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Sample records for altering root system

  1. Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system.

    Science.gov (United States)

    López-Bucio, José; Hernández-Abreu, Esmeralda; Sánchez-Calderón, Lenin; Nieto-Jacobo, María Fernanda; Simpson, June; Herrera-Estrella, Luis

    2002-05-01

    The postembryonic developmental program of the plant root system is plastic and allows changes in root architecture to adapt to environmental conditions such as water and nutrient availability. Among essential nutrients, phosphorus (P) often limits plant productivity because of its low mobility in soil. Therefore, the architecture of the root system may determine the capacity of the plant to acquire this nutrient. We studied the effect of P availability on the development of the root system in Arabidopsis. We found that at P-limiting conditions (increase in auxin sensitivity in the roots of P-deprived Arabidopsis seedlings. It was also found that the axr1-3, axr2-1, and axr4-1 Arabidopsis mutants have normal responses to low P availability conditions, whereas the iaa28-1 mutant shows resistance to the stimulatory effects of low P on root hair and lateral root formation. Analysis of ethylene signaling mutants and treatments with 1-aminocyclopropane-1-carboxylic acid showed that ethylene does not promote lateral root formation under P deprivation. These results suggest that in Arabidopsis, auxin sensitivity may play a fundamental role in the modifications of root architecture by P availability. PMID:12011355

  2. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.

    Science.gov (United States)

    Martínez-Trujillo, Miguel; Méndez-Bravo, Alfonso; Ortiz-Castro, Randy; Hernández-Madrigal, Fátima; Ibarra-Laclette, Enrique; Ruiz-Herrera, León Francisco; Long, Terri A; Cervantes, Carlos; Herrera-Estrella, Luis; López-Bucio, José

    2014-09-01

    Soil contamination by hexavalent chromium [Cr(VI) or chromate] due to anthropogenic activities has become an increasingly important environmental problem. To date few studies have been performed to elucidate the signaling networks involved on adaptive responses to (CrVI) toxicity in plants. In this work, we report that depending upon its concentration, Cr(VI) alters in different ways the architecture of the root system in Arabidopsis thaliana seedlings. Low concentrations of Cr (20-40 µM) promoted primary root growth, while concentrations higher than 60 µM Cr repressed growth and increased formation of root hairs, lateral root primordia and adventitious roots. We analyzed global gene expression changes in seedlings grown in media supplied with 20 or 140 µM Cr. The level of 731 transcripts was significantly modified in response to Cr treatment with only five genes common to both Cr concentrations. Interestingly, 23 genes related to iron (Fe) acquisition were up-regulated including IRT1, YSL2, FRO5, BHLH100, BHLH101 and BHLH039 and the master controllers of Fe deficiency responses PYE and BTS were specifically activated in pericycle cells. It was also found that increasing concentration of Cr in the plant correlated with a decrease in Fe content, but increased both acidification of the rhizosphere and activity of the ferric chelate reductase. Supply of Fe to Cr-treated Arabidopsis allowed primary root to resume growth and alleviated toxicity symptoms, indicating that Fe nutrition is a major target of Cr stress in plants. Our results show that low Cr levels are beneficial to plants and that toxic Cr concentrations activate a low-Fe rescue system. PMID:24928490

  3. Mycorrhiza alters the profile of root hairs in trifoliate orange.

    Science.gov (United States)

    Wu, Qiang-Sheng; Liu, Chun-Yan; Zhang, De-Jian; Zou, Ying-Ning; He, Xin-Hua; Wu, Qing-Hua

    2016-04-01

    Root hairs and arbuscular mycorrhiza (AM) coexist in root systems for nutrient and water absorption, but the relation between AM and root hairs is poorly known. A pot study was performed to evaluate the effects of four different AM fungi (AMF), namely, Claroideoglomus etunicatum, Diversispora versiformis, Funneliformis mosseae, and Rhizophagus intraradices on root hair development in trifoliate orange (Poncirus trifoliata) seedlings grown in sand. Mycorrhizal seedlings showed significantly higher root hair density than non-mycorrhizal seedlings, irrespective of AMF species. AMF inoculation generally significantly decreased root hair length in the first- and second-order lateral roots but increased it in the third- and fourth-order lateral roots. AMF colonization induced diverse responses in root hair diameter of different order lateral roots. Considerably greater concentrations of phosphorus (P), nitric oxide (NO), glucose, sucrose, indole-3-acetic acid (IAA), and methyl jasmonate (MeJA) were found in roots of AM seedlings than in non-AM seedlings. Levels of P, NO, carbohydrates, IAA, and MeJA in roots were correlated with AM formation and root hair development. These results suggest that AMF could alter the profile of root hairs in trifoliate orange through modulation of physiological activities. F. mosseae, which had the greatest positive effects, could represent an efficient AM fungus for increasing fruit yields or decreasing fertilizer inputs in citrus production. PMID:26499883

  4. Automated Root Tracking with "Root System Analyzer"

    Science.gov (United States)

    Schnepf, Andrea; Jin, Meina; Ockert, Charlotte; Bol, Roland; Leitner, Daniel

    2015-04-01

    Crucial factors for plant development are water and nutrient availability in soils. Thus, root architecture is a main aspect of plant productivity and needs to be accurately considered when describing root processes. Images of root architecture contain a huge amount of information, and image analysis helps to recover parameters describing certain root architectural and morphological traits. The majority of imaging systems for root systems are designed for two-dimensional images, such as RootReader2, GiA Roots, SmartRoot, EZ-Rhizo, and Growscreen, but most of them are semi-automated and involve mouse-clicks in each root by the user. "Root System Analyzer" is a new, fully automated approach for recovering root architectural parameters from two-dimensional images of root systems. Individual roots can still be corrected manually in a user interface if required. The algorithm starts with a sequence of segmented two-dimensional images showing the dynamic development of a root system. For each image, morphological operators are used for skeletonization. Based on this, a graph representation of the root system is created. A dynamic root architecture model helps to determine which edges of the graph belong to an individual root. The algorithm elongates each root at the root tip and simulates growth confined within the already existing graph representation. The increment of root elongation is calculated assuming constant growth. For each root, the algorithm finds all possible paths and elongates the root in the direction of the optimal path. In this way, each edge of the graph is assigned to one or more coherent roots. Image sequences of root systems are handled in such a way that the previous image is used as a starting point for the current image. The algorithm is implemented in a set of Matlab m-files. Output of Root System Analyzer is a data structure that includes for each root an identification number, the branching order, the time of emergence, the parent

  5. 2,4-diacetylphloroglucinol alters plant root development.

    Science.gov (United States)

    Brazelton, Jessica N; Pfeufer, Emily E; Sweat, Teresa A; Gardener, Brian B McSpadden; Coenen, Catharina

    2008-10-01

    Pseudomonas fluorescens isolates containing the phlD gene can protect crops from root pathogens, at least in part through production of the antibiotic 2,4-diacetylphloroglucinol (DAPG). However, the action mechanisms of DAPG are not fully understood, and effects of this antibiotic on host root systems have not been characterized in detail. DAPG inhibited primary root growth and stimulated lateral root production in tomato seedlings. Roots of the auxin-resistant diageotropica mutant of tomato demonstrated reduced DAPG sensitivity with regards to inhibition of primary root growth and induction of root branching. Additionally, applications of exogenous DAPG, at concentrations previously found in the rhizosphere of plants inoculated with DAPG-producing pseudomonads, inhibited the activation of an auxin-inducible GH3 promoter::luciferase reporter gene construct in transgenic tobacco hypocotyls. In this model system, supernatants of 17 phlD+ P. fluorescens isolates had inhibitory effects on luciferase activity similar to synthetic DAPG. In addition, a phlD() mutant strain, unable to produce DAPG, demonstrated delayed inhibitory effects compared with the parent wild-type strain. These results indicate that DAPG can alter crop root architecture by interacting with an auxin-dependent signaling pathway. PMID:18785830

  6. AM symbiosis alters phenolic acid content in tomato roots

    OpenAIRE

    López-Ráez, Juan A.; Flors, Victor; García, Juan M.; Pozo, Maria J.

    2010-01-01

    Arbuscular mycorrhizal (AM) fungi colonize the roots of most plants to establish a mutualistic symbiosis leading to important benefits for plant health. We have recently shown that AM symbiosis alters both transcriptional and hormonal profiles in tomato roots, many of these changes related to plant defense. Here, we analytically demonstrate that the levels of other important defense-related compounds as phenolic acids are also altered in the symbiosis. Both caffeic and chlorogenic acid levels...

  7. The presence of nodules on legume root systems can alter phenotypic plasticity in response to internal nitrogen independent of nitrogen fixation.

    Science.gov (United States)

    Goh, Chooi-Hua; Nicotra, Adrienne B; Mathesius, Ulrike

    2016-04-01

    All higher plants show developmental plasticity in response to the availability of nitrogen (N) in the soil. In legumes, N starvation causes the formation of root nodules, where symbiotic rhizobacteria fix atmospheric N2 for the host in exchange for fixed carbon (C) from the shoot. Here, we tested whether plastic responses to internal [N] of legumes are altered by their symbionts. Glasshouse experiments compared root phenotypes of three legumes, Medicago truncatula, Medicago sativa and Trifolium subterraneum, inoculated with their compatible symbiont partners and grown under four nitrate levels. In addition, six strains of rhizobia, differing in their ability to fix N2 in M. truncatula, were compared to test if plastic responses to internal [N] were dependent on the rhizobia or N2 -fixing capability of the nodules. We found that the presence of rhizobia affected phenotypic plasticity of the legumes to internal [N], particularly in root length and root mass ratio (RMR), in a plant species-dependent way. While root length responses of M. truncatula to internal [N] were dependent on the ability of rhizobial symbionts to fix N2 , RMR response to internal [N] was dependent only on initiation of nodules, irrespective of N2 -fixing ability of the rhizobia strains. PMID:26523414

  8. Graviresponsiveness of surgically altered primary roots of Zea mays

    Science.gov (United States)

    Maimon, E.; Moore, R.

    1991-01-01

    We examined the gravitropic responses of surgically altered primary roots of Zea mays to determine the route by which gravitropic inhibitors move from the root tip to the elongating zone. Horizontally oriented roots, from which a 1-mm-wide girdle of epidermis plus 2-10 layers of cortex were removed from the apex of the elongating zone, curve downward. However, curvature occurred only apical to the girdle. Filling the girdle with mucilage-like material transmits curvature beyond the girdle. Vertically oriented roots with a half-girdle' (i.e. the epidermis and 2-10 layers of the cortex removed from half of the circumference of the apex of the elongating zone) curve away from the girdle. Inserting the half-girdle at the base of the elongating zone induces curvature towards the girdle. Filling the half-circumference girdles with mucilage-like material reduced curvature significantly. Stripping the epidermis and outer 2-5 layers of cortex from the terminal 1.5 cm of one side of a primary root induces curvature towards the cut, irrespective of the root's orientation to gravity. This effect is not due to desiccation since treated roots submerged in water also curved towards their cut surface. Coating a root's cut surface with a mucilage-like substance minimizes curvature. These results suggest that the outer cell-layers of the root, especially the epidermis, play an important role in root gravicurvature, and the gravitropic signals emanating from the root tip can move apoplastically through mucilage.

  9. Evaluation of the anatomical alterations of lower molars mesial root?s apical third

    Directory of Open Access Journals (Sweden)

    FRÖNER Izabel Cristina

    1999-01-01

    Full Text Available The anatomical apex of the mesial root of the lower molars presents a morphological complexity related to the number and shape of the root canals as well as of the apical foramen and isthmus presence. The knowledge of the complexity of the endodontic system of the molar root area is essencial to select more carefully the best instrumentation and obturation technique, to obtain a more successful endodontic therapy.

  10. Root system in declining forests

    Energy Technology Data Exchange (ETDEWEB)

    Meyer, F.H.

    1987-07-11

    Trees with obligate ectomycorrhiza are more sensitive to environmental stress than those without ectomycorrhiza or with facultative ectomycorrhiza. With spruce seedlings growing in humus material from a declining spruce forest an experimental proof was given, that reduction of the mineral nitrogen content by adding sawdust to the rooting substrate increases the share of root tips converted to ectomycorrhizas. A close correlation has been found between the mycorrhiza frequency and the number of root tips. This means, that the ramification of a root system is the more intense the better the conditions for mycorrhizal development are.

