This protein, termed LRBP-1, was shown by RNA gel electrophoretic mobility shift assay to specifically interact with lutropin receptor RNA sequences. The present studies have examined the specificity of lutropin receptor mRNA recognition by LRBP-1 and mapped the contact site by RNA footprinting and by site-directed mutagenesis. LRBP-1 was partially purified by cation-exchange chromatography, and the mRNA binding properties of the partially purified LRBP-1 were examined by RNA gel electrophoretic mobility shift assay and hydroxyl-radical RNA footprinting. These data showed that the LRBP-1 binding site is located between nucleotides 203 and 220 of the receptor open reading frame, and consists of the bipartite polypyrimidine sequence 5'-UCUC-X(7)-UCUCCCU-3'. Competition RNA gel electrophoretic mobility shift assays demonstrated that homoribopolymers of poly(rC) were effective RNA binding competitors, while poly(rA), poly(rG), and poly(rU) showed no effect. Mutagenesis of the cytidine residues contained within the LRBP-1 binding site demonstrated that all the cytidines in the bipartite sequence contribute to LRBP-1 binding specificity. Additionally, RNA gel electrophoretic mobility supershift analysis showed that LRBP-1 was not recognized by antibodies against two well-characterized poly(rC) RNA binding proteins, alphaCP-1 and alphaCP-2, implicated in the regulation of RNA stability of alpha-globin and tyrosine hydroxylase mRNAs. In summary, we show that partially purified LRBP-1 binds to a polypyrimidine sequence within nucleotides 203 and 220 of lutropin receptor mRNA with a high degree of specificity which is indicative of its role in posttranscriptional control of lutropin receptor expression.

  9. Implementation and assessment of a yeast orphan gene research project: involving undergraduates in authentic research experiences and progressing our understanding of uncharacterized open reading frames.

    Science.gov (United States)

    Bowling, Bethany V; Schultheis, Patrick J; Strome, Erin D

    2016-02-01

    Saccharomyces cerevisiae was the first eukaryotic organism to be sequenced; however, little progress has been made in recent years in furthering our understanding of all open reading frames (ORFs). From October 2012 to May 2015 the number of verified ORFs had only risen from 75.31% to 78%, while the number of uncharacterized ORFs had decreased from 12.8% to 11% (representing > 700 genes still left in this category; http://www.yeastgenome.org/genomesnapshot). Course-based research has been shown to increase student learning while providing experience with real scientific investigation; however, implementation in large, multi-section courses presents many challenges. This study sought to test the feasibility and effectiveness of incorporating authentic research into a core genetics course, with multiple instructors, to increase student learning and progress our understanding of uncharacterized ORFs. We generated a module-based annotation toolkit and utilized easily accessible bioinformatics tools to predict gene function for uncharacterized ORFs within the Saccharomyces Genome Database (SGD). Students were each assigned an uncharacterized ORF, which they annotated using contemporary comparative genomics methodologies, including multiple sequence alignment, conserved domain identification, signal peptide prediction and cellular localization algorithms. Student learning outcomes were measured by quizzes, project reports and presentations, as well as a post-project questionnaire. Our results indicate that the authentic research experience had positive impacts on students' perception of their learning and their confidence to conduct future research. Furthermore, we believe that creation of an online repository and adoption and/or adaptation of this project across multiple researchers and institutions could speed the process of gene function prediction. PMID:26460164

  10. The varicella-zoster virus-mediated delayed host shutoff: open reading frame 17 has no major function, whereas immediate-early 63 protein represses heterologous gene expression.

    Science.gov (United States)

    Desloges, Nathalie; Rahaus, Markus; Wolff, Manfred H

    2005-12-01

    We reported that varicella-zoster virus (VZV) causes a delayed host shutoff during its replicative cycle. VZV open reading frame 17 (ORF17) is the homologue of the herpes simplex virus (HSV) UL41 gene encoding the virion host shutoff (vhs) protein which is responsible for the shutoff effect observed in HSV-infected cells. In the present study, we demonstrated that ORF17 is expressed as a late protein during the VZV replicative cycle in different infected permissive cell lines which showed a delayed shutoff of cellular RNA. A cell line with stable expression of VZV ORF17 was infected with VZV. In these cells, VZV replication and delayed host shutoff remained unchanged when compared to normal infected cells. ORF17 was not capable of repressing the expression of the beta-gal reporter gene under the control of the human cytomegalovirus immediate-early gene promoter or to inhibit the expression of a CAT reporter gene under the control of the human GAPDH promoter, indicating that ORF17 has no major function in the VZV-mediated delayed host shutoff. To determine whether other viral factors are involved in the host shutoff, a series of cotransfection assays was performed. We found that the immediate-early 63 protein (IE63) was able to downregulate the expression of reporter genes under the control of the two heterologous promoters, indicating that this viral factor can be involved in the VZV-mediated delayed host shutoff. Other factors can be also implicated to modulate the repressing action of IE63 to achieve a precise balance between the viral and cellular gene expression.

  11. Timber frame walls

    DEFF Research Database (Denmark)

    Hansen, Ernst Jan de Place; Brandt, Erik

    2010-01-01

    A ventilated cavity is usually considered good practice for removing moisture behind the cladding of timber framed walls. Timber frame walls with no cavity are a logical alternative as they are slimmer and less expensive to produce and besides the risk of a two-sided fire behind the cladding...

  12. Popcorn Story Frames from a Multicultural Perspective.

    Science.gov (United States)

    DiLella, Carol Ann

    Popcorn story frames from a multicultural perspective are holistic outlines that in the reading/writing process facilitate comprehension for all cultures learning to read and write stories. Popcorn story frames are structured and modeled in a horizontal fashion just like popcorn pops in a horizontal fashion. The frames are designed for learners…

  13. Corporal Punishment in American Education: Readings in History, Practice, and Alternatives.

    Science.gov (United States)

    Hyman, Irwin A., Ed; Wise, James H., Ed.

    Virtually all of the essays in this collection reach the conclusion that corporal punishment in the schools is counterproductive. The book is organized into sections presenting historical, psychological, and legal perspectives on this subject, as well as case studies, opinion surveys, and the results of research. Rational alternatives to the use…

  14. Mechanical Color Reading of Wood-Staining Fungal Pigment Textile Dyes: An Alternative Method for Determining Colorfastness

    Directory of Open Access Journals (Sweden)

    Eric M. Hinsch

    2016-07-01

    Full Text Available Colorfastness to washing and crocking (color loss due to rubbing are essential qualities for any dye/fabric combination that will be used for garments or upholstery. In this study, colorfastness to washing and crocking of fabrics dyed with wood-staining fungal pigments was compared to colorfastness of commercial dyes using an alternative mechanical testing method. Overall, wood-staining fungal pigments out performed commercial dyes for colorfastness to washing and wet and dry crocking. Xylindein was the most colorfast dye. Draconin red yielded inconsistent results, and the yellow pigment required a mordant to achieve any colorfastness. This study showed that the mechanical color reading method, along with statistical analysis, provided an objective, repeatable gauge of colorfastness, although visual inspection is also needed for practical purposes.

  15. Validation of analytical methods in GMP: the disposable Fast Read 102® device, an alternative practical approach for cell counting

    Directory of Open Access Journals (Sweden)

    Gunetti Monica

    2012-05-01

    Full Text Available Abstract Background The quality and safety of advanced therapy products must be maintained throughout their production and quality control cycle to ensure their final use in patients. We validated the cell count method according to the International Conference on Harmonization of Technical Requirements for Registration of Pharmaceuticals for Human Use and European Pharmacopoeia, considering the tests’ accuracy, precision, repeatability, linearity and range. Methods As the cell count is a potency test, we checked accuracy, precision, and linearity, according to ICH Q2. Briefly our experimental approach was first to evaluate the accuracy of Fast Read 102® compared to the Bürker chamber. Once the accuracy of the alternative method was demonstrated, we checked the precision and linearity test only using Fast Read 102®. The data were statistically analyzed by average, standard deviation and coefficient of variation percentages inter and intra operator. Results All the tests performed met the established acceptance criteria of a coefficient of variation of less than ten percent. For the cell count, the precision reached by each operator had a coefficient of variation of less than ten percent (total cells and under five percent (viable cells. The best range of dilution, to obtain a slope line value very similar to 1, was between 1:8 and 1:128. Conclusions Our data demonstrated that the Fast Read 102® count method is accurate, precise and ensures the linearity of the results obtained in a range of cell dilution. Under our standard method procedures, this assay may thus be considered a good quality control method for the cell count as a batch release quality control test. Moreover, the Fast Read 102® chamber is a plastic, disposable device that allows a number of samples to be counted in the same chamber. Last but not least, it overcomes the problem of chamber washing after use and so allows a cell count in a clean environment such as that in a

  16. Sparse Matrices in Frame Theory

    DEFF Research Database (Denmark)

    Lemvig, Jakob; Krahmer, Felix; Kutyniok, Gitta

    2014-01-01

    yield alternative reconstruction procedures. The novel paradigm of sparsity has recently entered the area of frame theory in various ways. Of those different sparsity perspectives, we will focus on the situations where frames and (not necessarily canonical) dual frames can be written as sparse matrices...

  17. Proliferation Response to Interleukin-2 and Jak/Stat Activation of T Cells Immortalized by Human T-Cell Lymphotropic Virus Type 1 Is Independent of Open Reading Frame I Expression

    OpenAIRE

    Collins, Nathaniel D.; D’Souza, Celine; Albrecht, Björn; Robek, Michael D.; Ratner, Lee; Ding, Wei; Green, Patrick L.; Lairmore, Michael D.

    1999-01-01

    Human T-cell lymphotropic virus type 1 (HTLV-1), a complex retrovirus, encodes a hydrophobic 12-kD protein from pX open reading frame (ORF) I that localizes to cellular endomembranes and contains four minimal SH3 binding motifs (PXXP). We have demonstrated the importance of ORF I expression in the establishment of infection and hypothesize that p12I has a role in T-cell activation. In this study, we tested interleukin-2 (IL-2) receptor expression, IL-2-mediated proliferation, and Jak/Stat act...

  18. Complete Nucleotide Sequence and Genome Organization of Hibiscus Chlorotic Ringspot Virus, a New Member of the Genus Carmovirus: Evidence for the Presence and Expression of Two Novel Open Reading Frames

    OpenAIRE

    Huang, Mei; Koh, Dora Chin-Yen; Weng, Li-Juan; Chang, Min-Li; Yap, Yun-Kiam; Zhang, Lee; Wong, Sek-Man

    2000-01-01

    The complete nucleotide sequence of hibiscus chlorotic ringspot virus (HCRSV) was determined. The genomic RNA (gRNA) is 3,911 nucleotides long and has the potential to encode seven viral proteins in the order of 28 (p28), 23 (p23), 81 (p81), 8 (p8), 9 (p9), 38 (p38), and 25 (p25) kDa. Excluding two unique open reading frames (ORFs) encoding p23 and p25, the ORFs encode proteins with high amino acid similarity to those of carmoviruses. In addition to gRNA, two 3′-coterminated subgenomic RNA (s...

  19. Open reading frame 5 (ORF5), encoding a ferredoxinlike protein, and nifQ are cotranscribed with nifE, nifN, nifX, and ORF4 in Rhodobacter capsulatus.

    OpenAIRE

    Moreno-Vivian, C; Hennecke, S; Pühler, A; Klipp, W

    1989-01-01

    DNA sequence analysis of a 1,600-base-pair fragment located downstream of nifENX in nif region A of Rhodobacter capsulatus revealed two additional open reading frames (ORFs): ORF5, encoding a ferredoxinlike protein, and nifQ. The ferredoxinlike gene product contained two cysteine motifs, typical of ferredoxins coordinating two 4Fe-4S clusters, but the distance between these two motifs was unusual for low-molecular-weight ferredoxins. The R. capsulatus nifQ gene product shared a high degree of...

  20. Diagnosis and Treatment of Reading Disabilities Based on the Component Model of Reading: An Alternative to the Discrepancy Model of LD

    Science.gov (United States)

    Aaron, P. G.; Joshi, R. Malatesha; Gooden, Regina; Bentum, Kwesi E.

    2008-01-01

    Currently, learning disabilities (LD) are diagnosed on the basis of the discrepancy between students' IQ and reading achievement scores. Students diagnosed with LD often receive remedial instruction in resource rooms. The available evidence suggests that the educational policy based on this discrepancy model has not yielded satisfactory results.…

  1. Fusion Frames and -Frames in Banach Spaces

    Indian Academy of Sciences (India)

    Amir Khosravi; Behrooz Khosravi

    2011-05-01

    Fusion frames and -frames in Hilbert spaces are generalizations of frames, and frames were extended to Banach spaces. In this article we introduce fusion frames, -frames, Banach -frames in Banach spaces and we show that they share many useful properties with their corresponding notions in Hilbert spaces. We also show that -frames, fusion frames and Banach -frames are stable under small perturbations and invertible operators.

  2. Competitive Framing

    OpenAIRE

    Ran Spiegler

    2014-01-01

    I present a simple framework for modeling two-firm market competition when consumer choice is "frame-dependent", and firms use costless "marketing messages" to influence the consumer's frame. This framework embeds several recent models in the "behavioral industrial organization" literature. I identify a property that consumer choice may satisfy, which extends the concept of Weighted Regularity due to Piccione and Spiegler (2012), and provide a characterization of Nash equilibria under this pr...

  3. Framing scales and scaling frames

    NARCIS (Netherlands)

    Lieshout, van M.; Dewulf, A.; Aarts, M.N.C.; Termeer, C.J.A.M.

    2009-01-01

    Policy problems are not just out there. Actors highlight different aspects of a situation as problematic and situate the problem on different scales. In this study we will analyse the way actors apply scales in their talk (or texts) to frame the complex decision-making process of the establishment o

  4. Discussion on college students' English Reading Skills —intensive reading and extensive reading

    Institute of Scientific and Technical Information of China (English)

    敖登

    2016-01-01

    Students are exposed to a growing amount of vocabularies and knowledge as they step into higher grades, while seem to have little improvement in their reading ability and no alternative means to realize their reading goals. Improving the English reading skills is very important for students as reading enjoys a huge ratio in an English exam paper. Talking about reading, we can not ignore these facts: reading materials, reading speed and reading skills. The followings analyzed are some common skills applied to reading-intensive reading and extensive reading as well as the obstacles that may be met while reading.

  5. Analysis of Enzymatic Digestion Pattern of Two Open Reading Frames of Varciella–Zoster Genome from Kuwaiti Patients Using the RFLP Technique

    Directory of Open Access Journals (Sweden)

    Jafar A Qasem

    2012-12-01

    Full Text Available Background and Objectives: Varicella–Zoster virus (VZV is a human herpes virus that usually attacks young children and commonly causes chicken pox (Varicella. Following primary infection, a lifelong latent infection is established. The virus often reactivates during adulthood or senesces to cause shingles (Zoster. Little is known regarding the genotypes of Varicella in Kuwait. The aim of this study was to genotype Varicella samples collected from patients in Kuwait.Materials and Methods: Samples from 60 cases of chicken pox were typed. The DNA extraction was performed using the commercially available DNA extraction kit. Two sets of oligonucleotide primers were used to amplify the intervening sequences with polymerase chain reaction to identify VZV DNA in clinical samples. The BglI and PstI endonucleases were used to digest. The PCR amplicons for PCR-RFLP typing.Results: Relatively consistent restriction enzyme digestion profiles for different VZV strains were observed. Limited genetic differences between VZV samples were found. Three VZV strains were identified (A, B and C with type B representing 86.6%, type A 11.7% and type C being 1.7%. We found that distinct restriction fragment length polymorphism isolates from the same origin or nationality were very similar.Conclusion: Varicella strains with cutting sites for both enzyme PstI and BglI (typeB were more prevalent. Molecular amplification of viral DNA by PCR and restriction digestion could be used for VZV typing as an alternative method to serological assays.

  6. Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses

    Directory of Open Access Journals (Sweden)

    Washietl Stefan

    2003-11-01

    Full Text Available Abstract Background The genome of the avian adenovirus Chicken Embryo Lethal Orphan (CELO has two terminal regions without detectable homology in mammalian adenoviruses that are left without annotation in the initial analysis. Since adenoviruses have been a rich source of new insights into molecular cell biology and practical applications of CELO as gene a delivery vector are being considered, this genome appeared worth revisiting. We conducted a systematic reannotation and in-depth sequence analysis of the CELO genome. Results We describe a strongly diverged paralogous cluster including ORF-2, ORF-12, ORF-13, and ORF-14 with an ATPase/helicase domain most likely acquired from adeno-associated parvoviruses. None of these ORFs appear to have retained ATPase/helicase function and alternative functions (e.g. modulation of gene expression during the early life-cycle must be considered in an adenoviral context. Further, we identified a cluster of three putative type-1-transmembrane glycoproteins with IG-like domains (ORF-9, ORF-10, ORF-11 which are good candidates to substitute for the missing immunomodulatory functions of mammalian adenoviruses. ORF-16 (located directly adjacent displays distant homology to vertebrate mono-ADP-ribosyltransferases. Members of this family are known to be involved in immuno-regulation and similiar functions during CELO life cycle can be considered for this ORF. Finally, we describe a putative triglyceride lipase (merged ORF-18/19 with additional domains, which can be expected to have specific roles during the infection of birds, since they are unique to avian adenoviruses and Marek's disease-like viruses, a group of pathogenic avian herpesviruses. Conclusions We could characterize most of the previously unassigned ORFs pointing to functions in host-virus interaction. The results provide new directives for rationally designed experiments.

  7. Immunogenicity and Protective Response Induced by Recombinant Plasmids Based on the BAB1_0267 and BAB1_0270 Open Reading Frames of Brucella abortus 2308 in BALB/c Mice

    Science.gov (United States)

    Gómez, Leonardo A.; Alvarez, Francisco I.; Fernández, Pablo A.; Flores, Manuel R.; Molina, Raúl E.; Coloma, Roberto F.; Oñate, Angel A.

    2016-01-01

    Immunogenicity induced by recombinant plasmids based on the BAB1_0267 and BAB1_0270 open reading frames (ORFs) of Brucella abortus 2308 was evaluated. Bioinformatics analyses indicate that the BAB1_0267 and BAB1_0270 ORFs encode a protein with a SH3 domain and a Zn-dependent metalloproteinase, respectively. Both ORFs have important effects on intracellular survival and replication of B. abortus 2308, mediated via professional and non-professional phagocytic cells. Our results show that immunization with the recombinant plasmid based on the BAB1_0267 ORF significantly increases the production of IgG1, levels of IFN-γ and the lymphoproliferative response of splenocytes. However, BAB1_0267 did not provide significant levels of protection. The plasmid based on the BAB1_0270 significantly increased IgG2a production, levels of IFN-γ and TNF-α, and the lymphoproliferative response of splenocytes. These results demonstrate that immunization with the BAB1_0270 derived recombinant plasmid induce a Th1-type immune response, correlated with a heightened resistance to B. abortus 2308 infection in mice. It is concluded that the Th1-type immune response against bacterial Zn-dependent metalloproteinase induces a protective response in mice, and that pV270 recombinant plasmid is an effective candidate microbicide against brucellosis. PMID:27747197

  8. Open reading frame 5 (ORF5), encoding a ferredoxinlike protein, and nifQ are cotranscribed with nifE, nifN, nifX, and ORF4 in Rhodobacter capsulatus.

    Science.gov (United States)

    Moreno-Vivian, C; Hennecke, S; Pühler, A; Klipp, W

    1989-05-01

    DNA sequence analysis of a 1,600-base-pair fragment located downstream of nifENX in nif region A of Rhodobacter capsulatus revealed two additional open reading frames (ORFs): ORF5, encoding a ferredoxinlike protein, and nifQ. The ferredoxinlike gene product contained two cysteine motifs, typical of ferredoxins coordinating two 4Fe-4S clusters, but the distance between these two motifs was unusual for low-molecular-weight ferredoxins. The R. capsulatus nifQ gene product shared a high degree of homology with Klebsiella pneumoniae and Azotobacter vinelandii NifQ, including a typical cysteine motif located in the C-terminal part. nifQ insertion mutants and also an ORF5-nifQ double deletion mutant showed normal diazotrophic growth only in the presence of high concentrations of molybdate. This demonstrated that the gene encoding the ferredoxinlike protein is not essential for nitrogen fixation. No NifA-activated consensus promoter could be found in the intergenic region between nifENX-ORF4 and ORF5-nifQ. Analyses of a nifQ-lacZYA fusion revealed that transcription of nifQ was initiated at a promoter in front of nifE. In contrast to other nitrogen-fixing organisms, R. capsulatus nifE, nifN, nifX, ORF4, ORF5, and nifQ were organized in one transcriptional unit. PMID:2708314

  9. Viral culture and p24 antigenemia of human immunodeficiency virus (HIV)-infected individuals correlated with antibody profiles determined with recombinant polypeptides of all HIV-1 open-reading frames.

    Science.gov (United States)

    Baur, A; Vornhagen, R; Korn, K; Sonneborn, H H; Eberlein, B; Harrer, T; Brockhaus, W; Jahn, G

    1992-03-01

    The association between viral activity and antibody profiles was investigated in 202 individuals infected by the human immunodeficiency virus (HIV) grouped according to their Walter Reed clinical stage. Each study group was subdivided into subjects positive or negative for markers of active viral replication: presence of serum p24 antigen and viral culture. In Western blots using recombinant antigens, sera of HIV-positive individuals with positive viral markers had a significantly lower antibody reactivity to several viral proteins than did individuals without viral markers. Noticeably, proteins of the gag (p24, p17) and env (gp120, COOH-terminal part of gp41) open-reading frames revealed a decreased reactivity. The antibody response to the regulatory proteins revealed no or poor association with viral activity in the host. The results suggest that seroreactivity is mainly influenced by factors reflecting the viral activity of an HIV-infected individual, while the clinical stage of the patient is less important. Especially, reductions in antibodies against gp120 and p17 were useful markers associated with increased viral activity. PMID:1371534

  10. Framing Fragmentation

    DEFF Research Database (Denmark)

    Bundgaard, Charlotte

    2009-01-01

    developments within the construction sector imply a marginalized role for the architect, this strategy suggests a strong repositioning. In Danish building practice the construction industry is increasingly organized within terms like ”systemized prefab delivery” and ”digital building”. The building is divided...... into separate parts or systems: skeleton, skin, services, internal cladding, etc. Each building part/system is being conceived, produced, delivered and maintained by different construction companies. Basically the building is being fragmented into separate parts living their separate lives. The architect has...... to create architectural meaning and give character to an architecture of fragmentation. Layers are both seen as conceptual as well as material frames which define certain strong properties or meanings in the architectural work. Defining layers is a way of separating and organizing; it both defines...

  11. Frames and counter-frames giving meaning to dementia: a framing analysis of media content.

    Science.gov (United States)

    Van Gorp, Baldwin; Vercruysse, Tom

    2012-04-01

    Media tend to reinforce the stigmatization of dementia as one of the most dreaded diseases in western society, which may have repercussions on the quality of life of those with the illness. The persons with dementia, but also those around them become imbued with the idea that life comes to an end as soon as the diagnosis is pronounced. The aim of this paper is to understand the dominant images related to dementia by means of an inductive framing analysis. The sample is composed of newspaper articles from six Belgian newspapers (2008-2010) and a convenience sample of popular images of the condition in movies, documentaries, literature and health care communications. The results demonstrate that the most dominant frame postulates that a human being is composed of two distinct parts: a material body and an immaterial mind. If this frame is used, the person with dementia ends up with no identity, which is in opposition to the Western ideals of personal self-fulfilment and individualism. For each dominant frame an alternative counter-frame is defined. It is concluded that the relative absence of counter-frames confirms the negative image of dementia. The inventory might be a help for caregivers and other professionals who want to evaluate their communication strategy. It is discussed that a more resolute use of counter-frames in communication about dementia might mitigate the stigma that surrounds dementia. PMID:22386639

  12. Open reading frame 3 of genotype 1 hepatitis E virus inhibits nuclear factor-κappa B signaling induced by tumor necrosis factor-α in human A549 lung epithelial cells.

    Directory of Open Access Journals (Sweden)

    Jian Xu

    Full Text Available Hepatitis E virus (HEV is one of the primary causative agents of acute hepatitis, and represents a major cause of severe public health problems in developing countries. The pathogenesis of HEV is not well characterized, however, primarily due to the lack of well-defined cell and animal models. Here, we investigated the effects of genotype 1 HEV open reading frame 3 (ORF3 on TNF-α-induced nucleus factor-κappa B (NF-κB signaling. Human lung epithelial cells (A549 were transiently transfected with ORF3 containing plasmids. These cells were then stimulated with TNF-α and the nucleus translocation of the p65 NF-κB subunit was assessed using western blot and laser confocal microscopy. DNA-binding activity of p65 was also examined using electrophoretic mobility shift assay (EMSA, and the suppression of NF-κB target genes were detected using real-time RT-PCR and ELISA. These results enabled us to identify the decreased phosphorylation levels of IKBα. We focused on the gene of negative regulation of NF-κB, represented by TNF-α-induced protein 3 (TNFAIP3, also known as A20. Reducing the levels of A20 with siRNAs significantly enhances luciferase activation of NF-κB. Furthermore, HEV ORF3 regulated A20 primarily via activating transcription factor 6 (ATF6, involved in unfolded protein response (UPR, resulting in the degradation or inactivation of the receptor interacting protein 1 (RIP1, a major upstream activator of IKB kinase compounds (IKKs. Consequently, the phosphorylation of IKBα and the nucleus translocation of p65 are blocked, which contributes to diminished NF-κB DNA-binding activation and NF-κB-dependent gene expression. The findings suggest that genotype 1 HEV, through ORF3, may transiently activate NF-κB through UPR in early stage, and subsequently inhibit TNF-α-induced NF-κB signaling in late phase so as to create a favorable virus replication environment.

  13. Adding Extras for Reading Achievement.

    Science.gov (United States)

    Solo, Len

    1999-01-01

    A Cambridge, Massachusetts, alternative public school's basic reading program is a rich combination of whole language and individualized phonics. Other strategies to hook kids on reading include 20-minute recreational reading periods with parent volunteers, a weekly book-bag program, reading buddies, special projects, and community helpers from…

  14. Prime tight frames

    DEFF Research Database (Denmark)

    Lemvig, Jakob; Miller, Christopher; Okoudjou, Kasso A.

    2014-01-01

    to suggest effective analysis and synthesis computation strategies for such frames. Finally, we describe all prime frames constructed from the spectral tetris method, and, as a byproduct, we obtain a characterization of when the spectral tetris construction works for redundancies below two.......We introduce a class of finite tight frames called prime tight frames and prove some of their elementary properties. In particular, we show that any finite tight frame can be written as a union of prime tight frames. We then characterize all prime harmonic tight frames and use thischaracterization...

  15. Approximately dual frames in Hilbert spaces and applications to Gabor frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Laugesen, Richard S.

    2011-01-01

    Approximately dual frames are studied in the Hilbert space setting. Approximate duals are easier to construct than classical dual frames, and can be tailored to yield almost perfect reconstruction. Bounds on the deviation from perfect reconstruction are obtained for approximately dual frames...... constructed via perturbation theory. An alternative bound is derived for the rich class of Gabor frames, by using the Walnut representation of the frame operator to estimate the deviation from equality in the duality conditions. To illustrate these results, we construct explicit approximate duals of Gabor...

  16. Nucleotide sequence and mutational analysis of the structural genes (anfHDGK) for the second alternative nitrogenase from Azotobacter vinelandii.

    OpenAIRE

    Joerger, R D; Jacobson, M R; Premakumar, R; Wolfinger, E D; Bishop, P E

    1989-01-01

    The nucleotide sequence of a region of the Azotobacter vinelandii genome exhibiting sequence similarity to nifH has been determined. The order of open reading frames within this 6.1-kilobase-pair region was found to be anfH (alternative nitrogen fixation, nifH-like gene), anfD (nifD-like gene), anfG (potentially encoding a protein similar to the product of vnfG from Azotobacter chroococcum), anfK (nifK-like gene), followed by two additional open reading frames. The 5'-flanking region of anfH ...

  17. Relationship between open reading frame 26 subtypes in human herpesvirns-8 and Kaposi's sarcoma%人类疱疹病毒8型ORF26基因亚型与Kaposi肉瘤的相关性研究

    Institute of Scientific and Technical Information of China (English)

    吴秀娟; 普雄明; 吴卫东

    2008-01-01

    Objective To learn the subtypes of open reading frame 26 (ORF26) of human herpesvirus 8 (HHV-8) in patients with Kaposi's sarcoma, and to evaluate the relationship of ORF26 subtypes to clinical types and invasiveness of Kaposi's sarcoma. Methods Thirty-two paraffin-embeded tissue speci-mens of Kaposi's sarcoma were collected in the Department of Dermatology, People's Hospital of Xinjiang Uygur Autonomous Region, from 1996 to 2007. DNA was extracted from these specimens, nested-PCR was used to amplify HHV-8 DNA. PCR products were subjected to bi-directional sequencing after extraction from agarose gels. Phylogenetic analysis was carded out by using the software DNAStar, program Clustal W and PHYLIP package for the determination of ORF26 subtype. Fisher's exact test was performed to evaluate the relationship of ORF26 subtypes to clinical types and invasiveness of Kaposi's sarcoma. Results Of the 32 specimens, 30 were positive for HHV-8 DNA with a positivity rate of 93.75%, and 6 specimens of AIDS related Kaposi's sarcoma were all positive. ORF26 A subtype was detected in the HHV-8 DNA of 17 posi-tive specimens, and C subtype in that of other 13 specimens. Neither the incidence of mucosal lesions nor the distribution of clinical subtypes was of significant difference between patients with ORF26 A subtype and those with ORF26 C subtype (both P > 0.05). Conclusions A and C may be the predominate subtypes of ORF 26 in HHV-8 of patients with Kaposi's sarcoma, and the ORF26 subtype is unrelated to the presence of mucosal lesions in or the clinical types of patients with Kaposi's sarcoma.%目的 明确Kaposi肉瘤患者感染的人类疱疹病毒8型(HHV-8)ORF26基因亚型分类,初步探讨其与Kaposi肉瘤不同临床分型及侵袭性的相关性.方法 对32例Kaposi肉瘤石蜡包埋组织进行HHV-8 DNA抽提、扩增、双向测序,使用DNAStar软件、Clustal W软件和PHYLIP软件包对测序结果进行系统发生学分析,从而确定HHV-8 ORF26基因亚型,

  18. Production of Antibody to Open Reading Frame 3 of Porcine Circovirus Type Ⅱ by DNA Vaccination%DNA免疫法制备猪圆环病毒Ⅱ型ORF3抗体

    Institute of Scientific and Technical Information of China (English)

    谢俊岭; 耿美鸽; 吴迪; 卻小宁; 周双海

    2012-01-01

    The aim of this study was to produce the antibody against the protein of open reading frame 3 (ORF3) of porcine circovirus type II (PCV2), and lay foundation for research on ORF3 function. The ORF3 gene of PCV2 was amplified by PCR method, and the PCR product was digested by restriction enzyme EcoR I and Xho I. Meanwhile, the eukaryotic expression vector pCDNA3.1 (+) was digested by EcoR I and Xho I too. Then, the two expected products digested were ligated, and the transformation in the competent cells of E.coli DHSa was conducted. The results of colony PCR and sequence analysis showed that the recombinant expression vector pCDNA3.1-PCV2 ORF3 was constructed successfully. Thereafter, several BALB/c mice were inoculated with the recombinant plasmid constructed, and the specificity and titer of the antibody to PCV2 ORF3 were detected by immunofluorescence assay (IFA). The IFA results demonstrated that the sera collected from the mice inoculated with the recombinant plasmid PCV2 ORF3 were the antibodies specific to PCV2 ORF3. Also, the IFA results showed that the antibody titer of PCV2 0RF3 in the sera of mice were all more than l:25 after 4 times inoculation, which indicated that the antibodies against PCV2 ORF3 with relatively high titer was successfully produced. The research results revealed that the antibody to PCV2 ORF3 could be produced quickly and simply by vaccination of plasmid DNA, and this provided a new effective way to the production of the antibodies to PCV2 ORF3.%为了制备猪圆环病毒Ⅱ型(PCV2)开放阅读框3(ORF3)蛋白的抗体,并为ORF3功能研究奠定基础,用PCR方法扩增PCV2 ORF3基因,对其PCR产物用EcoRI与XhoI进行酶切,并对真核表达载体pCDNA3.1(+)进行同样酶切,连接2种目的酶切产物后转化E.coliDH5a感受态,茵落PCR和序列测定结果显示成功构建出重组质粒pCDNA3.1-PCV2ORF3.将该重组质粒接种BALB/c小鼠,用间接免疫荧光(IFA)检测小鼠血清PCV2 ORF3抗体的特异性

  19. About Reading

    Institute of Scientific and Technical Information of China (English)

    独行墨客

    2004-01-01

    As for reading and for learning, reading rate (that is, words per minute, WPM) is important, especially for students who have to pass some reading test. How to compute your reading rate? You may know it after reading the following. Reading Rate (WPM) = Total number of words + reading time.

  20. Videotaped Oral Reading Fluency Lab: An Alternative Approach to One-on-One Interventions for Intermediate Elementary Students with Learning Disabilities

    Science.gov (United States)

    Christner, Beth Anne Reside

    2009-01-01

    The ability to read aloud fluently is a reflection of one's ability to automatically decode words and comprehend text at the same time (Samuels, 2006), a task which may be difficult for many intermediate elementary students with learning disabilities (LD) (Ferrara, 2005). Previous research shows that audio-assisted repeated readings and…

  1. Filter Bank Fusion frames

    OpenAIRE

    Chebira, Amina; Fickus, Matthew; Mixon, Dustin G.

    2011-01-01

    In this paper we characterize and construct novel oversampled filter banks implementing fusion frames. A fusion frame is a sequence of orthogonal projection operators whose sum can be inverted in a numerically stable way. When properly designed, fusion frames can provide redundant encodings of signals which are optimally robust against certain types of noise and erasures. However, up to this point, few implementable constructions of such frames were known; we show how to construct them using ...

  2. Human cytomegalovirus UL144 open reading frame: sequence variability in Guangzhou congenital infected children%广州地区HCMV临床病毒株UL144 ORF的序列变异研究

    Institute of Scientific and Technical Information of China (English)

    王波; 李月琴; 叶宁; 胡兢晶; 何震宇; 田传军; 张纯青; 叶铁真; 周天鸿

    2008-01-01

    目的 研究广州地区先天性感染的人巨细胞病毒(HCMV)临床低传代分离病毒株UL144基因序列的多态性,探讨UL144基因在HCMV致病中的作用.方法 对3株经多重PCR鉴定HCMV DNA为阳性的临床低传代分离株进行HCMV UL144基因全序列PCR扩增,PCR产物克隆到pMD18-T载体上再测序,将其序列与GenBank中公布的其它10株临床分离株UL144基因一起进行分析.结果 本实验克隆并测序了HCMV临床低传代D3、D2和D52病毒株的UL144基因,提交GenBank,已被GenBank收录,序列号分别为DQ180368、DQ180382和DQ180355.HCMV临床低传代D3、D2和D52病毒株的UL144基因均全长531 bp.通过blast分析,从GenBank中找到了10株HCMV病毒株的UL144与D3、D2和D52的UL144基因具有较高的同源性,经过序列的比对,发现UL144基因DNA序列比较保守,只在4处有变异,且变异均为碱基替换,无插入或缺失,编码蛋白由176个氨基酸残基组成,氨基酸序列也比较保守,各分离株中变异率为1.1%;HCMV UL144编码蛋白翻译后修饰位点在所有分离株中均高度保守;所有分离株UL144蛋白的等电点均为8.97.结论 广州地区临床低传代分离株HCMV UL144基因DNA及其编码产物的氨基酸序列是比较保守的,但仍存在一定的多态性.提示UL144基因在先天性感染中可能具有重要作用.%Objective To investigate the polymorphism of human cytomegalovirus (HCMV) UL144 gene of the low passage clinical isolates in Guangzhou and explore the role of UL144 gene in HCMV pathogenicity. Methods The clinical isolates of HCMV were obtained from the urine sample collected from those infants with intra-uterus HCMV infection in Guangzhou. The virus genome DNA was extracted. According to the genome sequence of Toledo, primers for UL144 gene were designed and used to amplify the complete open reading frames (ORF) of the UL144 gene in our 3 different clinical isolates. These ORFs of the UL144 gene were cloned into pMD18-T vector

  3. MAKING STUDENTS’ FRAMES EXPLICIT

    DEFF Research Database (Denmark)

    Nielsen, Louise Møller; Hansen, Poul Henrik Kyvsgaard

    2016-01-01

    Framing is a vital part of the design and innovation process. Frames are cognitive shortcuts (i.e. metaphors) that enable designers to connect insights about i.e. market opportunities and users needs with a set of solution principles and to test if this connection makes sense. Until now, framing...... shows that the quality of team projects is correspondent with the number iterations of the project framing. However, there is no research that point to how more iterations on the project framing can be created, or how we as supervisors/teachers can support this process. This research project explores...... the effect of encouraging students to make their project frames explicit during the development of a conceptual design. The students were divided into two different groups. The first group made notations on their framing process (either occasionally or everyday) the other group did not. The study did...

  4. Dynamics of students' epistemological framing in group problem solving

    CERN Document Server

    Nguyen, Hai D; Sayre, Eleanor C

    2016-01-01

    Many studies have investigated students' epistemological framing when solving physics problems. Framing supports students' problem solving as they decide what knowledge to employ and the necessary steps to solve the problem. Students may frame the same problem differently and take alternate paths to a correct solution. When students work in group settings, they share and discuss their framing to decide how to proceed in problem solving as a whole group. In this study, we investigate how groups of students negotiate their framing and frame shifts in group problem solving.

  5. On the interaction between media frames and individual frames of the Israeli-Palestinian conflict

    Directory of Open Access Journals (Sweden)

    Wilhelm Kempf

    2012-10-01

    Full Text Available The present paper reports on a media effects research experiment in which six groups of participants were asked to read and evaluate differently framed news articles about two scenarios: a Palestinian attack on Israel and an Israeli military operation against Palestinians. The experimental results show that media peace frames of violent events in the Israeli-Palestinian conflict are generally regarded by the German public as more comprehensible, less biased, more balanced and less partisan than media war frames of the same events. The specific ways in which recipients respond to the frames, however, depend on their prior knowledge of the conflict, on their positioning to the conflict and on their sensitivity to the ambivalence of war and peace for both Israel and the Palestinians. This supports the hypothesis that neither news selection nor framing have uniform effects on public opinion.

  6. IRREGULAR WAVELET FRAMES AND GABOR FRAMES

    Institute of Scientific and Technical Information of China (English)

    Ole Christensen; Sergio Favier; Felipe Zó

    2001-01-01

    Given g ∈ L2 (R), we consider irregular wavelet systems of theform {λ g(λj x-kb) }j z. kz, where λj >0 and b>0. Sufficient conditions for the wavelet system to constitute a frame for L2(R) are given. For a class of functions g ∈ L 2 (R) we prove that certain growth conditions on {λj} will lead to frames, and that some other types of sequences exclude the frame property. We also give a sufficient condition for a Gabor system {exib(j,x)g(x-λh)}jzn,kz to be a frame.CLC Number:O17 Document ID:AAuthor Resume:Ole Christensen;E-mail: Ole. Christensen@mat. dtu. dk Sergio Favier and Felipe Zó ;e-mails : sfavier@unsl. edu. ar fzo@unsl. edu. ar References:[1]Casaza,P.G. and Christensen,O.,Weyl-Heisenberg Frames for Subspaces of L2(R),Proc.Amer. Math. Soc. ,129(2001),145-154.[2]Casazza,P.G. and Christensen,O. ,Classifying Certain Irregular Gabor Frames,preprint[2]001.[3]Christensen,O. and Lindner,A. ,Lower Bounds for Finite Wavelet and Gabor Systems,Appr. Theory and Appl.,17(2001),17-31.[4]Chui,C.K. and Shi,X. ,Inequalities of Litdewood-Paley Type for Frames and Wavelets,SIAM J. Math. Anal. ,24:1(1993),263-277.[5]Daubechies,I. ,Ten Lectures on Wavelets,SIAM,Philadelphia,1992.[6]Favier,S. and Zalik,R. ,On the Stability of Frames and Riesz Bases,Appl. Comp. Ham.Anal. ,2(1995),160-173.[7]Feichtinger,H.G. and Strohmer,T. ,(Eds.),Gabor Analysis and Algorithms : Theory and Applications,Birkhauser,1998.[8]Heil,C.E. and Walnut,D.F. ,Continuous and Discrete Wavelet Transforms,SIAM Review,31:4(1989),628-666.[9]Sun,W. and Zhou,X. ,Irregular Wavelet Frames,Science in China (Series A),43:2(2000),122-127.Manuscript Received:2001年7月10日Manuscript Revised:2001年7月23日Published:2001年9月1日

  7. Changing climate, changing frames

    International Nuclear Information System (INIS)

    Highlights: ► We show development of flood policy frames in context of climate change attention. ► Rising attention on climate change influences traditional flood policy framing. ► The new framing employs global-scale scientific climate change knowledge. ► With declining attention, framing disregards climate change, using local knowledge. ► We conclude that frames function as sensemaking devices selectively using knowledge. -- Abstract: Water management and particularly flood defence have a long history of collective action in low-lying countries like the Netherlands. The uncertain but potentially severe impacts of the recent climate change issue (e.g. sea level rise, extreme river discharges, salinisation) amplify the wicked and controversial character of flood safety policy issues. Policy proposals in this area generally involve drastic infrastructural works and long-term investments. They face the difficult challenge of framing problems and solutions in a publicly acceptable manner in ever changing circumstances. In this paper, we analyse and compare (1) how three key policy proposals publicly frame the flood safety issue, (2) the knowledge referred to in the framing and (3) how these frames are rhetorically connected or disconnected as statements in a long-term conversation. We find that (1) framings of policy proposals differ in the way they depict the importance of climate change, the relevant timeframe and the appropriate governance mode; (2) knowledge is selectively mobilised to underpin the different frames and (3) the frames about these proposals position themselves against the background of the previous proposals through rhetorical connections and disconnections. Finally, we discuss how this analysis hints at the importance of processes of powering and puzzling that lead to particular framings towards the public at different historical junctures

  8. Reading faster

    OpenAIRE

    Paul Nation

    2009-01-01

    This article describes the visual nature of the reading process as it relates to reading speed. It points out that there is a physical limit on normal reading speed and beyond this limit the reading process will be different from normal reading where almost every word is attended to. The article describes a range of activities for developing reading fluency, and suggests how the development of fluency can become part of a reading programme.

  9. Frame independent cosmological perturbations

    Energy Technology Data Exchange (ETDEWEB)

    Prokopec, Tomislav; Weenink, Jan, E-mail: t.prokopec@uu.nl, E-mail: j.g.weenink@uu.nl [Institute for Theoretical Physics and Spinoza Institute, Utrecht University, Leuvenlaan 4, 3585 CE Utrecht (Netherlands)

    2013-09-01

    We compute the third order gauge invariant action for scalar-graviton interactions in the Jordan frame. We demonstrate that the gauge invariant action for scalar and tensor perturbations on one physical hypersurface only differs from that on another physical hypersurface via terms proportional to the equation of motion and boundary terms, such that the evolution of non-Gaussianity may be called unique. Moreover, we demonstrate that the gauge invariant curvature perturbation and graviton on uniform field hypersurfaces in the Jordan frame are equal to their counterparts in the Einstein frame. These frame independent perturbations are therefore particularly useful in relating results in different frames at the perturbative level. On the other hand, the field perturbation and graviton on uniform curvature hypersurfaces in the Jordan and Einstein frame are non-linearly related, as are their corresponding actions and n-point functions.

  10. Filter Bank Fusion Frames

    CERN Document Server

    Chebira, Amina; Mixon, Dustin G

    2010-01-01

    In this paper we characterize and construct novel oversampled filter banks implementing fusion frames. A fusion frame is a sequence of orthogonal projection operators whose sum can be inverted in a numerically stable way. When properly designed, fusion frames can provide redundant encodings of signals which are optimally robust against certain types of noise and erasures. However, up to this point, few implementable constructions of such frames were known; we show how to construct them using oversampled filter banks. In this work, we first provide polyphase domain characterizations of filter bank fusion frames. We then use these characterizations to construct filter bank fusion frame versions of discrete wavelet and Gabor transforms, emphasizing those specific finite impulse response filters whose frequency responses are well-behaved.

  11. Reference frames and refbits

    CERN Document Server

    Van Enk, S J

    2004-01-01

    We define a new quantity called refbit, which allows one to quantify the resource of sharing a reference frame in quantum communication protocols. By considering various protocols we find relations between refbits and other resources such as cbits, ebits, cobits, and qubits. We also consider the same resources in encoded, reference-frame independent, form. This allows one to rephrase and unify previous work on phase references, reference frames, and superselection rules.

  12. Discretization of Continuous Frame

    Indian Academy of Sciences (India)

    A Fattahi; H Javanshiri

    2012-05-01

    In this paper we consider the notion of continuous frame of subspaces and define a new concept of continuous frame, entitled continuous atomic resolution of identity, for arbitrary Hilbert space $\\mathcal{H}$ which has a countable reconstruction formula. Among the other results, we characterize the relationship between this new concept and other known continuous frames. Finally, we state and prove the assertions of the stability of perturbation in this concept.

  13. Soul of the Documentary. Framing, Expression, Ethics

    OpenAIRE

    Hongisto, Ilona

    2015-01-01

    ‘Soul of the Documentary’ offers a groundbreaking new approach to documentary cinema. Ilona Hongisto stirs current thinking by suggesting that the work of documentary films is not reducible to representing what already exists. By close-reading a diverse body of films - from ‘The Last Bolshevik’ to ‘Grey Gardens’ - Hongisto shows how documentary cinema intervenes in the real by framing it and creatively contributes to its perpetual unfolding. The emphasis on framing brings new urgency to the d...

  14. Framings and dilations

    OpenAIRE

    Larson, David R.; Szafraniec, Franciszek Hugon

    2013-01-01

    The notion of framings, recently emerging in P. G. Casazza, D. Han, and D. R. Larson, Frames for Banach spaces, in {\\em The functional and harmonic analysis of wavelets and frames} (San Antonio, TX, 1999), {\\em Contemp. Math}. {\\bf 247} (1999), 149-182 as generalization of the reconstraction formula generated by pairs of dual frames, is in this note extended substantially. This calls on refining the basic dilation results which still being in the flavor of {\\em th\\'eor\\`eme principal} of B. S...

  15. An Alternative to Language Learner Dependence on L2 Caption-Reading Input for Comprehension of Sitcoms in a Multimedia Learning Environment

    Science.gov (United States)

    Li, C.-H.

    2014-01-01

    Most second/foreign language (L2) learners have difficulty understanding listening input because of its implicit and ephemeral nature, and they typically have better reading comprehension than listening comprehension skills. This study examines the effects of using an interactive advance-organizer activity on the DVD video comprehension of L2…

  16. Irregular wavelet frames

    Institute of Scientific and Technical Information of China (English)

    孙文昌; 周性伟

    2000-01-01

    For the non-band-limited function ψ, a sufficient condition is presented under whichis a frame for L2(R). The stability of these frames is studied. For the wavelets frequently used in signal processing, some concrete results are given.

  17. Modern Steel Framed Schools.

    Science.gov (United States)

    American Inst. of Steel Construction, Inc., New York, NY.

    In view of the cost of structural framing for school buildings, ten steel-framed schools are examined to review the economical advantages of steel for school construction. These schools do not resemble each other in size, shape, arrangement or unit cost; some are original in concept and architecture, and others are conservative. Cost and…

  18. Associations between reading achievement and independent reading in early elementary school: A genetically-informative cross-lagged study

    OpenAIRE

    Harlaar, Nicole; Deater-Deckard, Kirby; Thompson, Lee A.; DeThorne, Laura S.; Petrill, Stephen A.

    2011-01-01

    This study used a cross-lagged twin design to examine reading achievement and independent reading from 10 to 11 years (n = 436 twin pairs). Reading achievement at age 10 significantly predicted independent reading at age 11. The alternative path, from independent reading at age 10 to reading achievement at age 11, was not significant. Individual differences in reading achievement and independent reading at both ages were primarily due to genetic influences. Furthermore, individual differences...

  19. Reading Comics

    Science.gov (United States)

    Tilley, Carol L.

    2008-01-01

    Many adults, even librarians who willingly add comics to their collections, often dismiss the importance of comics. Compared to reading "real" books, reading comics appears to be a simple task and compared to reading no books, reading comics might be preferable. After all, comics do have words, but the plentiful pictures seem to carry most of the…

  20. Celestial Reference Frames

    Science.gov (United States)

    Jacobs, Christopher S.

    2013-03-01

    Concepts and Background: This paper gives an overview of modern celestial reference frames as realized at radio frequencies using the Very Long baseline Interferometry (VLBI) technique. We discuss basic celestial reference frame concepts, desired properties, and uses. We review the networks of antennas used for this work. We briefly discuss the history of the science of astrometry touching upon the discovery of precession, proper motion, nutation, and parallax, and the field of radio astronomy. Building Celestial Frames: Next, we discuss the multi-step process of building a celestial frame: First candidate sources are identified based on point-like properties from single dish radio telescopes surveys. Second, positions are refined using connected element interferometers such as the Very Large Array, and the ATCA. Third, positions of approximately milli-arcsecond (mas) accuracy are determined using intercontinental VLBI surveys. Fourth, sub-mas positions are determined by multiyear programs using intercontinental VLBI. These sub-mas sets of positions are then verified by multiple teams in preparation for release to non-specialists in the form of an official IAU International Celestial Reference Frame (ICRF). The process described above has until recently been largely restricted to work at S/X-band (2.3/8.4 GHz). However, in the last decade sub-mas work has expanded to include celestial frames at K-band (24 GHz), Ka-band (32 GHz), and Q-band (43 GHz). While these frames currently have the disadvantage of far smaller data sets, the astrophysical quality of the sources themselves improves at these higher frequencies and thus make these frequencies attractive for realizations of celestial reference frames. Accordingly, we review progress at these higher frequency bands. Path to the Future: We discuss prospects for celestial reference frames over the next decade. We present an example of an error budget for astrometric VLBI and discuss the budget's use as a tool for

  1. Celestial Reference Frame

    Science.gov (United States)

    Jacobs, Christopher S.

    2013-09-01

    Concepts and Background: This paper gives an overview of modern celestial reference frames as realized at radio frequencies using the Very Long baseline Interferometry (VLBI) technique. We discuss basic celestial reference frame concepts, desired properties, and uses. We review the networks of antennas used for this work. We briefly discuss the history of the science of astrometry touching upon the discovery of precession, proper motion, nutation, and parallax, and the field of radio astronomy. Building Celestial Frames: Next, we discuss the multi-step process of building a celestial frame: First candidate sources are identified based on point-like properties from single dish radio telescopes surveys. Second, positions are refined using connected element interferometers such as the Very Large Array, and the ATCA. Third, positions of approximately milli-arcsecond (mas) accuracy are determined using intercontinental VLBI surveys. Fourth, sub-mas positions are determined by multiyear programs using intercontinental VLBI. These sub-mas sets of positions are then verified by multiple teams in preparation for release to non-specialists in the form of an official IAU International Celestial Reference Frame (ICRF). The process described above has until recently been largely restricted to work at S/X-band (2.3/8.4 GHz). However, in the last decade sub-mas work has expanded to include celestial frames at K-band (24 GHz), Ka-band (32 GHz), and Q-band (43 GHz). While these frames currently have the disadvantage of far smaller data sets, the astrophysical quality of the sources themselves improves at these higher frequencies and thus make these frequencies attractive for realizations of celestial reference frames. Accordingly, we review progress at these higher frequency bands. Path to the Future: We discuss prospects for celestial reference frames over the next decade. We present an example of an error budget for astrometric VLBI and discuss the budget's use as a tool for

  2. Framing French Culture

    OpenAIRE

    Edwards, Natalie; McCann, Ben; Poiana, Peter

    2015-01-01

    Throughout this book, the concept of framing is used to look at art, photography, scientific drawings and cinema as visually constituted, spatially bounded productions. The way these genres relate to that which exists beyond the frame, by means of plastic, chemically transposed, pencil-sketched or moving images allows us to decipher the particular language of the visual and at the same time circumscribe the dialectic between presence and absence that is proper to all visual media. Yet, these ...

  3. On transforms between Gabor frames and wavelet frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Goh, Say Song

    2013-01-01

    We describe a procedure that enables us to construct dual pairs of wavelet frames from certain dual pairs of Gabor frames. Applying the construction to Gabor frames generated by appropriate exponential Bsplines gives wavelet frames generated by functions whose Fourier transforms are compactly...... supported splines with geometrically distributed knot sequences. There is also a reverse transform, which yields pairs of dual Gabor frames when applied to certain wavelet frames....

  4. Type of frame dependence: variation in media frames affecting attitudes via audience frames

    NARCIS (Netherlands)

    A.S. van Drunen; H.G. Boomgaarden; R. Vliegenthart

    2012-01-01

    In this paper two suggested processes of framing theory (Scheufele, 1999) are tested: frame setting (media affecting audience frames) and the individual effects process (audience frames affecting attitudes or behavior). Media frames may affect opinions and behavior, however these effects are not dir

  5. The structure of an alternate form of complement C3 that displays costimulatory growth factor activity for B lymphocytes

    OpenAIRE

    1994-01-01

    In this study, the structure of a novel 1.9-kb transcript coding for complement component 3 (C3) is described. This alternate C3 is identical to the 3' end of the C3 message beginning at position 3300 of the C3 cDNA. Its transcription appears to be driven by an alternate promoter located within intron 8 of the C3 gene. This alternate C3 message contains an open reading frame that may encode a 536-amino acid- long protein identical to the 3' part of the C3 alpha chain. The resulting protein co...

  6. Found-Footage Horror and the Frame's Undoing

    OpenAIRE

    Sayad, Cecilia

    2016-01-01

    This essay finds in the found-footage horror cycle an alternative way of understanding the relationship between horror films and reality, which is usually discussed in terms of allegory. I propose the investigation of framing, understood both figuratively (framing the film as documentary) and stylistically (the framing in handheld cameras and in static long takes), as a device that playfully de-stabilizes the separation between the film and the surrounding world. The essay’s main case study i...

  7. Wavelet frames and their duals

    DEFF Research Database (Denmark)

    Lemvig, Jakob

    2008-01-01

    frames with good time localization and other attractive properties. Furthermore, the dual wavelet frames are constructed in such a way that we are guaranteed that both frames will have the same desirable features. The construction procedure works for any real, expansive dilation. A quasi-affine system...... it is essential to have a dual frame with the same structure, but this is not always the case. We explore the relationship between dual frames of a wavelet frame. We show the existence of a "nice" wavelet frame for which the canonical choice of a dual frame is not a wavelet system. At the same time, this "nice...

  8. Design concepts for low-cost composite turbofan engine frame

    Science.gov (United States)

    Mitchell, S. C.; Stoffer, L. J.

    1980-01-01

    Design concepts for low cost, lightweight composite engine frames were applied to the design requirements for the frame of a commercial, high bypass engine. Four alternative composite frame design concepts identified which consisted of generic type components and subcomponents that could be adapted to use in different locations in the engine and the different engine sizes. A variety of materials and manufacturing methods were projected with a goal for the lowest number of parts at the lowest possible cost. After a preliminary evaluation of all four frame concepts, two designs were selected for an extended design and evaluation which narrowed the final selection down to one frame that was significantly lower in cost and slighty lighter than the other frame. An implementation plan for this lowest cost frame is projected for future development and includes prospects for reducing its weight with proposed unproven, innovative fabrication techniques.

  9. Framing the Manager

    DEFF Research Database (Denmark)

    Holmgreen, Lise-Lotte

    2013-01-01

    ). In this process, framing (Evans & Green 2006; Fillmore 1982; Kövecses 2006; Lakoff 1987, 1996) plays a salient role in conceptualising the profile and qualities of the preferred candidate, drawing on established cultural models of what constitutes the perfect leader. Thus, in a Danish setting we may talk of two...... predominant conceptual models or frames for leadership, the ‘goal-oriented motivator’ model and the ‘empathic communicator’ model, which frame the position and the candidate, from the discursive and metaphorical construction of the ad to the actual hiring of the new employee. While there may be little new...... in this realisation, the fact that one of the two models, the ‘goal-oriented motivator’ model, seems to be monopolising the genre raises a number of issues that need to be addressed: How is this model realised conceptually and linguistically? Why does this model continue to be the Danish business world’s preferred...

  10. What's in a Frame?

    DEFF Research Database (Denmark)

    Holmgreen, Lise-Lotte

    Maintaining a good image and reputation in the eyes of stakeholders is vital to the organisation. Thus, in its corporate communication and discourse the organisation will seek to present or frame itself as favourably as possible while observing regulations stipulating accuracy and precision...... an organisation, and hence in shaping the image projected to the public. Framing is here understood as the selection of ‘some aspects of perceived reality … [making] them more salient in the communication text, in such a way as to promote a particular problem definition, causal interpretation, moral evaluation......, in 2009 the Bank was striving to uphold the image of a prudent, trustworthy – and blameless - actor in the financial sector, a strategy it eventually changed. Through the study of the frames adopted by the Danish print press and the Bank, I will argue for the constructions of the press putting...

  11. New Characterizations of Fusion Frames (Frames of Subspaces)

    Indian Academy of Sciences (India)

    Mohammad Sadegh Asgari

    2009-06-01

    In this article, we give new characterizations of fusion frames, on the properties of their synthesis operators, on the behavior of fusion frames under bounded operators with closed range, and on erasures of subspaces of fusion frames. Furthermore we show that every fusion frame is the image of an orthonormal fusion basis under a bounded surjective operator.

  12. Promoting the avoidance of high-calorie snacks: priming autonomy moderates message framing effects.

    Science.gov (United States)

    Pavey, Louisa; Churchill, Sue

    2014-01-01

    The beneficial effects of gain-framed vs. loss-framed messages promoting health protective behaviors have been found to be inconsistent, and consideration of potential moderating variables is essential if framed health promotion messages are to be effective. This research aimed to determine the influence of highlighting autonomy (choice and freedom) and heteronomy (coercion) on the avoidance of high-calorie snacks following reading gain-framed or loss-framed health messages. In Study 1 (N = 152) participants completed an autonomy, neutral, or heteronomy priming task, and read a gain-framed or loss-framed health message. In Study 2 (N = 242) participants read a gain-framed or loss-framed health message with embedded autonomy or heteronomy primes. In both studies, snacking intentions and behavior were recorded after seven days. In both studies, when autonomy was highlighted, the gain-framed message (compared to the loss-framed message) resulted in stronger intentions to avoid high-calorie snacks, and lower self-reported snack consumption after seven days. Study 2 demonstrated this effect occurred only for participants to whom the information was most relevant (BMI>25). The results suggest that messages promoting healthy dietary behavior may be more persuasive if the autonomy-supportive vs. coercive nature of the health information is matched to the message frame. Further research is needed to examine potential mediating processes. PMID:25078965

  13. Framings for graph hypersurfaces

    CERN Document Server

    Brown, Francis

    2013-01-01

    We present a method for computing the framing on the cohomology of graph hypersurfaces defined by the Feynman differential form. This answers a question of Bloch, Esnault and Kreimer in the affirmative for an infinite class of graphs for which the framings are Tate motives. Applying this method to the modular graphs of Brown and Schnetz, we find that the Feynman differential form is not of Tate type in general. This finally disproves a folklore conjecture stating that the periods of Feynman integrals of primitive graphs in phi^4 theory factorise through a category of mixed Tate motives.

  14. Framing financial culture

    DEFF Research Database (Denmark)

    Just, Sine Nørholm; Mouton, Nicolaas T.O.

    2014-01-01

    between competing frames leads to the conclusion that this political “blame game” is related to struggles over how to define the scandal, how to conceptualize its causes, and policy recommendations. Banks may have lost the battle of “Liborgate,” but the war over the meaning of financial culture is far...... from over. Originality/value – The paper is theoretically and methodologically original in its combination of the theories of framing and stasis, and it provides analytical insights into how sense is made of financial culture in the wake of the financial crisis....

  15. Frames and extension problems I

    DEFF Research Database (Denmark)

    Christensen, Ole

    2014-01-01

    In this article we present a short survey of frame theory in Hilbert spaces. We discuss Gabor frames and wavelet frames and set the stage for a discussion of various extension principles; this will be presented in the article Frames and extension problems II (joint with H.O. Kim and R.Y. Kim)....

  16. Framing Evolution Discussion Intellectually

    Science.gov (United States)

    Oliveira, Alandeom W.; Cook, Kristin; Buck, Gayle A.

    2011-01-01

    This study examines how a first-year biology teacher facilitates a series of whole-class discussions about evolution during the implementation of a problem-based unit. A communicative theoretical perspective is adopted wherein evolution discussions are viewed as social events that the teacher can frame intellectually (i.e., present or organize as…

  17. Institutional Justification in Frames

    DEFF Research Database (Denmark)

    Baden, Christian; Schultz, Friederike

    Crises – such as the BP oil spill in the Gulf of Mexico (2010) – are moments in which conventional interpretations break down. This paper analyzes the dynamics of the re-construction and stabilization of meaning in the public debate and assesses how BP’s strategic framing affected the emerging co...

  18. The Cage; Framing Dad

    DEFF Research Database (Denmark)

    Kau, Edvin

    2012-01-01

    Unfolding his story very gradually and arousing the viewer’s curiosity, Sitaru invites the audience to investigate the parents’ and the boy’s mutual positions in their small flat, as well as the various layers of their conversations, through such means as framing, editing style, and the use...

  19. Frames for supersymmetry

    CERN Document Server

    Doran, C F; Gates, S J, Jr; Hübsch, T; Iga, K M; Landweber, G D

    2008-01-01

    We explain how the redefinitions of supermultiplet component fields, comprising what we call "frame shifts", can be used in conjuction with the graphical technology of multiplet Adkinras to render manifest the reducibility of off-shell representations of supersymmetry. This technology speaks to possibility of organizing multiplet constraints in a way which complements and extends the possibilities afforded by superspace methods.

  20. Framing difficulties in quantum mechanics

    CERN Document Server

    Modir, Bahar; Sayre, Eleanor C

    2016-01-01

    Students' difficulties in quantum mechanics may be the result of unproductive framing and not fundamental inability to solve the problems or misconceptions about physics content. We observed groups of students solving quantum mechanics problems in an upper-division physics course. Using the lens of the epistemological framing, we investigated four frames in our observational data: algorithmic math, conceptual math, algorithmic physics, and conceptual physics. We then used our framework to seek an underlying structure to the long lists of published difficulties that span many topics in quantum mechanics. We mapped descriptions of published difficulties into errors in epistemological framing and resource use. We analyzed descriptions of students' problem solving to find their frames, and compared students' framing to framing (and frame shifting) required by problem statements. We found three categories of error: mismatches between students' framing and problem statement framing; inappropriate or absent transiti...

  1. Equiangular Frames and Signature Sets

    OpenAIRE

    Singh, Preeti

    2009-01-01

    We will present a relation between real equiangular frames and certain special sets in groups which we call signature sets and show that many equiangular frames arise in this manner. Then we will define quasi-signature sets and will examine equiangular frames associated to these subsets of groups. We will extend these results to complex equiangular frames where the inner product between any pair of vectors is a common multiple of a cube root of unity and exhibit equiangular frames that arise ...

  2. Tight p-fusion frames

    OpenAIRE

    Bachoc, Christine; Ehler, Martin

    2012-01-01

    Fusion frames enable signal decompositions into weighted linear subspace components. For positive integers p, we introduce p-fusion frames, a sharpening of the notion of fusion frames. Tight p-fusion frames are closely related to the classical notions of designs and cubature formulas in Grassmann spaces and are analyzed with methods from harmonic analysis in the Grassmannians. We define the p-fusion frame potential, derive bounds for its value, and discuss the connections to tight p-fusion fr...

  3. Some relationship between G-frames and frames

    Directory of Open Access Journals (Sweden)

    Mehdi Rashidi-Kouchi

    2015-06-01

    Full Text Available In this paper we proved that every g-Riesz basis for Hilbert space $H$ with respect to $K$ by adding a condition is a Riesz basis for Hilbert $B(K$-module $B(H,K$. This is an extension of [A. Askarizadeh,M. A. Dehghan, {em G-frames as special frames}, Turk. J. Math., 35, (2011 1-11]. Also, we derived similar results for g-orthonormal and orthogonal bases. Some relationships between dual frame, dual g-frame and exact frame and exact g-frame are presented too.

  4. Framing Light Rail Projects

    DEFF Research Database (Denmark)

    Olesen, Mette

    2014-01-01

    . It identifies the planning rationales behind the systems and the policies that have been supportive of this light rail vision. Finally, the article identifies the practical challenges and potentials that have been connected to the different local frames of light rail mobility which can be used in future......In Europe, there has been a strong political will to implement light rail. This article contributes to the knowledge concerning policies around light rail by analysing how local actors frame light rail projects and which rationalities and arguments are present in this decision-making process....... The article draws on the socio-technical approach to mobilities studies in order to reassemble the decision-making process in three European cases: Bergen, Angers, and Bern. This article provides insights into the political, discursive and material production of light rail mobilities in a European context...

  5. Framing (implicitly) matters

    DEFF Research Database (Denmark)

    Anderson, Joel; Antalikova, Radka

    2014-01-01

    Denmark is currently experiencing the highest immigration rate in its modern history. Population surveys indicate that negative public attitudes toward immigrants actually stem from attitudes toward their (perceived) Islamic affiliation. We used a framing paradigm to investigate the explicit and ......, and implicit and explicit prejudice. Both the religious affiliation of the perceiver and the perceived religious affiliation of the target are key factors in social perception....