  11. Root systems and generalized associahedra

    OpenAIRE

    Fomin, Sergey; Reading, Nathan

    2005-01-01

    These lecture notes for the IAS/Park City Graduate Summer School in Geometric Combinatorics (July 2004) provide an overview of root systems, generalized associahedra, and the combinatorics of clusters. Lectures 1-2 cover classical material: root systems, finite reflection groups, and the Cartan-Killing classification. Lectures 3-4 provide an introduction to cluster algebras from a combinatorial perspective. Lecture 5 is devoted to related topics in enumerative combinatorics.

  12. Proteomic alterations in root tips of Arabidopsis thaliana seedlings under altered gravity conditions

    Science.gov (United States)

    Zheng, H. Q.; Wang, H.

    Gravity has a profound influence on plant growth and development Removed the influence of gravitational acceleration by spaceflight caused a wide range of cellular changes in plant Whole seedling that germinated and grown on clinostats showed the absent of gravitropism At the cellular level clinostat treatment has specific effects on plant cells such as induce alterations in cell wall composition increase production of heat-soluble proteins impact on the cellular energy metabolism facilitate a uniform distribution of plastids amyloplasts and increase number and volume of nucleoli A number of recent studies have shown that the exposure of Arabidopsis seedlings and callus cells to gravity stimulation hyper g-forces or clinostat rotation induces alterations in gene expression In our previous study the proteome of the Arabidopsis thaliana callus cells were separated by high resolution two-dimensional electrophoresis 2-DE Image analysis revealed that 80 protein spots showed quantitative and qualitative variations after exposure to clinostat rotation treatment We report here a systematic proteomic approach to investigate the altered gravity responsive proteins in root tip of Arabidopsis thaliana cv Landsberg erecta Three-day-old seedlings were exposed for 12h to a horizontal clinostat rotation H simulated weightlessness altered g-forces by centrifugation 7g hypergravity a vertical clinostat rotation V clinostat control or a stationary control grown conditions Total proteins of roots were extracted

  13. Maximal rank root subsystems of hyperbolic root systems

    OpenAIRE

    Tumarkin, P.

    2003-01-01

    A Kac-Moody algebra is called hyperbolic if it corresponds to a generalized Cartan matrix of hyperbolic type. We study root subsystems of root systems of hyperbolic algebras. In this paper, we classify maximal rank regular hyperbolic subalgebras of hyperbolic Kac-Moody algebras.

  14. Fluidity of pea root plasma membranes under altered gravity

    Science.gov (United States)

    Klymchuk, D. O.; Baranenko, V. V.; Vorobyova, T. V.; Dubovoy, V. D.

    This investigation aims to determine whether clinorotation 2 rev min of pea Pisum sativum L seedlings induces the alterations in the physical-chemical properties of cellular membranes including the plasma membrane fluidity The last is an important regulator of functional activity of membrane enzymes The plasma membranes were isolated by aqueous two-phase partitioning from roots of 6-day old pea seedlings The membrane fluidity was examined by fluorescence spectroscopy using pyrene probe The plasma membrane vesicles with known protein concentration were added to the incubation buffer to a final concentration of 50 mu g of protein per ml A small amount by 1 mu l of pyrene solution in 2-propanol was added to the incubation mixture to a final probe concentration 5 mu M at constant mixing Fluorescence spectra were measured using a Perkin-Elmer LS-50 spectrofluorometer Perkin-Elmer England Pyrene was excited at 337 nm and fluorescence intensity of monomers I M and excimers I E were measured at 393 and 470 nm respectively The I E I M ratios were 0 081 pm 0 003 and 0 072 pm 0 004 in preparations obtained from clinorotated and the control seedlings respectively This fact indicates that rotation on the clinostat increases the membrane fluidity Compared with controls clinorotated seedlings have also showed a reduced growth and a higher level of total unsaturated fatty acids determined by gas chromatography The factors that influence on the fluidity of membrane lipids in bilayer appear to be the

  15. Compensatory Root Water Uptake of Overlapping Root Systems

    Science.gov (United States)

    Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

    2015-12-01

    Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

  16. Identifying root system genes using induced mutants in barley

    International Nuclear Information System (INIS)

    Root systems play an important role in plant growth and development. They absorb water and nutrients, anchor plant in the soil and affect plant tolerance to various abiotic stresses. Despite their importance, the progress in understanding the molecular processes underlying root development has been achieved only in Arabidopsis thaliana. It was accomplished through detailed analysis of root mutants with the use of advanced molecular, genomic and bioinformatic tools. Recently, similar studies performed with rice and maize root mutants have led to the identification of homologous and novel genes controlling root system formation in monocots. The collection of barley mutants with changes in root system development and morphology has been developed in our Department after mutagenic treatments of spring barley varieties with N-methyl N-nitosourea (MNU) and sodium azide. Among these mutants, the majority was characterized by seminal roots significantly shorter than roots of a parent variety throughout a whole vegetation period. Additionally, several mutants with root hairs impaired at different stages of development have been identified. These mutants have become the material of studies aimed at genetic and molecular dissection of seminal root and root hair formation in barley. The studies included the molecular mapping of genes responsible for mutant phenotype using DNA markers and root transcriptome analysis in the mutant/parent variety system. Using cDNA RDA approach, we have identified the HvEXPB1 gene encoding root specific beta expansin related to the root hair initiation in barley. We have also initiated the database search for barley sequences homologous to the known Arabodopsis, maize and rice genes. The identified homologous ESTs are now used for isolation of the complete coding sequences and gene function will be validated through identification of mutations related to the altered phenotype. This work was supported by the IAEA Research Contracts 12611 and 12849

  17. X-ray computed tomography uncovers root-root interactions: quantifying spatial relationships between interacting root systems in three dimensions

    Directory of Open Access Journals (Sweden)

    Alexander Martin Paya

    2015-04-01

    Full Text Available Research in the field of plant biology has recently demonstrated that inter- and intra-specific interactions belowground can dramatically alter root growth. Our aim was to answer questions related to the effect of inter- vs. intra-specific interactions on the growth and utilization of undisturbed space by fine roots within three dimensions (3D using micro X-ray computed tomography. To achieve this, Populus tremuloides (quaking aspen and Picea mariana (black spruce seedlings were planted into containers as either solitary individuals, or inter-/intra-specific pairs, allowed to grow for two months, and 3D metrics developed in order to quantify their use of belowground space. In both aspen and spruce, inter-specific root interactions produced a shift in the vertical distribution of the root system volume, and deepened the average position of root tips when compared to intra-specifically growing seedlings. Inter-specific interactions also increased the minimum distance between root tips belonging to the same root system. There was no effect of belowground interactions on the radial distribution of roots, or the directionality of lateral root growth for either species. In conclusion, we found that significant differences were observed more often when comparing controls (solitary individuals and paired seedlings (inter- or intra-specific, than when comparing inter- and intra-specifically growing seedlings. This would indicate that competition between neighboring seedlings was more responsible for shifting fine root growth in both species than was neighbor identity. However, significant inter- vs. intra-specific differences were observed, which further emphasizes the importance of biological interactions in competition studies.

  18. Efficient hydraulic properties of root systems

    Science.gov (United States)

    Bechmann, Marcel; Schneider, Christoph; Carminati, Andrea; Hildebrandt, Anke

    2013-04-01

    Understanding the mechanisms of ecosystem root water uptake (RWU) is paramount for parameterizing hydrological models. With the increase in computational power it is possible to calculate RWU explicitly up to the single plant scale using physical models. However, application of these models for increasing our understanding of ecosystem root water uptake is hindered by the deficit in knowledge about the detailed hydraulic parameter distribution within root systems. However, those physical models may help us to identify efficient parameterizations and to describe the influence of these hydraulic parameters on RWU profiles. In this research, we investigated the combined influence of root hydraulic parameters and different root topologies on shaping efficient root water uptake. First, we use a conceptual model of simple branching structures to understand the influence of branching location and transitions in root hydraulic properties on the RWU patterns in typical sub root structures. Second, we apply a physical model called "aRoot" to test our conclusions on complex root system architectures of single plants. aRoot calculates the distribution of xylem potential within arbitrary root geometries to satisfy a given water demand depending on the available water in the soil. Redistribution of water within the bulk soil is calculated using the Richards equation. We analyzed results using a measure of uptake efficiency, which describes the effort necessary for transpiration. Simulations with the conceptual model showed that total transpiration in sub root structures is independent of root hydraulic properties over a wide range of hydraulic parameters. On the other hand efficiency of root water uptake depends crucially on distribution hydraulic parameters in line with root topology. At the same time, these parameters shape strongly the distribution of RWU along the roots, and its evolution in time, thus leading to variable individual root water uptake profiles. Calculating

  19. Root pruning reduces root competition in living mulch cropping systems

    OpenAIRE

    Båth, B.; Kristensen, Hanne Lakkenborg; Thorup-Kristensen, Kristian

    2009-01-01

    In intercropping systems with a cash crop and a living mulch intercrop, competition between the cash crop and the intercrop (the living mulch) often reduces the yield of the cash crop. This project investigated (1) the influence of root pruning of living mulches on aboveground biomass of white cabbage. Below-ground growth and competition were examined by measuring (2) root distribution in minirhizotrons and (3) uptake of 15N placed at different soil depths. Two field experiments were carried ...

  20. On rigidity of abstract root systems of Coxeter systems

    OpenAIRE

    Dyer, Matthew

    2010-01-01

    We introduce and study a combinatorially defined notion of root basis of a (real) root system of a possibly infinite Coxeter group. Known results on conjugacy up to sign of root bases of certain irreducible finite rank real root systems are extended to abstract root bases, to a larger class of real root systems, and, with a short list of (genuine) exceptions, to infinite rank irreducible Coxeter systems.

  1. Root exudate-induced alterations in Bacillus cereus cell wall contribute to root colonization and plant growth promotion.

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    Swarnalee Dutta

    Full Text Available The outcome of an interaction between plant growth promoting rhizobacteria and plants may depend on the chemical composition of root exudates (REs. We report the colonization of tobacco, and not groundnut, roots by a non-rhizospheric Bacillus cereus (MTCC 430. There was a differential alteration in the cell wall components of B. cereus in response to the REs from tobacco and groundnut. Attenuated total reflectance infrared spectroscopy revealed a split in amide I region of B. cereus cells exposed to tobacco-root exudates (TRE, compared to those exposed to groundnut-root exudates (GRE. In addition, changes in exopolysaccharides and lipid-packing were observed in B. cereus grown in TRE-amended minimal media that were not detectable in GRE-amended media. Cell-wall proteome analyses revealed upregulation of oxidative stress-related alkyl hydroperoxide reductase, and DNA-protecting protein chain (Dlp-2, in response to GRE and TRE, respectively. Metabolism-related enzymes like 2-amino-3-ketobutyrate coenzyme A ligase and 2-methylcitrate dehydratase and a 60 kDa chaperonin were up-regulated in response to TRE and GRE. In response to B. cereus, the plant roots altered their exudate-chemodiversity with respect to carbohydrates, organic acids, alkanes, and polyols. TRE-induced changes in surface components of B. cereus may contribute to successful root colonization and subsequent plant growth promotion.

  2. A statistical approach to root system classification.

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    Gernot eBodner

    2013-08-01

    Full Text Available Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for plant functional type identification in ecology can be applied to the classification of root systems. We demonstrate that combining principal component and cluster analysis yields a meaningful classification of rooting types based on morphological traits. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. Biplot inspection is used to determine key traits and to ensure stability in cluster based grouping. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Three rooting types emerged from measured data, distinguished by diameter/weight, density and spatial distribution respectively. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement

  3. Systems approaches to study root architecture dynamics

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    Candela eCuesta

    2013-12-01

    Full Text Available The plant root system is essential for providing anchorage to the soil, supplying minerals and water, and synthesizing metabolites. It is a dynamic organ modulated by external cues such as environmental signals, water and nutrients availability, salinity and others. Lateral roots are initiated from the primary root post-embryonically, after which they progress through discrete developmental stages which can be independently controlled, providing a high level of plasticity during root system formation.Within this review, main contributions are presented, from the classical forward genetic screens to the more recent high-throughput approaches, combined with computer model predictions, dissecting how lateral roots and thereby root system architecture is established and developed.