  6. Optical loop framing

    International Nuclear Information System (INIS)

    The ATA provides an electron beam pulse of 70-ns duration at a 1-Hz rate. Our present optical diagnostics technique involve the imaging of the visible light generated by the beam incident onto the plant of a thin sheet of material. It has already been demonstrated that the light generated has a sufficiently fast temporal reponse in performing beam diagnostics. Notwithstanding possible beam emittance degradation due to scattering in the thin sheet, the observation of beam spatial profiles with relatively high efficiencies has provided data complementary to that obtained from beam wall current monitors and from various x-ray probes and other electrical probes. The optical image sensor consists of a gated, intensified television system. The gate pulse of the image intensifier can be appropriately delayed to give frames that are time-positioned from the head to the tail of the beam with a minimum gate time of 5-ns. The spatial correlation of the time frames from pulse to pulse is very good for a stable electron beam; however, when instabilities do occur, it is difficult to properly assess the spatial composition of the head and the tail of the beam on a pulse-to-pulse basis. Multiple gating within a pulse duration becomes desirable but cannot be performed because the recycle time (20-ms) of the TV system is much longer than the beam pulse. For this reason we have developed an optical-loop framing technique that will allow the recording of two frames within one pulse duration with our present gated/intensified TV system

  7. Density of Gabor Frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Heil, C.; Deng, B.

    1997-01-01

    A Gabor system is a set of time-frequency shifts$S(g,\\Lambda) = \\{e^{2\\pi i b x} g(x-a)\\}_{(a,b) \\in \\Lambda}$of a function $g \\in L^2({\\bold R}^d)$.We prove that if a finite union of Gabor systems$\\bigcup_{k=1}^r S(g_k,\\Lambda_k)$, with arbitrary sequences $\\Lambda_k$,forms a frame for $L^2({\\bo...

  8. Robotically-adjustable microstereotactic frames for image-guided neurosurgery

    Science.gov (United States)

    Kratchman, Louis B.; Fitzpatrick, J. Michael

    2013-03-01

    Stereotactic frames are a standard tool for neurosurgical targeting, but are uncomfortable for patients and obstruct the surgical field. Microstereotactic frames are more comfortable for patients, provide better access to the surgical site, and have grown in popularity as an alternative to traditional stereotactic devices. However, clinically available microstereotactic frames require either lengthy manufacturing delays or expensive image guidance systems. We introduce a robotically-adjusted, disposable microstereotactic frame for deep brain stimulation surgery that eliminates the drawbacks of existing microstereotactic frames. Our frame can be automatically adjusted in the operating room using a preoperative plan in less than five minutes. A validation study on phantoms shows that our approach provides a target positioning error of 0.14 mm, which exceeds the required accuracy for deep brain stimulation surgery.

  9. Constitutionalizing secularism, alternative secularisms or liberal-democratic constitutionalism?A critical reading of some Turkish, ECtHR and Indian Supreme Court cases on ‘secularism’

    Directory of Open Access Journals (Sweden)

    Veit Bader

    2010-11-01

    Full Text Available In recent debates on the constitutional status of 'secularism' we can discern three positions. The first tries to overcome the absence of 'secularism' in most liberal-democratic constitutions by developing a more robust theory of constitutional secularism. The second develops theories of 'alternative secularisms'. The third, defended in this article, argues that we should drop secularism as a 'cacophonous' concept from our constitutional and legal language and replace it by liberal-democratic constitutionalism. I develop an analytical taxonomy of twelve different meanings of 'secularism' based on a comparative study of Turkish and Indian Supreme Court cases on secularism, and demonstrate that they are incompatible with each other and with the hard core of liberal-democratic constitutions. Next, I criticize the respective rulings in the Turkish and Indian context. Particularly in 'militant democracies', the appeal to a principle of 'secularism' turns out to be inimical to the liberal and to the democratic 'constitutional essentials'. I end with some normative recommendations on the role of constitutional review and judicial activism.

  10. Drugstore Reading Glasses

    Science.gov (United States)

    Erlichson, Herman

    2006-03-01

    The occasion for this paper was my reading of a paper in the February 2005 issue of TPT. As one gets older the near point of the eye begins to recede.2 This is called presbyopia.3 An alternative to purchasing glasses from an optometrist is to purchase an inexpensive pair of reading glasses in a pharmacy. The pharmacy has these glasses ordered by diopters corresponding to the strength of the lens needed for a particular presbyopic eye. The glasses are, of course, not available for myopic eyes.

  11. Writing through Visual Acts of Reading: Incorporating Visual Aesthetics in Integrated Writing and Reading Tasks

    Science.gov (United States)

    Choo, Suzanne S.

    2010-01-01

    The English curriculum tends to be framed in relation to two unconscious boundaries based on the dichotomies between writing and reading as well as print and image. This paper re-envisions the curriculum as comprising a hybrid space where students are involved in composing texts that integrate writing and reading practices while also considering…

  12. A review of the status of alternative approaches to animal testing and the development of integrated testing strategies for assessing the toxicity of chemicals under REACH--a summary of a DEFRA-funded project conducted by Liverpool John Moores University and FRAME.

    Science.gov (United States)

    Grindon, Christina; Combes, Robert; Cronin, Mark T D; Roberts, David W; Garrod, John

    2006-03-01

    Liverpool John Moores University and FRAME were recently awarded a DEFRA tender to conduct a review of the status of alternative approaches to animal testing, and to recommend further research with regard to the forthcoming European Union REACH (Registration, Evaluation and Authorisation of Chemicals) system for the safety testing and risk assessment of chemicals. The outcome of the project is summarised, including the prospects for in vitro and in silico testing, areas where reduction and refinement could be applied, and how decision-tree integrated testing strategies could be used to reduce the number of animals needed to fulfil the testing requirements of the REACH system. This paper is a prelude to a series of individual papers on detailed suggestions for applying non-animal methods to each of the major toxicity endpoints in REACH. PMID:16555968

  13. Continuous Shearlet Tight Frames

    KAUST Repository

    Grohs, Philipp

    2010-10-22

    Based on the shearlet transform we present a general construction of continuous tight frames for L2(ℝ2) from any sufficiently smooth function with anisotropic moments. This includes for example compactly supported systems, piecewise polynomial systems, or both. From our earlier results in Grohs (Technical report, KAUST, 2009) it follows that these systems enjoy the same desirable approximation properties for directional data as the previous bandlimited and very specific constructions due to Kutyniok and Labate (Trans. Am. Math. Soc. 361:2719-2754, 2009). We also show that the representation formulas we derive are in a sense optimal for the shearlet transform. © 2010 Springer Science+Business Media, LLC.

  14. Synchronization and Inertial Frames

    CERN Document Server

    Viazminsky, C P

    1999-01-01

    In classical mechanics, a procedure for simultaneous synchronization in all inertial frames is consistent with the Galilean transformation. However, if one attempts to achieve such a synchronization utilizing light signals, he will be facing in the first place the break down of simultaneity, and secondly, a self-contradictory transformation that has the Lorentz transformation, or its confinement to the velocity of light, as the only possible ways that resolve the contradiction. The current work constitutes a smooth transition from traditional to relativistic vision of mechanics, and therefore is quite appealing from pedagogical point of view.

  15. VIOLENT FRAMES IN ACTION

    Energy Technology Data Exchange (ETDEWEB)

    Sanfilippo, Antonio P.; McGrath, Liam R.; Whitney, Paul D.

    2011-11-17

    We present a computational approach to radical rhetoric that leverages the co-expression of rhetoric and action features in discourse to identify violent intent. The approach combines text mining and machine learning techniques with insights from Frame Analysis and theories that explain the emergence of violence in terms of moral disengagement, the violation of sacred values and social isolation in order to build computational models that identify messages from terrorist sources and estimate their proximity to an attack. We discuss a specific application of this approach to a body of documents from and about radical and terrorist groups in the Middle East and present the results achieved.

  16. FishFrame

    DEFF Research Database (Denmark)

    Degel, Henrik; Jansen, Teunis

    2006-01-01

    for fixed reoccurring tasks like assessment working groups, data are often late and the quality can be unsatisfactory. The current situation of this “semi-manual distributed datawarehouse” can be improved technically. Methods for quality control, raising and calculation can be discussed and unified....... Development and test of software modules can be done once and reused by all. The biggest challenge in this is not technical – it is in organisation, coordination and trust. This challenge has been addressed by FishFrame - a web-based datawarehouse application. The “bottom-up” approach with maximum involvement...

  17. New avenues for framing research

    NARCIS (Netherlands)

    C.H. de Vreese

    2012-01-01

    In this article, the author reviews the studies in this special issue of the American Behavioral Scientist. It is a strong collection of articles reporting findings from an integrated project that looks at frame building, frames, and effects of frames. The project is part of an exciting large-scale

  18. Fiber Bundles and Parseval Frames

    OpenAIRE

    Agrawal, Devanshu; Knisley, Jeff

    2015-01-01

    Continuous frames over a Hilbert space have a rich and sophisticated structure that can be represented in the form of a fiber bundle. The fiber bundle structure reveals the central importance of Parseval frames and the extent to which Parseval frames generalize the notion of an orthonormal basis.

  19. Reading Letters

    DEFF Research Database (Denmark)

    Beier, Sofie

    2012-01-01

    In our everyday life we constantly encounter a diversity of reading matters, including display types on traffic signage, printed text in novels, newspaper headlines, or our own writing on a computer screen. All these conditions place different demands on the typefaces applied. The book discusses...... these aspects by drawing on typography history, designers’ ideas, and available scientific data concerning the reading process....

  20. Teaching Reading.

    Science.gov (United States)

    Ricketts, Mary

    1980-01-01

    Described are five approaches to teaching reading: Language Experience, Modified Alphabet, Linguistic, Programmed, and Basal. It is suggested that a good teacher, well trained, certified in his or her profession, an active participant in professional organizations, can teach reading successfully using almost any approach. (KC)

  1. Reading Evaluation

    Science.gov (United States)

    Fagan, W. T.

    1978-01-01

    The Canadian Institute for Research in Behavioral and Social Sciences of Calgary was awarded a contract by the Provincial Government of Alberta to assess student skills and knowledge in reading and written composition. Here evaluation is defined and the use of standardized and criterion referenced tests for evaluating reading performance are…

  2. Promoting preschool reading

    OpenAIRE

    Istenič, Vesna

    2013-01-01

    The thesis titled Promoting preschool reading consists of a theoretiral and an empirical part. In the theoretical part I wrote about reading, the importance of reading, types of reading, about reading motivation, promoting reading motivation, internal and external motivation, influence of reading motivation on the child's reading activity, reading and familial literacy, the role of adults in promotion reading literacy, reading to a child and promoting reading in pre-school years, where I ...

  3. Effects of news frames on perceived risk, emotions, and learning.

    Directory of Open Access Journals (Sweden)

    Christine Otieno

    Full Text Available The media play a key role in forming opinions by influencing people´s understanding and perception of a topic. People gather information about topics of interest from the internet and print media, which employ various news frames to attract attention. One example of a common news frame is the human-interest frame, which emotionalizes and dramatizes information and often accentuates individual affectedness. Our study investigated effects of human-interest frames compared to a neutral-text condition with respect to perceived risk, emotions, and knowledge acquisition, and tested whether these effects can be "generalized" to common variants of the human-interest frame. Ninety-one participants read either one variant of the human-interest frame or a neutrally formulated version of a newspaper article describing the effects of invasive species in general and the Asian ladybug (an invasive species in particular. The framing was achieved by varying the opening and concluding paragraphs (about invasive species, as well as the headline. The core text (about the Asian ladybug was the same across all conditions. All outcome variables on framing effects referred to this common core text. We found that all versions of the human-interest frame increased perceived risk and the strength of negative emotions compared to the neutral text. Furthermore, participants in the human-interest frame condition displayed better (quantitative learning outcomes but also biased knowledge, highlighting a potential dilemma: Human-interest frames may increase learning, but they also lead to a rather unbalanced view of the given topic on a "deeper level".

  4. Semiclassical framed BPS states

    CERN Document Server

    Moore, Gregory W; Bleeken, Dieter Van den

    2015-01-01

    We provide a semiclassical description of framed BPS states in four-dimensional N = 2 super Yang-Mills theories probed by 't Hooft defects, in terms of a supersymmetric quantum mechanics on the moduli space of singular monopoles. Framed BPS states, like their ordinary counterparts in the theory without defects, are associated with the L^2 kernel of certain Dirac operators on moduli space, or equivalently with the L^2 cohomology of related Dolbeault operators. The Dirac/Dolbeault operators depend on two Cartan-valued Higgs vevs. We conjecture a map between these vevs and the Seiberg-Witten special coordinates, consistent with a one-loop analysis and checked in examples. The map incorporates all perturbative and nonperturbative corrections that are relevant for the semiclassical construction of BPS states, over a suitably defined weak coupling regime of the Coulomb branch. We use this map to translate wall crossing formulae and the no exotics theorem to statements about the Dirac/Dolbeault operators. The no exo...

  5. Frame architecture for video servers

    Science.gov (United States)

    Venkatramani, Chitra; Kienzle, Martin G.

    1999-11-01

    Video is inherently frame-oriented and most applications such as commercial video processing require to manipulate video in terms of frames. However, typical video servers treat videos as byte streams and perform random access based on approximate byte offsets to be supplied by the client. They do not provide frame or timecode oriented API which is essential for many applications. This paper describes a frame-oriented architecture for video servers. It also describes the implementation in the context of IBM's VideoCharger server. The later part of the paper describes an application that uses the frame architecture and provides fast and slow-motion scanning capabilities to the server.

  6. Equiangular Frames and Signature Sets

    CERN Document Server

    Singh, Preeti

    2009-01-01

    We will present a relation between real equiangular frames and certain special sets in groups which we call signature sets and show that many equiangular frames arise in this manner. Then we will define quasi-signature sets and will examine equiangular frames associated to these subsets of groups. We will extend these results to complex equiangular frames where the inner product between any pair of vectors is a common multiple of a cube root of unity and exhibit equiangular frames that arise from groups in this manner.

  7. Effects of gain-loss frames on satisfaction with self-other outcome-differences

    NARCIS (Netherlands)

    C.K.W. de Dreu; C. McCusker

    1994-01-01

    Examined satisfaction with outcome-differences as a function of the individual's gain or loss frame, other's gain or loss frame, the cooperative or noncooperative nature of the relationship, and their interactions. After reading a scenario, 110 undergraduates rated on a satisfaction-dissatisfaction

  8. A Comparison of Two Reading Fluency Methods: Repeated Readings to a Fluency Criterion and Interval Sprinting

    Science.gov (United States)

    Kostewicz, Douglas E.; Kubina, Richard M., Jr.

    2010-01-01

    Teachers have used the method of repeated readings to build oral reading fluency in students with and without special needs. A new fluency building intervention called interval sprinting uses shorter timing intervals (i.e., sprints) across a passage. This study used an alternating treatment design to compare repeated readings and interval…

  9. The Duals of Fusion Frames for Experimental Data Transmission Coding of High Energy Physics

    OpenAIRE

    Jinsong Leng; Qixun Guo; Tingzhu Huang

    2013-01-01

    The experimental data transmission is an important part of high energy physics experiment. In this paper, we connect fusion frames with the experimental data transmission implement of high energy physics. And we research the utilization of fusion frames for data transmission coding which can enhance the transmission efficiency, robust against erasures, and so forth. For this application, we first characterize a class of alternate fusion frames which are duals of a given fusion frame in a Hilb...

  10. Language use depending on news frame and immigrant origin.

    Science.gov (United States)

    Fernández, Itziar; Igartua, Juan-José; Moral, Félix; Palacios, Elena; Acosta, Tania; Muñoz, Dolores

    2013-01-01

    The purpose of this study was to analyze the effect of the media on individuals' specific language use in relation to a news story on immigration: the influence of the news frame and group cue. Abstraction, complexity of language use, and negative affective language were evaluated. The 523 participants were randomly distributed to each of the four experimental conditions: news frame (crime versus economic contribution) by group cue (geographical origin of the immigrants involved: Moroccans versus Latin Americans). Through content analysis of the ideas and reflections that arose after the participants read the different news stories, using the Linguistic Category Model (LCM; Semin & Fiedler, 1991) to measure abstract language and the Linguistic Inquiry and Word Count (LIWC; Pennebaker, Booth, & Francis, 2007) to analyze complex language and negative affective language, it emerged that abstract language and negative affective language were more frequent in the participants assigned to the news frame on crime. Complex language was more commonly used when the news frame referred to the economic contribution of immigrants. Regression analyses showed the mediating role of attitude to immigration in the effects of news frame on negative affective language. The bootstrap method was used to assess the magnitude of the indirect effect. A significant mediator effect was also found through structural equation modeling. Analyses of covariance showed one interaction between news frame and group cue: Among those who read the news story in a frame linking immigration to crime and Moroccan origin, abstract language was more characteristic. The results are discussed from the theoretical perspective of framing. PMID:23113573

  11. Seismic Performance Comparison of a High-Content SDA Frame and Standard RC Frame

    Directory of Open Access Journals (Sweden)

    John W. van de Lindt

    2011-01-01

    Full Text Available This study presents the method and results of an experiment to study the seismic behavior of a concrete portal frame with fifty percent of its cement content replaced with a spray dryer ash (SDA. Based on multiple-shake-table tests, the high content SDA frame was found to perform as well as the standard concrete frame for two earthquakes exceeding design-level intensity earthquakes. Hence, from a purely seismic/structural standpoint, it may be possible to replace approximately fifty percent of cement in a concrete mix with SDA for the construction of structural members in high seismic zones. This would help significantly redirect spray dryer ash away from landfills, thus, providing a sustainable greener alternative to concrete that uses only Portland cement, or only a small percentage of SDA or fly ash.

  12. Density of Gabor Frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Heil, Christopher; Deng, Baiqiao

    1999-01-01

    A Gabor system is a set of time-frequency shifts S(g, Lambda) = {e(2 pi ibx) g(x - a)}((a,b)is an element of Lambda) of a function g is an element of L-2(R-d). We prove that if a finite union of Gabor systems boolean (ORk=1S)-S-r(g(k), Lambda(k)) forms a frame for L-2(R-d) then the lower and upper...... Beurling densities of Lambda = boolean ORk=1r Lambda(k) satisfy D- (Lambda) greater than or equal to 1 and D+(Lambda) boolean ORk=1r {g(k)(x - a)}(a is an element of Gamma k) of pure...

  13. Voz sobre frame relay

    OpenAIRE

    D´Elia, Gabriel Anibal

    2000-01-01

    Esta tesis trata el tema de VOFR, desde la digitalización de la voz hasta su transmisión a través de dicha red, así también como la comparación con otros medios de transporte como VOIP. Dada las características del protocolo frame relay y su disponibilidad se eligió como el medio más apropiado para la transmisión de voz y datos en forma integrada sobre una misma red. El trabajo comienza con una breve explicación de la voz, su digitalización y forma actual de transmisión a través de una red di...

  14. Framing a Bank

    DEFF Research Database (Denmark)

    Holmgreen, Lise-Lotte

    2012-01-01

    Maintaining a good image and reputation in the eyes of stakeholders is vital to the organisation. Thus, in its corporate communication and discourse the organisation will seek to present itself as favourably as possible while observing regulations stipulating accuracy and precision in the informa......Maintaining a good image and reputation in the eyes of stakeholders is vital to the organisation. Thus, in its corporate communication and discourse the organisation will seek to present itself as favourably as possible while observing regulations stipulating accuracy and precision...... Danish bank, Danske Bank, during the 2008 financial crisis and hence in shaping its image projected to the public. Through the study of a number of semantic frames adopted by the Danish print press and those adopted by the Bank, this article will argue for the constructions of the press putting...

  15. Scarcity frames value.

    Science.gov (United States)

    Shah, Anuj K; Shafir, Eldar; Mullainathan, Sendhil

    2015-04-01

    Economic models of decision making assume that people have a stable way of thinking about value. In contrast, psychology has shown that people's preferences are often malleable and influenced by normatively irrelevant contextual features. Whereas economics derives its predictions from the assumption that people navigate a world of scarce resources, recent psychological work has shown that people often do not attend to scarcity. In this article, we show that when scarcity does influence cognition, it renders people less susceptible to classic context effects. Under conditions of scarcity, people focus on pressing needs and recognize the trade-offs that must be made against those needs. Those trade-offs frame perception more consistently than irrelevant contextual cues, which exert less influence. The results suggest that scarcity can align certain behaviors more closely with traditional economic predictions. PMID:25676256

  16. Semiclassical framed BPS states

    Science.gov (United States)

    Moore, Gregory W.; Royston, Andrew B.; Van den Bleeken, Dieter

    2016-07-01

    We provide a semiclassical description of framed BPS states in four-dimensional {N}=2 super Yang-Mills theories probed by 't Hooft defects, in terms of a supersymmetric quantum mechanics on the moduli space of singular monopoles. Framed BPS states, like their ordinary counterparts in the theory without defects, are associated with the L 2 kernel of certain Dirac operators on moduli space, or equivalently with the L 2 cohomology of related Dolbeault operators. The Dirac/Dolbeault operators depend on two Cartan-valued Higgs vevs. We conjecture a map between these vevs and the Seiberg-Witten special coordinates, consistent with a one-loop analysis and checked in examples. The map incorporates all perturbative and nonperturbative corrections that are relevant for the semiclassical construction of BPS states, over a suitably defined weak coupling regime of the Coulomb branch. We use this map to translate wall crossing formulae and the no-exotics theorem to statements about the Dirac/Dolbeault operators. The no-exotics theorem, concerning the absence of nontrivial SU(2) R representations in the BPS spectrum, implies that the kernel of the Dirac operator is chiral, and further translates into a statement that all L 2 cohomology of the Dolbeault operator is concentrated in the middle degree. Wall crossing formulae lead to detailed predictions for where the Dirac operators fail to be Fredholm and how their kernels jump. We explore these predictions in nontrivial examples. This paper explains the background and arguments behind the results announced in the short note [1].

  17. Agenda-setting and Framing: details of the same theory?

    Directory of Open Access Journals (Sweden)

    Graça Penha Nascimento Rossetto

    2012-07-01

    Full Text Available In Agenda-setting and Framing literature there is a variety of research dedicated to examine the effects of communicative messages on the audience and its characteristics. In this context, there are theoretical approaches that alternate, coexist and complement each other. This article aims to make a historical review of them, analyzing and differentiating the attribute agenda setting and Framing, often seen as synonymous.

  18. Riesz frames and approximation of the frame coefficients

    DEFF Research Database (Denmark)

    Casazza, P.; Christensen, Ole

    1998-01-01

    A frame is a fmaily {f i } i=1 ∞ of elements in a Hilbert space with the property that every element in can be written as a (infinite) linear combination of the frame elements. Frame theory describes how one can choose the corresponding coefficients, which are called frame coefficients. From...... avoided the inversion problem. In the same spirit we approximate the solution to a moment problem. It turns out, that the class of “well-behaving frames” are identical for the two problems we consider....

  19. Riesz Frames and Approximation of the Frame Coefficients

    DEFF Research Database (Denmark)

    Christensen, Ole

    1996-01-01

    A frame is a familyof elements in a Hilbert space with the propertythat every element in the Hilbert space can be written as a (infinite)linear combination of the frame elements. Frame theory describes howone can choose the corresponding coefficients, which are calledframe coefficients. From...... the mathematical point of view this isgratifying, but for applications it is a problem that the calculationrequires inversion of an operator on the Hilbert space.The projection method is introduced in order to avoid this problem.The basic idea is to consider finite subfamiliesof the frame and the orthogonal...

  20. Does E-Reading Enhance Reading Fluency?

    Science.gov (United States)

    Akbar, Rahima S.; Taqi, Hanan A.; Dashti, Abdulmohsin A.; Sadeq, Taiba M.

    2015-01-01

    Extensive reading is reading as much as possible, for one's own pleasure, at a difficulty level at which one can read smoothly and quickly. In the domain of reading, this paper investigates the effect of extensive reading from e-books, through utilizing a number of downloadable reading application programs on the students' e-devices, as opposed to…

  1. How Reading Volume Affects Both Reading Fluency and Reading Achievement

    Science.gov (United States)

    Allington, Richard L.

    2014-01-01

    Long overlooked, reading volume is actually central to the development of reading proficiencies, especially in the development of fluent reading proficiency. Generally no one in schools monitors the actual volume of reading that children engage in. We know that the commonly used commercial core reading programs provide only material that requires…

  2. Seismic behavior and design of wall-EDD-frame systems

    Directory of Open Access Journals (Sweden)

    Oren eLavan

    2015-06-01

    Full Text Available Walls and frames have different deflection lines and, depending on the seismic mass they support, may often poses different natural periods. In many cases, wall-frame structures present an advantageous behavior. In these structures the walls and the frames are rigidly connected. Nevertheless, if the walls and the frames were not rigidly connected, an opportunity for an efficient passive control strategy would arise: Connecting the two systems by energy dissipation devices (EDDs to result in wall-EDD-frame systems. This, depending on the parameters of the system, is expected to lead to an efficient energy dissipation mechanism.This paper studies the seismic behavior of wall-EDD-frame systems in the context of retrofitting existing frame structures. The controlling non-dimensional parameters of such systems are first identified. This is followed by a rigorous and extensive parametric study that reveals the pros and cons of the new system versus wall-frame systems. The effect of the controlling parameters on the behavior of the new system are analyzed and discussed. Finally, tools are given for initial design of such retrofitting schemes. These enable both choosing the most appropriate retrofitting alternative and selecting initial values for its parameters.

  3. FRAMES and Other IEM Technologies

    Science.gov (United States)

    A presentation package is developed that describes the FRAMES software technology system. The philosophy of FRAMES is discussed; its components and editors are reviewed; its relationship to integrated environmental modeling technologies; such as D4EM and SuperMUSE, are described;...

  4. On framed quantum principal bundles

    CERN Document Server

    Durdevic, M

    1995-01-01

    A noncommutative-geometric formalism of framed principal bundles is sketched, in a special case of quantum bundles (over quantum spaces) possessing classical structure groups. Quantum counterparts of torsion operators and Levi-Civita type connections are analyzed. A construction of a natural differential calculus on framed bundles is described. Illustrative examples are presented.

  5. Pairs of dual periodic frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Goh, Say Song

    2012-01-01

    is needed. The purpose of the present paper is to provide constructions of dual pairs of frames in the setting of the Hilbert space of periodic functions L2(0,2π). The frames constructed are given explicitly as trigonometric polynomials, which allows for an efficient calculation of the coefficients...

  6. Calculating body frame size (image)

    Science.gov (United States)

    ... boned category. Determining frame size: To determine the body frame size, measure the wrist with a tape measure and use the following chart to determine whether the person is small, medium, or large boned. Women: Height under 5'2" Small = wrist size less ...

  7. What's in a frame?

    DEFF Research Database (Denmark)

    Holmgreen, Lise-Lotte

    with the attitudes of readers and customers. The data for the analysis consist of newspaper articles from the Danish broadsheet press in the period of October 2008 to November 2009 as well as communication material from the Bank’s website. References Charteris-Black, Jonathan. 2004. Corpus Approaches to Critical...... Metaphor Analysis. Houndmills: Palgrave. Coombs, Timothy W. 1995. Choosing the right words: The development of guidelines for the selection of the “appropriate” crisis-response strategies. Management Communication Quarterly 8 (4): 447-476. Fillmore, Charles. 1975. An alternative to checklist theories......In the wake of the 2008 financial crisis, many large international banks received heavy criticism for their business conduct, which involved investments in dubious loans and business projects. For Denmark’s largest bank, Danske Bank, the situation was no different; it went from being considered...

  8. Does Extensive Reading Promote Reading Speed?

    Science.gov (United States)

    He, Mu

    2014-01-01

    Research has shown a wide range of learning benefits accruing from extensive reading. Not only is there improvement in reading, but also in a wide range of language uses and areas of language knowledge. However, few research studies have examined reading speed. The existing literature on reading speed focused on students' reading speed…

  9. Reading Clubs, Workshops, Reading in the Park

    OpenAIRE

    Banaurs, Daniela

    2013-01-01

    Reading clubs are networks made up of book lovers who read the same book at the same time and then share their ideas and feelings inspired by that reading. This short paper discusses the benefits of reading clubs and reading workshops.

  10. Oral Reading Fluency in Second Language Reading

    Science.gov (United States)

    Jeon, Eun Hee

    2012-01-01

    This study investigated the role of oral reading fluency in second language reading. Two hundred and fifty-five high school students in South Korea were assessed on three oral reading fluency (ORF) variables and six other reading predictors. The relationship between ORF and other reading predictors was examined through an exploratory factor…

  11. Reading Hygiene

    Institute of Scientific and Technical Information of China (English)

    耿一铭

    2006-01-01

    Here are some good points for good eye health that everyone can follow: 1.Rest your eyes before they get tired. Just close your eyes from time to time or look offat some distant object. 2.Do not read in either too dark a light or

  12. Reading Rembrandt

    NARCIS (Netherlands)

    Bal, Mieke

    2006-01-01

    Reading Rembrandt: Beyond the Word-Image Opposition explores the potential for an interdisciplinary methodology between visual art and literature. In a series of close analyses of works by "Rembrandt" - works as we see them today, through all the ways of seeing and commenting that precede - and text

  13. WHAT IS READING?

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Reading is enjoying,entertaining and ent ightening Reading is listening,speaking and writingReading is talking and discussing,with yourself with the author and with the others Reading is exploring,investigating and guessing. Reading is traveling backward and forward,historically and geographically. Reading is thinking in your own language,and/or in the other language. Reading is encoding and decoding. Reading is civilizing,rationalizing and intellectualizing. Reading is assimilating,associating,accumula...

  14. Framed School--Frame Factors, Frames and the Dynamics of Social Interaction in School

    Science.gov (United States)

    Persson, Anders

    2015-01-01

    This paper aims to show how the Goffman frame perspective can be used in an analysis of school and education and how it can be combined, in such analysis, with the frame factor perspective. The latter emphasizes factors that are determined outside the teaching process, while the former stresses how actors organize their experiences and define…

  15. 在毕赤酵母中利用口蹄疫病毒(FMDV)2A实现dTomato和串联MagaininⅡ基因的共表达%Coexpression of dTomato and Muti-copy Magainin Ⅱ Linked by the Foot-and mouth disease virus (FMDV) 2A Region in a Single Open Reading Frame in Pichia pastoris

    Institute of Scientific and Technical Information of China (English)

    卢艳敏; 崔海信; 王承民; 何宏轩

    2012-01-01

    抗菌肽(antibacterial peptides)是生物体内经诱导产生的一种具有生物活性的多肽,是天然免疫的重要组成部分.为了提高抗菌肽的表达量以及很方便地检测抗菌肽的表达情况,本研究利用口蹄疫病毒(Foot-and-mouth disease virus,FMDV) 2A将荧光蛋白dTomato基因和3个串联的MagaininⅡ基因融合到一个开放阅读框中(open reading frame,ORE),融合的基因被置于pPIC9K载体醇氧化酶基因(AOX1)启动子的下游,构建分泌型重组酵母表达载体pPIC9K-dTomato -2A-3M,将线性化的重组酵母表达载体通过电击法转入毕赤酵母(Pichia pastoris )GS115中,经G418筛选和PCR鉴定得到阳性转化子,然后将其转至摇瓶,在30℃、0.5%甲醇的条件下进行诱导表达,连续诱导3d.SDS-PAGE电泳图谱显示,在31 kD(dTomato)和9.5kD(3M)处有蛋白条带出现,在荧光显微镜下观察酵母表达上清发出红色荧光,对大肠杆菌(Escherichia coli)和金黄色葡萄球菌(Staphylococcus aureus)抑菌试验结果表明,重组抗菌肽串联的MagaininⅡ具有明显的抑菌效果.结果表明,由2A连接的融合基因(荧光蛋白dTomato和串联的MagaininⅡ)在毕赤酵母中成功的进行了表达,FMDV 2A在其C端剪切多聚蛋白,得到dTomato和串联的MagaininⅡ两个独立而有活性的蛋白,为小分子抗菌肽的表达提供一个高效的检测方法.%Antimicrobial peptideis is a kind of bioactive polypeptides induced by pathogens in organisms, which is an important component of innate immunity. In order to improve the expression of antimicrobial peptide and easily detect the expression of antimicrobial peptide. The red fluorescent protein dTomato and muti-copy Magainin II genes were fused into a single open reading frame (ORF) with a copy of the Foot-and mouth disease virus (FMDV) 2A region placed between the two genes. The fused genes were placed under the control of the alcohol oxidase (A 0X1) gene promoter in pPIC9K vector to construct the

  16. The Practicality of Poetry: Using Sonnets to Improve Reading Ability

    Science.gov (United States)

    Vallicelli, Arthur E.

    2012-01-01

    This dissertation examines the way in which sonnets improved reading comprehension through a case study. The study was conceptually framed around the ideas of the New Critics, who employed two particular fallacies to ensure the most accurate reading of literature. The purpose of the study was to see the potential benefits that could come from…

  17. Framing Obesity: How News Frames Shape Attributions and Behavioral Responses.

    Science.gov (United States)

    Sun, Ye; Krakow, Melinda; John, Kevin K; Liu, Miao; Weaver, Jeremy

    2016-01-01

    Based on a public health model of obesity, this study set out to examine whether a news article reporting the obesity issue in a societal versus individual frame would increase perceptions of societal responsibilities for the obesity problem and motivate responsibility-taking behaviors. Responsibility-taking behaviors were examined at 3 levels: personal, interpersonal, and societal. Data from a Web-based experiment revealed significant framing effects on behaviors via causal and treatment responsibility attributions. The societal frame increased societal causal and treatment attribution, which led to greater likelihoods of interpersonal and social responsibility-taking behaviors as well as personal behaviors. Our findings suggest that news framing can be an effective venue for raising awareness of obesity as a societal issue and mobilizing collective efforts. PMID:26375052

  18. Reference frame for Product Configuration

    DEFF Research Database (Denmark)

    Ladeby, Klaes Rohde; Oddsson, Gudmundur Valur

    2011-01-01

    This paper presents a reference frame for configuration. The reference frame is established by review of existing literature, and consequently it is a theoretical frame of reference. The review of literature shows a deterioration of the understanding of configuration. Most recent literature reports...... on configuration systems in the shape of anecdotal reporting on the development of information systems that perhaps support the configuration task – perhaps not. Consequently, the definition of configuration has become ambiguous as different research groups defines configuration differently. This paper propose...... a reference frame for configuration that permits 1) a more precise understanding of a configuration system, 2) a understanding of how the configuration system relate to other systems, and 3) a definition of the basic concepts in configuration. The total configuration system, together with the definition...

  19. Alternative security

    International Nuclear Information System (INIS)

    This book contains the following chapters: The Military and Alternative Security: New Missions for Stable Conventional Security; Technology and Alternative Security: A Cherished Myth Expires; Law and Alternative Security: Toward a Just World Peace; Politics and Alternative Security: Toward a More Democratic, Therefore More Peaceful, World; Economics and Alternative Security: Toward a Peacekeeping International Economy; Psychology and Alternative Security: Needs, Perceptions, and Misperceptions; Religion and Alternative Security: A Prophetic Vision; and Toward Post-Nuclear Global Security: An Overview

  20. Approximation of the Inverse -Frame Operator

    Indian Academy of Sciences (India)

    M R Abdollahpour; A Najati

    2011-05-01

    In this paper, we introduce the concept of (strong) projection method for -frames which works for all conditional -Riesz frames. We also derive a method for approximation of the inverse -frame operator which is efficient for all -frames. We show how the inverse of -frame operator can be approximated as close as we like using finite-dimensional linear algebra.

  1. Automatic Reading

    Institute of Scientific and Technical Information of China (English)

    胡迪

    2007-01-01

    <正>Reading is the key to school success and,like any skill,it takes practice.A child learns to walk by practising until he no longer has to think about how to put one foot in front of the other.The great athlete practises until he can play quickly,accurately and without thinking.Ed- ucators call it automaticity.

  2. Framing the patent troll debate.

    Science.gov (United States)

    Risch, Michael

    2014-02-01

    The patent troll debate has reached a fevered pitch in the USA. This editorial seeks to frame the debate by pointing out the lack of clarity in defining patent trolls and their allegedly harmful actions. It then frames the debate by asking currently unanswered questions: Where do troll patents come from? What are the effects of troll assertions? Will policy changes improve the system? PMID:24354803

  3. Differential expression of X chromosome open reading frame 6 in hypospadiac male rats induced by Di-n-butyl phthalate%X染色体开放读码框架6在邻苯二甲酸二丁酯致雄性大鼠尿道下裂发生中的表达

    Institute of Scientific and Technical Information of China (English)

    魏俊峰; 周耀军; 王勇; 张力峰; 张炜

    2012-01-01

    Objective To verify the differential expression of X chromosome open reading frame 6 (CXorf6) in the testes of hypospadiac rats induced by maternal exposure to Di-n-butyl phthalate (DBP) and normal control rats in order to further explore the mechanism of hypospadias.Methods Twenty pregnant SD rats were randomly divided into two groups which were given DBP and soybean oil gavage at the dose of 800 mg/(kg·day) and 2 ml/day separately during the 14-18th day of pregnancy.Hypospadias incidence was calculated at GD19.The expression of CXorf6 was analyzed by Western blotting and immunohistochemistry.Results The incidence of hypospadias was 40.7%.There were statistically significant difference in the expression of CXorf6 between experiment group (0.323 ± 0.014) and control group (0.706 ±0.016,P <0.05).CXorf6 was mainly located in sertoli and leydig cells,and staining intensity in control group was stronger than in experimental group.Conclusion DBP could affect the occurrence of hypospadias by regnlating the expression of CXorf6 in fetal male rats.%目的 观察X染色体开放读码框架6(CXorf6)在邻苯二甲酸二丁酯(DBP)致大鼠尿道下裂发生中的作用.方法 于妊娠14~18 d(GD14~18)实验和对照组各10只孕鼠分别给予DBP 800 mg/(kg·d)和豆油2 ml/d灌胃,GD19剖宫产统计尿道下裂发生率,免疫印迹法和免疫组织化学法分析两组子鼠睾丸中CXorf6的表达.结果 尿道下裂仅实验组发生,发生率为40.7%;CXorf6在尿道下裂组的相对表达量为0.323±0.014(n=10),对照组为0.706±0.016(n=10),差异有统计学意义(P<0.05);CXorf6主要定位于睾丸间质和支持细胞,尿道下裂组CXorf6着色细胞数量减少,染色强度弱于对照组.结论 DBP通过干预CXorf6的表达以影响睾丸的发育及雄激素的产生而导致尿道下裂的发生.

  4. Approach/Avoidance Motivation, Message Framing, and Health Behavior: Understanding the Congruency Effect.

    Science.gov (United States)

    Sherman, David K; Mann, Traci; Updegraff, John A

    2006-06-01

    Health messages framed to be congruent with individuals' approach/avoidance motivations have been found to be more effective in promoting health behaviors than health messages incongruent with approach/avoidance motivations. This study examines the processes underlying this congruency effect. Participants (undergraduate students, N = 67) completed a measure of approach/avoidance orientation (the BIS/BAS scales) and read either a gain- or loss-framed message promoting dental flossing. Results demonstrated a congruency effect: Participants who read a congruently framed message had greater flossing efficacy, intended to floss more, and used more dental flosses than did the participants who read an incongruent message. Moreover, intention to perform the behavior predicted the congruency effect and self-efficacy mediated participants' intentions to perform the health behavior. Discussion centers on the role of personality factors and situational factors in models of behavior change. PMID:19079797

  5. Alternative energies; Energies alternatives

    Energy Technology Data Exchange (ETDEWEB)

    Bonal, J.; Rossetti, P

    2007-07-01

    The earth took millions years to made the petroleum, the gas the coal and the uranium. Only a few centuries will be needed to exhaust these fossil fuels and some years to reach expensive prices. Will the wold continue on this way of energy compulsive consumption? The renewable energies and some citizen attitudes are sufficient to break this spiral. This book proposes to discuss these alternative energies. It shows that this attitude must be supported by the government. It takes stock on the more recent information concerning the renewable energies. it develops three main points: the electricity storage, the housing and the transports. (A.L.B.)

  6. Some properties of C-fusion frames

    OpenAIRE

    Faroughi , Mohammad Hasan

    2010-01-01

    In [10], we generalized the concept of fusion frames, namely, c-fusion frames, which is a continuous version of the fusion frames. In this article we give some important properties about the generalization, namely erasures of subspaces, the bound of c-erasure reconstruction error for Parseval c-fusion frames, perturbation of c-fusion frames and the frame operator for fusion pair.

  7. Pleasure Reading and Reading Rate Gains

    Science.gov (United States)

    Beglar, David; Hunt, Alan

    2014-01-01

    This study investigated the effects of (a) the amount of pleasure reading completed, (b) the type of texts read (i.e., simplified or unsimplified books), and (c) the level of simplified texts read by 14 Japanese university students who made the largest reading rate gains over one academic year. The findings indicated that the participants who made…

  8. Reading Together: A Successful Reading Fluency Intervention

    Science.gov (United States)

    Young, Chase; Mohr, Kathleen A. J.; Rasinski, Timothy

    2015-01-01

    The article describes a reading fluency intervention called Reading Together that combines the method of repeated readings (Samuels, 1979) and the Neurological Impress Method (Heckelman, 1969). Sixteen volunteers from various backgrounds were recruited and trained to deliver the Reading Together intervention to struggling readers in third through…

  9. Co-reading: investigating collaborative group reading.

    OpenAIRE

    Pearson, J.; Owen, T.; Thimbleby, H. W.; Buchanan, G.

    2012-01-01

    Collaborative reading, or co-reading as we call it, is ubiquitous—it occurs, for instance, in classrooms, book-clubs, and in less coordinated ways through mass media. While individual digital reading has been the subject of much investigation, research into co-reading is scarce. We report a two-phase field study of group reading to identify an initial set of user requirements. A co-reading interface is then designed that facilitates the coordination of group reading by providing temporary ‘Po...

  10. STRESS ANALYSIS OF BICYCLE FRAME

    Directory of Open Access Journals (Sweden)

    Mr.M.V.Pazare

    2014-06-01

    Full Text Available This paper deals with the stress analysis of bicycle frame by using Finite Element Method. The analysis is carried out in Ansys, The F.E.A. results are compared with theoretical results. In theoretical analysis the frame is treated as truss like structure and the stresses in various members of frame like top tube, down tube, seat tube, chain stay and seat stay are determined, considering various condition like, static start up, steady state paddling, vertical impact, horizontal impact, rear wheel braking. Also Finite Element Analysis is done considering the above conditions. From the analysis it is found that there is a good agreement between analytical and F.E.A. results. Result of all the cases reveals that maximum stress is found in top tube of the bicycle frame as compared to other frame members and is equal to 24.84 MPa which is less than yield strength in tension (i.e.Syt = 290 MPa for the material (aluminum T 6061 selected.

  11. Reading with Maggie: The Effect of the Presence/Absence of a Classroom Pet Dog in a Reading Intervention Package

    Science.gov (United States)

    Bassette, Laura A.

    2011-01-01

    The purpose of this study was to examine if the presence/absence of a classroom pet dog impacted reading skills in four 5th grade middle school students with emotional/ behavioral disabilities. An alternating treatment design was used to assess the fluency and comprehension measures in students during reading a reading intervention package…

  12. Alternative additives; Alternative additiver

    Energy Technology Data Exchange (ETDEWEB)

    2007-08-15

    In this project a number of industrial and agricultural waste products have been characterised and evaluated in terms of alkali-getter performance. The intended use is for biomass-fired power stations aiming at reducing corrosion or slagging related problems. The following products have been obtained, characterised and evaluated: 1) Brewery draff 2) Danish de-gassed manure 3) Paper sludge 4) Moulding sand 5) Spent bleaching earth 6) Anorthosite 7) Sand 8) Clay-sludge. Most of the above alternative additive candidates are deemed unsuitable due to insufficient chemical effect and/or expensive requirements for pre-treatment (such as drying and transportation). 3 products were selected for full-scale testing: de-gassed manure, spent bleaching earth and clay slugde. The full scale tests were undertaken at the biomass-fired power stations in Koege, Slagelse and Ensted. Spent bleaching earth (SBE) and clay sludge were the only tested additive candidates that had a proven ability to react with KCl, to thereby reduce Cl-concentrations in deposits, and reduce the deposit flux to superheater tubes. Their performance was shown to nearly as good as commercial additives. De-gassed manure, however, did not evaluate positively due to inhibiting effects of Ca in the manure. Furthermore, de-gassed manure has a high concentration of heavy metals, which imposes a financial burden with regard to proper disposal of the ash by-products. Clay-sludge is a wet clay slurring, and drying and transportation of this product entails substantial costs. Spent bleaching does not require much pre-treatment and is therefore the most promising alternative additive. On the other hand, bleaching earth contains residual plant oil which means that a range of legislation relating to waste combustion comes into play. Not least a waste combustion fee of 330 DKK/tonne. For all alternative (and commercial) additives disposal costs of the increase ash by-products represents a significant cost. This is

  13. Approach/Avoidance Motivation, Message Framing, and Health Behavior: Understanding the Congruency Effect*

    OpenAIRE

    Sherman, David K.; Mann, Traci; Updegraff, John A.

    2006-01-01

    Health messages framed to be congruent with individuals' approach/avoidance motivations have been found to be more effective in promoting health behaviors than health messages incongruent with approach/avoidance motivations. This study examines the processes underlying this congruency effect. Participants (undergraduate students, N = 67) completed a measure of approach/avoidance orientation (the BIS/BAS scales) and read either a gain- or loss-framed message promoting dental flossing. Results ...

  14. Frames of exponentials:lower frame bounds for finite subfamilies, and approximation of the inverse frame operator

    DEFF Research Database (Denmark)

    Christensen, Ole; Lindner, Alexander M

    2001-01-01

    We give lower frame bounds for finite subfamilies of a frame of exponentials {e(i lambdak(.))}k is an element ofZ in L-2(-pi,pi). We also present a method for approximation of the inverse frame operator corresponding to {e(i lambdak(.))}k is an element ofZ, where knowledge of the frame bounds for...

  15. Beyond Cognition: Reading Motivation and Reading Comprehension

    Science.gov (United States)

    Wigfield, Allan; Gladstone, Jessica; Turci, Lara

    2016-01-01

    The authors review research on children’s reading motivation and its relation to their reading comprehension. They begin by discussing work on the development of school motivation in general and reading motivation in particular, reviewing work showing that many children’s reading motivation declines over the school years. Girls tend to have more positive motivation for reading than do boys, and there are ethnic differences in children’s reading motivation. Over the last 15 years researchers have identified in both laboratory and classroom-based research instructional practices that positively impact students’ reading motivation and ultimately their reading comprehension. There is a strong need for researchers to build on this work and develop and study in different age groups of children effective classroom-based reading motivation instructional programs for a variety of narrative and informational materials.

  16. Sparsity and spectral properties of dual frames

    DEFF Research Database (Denmark)

    Krahmer, Felix; Kutyniok, Gitta; Lemvig, Jakob

    2013-01-01

    We study sparsity and spectral properties of dual frames of a given finite frame. We show that any finite frame has a dual with no more than $n^2$ non-vanishing entries, where $n$ denotes the ambient dimension, and that for most frames no sparser dual is possible. Moreover, we derive an expressio...

  17. Rearing a reading habit

    OpenAIRE

    M.S. Sridhar

    2009-01-01

    Discusses the importance and ways of inculcating reading habit in children at the right age, describes the five reading phases in children along with interest and the material to satiate the need, explains how four deterministic factors affect the reading habit of children, enlists motivations that are behind the reading process with tips to improve reading habit of children.

  18. What Is Reading?

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Reading is enjoying, entertaining and enlightening.Reading is listening, speaking and writing.Reading is talking and discussing,with yourself, with the author and with the others.Reading is exploring, investigating and guessing.Reading is travelling backward and forward, historically and geographically.

  19. Media framing and social movements

    NARCIS (Netherlands)

    R. Vliegenthart

    2013-01-01

    In their study of media content, mass communication scholars commonly rely on Entman's (1993: 52) definition of framing: "[selecting] some aspects of a perceived reality and make them more salient in a communicating text, in such a way as to promote a particular problem definition, causal interpreta

  20. Meta framing and polyphonic structures

    DEFF Research Database (Denmark)

    Pedersen, Karsten

    2015-01-01

    in various ways in BT’s 2012 coverage of a doping case involving Riis. In this article I investigate the way in which BT meta frames itself and its own actions in order to show and underline the seriousness with which BT treats sports journalism. The study is part of a recurring Danish project harvesting...

  1. Frame Rate and Human Vision

    Science.gov (United States)

    Watson, Andrew B.

    2012-01-01

    To enhance the quality of the theatre experience, the film industry is interested in achieving higher frame rates for capture and display. In this talk I will describe the basic spatio-temporal sensitivities of human vision, and how they respond to the time sequence of static images that is fundamental to cinematic presentation.

  2. Stability of (p, Y)-Operator Frames

    Institute of Scientific and Technical Information of China (English)

    Zhi Hua GUO; Huai Xin CAO; Jun Cheng YIN

    2011-01-01

    In this paper we study the stability of (p, Y)-operator frames. We firstly discuss the relations between p-Bessel sequences (or p-frames) and (p, Y)-operator Bessel sequences (or (p, Y)-operator frames). Through defining a new union, we prove that adding some elements to a given (p, Y)-operator frame, the resulted sequence will be still a (p, Y)-operator frame. We obtain a necessary and sufficient condition for a sequence of compound operators to be a (p, Y)operator frame. Lastly, we show that (p, Y)-operator frames for X are stable under some small perturbations.

  3. Alternative Genres of IS Research

    DEFF Research Database (Denmark)

    Avital, Michel; Mathiassen, Lars; Crowston, Kevin;

    2012-01-01

    perspectives, research methods, semantic framing, literary styles, and media of expression. Overall, the application of alternative genres is considered to be a generative act that provides an opportunity to take a fresh look and to gain deeper understanding of the subject matter. Nonetheless, paradoxically......The potential value of alternative genres in IS research is the core question that drives this panel discussion. The term “Alternative Genres” refers to unconventional forms of thinking, doing, and communicating scholarship and practice. It relates to innovation with respect to epistemological...... the prevailing genres have much inertia, in spite of the inherent boundary spanning nature of alternative genres. Building on their own recent empirical research, the panelists will debate the potential value of alternative genres as unconventional modality of IS scholarship and how alternative genres might...

  4. Toddler Reading Time

    Science.gov (United States)

    ... KidsHealth in the Classroom What Other Parents Are Reading Upsetting News Reports? What to Say Vaccines: Which ... 5 Things to Know About Zika & Pregnancy Toddler Reading Time KidsHealth > For Parents > Toddler Reading Time Print ...

  5. Developmental reading disorder

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/001406.htm Developmental reading disorder To use the sharing features on this page, please enable JavaScript. Developmental reading disorder is a reading disability that occurs when ...

  6. Cosmetology Reading Strategies. 1980 Vocational Reading Series.

    Science.gov (United States)

    Thornton, L. Jay; And Others

    Cosmetology Reading Strategies is one of five instructional guides in the Reading Strategies in Vocational Education Series. Developed to assist teachers working with students considered disadvantaged because of reading deficiency, the guide contains several strategies, suitable for adaptation, specifically related to cosmetology instruction. Each…

  7. Reading(s) in the Writing Classroom.

    Science.gov (United States)

    Foster, David

    1997-01-01

    Interrogates the reading/writing connection by evaluating how three essays by published writers affected the attitude and writing practices of university students in a course on the personal essay. Describes the course. Suggests what findings imply for current rationales about the reading/writing connection and for the use of anthology readings in…

  8. Promoting Reading Motivation by Reading Together

    Science.gov (United States)

    Monteiro, Vera

    2013-01-01

    In the present project we tested the hypothesis that tutorial situations with peers would benefit children's reading motivation. Participants were from elementary school--80 fourth-graders and 80 second-graders. We used a questionnaire to assess reading motivation. In the tutorial sessions we developed a Paired Reading Program. The children who…

  9. Ultra-fast framing camera tube

    Science.gov (United States)

    Kalibjian, Ralph

    1981-01-01

    An electronic framing camera tube features focal plane image dissection and synchronized restoration of the dissected electron line images to form two-dimensional framed images. Ultra-fast framing is performed by first streaking a two-dimensional electron image across a narrow slit, thereby dissecting the two-dimensional electron image into sequential electron line images. The dissected electron line images are then restored into a framed image by a restorer deflector operated synchronously with the dissector deflector. The number of framed images on the tube's viewing screen is equal to the number of dissecting slits in the tube. The distinguishing features of this ultra-fast framing camera tube are the focal plane dissecting slits, and the synchronously-operated restorer deflector which restores the dissected electron line images into a two-dimensional framed image. The framing camera tube can produce image frames having high spatial resolution of optical events in the sub-100 picosecond range.

  10. Variance based OFDM frame synchronization

    Directory of Open Access Journals (Sweden)

    Z. Fedra

    2012-04-01

    Full Text Available The paper deals with a new frame synchronization scheme for OFDM systems and calculates the complexity of this scheme. The scheme is based on the computing of the detection window variance. The variance is computed in two delayed times, so a modified Early-Late loop is used for the frame position detection. The proposed algorithm deals with different variants of OFDM parameters including guard interval, cyclic prefix, and has good properties regarding the choice of the algorithm's parameters since the parameters may be chosen within a wide range without having a high influence on system performance. The verification of the proposed algorithm functionality has been performed on a development environment using universal software radio peripheral (USRP hardware.

  11. Developing the Framed Standard Model

    CERN Document Server

    Baker, Michael J; Chan, H M; Tsou, S T

    2011-01-01

    The framed standard model (FSM) suggested earlier, which incorporates the Higgs field and 3 fermion generations as part of the framed gauge theory structure, is here developed further to show that it gives both quarks and leptons hierarchical masses and mixing matrices akin to what is experimentally observed. Among its many distinguishing features which lead to the above results are (i) the vacuum is degenerate under a global $su(3)$ symmetry which plays the role of fermion generations, (ii) the fermion mass matrix is "universal", rank-one and rotates (changes its orientation in generation space) with changing scale $\\mu$, (iii) the metric in generation space is scale-dependent too, and in general non-flat, (iv) the theta-angle term in the QCD action of topological origin gets transformed into the CP-violating phase of the CKM matrix for quarks, thus offering at the same time a solution to the strong CP problem.

  12. Perturbation of Wavelet and Gabor Frames

    Institute of Scientific and Technical Information of China (English)

    Ivana Carrizo; Sergio Favier

    2003-01-01

    In this work two aspects of theory of frames are presented: a side necessary condition on irregular wavelet frames is obtained, another perturbation of wavelet and Gabor frames is considered. Specifically,we present the results obtained on frame stability when one disturbs the mother of wavelet frame, or the parameter of dilatation, and in Gabor frames when the generating function or the parameter of translation are perturbed. In all cases we work without demanding compactness of the support, neither on the generating function, nor on its Fourier transform.

  13. Monolithic LTCC seal frame and lid

    Energy Technology Data Exchange (ETDEWEB)

    Krueger, Daniel S.; Peterson, Kenneth A.; Stockdale, Dave; Duncan, James Brent; Riggs, Bristen

    2016-06-21

    A method for forming a monolithic seal frame and lid for use with a substrate and electronic circuitry comprises the steps of forming a mandrel from a ceramic and glass based material, forming a seal frame and lid block from a ceramic and glass based material, creating a seal frame and lid by forming a compartment and a plurality of sidewalls in the seal frame and lid block, placing the seal frame and lid on the mandrel such that the mandrel fits within the compartment, and cofiring the seal frame and lid block.

  14. Preservation of memory-based automaticity in reading for older adults.

    Science.gov (United States)

    Rawson, Katherine A; Touron, Dayna R

    2015-12-01

    Concerning age-related effects on cognitive skill acquisition, the modal finding is that older adults do not benefit from practice to the same extent as younger adults in tasks that afford a shift from slower algorithmic processing to faster memory-based processing. In contrast, Rawson and Touron (2009) demonstrated a relatively rapid shift to memory-based processing in the context of a reading task. The current research extended beyond this initial study to provide more definitive evidence for relative preservation of memory-based automaticity in reading tasks for older adults. Younger and older adults read short stories containing unfamiliar noun phrases (e.g., skunk mud) followed by disambiguating information indicating the combination's meaning (either the normatively dominant meaning or an alternative subordinate meaning). Stories were repeated across practice blocks, and then the noun phrases were presented in novel sentence frames in a transfer task. Both age groups shifted from computation to retrieval after relatively few practice trials (as evidenced by convergence of reading times for dominant and subordinate items). Most important, both age groups showed strong evidence for memory-based processing of the noun phrases in the transfer task. In contrast, older adults showed minimal shifting to retrieval in an alphabet arithmetic task, indicating that the preservation of memory-based automaticity in reading was task-specific. Discussion focuses on important implications for theories of memory-based automaticity in general and for specific theoretical accounts of age effects on memory-based automaticity, as well as fruitful directions for future research. PMID:26302027

  15. Using Speed Reading and Extensive Reading Activities to Improve Students’ Reading Fluency

    OpenAIRE

    Sri Wardani

    2015-01-01

    Abstract: This study examines the implementation of Speed Reading and Extensive Reading activities to improve students’ reading fluency of students. Using a Classroom Action Research, Speed Reading and Extensive Reading activities was applied in 2 cycles with 2 x 45 minutes per week. Speed Reading and Extensive Reading activities were taught using three phase techniques: Pre-Reading, Whilst-Reading, and Post-Reading. Speed Reading was implemented through some techniques including scanning, sk...

  16. Differential reading recovery in patients with severe to moderate closed head injury.

    Science.gov (United States)

    Kaplan, C P

    1990-12-01

    A differential recovery was seen when alternate forms of a nationally standardized test of Reading Vocabulary, Literal Reading Comprehension and Inferential Reading Comprehension was administered serially to 10 consecutive closed head injury admissions to a university rehabilitation hospital. Inferential Reading Comprehension was the most impaired and had the fastest recovery rate. Subtle cognitive deficits in Inferential Reading Comprehension were detected when Reading Vocabulary was at or better than a twelfth grade level. Maximal recovery of all three reading functions occurred within 4 months after trauma, with most occurring in the first 3 months. The reading recovery pattern parallels the recovery of intelligence scores in the literature.

  17. Big Read, Big ROI

    Science.gov (United States)

    Dempsey, Beth

    2008-01-01

    In 2004, the National Endowment for the Arts (NEA) released a grim report on the state of literary reading in America. "Reading at Risk" (www.nea.gov/pub/ReadingAtRisk.pdf) detailed a dramatic decline in recreational reading across all segments of the American population--young and old, black, brown, and white. It also included the projected…

  18. Reading Assessment: Looking Ahead

    Science.gov (United States)

    Afflerbach, Peter

    2016-01-01

    In this article, I focus on three areas of reading assessment that I believe to be crucial for students' reading development: developing comprehensive formative assessments, assessing the wide array of factors that contribute to students' reading development, and fostering student independence by helping students learn to use reading assessment on…

  19. On Efficient Reading

    Institute of Scientific and Technical Information of China (English)

    陈伟平

    2003-01-01

    Time is limited for each reader,but many readers waste a lot oftime on unimportant things, and they read everything at the same speed and in the same way. As a result, they often fail to understand the word and the sentence; they don't know how one sentence relates to another, and how the whole text fixes together. They are not reading efficiently. It is high time that we held a discussion on efficient reading. The author states that efficient reading involves adequate comprehension with appropriate reading rate. Pointing out the factors that influence reading rate and comprehension, this article put forward some suggestions on efficient reading.

  20. Framing Biotechnology in Iranian TV Series

    OpenAIRE

    H. Khaniki; M. H. Panahi; M. A. Ghaneirad; Z. Zardar

    2014-01-01

    Media as public opinion formers have crucial role in supporting the growth and development of science and technology . They form media frames in various fields of science and Technology. This paper seeks to identify frames which Iranian television series depict biotechnology. The Biotechnology frames Identified through qualitative framing analysis. To achieve this goal, all TV series of Five main national channels for a five-year period (2008-2013) were considered and two TV series – “Balhaye...

  1. Deletion of Dystrophin In-Frame Exon 5 Leads to a Severe Phenotype: Guidance for Exon Skipping Strategies.

    Directory of Open Access Journals (Sweden)

    Zhi Yon Charles Toh

    Full Text Available Duchenne and Becker muscular dystrophy severity depends upon the nature and location of the DMD gene lesion and generally correlates with the dystrophin open reading frame. However, there are striking exceptions where an in-frame genomic deletion leads to severe pathology or protein-truncating mutations (nonsense or frame-shifting indels manifest as mild disease. Exceptions to the dystrophin reading frame rule are usually resolved after molecular diagnosis on muscle RNA. We report a moderate/severe Becker muscular dystrophy patient with an in-frame genomic deletion of DMD exon 5. This mutation has been reported by others as resulting in Duchenne or Intermediate muscular dystrophy, and the loss of this in-frame exon in one patient led to multiple splicing events, including omission of exon 6, that disrupts the open reading frame and is consistent with a severe phenotype. The patient described has a deletion of dystrophin exon 5 that does not compromise recognition of exon 6, and although the deletion does not disrupt the reading frame, his clinical presentation is more severe than would be expected for classical Becker muscular dystrophy. We suggest that the dystrophin isoform lacking the actin-binding sequence encoded by exon 5 is compromised, reflected by the phenotype resulting from induction of this dystrophin isoform in mouse muscle in vivo. Hence, exon skipping to address DMD-causing mutations within DMD exon 5 may not yield an isoform that confers marked clinical benefit. Additional studies will be required to determine whether multi-exon skipping strategies could yield more functional dystrophin isoforms, since some BMD patients with larger in-frame deletions in this region have been reported with mild phenotypes.

  2. Deletion of Dystrophin In-Frame Exon 5 Leads to a Severe Phenotype: Guidance for Exon Skipping Strategies.

    Science.gov (United States)

    Toh, Zhi Yon Charles; Thandar Aung-Htut, May; Pinniger, Gavin; Adams, Abbie M; Krishnaswarmy, Sudarsan; Wong, Brenda L; Fletcher, Sue; Wilton, Steve D

    2016-01-01

    Duchenne and Becker muscular dystrophy severity depends upon the nature and location of the DMD gene lesion and generally correlates with the dystrophin open reading frame. However, there are striking exceptions where an in-frame genomic deletion leads to severe pathology or protein-truncating mutations (nonsense or frame-shifting indels) manifest as mild disease. Exceptions to the dystrophin reading frame rule are usually resolved after molecular diagnosis on muscle RNA. We report a moderate/severe Becker muscular dystrophy patient with an in-frame genomic deletion of DMD exon 5. This mutation has been reported by others as resulting in Duchenne or Intermediate muscular dystrophy, and the loss of this in-frame exon in one patient led to multiple splicing events, including omission of exon 6, that disrupts the open reading frame and is consistent with a severe phenotype. The patient described has a deletion of dystrophin exon 5 that does not compromise recognition of exon 6, and although the deletion does not disrupt the reading frame, his clinical presentation is more severe than would be expected for classical Becker muscular dystrophy. We suggest that the dystrophin isoform lacking the actin-binding sequence encoded by exon 5 is compromised, reflected by the phenotype resulting from induction of this dystrophin isoform in mouse muscle in vivo. Hence, exon skipping to address DMD-causing mutations within DMD exon 5 may not yield an isoform that confers marked clinical benefit. Additional studies will be required to determine whether multi-exon skipping strategies could yield more functional dystrophin isoforms, since some BMD patients with larger in-frame deletions in this region have been reported with mild phenotypes. PMID:26745801

  3. Complementary and Alternative Therapies in ALS

    OpenAIRE

    Bedlack, Richard S.; Joyce, Nanette; Carter, Gregory T.; Pagononi, Sabrina; Karam, Chafic

    2015-01-01

    Given the severity of their illness and lack of effective disease modifying agents, it is not surprising that most patients with ALS consider trying complementary and alternative therapies. Some of the most commonly considered alternative therapies include special diets, nutritional supplements, cannabis, acupuncture, chelation and energy healing. This chapter reviews these in detail. We also describe 3 models by which physicians may frame discussions about alternative therapies: paternalism,...

  4. Quantum games in noninertial frame

    CERN Document Server

    Khan, Salman

    2011-01-01

    We study the influence of Unruh effect on quantum non-zero sum games. In particular, we investigate the quantum prisoners' dilemma under different conditions and show that the acceleration of the noninertial frames disturbs the symmetry of the game. It is shown that under some particular situations, the classical strategy C (cooperation) becomes the dominant strategy. Our investigation shows that any quantum strategy does no better for any player against the classical strategies. The miracle move of Eisert et al [5] is no more a superior move. We show that the dilemma like situation under every condition of the game is resolved.

  5. Reading, Literacy, and Education

    OpenAIRE

    Lehtonen, Mikko

    2013-01-01

    In his article "Reading, Literacy, and Education" Mikko Lehtonen outlines a contextual approach to literacy. He asks how the changing relations of culture and economy, transformation of nation states and national cultures and changing notions concerning affect and cognition, transform notions of literacy and reading. Relying on the results of a recent Finnish research project on new reading communities and new ways of reading, Lehtonen highlights substantial continuities in the reading habits...

  6. Mechanical Energy Change in Inertial Reference Frames

    Science.gov (United States)

    Ghanbari, Saeed

    2016-01-01

    The mechanical energy change of a system in an inertial frame of reference equals work done by the total nonconservative force in the same frame. This relation is covariant under the Galilean transformations from inertial frame S to S', where S' moves with constant velocity relative to S. In the presence of nonconservative forces, such as normal…

  7. Classifying tight Weyl-Heisenberg frames

    DEFF Research Database (Denmark)

    Cazsazza, P.; Janssen, A. J. E. M.; Christensen, Ole

    1999-01-01

    A Weyl-Heisenberg frame for L^2(R) is a frame consisting of translates and modulates of a fixed function. In this paper we give necessary and sufficient conditions for this family to form a tight WH-frame. This allows us to write down explicitly all functions g for which all translates...

  8. A Framed Temporal Logic Programming Language

    Institute of Scientific and Technical Information of China (English)

    Zhen-HuaDuan; MaciejKoutny

    2004-01-01

    We discuss the projection temporal logic (PTL), based on a primitive projection operator, prj. A framing technique is also presented, using which a synchronization operator, await, is defined within the underlying logic. A framed temporal logic programming language (FTLL) is presented. To illustrate how to use both the language and framing technique, some examples are given.

  9. PARAMETRIC RESONANSE IN STATICALLY INDETERMINATE FRAMES

    Directory of Open Access Journals (Sweden)

    Yu.V. Vorona

    2014-12-01

    Full Text Available The technique for development and reduction of discrete dynamics models of frames is presented. Construction of the models is carried out using finite element method, generalized coordinates and tools of modern computer software. Parametric resonance in a statically indeterminate frame caused by external excitations is investigated. Main instability domains of the frame are determined.