  4. Rapid phenotyping of alfalfa root system architecture

    Science.gov (United States)

    Root system architecture (RSA) influences the capacity of an alfalfa plant for symbiotic nitrogen fixation, nutrient uptake and water use efficiency, resistance to frost heaving, winterhardiness, and some pest and pathogen resistance. However, we currently lack a basic understanding of root system d...

  5. Seasonal changes of whole root system conductance by a drought-tolerant grape root system

    OpenAIRE

    Alsina, Maria Mar; Smart, David R.; Bauerle, Taryn; de Herralde, Felicidad; Biel, Carme; Stockert, Christine; Negron, Claudia; Save, Robert

    2010-01-01

    The role of root systems in drought tolerance is a subject of very limited information compared with above-ground responses. Adjustments to the ability of roots to supply water relative to shoot transpiration demand is proposed as a major means for woody perennial plants to tolerate drought, and is often expressed as changes in the ratios of leaf to root area (A L:A R). Seasonal root proliferation in a directed manner could increase the water supply function of roots independent of total root...

  6. Advances in experimental methods for root system architecture and root development

    Institute of Scientific and Technical Information of China (English)

    Jun-bang Wang; Xiu-juan Zhang; Chu Wu

    2015-01-01

    Plant roots play important roles in acquisition of water and nutrients, storage, anchoring, transport, and symbiosis with soil microorganisms, thus quantitative researches on root developmental processes are essential to understand root functions and root turnover in ecosystems, and at the same time such researches are the most difficult because roots are hidden underground. Therefore, how to investigate efficiently root functions and root dynamics is the core aspect in underground ecology. In this article, we reviewed some experimental methods used in root resear-ches on root development and root system architecture, and summarized the advantages and shortages of these meth-ods. Based on the analyses, we proposed three new ways to more understand root processes: (1) new experimental materials for root development; (2) a new observatory system comprised of multiple components, including many observatory windows installed in field, analysis software, and automatic data transport devices; (3) new techniques used to analyze quantitatively functional roots.

  7. Fine-scale spatial structure of root-associated fungi within a single plant root system

    OpenAIRE

    Thoen, Ella

    2014-01-01

    Ectomycorrhiza (ECM) is an ancient and prevalent symbiosis between plants and fungi, and is crucial for growth and survival for a number of plants. Host plants can form ECM with multiple fungi, yet little is known about the fine-scale structure of root associated fungi within single root systems. The motivation for this study was to increase our knowledge about the richness, diversity and spatial distribution of fungal root symbionts within single root systems. An entire root system of the EC...

  8. Alterações morfológicas no sistema radicular do milho induzidas por fungos micorrízicos e fósforo Morphological alterations on root system of maize induced by mycorrhizal fungi and phosphorus

    Directory of Open Access Journals (Sweden)

    Wellington Bressan

    2002-04-01

    Full Text Available O objetivo deste trabalho, conduzido em casa de vegetação, foi avaliar os efeitos da inoculação de fungos micorrízicos arbusculares (Glomus etunicatum e Glomus clarum e da adição de níveis de P (0, 50, 100 e 200 mg/kg de solo sobre a morfologia do sistema radicular do milho (Zea mays L., cultivar BR 201, e a concentração de P na planta, em duas épocas de colheita (18 e 104 dias após semeadura em solo Latossolo Vermelho-Escuro distrófico desinfestado com Bromex. O experimento foi realizado na Embrapa-Centro Nacional de Pesquisa de Milho e Sorgo, Sete Lagoas, MG. A inoculação de fungos micorrízicos aumentou o peso das raízes secas, o número de raízes laterais primárias e secundárias, e o teor de P na planta, porém reduziu a relação peso das raízes secas/peso da parte aérea seca e o número de pêlos radiculares. Esses efeitos foram dependentes das doses de P aplicadas ao solo e da espécie de fungo micorrízico. O peso das raízes secas das plantas micorrizadas mostrou correlação significativa (PThe objective of this research, carried out under greenhouse conditions was to evaluate the effect of mycorrhizal fungi (Glomus etunicatum and Glomus clarum inoculation and P levels (0, 50, 100 e 200 mg/kg of soil on maize (Zea mays L. root system morphology, cultivar BR 201, and P plant concentration in two harvest period (18 and 104 days after sowing in disinfested dystrophic Dark-Red Latosol. The experiment was carried out under greenhouse conditions at Embrapa-Centro Nacional de Pesquisa de Milho e Sorgo, in Sete Lagoas, Minas Gerais, Brazil. Inoculation with mycorrhizal fungi increased root dry weight, number of first and second order lateral roots and P concentration in the plant, but decreased root/shoot dry weight ratio and number of root hairs. These effects were affected by P concentration in the soil and by mycorrhizal fungi species. Root dry weight of inoculated plants showed significative (P<=0.05 correlation to

  9. Altered microRNA expression following sciatic nerve resection in dorsal root ganglia of rats

    Institute of Scientific and Technical Information of China (English)

    Bin Yu; Songlin Zhou; Tianmei Qian; Yongjun Wang; Fei Ding; Xiaosong Gu

    2011-01-01

    MicroRNAs (miRNAs) are a class of small,non-coding RNAs (~22 nucleotides) that negatively regulate gene expression post-transcriptionally,either through translational inhibition or degradation of target mRNAs.We uncovered a previously unknown alteration in the expression of miRNAs in the dorsal root ganglia (DRG) at 1,4,7,and 14 days after resection of the sciatic nerve in rats using microarray analysis.Thirty-two significantly upregulated and 18 downregulated miRNAs were identified in the DRG at four time points following sciatic nerve injury.The expression of four consecutively deregulated miRNAs,analyzed by real-time Taqman polymerase chain reaction,was in agreement with the microarray data (upregulated: miR-21,miR-221; downregulated:miR-500,miR-551b),The potential targets for these miRNAs,altered after sciatic nerve resection,are involved mainly in nervous system development,multi-cellular organismal development,and the regulation of cellular processes.This study demonstrated a different involvement of miRNAs in the DRG after resection of the sciatic nerve in a rat model,and it may also contribute in illustrating the molecular mechanisms responsible for nerve regeneration.

  10. Modelling water uptake efficiency of root systems

    Science.gov (United States)

    Leitner, Daniel; Tron, Stefania; Schröder, Natalie; Bodner, Gernot; Javaux, Mathieu; Vanderborght, Jan; Vereecken, Harry; Schnepf, Andrea

    2016-04-01

    Water uptake is crucial for plant productivity. Trait based breeding for more water efficient crops will enable a sustainable agricultural management under specific pedoclimatic conditions, and can increase drought resistance of plants. Mathematical modelling can be used to find suitable root system traits for better water uptake efficiency defined as amount of water taken up per unit of root biomass. This approach requires large simulation times and large number of simulation runs, since we test different root systems under different pedoclimatic conditions. In this work, we model water movement by the 1-dimensional Richards equation with the soil hydraulic properties described according to the van Genuchten model. Climatic conditions serve as the upper boundary condition. The root system grows during the simulation period and water uptake is calculated via a sink term (after Tron et al. 2015). The goal of this work is to compare different free software tools based on different numerical schemes to solve the model. We compare implementations using DUMUX (based on finite volumes), Hydrus 1D (based on finite elements), and a Matlab implementation of Van Dam, J. C., & Feddes 2000 (based on finite differences). We analyse the methods for accuracy, speed and flexibility. Using this model case study, we can clearly show the impact of various root system traits on water uptake efficiency. Furthermore, we can quantify frequent simplifications that are introduced in the modelling step like considering a static root system instead of a growing one, or considering a sink term based on root density instead of considering the full root hydraulic model (Javaux et al. 2008). References Tron, S., Bodner, G., Laio, F., Ridolfi, L., & Leitner, D. (2015). Can diversity in root architecture explain plant water use efficiency? A modeling study. Ecological modelling, 312, 200-210. Van Dam, J. C., & Feddes, R. A. (2000). Numerical simulation of infiltration, evaporation and shallow

  11. Arabidopsis: An Adequate Model for Dicot Root Systems?

    OpenAIRE

    Zobel, Richard W.

    2016-01-01

    The Arabidopsis root system is frequently considered to have only three classes of root: primary, lateral, and adventitious. Research with other plant species has suggested up to eight different developmental/functional classes of root for a given plant root system. If Arabidopsis has only three classes of root, it may not be an adequate model for eudicot plant root systems. Recent research, however, can be interpreted to suggest that pre-flowering Arabidopsis does have at least five (5) of t...

  12. Improvement of Root System Architecture in Peach (Prunus persica Seedlings by Arbuscular Mycorrhizal Fungi, Related to Allocation of Glucose/Sucrose to Root

    Directory of Open Access Journals (Sweden)

    Qiang-Sheng WU

    2011-11-01

    Full Text Available Root system architecture (RSA is used to describe the spatial configuration of a root system in the soil, which substantially determines the capacity of a plant to take up nutrients and water. The present study was to assess if arbuscular mycorrhizal fungi (AMF, Glomus mosseae, G. versiforme, and Paraglomus occultum would alter RSA of peach (Prunus persica L. Batsch seedlings, and the alteration due to mycorrhization was related to allocation of glucose/sucrose to root (Aglucose/sucrose. Inoculation with G. mosseae and G. versiforme significantly increased leaf, stem, root and total fresh weights, compared with non-AMF treatment. Mycorrhizal alterations of RSA in peach plants were dependent on AMF species, because only G. mosseae and G. versiforme but not P. occultum markedly increased root length, root projected area, root surface area and root volume. For the distribution of root length classes, AMF mainly increased 0-1 and 3-4 cm root length classes, which is AMF species dependent. Inoculated seedlings with Glomus species recorded significantly higher root sucrose and leaf and root glucose concentrations and lower root sucrose concentrations than un-inoculated control. Compared with the non-AMF treatment, G. mosseae and G. versiforme generally increased the Aglucose and Asucrose, but P. occultum significantly decreased the Aglucose and Asucrose. Asucrose or Aglucose was significantly positive correlated with root length, root projected area and root surface area. The results suggest that AMF modified variables of RSA in peach, which is AMF species dependent and related to Aglucose and Asucrose.

  13. Experimental geobiology links evolutionary intensification of rooting systems and weathering

    Science.gov (United States)

    Quirk, Joe; Beerling, David; Leake, Jonathan

    2016-04-01

    The evolution of mycorrhizal fungi in partnership with early land plants over 440 million years ago led to the greening of the continents by plants of increasing biomass, rooting depth, nutrient demand and capacity to alter soil minerals, culminating in modern forested ecosystems. The later co-evolution of trees and rooting systems with arbuscular mycorrhizal (AM) fungi, together driving the biogeochemical cycling of elements and weathering of minerals in soil to meet subsequent increased phosphorus demands is thought to constitute one the most important biotic feedbacks on the geochemical carbon cycle to emerge during the Phanerozoic, and fundamentally rests on the intensifying effect of trees and their root-associating mycorrhizal fungal partners on mineral weathering. Here I present experimental and field evidence linking these evolutionary events to a mechanistic framework whereby: (1) as plants evolved in stature, biomass, and rooting depth, their mycorrhizal fungal partnerships received increasing amounts of plant photosynthate; (2) this enabled intensification of plant-driven fungal weathering of rocks to release growth-limiting nutrients; (3) in turn, this increased land-to-ocean export of Ca and P and enhanced ocean carbonate precipitation impacting the global carbon cycle and biosphere-geosphere-ocean-atmosphere interactions over the past 410 Ma. Our findings support an over-arching hypothesis that evolution has selected plant and mycorrhizal partnerships that have intensified mineral weathering and altered global biogeochemical cycles.

  14. Tree root systems and nutrient mobilization

    DEFF Research Database (Denmark)

    Boyle, Jim; Rob, Harrison; Raulund-Rasmussen, Karsten;

    Roots mobilize nutrients via deep penetration and rhizosphere processes inducing weathering of primary minerals. These contribute to C transfer to soils and to tree nutrition. Assessments of these characteristics and processes of root systems are important for understanding long-term supplies of...... some of the world’s most productive intensively managed forests, including Brazil and the Southeast and Pacifi c Northwest regions of the United States, have shown that root systems are often several meters in depth, and often extend deeper than soil is sampled. Large amounts of carbon are also...... nutrient elements essential for forest growth and resilience. Research and techniques have signifi cantly advanced since Olof Tamm’s 1934 base mineral index for Swedish forest soils, and basic nutrient budget estimates for whole-tree harvesting systems of the 1970s. Recent research in areas that include...