  10. Non-Syntactic Antecedents and Frame Semantics.

    Science.gov (United States)

    Gensler, Orin

    A polemic is made for frame semantics and the linguistic phenomenon of anaphoric reference without noun phrase (NP) antecedent is examined within this frame. Non-syntactic anaphora is that which does not point out into the real world but rather points back into the discourse in a frame which has been built up between the speaker and hearer in a…

  11. Oversampling of wavelet frames for real dilations

    DEFF Research Database (Denmark)

    Bownik, Marcin; Lemvig, Jakob

    2012-01-01

    We generalize the Second Oversampling Theorem for wavelet frames and dual wavelet frames from the setting of integer dilations to real dilations. We also study the relationship between dilation matrix oversampling of semi-orthogonal Parseval wavelet frames and the additional shift invariance gain...

  12. Framing and misperception in public good experiments

    DEFF Research Database (Denmark)

    Fosgaard, Toke Reinholt; Hansen, Lars Gårn; Wengström, Erik Roland

    2016-01-01

    Earlier studies have found that framing has substantial impact on the degree of cooperation observed in public good experiments. We show that the way the public good game is framed affects misperceptions about the incentives of the game. Moreover, we show that such framing-induced differences...

  13. Inertial reference frames and gravitational forces

    International Nuclear Information System (INIS)

    The connection between different definitions of inertial, i.e. fundamental, reference frames and the corresponding characterisation of gravitational fields by gravitational forces are considered from the point of view of their possible interpretation in university introductory courses. The introduction of a special class of reference frames, denoted 'mixed reference frames' is proposed and discussed. (author)

  14. HOW UNSCHOOLERS CAN HELP TO END TRADITIONAL READING INSTRUCTION

    Directory of Open Access Journals (Sweden)

    Karl F. WHEATLEY, Ph.D.

    2012-10-01

    Full Text Available Unschoolers can help end traditional, de-contextualized reading skills instruction, a change which might create other beneficial ripple effects. An unschooling parent and early childhood teacher educator, the author describes how his children learned to read without formal instruction. Next is a description of how prospective and practicing teachers react to this example, to examples of how children learned to read in alternative schools, and to reading research that clearly favors a more natural approach to learning to read. Five ways in which the unschooling model can influence others are described, and three specific suggestions for advocacy by unschoolers are outlined.

  15. To read or not to read

    OpenAIRE

    Mol, Suzanne Elizabeth

    2010-01-01

    There is a widely held belief that reading (story)books makes us smarter and helps promote success in life. Does scientific evidence support this notion? The three meta-analyses in this thesis comprise 146 studies between 1988 and 2010 (N=10,308 participants) that addressed the role of book reading in language and reading development from infancy to early adulthood. Chapter 2 shows that reading routines that are part of children’s and students’ leisure-time activities offer substantial advant...

  16. A Formal Description of Problem Frames

    Directory of Open Access Journals (Sweden)

    Souleymane KOUSSOUBE

    2014-03-01

    Full Text Available Michael Jackson defines a Problem Frame as a mean to describe and classify software development problems. The initial description of problem Frames is essentially graphical. A weakness of this proposal is the lack of formal specification allowing efficient reasoning tools. This paper deals with Problem Frames’ formal specification with Description Logics. We first propose a formal terminology of Problem Frames leading to the specification of a Problem Frames’ TBOX and a specific problem’s ABOX. The Description Logics inference tools can then be used to decompose multi frame problems or to fix a particular problem into a Problem Frame.

  17. What Oral Text Reading Fluency Can Reveal about Reading Comprehension

    Science.gov (United States)

    Veenendaal, Nathalie J.; Groen, Margriet A.; Verhoeven, Ludo

    2015-01-01

    Text reading fluency--the ability to read quickly, accurately and with a natural intonation--has been proposed as a predictor of reading comprehension. In the current study, we examined the role of oral text reading fluency, defined as text reading rate and text reading prosody, as a contributor to reading comprehension outcomes in addition to…

  18. Reading program-Remedial, integrated, and innovative.

    Science.gov (United States)

    Butler, S R

    1991-01-01

    An innovative integrated remedial reading program has been developed based on recent research findings. My longitudinal studies have revealed that poor reading compounds itself over the years. The majority of children with reading disabilities currently remain in regular classrooms with varying techniques being used depending upon individual school directives and current educational theory.Despite current remedial techniques, the poorer reader tends to remain so throughout the school years. Innovative techniques must be developed in the hope of altering this pattern.This paper presents one alternative strategy which can be used to upgrade reading skills and break the cycle of reading failure. The Reading Assistance Tutorial Pack (R.A.T. Pack) is a carefully sequenced series of activities that enables the learner to experience the motivating and reinforcing properties of success through all stages of phonetic and reading skills development.It is a systematic, multidisciplinary remedial reading program based on sound behavior, psycholinguistic and cognitive theories of learning-incorporating listening, speaking, seeing, writing, thinking, and comprehension skills. The R.A.T. Pack demands a high percentage of on-task behavior and trains phonological processing strategies. Functional language use is promoted through enjoyable activities involving sentence construction, cloze passages, puzzles, games, and other creative manipulations of the surface features of languages. The program has proven successful in schools, homes, and clinics. PMID:24233760

  19. Message framing in social networking sites.

    Science.gov (United States)

    Kao, Danny Tengti; Chuang, Shih-Chieh; Wang, Sui-Min; Zhang, Lei

    2013-10-01

    Online social networking sites represent significant new opportunities for Internet advertisers. However, results based on the real world cannot be generalized to all virtual worlds. In this research, the moderating effects of need for cognition (NFC) and knowledge were applied to examine the impact of message framing on attitudes toward social networking sites. A total of 216 undergraduates participated in the study. Results reveal that for social networking sites, while high-NFC individuals form more favorable attitudes toward negatively framed messages than positively framed messages, low-NFC individuals form more favorable attitudes toward positively framed messages than negatively framed messages. In addition, low-knowledge individuals demonstrate more favorable attitudes toward negatively framed messages than positively framed messages; however, the framing effect does not differentially affect the attitudes of high-knowledge individuals. Furthermore, the framing effect does not differentially affect the attitudes of high-NFC individuals with high knowledge. In contrast, low-NFC individuals with low knowledge hold more favorable attitudes toward positively framed messages than negatively framed messages. PMID:23786169

  20. Interpretation versus Reference Framing: Assimilation and Contrast Effects in the Organizational Domain.

    Science.gov (United States)

    Stapel; Koomen

    1998-11-01

    We examined conditions under which contextually activated information affects strategic decision-making and found that the subjective framing of organizational issues may be affected by variables other than semantic manipulation. Context information may be used as an interpretation frame (and lead to assimilation) or as a reference frame (and lead to contrast). Whether context information instigates assimilative interpretation or contrastive comparison processes may depend on the level of categorical context-target similarity. This is demonstrated in three experiments in which participants read an unambiguous business threat or opportunity scenario prior to judging an ambiguous, strategic issue. Findings are discussed in the light of previous judgment and decision-making studies of framing and context effects. Copyright 1998 Academic Press. PMID:9831519

  1. Nonlinear pushover analysis of infilled concrete frames

    Institute of Scientific and Technical Information of China (English)

    Chao Hsun Huang; Yungting Alex Tuan; Ruo Yun Hsu

    2006-01-01

    Six reinforced concrete frames with or without masonry infills were constructed and tested under horizontal cyclic loads. All six frames had identical details in which the transverse reinforcement in columns was provided by rectangular hoops that did not meet current ACI specifications for ductile frames. For comparison purposes, the columns in three of these frames were jacketed by carbon-fiber-reinforced-polymer (CFRP) sheets to avoid possible shear failure. A nonlinear pushover analysis, in which the force-deformation relationships of individual elements were developed based on ACI 318, FEMA 356,and Chen's model, was carried out for these frames and compared to test results. Both the failure mechanisms and impact of infills on the behaviors of these frames were examined in the study. Conclusions from the present analysis provide structural engineers with valuable information for evaluation and design of infilled concrete frame building structures.

  2. Cultural Factors in Reading

    Institute of Scientific and Technical Information of China (English)

    孔敏

    2005-01-01

    Reading is a basic ability in learning English and reading comprehension exercise is a common way to assess this ability.Since reading is a communicative activity between author and reader in written form,there are some different rules and regulations of this communication in different countries.Therefore,cultural factors,existing in reading,decide,help,and influence the percentage of the right answers.This article attempts to analyze the effects of cultural differences in reading and the barriers in comprehension,and aims to improve students awareness of cultural differences in reading.

  3. Hunting down frame shifts: Ecological analysis of diverse functional gene sequences

    Directory of Open Access Journals (Sweden)

    Michal eStrejcek

    2015-11-01

    Full Text Available Functional gene ecological analyses using amplicon sequencing can be challenging as translated sequences are often burdened with shifted reading frames. The aim of this work was to evaluate several bioinformatics tools designed to correct errors which arise during sequencing in an effort to reduce the number of frame-shifts (FS. Genes encoding for alpha subunits of biphenyl (bphA and benzoate (benA dioxygenases were used as model sequences. FrameBot, a FS correction tool, was able to reduce the number of detected FS to zero. However, up to 43.1% of sequences were discarded by FrameBot as non-specific targets. Therefore, we proposed a de novo mode of FrameBot for FS correction, which works on a similar basis as common chimera identifying platforms and is not dependent on reference sequences. By nature of FrameBot de novo design, it is crucial to provide it with data as error free as possible. We tested the ability of several publicly available correction tools to decrease the number of errors in the data sets. The combination of Maximum Expected Error (MEE filtering and single linkage pre-clustering (SLP proved the most efficient read procession. Applying FrameBot de novo on the processed data enabled analysis of BphA sequences with minimal losses of potentially functional sequences not homologous to those previously known. This experiment also demonstrated the extensive diversity of dioxygenases in soil. A script which performs FrameBot de novo is presented in the supplementary material to the study and the tool was implemented into FunGene Pipeline available at http://fungene.cme.msu.edu/FunGenePipeline/ and https://github.com/rdpstaff/Framebot.

  4. Fingerprinting with Equiangular Tight Frames

    CERN Document Server

    Mixon, Dustin G; Kiyavash, Negar; Fickus, Matthew

    2011-01-01

    Digital fingerprinting is a framework for marking media files, such as images, music, or movies, with user-specific signatures to deter illegal distribution. Multiple users can collude to produce a forgery that can potentially overcome a fingerprinting system. This paper proposes an equiangular tight frame fingerprint design which is robust to such collusion attacks. We motivate this design by considering digital fingerprinting in terms of compressed sensing. The attack is modeled as linear averaging of multiple marked copies before adding a Gaussian noise vector. The content owner can then determine guilt by exploiting correlation between each user's fingerprint and the forged copy. The worst-case error probability of this detection scheme is analyzed and bounded. Simulation results demonstrate the average-case performance is similar to the performance of orthogonal and simplex fingerprint designs, while accommodating several times as many users.

  5. Discursive Framings of Human Rights

    DEFF Research Database (Denmark)

    within and between political societies, this book elicits the fluidity of their relationship, and with it the shifting relation between human rights and humanitarianism. Analysing the symbolic framings of testimonies, disaster stories, atrocity tales, political speeches, and philosophical arguments...... and social contexts. Historical as well as contemporary declarations of rights have stressed both the protective and political aspects of human rights. But in concrete situations and conflictual moments, the high moral legitimacy of human rights rhetoric has often clouded the actual character of specific...... interventions, and so made it difficult to differentiate between the objects of humanitarian intervention and the subjects of politics. Critically re-examining this opposition – between victims and agents of human rights – through a focus on the ways in which discourses of rights are formed and circulated...

  6. Alternative RNA Structure-Coupled Gene Regulations in Tumorigenesis

    Directory of Open Access Journals (Sweden)

    Feng-Chi Chen

    2014-12-01

    Full Text Available Alternative RNA structures (ARSs, or alternative transcript isoforms, are critical for regulating cellular phenotypes in humans. In addition to generating functionally diverse protein isoforms from a single gene, ARS can alter the sequence contents of 5'/3' untranslated regions (UTRs and intronic regions, thus also affecting the regulatory effects of these regions. ARS may introduce premature stop codon(s into a transcript, and render the transcript susceptible to nonsense-mediated decay, which in turn can influence the overall gene expression level. Meanwhile, ARS can regulate the presence/absence of upstream open reading frames and microRNA targeting sites in 5'UTRs and 3'UTRs, respectively, thus affecting translational efficiencies and protein expression levels. Furthermore, since ARS may alter exon-intron structures, it can influence the biogenesis of intronic microRNAs and indirectly affect the expression of the target genes of these microRNAs. The connections between ARS and multiple regulatory mechanisms underline the importance of ARS in determining cell fate. Accumulating evidence indicates that ARS-coupled regulations play important roles in tumorigenesis. Here I will review our current knowledge in this field, and discuss potential future directions.

  7. To read or not to read

    NARCIS (Netherlands)

    Mol, Suzanne Elizabeth

    2010-01-01

    There is a widely held belief that reading (story)books makes us smarter and helps promote success in life. Does scientific evidence support this notion? The three meta-analyses in this thesis comprise 146 studies between 1988 and 2010 (N=10,308 participants) that addressed the role of book reading

  8. Lights, Camera, Read! Arizona Reading Program Manual.

    Science.gov (United States)

    Arizona State Dept. of Library, Archives and Public Records, Phoenix.

    This document is the manual for the Arizona Reading Program (ARP) 2003 entitled "Lights, Camera, Read!" This theme spotlights books that were made into movies, and allows readers to appreciate favorite novels and stories that have progressed to the movie screen. The manual consists of eight sections. The Introduction includes welcome letters from…

  9. Relaxing Tight Frame Condition in Parallel Proximal Methods for Signal Restoration

    CERN Document Server

    Pustelnik, Nelly; Chaux, Caroline

    2011-01-01

    A fruitful approach for solving signal deconvolution problems consists of resorting to a frame-based convex variational formulation. In this context, parallel proximal algorithms and related alternating direction methods of multipliers have become popular optimization techniques to approximate iteratively the desired solution. Until now, in most of these methods, either Lipschitz differentiability properties or tight frame representations were assumed. In this paper, it is shown that it is possible to relax these assumptions by considering a class of non necessarily tight frame representations, thus offering the possibility of addressing a broader class of signal restoration problems. In particular, it is possible to use non necessarily maximally decimated filter banks with perfect reconstruction, which are common tools in digital signal processing. The proposed approach allows us to solve both frame analysis and frame synthesis problems for various noise distributions. In our simulations, it is applied to th...

  10. The Impact of Green Framing on Consumers’ Valuations of Energy-Saving Measures

    OpenAIRE

    Harmsen - van Hout, Marjolein; Ghosh, Gaurav; Madlener, Reinhard

    2013-01-01

    It is a matter of interest to policy-makers and marketers alike to quantify the impact of environmentally friendly messaging upon consumer decision-making behavior. We quantify the value of such messaging or 'green framing' through a choice experiment where subjects choose technical, home-related energy saving measures (ESMs) after valuing the attributes of a set of alternatives. Green framing is tested through a treatment where the one half of the subject pool is exposed to a scenario descri...

  11. Reading "Salt and Pepper": Social Practices, Unfinished Narratives, and Critical Interpretations

    Science.gov (United States)

    Anderson, Diane Downer

    2008-01-01

    In "Reading "Salt and Pepper"" Anderson examines a story written by three third grade girls and their insights about that story as they re-read it during its production and retrospectively, eight years later. Using a frame for understanding children's writing as social practice, the children's interviews, showing their multiple and sometimes…

  12. Alternative Treatments

    Science.gov (United States)

    ... Find your chapter: search by state Home > Alzheimer's Disease > Treatments > Alternative Treatments Overview What Is Dementia? What Is Alzheimer's? Younger/Early Onset Facts and Figures Know the 10 Signs Stages Inside the Brain: ...

  13. Can Reading Help?

    Science.gov (United States)

    Crowe, Chris

    2003-01-01

    Ponders the effect of September 11th on teenagers. Proposes that reading books can help teenagers sort out complicated issues. Recommends young adult novels that offer hope for overcoming tragedy. Lists 50 short story collections worth reading. (PM)

  14. What Are Reading Disorders?

    Science.gov (United States)

    ... Information Clinical Trials Resources and Publications What are reading disorders? Skip sharing on social media links Share ... for more information about these problems. Types of Reading Disorders Dyslexia is a brain-based type of ...

  15. Teaching Reading Skills

    Institute of Scientific and Technical Information of China (English)

    刘恒

    2014-01-01

    Reading skills are very important part in language teaching and learning. This paper is written after attending lectures given by an Australian teacher named Rod Ellis focusing on how to teach reading skills using authentic materials.

  16. On English Reading Skills

    Institute of Scientific and Technical Information of China (English)

    钱芬

    2008-01-01

    Reading is one of the four important skills in English learning.It is also a skill that the students need to possess to support independent and self-directed learning.With the development of society,science and technology develop at hish speed and the competition in the society become sharp.Reading is a way for students to be more knowledgeable and successful.So,it becomes more and more important to speed up their reading in order to acquire as much information as possible.Thus,fostering a good English reading habit is essential,and being able to adopt different reading skills for different reading materials and purposes will also help to read more effectively.The paper mainly concenls some basic English reading skills.

  17. Stress Matters: Effects of Anticipated Lexical Stress on Silent Reading

    Science.gov (United States)

    Breen, Mara; Clifton, Charles, Jr.

    2011-01-01

    This paper presents findings from two eye-tracking studies designed to investigate the role of metrical prosody in silent reading. In Experiment 1, participants read stress-alternating noun-verb or noun-adjective homographs (e.g. "PREsent", "preSENT") embedded in limericks, such that the lexical stress of the homograph, as determined by context,…

  18. Incorporating RTI in a Hybrid Model of Reading Disability

    Science.gov (United States)

    Spencer, Mercedes; Wagner, Richard K.; Schatschneider, Christopher; Quinn, Jamie M.; Lopez, Danielle; Petscher, Yaacov

    2014-01-01

    The present study seeks to evaluate a hybrid model of identification that incorporates response to instruction and intervention (RTI) as one of the key symptoms of reading disability. The 1-year stability of alternative operational definitions of reading disability was examined in a large-scale sample of students who were followed longitudinally…

  19. Complex pulsing schemes for high frame rate imaging

    DEFF Research Database (Denmark)

    Misaridis, Thanassis; Fink, Mathias; Jensen, Jørgen Arendt

    2002-01-01

    High frame rate ultrasound imaging can be achieved by simultaneous transmission of multiple focused beams along different directions. However, image quality degrades by the interference among beams. An alternative approach is to transmit spherical waves of a basic short pulse with frequency coding...... up to a pulse train. The acoustically generated high time-bandwidth (TB) product waveforms can be compressed by using a filter bank of matched filters one for every beam direction. Matched filtering compresses the pulse train to a single pulse at the scatterer position plus a number of spike axial......B. With the proposed imaging strategy of pulse train excitation, a whole image can be formed with only two emissions, making it possible to obtain high quality images at a frame rate of 20 to 25 times higher than that of conventional phased array imaging...

  20. Tactics for Reading Comprehension

    Institute of Scientific and Technical Information of China (English)

    孔祥航; 张艳荣

    2003-01-01

    In recent years, reading comprehension is taking up a larger and larger part in almost every international test or domestic examination. Knowing the basic knowledge and grasping the test - taking tactics are key factors of good reading comprehension. In this thesis, I will dwell on nine commonly used tactics for reading comprehension. This will help you to deal with the problems with reading comprehension efficiently.

  1. Pupil Decision Making in the Reading Curriculum.

    Science.gov (United States)

    Ediger, Marlow

    Being able to make decisions is important for all students. Students need to have opportunities to choose from among alternative situations. Reading, as one curriculum area, provides a plethora of opportunities to choose and to select. The philosopher John Locke believed the following facets of an individual's development were in the ensuing order…

  2. Dreaming of eReading Futures

    DEFF Research Database (Denmark)

    Tosca, Susana Pajares

    2015-01-01

    With point of departure on an empirical study about the new reading habits of tablet owners, this paper questions their embrace of immateriality and their willingness to abandon the material aspects of print books. Using a method of narrative enquiry, I propose an alternative future in which texts...

  3. From dual pairs of Gabor frames to dual pairs of wavelet frames and vice versa

    DEFF Research Database (Denmark)

    Christensen, Ole; Goh, Say Song

    2014-01-01

    We discuss an elementary procedure that allows us to construct dual pairs of wavelet frames based on certain dual pairs of Gabor frames and vice versa. The construction preserves tightness of the involved frames. Starting with Gabor frames generated by characteristic functions the construction...... leads to a class of tight wavelet frames that include the Shannon (orthonormal) wavelet, and applying the construction to Gabor frames generated by certain exponential B-splines yields wavelet frames generated by functions whose Fourier transforms are compactly supported splines with geometrically...... distributed knot sequences. On the other hand, the pendant of the Meyer wavelet turns out to be a tight Gabor frame generated by a C∞(R) function with compact support. As an application of our results we show that for each given pair of bandlimited dual wavelet frames it is possible to construct dual wavelet...

  4. Reading/Writing Connection.

    Science.gov (United States)

    Fernandez, Melanie

    In the past, students and teachers alike viewed reading and writing instruction as two separate entities. Reading and writing instruction was often characterized by linear and behaviorist theories and methods, with students rarely coming away from their schooling experience with confidence in and respect for their own writing. To both read and…

  5. Guided Reading and Motivation

    Science.gov (United States)

    Hauptman, Allyson L.

    2012-01-01

    The purpose of this study was to determine the relationship between Guided Reading and student motivation to read across fourth, fifth, and sixth grades. The study defined literacy motivation as: (a) task value; (b) self-perceived competence; (c) students' perceptions of the Guided Reading format. Factor analysis and repeated measures ANOVAs were…

  6. Reading: United States.

    Science.gov (United States)

    Weber, Rose-Marie

    1983-01-01

    An exploration of the increasingly important role of linguistics in literacy research and instruction reviews literature on reading comprehension, written language, orthography, metalinguistics, classroom language use, reading disabilities, native tongues, nonstandard dialects, bilingual education, adult literacy, and second-language reading. (86…

  7. Family Reading Night

    Science.gov (United States)

    Hutchins, Darcy; Greenfeld, Marsha; Epstein, Joyce

    2007-01-01

    This book offers clear and practical guidelines to help engage families in student success. It shows families how to conduct a successful Family Reading Night at their school. Family Night themes include Scary Stories, Books We Love, Reading Olympics, Dr. Seuss, and other themes. Family reading nights invite parents to come to school with their…

  8. Free Reading Is UTOPIA

    Science.gov (United States)

    LeCrone, Nancy

    2010-01-01

    In high school students get tied up in extracurricular activities and have little time for pleasure reading. It is true that with rigorous academic schedules they have little time for pleasure reading. Thus began a conversation with a sophomore English teacher at the author's high school. As they were discussing the plight of free reading he was…

  9. Evaluation of Reading Progress.

    Science.gov (United States)

    Ediger, Marlow

    1999-01-01

    Explores numerous procedures to evaluate a pupil's reading achievement. Discusses different evaluation methods including criterion-referenced tests; contextualism in reading; discussions in the reading curriculum; conferences with pupils; and using portfolios. Concludes that the best objectives, learning opportunities, appraisal procedures, and an…

  10. Dutch for Reading Knowledge

    NARCIS (Netherlands)

    C. van Baalen; F.R.E. Blom; I. Hollander

    2012-01-01

    This first Dutch for Reading Knowledge book on the market promotes a high level of reading and translation competency by drawing from Dutch grammar, vocabulary and reading strategies, and providing many translation "shortcuts" and tips when tackling complex texts in Dutch. Aimed at students, researc

  11. The Reading Clinic.

    Science.gov (United States)

    Ridout, Susan Ramp; Bailey, Kevin Sue

    Organized to allow undergraduate and graduate students to work together in helping children learn to read, this practicum manual provides guidelines and materials needed for the undergraduate section of the Methods of Teaching Reading II Reading Practicum at Indiana University Southeast. In addition to the syllabus, which includes a course…

  12. Supervising the Reading Clinician.

    Science.gov (United States)

    Ridout, Susan Ramp; Bailey, Kevin Sue

    Designed for graduate students supervising undergraduate work in a reading clinic, this practicum manual provides guidelines and materials needed for the graduate section of the Reading Practicum (Methods of Teaching Reading II) at Indiana University Southeast. In addition to the syllabus, which includes course description and objectives, course…

  13. Voiced Reading and Rhythm

    Institute of Scientific and Technical Information of China (English)

    詹艳萍

    2007-01-01

    Since voiced reading is an important way in learning English,rhythm is the most critical factor that enables to read beautifully.This article illustrates the relationship between rhythm and voiced reading,the importance of rhythm,and the methods to develop the sense of rhythm.

  14. Prose reading in neglect.

    Science.gov (United States)

    Beschin, Nicoletta; Cisari, Carlo; Cubelli, Roberto; Della Sala, Sergio

    2014-02-01

    Prose reading has been shown to be a very sensitive measure of Unilateral Spatial Neglect. However, little is known about the relationship between prose reading and other measures of neglect and its severity, or between prose reading and single word reading. Thirty participants with a first stroke in the right hemisphere and clear symptoms of spatial neglect in everyday life were assessed with tests of prose reading (text in one column book-like, and in two columns magazine-like), single words reading, and a battery of 13 tests investigating neglect. Seventy percent of these participants omitted words at the beginning of the text (left end), showing Prose Reading Neglect (PRN). The participants showing PRN differed from those not showing PRN only for the overall severity of neglect, and had a lesion centred on the insula, putamen and superior temporal gyrus. Double dissociations emerged between PRN and single word reading neglect, suggesting different cognitive requirements between the two tests: parallel processing in single word reading vs. serial analysis in text reading. Notably, the pattern of neglected text varied dramatically across participants presenting with PRN, including dissociations between reading performance of one and two columns text. Prose reading proved a complex and unique task which should be directly investigated to predict the effects of unilateral neglect. The outcome of this study should also inform clinical assessment and advises given to patients and care-givers.

  15. Frame and Metaphor in Political Games

    OpenAIRE

    Bogost, Ian

    2005-01-01

    This paper offers an approach to analyzing political rhetoric in videogames, and on designing videogames intended to carry ideological bias, based cognitive linguist George Lakoff’s notion of metaphor and frame in political discourse. I argue for two important ways games function in relation to ideological frames, reinforcement and exposition, through examples of art games, political games, and commercial games. Finally, I argue that an explicit design of ideological frames in games is crucia...

  16. Complex Hadamard matrices and Equiangular Tight Frames

    CERN Document Server

    Szöll\\Hosi, Ferenc

    2011-01-01

    In this paper we give a new construction of parametric families of complex Hadamard matrices of square orders, and connect them to equiangular tight frames. The results presented here generalize some of the recent ideas of Bodmann et al. and extend the list of known equiangular tight frames. In particular, a (36,21) frame coming from a nontrivial cube root signature matrix is obtained for the first time.

  17. Seismic Design and Performance of Composite Frames

    OpenAIRE

    Thermou, G.; Elnashai, A. S.; Plumier, André

    2004-01-01

    In this study, the seismic design and performance of composite steel-concrete frames are studied. The new Eurocode 4 and Eurocode 8, which are in a preliminary stage at the moment, are employed for the design of six composite steel-concrete frames. The deficiencies of the codes and the clauses that cause difficulties to the designer are discussed. The inelastic static pushover analysis is employed for obtaining the response of the frames and the overstrength factors. The evaluation of the res...

  18. Comparative Analysis of Frames with Varying Inertia

    OpenAIRE

    Prerana Nampalli; Prakarsh Sangave

    2015-01-01

    This paper presents an elastic seismic response of reinforced concrete frames with 3 variations of heights, i.e. (G+2), (G+4), (G+6) storey models are compared for bare frame and frame with brick infill structures which have been analyzed for gravity as well as seismic forces and their response is studied as the geometric parameters varying from view point of predicting behavior of similar structures subjected to similar loads or load combinations. In this study, two different cas...

  19. Do reading and spelling share a lexicon?

    Science.gov (United States)

    Jones, Angela C; Rawson, Katherine A

    2016-05-01

    In the reading and spelling literature, an ongoing debate concerns whether reading and spelling share a single orthographic lexicon or rely upon independent lexica. Available evidence tends to support a single lexicon account over an independent lexica account, but evidence is mixed and open to alternative explanation. In the current work, we propose another, largely ignored account--separate-but-shared lexica--according to which reading and spelling have separate orthographic lexica, but information can be shared between them. We report three experiments designed to competitively evaluate these three theoretical accounts. In each experiment, participants learned new words via reading training and/or spelling training. The key manipulation concerned the amount of reading versus spelling practice a given item received. Following training, we assessed both response time and accuracy on final outcome measures of reading and spelling. According to the independent lexica account, final performance in one modality will not be influenced by the level of practice in the other modality. According to the single lexicon account, final performance will depend on the overall amount of practice regardless of modality. According to the separate-but-shared account, final performance will be influenced by the level of practice in both modalities but will benefit more from same-modality practice. Results support the separate-but-shared account, indicating that reading and spelling rely upon separate lexica, but information can be shared between them. PMID:26999066

  20. Quantum Mechanics in a Rotating Frame

    OpenAIRE

    Anandan, Jeeva; Suzuki, Jun

    2003-01-01

    The rotating frame is considered in quantum mechanics on the basis of the position dependent boost relating this frame to the non rotating inertial frame. We derive the Sagnac phase shift and the spin coupling with the rotation in the non relativistic limit by a simple treatment. By taking the low energy limit of the Dirac equation with a spin connection, we obtain the Hamiltonian for the rotating frame, which gives rise to all the phase shifts discussed before. Furthermore, we obtain a new p...

  1. Mechanical Energy Change in Inertial Reference Frames

    Science.gov (United States)

    Ghanbari, Saeed

    2016-09-01

    The mechanical energy change of a system in an inertial frame of reference equals work done by the total nonconservative force in the same frame. This relation is covariant under the Galilean transformations from inertial frame S to S', where S' moves with constant velocity relative to S. In the presence of nonconservative forces, such as normal and tension forces, the mechanical energy of a system can be conserved in S and not be conserved in S'. In this paper we find useful relations between the mechanical energy changes in two inertial frames of reference.

  2. Pyramidal space frame and associated methods

    Energy Technology Data Exchange (ETDEWEB)

    Clark, Ryan Michael; White, David; Farr, Jr, Adrian Lawrence

    2016-07-19

    A space frame having a high torsional strength comprising a first square bipyramid and two planar structures extending outward from an apex of the first square bipyramid to form a "V" shape is disclosed. Some embodiments comprise a plurality of edge-sharing square bipyramids configured linearly, where the two planar structures contact apexes of all the square bipyramids. A plurality of bridging struts, apex struts, corner struts and optional internal bracing struts increase the strength and rigidity of the space frame. In an embodiment, the space frame supports a solar reflector, such as a parabolic solar reflector. Methods of fabricating and using the space frames are also disclosed.

  3. Composite curved frames for helicopter fuselage structure

    Science.gov (United States)

    Rich, M. J.; Lowry, D. W.

    1984-01-01

    This paper presents the results of analysis and testing of composite curved frames. A major frame was selected from the UH-60 Black Hawk helicopter and designed as a composite structure. The curved beam effects were expected to increase flange axial stresses and induce transverse bending. A NASTRAN finite element analysis was conducted and the results were used in the design of composite curved frame specimens. Three specimens were fabricated and five static tests were conducted. The NASTRAN analysis and test results are compared for axial, transverse, and Web strains. Results show the curved beam effects are closely predicted by a NASTRAN analysis and the effects increase with loading on the composite frames.

  4. What oral text reading fluency can reveal about reading comprehension

    NARCIS (Netherlands)

    Veenendaal, N.J.; Groen, M.A.; Verhoeven, L.T.W.

    2015-01-01

    Text reading fluency – the ability to read quickly, accurately and with a natural intonation – has been proposed as a predictor of reading comprehension. In the current study, we examined the role of oral text reading fluency, defined as text reading rate and text reading prosody, as a contributor t

  5. Reading Millionaires--It Works!

    Science.gov (United States)

    Baumann, Nancy L.

    1995-01-01

    Describes the successful implementation in a Georgia elementary school of the Reading Millionaires Project, a reading incentive program to promote recreational reading and to create student interest in reading. (SR)

  6. Backreaction: Gauge and Frame Dependences

    CERN Document Server

    Brown, Iain A; Coley, Alan

    2012-01-01

    The cosmological backreaction from perturbations is clearly gauge-dependent, and obviously depends on the choice of averaged Hubble rate. We consider two common choices of Hubble rate and advocate the use of comoving volume-preserving gauges. We highlight two examples valid to an appropriate order in perturbation theory, uniform curvature gauge, which is as close to volume-preserving as possible, and a spatially-traceless uniform cold dark matter gauge which preserves the volume to linear order. We demonstrate the strong gauge- and frame-dependences in averaging. In traceless uniform CDM gauge the backreaction exhibits a strong ultra-violet divergence and can be tuned to an arbitrary magnitude with an appropriate choice of smoothing scale. In uniform curvature gauge we find that for a choice of Hubble rate locked to the spatial surface the backreaction vanishes identically, while for a Hubble rate defined from a fluid's expansion scalar the effective energy density at the current epoch in an Einstein-de Sitte...