  15. Rank-3 root systems induce root systems of rank 4 via a new Clifford spinor construction

    Science.gov (United States)

    Dechant, Pierre-Philippe

    2015-04-01

    In this paper, we show that via a novel construction every rank-3 root system induces a root system of rank 4. Via the Cartan-Dieudonné theorem, an even number of successive Coxeter reflections yields rotations that in a Clifford algebra framework are described by spinors. In three dimensions these spinors themselves have a natural four-dimensional Euclidean structure, and discrete spinor groups can therefore be interpreted as 4D polytopes. In fact, we show that these polytopes have to be root systems, thereby inducing Coxeter groups of rank 4, and that their automorphism groups include two factors of the respective discrete spinor groups trivially acting on the left and on the right by spinor multiplication. Special cases of this general theorem include the exceptional 4D groups D4, F4 and H4, which therefore opens up a new understanding of applications of these structures in terms of spinorial geometry. In particular, 4D groups are ubiquitous in high energy physics. For the corresponding case in two dimensions, the groups I2(n) are shown to be self-dual, whilst via a similar construction in terms of octonions each rank-3 root system induces a root system in dimension 8; this root system is in fact the direct sum of two copies of the corresponding induced 4D root system.

  16. Exogenous gibberellin altered morphology, anatomic and transcriptional regulatory networks of hormones in carrot root and shoot

    OpenAIRE

    Wang, Guang-Long; Que, Feng; Xu, Zhi-Sheng; Wang, Feng; Xiong, Ai-Sheng

    2015-01-01

    Background Gibberellins stimulate cell elongation and expansion during plant growth and development. Carrot is a root plant with great value and undergoes obvious alteration in organ size over the period of plant growth. However, the roles of gibberellins in carrot remain unclear. Results To investigate the effects of gibberelliins on the growth of carrot, we treated carrot plants with gibberellic acid 3 (GA3) or paclobutrazol (a gibberellin inhibitor). The results found that GA3 dramatically...

  17. Complementary root systems in organic intercropping of vegetables

    OpenAIRE

    Xie, Yue; Kristensen, Hanne Lakkenborg

    2013-01-01

    The deep root system of the intercrop dyers woad complemented the shallow root system of leek without jeopar- dizing leek yields. These results show perspectives for reduction of nitrate leaching from organic leek production.

  18. Bessel functions for root systems via the trigonometric setting

    DEFF Research Database (Denmark)

    Ørsted, Bent; Said, S.B.

    2005-01-01

    In this paper, we study generalized Bessel functions related to root systems and give explicit formulas in several cases.......In this paper, we study generalized Bessel functions related to root systems and give explicit formulas in several cases....

  19. Oxidation deoxidize metabolism in the rice altered lateral root mutant RM109

    International Nuclear Information System (INIS)

    The author reports the characteristics of a 2,4-D resistance mutant, altered lateral root, RM109, which is deficient in SDH (succinate dehydrogenase) activity. The SDH activity of RM109 was 60%-70% of that the wild type. Oochikara, roots is treated with reducer NADPH, NADH and FAD, the SDH activity of RM109 were lower than Oochikara. Genetic analysis in the F1 and F2 indicated that SDH activity in the mutant was transmitted by a single dominant nuclear gene. The observations of resistance to plant hormone, TIBA and H2O2 showed that the resistance to 2,4-D, NAA, TIBA and H2O2 with RM109 were 12,8,6 and 0.24 times of those with Oochikara, respectively. These results indicated that the mutant was deficient in oxidation deoxidize metabolism

  20. Evaluation of the morphological alteration of the root surface radiated with a diode laser

    International Nuclear Information System (INIS)

    The diode laser has been studied for periodontal therapy, as much for removal of calculus as for microbial reduction of periodontal pockets, as well as the visible analgesic effects and biomodulation capacity. For this reason the purpose of this study was to evaluate the morphological alteration of the root surface after radiation with the diode laser, 808 nm through analysis by scanning electron microscopy (SEM). Besides this, to verify the temperature variations caused during the radiation, a thermometer put into the dentinal wall of the root canal was used. In all, 18 teeth were used, 15 of which for the SEM study, and the other 3 were used to temperature variation analysis. The 25 samples were scraped on the root surface and planed with manual instruments. The other 5 were not subjected to any type of treatment. This, 6 groups of 5 samples each were formed. Control Group C whose samples had not received any treatment; Control Group C 1 was only scraped and polished conventionally with Hu-Friedy Gracey curettes 5 and 6; the other samples groups L1, L2, L3, L4 were radiated by diode laser using parameters of power 1,0 W; 1,2 W; 1,4 W; and 1,6 W respectively, 2 times for 10 seconds with 20 seconds intervals between each radiation in continuous mode. The results with relation to the increase of temperature in the interior of the root canal demonstrated that there was an increase of more than 5 degree Celsius. The results of the scanning electron microscope analysis of Control Group C demonstrated great irregularity and ridges on the root surface, with the presence of a dentine layer. Control Group C1 presented a similar aspect to Group L 1's, smoother and more homogeneous surface. Groups L2, L3, and L4 presented scratches alternating with smoother areas showing that fiber contacted the surface of the sample. The results reconfirmed the necessity of further studies using diode laser, with a beam of light emitted in an interrupted mode to improve the control of the

  1. Tannins Alter Soil Organic Matter Extraction, Solubility of Metals, and Root Physiology

    Science.gov (United States)

    Tannins are common plant-derived polyphenolic compounds that precipitate proteins and react with other biomolecules but knowledge of their effects on soil organic matter, the solubility of metals, and root physiology is incomplete. Soil from forest and pasture systems was treated with tannic acid (...

  2. A residue calculus for root systems

    OpenAIRE

    Ban, E. P. van den; Schlichtkrull, H.

    2001-01-01

    Let V be a nite dimensional real vector space on which a root system is given. Consider a meromorphic function ' on VC = V +iV , the singular locus of which is a locally nite union of hyperplanes of the form f 2 VC j h; i = sg, 2 , s 2 R. Assume ' is of suitable decay in the imaginary directions, so that integrals of the form R +iV '() d make sense for generic 2 V . A residue calculus is developed that allows shifting . This residue calculus can be used to obtain Plancherel and Paley{Wiener t...

  3. A Physiological and Behavioral Mechanism for Leaf Herbivore-Induced Systemic Root Resistance.

    Science.gov (United States)

    Erb, Matthias; Robert, Christelle A M; Marti, Guillaume; Lu, Jing; Doyen, Gwladys R; Villard, Neil; Barrière, Yves; French, B Wade; Wolfender, Jean-Luc; Turlings, Ted C J; Gershenzon, Jonathan

    2015-12-01

    Indirect plant-mediated interactions between herbivores are important drivers of community composition in terrestrial ecosystems. Among the most striking examples are the strong indirect interactions between spatially separated leaf- and root-feeding insects sharing a host plant. Although leaf feeders generally reduce the performance of root herbivores, little is known about the underlying systemic changes in root physiology and the associated behavioral responses of the root feeders. We investigated the consequences of maize (Zea mays) leaf infestation by Spodoptera littoralis caterpillars for the root-feeding larvae of the beetle Diabrotica virgifera virgifera, a major pest of maize. D. virgifera strongly avoided leaf-infested plants by recognizing systemic changes in soluble root components. The avoidance response occurred within 12 h and was induced by real and mimicked herbivory, but not wounding alone. Roots of leaf-infested plants showed altered patterns in soluble free and soluble conjugated phenolic acids. Biochemical inhibition and genetic manipulation of phenolic acid biosynthesis led to a complete disappearance of the avoidance response of D. virgifera. Furthermore, bioactivity-guided fractionation revealed a direct link between the avoidance response of D. virgifera and changes in soluble conjugated phenolic acids in the roots of leaf-attacked plants. Our study provides a physiological mechanism for a behavioral pattern that explains the negative effect of leaf attack on a root-feeding insect. Furthermore, it opens up the possibility to control D. virgifera in the field by genetically mimicking leaf herbivore-induced changes in root phenylpropanoid patterns. PMID:26430225

  4. Photosynthate Regulation of the Root System Architecture Mediated by the Heterotrimeric G Protein Complex in Arabidopsis.

    Science.gov (United States)

    Mudgil, Yashwanti; Karve, Abhijit; Teixeira, Paulo J P L; Jiang, Kun; Tunc-Ozdemir, Meral; Jones, Alan M

    2016-01-01

    Assimilate partitioning to the root system is a desirable developmental trait to control but little is known of the signaling pathway underlying partitioning. A null mutation in the gene encoding the Gβ subunit of the heterotrimeric G protein complex, a nexus for a variety of signaling pathways, confers altered sugar partitioning in roots. While fixed carbon rapidly reached the roots of wild type and agb1-2 mutant seedlings, agb1 roots had more of this fixed carbon in the form of glucose, fructose, and sucrose which manifested as a higher lateral root density. Upon glucose treatment, the agb1-2 mutant had abnormal gene expression in the root tip validated by transcriptome analysis. In addition, PIN2 membrane localization was altered in the agb1-2 mutant. The heterotrimeric G protein complex integrates photosynthesis-derived sugar signaling incorporating both membrane-and transcriptional-based mechanisms. The time constants for these signaling mechanisms are in the same range as photosynthate delivery to the root, raising the possibility that root cells are able to use changes in carbon fixation in real time to adjust growth behavior. PMID:27610112

  5. Phosphate starvation of maize inhibits lateral root formation and alters gene expression in the lateral root primordium zone

    Directory of Open Access Journals (Sweden)

    Li Zhaoxia

    2012-06-01

    Full Text Available Abstract Background Phosphorus (P is an essential macronutrient for all living organisms. Maize (Zea mays is an important human food, animal feed and energy crop throughout the world, and enormous quantities of phosphate fertilizer are required for maize cultivation. Thus, it is important to improve the efficiency of the use of phosphate fertilizer for maize. Results In this study, we analyzed the maize root response to phosphate starvation and performed a transcriptomic analysis of the 1.0-1.5 cm lateral root primordium zone. In the growth of plants, the root-to-shoot ratio (R/L was reduced in both low-phosphate (LP and sufficient-phosphate (SP solutions, but the ratio (R/L exhibited by the plants in the LP solution was higher than that of the SP plants. The growth of primary roots was slightly promoted after 6 days of phosphate starvation, whereas the numbers of lateral roots and lateral root primordia were significantly reduced, and these differences were increased when associated with the stress caused by phosphate starvation. Among the results of a transcriptomic analysis of the maize lateral root primordium zone, there were two highlights: 1 auxin signaling participated in the response and the modification of root morphology under low-phosphate conditions, which may occur via local concentration changes due to the biosynthesis and transport of auxin, and LOB domain proteins may be an intermediary between auxin signaling and root morphology; and 2 the observed retardation of lateral root development was the result of co-regulation of DNA replication, transcription, protein synthesis and degradation and cell growth. Conclusions These results indicated that maize roots show a different growth pattern than Arabidopsis under low-phosphate conditions, as the latter species has been observed to halt primary root growth when the root tip comes into contact with low-phosphate media. Moreover, our findings enrich our understanding of plant

  6. Chromosomal and Nuclear Alterations in Root Tip Cells of Allium Cepa L. Induced by Alprazolam

    Science.gov (United States)

    Nefic, Hilada; Musanovic, Jasmin; Metovic, Azra; Kurteshi, Kemajl

    2013-01-01

    ABSTRACT Introduction: Alprazolam is a triazolobenzodiazepine used in panic disorders and other anxiety states. Target organ of Alprazolam is CNS, causing depression of respiration and consciousness. Aim: This study aimed to estimate the genotoxic potential of Alprazolam using Allium cepa test. Methods: Allium cepa is one of the most suitable plants for detecting different types of xenobiotics. The test enables the assessment of different genetic endpoints making possible damage to the DNA of humans to be predicted. Results: Alprazolam induced chromosomal (anaphase bridges, breaks, lagging and stickiness, abnormal spiralisation, multipolarity and polyploidy) and cytological aberrations, especially nuclear alterations (nuclear buds, fragmented nucleus and apoptotic bodies, cells without nucleus, binucleated and micronucleated cells), morphological alterations in shape and size of cells, spindle disturbance and polar deviation in root tip meristem cells of Allium cepa at all tested concentrations. Alprazolam also caused significant inhibition of mitotic index in these cells. Conclusion: These changes in cells are indicators of genotoxic potential of Alprazolam suggesting a need for further in vitro studies on animal and human lymphocytes as well as in vivo studies. PMID:25568504

  7. Altered susceptibility to infection by Sinorhizobium meliloti and Nectria haematococca in alfalfa roots with altered cell cycle.