  7. Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs

    Directory of Open Access Journals (Sweden)

    Mironov Andrey A

    2009-06-01

    Full Text Available Abstract Background Alternative splicing is an important mechanism for generating functional and evolutionary diversity of proteins in eukaryotes. Here, we studied the frequency and functionality of recently gained, rodent-specific alternative exons. Results We projected the data about alternative splicing of mouse genes to the rat, human, and dog genomes, and identified exons conserved in the rat genome, but missing in more distant genomes. We estimated the frequency of rodent-specific exons while controlling for possible residual conservation of spurious exons. The frequency of rodent-specific exons is higher among predominantly skipped exons and exons disrupting the reading frame. Separation of all genes by the rate of sequence evolution and by gene families has demonstrated that rodent-specific cassette exons are more frequent in rapidly evolving genes and in rodent-specific paralogs. Conclusion Thus we demonstrated that recently gained exons tend to occur in fast-evolving genes, and their inclusion rate tends to be lower than that of older exons. This agrees with the theory that gain of alternative exons is one of the major mechanisms of gene evolution.

  8. Amblyopic reading is crowded.

    Science.gov (United States)

    Levi, Dennis M; Song, Shuang; Pelli, Denis G

    2007-10-26

    We measure acuity, crowding, and reading in amblyopic observers to answer four questions. (1) Is reading with the amblyopic eye impaired because of larger required letter size (i.e., worse acuity) or larger required spacing (i.e., worse crowding)? The size or spacing required to read at top speed is called "critical". For each eye of seven amblyopic observers and the preferred eyes of two normal observers, we measure reading rate as a function of the center-to-center spacing of the letters in central and peripheral vision. From these results, we estimate the critical spacing for reading. We also measured traditional acuity for an isolated letter and the critical spacing for identifying a letter among other letters, which is the classic measure of crowding. For both normals and amblyopes, in both central and peripheral vision, we find that the critical spacing for reading equals the critical spacing for crowding. The identical critical spacings, and very different critical sizes, show that crowding, not acuity, limits reading. (2) Does amblyopia affect peripheral reading? No. We find that amblyopes read normally with their amblyopic eye except that abnormal crowding in the fovea prevents them from reading fine print. (3) Is the normal periphery a good model for the amblyopic fovea? No. Reading centrally, the amblyopic eye has an abnormally large critical spacing but reads all larger spacings at normal rates. This is unlike the normal periphery, in which both critical spacing and maximum reading rate are severely impaired relative to the normal fovea. (4) Can the uncrowded-span theory of reading rate explain amblyopic reading? Yes. The case of amblyopia shows that crowding limits reading solely by determining the uncrowded span: the number of characters that are not crowded. Characters are uncrowded if and only if their spacing is more than critical. The text spacing may be uniform, but the observer's critical spacing increases with distance from fixation, so the

  9. Cosmic alternatives?

    Science.gov (United States)

    Gregory, Ruth

    2009-04-01

    "Cosmologists are often in error but never in doubt." This pithy characterization by the Soviet physicist Lev Landau sums up the raison d'être of Facts and Speculations in Cosmology. Authors Jayant Narlikar and Geoffrey Burbidge are proponents of a "steady state" theory of cosmology, and they argue that the cosmological community has become fixated on a "Big Bang" dogma, suppressing alternative viewpoints. This book very much does what it says on the tin: it sets out what is known in cosmology, and puts forward the authors' point of view on an alternative to the Big Bang.

  10. READING ALOUD STRATEGIES IN READING ENGLISH TEXTS

    OpenAIRE

    Iyen Nurlaelawati; Shofa Dzulqodah

    2014-01-01

    Abstract: Reading aloud by a young language learner shows unique patterns as the evidence of his/her language data processing. This study, thus, explored the strategies applied by an Indonesian young language learner to read English written texts aloud to identify errors that actually bring certain benefits in her language learning process such as making intelligent guesses when she encountered unfamiliar words. It adopted qualitative case study design involving a seven-year old girl as the s...

  11. Growing Alternatives

    DEFF Research Database (Denmark)

    Bagger-Petersen, Mai Corlin

    2014-01-01

    From 2014, Anhui Province will pilot a reform of the residential land market in China, thus integrating rural Anhui in the national housing market. In contrast, artist and activist Ou Ning has proposed the Bishan time money currency, intending to establish an alternative economic circuit in Bishan...

  12. Evaluation of Reading Support Tools by Reading Comprehension Tests and Reading Speed Tests

    OpenAIRE

    小谷, 克則; 吉見, 毅彦; 九津見, 毅; 佐田, いち子; 井佐原, 均

    2005-01-01

    This paper introduces our reading process monitoring systems and also presents the experimental results that show the adequacy of our reading data. Our system divides a text into reading areas and records reading time for each area. We conducted two experiments using this tool to verify the adequacy of our reading process data. In the first experiment, we examined whether the reading process can distinguish easy text reading and difficult text reading, and confirmed the adequacy of our readin...

  13. Sustainable food and agriculture: stakeholder's frames

    NARCIS (Netherlands)

    B. van Gorp; M.J. van der Goot

    2012-01-01

    Despite its importance, the notion of sustainability is open for discursive struggle. This article's primary objective is to acquire insight into the manner in which the principal stakeholders strategically use frames in their public communication about sustainable food and agriculture. A framing an

  14. Parametric Study Of Window Frame Geometry

    DEFF Research Database (Denmark)

    Zajas, Jan Jakub; Heiselberg, Per

    2013-01-01

    is conducted to determine which of the parameters describing the frame have the highest impact on its thermal performance. Afterwards, an optimization process is conducted on each frame in order to optimize the design with regard to three objectives: minimizing the thermal transmittance, maxim izing the net...

  15. Teaching the Dynamics of Framing Competitions

    Science.gov (United States)

    Rinke, Eike Mark

    2012-01-01

    Framing theory is one of the most thriving and complex fields of communication theory, and as such it has grown to be an integral part of many political communication, public opinion, and communication theory courses. Part of the complexity stems from scholars' efforts to develop accounts of framing processes that are closer to the "real world" of…

  16. Temporal Consequences, Message Framing, and Consideration of Future Consequences: Persuasion Effects on Adult Fruit Intake Intention and Resolve.

    Science.gov (United States)

    de Bruijn, Gert-Jan; Budding, Jeen

    2016-08-01

    Message framing is a persuasive strategy that has seen mixed evidence for promoting fruit intake intentions, potentially because framed messages for fruit intake have not (a) explicitly compared short-term consequences versus long-term consequences, (b) considered individual-level differences in time perspective, and (c) used alternative measures of fruit intake intentions. In the present online study, the effects of persuasive messages created from temporal context (short term vs. long term) and message frame (gain framed vs. loss framed) were investigated on fruit intake intentions and resolve among a sample of Dutch adults who were categorized as either present oriented or future oriented. For intention and resolve, results showed a significant Type of Frame × Type of Temporal Context interaction, such that gain-framed messages were more persuasive when combined with long-term consequences and loss-framed messages were more persuasive when combined with short-term consequences. The effect sizes for these differences were similar for resolve and intention, but only differences for intentions were significant. No other effects were found. These results demonstrate that message framing theory may usefully consider the inclusion of temporal context of outcomes and alternative motivation measures to maximize their persuasive effects. PMID:27442225

  17. Temporal Consequences, Message Framing, and Consideration of Future Consequences: Persuasion Effects on Adult Fruit Intake Intention and Resolve.

    Science.gov (United States)

    de Bruijn, Gert-Jan; Budding, Jeen

    2016-08-01

    Message framing is a persuasive strategy that has seen mixed evidence for promoting fruit intake intentions, potentially because framed messages for fruit intake have not (a) explicitly compared short-term consequences versus long-term consequences, (b) considered individual-level differences in time perspective, and (c) used alternative measures of fruit intake intentions. In the present online study, the effects of persuasive messages created from temporal context (short term vs. long term) and message frame (gain framed vs. loss framed) were investigated on fruit intake intentions and resolve among a sample of Dutch adults who were categorized as either present oriented or future oriented. For intention and resolve, results showed a significant Type of Frame × Type of Temporal Context interaction, such that gain-framed messages were more persuasive when combined with long-term consequences and loss-framed messages were more persuasive when combined with short-term consequences. The effect sizes for these differences were similar for resolve and intention, but only differences for intentions were significant. No other effects were found. These results demonstrate that message framing theory may usefully consider the inclusion of temporal context of outcomes and alternative motivation measures to maximize their persuasive effects.

  18. Attention Therapy Improves Reading Comprehension in Adjudicated Teens in a Residential Facility

    Science.gov (United States)

    Shelley-Tremblay, John; Langhinrichsen-Rohling, Jennifer; Eyer, Joshua

    2012-01-01

    This study quantified the influence of visual Attention Therapy (AT) on reading skills and Coherent Motion Threshold (CMT) in adjudicated teens with moderate reading disabilities (RD) residing in a residential alternative sentencing program. Forty-two students with below-average reading scores were identified using standardized reading…

  19. An introduction to frames and Riesz bases

    CERN Document Server

    Christensen, Ole

    2016-01-01

    This revised and expanded monograph presents the general theory for frames and Riesz bases in Hilbert spaces as well as its concrete realizations within Gabor analysis, wavelet analysis, and generalized shift-invariant systems.  Compared with the first edition, more emphasis is put on explicit constructions with attractive properties.  Based on the exiting development of frame theory over the last decade, this second edition now includes new sections on the rapidly growing fields of LCA groups, generalized shift-invariant systems, duality theory for as well Gabor frames as wavelet frames, and open problems in the field.   Key features include: *Elementary introduction to frame theory in finite-dimensional spaces * Basic results presented in an accessible way for both pure and applied mathematicians * Extensive exercises make the work suitable as a textbook for use in graduate courses * Full proofs includ ed in introductory chapters; only basic knowledge of functional analysis required * Explicit constructi...

  20. Geometric Properties of Grassmannian Frames for and

    Directory of Open Access Journals (Sweden)

    Benedetto John J

    2006-01-01

    Full Text Available Grassmannian frames are frames satisfying a min-max correlation criterion. We translate a geometrically intuitive approach for two- and three-dimensional Euclidean space ( and into a new analytic method which is used to classify many Grassmannian frames in this setting. The method and associated algorithm decrease the maximum frame correlation, and hence give rise to the construction of specific examples of Grassmannian frames. Many of the results are known by other techniques, and even more generally, so that this paper can be viewed as tutorial. However, our analytic method is presented with the goal of developing it to address unresovled problems in -dimensional Hilbert spaces which serve as a setting for spherical codes, erasure channel modeling, and other aspects of communications theory.

  1. A journey through alternative ways of living

    OpenAIRE

    Baroncelli Torretta, Nicholas

    2014-01-01

    This master thesis examines how an evolution towards sustainable ways of urban living can be achieved through small steps. In this way, a literature review on the fields of design, sustainability and alternative ways of living provides a frame for approaching design for sustainability as well as an historical overview on alternative social movements and its motivations. Consequently, a field research proves Helsinki area as a powerful agent on practices informing sustainable futures. This are...

  2. Exploring the Relationship between Adolescent's Reading Skills, Reading Motivation and Reading Habits

    Science.gov (United States)

    McGeown, Sarah P.; Duncan, Lynne G.; Griffiths, Yvonne M.; Stothard, Sue E.

    2015-01-01

    The present study examines the extent to which adolescents' reading affect (reading motivation) and behaviour (reading habits) predict different components of reading (word reading, comprehension, summarisation and text reading speed) and also adds to the limited research examining group differences (gender, age, ability) in adolescents' reading…

  3. Challenging the frame in the news: The role of issue involvement, attitude, and competing frames

    NARCIS (Netherlands)

    Gorp, B. van; Hendriks Vettehen, P.G.J.; Beentjes, J.W.J.

    2009-01-01

    The present study contributes to the external validity of the framing concept by studying the effects of frames actually utilized in newspaper articles. The study assesses the persuasive influence of such frames on the interpretation of news, and how issue involvement and attitude interfere in this

  4. Informative-frame filtering in endoscopy videos

    Science.gov (United States)

    An, Yong Hwan; Hwang, Sae; Oh, JungHwan; Lee, JeongKyu; Tavanapong, Wallapak; de Groen, Piet C.; Wong, Johnny

    2005-04-01

    Advances in video technology are being incorporated into today"s healthcare practice. For example, colonoscopy is an important screening tool for colorectal cancer. Colonoscopy allows for the inspection of the entire colon and provides the ability to perform a number of therapeutic operations during a single procedure. During a colonoscopic procedure, a tiny video camera at the tip of the endoscope generates a video signal of the internal mucosa of the colon. The video data are displayed on a monitor for real-time analysis by the endoscopist. Other endoscopic procedures include upper gastrointestinal endoscopy, enteroscopy, bronchoscopy, cystoscopy, and laparoscopy. However, a significant number of out-of-focus frames are included in this type of videos since current endoscopes are equipped with a single, wide-angle lens that cannot be focused. The out-of-focus frames do not hold any useful information. To reduce the burdens of the further processes such as computer-aided image processing or human expert"s examinations, these frames need to be removed. We call an out-of-focus frame as non-informative frame and an in-focus frame as informative frame. We propose a new technique to classify the video frames into two classes, informative and non-informative frames using a combination of Discrete Fourier Transform (DFT), Texture Analysis, and K-Means Clustering. The proposed technique can evaluate the frames without any reference image, and does not need any predefined threshold value. Our experimental studies indicate that it achieves over 96% of four different performance metrics (i.e. precision, sensitivity, specificity, and accuracy).

  5. Frames and knowledge in mixed media: how activation changes information intake.

    Science.gov (United States)

    Veenstra, Aaron S; Sayre, Ben; Shah, Dhavan V; McLeod, Douglas M

    2008-08-01

    Many people consider strategic framing, the journalistic tendency to reduce politics to a game or competition focused on the tactical maneuvers of political actors, to be harmful to democracy because it erodes citizen interest in the democratic process. Our results demonstrate that this is not always the case. Testing the effects of textual strategic frames and video processing in a digital environment, we show that strategic frames may also provide a context that is more conducive to learning in mixed media news environments than that provided by value frames, those focused on the value conflict between principled policy opponents. Further analysis reveals that this effect is most clearly seen among people who read political blogs (i.e., those who are already active and interested in politics). Our data suggest that for individuals with cognitive networks built around ideological concerns, such as blog readers, value-framed messages provide cues to stop encoding new information, while strategically framed messages lead people to continue absorbing and learning in mixed media environments. PMID:18721093

  6. HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

    Directory of Open Access Journals (Sweden)

    Sun Yanni

    2011-05-01

    Full Text Available Abstract Background Protein domain classification is an important step in metagenomic annotation. The state-of-the-art method for protein domain classification is profile HMM-based alignment. However, the relatively high rates of insertions and deletions in homopolymer regions of pyrosequencing reads create frameshifts, causing conventional profile HMM alignment tools to generate alignments with marginal scores. This makes error-containing gene fragments unclassifiable with conventional tools. Thus, there is a need for an accurate domain classification tool that can detect and correct sequencing errors. Results We introduce HMM-FRAME, a protein domain classification tool based on an augmented Viterbi algorithm that can incorporate error models from different sequencing platforms. HMM-FRAME corrects sequencing errors and classifies putative gene fragments into domain families. It achieved high error detection sensitivity and specificity in a data set with annotated errors. We applied HMM-FRAME in Targeted Metagenomics and a published metagenomic data set. The results showed that our tool can correct frameshifts in error-containing sequences, generate much longer alignments with significantly smaller E-values, and classify more sequences into their native families. Conclusions HMM-FRAME provides a complementary protein domain classification tool to conventional profile HMM-based methods for data sets containing frameshifts. Its current implementation is best used for small-scale metagenomic data sets. The source code of HMM-FRAME can be downloaded at http://www.cse.msu.edu/~zhangy72/hmmframe/ and at https://sourceforge.net/projects/hmm-frame/.

  7. Framing the Problem of Radioactive Waste: Public and Institutional Perspectives

    International Nuclear Information System (INIS)

    radioactive waste in the current context of UK society. The author presents the method as a useful, practical and cost effective way of addressing questions of framing, and goes on to argue that not only is this essential as a first stage of developing policies, but that framing needs to be re-assessed over time to enable changes to be mapped and incorporated into policy. The results of the study show clearly the use the general public make of their particular cultural resources in arguing towards a position on what the issues are and how they should be managed, including multiple references to other issues which are seen as similar or having similar components. The study also showed a considerable degree of congruence between different groups, providing a valuable starting point for the re-evaluation of UK radioactive waste management policy. The findings are related to other contemporary studies in the UK, which generally support the overall findings. A problem is identified, however, in that responsible institutions, with their existing practices of understanding the nature of the problem, can find it difficult to integrate the both the concept of framing and the alternatives understandings of the problem which are articulated through ration

  8. Framing the Problem of Radioactive Waste: Public and Institutional Perspectives

    Energy Technology Data Exchange (ETDEWEB)

    Hunt, Jane [Lancaster Univ. (United Kingdom). Centre for the Study of Environmental Change

    2001-07-01

    frame the issue of radioactive waste in the current context of UK society. The author presents the method as a useful, practical and cost effective way of addressing questions of framing, and goes on to argue that not only is this essential as a first stage of developing policies, but that framing needs to be re-assessed over time to enable changes to be mapped and incorporated into policy. The results of the study show clearly the use the general public make of their particular cultural resources in arguing towards a position on what the issues are and how they should be managed, including multiple references to other issues which are seen as similar or having similar components. The study also showed a considerable degree of congruence between different groups, providing a valuable starting point for the re-evaluation of UK radioactive waste management policy. The findings are related to other contemporary studies in the UK, which generally support the overall findings. A problem is identified, however, in that responsible institutions, with their existing practices of understanding the nature of the problem, can find it difficult to integrate the both the concept of framing and the alternatives understandings of the problem which are articulated through ration.

  9. Framework for risk analysis in Multimedia Environmental Systems (FRAMES)

    Energy Technology Data Exchange (ETDEWEB)

    Whelan, G.; Buck, J.W.; Castleton, K.J.; Hoopes, B.L.; Pelton, M.A.; McDonald, J.P.; Gelston, G.M.; Taira, R.Y. [Pacific Northwest National Lab., Richland, WA (United States)

    1998-05-01

    The objectives of this workshop are to (1) provide the NRC staff and the public with an overview of currently available Federally-Sponsored dose models appropriate for decommissioning assessments and (2) discuss NRC staff-developed questions related to model selection criteria with the final rule on ``Radiological Criteria for License Termination`` (62 FR 39058). For over 40 years, medium specific models have been and will continue to be developed in an effort to understand and predict environmental phenomena, including fluid-flow patterns, contaminant migration and fate, human or wildlife exposures, impacts from specific toxicants to specific species and their organs, cost-benefit analyses, impacts from remediation alternatives, etc. For nearly 40 years, medium-specific models have been combined for either sequential or concurrent assessments. The evolution of multiple-media assessment tools has followed a logic progression. To allow a suite of users the flexibility and versatility to construct, combine, and couple attributes that meet their specific needs without unnecessarily burdening the user with extraneous capabilities, the development of a computer-based methodology to implement a Risk Analysis in Multimedia Environmental Systems (FRAMES) was begun in 1994. FRAMES represents a platform which links elements together and yet does not represent the models that are linked to or within it; therefore, changes to elements that are linked to or within FRAMES do not change the framework.

  10. From home safety to international terrorism: how Italian talk shows framed migration after the Paris attacks

    OpenAIRE

    Giovanni Brancato; Alessandro Ricci; Melissa Stolfi

    2016-01-01

    This article investigates the migrants' representation in the Italian talk shows and how new reading frames are developed after the Paris terrorist attacks in November 2015. The theoretical framework is composed by studies on migrants' representation in media. After recognition of all the primetime Italian talk shows that have been broadcasted in the period between 14 November 2015 and 14 January 2016, we have chosen three: Ballarò, Quinta Colonna e Piazza Pulita. The selected corpus has been...

  11. Alternative Design of Postgraduate English Writing Course

    Institute of Scientific and Technical Information of China (English)

    王芬

    2008-01-01

    This paper presents an alternative design of postgraduate English writing course to meet the requirement of the current postgraduate English teaching reform.The author believes that efficiently-organized writing activities based on practical needs could refresh teaching frame- work and consequently assist postgraduates in English writing.

  12. Framing the Genetics Curriculum for Social Justice: An Experimental Exploration of How the Biology Curriculum Influences Beliefs about Racial Difference

    Science.gov (United States)

    Donovan, Brian M.

    2016-01-01

    This field experiment manipulated the racial framing of a reading on human genetic disease to explore whether racial terminology in the biology curriculum affects how adolescents explain and respond to the racial achievement gap in American education. Carried out in a public high school in the San Francisco Bay Area, students recruited for the…

  13. Improve your reading

    CERN Document Server

    Fry, Ron

    2012-01-01

    Help your students discover the practical solution to their reading frustrations, with Improve Your Reading. Written by bestselling author and education advocate Ron Fry, this book avoids gimmicks and tricks in favor of proven strategies that will help your students better retain and comprehend what they've read in any textbook, in any course, at any academic level. Endlessly adaptable to each student's individual learning needs, the text focuses on fundamental skills students can carry beyond the classroom.

  14. High frame rate measurements of semiconductor pixel detector readout IC

    International Nuclear Information System (INIS)

    We report on high count rate and high frame rate measurements of a prototype IC named FPDR90, designed for readouts of hybrid pixel semiconductor detectors used for X-ray imaging applications. The FPDR90 is constructed in 90 nm CMOS technology and has dimensions of 4 mm×4 mm. Its main part is a matrix of 40×32 pixels with 100 μm×100 μm pixel size. The chip works in the single photon counting mode with two discriminators and two 16-bit ripple counters per pixel. The count rate per pixel depends on the effective CSA feedback resistance and can be set up to 6 Mcps. The FPDR90 can operate in the continuous readout mode, with zero dead time. Due to the architecture of digital blocks in pixel, one can select the number of bits read out from each counter from 1 to 16. Because in the FPDR90 prototype only one data output is available, the frame rate is 9 kfps and 72 kfps for 16 bits and 1 bit readout, respectively (with nominal clock frequency of 200 MHz).

  15. High frame rate measurements of semiconductor pixel detector readout IC

    Science.gov (United States)

    Szczygiel, R.; Grybos, P.; Maj, P.

    2012-07-01

    We report on high count rate and high frame rate measurements of a prototype IC named FPDR90, designed for readouts of hybrid pixel semiconductor detectors used for X-ray imaging applications. The FPDR90 is constructed in 90 nm CMOS technology and has dimensions of 4 mm×4 mm. Its main part is a matrix of 40×32 pixels with 100 μm×100 μm pixel size. The chip works in the single photon counting mode with two discriminators and two 16-bit ripple counters per pixel. The count rate per pixel depends on the effective CSA feedback resistance and can be set up to 6 Mcps. The FPDR90 can operate in the continuous readout mode, with zero dead time. Due to the architecture of digital blocks in pixel, one can select the number of bits read out from each counter from 1 to 16. Because in the FPDR90 prototype only one data output is available, the frame rate is 9 kfps and 72 kfps for 16 bits and 1 bit readout, respectively (with nominal clock frequency of 200 MHz).

  16. High frame rate measurements of semiconductor pixel detector readout IC

    Energy Technology Data Exchange (ETDEWEB)

    Szczygiel, R., E-mail: robert.szczygiel@agh.edu.pl [AGH University of Science and Technology, Department of Measurement and Instrumentation, Al. Mickiewicza 30, 30-059 Cracow (Poland); Grybos, P.; Maj, P. [AGH University of Science and Technology, Department of Measurement and Instrumentation, Al. Mickiewicza 30, 30-059 Cracow (Poland)

    2012-07-11

    We report on high count rate and high frame rate measurements of a prototype IC named FPDR90, designed for readouts of hybrid pixel semiconductor detectors used for X-ray imaging applications. The FPDR90 is constructed in 90 nm CMOS technology and has dimensions of 4 mm Multiplication-Sign 4 mm. Its main part is a matrix of 40 Multiplication-Sign 32 pixels with 100 {mu}m Multiplication-Sign 100 {mu}m pixel size. The chip works in the single photon counting mode with two discriminators and two 16-bit ripple counters per pixel. The count rate per pixel depends on the effective CSA feedback resistance and can be set up to 6 Mcps. The FPDR90 can operate in the continuous readout mode, with zero dead time. Due to the architecture of digital blocks in pixel, one can select the number of bits read out from each counter from 1 to 16. Because in the FPDR90 prototype only one data output is available, the frame rate is 9 kfps and 72 kfps for 16 bits and 1 bit readout, respectively (with nominal clock frequency of 200 MHz).

  17. On Reading Test

    Institute of Scientific and Technical Information of China (English)

    孙健

    2005-01-01

    There has been a long discussion over the construct validity of reading tests. In china's reading tests, multiple choice is the main test method in view of the4 long controversy over the validity of multiple choice, construct validation is called for to empirically test the hypothesized relationships between test scores and abilities. The national CET committee conducted a comprehensive validation study. As part of the project, the specialists studied the reading comprehension test's validity by qualitative means, namely "introspective verbal reports". The analysis revealed that an overwhelming majority of the questions items were handled through "expected reading operations".

  18. The Reading Brain

    OpenAIRE

    Kassuba, Tanja; Kastner, Sabine

    2015-01-01

    Do you enjoy reading books? Reading is one of the unique activities that only humans do, and we have not been doing it for that long! Humans have talked to each other using a language system with grammatical rules for at least 100,000 years, but we have been reading and writing only for a few thousand years! What happens in our brain when we read? Our brain has developed a region that is specialized in knowing what written words look like. It closely works together with other parts of the bra...

  19. Assisted Reading with Digital Audiobooks for Students with Reading Disabilities

    Science.gov (United States)

    Esteves, Kelli J.; Whitten, Elizabeth

    2011-01-01

    The goal of this study was to compare the efficacy of assisted reading with digital audiobooks with the traditional practice of sustained silent reading (SSR) in terms of reading fluency and reading attitude with upper elementary students with reading disabilities. Treatment group participants selected authentic children's literature and engaged…

  20. Reading Strategy: Tackling Reading through Topic and Main Ideas

    Science.gov (United States)

    Naidu, Bharathi; Briewin, Marshal; Embi, Mohamed Amin

    2013-01-01

    Reading comprehension is one of the four skills essential in learning English. In a reading class, students tend to read all the information provided in reading materials, but how much do they actually retain? This study explores whether learners use identification of the topic and main ideas as a reading strategy to assist in reading…

  1. The Art of Re-Framing

    OpenAIRE

    Ana Navarro Wagner

    2015-01-01

    This article exposes a way of re-framing the experiences of four European music therapists with local disadvantaged children in Gulu (North of Uganda, Africa) from a Community Music Therapy point of view. CoMT offers certain qualities that help to rethink conventional bounderies in their contexts and to widen the cultural sensitivity of the music therapists. The power of re-framing according to the context is the power of looking with other frames, the power of allowing other patterns to arise.

  2. The Art of Re-Framing

    Directory of Open Access Journals (Sweden)

    Ana Navarro Wagner

    2015-01-01

    Full Text Available This article exposes a way of re-framing the experiences of four European music therapists with local disadvantaged children in Gulu (North of Uganda, Africa from a Community Music Therapy point of view. CoMT offers certain qualities that help to rethink conventional bounderies in their contexts and to widen the cultural sensitivity of the music therapists. The power of re-framing according to the context is the power of looking with other frames, the power of allowing other patterns to arise.

  3. Elastoplastic analysis of knee bracing frame

    Institute of Scientific and Technical Information of China (English)

    HUANG Zhen; LI Qing-song; CHEN Long-zhu

    2005-01-01

    The knee bracing steel frame (KBF) is a new kind of energy dissipating frame, which combines excellent ductility and lateral stiffness. As the structural fuse of the frame, the knee element will yield first during a severe earthquake so that no damage occurs to the major structural members and the rehabilitation is easy and economical. To help fully understand the relations between its seismic performance and the structural parameters, systematic elastoplastic analysis of the KBF structure with finite element method was conducted in this work. Finally, general design recommendations were made according to the results of the analysis.

  4. Chaotic inflation in Jordan frame supergravity

    CERN Document Server

    Lee, Hyun Min

    2010-01-01

    We consider the inflationary scenario with non-minimal coupling in 4D Jordan frame supergravity. We find that there occurs a tachyonic instability along the direction of the accompanying non-inflaton field in generic Jordan frame supergravity models. We propose a higher order correction to the Jordan frame function for solving the tachyonic mass problem and show that the necessary correction can be naturally generated by the heavy thresholds without spoiling the slow-roll conditions. We discuss the implication of the result on the Higgs inflation in NMSSM.

  5. Quantum Stackelberg Duopoly in a Noninertial Frame

    Institute of Scientific and Technical Information of China (English)

    Salman Khan; M. Khalid Khan

    2011-01-01

    We study the influence of the Unruh effect on quantum Stackelberg duopoly.It is shown that the acceleration of a noninertial frame strongly affects the payoffs of the firms. The validation of the subgame perfect Nash equilibrium is limited to a particular range of acceleration of the noninertial frame.The benefit of the initial state entanglement in the quantum form of the duopoly in the inertial frame is adversely affected by the acceleration.The duopoly can become a follower advantage only in a small region of the acceleration.

  6. Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads

    OpenAIRE

    Zhai, Zhiyuan; Reinert, Gesine; Song, Kai; Waterman, Michael S.; Luan, Yihui; Sun, Fengzhu

    2012-01-01

    Next generation sequencing (NGS) technologies are now widely used in many biological studies. In NGS, sequence reads are randomly sampled from the genome sequence of interest. Most computational approaches for NGS data first map the reads to the genome and then analyze the data based on the mapped reads. Since many organisms have unknown genome sequences and many reads cannot be uniquely mapped to the genomes even if the genome sequences are known, alternative analytical methods are needed fo...

  7. TruSPAdes: barcode assembly of TruSeq synthetic long reads.

    Science.gov (United States)

    Bankevich, Anton; Pevzner, Pavel A

    2016-03-01

    The recently introduced TruSeq synthetic long read (TSLR) technology generates long and accurate virtual reads from an assembly of barcoded pools of short reads. The TSLR method provides an attractive alternative to existing sequencing platforms that generate long but inaccurate reads. We describe the truSPAdes algorithm (http://bioinf.spbau.ru/spades) for TSLR assembly and show that it results in a dramatic improvement in the quality of metagenomics assemblies. PMID:26828418

  8. Myths, Misconceptions, and Misunderstandings: A Different Spin on Coriolis--Applying Frame of Reference

    Science.gov (United States)

    DiSpezio, Michael A.

    2011-01-01

    This article addresses misconceptions surrounding the Coriolis force and describes how it should be presented as a function within inertial and noninertial frames of reference. Not only does this demonstrate the nature of science as it strives to best interpret the natural world (and presents alternative explanations), but it offers a rich…

  9. Recursive Frame Analysis: Reflections on the Development of a Qualitative Research Method

    Science.gov (United States)

    Keeney, Hillary; Keeney, Bradford

    2012-01-01

    The origin of recursive frame analysis (RFA) is revisited and discussed as a postmodern alternative to modernist therapeutic models and research methods that foster hegemony of a preferred therapeutic metaphor, narrative, or strategy. It encourages improvisational performance while enabling a means of scoring the change and movement of the…

  10. News Media Framing of Negative Campaigning

    DEFF Research Database (Denmark)

    Pedersen, Rasmus Tue

    2014-01-01

    News media coverage of election campaigns is often characterized by use of the strategic game frame and a focus on politicians’ use of negative campaigning. However, the exact relationship between these two characteristics of news coverage is largely unexplored. This article theorizes that consumer...... demand and norms of journalistic independence might induce the news media outlets to cover negative campaigning with a strategic game frame. A comprehensive content analysis based on several newspaper types, several election campaigns, and several different measurements of media framing confirms...... that news coverage of negative campaigning does apply the strategic game frame to a significantly larger degree than articles covering positive campaigning. This finding has significant implications for campaigning politicians and for scholars studying campaign and media effects....

  11. Lifting scheme of symmetric tight wavelets frames

    Institute of Scientific and Technical Information of China (English)

    ZHUANG BoJin; YUAN WeiTao; PENG LiZhong

    2008-01-01

    This paper proposes a method to realize the lifting scheme of tight frame wavelet filters. As for 4-channel tight frame wavelet filter, the tight frame transforms' ma-trix is 2×4, but the lifting scheme transforms' matrix must be 4×4. And in the case of 3-channel tight frame wavelet filter, the transforms' matrix is 2×3, but the lifting scheme transforms' matrix must be 3×3. In order to solve this problem, we intro-duce two concepts: transferred polyphase matrix for 4-channel filters and trans-ferred unitary matrix for 3-channel filters. The transferred polyphase matrix is sym-metric/antisymmetric. Thus, we use this advantage to realize the lifting scheme.

  12. Covariance and the hierarchy of frame bundles

    Science.gov (United States)

    Estabrook, Frank B.

    1987-01-01

    This is an essay on the general concept of covariance, and its connection with the structure of the nested set of higher frame bundles over a differentiable manifold. Examples of covariant geometric objects include not only linear tensor fields, densities and forms, but affinity fields, sectors and sector forms, higher order frame fields, etc., often having nonlinear transformation rules and Lie derivatives. The intrinsic, or invariant, sets of forms that arise on frame bundles satisfy the graded Cartan-Maurer structure equations of an infinite Lie algebra. Reduction of these gives invariant structure equations for Lie pseudogroups, and for G-structures of various orders. Some new results are introduced for prolongation of structure equations, and for treatment of Riemannian geometry with higher-order moving frames. The use of invariant form equations for nonlinear field physics is implicitly advocated.

  13. Vibration of x-braced portal frames

    Science.gov (United States)

    Chang, C. H.; Wang, P. Y.; Lin, Y. W.