    Science.gov (United States)

    Woo, H-H; Hirsch, A M; Hawes, M C

    2004-07-01

    Most infections of plant roots are initiated in the region of elongation; the mechanism for this tissue-specific localization pattern is unknown. In alfalfa expressing PsUGT1 antisense mRNA under the control of the cauliflower mosaic virus (CaMV) 35S promoter, the cell cycle in roots is completed in 48 h instead of 24 h, and border cell number is decreased by more than 99%. These plants were found to exhibit increased root-tip infection by a fungal pathogen and reduced nodule formation by a bacterial symbiont. Thus, the frequency of infection in the region of elongation by Nectria haematocca was unaffected, but infection of the root tip was increased by more than 90%; early stages of Sinorhizobium meliloti infection and nodule morphology were normal, but the frequency of nodulation was fourfold lower than in wild-type roots. PMID:15042410

  8. Drought and root herbivory interact to alter the response of above-ground parasitoids to aphid infested plants and associated plant volatile signals

    OpenAIRE

    Muhammad Tariq; Wright, Denis J.; Bruce, Toby J. A.; Staley, Joanna T.

    2013-01-01

    Multitrophic interactions are likely to be altered by climate change but there is little empirical evidence relating the responses of herbivores and parasitoids to abiotic factors. Here we investigated the effects of drought on an above/below-ground system comprising a generalist and a specialist aphid species (foliar herbivores), their parasitoids, and a dipteran species (root herbivore).We tested the hypotheses that: (1) high levels of drought stress and below-ground herbivory interact to r...

  9. Copper-induced alteration in sucrose partitioning and its relationship to the root growth of two Elsholtzia haichowensis Sun populations.

    Science.gov (United States)

    Li, Min-Jing; Xiong, Zhi-Ting; Liu, Hui; Kuo, Yi-Ming; Tong, Lei

    2016-10-01

    Hydroponic culture was used to comparatively investigate the copper (Cu)-induced alteration to sucrose metabolism and biomass allocation in two Elsholtzia haichowensis Sun populations with one from a Cu-contaminated site (CS) and the other from a non-contaminated site (NCS). Experimental results revealed that biomass allocation preferred roots over shoots in CS population, and shoots over roots in NCS population under Cu exposure. The difference in biomass allocation was correlated with the difference in sucrose partitioning between the two populations. Cu treatment (45 μM) significantly decreased leaf sucrose content and increased root sucrose content in CS population as a result of the increased activities of leaf sucrose synthesis enzymes (sucrose phosphate synthetase and sucrose synthase) and root sucrose cleavage enzyme (vacuolar invertase), which led to increased sucrose transport from leaves to roots. In contrast, higher Cu treatment increased sucrose content in leaves and decreased sucrose content in roots in NCS population as a result of the decreased activities of root sucrose cleavage enzymes (vacuolar and cell wall invertases) that led to less sucrose transport from leaves to roots. These results provide important insights into carbon resource partitioning and biomass allocation strategies in metallophytes and are beneficial for the implementation of phytoremediation techniques. PMID:27153457

  10. Root System Markup Language: toward an unified root architecture description language

    OpenAIRE

    Lobet, Guillaume; Pound, Michael; Diener, Julien; Pradal, Christophe; Draye, Xavier; Godin, Christophe; Javaux, Mathieu; Leitner, Daniel; Meunier, Felicien; Nacry, Philippe; Pridmore, Tony; Schnepf, Andrea

    2015-01-01

    International audience The number of image analysis tools supporting the extraction of architectural features of root systems has increased over the last years. These tools offer a handy set of complementary facilities, yet it is widely accepted that none of these software tool is able to extract in an efficient way growing array of static and dynamic features for different types of images and species. . We describe the Root System Markup Language (RSML) that has been designed to overcome ...

  11. Tree root systems competing for soil moisture in a 3D soil-plant model

    Science.gov (United States)

    Manoli, Gabriele; Bonetti, Sara; Domec, Jean-Christophe; Putti, Mario; Katul, Gabriel; Marani, Marco

    2014-04-01

    Competition for water among multiple tree rooting systems is investigated using a soil-plant model that accounts for soil moisture dynamics and root water uptake (RWU), whole plant transpiration, and leaf-level photosynthesis. The model is based on a numerical solution to the 3D Richards equation modified to account for a 3D RWU, trunk xylem, and stomatal conductances. The stomatal conductance is determined by combining a conventional biochemical demand formulation for photosynthesis with an optimization hypothesis that selects stomatal aperture so as to maximize carbon gain for a given water loss. Model results compare well with measurements of soil moisture throughout the rooting zone, of total sap flow in the trunk xylem, as well as of leaf water potential collected in a Loblolly pine forest. The model is then used to diagnose plant responses to water stress in the presence of competing rooting systems. Unsurprisingly, the overlap between rooting zones is shown to enhance soil drying. However, the 3D spatial model yielded transpiration-bulk root-zone soil moisture relations that do not deviate appreciably from their proto-typical form commonly assumed in lumped eco-hydrological models. The increased overlap among rooting systems primarily alters the timing at which the point of incipient soil moisture stress is reached by the entire soil-plant system.

  12. On Split Lie Algebras with Symmetric Root Systems

    Indian Academy of Sciences (India)

    Antonio J Calderón Martín

    2008-08-01

    We develop techniques of connections of roots for split Lie algebras with symmetric root systems. We show that any of such algebras is of the form $L=\\mathcal{U}+\\sum_j I_j$ with $\\mathcal{U}$ a subspace of the abelian Lie algebra and any $I_j$ a well described ideal of , satisfying $[I_j,I_k]=0$ if $j≠ k$. Under certain conditions, the simplicity of is characterized and it is shown that is the direct sum of the family of its minimal ideals, each one being a simple split Lie algebra with a symmetric root system and having all its nonzero roots connected.

  13. Imaging and characterizing root systems using electrical impedance tomography

    Science.gov (United States)

    Kemna, A.; Weigand, M.; Kelter, M.; Pfeifer, J.; Zimmermann, E.; Walter, A.

    2011-12-01

    Root architecture, growth, and activity play an essential role regarding the nutrient uptake of roots in soils. While in recent years advances could be achieved concerning the modeling of root systems, measurement methods capable of imaging, characterizing, and monitoring root structure and dynamics in a non-destructive manner are still lacking, in particular at the field scale. We here propose electrical impedance tomography (EIT) for the imaging of root systems. The approach takes advantage of the low-frequency capacitive electrical properties of the soil-root interface and the root tissue. These properties are based on the induced migration of ions in an externally applied electric field and give rise to characteristic impedance spectra which can be measured by means of electrical impedance spectroscopy. The latter technique was already successfully applied in the 10 Hz to 1 MHz range by Ozier-Lafontaine and Bajazet (2005) to monitor root growth of tomato. We here apply the method in the 1 mHz to 45 kHz range, requiring four-electrode measurements, and demonstrate its implementation and potential in an imaging framework. Images of real and imaginary components of complex electrical conductivity are computed using a finite-element based inversion algorithm with smoothness-constraint regularization. Results from laboratory measurements on rhizotrons with different root systems (barley, rape) show that images of imaginary conductivity delineate the spatial extent of the root system under investigation, while images of real conductivity show a less clear response. As confirmed by numerical simulations, the latter could be explained by the partly compensating electrical conduction properties of epidermis (resistive) and inner root cells (conductive), indicating the limitations of conventional electrical resistivity tomography. The captured spectral behavior exhibits two distinct relaxation processes with Cole-Cole type signatures, which we interpret as the responses

  14. Inflammation and Immune System Alterations in Frailty

    OpenAIRE

    Yao, Xu; Li, Huifen; Leng, Sean X.

    2011-01-01

    Frailty is an important geriatric syndrome characterized by multi-system dysregulation. Substantial evidence suggests heightened inflammatory state and significant immune system alterations in frailty. A heightened inflammatory state is marked by increases in levels of inflammatory molecules (IL-6 and CRP) and counts of white blood cell and its subpopulations, which may play an important role in the pathogenesis of frailty, directly or through its detrimental influence to other physiologic sy...

  15. Accounting carbon storage in decaying root systems of harvested forests.

    Science.gov (United States)

    Wang, G Geoff; Van Lear, David H; Hu, Huifeng; Kapeluck, Peter R

    2012-05-01

    Decaying root systems of harvested trees can be a significant component of belowground carbon storage, especially in intensively managed forests where harvest occurs repeatedly in relatively short rotations. Based on destructive sampling of root systems of harvested loblolly pine trees, we estimated that root systems contained about 32% (17.2 Mg ha(-1)) at the time of harvest, and about 13% (6.1 Mg ha(-1)) of the soil organic carbon 10 years later. Based on the published roundwood output data, we estimated belowground biomass at the time of harvest for loblolly-shortleaf pine forests harvested between 1995 and 2005 in South Carolina. We then calculated C that remained in the decomposing root systems in 2005 using the decay function developed for loblolly pine. Our calculations indicate that the amount of C stored in decaying roots of loblolly-shortleaf pine forests harvested between 1995 and 2005 in South Carolina was 7.1 Tg. Using a simple extrapolation method, we estimated 331.8 Tg C stored in the decomposing roots due to timber harvest from 1995 to 2005 in the conterminous USA. To fully account for the C stored in the decomposing roots of the US forests, future studies need (1) to quantify decay rates of coarse roots for major tree species in different regions, and (2) to develop a methodology that can determine C stock in decomposing roots resulting from natural mortality. PMID:22535427

  16. Plant growth-promoting rhizobacteria and root system functioning

    OpenAIRE

    Vacheron, Jordan; Desbrosses, Guilhem; Bouffaud, Marie-Lara; Touraine, Bruno; Moënne-Loccoz, Yvan; Muller, Daniel; Legendre, Laurent; Wisniewski-Dyé, Florence; Prigent-Combaret, Claire

    2013-01-01

    The rhizosphere supports the development and activity of a huge and diversified microbial community, including microorganisms capable to promote plant growth. Among the latter, plant growth-promoting rhizobacteria (PGPR) colonize roots of monocots and dicots, and enhance plant growth by direct and indirect mechanisms. Modification of root system architecture by PGPR implicates the production of phytohormones and other signals that lead, mostly, to enhanced lateral root branching and developme...

  17. Plant growth-promoting rhizobacteria and root system functioning

    OpenAIRE

    Jordan eVacheron; Guilhem eDesbrosses; Marie-Lara eBouffaud; Bruno eTouraine; Yvan eMoënne-Loccoz; Daniel eMuller; Laurent eLegendre; Florence eWisniewski-Dyé; Claire ePrigent-Combaret

    2013-01-01

    The rhizosphere supports the development and activity of a huge and diversified microbial community, including microorganisms capable to promote plant growth. Among the latter, Plant Growth-Promoting Rhizobacteria (PGPR) colonize roots of monocots and dicots, and enhance plant growth by direct and indirect mechanisms. Modification of root system architecture by PGPR implicates the production of phytohormones and other signals that lead, mostly, to enhanced lateral root branching and developme...

  18. The root system of the husk tomato (Physalis ixocarpa Brot.

    Directory of Open Access Journals (Sweden)

    Juan Mulato Brito

    2013-12-01

    Full Text Available The husk tomato (Physalis ixocarpa Brot. is widely cultivated in central Mexico, and may be grown in countries with a temperate climate. The experiment was set up during the dry period of the year (average weekly temperature 17-22°C in the State of Morelos, Mexico, using the cv. 'Rendidora' in loamy clay soil and furrow irrigation. The roots were investigated by the pinboard method modified by Garcia Blancas and Grajeda Gómez (in print, partly adapted by us for quantitative estimation of root systems. Two plants were investigated every second week. They had a well developed tap root. Most of their lateral roots were found in the superficial soil layer, 0-20 cm. The root dry mass was also concentrated near the central axis of the plant. The majority of root apices were, however, found in the soil cylinders 10-40 em from the central axis. During the senescence of the aerial part (14th week after emergence the root system lost a large part of its small roots. The modification of the pinboard method, by Garcia Blancas and Grajeda Gómez (in print permited us investigating the root systems with very simple tools, in situ.