    1987-09-01

    Both free and forced vibrations of elastic X-braced portal frames are investigated. Solutions of the Euler-Bernoulli equation for the transverse vibration coupled with the axial vibration are used. The first five natural frequencies, with the angle of inclination, α, of the bracing bars ranging from 15° to 75°, with different slenderness ratios, R, of the columns, and different stiffness of the floor beam and crossing bars, are presented along with two sets of the natural modes of the frames with α = 45°. For the forced vibration, the dynamic responses of the frames with a concentrated horizontal time dependent force acting at a top joint are studied. The responses of the frames with α = 45° are analyzed in detail.

  14. Compactly supported frames for decomposition spaces

    DEFF Research Database (Denmark)

    Nielsen, Morten; Rasmussen, Kenneth Niemann

    2012-01-01

    In this article we study a construction of compactly supported frame expansions for decomposition spaces of Triebel-Lizorkin type and for the associated modulation spaces. This is done by showing that finite linear combinations of shifts and dilates of a single function with sufficient decay...... in both direct and frequency space can constitute a frame for Triebel-Lizorkin type spaces and the associated modulation spaces. First, we extend the machinery of almost diagonal matrices to Triebel-Lizorkin type spaces and the associated modulation spaces. Next, we prove that two function systems which...... are sufficiently close have an almost diagonal “change of frame coefficient” matrix. Finally, we approximate to an arbitrary degree an already known frame for Triebel-Lizorkin type spaces and the associated modulation spaces with a single function with sufficient decay in both direct and frequency space....

  15. High Performance Commercial Fenestration Framing Systems

    Energy Technology Data Exchange (ETDEWEB)

    Mike Manteghi; Sneh Kumar; Joshua Early; Bhaskar Adusumalli

    2010-01-31

    A major objective of the U.S. Department of Energy is to have a zero energy commercial building by the year 2025. Windows have a major influence on the energy performance of the building envelope as they control over 55% of building energy load, and represent one important area where technologies can be developed to save energy. Aluminum framing systems are used in over 80% of commercial fenestration products (i.e. windows, curtain walls, store fronts, etc.). Aluminum framing systems are often required in commercial buildings because of their inherent good structural properties and long service life, which is required from commercial and architectural frames. At the same time, they are lightweight and durable, requiring very little maintenance, and offer design flexibility. An additional benefit of aluminum framing systems is their relatively low cost and easy manufacturability. Aluminum, being an easily recyclable material, also offers sustainable features. However, from energy efficiency point of view, aluminum frames have lower thermal performance due to the very high thermal conductivity of aluminum. Fenestration systems constructed of aluminum alloys therefore have lower performance in terms of being effective barrier to energy transfer (heat loss or gain). Despite the lower energy performance, aluminum is the choice material for commercial framing systems and dominates the commercial/architectural fenestration market because of the reasons mentioned above. In addition, there is no other cost effective and energy efficient replacement material available to take place of aluminum in the commercial/architectural market. Hence it is imperative to improve the performance of aluminum framing system to improve the energy performance of commercial fenestration system and in turn reduce the energy consumption of commercial building and achieve zero energy building by 2025. The objective of this project was to develop high performance, energy efficient commercial

  16. Reading Patterns Changing

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    Modern life is changing the way people read April 23 was the 16th World Book and Copyright Day,also known as the World Book Day.Reading-related problems have once again attracted people’s attention.Today,living a life with an increasingly rapid pace,most people are

  17. Reading Where It Counts

    Science.gov (United States)

    Miller, Harry

    2014-01-01

    In this article, teachers are reminded that their content subject areas require acquainting children with special words or symbols related to that subject area (e.g. mathematics or social studies). Because children can read well does not mean they would be understanding of any special reading skill required in a content subject area; that the…

  18. Reading Authentic Texts

    DEFF Research Database (Denmark)

    Balling, Laura Winther

    2013-01-01

    Most research on cognates has focused on words presented in isolation that are easily defined as cognate between L1 and L2. In contrast, this study investigates what counts as cognate in authentic texts and how such cognates are read. Participants with L1 Danish read news articles in their highly...

  19. Cerebral Laterality and Reading.

    Science.gov (United States)

    Mackworth, Jane F.

    Recent research has confirmed that hemispheric patterns of dominance are related to reading skills. Reading is more complex than speech because it includes a visuo-spatial element. In the great majority of people, the left hemisphere deals with speech and sequencing skills. Visual matching of printed words requires the spatial skills of the right…

  20. EXPERIMENTS IN KINDERGARTEN READING.

    Science.gov (United States)

    BAKER, EVA L.; AND OTHERS

    FOUR PAPERS GIVEN AT THE READING SYMPOSIUM OF THE 1968 AMERICAN EDUCATIONAL RESEARCH ASSOCIATION PRESENT DISCUSSIONS OF THE SOUTHWEST REGIONAL LABORATORY (SWRL) READING PROGRAM. THE FIRST PAPER DESCRIBES OBJECTIVES, CLASSROOM MATERIALS, AND PROCEDURES. OBJECTIVES FOR SIGHT-RECOGNITION, WORD-ATTACK SKILLS, AND COMPREHENSION SKILLS ARE EXPRESSED IN…

  1. Measuring Reading Performance Informally.

    Science.gov (United States)

    Powell, William R.

    To improve the accuracy of the informal reading inventory (IRI), a differential set of criteria is necessary for both word recognition and comprehension scores for different levels and reading conditions. In initial evaluation, word recognition scores should reflect only errors of insertions, omissions, mispronunciations, substitiutions, unkown…

  2. Using Collaborative Strategic Reading.

    Science.gov (United States)

    Klingner, Janette K.; Vaughn, Sharon

    1998-01-01

    Describes collaborative strategic reading (CSR), a technique for teaching students, such as those with learning disabilities, reading comprehension and vocabulary skills in a cooperative setting. Covers teaching the four strategies of CSR (preview, click and clunk, get the gist, and wrap up), as well as teaching students cooperative learning group…

  3. Reading, Writing, and Art

    Science.gov (United States)

    Reist, Kay M.

    2010-01-01

    With No Child Left Behind, schools are cutting extracurricular activities, doing away with aides, and even getting rid of art and physical education so that reading specialists and writing tutors can be hired. But what can the art teachers do to assist in teaching reading and writing skills? The author believes they need to provide their students…

  4. Reading, Writing, and Understanding.

    Science.gov (United States)

    Jacobs, Vicki A.

    2002-01-01

    Describes how secondary-school content-area teachers can improve student comprehension of text material by incorporating reading and writing strategies into their classroom instruction. Illustrates relationships among reading, writing, and understanding. Suggests framework for staff-development program. (Contains 14 references.) (PKP)

  5. Books for Summer Reading.

    Science.gov (United States)

    Phi Delta Kappan, 1996

    1996-01-01

    Suggests several novels for educators' summer reading enjoyment, including classics by Robert Pirsig, Robertson Davies, John Steinbeck, Albert Camus, and Charles Dickens. Educators might also read Alex Kotlowitz's "There Are No Children Here" (Doubleday, 1991) and Sharon Quint's "Schooling Homeless Children" (Teachers College Press, 1994) to gain…

  6. Earthquake Tests of Reinforced Concrete Frames

    DEFF Research Database (Denmark)

    Skjærbæk, P. S.; Nielsen, Søren R.K.; Kirkegaard, Poul Henning

    1997-01-01

    -story reinforced concrete frame in scale 1:5 with the outer measures 2.4 X 3.3 m. The test structure consists of two identical frames spaced 1000 mm on a shaking table. to the observed The dead-load of deck elements and pay load is modelled by 8 RC-beams placed on each storey in span between the two...

  7. Earthquake Tests of Reinforced Concrete Frames

    DEFF Research Database (Denmark)

    Skjærbæk, P. S.; Nielsen, Søren R.K.; Kirkegaard, Poul Henning

    1996-01-01

    -story reinforced concrete frame in scale 1:5 with the outer measures 2.4 X 3.3 m. The test structure consists of two identical frames spaced 1000 mm on a shaking table. to the observed The dead-load of deck elements and pay load is modelled by 8 RC-beams placed on each storey in span between the two...

  8. Explicit bounds of complex exponential frames

    Directory of Open Access Journals (Sweden)

    Boivin André

    2006-01-01

    Full Text Available We discuss the stability of complex exponential frames in , . Specifically, we improve the -theorem and obtain explicit upper and lower bounds for some complex exponential frames perturbed along the real and imaginary axes, respectively. Two examples are given to show that the bounds are best possible. In addition, the growth of the entire functions of exponential type on the integer sequence is estimated.

  9. Quantum Stackelberg duopoly in noninertial frame

    CERN Document Server

    Khan, Salman

    2011-01-01

    We study the influence of Unruh effect on quantum Stackelberg duopoly. We show that the acceleration of noninertial frame strongly effects the payoffs of the firms. The validation of subgame perfect Nash equilibrium is limited to a particular range of acceleration of the noninertial frame. The benefit of initial state entanglement in the quantum form of the duopoly is adversely affected by the acceleration. The duopoly can become as a follower advantage only in a small region of the acceleration.

  10. Equivalence of the Einstein and Jordan frames

    OpenAIRE

    Postma, Marieke; Volponi, Marco

    2014-01-01

    No experiment can measure an absolute scale: every dimensionfull quantity has to be compared to some fixed unit scale in order to be measured, and thus only dimensionless quantities are really physical. The Einstein and Jordan frame are related by a conformal transformation of the metric, which amounts to rescaling all length scales. Since the absolute scale cannot be measured, both frames describe the same physics, and are equivalent. In this article we make this explicit by rewriting the ac...

  11. Stability of wavelet frames with matrix dilations

    DEFF Research Database (Denmark)

    Christensen, Ole; Sun, Wenchang

    2006-01-01

    Under certain assumptions we show that a wavelet frame {Tau(A(j), b(j,k))psi} (j,k is an element of Z) := {vertical bar detA(j)vertical bar(-1/2) psi(A(j)(-1)(x - b(j,k)))} (j,k is an element of Z) in L-2(R-d) remains a frame when the dilation matrices A(j) and the translation parameters b...

  12. General frame structures on quantum principal bundles

    CERN Document Server

    Durdevic, M

    1996-01-01

    A noncommutative-geometric generalization of the classical formalism of frame bundles is developed, incorporating into the theory of quantum principal bundles the concept of the Levi-Civita connection. The construction of a natural differential calculus on quantum principal frame bundles is presented, including the construction of the associated differential calculus on the structure group. General torsion operators are defined and analyzed. Illustrative examples are presented.

  13. Alternative crops

    International Nuclear Information System (INIS)

    Surplus cereal production in the EEC and decreasing product prices, mainly for cereals, has prompted considerable interest for new earnings in arable farming. The objective was to examine whether suggested new crops (fibre, oil, medicinal and alternative grains crops) could be considered as real alternatives. Whether a specific crop can compete economically with cereals and whether there is a market demand for the crop is analyzed. The described possibilities will result in ca. 50,000 hectares of new crops. It is expected that they would not immediately provide increased earnings, but in the long run expected price developments are more positive than for cereals. The area for new crops will not solve the current surplus cereal problem as the area used for new crops is only 3% of that used for cereals. Preconditions for many new crops is further research activities and development work as well as the establishment of processing units and organizational initiatives. Presumably, it is stated, there will then be a basis for a profitable production of new crops for some farmers. (AB) (47 refs.)

  14. Science Fiction: Serious Reading, Critical Reading

    Science.gov (United States)

    Zigo, Diane; Moore, Michael T.

    2004-01-01

    Science fiction deserves a greater respect, serious and critical reading and a better place in high school literature classes. Some of the science fiction books by Isaac Asimov, Alfred Bester, Ray Bradbury and Octavia L. Butler and various activities for incorporating science fiction into the English language arts instruction classroom are…

  15. Grasp Reading Skills to Improve Reading Ability?

    Institute of Scientific and Technical Information of China (English)

    CaoJingt

    2004-01-01

    Reading is a kind of communication, and for most people in most situations it is more important than speaking. For college students today, it is more important for them to obtain the newest information on their own fields through English,rather than showing their English certificates. However, the most common problem students have nowadays, including

  16. Integrating Reading and Writing through Extensive Reading

    Science.gov (United States)

    Park, Jeongyeon

    2016-01-01

    This study explores whether an extensive reading (ER) approach can enhance L2 learners' writing performance in an English for Academic Purposes context. Two classes were compared in terms of writing improvement after one semester: a 'traditional' writing class primarily focused on writing practice and grammar instruction, and an ER class in which…

  17. Speakers' choice of frame in binary choice

    Directory of Open Access Journals (Sweden)

    Marc van Buiten

    2009-02-01

    Full Text Available A distinction is proposed between extit{recommending for} preferred choice options and extit{recommending against} non-preferred choice options. In binary choice, both recommendation modes are logically, though not psychologically, equivalent. We report empirical evidence showing that speakers recommending for preferred options predominantly select positive frames, which are less common when speakers recommend against non-preferred options. In addition, option attractiveness is shown to affect speakers' choice of frame, and adoption of recommendation mode. The results are interpreted in terms of three compatibility effects, (i extit{recommendation mode---valence framing compatibility}: speakers' preference for positive framing is enhanced under extit{recommending for} and diminished under extit{recommending against} instructions, (ii extit{option attractiveness---valence framing compatibility}: speakers' preference for positive framing is more pronounced for attractive than for unattractive options, and (iii extit{recommendation mode---option attractiveness compatibility}: speakers are more likely to adopt a extit{recommending for} approach for attractive than for unattractive binary choice pairs.

  18. Comparative Analysis of Frames with Varying Inertia

    Directory of Open Access Journals (Sweden)

    Prerana Nampalli

    2015-01-01

    Full Text Available This paper presents an elastic seismic response of reinforced concrete frames with 3 variations of heights, i.e. (G+2, (G+4, (G+6 storey models are compared for bare frame and frame with brick infill structures which have been analyzed for gravity as well as seismic forces and their response is studied as the geometric parameters varying from view point of predicting behavior of similar structures subjected to similar loads or load combinations. In this study, two different cases are selected i.e. frames with prismatic members and frames with non-prismatic members. The structural response of various members when geometry changes physically, as in case of linear and parabolic haunches provided beyond the face of columns at beam column joints or step variations as in case of stepped haunches was also studied. Frames have been analyzed statically as well as dynamically using ETABS-9.7.4 software referring IS: 456-2000, IS: 1893 (Part-12002 and the results so obtained are grouped into various categories

  19. Characterization of alternative FBR development strategies

    International Nuclear Information System (INIS)

    Near-term decisions regarding the nature and place of the FBR development program must be made. This study is part of a larger program designed to provide the Department of Energy (DOE) with imformation that can be used to make strategic programmatic decisions. The focus of this report is the description of alternative approaches for developing the FBR and the quantification of the duration and cost of each alternative. The time frames of the alternative approaches are investigated in companion reports (White 1981 and Fraley 1981). The results of these analyses will be described in a summary report

  20. Parafoveal-on-Foveal Effects of Emotional Word Semantics in Reading Chinese Sentences: Evidence from Eye Movements

    Science.gov (United States)

    Yan, Ming; Sommer, Werner

    2015-01-01

    Despite the well-known influence of emotional meaning on cognition, relatively less is known about its effects on reading behavior. We investigated whether fixation behavior during the reading of Chinese sentences is influenced by emotional word meaning in the parafovea. Two-character target words embedded into the same sentence frames provided…

  1. Elementary Teachers' Beliefs about Reading and Knowledge of Reading Content: Relationships to Decisions about Reading Outcomes.

    Science.gov (United States)

    Rupley, William H.; Logan, John W.

    To explore the relationships between teachers' knowledge of basic reading content, beliefs about reading, and decisions about the importance of specified reading learning outcomes, two existing instruments (Knowledge Test of Reading for Elementary Teachers and Propositions About Reading Instruction Inventory) and one researcher-developed…

  2. Role of Reading Engagement in Mediating Effects of Reading Comprehension Instruction on Reading Outcomes

    Science.gov (United States)

    Wigfield, Allan; Guthrie, John T.; Perencevich, Kathleen C.; Taboada, Ana; Klauda, Susan Lutz; McRae, Angela; Barbosa, Pedro

    2008-01-01

    The engagement model of reading development suggests that instruction improves students' reading comprehension to the extent that it increases students' engagement processes in reading. We compared how Concept-Oriented Reading Instruction (CORI) (support for cognitive and motivational processes in reading), strategy instruction (support for…

  3. Forecasting Reading Anxiety for Promoting English-Language Reading Performance Based on Reading Annotation Behavior

    Science.gov (United States)

    Chen, Chih-Ming; Wang, Jung-Ying; Chen, Yong-Ting; Wu, Jhih-Hao

    2016-01-01

    To reduce effectively the reading anxiety of learners while reading English articles, a C4.5 decision tree, a widely used data mining technique, was used to develop a personalized reading anxiety prediction model (PRAPM) based on individual learners' reading annotation behavior in a collaborative digital reading annotation system (CDRAS). In…

  4. The Relationships between Korean University Students' Reading Attitude, Reading Strategy Use, and Reading Proficiency

    Science.gov (United States)

    Kim, Hyangil

    2016-01-01

    This present study investigated the relationships among L2 readers' reading attitude, reading strategy use, and reading proficiency in order to identify patterns caused by individuals' differences. For this study, 153 Korean university students replied to a reading attitude and reading strategy questionnaire. An ANOVA and frequency analysis were…

  5. Discourse Awareness and Teaching Reading

    Institute of Scientific and Technical Information of China (English)

    FEI Jun

    2014-01-01

    Reading is an interactive process and discourse knowldege facilitates interpretation of the text. This paper discusses the thoery of reading from a discouse apporach, explores the interactive approach of teaching reading and discusses pedagogical impi-cations with contexts concerned.

  6. The Componential Model of Reading: Predicting First Grade Reading Performance of Culturally Diverse Students From Ecological, Psychological, and Cognitive Factors Assessed at Kindergarten Entry

    OpenAIRE

    Hernandez, Miriam; Folsom, Jessica S.; Otaiba, Stephanie Al; Greulich, Luana; Thomas-Tate, Shurita; Connor, Carol M

    2012-01-01

    This study, framed by the component model of reading (CMR), examined the relative importance of kindergarten-entry predictors of first grade reading performance. Specifically, elements within the ecological domain included dialect, maternal education, amount of preschool, and home literacy; elements within the psychological domain included teacher-reported academic competence, social skills, and behavior; and elements within the cognitive domain included initial vocabulary, phonological, and ...

  7. Alternative Energies

    Energy Technology Data Exchange (ETDEWEB)

    Planting, A.; De saint Jacob, Y.; Verwijs, H.; Belin, H.; Preesman, L.

    2009-03-15

    In two articles, one interview and one column attention is paid to alternative energies. The article 'A new light on saving energy' discusses the option to save energy by modernising lighting systems in urban areas. The column 'View from Paris' focuses on investment decisions in France with regard to renewable energy and energy savings. The article 'Europe turns a blind eye to big battery' discusses developments in batteries to store energy. The interview concerns fuel cell expert and formerly President of UTC Power Jan van Dokkum. The last article gives a brief overview of the European Energy Research Alliance (EERA) and the challenges this alliance will have to face with regard to climate change and energy security.

  8. Energy alternatives

    International Nuclear Information System (INIS)

    English. A special committe of the Canadian House of Commons was established on 23 May 1980 to investigate the use of alternative energy sources such as 'gasohol', liquified coal, solar energy, methanol, wind and tidal power, biomass, and propane. In its final report, the committee envisions an energy system for Canada based on hydrogen and electricity, using solar and geothermal energy for low-grade heat. The committe was not able to say which method of generating electricty would dominate in the next century, although it recommends that fossil fuels should not be used. The fission process is not specifically discussed, but the outlook for fusion was investigated, and continued governmental support of fusion research is recommended. The report proposes some improvements in governmental energy organizations and programs

  9. The neural bases of framing effects in social dilemmas

    DEFF Research Database (Denmark)

    Macoveanu, Julian; Ramsøy, Thomas; Skov, Martin;

    2016-01-01

    Human behavior in social dilemmas is strongly framed by the social context, but the mechanisms underlying this framing effect remain poorly understood. To identify the behavioral and neural responses mediating framing of social interactions, participants underwent functional MRI while playing...

  10. The Neural Bases of Framing Effects in Social Dilemmas

    DEFF Research Database (Denmark)

    Macoveanu, Julian; Ramsøy, Thomas; Skov, Martin;

    2015-01-01

    Human behavior in social dilemmas is strongly framed by the social context, but the mechanisms underlying this framing effect remains poorly understood. To identify the behavioral and neural responses mediating framing of social interactions, subjects underwent functional Magnetic Resonance Imagi...

  11. The neural bases of framing effects in social dilemmas

    DEFF Research Database (Denmark)

    Macoveanu, Julian; Ramsøy, Thomas; Skov, Martin;

    Human behavior in social dilemmas is strongly framed by the social context, but the mechanisms underlying this framing effect remains poorly understood. To identify the behavioral and neural responses mediating framing of social interactions, subjects underwent functional Magnetic Resonance Imagi...

  12. Expansion of Bessel and g -Bessel sequences to dual frames and dual g -frames

    OpenAIRE

    Golsa Kavian; Mohammad Sadegh Asgari

    2014-01-01

    In this paper we study the duality of Bessel and $g$-Bessel sequences‎ ‎in Hilbert spaces‎. ‎We show that a Bessel sequence is an inner summand of a frame and‎ ‎the sum of any Bessel sequence with Bessel bound less than one with a Parseval frame is‎ ‎a frame‎. ‎Next we develop this results to the g-frame situation.

  13. Lenses on Reading An Introduction to Theories and Models

    CERN Document Server

    Tracey, Diane H

    2012-01-01

    This widely adopted text explores key theories and models that frame reading instruction and research. Readers learn why theory matters in designing and implementing high-quality instruction and research; how to critically evaluate the assumptions and beliefs that guide their own work; and what can be gained by looking at reading through multiple theoretical lenses. For each theoretical model, classroom applications are brought to life with engaging vignettes and teacher reflections. Research applications are discussed and illustrated with descriptions of exemplary studies. New to This Edition

  14. Metacognition and Reading Comprehension

    Institute of Scientific and Technical Information of China (English)

    Cecilia Chang

    2000-01-01

    @@ Introduction Reading is a mysterious process that has attracted attention from psychologists, reading researchers and educators alike for decades. Currently, reading is viewed as a meaningconstructing process where the reader interacts with the text by simultaneously using information from a variety of sources ranging from one's background knowledge of the content and about the world to the knowledge about the language in which the text is written (Mulling, 1994). Moreover, reading comprehension is achieved only after skillful orchestration of all the resources the reader possess when engaged in the act of reading. Among the various kinds of strategies a reader needs during the reading process are the monitoring strategies. In order to fully utilize the strategies, the reader needs to possess good metacognition. Metacognition refers to one's deliberate conscious control of one's cognition actions (Brown, 1980). Since it is crucial for success that we know what we know and what we don't know and, consequently what to do about what we know and don't know, it is not surprising to find the notion of metacognition being stressed in almost every situation of learning. Given the importance of metacognition in successful learning, the purpose of this paper is to explore the role metacognition plays in reading comprehension, and consequently, identify future research directions.

  15. Reading between eye saccades.

    Directory of Open Access Journals (Sweden)

    Caroline Blais

    Full Text Available BACKGROUND: Skilled adult readers, in contrast to beginners, show no or little increase in reading latencies as a function of the number of letters in words up to seven letters. The information extraction strategy underlying such efficiency in word identification is still largely unknown, and methods that allow tracking of the letter information extraction through time between eye saccades are needed to fully address this question. METHODOLOGY/PRINCIPAL FINDINGS: The present study examined the use of letter information during reading, by means of the Bubbles technique. Ten participants each read 5,000 five-letter French words sampled in space-time within a 200 ms window. On the temporal dimension, our results show that two moments are especially important during the information extraction process. On the spatial dimension, we found a bias for the upper half of words. We also show for the first time that letter positions four, one, and three are particularly important for the identification of five-letter words. CONCLUSIONS/SIGNIFICANCE: Our findings are consistent with either a partially parallel reading strategy or an optimal serial reading strategy. We show using computer simulations that this serial reading strategy predicts an absence of a word-length effect for words from four- to seven letters in length. We believe that the Bubbles technique will play an important role in further examining the nature of reading between eye saccades.

  16. Frame-Based Compressed Sensing Of Speech Signal

    OpenAIRE

    B Chaitanya

    2014-01-01

    In this paper, compressed sensing (CS) of speech signal using Frame-based adaptive technique has been proposed. we propose 3 sampling strategies in a frame-based adaptive CS framework. The first stage is frame based adaptive CS framework. In this stage, each speech sequence is divided into non-overlapping frames and all frames in a speech sequence are processed independently. Second stage is Partial Sampling and Frame Analysis. This stage can estimate the amount of intensity c...

  17. A short introduction to frames, Gabor systems, and wavelet systems

    DEFF Research Database (Denmark)

    Christensen, Ole

    2014-01-01

    In this article we present a short survey of frame theory in Hilbert spaces. We discuss Gabor frames and wavelet frames, and a recent transform that allows to move results from one setting into the other and vice versa.......In this article we present a short survey of frame theory in Hilbert spaces. We discuss Gabor frames and wavelet frames, and a recent transform that allows to move results from one setting into the other and vice versa....

  18. Interruptions disrupt reading comprehension.

    Science.gov (United States)

    Foroughi, Cyrus K; Werner, Nicole E; Barragán, Daniela; Boehm-Davis, Deborah A

    2015-06-01

    Previous research suggests that being interrupted while reading a text does not disrupt the later recognition or recall of information from that text. This research is used as support for Ericsson and Kintsch's (1995) long-term working memory (LT-WM) theory, which posits that disruptions while reading (e.g., interruptions) do not impair subsequent text comprehension. However, to fully comprehend a text, individuals may need to do more than recognize or recall information that has been presented in the text at a later time. Reading comprehension often requires individuals to connect and synthesize information across a text (e.g., successfully identifying complex topics such as themes and tones) and not just make a familiarity-based decision (i.e., recognition). The goal for this study was to determine whether interruptions while reading disrupt reading comprehension when the questions assessing comprehension require participants to connect and synthesize information across the passage. In Experiment 1, interruptions disrupted reading comprehension. In Experiment 2, interruptions disrupted reading comprehension but not recognition of information from the text. In Experiment 3, the addition of a 15-s time-out prior to the interruption successfully removed these negative effects. These data suggest that the time it takes to process the information needed to successfully comprehend text when reading is greater than that required for recognition. Any interference (e.g., an interruption) that occurs during the comprehension process may disrupt reading comprehension. This evidence supports the need for transient activation of information in working memory for successful text comprehension and does not support LT-WM theory. PMID:25867225

  19. I read, you read, we read: the history of reading in Slovenia

    Directory of Open Access Journals (Sweden)

    Anja Dular

    2013-03-01

    Full Text Available ABSTRACTPurpose: The aim of the article is to research reading habits in Slovenia in the period between 16th and 19th century and to find similarities with Austria and other European countries of that time.Methodology/approach: For the purpose of the analysis different resources were used – study books, catechisms, prayer books and manuals. We were focused on introductions in which readers are advised how to read, explaining to whom the work is intended and emphasizing the importance of meditation on the texts.Results: Historically the laud reading was prefered, as to continue the folk tradition. However, the 16th century texts were transmitted by women while the folk tradition was narrated by males. In the 18th century the higher level of literacy and greater book production and availability caused that the books were not a privilege of a few. At that time more texts were intended for silent, individual reading. Interestingly, the authors emphasized the importance of meditation on the texts, too. It was also advised when to read – it wasrecommedend to read in leisure time on Sundays, and on holidays. The role of books was also to breakaway with the reality and to forget everyday problems. Due to the overproduction of books in the 17th centrury it was concerned that books are misleading the crowds. The church considered the reading of books as inappropriate, and criticized fiction, novels and adventure stories mostly read by women.Research limitation: The study is based on Slovenian texts only, although the foreign literature, especially in German, was generally available, too.Originality/practical implications: The study is fullfiling the gap in the history of reading in Slovenia.

  20. Newspaper Reading and English Teaching

    Institute of Scientific and Technical Information of China (English)

    霍丽蓉

    2014-01-01

    Reading is not only the most effective way to get the knowledge of the language but also the only way to improve the language skills of English learners. However, the vast majority of students' reading ability are far apart from the curriculum stan⁃dards in reality. Reading English newspaper helps to mobilize the enthusiasm of students' reading, and improve their reading abili⁃ty. It forms a bridge between learning and real life. It extends the English reading from the teaching materials and guides students to a lot of extracurricular reading, creating a new reading space for students.

  1. Sparse Recovery from Combined Fusion Frame Measurements

    CERN Document Server

    Boufounos, Petros T; Rauhut, Holger

    2009-01-01

    Sparse representations have emerged as a powerful tool in signal and information processing, culminated by the success of new acquisition and processing techniques such as Compressed Sensing (CS). Fusion frames are very rich new signal representation methods that use collections of subspaces instead of vectors to represent signals. This work combines these exciting fields to introduce a new sparsity model for fusion frames. Signals that are sparse under the new model can be compressively sampled and uniquely reconstructed in ways similar to sparse signals using standard CS. The combination provides a promising new set of mathematical tools and signal models useful in a variety of applications. With the new model, a sparse signal has energy in very few of the subspaces of the fusion frame, although it does not need to be sparse within each of the subspaces it occupies. This sparsity model is captured using a mixed l1/l2 norm for fusion frames. A signal sparse in a fusion frame can be sampled using very few ran...

  2. Impact of the Reading Buddies Program on Reading Level and Attitude Towards Reading

    OpenAIRE

    Hayley Dolman; Serena Boyte-Hawryluk

    2013-01-01

    Objective – This research examines the Reading Buddies program at the Grande Prairie Public Library, which took place in July and August of 2011 and 2012. The Reading Buddies program pairs lower elementary students with teen volunteers for reading practice over the summer. The aim of the study was to discover how much impact the program would have on participating children’s reading levels and attitudes towards reading.Methods – During the first and last sessions of the Reading Buddies progra...

  3. Philosophy of Teaching Reading.

    Science.gov (United States)

    Ediger, Marlow

    2003-01-01

    Lists advantages and disadvantages of statewide testing. Presents examples of highly specific objectives, as emphasized by realism as a philosophy of education. Considers the advantages idealism/perennialism, as a philosophy of instruction, has in a quality reading curriculum. (SG)

  4. Understanding Blood Pressure Readings

    Science.gov (United States)

    ... What is the AHA recommendation for healthy blood pressure? This blood pressure chart reflects categories defined by the American ... unusually low blood pressure readings. How is high blood pressure diagnosed? Your healthcare providers will want to get ...

  5. Assessment of Reading Comprehension

    Directory of Open Access Journals (Sweden)

    Madani HABIB

    2016-06-01

    Full Text Available This study attempts to shed light on the concept of assessment as an essential pedagogical practice for the improvement of the teaching-learning process. Particularly, it stresses the strategies and the techniques that should be used in assessing reading comprehension with reference to EFL classrooms. It describes the kinds of tasks that actually reveal students’ reading comprehension abilities and needs. Moreover, this paper aims to illustrate the types and the advantages of assessment for both teachers and learners. More importantly, this study tries to bring equitable evidence of how reading comprehension can be adequately assessed. The findings showed that assessment of reading comprehension is central to English language teaching as it provides teachers with essential information about students’ weaknesses, needs, obstacles, and deficits. Thus, teachers can implement the appropriate techniques and use the assessment results to amend their classroom instruction and enhance the learning abilities.

  6. Sequence Read Archive (SRA)

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome...

  7. Frame-bitrate-change based steganography for voice-over-IP

    Institute of Scientific and Technical Information of China (English)

    刘进; 田晖; 周可

    2014-01-01

    Steganography based on bits-modification of speech frames is a kind of commonly used method, which targets at RTP payloads and offers covert communications over voice-over-IP (VoIP). However, direct modification on frames is often independent of the inherent speech features, which may lead to great degradation of speech quality. A novel frame-bitrate-change based steganography is proposed in this work, which discovers a novel covert channel for VoIP and introduces less distortion. This method exploits the feature of multi-rate speech codecs that the practical bitrate of speech frame is identified only by speech decoder at receiving end. Based on this characteristic, two steganography strategies called bitrate downgrading (BD) and bitrate switching (BS) are provided. The first strategy substitutes high bit-rate speech frames with lower ones to embed secret message, which introduces very low distortion in practice, and much less than other bits-modification based methods with the same embedding capacity. The second one encodes secret message bits into different types of speech frames, which is an alternative choice for supplement. The two strategies are implemented and tested on our covert communication system StegVoIP. The experiment results show that our proposed method is effective and fulfills the real-time requirement of VoIP communication.

  8. Seismic Evaluation and Preliminary Design of Regular Setback Masonry Infilled Open Ground Storey RC Frame

    Science.gov (United States)

    Hashmi, Arshad K.

    2016-06-01

    Current seismic code presents certain stringent factors for defining frame as regular and irregular. Thereby these stringent factors only decide the type of analysis (i.e. equivalent static analysis or dynamic analysis) to be done. On the contrary, development of new simplified methods such as pushover analysis can give lateral load capacity of any structure (e.g. regular or irregular frame etc.) easily. Design by iterative procedure with the help of pushover analysis for serviceability requirement (i.e. inter storey drift limitation) provided by present seismic code, can provide an alternative to present practicing procedure. Present paper deals with regular setback frame in combination with vulnerable layout of masonry infill walls over the frame elevation (i.e. probable case of "Vertical Stiffness Irregularities"). Nonlinear time history analysis and Capacity Spectrum Method have been implemented to investigate the seismic performance of these frames. Finally, recently developed preliminary design procedure satisfying the serviceability criterion of inter storey drift limitation has been employed for the preliminary design of these frames.

  9. Empathy: from mind reading to the reading of a distant text.

    Science.gov (United States)

    Neuman, Yair

    2010-09-01

    In the psychoanalytic literature empathy is commonly discussed as a form of "mind reading", which is deeply associated with the capacity to mirror the other's mental state. In this paper, I propose an alternative perspective on empathy as the process of reading a distant text. This perspective is illustrated through a Talmudic story and by weaving a thread between Bakhtin, Bion and Lacan. The paper concludes by pointing to the danger of empathy as a hidden form of projective identification that provides the reader with a false sense of control rather than with negative capability for otherness. PMID:20221718

  10. How to read efficiently%How to read Efficiently

    Institute of Scientific and Technical Information of China (English)

    肖平

    2007-01-01

    At present, the university graduates have mountains of books to read. For this phenomenon, this paper first indicates why the students must read extensively and then tentatively suggests three measures establish new concept in reading, practise reading pragmatically, review and exchange.

  11. Reading Motivation and Reading Engagement: Clarifying Commingled Conceptions

    Science.gov (United States)

    Unrau, Norman J.; Quirk, Matthew

    2014-01-01

    The constructs of motivation for reading and reading engagement have frequently become blurred and ambiguous in both research and discussions of practice. To address this commingling of constructs, the authors provide a concise review of the literature on motivation for reading and reading engagement and illustrate the blurring of those concepts…

  12. Reading Acts: An Inquiry into Reading and Teaching

    Science.gov (United States)

    Sams, Brandon L.

    2012-01-01

    This text performs reading for teaching in an audit culture. Two teachers, myself and Steven, read the memoir "Hole in My Life" by Jack Gantos and, while reading, recorded our experiences as readers and planned to teach the book to Steven's English class. This study is an inquiry into the phenomenon of "reading to teach,"…

  13. Developing New Reading Assessments to Promote Beginning Reading in Singapore

    Science.gov (United States)

    Koh, Kim H.; Paris, Scott G.

    2011-01-01

    Effective reading instruction and intervention are rooted in effective assessments of children's developing skills in reading. The article aims to describe the development of new reading assessments to help promote beginning reading in Singapore primary schools. We begin with an introduction to the educational landscape and policies before…

  14. Reconsidering Children's Readings: Insights into the Reading Process

    Science.gov (United States)

    Arya, Poonam; Feathers, Karen M.

    2012-01-01

    This study highlights the complex reading processes of two primary grade struggling readers. It provides a more complete picture of the readers' use of all parts of a text, verbal and visual, to construct meaning during reading. The oral reading data show that students used various linguistic strategies to read words, and the eye-tracking data…

  15. Summer Reading Summer Not: How Project READS Can Advance Equity

    Science.gov (United States)

    Kim, James S.

    2010-01-01

    This paper has three goals. First, it describes the broader research on summer reading loss. Second, it discusses how research and development efforts informed the key components of Project READS (Reading Enhances Achievement During Summer), a scaffolded voluntary summer reading intervention for children in grades 3 to 5. The second part of the…

  16. Child-centered reading intervention: See, talk, dictate, read, write!

    Directory of Open Access Journals (Sweden)

    Muhammet BAŞTUĞ

    2016-06-01

    Full Text Available Poor reading achievement of children in elementary schools has been one of the major concerns in education. The aim of this study is to examine the effectiveness of a child-centered reading intervention in eliminating the reading problems of a student with poor reading achievement. The research was conducted with a student having difficulty in reading. A reading intervention was designed that targeted multiple areas of reading and aimed to improve reading skills through the use of multiple strategies. This intervention is child-centered and includes visual aids, talking, dictating, reading and writing stages. The study was performed in 35 sessions consisting of stages of a single sentence (5 sessions, two sentences (5 sessions, three sentences (20 sessions and the text stage (5 sessions. The intervention sessions were audio-taped. These recordings and the written responses to the reading comprehension questions provided the data for analysis. The findings on the reading intervention revealed positive outcomes. The student exhibited certain improvements at the levels of reading, reading rate and reading comprehension. These results were discussed in the literature and the findings suggest that child-centered reading strategies such as talking, dictating and writing should be the main focus of instruction for students with low reading literacy achievement to enable these students to meet the demands of the curriculum.

  17. STUDENTS’ READING PRACTICES AND ENVIRONMENTS

    Directory of Open Access Journals (Sweden)

    Aiza Johari

    2013-07-01

    Full Text Available Abstract: The challenges of reading are indeed apparent in most teaching and learning processes in ESL classrooms. As a result, this study is conducted to resolve the issues of students who seem to find reading to be unbearable. Many of them have limited ability to read well and hence, possess insufficient reading habits to become competent readers, particularly out-of-school context. Besides, poor home literacy environments also contribute to their shortcomings in reading. The main objectives of this study are to identify the students’ reasons for reading as well as to find out their home reading environments (reading backgrounds and habits; reading attitudes and motivation; reading exposure and supports. To identify these, questionnaires were distributed to 120 secondary school students (Form 4: 16 years old from one of the urban schools in Sarawak, Malaysia. The findings indicate that the students read to gain information and knowledge though many chose reading as a hobby as their last choice in explaining their motives of reading. Besides, they preferred non-academic reading materials, mainly lighter forms reading materials such as comics, story books and magazines. Though the students acknowledged the importance of reading in their daily lives, their average reading habits, attitude, motivation, exposure and support within the home domain had suggested otherwise. They mainly read for instrumental purposes while reading for pleasure seemed not to be given priority. Besides, the respondents acknowledge that their parents and themselves did not read much at home. As an implication, it is vital for students to improve their reading perceptions, abilities and practices to achieve personal, societal and national progress. On a final note, parents’ early and continuous efforts to be involved in their children’s literacy events in an out-of-school context are believed to be vital to inculcate positive reading environments, habits and culture

  18. On Λ-Type Duality of Frames in Banach Spaces

    Directory of Open Access Journals (Sweden)

    Renu Chugh

    2013-11-01

    Full Text Available Frames are redundant system which are useful in the reconstruction of certain classes of spaces. The dual of a frame (Hilbert always exists and can be obtained in a natural way. Due to the presence of three Banach spaces in the definition of retro Banach frames (or Banach frames duality of frames in Banach spaces is not similar to frames for Hilbert spaces. In this paper we introduce the notion of Λ-type duality of retro Banach frames. This can be generalized to Banach frames in Banach spaces. Necessary and sufficient conditions for the existence of the dual of retro Banach frames are obtained. A special class of retro Banach frames which always admit a dual frame is discussed.

  19. Assessment of Reading Comprehension

    OpenAIRE

    Madani HABIB

    2016-01-01

    This study attempts to shed light on the concept of assessment as an essential pedagogical practice for the improvement of the teaching-learning process. Particularly, it stresses the strategies and the techniques that should be used in assessing reading comprehension with reference to EFL classrooms. It describes the kinds of tasks that actually reveal students’ reading comprehension abilities and needs. Moreover, this paper aims to illustrate the types and the advantages of assessment for b...

  20. Reading Knee-Deep

    Science.gov (United States)

    Jewett, Pamela

    2007-01-01

    Freire told his audience at a seminar at the University of Massachusetts, "You need to read knee-deep in texts, for deeper than surface meanings, and you need to know the words to be able to do it" (quoted in Cleary, 2003). In a children's literature class, fifteen teachers and I traveled along a path that moved us toward reading knee-deep as we…

  1. Reading Text While Driving

    OpenAIRE

    Liang, Yulan; Horrey, William J.; Hoffman, Joshua D.

    2015-01-01

    Objective In this study, we investigated how drivers adapt secondary-task initiation and time-sharing behavior when faced with fluctuating driving demands. Background Reading text while driving is particularly detrimental; however, in real-world driving, drivers actively decide when to perform the task. Method In a test track experiment, participants were free to decide when to read messages while driving along a straight road consisting of an area with increased driving demands (demand zone)...

  2. Metacognition in Reading Comprehension

    OpenAIRE

    Ceylan, Eda; Harputlu, Leyla

    2015-01-01

    Metacognition is defined basically as thinking about thinking. It is a significant factor that affects many activities related to language use. Reading comprehension, which is an indispensable part of daily life and language classrooms, is affected by metacognition, too. Hence, this paper aims to present an overview of the recent theoretical and empirical studies about metacognition and reading comprehension. Firstly, it provides the definitions and the importance of metacognition. Secondly, ...

  3. Classification of Framed Links in 3-Manifolds

    Indian Academy of Sciences (India)

    Matija Cencelj; Dušan Repovš; Mikhail B Skopenkov

    2007-08-01

    We present a short and complete proof of the following Pontryagin theorem, whose original proof was complicated and has never been published in detail. Let be a connected oriented closed smooth 3-manifold, $L_1(M)$ be the set of framed links in up to a framed cobordism, and $\\deg: L_1(M)→ H_1(M;\\mathbb{Z})$ be the map taking a framed link to its homology class. Then for each $\\in H_1(M;\\mathbb{Z})$ there is a one-to-one correspondence between the set $\\deg^{-1}$ and the group $\\mathbb{Z}_{2d()}$, where () is the divisibility of the projection of to the free part of $H_1(M;\\mathbb{Z})$.

  4. Supporting Product Line Evolution with Framed Aspects

    DEFF Research Database (Denmark)

    Loughran, Neil; Rashid, Awais; Zhang, Weishan;

    2004-01-01

    This paper discusses how evolution in software product lines can be supported using framed aspects: a combination of aspect-oriented programming and frame technology. Product line architectures and assets are subject to maintenance and evolution throughout their lifetime due to the emergence of new...... user requirements, new technologies, business rules and features. However, the evolution process can be compromised by inadequate mechanisms for expressing the required changes. It maybe possible to anticipate future evolutions and, therefore, prepare and design the architecture to accommodate this...... of both technologies in combination. The amalgamation of framing and aspect-oriented techniques can help in the integration of new features and thus reduce the risk of architectural erosion....

  5. Frame Complexity and the Financial Crisis

    DEFF Research Database (Denmark)

    Kleinnijenhuis, Jan; Schultz, Friederike; Oegema, Dirk

    2015-01-01

    Communicative complexity concerns the variety of issues and stakeholders (agenda complexity) and their associations (frame complexity) in the news. One issue may dominate news in crises (9/11, Katrina), but as soon as complexity recovers, uncertainty may decrease and the public mood may improve....... The financial crisis in the United States, the United Kingdom, and Germany (2007–2012) offers an example. An automated content analysis was applied to over 160,000 newspaper articles. Frame complexity decreased until the spotlight fell on the demise of Bear Stearns and Lehman Brothers (2008). The subsequent...... gradual recovery was only partly interrupted by the euro crisis. A Vector AutoRegression time series analysis shows that increasing frame complexity may indeed have fostered the recovery of financial markets and consumer confidence....

  6. Quantum hydrodynamics in the rotating reference frame

    CERN Document Server

    Trukhanova, Mariya Iv

    2016-01-01

    In this paper we apply quantum hydrodynamics (QHD) to study the quantum evolution of a system of spinning particles and particles that have the electric dipole moments EDM in the rotating reference frame. The method presented is based on the many-particle microscopic Schrodinger equation in the rotating reference frame. Fundamental QHD equations for charged or neutral spinning and EDM-bearing particles were shaped due to this method and contain the spin-dependent inertial force field. The polarization dynamics in systems of neutral particles in the rotating frame is shown to cause formation of a new type of waves, the dipole-inertial waves. We have analyzed elementary excitations in a system of neutral polarized fluids placed into an external electric field in 2D and 3D cases. We predict the novel type of 2D dipole-inertial wave and 3D - polarization wave modified by rotation in systems of particles with dipole-dipole interactions.

  7. Member end releases in framed structures

    Science.gov (United States)

    Stallings, J. M.

    1993-02-01

    Discontinuities such as internal hinges are commonly encountered in framed structures. A general method of including discontinuities in stiffness method analyses of planar frames by the release of member end forces is developed. Modifications are made to the member stiffness matrix and equivalent joint load vector to account for the released end forces. A FORTRAN algorithm is given that makes the necessary modifications to the member stiffness matrix and equivalent joint load vector for the standard planar frame member. The algorithm allows combinations of up to three member end forces to be released (specified at zero or nonzero values). An algorithm is also given that calculates the unknown member end displacements at the released member end forces. Numerical examples are given to illustrate the uses and capabilities of the algorithms.

  8. Connecting VLBI and Gaia celestial reference frames

    CERN Document Server

    Malkin, Zinovy

    2016-01-01

    The current state of the link problem between radio and optical celestial reference frames is considered. The main objectives of the investigations in this direction during the next few years are the preparation of a comparison and the mutual orientation and rotation between the optical {\\it Gaia} Celestial Reference Frame (GCRF) and the 3rd generation radio International Celestial Reference Frame (ICRF3), obtained from VLBI observations. Both systems, ideally, should be a realization of the ICRS (International Celestial Reference System) at micro-arcsecond level accuracy. Therefore, the link accuracy between the ICRF and GCRF should be obtained with similar error level, which is not a trivial task due to relatively large systematic and random errors in source positions at different frequency bands. In this paper, a brief overview of recent work on the GCRF--ICRF link is presented. Additional possibilities to improve the GCRF--ICRF link accuracy are discussed. The suggestion is made to use astrometric radio s...

  9. Sparse Signal Processing with Frame Theory

    CERN Document Server

    Mixon, Dustin G

    2012-01-01

    Many emerging applications involve sparse signals, and their processing is a subject of active research. We desire a large class of sensing matrices which allow the user to discern important properties of the measured sparse signal. Of particular interest are matrices with the restricted isometry property (RIP). RIP matrices are known to enable efficient and stable reconstruction of sufficiently sparse signals, but the deterministic construction of such matrices has proven very difficult. In this thesis, we discuss this matrix design problem in the context of a growing field of study known as frame theory. In the first two chapters, we build large families of equiangular tight frames and full spark frames, and we discuss their relationship to RIP matrices as well as their utility in other aspects of sparse signal processing. In Chapter 3, we pave the road to deterministic RIP matrices, evaluating various techniques to demonstrate RIP, and making interesting connections with graph theory and number theory. We ...

  10. Extension of shift-invariant systems in L2(ℝ) to frames

    DEFF Research Database (Denmark)

    Bownik, Marcin; Christensen, Ole; Huang, Xinli;

    2012-01-01

    In this article, we show that any shift-invariant Bessel sequence with an at most countable number of generators can be extended to a tight frame for its closed linear span by adding another shift-invariant system with at most the same number of generators. We show that in general this result is...... optimal, by providing examples where it is impossible to obtain a tight frame by adding a smaller number of generators. An alternative construction (which avoids the technical complication of extracting the square root of a positive operator) yields an extension of the given Bessel sequence to a pair of...

  11. News framing and public opinion: A mediation analysis of framing effects on political attitudes

    NARCIS (Netherlands)

    S.K. Lecheler; C.H. de Vreese

    2012-01-01

    There is no satisfactory account of the psychological processes that mediate a news framing effect. Based on an experimental study (N = 1,537), this article presents a mediation analysis of a news framing effect on opinion, testing for two important mediation processes: belief importance and belief

  12. BioFrameNet: A FrameNet Extension to the Domain of Molecular Biology

    Science.gov (United States)

    Dolbey, Andrew Eric

    2009-01-01

    In this study I introduce BioFrameNet, an extension of the Berkeley FrameNet lexical database to the domain of molecular biology. I examine the syntactic and semantic combinatorial possibilities exhibited in the lexical items used in this domain in order to get a better understanding of the grammatical properties of the language used in scientific…

  13. All framing effects are not created equal: Low convergent validity between two classic measurements of framing.

    Science.gov (United States)

    Zhen, Shanshan; Yu, Rongjun

    2016-01-01

    Human risk-taking attitudes can be influenced by two logically equivalent but descriptively different frames, termed the framing effect. The classic hypothetical vignette-based task (Asian disease problem) and a recently developed reward-based gambling task have been widely used to assess individual differences in the framing effect. Previous studies treat framing bias as a stable trait that has genetic basis. However, these two paradigms differ in terms of task domain (loss vs. gain) and task context (vignette-based vs. reward-based) and the convergent validity of these measurements remains unknown. Here, we developed a vignette-based task and a gambling task in both gain and loss domains and tested correlations of the framing effect among these tasks in 159 young adults. Our results revealed no significant correlation between the vignette-based task in the loss domain and the gambling task in the gain domain, indicating low convergent validity. The current findings raise the question of how to measure the framing effect precisely, especially in individual difference studies using large samples and expensive neuroscience methods. Our results suggest that the framing effect is influenced by both task domain and task context and future research should be cautious about the operationalization of the framing effect. PMID:27436680

  14. Mappability and Read Length

    Directory of Open Access Journals (Sweden)

    Wentian eLi

    2014-11-01

    Full Text Available Power-law distributions are the main functional form forthe distribution of repeat size and repeat copy number in the human genome. When the genome is broken into fragments for sequencing, the limited size offragments and reads may prevent an unique alignment of repeatsequences to the reference sequence. Repeats in the human genome canbe as long as $10^4$ bases, or $10^5-10^6$ bases when allowing for mismatches between repeat units. Sequence reads from these regions are therefore unmappable when the read length is in the range of $10^3$ bases.With the read length of exactly 1000 bases, slightly more than 1% of theassembled genome, and slightly less than 1% of the 1kbreads, are unmappable, excluding the unassembled portion of the humangenome (8% in GRCh37. The slow decay (long tail ofthe power-law function implies a diminishing return in convertingunmappable regions/reads to become mappable with the increase of theread length, with the understanding that increasing read length willalways move towards the direction of 100% mappability.

  15. Research on Intelligent Control of Roving Frame

    Institute of Scientific and Technical Information of China (English)

    王有庆; 李从心; 王占杭

    2003-01-01

    A new model of roving frame FA467,which uses four frequency inverters to replace the complex mechanical transmission,is discussed.A Neuron-PID is designed to reduce the effect of various parametric variations such as load inertia.To ensure the constant spinning tension all over the spinning process,a feedforward controller using iterative learning control algorithm is designed to avoid disturbances caused by changes of temperature,humidity and so on.The simulation result is shown to illustrate the effectiveness of the proposed algorithm,and now the roving frame FA467 has been developed successfully.

  16. Open quantum systems in noninertial frames

    Energy Technology Data Exchange (ETDEWEB)

    Khan, Salman; Khan, M K, E-mail: sksafi@phys.qau.edu.pk [Department of Physics, Quaid-i-Azam University, Islamabad 45320 (Pakistan)

    2011-01-28

    We study the effects of decoherence on the entanglement generated by the Unruh effect in noninertial frames by using phase flip, phase damping and depolarizing channels. It is shown that decoherence strongly influences the initial state entanglement. Entanglement sudden death can occur irrespective of the acceleration of the noninertial frame under the action of phase flip and phase damping channels. It is investigated that an early sudden death occurs for large acceleration under the depolarizing environment. Moreover, entanglement increases for a highly decohered phase flip channel.

  17. Open Quantum Systems in Noninertial Frames

    CERN Document Server

    Khan, Salman

    2010-01-01

    We study the effects of decoherence on the entanglement generated by Unruh effect in noninertial frames by using bit flip, phase damping and depolarizing channels. It is shown that decoherence strongly influences the initial state entanglement. The entanglement sudden death can happens irrespective of the acceleration of the noninertial frame under the action of phase flip and phase damping channels. It is investigated that an early sudden death happens for large acceleration under the depolarizing environment. Moreover, the entanglement increases for a highly decohered phase flip channel.

  18. Apparatus for removably attaching a core frame to a vane frame with a stable mid ring

    Energy Technology Data Exchange (ETDEWEB)

    Antuna, E.J.; Keck, D.F.; Roth, R.H.; Brantley, J.W.; Wakeman, T.G.; Fravel, J.B.; Corbeil, A.B.; Strock, W.J.

    1993-06-29

    In a gas turbine engine having a core frame separable from a vane frame for removably attaching the vane frame to a core structure through a mid ring attachment, an improved mid ring is described comprising: an annular forward panel and an annular aft panel, each of the panels having a radially outer flange and a radially inner flange, the inner flanges being welded to the core frame and the outer flanges being bolted to the vane frame; and a plurality of circumferentially spaced stiffeners extending between the forward panel and the aft panel, each of the stiffeners comprising a first stringer extending diagonally from the radially inner flange of the forward panel to the radially outer flange of the aft panel and a second stringer extending diagonally from the radially inner flange of the aft panel to the radially outer flange of the forward panel.

  19. Time delay control of power converters: Mixed frame and stationary-frame variants

    DEFF Research Database (Denmark)

    Blaabjerg, Frede; Loh, P.C.; Tang, Y.;

    2008-01-01

    In this paper, a mixed-frame and a stationary-frame time delay current controller are proposed for high precision reference tracking and disturbance rejection of power converters. In particular, the controllers use a proportional-resonant regulator in the stationary frame for regulating...... the positive and negative-sequence fundamental currents, which are known to directly influence the flow of active and reactive power in most energy conversion systems. Moreover, for the tracking or compensation of harmonics, the controllers include a time delay control path in either the synchronous...... or stationary frame, whose inherent feedback and feedforward structure can be proven to resemble a bank of resonant filters in either reference frames. Unlike other existing controllers, the proposed time delay controllers function by introducing multiple resonant peaks at only those harmonic frequencies...

  20. Reading Attitudes as a Predictor of Latino Adolescents' Reading Comprehension

    OpenAIRE

    Crosby, Robert

    2013-01-01

    Although literacy skills have been associated with critical academic, social, and economic outcomes, most adolescents in the United States lack basic proficiency in reading comprehension. Experts in the field of adolescent literacy have identified affective components of reading (e.g., reading attitudes) as a critical topic in need of further research. Prior research has found a significant correlation between affective components of reading and reading comprehension, even after controlling...

  1. Merge Frame Design for Video Stream Switching Using Piecewise Constant Functions.

    Science.gov (United States)

    Dai, Wei; Cheung, Gene; Cheung, Ngai-Man; Ortega, Antonio; Au, Oscar C

    2016-08-01

    The ability to efficiently switch from one pre-encoded video stream to another (e.g., for bitrate adaptation or view switching) is important for many interactive streaming applications. Recently, stream-switching mechanisms based on distributed source coding (DSC) have been proposed. In order to reduce the overall transmission rate, these approaches provide a merge mechanism, where information is sent to the decoder, such that the exact same frame can be reconstructed given that any one of a known set of side information (SI) frames is available at the decoder (e.g., each SI frame may correspond to a different stream from which we are switching). However, the use of bit-plane coding and channel coding in many DSC approaches leads to complex coding and decoding. In this paper, we propose an alternative approach for merging multiple SI frames, using a piecewise constant (PWC) function as the merge operator. In our approach, for each block to be reconstructed, a series of parameters of these PWC merge functions are transmitted in order to guarantee identical reconstruction given the known SI blocks. We consider two different scenarios. In the first case, a target frame is first given, and then merge parameters are chosen, so that this frame can be reconstructed exactly at the decoder. In contrast, in the second scenario, the reconstructed frame and the merge parameters are jointly optimized to meet a rate-distortion criteria. Experiments show that for both scenarios, our proposed merge techniques can outperform both a recent approach based on DSC and the SP-frame approach in H.264, in terms of compression efficiency and decoder complexity. PMID:27244739

  2. Merge Frame Design for Video Stream Switching Using Piecewise Constant Functions

    Science.gov (United States)

    Dai, Wei; Cheung, Gene; Cheung, Ngai-Man; Ortega, Antonio; Au, Oscar C.

    2016-08-01

    The ability to efficiently switch from one pre-encoded video stream to another (e.g., for bitrate adaptation or view switching) is important for many interactive streaming applications. Recently, stream-switching mechanisms based on distributed source coding (DSC) have been proposed. In order to reduce the overall transmission rate, these approaches provide a "merge" mechanism, where information is sent to the decoder such that the exact same frame can be reconstructed given that any one of a known set of side information (SI) frames is available at the decoder (e.g., each SI frame may correspond to a different stream from which we are switching). However, the use of bit-plane coding and channel coding in many DSC approaches leads to complex coding and decoding. In this paper, we propose an alternative approach for merging multiple SI frames, using a piecewise constant (PWC) function as the merge operator. In our approach, for each block to be reconstructed, a series of parameters of these PWC merge functions are transmitted in order to guarantee identical reconstruction given the known side information blocks. We consider two different scenarios. In the first case, a target frame is first given, and then merge parameters are chosen so that this frame can be reconstructed exactly at the decoder. In contrast, in the second scenario, the reconstructed frame and merge parameters are jointly optimized to meet a rate-distortion criteria. Experiments show that for both scenarios, our proposed merge techniques can outperform both a recent approach based on DSC and the SP-frame approach in H.264, in terms of compression efficiency and decoder complexity.

  3. Alternative Splice in Alternative Lice.

    Science.gov (United States)

    Tovar-Corona, Jaime M; Castillo-Morales, Atahualpa; Chen, Lu; Olds, Brett P; Clark, John M; Reynolds, Stuart E; Pittendrigh, Barry R; Feil, Edward J; Urrutia, Araxi O

    2015-10-01

    Genomic and transcriptomics analyses have revealed human head and body lice to be almost genetically identical; although con-specific, they nevertheless occupy distinct ecological niches and have differing feeding patterns. Most importantly, while head lice are not known to be vector competent, body lice can transmit three serious bacterial diseases; epidemictyphus, trench fever, and relapsing fever. In order to gain insights into the molecular bases for these differences, we analyzed alternative splicing (AS) using next-generation sequencing data for one strain of head lice and one strain of body lice. We identified a total of 3,598 AS events which were head or body lice specific. Exon skipping AS events were overrepresented among both head and body lice, whereas intron retention events were underrepresented in both. However, both the enrichment of exon skipping and the underrepresentation of intron retention are significantly stronger in body lice compared with head lice. Genes containing body louse-specific AS events were found to be significantly enriched for functions associated with development of the nervous system, salivary gland, trachea, and ovarian follicle cells, as well as regulation of transcription. In contrast, no functional categories were overrepresented among genes with head louse-specific AS events. Together, our results constitute the first evidence for transcript pool differences in head and body lice, providing insights into molecular adaptations that enabled human lice to adapt to clothing, and representing a powerful illustration of the pivotal role AS can play in functional adaptation. PMID:26169943

  4. DBI Galileons in the Einstein Frame: Local Gravity and Cosmology

    CERN Document Server

    Zumalacarregui, Miguel; Mota, David F

    2012-01-01

    It is shown that a disformally coupled theory in which the gravitational sector has the Einstein-Hilbert form is equivalent to a particular DBI Galileon Lagrangian, possesing non-linear higher derivative interactions, and hence allowing for the Vainshtein effect. This Einstein frame description considerably simplifies the dynamical equations. The study of highly dense, non-relativistic environments within this description unravels the existence of a disformal screening mechanism, which represents an alternative way to investigate the Vainshtein mechanism. Disformal couplings to matter also allow the construction of Dark Energy models, which behave differently than conformally coupled ones and introduce new effects on the growth of Large Scale Structure over cosmological scales, on which the scalar force is not screened. We consider a simple Disformally Coupled Dark Matter model in detail, in which standard model particles follow geodesics of the gravitational metric and only Dark Matter is affected by the dis...

  5. When Do Children Read Books?

    Science.gov (United States)

    van Ours, Jan C.

    2008-01-01

    This paper investigates the reading of fiction books by 15 year olds in 18 OECD countries. It appears that girls read fiction books more often than boys, whereas boys read comic books more often than girls. Parental education, family structure, and the number of books and televisions at home influence the intensity with which children read fiction…

  6. How to Improve Reading Speed

    Institute of Scientific and Technical Information of China (English)

    王仲亮

    2008-01-01

    @@ It is well known that reading plays an important role not only in our daily life but also in learning a foreign language.And,of course,reading depends on reading speed to some degree.So it is natural that it is important to improve reading speed.

  7. What Is a Reading Error?

    Science.gov (United States)

    Labov, William; Baker, Bettina

    2010-01-01

    Early efforts to apply knowledge of dialect differences to reading stressed the importance of the distinction between differences in pronunciation and mistakes in reading. This study develops a method of estimating the probability that a given oral reading that deviates from the text is a true reading error by observing the semantic impact of the…

  8. Explorations in Second Language Reading

    Science.gov (United States)

    Cohen, Roger, Ed.

    2009-01-01

    The chapters in "Explorations in Second Language Reading" reveal the importance of reading in the classroom and how instructors can use reading as a bridge to improve learners' other linguistic and interpersonal skills. Most significantly, each author prompts us to rediscover how enjoyable ESOL reading can be and how it can increase learner…

  9. Literature in the Reading Curriculum.

    Science.gov (United States)

    Johnson, Nancy J.; Giorgis, Cyndi

    2003-01-01

    Presents annotations of 32 works of children's literature that invite consideration of the wondrous possibilities of literature in the reading curriculum--from reading aloud to time set aside for independent reading, from focused instruction using paired and shared reading to engagement through book discussions, and from using literature to learn…

  10. Peer Tutors Improve Reading Comprehension

    Science.gov (United States)

    LaGue, Kristina M.; Wilson, Katrina

    2011-01-01

    The influential report "Teaching Children to Read: An Evidenced-Based Assessment of the Scientific Research Literature on Reading and Its Implications for Reading Instruction," published by the National Reading Panel in 2000, presented recommendations for daily literacy instruction in five key areas: phonemic awareness, phonics, fluency,…

  11. Early Reading and Concrete Operations.

    Science.gov (United States)

    Polk, Cindy L. Howes; Goldstein, David

    1980-01-01

    Indicated that early readers are more likely to be advanced in cognitive development than are nonearly-reading peers. After one year of formal reading instruction, early readers maintained their advantage in reading achievement. Measures of concrete operations were found to predict reading achievement for early and nonearly readers. (Author/DB)

  12. Paired Reading: Psycholinguistics in Practice.

    Science.gov (United States)

    Barrett, James Martin

    1987-01-01

    Contends that children need to learn phonic skills, not necessarily through early direct teaching, but through reading experience. Suggests using Paired Reading, which is validated by psycholinguistic reading theory and provides opportunities to learn to read from context and use innate syntactic and semantic knowledge. (SKC)

  13. The Many Fibers of Reading

    Science.gov (United States)

    Leloup, Dennis

    2009-01-01

    How can library media specialists encourage kids to read outside the curriculum and maintain this reading beyond elementary school? What does it take to get children involved in recreational reading and turn their focus to books? At Sycamore Elementary School in Avon, Indiana, library media specialists have organized reading programs which have…

  14. Obstacles to Effective Fast Reading

    Institute of Scientific and Technical Information of China (English)

    赵振国

    2016-01-01

    Reading is a visual as well as a mental understanding process. Reading process can be divided into visual input process and mental understanding information process. Based on experts’ researches and theories, the author has analyzed the two reading processes and discover the main factors influencing the Chinese English learners’ reading rate are visual input with low speed and understanding information with low efficiency.

  15. Effects of Peer Mediated Instruction on the Oral Reading Fluency Skills of High School Aged Struggling Readers

    Science.gov (United States)

    Josephs, Nikki L.; Jolivette, Kristine

    2016-01-01

    This study examined the effects of peer-mediated oral reading fluency instruction and narrative texts on the reading fluency and comprehension skills of adolescent struggling readers in an alternative high school setting over a period of 10 weeks. The results of this study indicate that peer-mediated repeated reading appears to be the most…

  16. Normative, gain and hedonic goal frames guiding environmental behavior

    NARCIS (Netherlands)

    Lindenberg, Siegwart; Steg, Linda

    2007-01-01

    This article discusses new developments about goal-dependent framing and multiple goal frames (sometimes also called "multiple motives"), which are highly relevant for understanding environmental behavior. We introduce goal-framing theory, which postulates that goals "frame" the way people process i

  17. Some equalities and inequalities of g-continuous frames

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    In this paper,we derive some equalities and inequalities about g-continuous frames,which are an extension to g-frames and continuous frames.We also discuss the stability of the perturbation of a g-continuous frame.

  18. Remarks on Viewing Situation in a Rotating Frame

    Science.gov (United States)

    Kobayashi, Yukio

    2008-01-01

    Representations of centrifugal forces are derived in a variety of rotating frames. Although the rotating angle of a point mass relative to an inertial frame is often confused with the rotating angle of a rotating frame relative to the inertial frame, they should be differentiated. (Contains 4 figures and 1 table.)

  19. Looking for an Alternative.

    Science.gov (United States)

    Kennedy, Jack

    1999-01-01

    Argues that high school newspapers might do well to create stronger ties with alternative weeklies. Discusses issues of niche marketing, alternative content, and alternative presentation. Notes that high school papers could learn a lot from alternative newspapers. (SR)

  20. Infinite matrices, wavelet coefficients and frames

    Directory of Open Access Journals (Sweden)

    N. A. Sheikh

    2004-01-01

    Full Text Available We study the action of A on f∈L2(ℝ and on its wavelet coefficients, where A=(almjklmjk is a double infinite matrix. We find the frame condition for A-transform of f∈L2(ℝ whose wavelet series expansion is known.