  19. Properties of Plasma Membrane from Pea Root Seedlings under Altered Gravity

    Science.gov (United States)

    Klymchuk, D.; Baranenko, V.; Vorobyova, T. V.; Kurylenko, I.; Chyzhykova, O.; Dubovoy, V.

    In this study, the properties of pea (Pisum sativum L.) plasma membrane were examined to determine how the membrane structure and functions are regulated in response to clinorotation (2 rev/min) conditions. Membrane preparations enriched by plasma membrane vesicles were obtained by aqueous two-phase partitioning from 6-day seedling roots. The specific characteristics of H^+-ATPase, lípid composition and peroxidation intensity as well as fluidity of lipid bilayer were analysed. ATP hydrolytic activity was inhibited by ortovanadate and was insensitive to aside and nitrate in sealed plasma membrane vesicles isolated from both clinorotated and control seedlings. Plasma membrane vesicles from clinorotated seedlings in comparison to controls were characterised by increase in the total lipid/protein ratio, ATP hydrolytic activity and intensifying of lipid peroxidation. Sitosterol and campesterol were the predominant free sterol species. Clinorotated seedlings contained a slightly higher level of unsaturated fatty acid than controls. Plasma membrane vesicles were labelled with pyrene and fluorescence originating from monomeric (I_M) molecules and excimeric (I_E) aggregates were measured. The calculated I_E/I_M values were higher in clinorotated seedlings compared with controls reflecting the reduction in membrane microviscosity. The involvement of the changes in plasma membrane lipid content and composition, fluidity and H^+-ATPase activity in response of pea seedlings to altered gravity is discussed.

  20. Phosphate-dependent root system architecture responses to salt stress

    KAUST Repository

    Kawa, Dorota

    2016-05-20

    Nutrient availability and salinity of the soil affect growth and development of plant roots. Here, we describe how phosphate availability affects root system architecture (RSA) of Arabidopsis and how phosphate levels modulate responses of the root to salt stress. Phosphate (Pi) starvation reduced main root length and increased the number of lateral roots of Arabidopsis Col-0 seedlings. In combination with salt, low Pi dampened the inhibiting effect of mild salt stress (75mM) on all measured RSA components. At higher NaCl concentrations, the Pi deprivation response prevailed over the salt stress only for lateral root elongation. The Pi deprivation response of lateral roots appeared to be oppositely affected by abscisic acid (ABA) signaling compared to the salt stress response. Natural variation in the response to the combination treatment of salt and Pi starvation within 330 Arabidopsis accessions could be grouped into four response patterns. When exposed to double stress, in general lateral roots prioritized responses to salt, while the effect on main root traits was additive. Interestingly, these patterns were not identical for all accessions studied and multiple strategies to integrate the signals from Pi deprivation and salinity were identified. By Genome Wide Association Mapping (GWAS) 13 genomic loci were identified as putative factors integrating responses to salt stress and Pi starvation. From our experiments, we conclude that Pi starvation interferes with salt responses mainly at the level of lateral roots and that large natural variation exists in the available genetic repertoire of accessions to handle the combination of stresses.

  1. Characterization of alfalfa populations contrasting for root system architecture (RSA)

    Science.gov (United States)

    The root system architecture affects the capacity for nutrient and water uptake thus impacting biomass yield production and may contribute to the persistence of perennial plants. The objectives of this study were to phenotype the roots of three alfalfa populations and identify differences between di...

  2. Glaucoma Alters the Circadian Timing System

    OpenAIRE

    Drouyer, Elise; Dkhissi-Benyahya, Ouria; Chiquet, Christophe; WoldeMussie, Elizabeth; Ruiz, Guadalupe; Wheeler, Larry A.; Denis, Philippe; Cooper, Howard M.

    2008-01-01

    Glaucoma is a widespread ocular disease and major cause of blindness characterized by progressive, irreversible damage of the optic nerve. Although the degenerative loss of retinal ganglion cells (RGC) and visual deficits associated with glaucoma have been extensively studied, we hypothesize that glaucoma will also lead to alteration of the circadian timing system. Circadian and non-visual responses to light are mediated by a specialized subset of melanopsin expressing RGCs that provide photi...

  3. Accounting Carbon Storage in Decaying Root Systems of Harvested Forests

    OpenAIRE

    Wang, G. Geoff; Van Lear, David H.; Hu, Huifeng; Kapeluck, Peter R.

    2011-01-01

    Decaying root systems of harvested trees can be a significant component of belowground carbon storage, especially in intensively managed forests where harvest occurs repeatedly in relatively short rotations. Based on destructive sampling of root systems of harvested loblolly pine trees, we estimated that root systems contained about 32% (17.2 Mg ha−1) at the time of harvest, and about 13% (6.1 Mg ha−1) of the soil organic carbon 10 years later. Based on the published roundwood output data, we...

  4. Symmetries of the octonionic root system of E8

    International Nuclear Information System (INIS)

    Octonionic root system of E8 is decomposed as the 9 sets of Hurwitz integers, each set satisfying the binary tetrahedral group structure, and the 12 sets of quaternionic units, each set obeying the dicyclic group structure of order 12. This fact is used to prove that the automorphism group of the octonionic root system of E7 is the finite subgroup of G2, of order 12096; an explicit 7 x 7 matrix realization of which is constructed. Possible use of the octonionic representation of the E6 root system as orbifolds and the relevance of the binary tetrahedral structures with the statistical mechanics models are suggested. (author). 16 refs, 6 figs

  5. Artificial Root Exudate System (ARES): a field approach to simulate tree root exudation in soils

    Science.gov (United States)

    Lopez-Sangil, Luis; Estradera-Gumbau, Eduard; George, Charles; Sayer, Emma

    2016-04-01

    The exudation of labile solutes by fine roots represents an important strategy for plants to promote soil nutrient availability in terrestrial ecosystems. Compounds exuded by roots (mainly sugars, carboxylic and amino acids) provide energy to soil microbes, thus priming the mineralization of soil organic matter (SOM) and the consequent release of inorganic nutrients into the rhizosphere. Studies in several forest ecosystems suggest that tree root exudates represent 1 to 10% of the total photoassimilated C, with exudation rates increasing markedly under elevated CO2 scenarios. Despite their importance in ecosystem functioning, we know little about how tree root exudation affect soil carbon dynamics in situ. This is mainly because there has been no viable method to experimentally control inputs of root exudates at field scale. Here, I present a method to apply artificial root exudates below the soil surface in small field plots. The artificial root exudate system (ARES) consists of a water container with a mixture of labile carbon solutes (mimicking tree root exudate rates and composition), which feeds a system of drip-tips covering an area of 1 m2. The tips are evenly distributed every 20 cm and inserted 4-cm into the soil with minimal disturbance. The system is regulated by a mechanical timer, such that artificial root exudate solution can be applied at frequent, regular daily intervals. We tested ARES from April to September 2015 (growing season) within a leaf-litter manipulation experiment ongoing in temperate deciduous woodland in the UK. Soil respiration was measured monthly, and soil samples were taken at the end of the growing season for PLFA, enzymatic activity and nutrient analyses. First results show a very rapid mineralization of the root exudate compounds and, interestingly, long-term increases in SOM respiration, with negligible effects on soil moisture levels. Large positive priming effects (2.5-fold increase in soil respiration during the growing

  6. Effect of localized nitrogen availability to soybean half-root systems on photosynthate partitioning to roots and nodules

    International Nuclear Information System (INIS)

    Soybean (Glycine max [L.] Merr. cv Davis) was grown in a split-root growth system designed to maintain control of the root atmosphere. Two experiments were conducted to examine how 80% Ar:20%, O2 (Ar:O2) and air (Air) atmospheres affected N assimilation (NH4NO3 and N2 fixation) and the partitioning of photosynthate to roots and nodules. Application of NH4NO3 to nonnodulated half-root systems enhanced root growth and root respiration at the site of application. A second experiment applied Ar:O2 or air to the two sides of nodulated soybean half-root systems for 11 days in the following combinations: (a) Air to both sides (Air/Air); (b) Air to one side, Ar:O2 to the other (Air/Ar:O2), and (c) Ar:O2 to both sides (Ar:O2/Ar:O2). Results indicated that dry matter and current photosynthate (14C) were selectively partitioned to nodules and roots where N2 was available. Both root and nodule growth on the Air side of Air/Ar:O2 plants was significantly greater than the Ar:O2 side. The relative partitioning of carbon and current photosynthate between roots and nodules on a half-root system was also affected by N2 availability. The Ar:O2 sides partitioned relatively more current photosynthate to roots (57%) than nodules (43%), while N2-fixing root systems partitioned 36 and 64% of the carbon to roots and nodules, respectively. The Ar:O2 atmosphere decreased root and nodule respiration by 80% and nitrogenase activity by 85% compared to half-root systems in Air while specific nitrogenase activity in Ar:O2 was 50% of nodules supplied Air. Results indicated that nitrogen assimilation, whether from N2 fixation or inorganic sources, had a localized effect on root development

  7. Optimising root system hydraulic architectures for water uptake

    Science.gov (United States)

    Meunier, Félicien; Couvreur, Valentin; Draye, Xavier; Javaux, Mathieu

    2015-04-01

    In this study we started from local hydraulic analysis of idealized root systems to develop a mathematical framework necessary for the understanding of global root systems behaviors. The underlying assumption of this study was that the plant is naturally optimised for the water uptake. The root system is thus a pipe network dedicated to the capture and transport of water. The main objective of the present research is to explain the fitness of major types of root architectures to their environment. In a first step, we developed links between local hydraulic properties and macroscopic parameters of (un)branched roots. The outcome of such an approach were functions of apparent conductance of entire root system and uptake distribution along the roots. We compared our development with some allometric scaling laws for the root water uptake: under the same simplifying assumptions we were able to obtain the same results and even to expand them to more physiological cases. Using empirical data of measured root conductance, we were also able to fit extremely well the data-set with this model. In a second stage we used generic architecture parameters and an existent root growth model to generate various types of root systems (from fibrous to tap). We combined both sides (hydraulic and architecture) then to maximize under a volume constraint either apparent conductance of root systems or the soil volume explored by active roots during the plant growth period. This approach has led to the sensitive parameters of the macroscopic parameters (conductance and location of the water uptake) of each single plant selected for this study. Scientific questions such as: "What is the optimal sowing density of a given hydraulic architecture ?" or "Which plant traits can we change to better explore the soil domain ?" can be also addressed with this approach: some potential applications are illustrated. The next (and ultimate phase) will be to validate our conclusions with real architectures

  8. Microcystin-LR induces abnormal root development by altering microtubule organization in tissue-cultured common reed (Phragmites australis) plantlets.

    Science.gov (United States)

    Máthé, Csaba; Beyer, Dániel; Erdodi, Ferenc; Serfozo, Zoltán; Székvölgyi, Lóránt; Vasas, Gábor; M-Hamvas, Márta; Jámbrik, Katalin; Gonda, Sándor; Kiss, Andrea; Szigeti, Zsuzsa M; Surányi, Gyula

    2009-05-01

    Microcystin-LR (MC-LR) is a heptapeptide cyanotoxin, known to be a potent inhibitor of type 1 and 2A protein phosphatases in eukaryotes. Our aim was to investigate the effect of MC-LR on the organization of microtubules and mitotic chromatin in relation to its possible effects on cell and whole organ morphology in roots of common reed (Phragmites australis). P. australis is a widespread freshwater and brackish water aquatic macrophyte, frequently exposed to phytotoxins in eutrophic waters. Reed plantlets regenerated from embryogenic calli were treated with 0.001-40 microg ml(-1) (0.001-40.2 microM) MC-LR for 2-20 days. At 0.5 microg ml(-1) MC-LR and at higher cyanotoxin concentrations, the inhibition of protein phosphatase activity by MC-LR induced alterations in reed root growth and morphology, including abnormal lateral root development and the radial swelling of cells in the elongation zone of primary and lateral roots. Both short-term (2-5 days) and long-term (10-20 days) of cyanotoxin treatment induced microtubule disruption in meristems and in the elongation and differentiation zones. Microtubule disruption was accompanied by root cell shape alteration. At concentrations of 0.5-5 microg ml(-1), MC-LR increased mitotic index at long-term exposure and induced the increase of the percentage of meristematic cells in prophase as well as telophase and cytokinesis of late mitosis. High cyanotoxin concentrations (10-40 microg ml(-1)) inhibited mitosis at as short as 2 days of exposure. The alteration of microtubule organization was observed in mitotic cells at all exposure periods studied, at cyanotoxin concentrations of 0.5-40 microg ml(-1). MC-LR induced spindle anomalies at the metaphase-anaphase transition, the formation of asymmetric anaphase spindles and abnormal sister chromatid separation. This paper reports for the first time that MC-LR induces cytoskeletal changes that lead to alterations of root architecture and development in common reed and generally, in

  9. Immune system alterations in amyotrophic lateral sclerosis

    DEFF Research Database (Denmark)

    Hovden, H; Frederiksen, J L; Pedersen, S W

    2013-01-01

    Amyotrophic lateral sclerosis is a disease of which the underlying cause and pathogenesis are unknown. Cumulatative data clearly indicates an active participation by the immune system in the disease. An increasingly recognized theory suggests a non-cell autonomous mechanism, meaning that multiple...... cells working together are necessary for the pathogenesis of the disease. Observed immune system alterations could indicate an active participation in this mechanism. Damaged motor neurons are able to activate microglia, astrocytes and the complement system, which further can influence each other and...... contribute to neurodegeneration. Infiltrating peripheral immune cells appears to correlate with disease progression, but their significance and composition is unclear. The deleterious effects of this collaborating system of cells appear to outweigh the protective aspects, and revealing this interplay might...

  10. Weyl group orbits on Kac–Moody root systems

    International Nuclear Information System (INIS)

    Let D be a Dynkin diagram and let Π={α1,...,αℓ} be the simple roots of the corresponding Kac–Moody root system. Let h denote the Cartan subalgebra, let W denote the Weyl group and let Δ denote the set of all roots. The action of W on h, and hence on Δ, is the discretization of the action of the Kac–Moody algebra. Understanding the orbit structure of W on Δ is crucial for many physical applications. We show that for i≠j, the simple roots αi and αj are in the same W–orbit if and only if vertices i and j in the Dynkin diagram corresponding to αi and αj are connected by a path consisting only of single edges. We introduce the notion of ‘the Cayley graph P of the Weyl group action on real roots’ whose connected components are in one-to-one correspondence with the disjoint orbits of W. For a symmetric hyperbolic generalized Cartan matrix A of rank ⩾4 we prove that any two real roots of the same length lie in the same W–orbit. We show that if the generalized Cartan matrix A contains zeros, then there are simple roots that are stabilized by simple root reflections in W, that is, W does not act simply transitively on real roots. We give sufficient conditions in terms of the generalized Cartan matrix A (equivalently D) for W to stabilize a real root. Using symmetry properties of the imaginary light cone in the hyperbolic case, we deduce that the number of W–orbits on imaginary roots on a hyperboloid of fixed radius is bounded above by the number of root lattice points on the hyperboloid that intersect the closure of the fundamental region for W. (paper)

  11. Crop systems and plant roots can modify the soil water holding capacity

    Science.gov (United States)

    Doussan, Claude; Cousin, Isabelle; Berard, Annette; Chabbi, Abad; Legendre, Laurent; Czarnes, Sonia; Toussaint, Bruce; Ruy, Stéphane

    2015-04-01

    At the interface between atmosphere and deep sub-soil, the root zone plays a major role in regulating the flow of water between major compartments: groundwater / surface / atmosphere (drainage, runoff, evapotranspiration). This role of soil as regulator/control of water fluxes, but also as a supporting medium to plant growth, is strongly dependent on the hydric properties of the soil. In turn, the plant roots growing in the soil can change its structure; both in the plow layer and in the deeper horizons and, therefore, could change the soil properties, particularly hydric properties. Such root-related alteration of soil properties can be linked to direct effect of roots such as soil perforation during growth, aggregation of soil particles or indirect effects such as the release of exudates by roots that could modify the properties of water or of soil particles. On an another hand, the rhizosphere, the zone around roots influenced by the activity of root and associated microorganisms, could have a high influence on hydric properties, particularly the water retention. To test if crops and plant roots rhizosphere may have a significant effect on water retention, we conducted various experiment from laboratory to field scales. In the lab, we tested different soil and species for rhizospheric effect on soil water retention. Variation in available water content (AWC) between bulk and rhizospheric soil varied from non-significant to a significant increase (to about 16% increase) depending on plant species and soil type. In the field, the alteration of water retention by root systems was tested in different pedological settings for a Maize crop inoculated or not with the bacteria Azospirillum spp., known to alter root structure, growth and morphology. Again, a range of variation in AWC was evidenced, with significant increase (~30%) in some soil types, but more linked to innoculated/non-innoculated plants rather than to a difference between rhizospheric and bulk soil

  12. KATP channel subunits in rat dorsal root ganglia: alterations by painful axotomy

    Directory of Open Access Journals (Sweden)

    Gemes Geza

    2010-01-01

    Full Text Available Abstract Background ATP-sensitive potassium (KATP channels in neurons mediate neuroprotection, they regulate membrane excitability, and they control neurotransmitter release. Because loss of DRG neuronal KATP currents is involved in the pathophysiology of pain after peripheral nerve injury, we characterized the distribution of the KATP channel subunits in rat DRG, and determined their alterations by painful axotomy using RT-PCR, immunohistochemistry and electron microscopy. Results PCR demonstrated Kir6.1, Kir6.2, SUR1 and SUR2 transcripts in control DRG neurons. Protein expression for all but Kir6.1 was confirmed by Western blots and immunohistochemistry. Immunostaining of these subunits was identified by fluorescent and confocal microscopy in plasmalemmal and nuclear membranes, in the cytosol, along the peripheral fibers, and in satellite glial cells. Kir6.2 co-localized with SUR1 subunits. Kir6.2, SUR1, and SUR2 subunits were identified in neuronal subpopulations, categorized by positive or negative NF200 or CGRP staining. KATP current recorded in excised patches was blocked by glybenclamide, but preincubation with antibody against SUR1 abolished this blocking effect of glybenclamide, confirming that the antibody targets the SUR1 protein in the neuronal plasmalemmal membrane. In the myelinated nerve fibers we observed anti-SUR1 immunostaining in regularly spaced funneled-shaped structures. These structures were identified by electron microscopy as Schmidt-Lanterman incisures (SLI formed by the Schwann cells. Immunostaining against SUR1 and Kir6.2 colocalized with anti-Caspr at paranodal sites. DRG excised from rats made hyperalgesic by spinal nerve ligation exhibited similar staining against Kir6.2, SUR1 or SUR2 as DRG from controls, but showed decreased prevalence of SUR1 immunofluorescent NF200 positive neurons. In DRG and dorsal roots proximal to axotomy SLI were smaller and showed decreased SUR1 immunofluorescence. Conclusions We

  13. Aqueous root extract ofLecaniodiscus cupanioides restores the alterations in testicular parameters of sexually impaired male rats

    Institute of Scientific and Technical Information of China (English)

    Quadri O Nurudeen; Taofeek O Ajiboye

    2012-01-01

    Objective:This study aimed to investigate the effects of aqueous root extract ofLecaniodiscus cupanioides (L.cupanioides)on the alterations in the testicular parameters of paroxetine-treated rats.Methods:Group A rats which is the control received distilled water orally for 5 d. Groups B, C, D, E and F consisted of paroxetine-induced sexual dysfunction rats. In addition, Groups C, D, E and F rats were orally treated with 25, 50 and 100 mg/kg body weight of the extract and 7.14 mg/kg body weight of PowMax once daily for 5 d respectively.Results:Paroxetine-induced sexual dysfunction resulted into significant (P<0.05) reduction in the levels of testicular protein, sialic acid, glycogen and cholesterols. These decrease were dose dependently reversed by aqueous root extract ofL. cupanioides. The decrease in the specific activities of acid and alkaline phosphatases, lactate dehydrogenase and gamma-glutamyl transferase in the testes of paroxetine-treated rats were significantly (P<0.05) reversed. Testicular testosterone level decreased significantly (P<0.05) in sexually impaired rats. This decrease was significantly prevented by aqueous root extract ofL. cupanioides. All these alterations brought about by the administration of the extract (25 and 50 mg/kg body weight) compared significantly (P<0.05) with the reference drug, while the 100 mg/kg body weight of the extract compared significantly (P<0.05) with the control.Conclusions:The results of this study showed that aqueous root extract ofL. cupanioidesrestored the alterations in the testicular function parameters of sexually impaired rats. Thus supporting the use of the plants in the management of sexual dysfunction in the folkloric medicine of Nigeria.

  14. Glaucoma alters the circadian timing system.

    Science.gov (United States)

    Drouyer, Elise; Dkhissi-Benyahya, Ouria; Chiquet, Christophe; WoldeMussie, Elizabeth; Ruiz, Guadalupe; Wheeler, Larry A; Denis, Philippe; Cooper, Howard M

    2008-01-01

    Glaucoma is a widespread ocular disease and major cause of blindness characterized by progressive, irreversible damage of the optic nerve. Although the degenerative loss of retinal ganglion cells (RGC) and visual deficits associated with glaucoma have been extensively studied, we hypothesize that glaucoma will also lead to alteration of the circadian timing system. Circadian and non-visual responses to light are mediated by a specialized subset of melanopsin expressing RGCs that provide photic input to mammalian endogenous clock in the suprachiasmatic nucleus (SCN). In order to explore the molecular, anatomical and functional consequences of glaucoma we used a rodent model of chronic ocular hypertension, a primary causal factor of the pathology. Quantitative analysis of retinal projections using sensitive anterograde tracing demonstrates a significant reduction (approximately 50-70%) of RGC axon terminals in all visual and non-visual structures and notably in the SCN. The capacity of glaucomatous rats to entrain to light was challenged by exposure to successive shifts of the light dark (LD) cycle associated with step-wise decreases in light intensity. Although glaucomatous rats are able to entrain their locomotor activity to the LD cycle at all light levels, they require more time to re-adjust to a shifted LD cycle and show significantly greater variability in activity onsets in comparison with normal rats. Quantitative PCR reveals the novel finding that melanopsin as well as rod and cone opsin mRNAs are significantly reduced in glaucomatous retinas. Our findings demonstrate that glaucoma impacts on all these aspects of the circadian timing system. In light of these results, the classical view of glaucoma as pathology unique to the visual system should be extended to include anatomical and functional alterations of the circadian timing system. PMID:19079596

  15. Glaucoma Alters the Circadian Timing System

    Science.gov (United States)

    Drouyer, Elise; Dkhissi-Benyahya, Ouria; Chiquet, Christophe; WoldeMussie, Elizabeth; Ruiz, Guadalupe; Wheeler, Larry A.; Denis, Philippe; Cooper, Howard M.

    2008-01-01

    Glaucoma is a widespread ocular disease and major cause of blindness characterized by progressive, irreversible damage of the optic nerve. Although the degenerative loss of retinal ganglion cells (RGC) and visual deficits associated with glaucoma have been extensively studied, we hypothesize that glaucoma will also lead to alteration of the circadian timing system. Circadian and non-visual responses to light are mediated by a specialized subset of melanopsin expressing RGCs that provide photic input to mammalian endogenous clock in the suprachiasmatic nucleus (SCN). In order to explore the molecular, anatomical and functional consequences of glaucoma we used a rodent model of chronic ocular hypertension, a primary causal factor of the pathology. Quantitative analysis of retinal projections using sensitive anterograde tracing demonstrates a significant reduction (∼50–70%) of RGC axon terminals in all visual and non-visual structures and notably in the SCN. The capacity of glaucomatous rats to entrain to light was challenged by exposure to successive shifts of the light dark (LD) cycle associated with step-wise decreases in light intensity. Although glaucomatous rats are able to entrain their locomotor activity to the LD cycle at all light levels, they require more time to re-adjust to a shifted LD cycle and show significantly greater variability in activity onsets in comparison with normal rats. Quantitative PCR reveals the novel finding that melanopsin as well as rod and cone opsin mRNAs are significantly reduced in glaucomatous retinas. Our findings demonstrate that glaucoma impacts on all these aspects of the circadian timing system. In light of these results, the classical view of glaucoma as pathology unique to the visual system should be extended to include anatomical and functional alterations of the circadian timing system. PMID:19079596

  16. Plant growth-promoting rhizobacteria and root system functioning

    Directory of Open Access Journals (Sweden)

    Jordan eVacheron

    2013-09-01

    Full Text Available The rhizosphere supports the development and activity of a huge and diversified microbial community, including microorganisms capable to promote plant growth. Among the latter, Plant Growth-Promoting Rhizobacteria (PGPR colonize roots of monocots and dicots, and enhance plant growth by direct and indirect mechanisms. Modification of root system architecture by PGPR implicates the production of phytohormones and other signals that lead, mostly, to enhanced lateral root branching and development of root hairs. PGPR also modify root functioning, improve plant nutrition and influence the physiology of the whole plant. Recent results provided first clues as to how PGPR signals could trigger these plant responses. Whether local and/or systemic, the plant molecular pathways involved remain often unknown. From an ecological point of view, it emerged that PGPR form coherent functional groups, whose rhizosphere ecology is influenced by a myriad of abiotic and biotic factors in natural and agricultural soils, and these factors can in turn modulate PGPR effects on roots. In this paper, we address novel knowledge and gaps on PGPR modes of action and signals, and highlight recent progress on the links between plant morphological and physiological effects induced by PGPR. We also show the importance of taking into account the size, diversity and gene expression patterns of PGPR assemblages in the rhizosphere to better understand their impact on plant growth and functioning. Integrating mechanistic and ecological knowledge on PGPR populations in soil will be a prerequisite to develop novel management strategies for sustainable agriculture.

  17. Moth outbreaks alter root-associated fungal communities in subarctic mountain birch forests.

    Science.gov (United States)

    Saravesi, Karita; Aikio, Sami; Wäli, Piippa R; Ruotsalainen, Anna Liisa; Kaukonen, Maarit; Huusko, Karoliina; Suokas, Marko; Brown, Shawn P; Jumpponen, Ari; Tuomi, Juha; Markkola, Annamari

    2015-05-01

    Climate change has important implications on the abundance and range of insect pests in forest ecosystems. We studied responses of root-associated fungal communities to defoliation of mountain birch hosts by a massive geometrid moth outbreak through 454 pyrosequencing of tagged amplicons of the ITS2 rDNA region. We compared fungal diversity and community composition at three levels of moth defoliation (intact control, full defoliation in one season, full defoliation in two or more seasons), replicated in three localities. Defoliation caused dramatic shifts in functional and taxonomic community composition of root-associated fungi. Differentially defoliated mountain birch roots harbored distinct fungal communities, which correlated with increasing soil nutrients and decreasing amount of host trees with green foliar mass. Ectomycorrhizal fungi (EMF) abundance and richness declined by 70-80 % with increasing defoliation intensity, while saprotrophic and endophytic fungi seemed to benefit from defoliation. Moth herbivory also reduced dominance of Basidiomycota in the roots due to loss of basidiomycete EMF and increases in functionally unknown Ascomycota. Our results demonstrate the top-down control of belowground fungal communities by aboveground herbivory and suggest a marked reduction in the carbon flow from plants to soil fungi following defoliation. These results are among the first to provide evidence on cascading effects of natural herbivory on tree root-associated fungi at an ecosystem scale. PMID:25687127

  18. Cadmium-induced functional and ultrastructural alterations in roots of two transgenic cotton cultivars

    International Nuclear Information System (INIS)

    The toxic effect of cadmium (Cd) at increasing concentrations was studied with special attention being given to the root morphological and ultrastructural changes in two transgenic cotton cultivars viz. BR001 and GK30 and their wild relative viz. Coker 312. In comparison to their respective controls, low concentration (10 and 100 μM) of Cd greatly stimulated seed germination, while it was inhibited by highest concentration of Cd (1000 μM) in case of two transgenic cultivars. However, in Coker 312 the seed germination percentage progressively decreased over the control at all Cd levels. Various physiological and morphological parameters of the root and whole plant in both transgenic cotton cultivars and their relative wild cotton genotype respond differently towards the Cd toxicity. Bioavailability of Cd was concentration-dependent where seedling root captured more Cd as compared to shoot. BR001 accumulated more Cd followed by GK30, while Coker 312 was less Cd accumulator. The ultrastructural modifications in the root tip cells of both the transgenic cotton cultivars and their wild relative were also dose-dependent. With the increase in Cd levels, the fine structures of their root cells also invariably changed. Increase in plasmolysis of the plasma membrane, greater number of nucleoli and vacuoles and enlarged vacuoles could be observed in both transgenic cotton cultivars. In comparison to them, Coker 312 showed relatively well developed ultrastructures of the root tips except enlarged vacuoles and greater number of mitochondria. Moreover, the accumulation of Cd in the form of electron dense granules and crystals both in vacuoles and attached to cell walls were visible in both transgenic cotton cultivars and their wild relative. These results suggest that both transgenic cotton cultivars and their wild relative cotton genotype responded positively towards Cd stress at seedling stage, the internal Cd-detoxification might be through apoplastic and symplastic binding

  19. Cadmium-induced functional and ultrastructural alterations in roots of two transgenic cotton cultivars

    Energy Technology Data Exchange (ETDEWEB)

    Daud, M.K.; Sun, Yuqiang; Dawood, M. [Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029 (China); Hayat, Y. [Institute of Bioinformatics, Zhejiang University, Hangzhou 310029 (China); Variath, M.T.; Wu Yuxiang [Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029 (China); Raziuddin [Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029 (China); Plant Breeding and Genetics Department, NWFP Agricultural University Peshawar, Peshawar (Pakistan); Mishkat, Ullah [Zoological Sciences Division, Pakistan Museum of Natural History, Garden Avenue, Shakarparian, Islamabad 44000 (Pakistan); Salahuddin [District Agriculture Extension Offices, Bannu Road, Dera Ismail Khan (NWFP) (Pakistan); Najeeb, Ullah [Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029 (China); Zhu, Shuijin [Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029 (China)], E-mail: shjzhu@zju.edu.cn

    2009-01-15

    The toxic effect of cadmium (Cd) at increasing concentrations was studied with special attention being given to the root morphological and ultrastructural changes in two transgenic cotton cultivars viz. BR001 and GK30 and their wild relative viz. Coker 312. In comparison to their respective controls, low concentration (10 and 100 {mu}M) of Cd greatly stimulated seed germination, while it was inhibited by highest concentration of Cd (1000 {mu}M) in case of two transgenic cultivars. However, in Coker 312 the seed germination percentage progressively decreased over the control at all Cd levels. Various physiological and morphological parameters of the root and whole plant in both transgenic cotton cultivars and their relative wild cotton genotype respond differently towards the Cd toxicity. Bioavailability of Cd was concentration-dependent where seedling root captured more Cd as compared to shoot. BR001 accumulated more Cd followed by GK30, while Coker 312 was less Cd accumulator. The ultrastructural modifications in the root tip cells of both the transgenic cotton cultivars and their wild relative were also dose-dependent. With the increase in Cd levels, the fine structures of their root cells also invariably changed. Increase in plasmolysis of the plasma membrane, greater number of nucleoli and vacuoles and enlarged vacuoles could be observed in both transgenic cotton cultivars. In comparison to them, Coker 312 showed relatively well developed ultrastructures of the root tips except enlarged vacuoles and greater number of mitochondria. Moreover, the accumulation of Cd in the form of electron dense granules and crystals both in vacuoles and attached to cell walls were visible in both transgenic cotton cultivars and their wild relative. These results suggest that both transgenic cotton cultivars and their wild relative cotton genotype responded positively towards Cd stress at seedling stage, the internal Cd-detoxification might be through apoplastic and symplastic

  20. The Building of Grass-roots Agricultural Technology Extension System

    Institute of Scientific and Technical Information of China (English)

    Wen; YANG; Jian; HUANG

    2013-01-01

    Based on the survey of 154 farmers in Guiyang City, we analyze the basic situation of building of grass-roots agricultural technology extension system in Guiyang City. Then we point out some problems in the building of grass-roots agricultural technology extension system in Guiyang City: the function of grass-roots agricultural technology extension center weakens; the content of agricultural technology extension is difficult to adapt to farmers’ needs for technology; the extension mode of agricultural technology departments does not adapt to the needs of modern agriculture. In order to perfect the building of grass-roots agricultural technology extension system, the countermeasures and recommendations are put forth as follows: strengthening the input of funds, and ensuring that the basic work of public welfare agricultural technology extension is smoothly carried out; innovating upon the system, and improving the function of grass-roots agricultural technology extension center; implementing management on agricultural technology extension personnel’s performance, and promoting the extension efficiency; strengthening the building of extension team in rural areas, and cultivating high-quality agricultural technology extension personnel; exploring the advanced service mode to meet farmers’ needs.

  1. Identifying root exudates in field contaminated soil systems

    Science.gov (United States)

    Rosenfeld, C.; Martinez, C. E.

    2012-12-01

    Carbon (C) compounds exuded from plant roots comprise a significant and reactive fraction of belowground C pools. These exudates substantially alter the soil directly surrounding plant roots and play a vital role in the global C cycle, soil ecology, and ecosystem mobility of both nutrients and contaminants. In soils, the solubility and bioavailability of metals such as iron, zinc, and cadmium are intricately linked to the quantity and chemical characteristics of the C compounds allocated to the soil by plants. Cadmium (Cd), a toxic heavy metal, forms stronger bonds with reduced S- and N-containing compounds than with carboxylic acids, which may influence exudate composition in hyperaccumulator and tolerant plants grown in Cd contaminated soils. We hypothesize that hyperaccumulator plants will exude a larger quantity of aromatic N and chelating di- and tri-carboxylic acid molecules, while plants that exclude heavy metals from uptake will exude a larger proportion of reduced S containing molecules. This study examines how a variety of techniques can measure the low concentrations of complex organic mixtures exuded by hyperaccumulator and non-hyperaccumulator plants grown in Cd-contaminated soils. Two congeneric plants, Thlaspi caerulescens (Ganges ecotype), and T. caerulescens (Prayon ecotype) were grown in 0.5 kg pots filled with Cd-contaminated field soils from Chicago, IL. Field soils were contaminated as a result of the application of contaminated biosolids in the 1960's and 1970's. Pots were fitted for rhizon soil moisture samplers, micro-lysimeters developed for in situ collection of small volumes in unsaturated soils, prior to planting. Plants were grown for 8 weeks before exudate collection. After the 8 weeks of growth, a pulse-chase isotope tracer method using the C stable isotope, 13C, was employed to differentiate plant-derived compounds from background soil and microbial-derived compounds. Plants were placed in a CO2 impermeable chamber, and the soil

  2. The Arabidopsis thaliana CLAVATA3/EMBRYO-SURROUNDING REGION 26 (CLE26) peptide is able to alter root architecture of Solanum lycopersicum and Brassica napus.

    Science.gov (United States)

    Czyzewicz, Nathan; De Smet, Ive

    2016-01-01

    Optimal development of root architecture is vital to the structure and nutrient absorption capabilities of any plant. We recently demonstrated that AtCLE26 regulates A. thaliana root architecture development, possibly by altering auxin distribution to the root apical meristem via inhibition of protophloem development. In addition, we showed that AtCLE26 application is able to induce a root architectural change in the monocots Brachypodium distachyon and Triticum aestivum. Here, we showed that application of the synthetic AtCLE26 peptide similarly affects other important agricultural species, such as Brassica napus and Solanum lycopersicum. PMID:26669515

  3. Cadmium-induced Functional and Ultrastructural Alterations in Roots of Two Transgenic Cotton Cultivars

    Institute of Scientific and Technical Information of China (English)

    DAUD M K; SUN Yu-qiang; ZHU Shui-jin

    2008-01-01

    @@ The toxic effect of cadmium (Cd) at increasing concentrations has been studied with special attention being given to root morphological and ultrastructural changes in two transgenic cotton cultivars viz.BR001 and GK30 and their wild relative cotton genotype viz.Coker 312.In comparison to their respective controls,low concentration (10 and 100 M) of Cd greatly stimulated seed germination,while it was inhibited by highest concentration of Cd (1000 M) in case of two transgenic cultivars.

  4. Cerebroside C increases tolerance to chilling injury and alters lipid composition in wheat roots.

    Directory of Open Access Journals (Sweden)

    Hong-Xia Li

    Full Text Available Chilling tolerance was increased in seed germination and root growth of wheat seedlings grown in media containing 20 µg/mL cerebroside C (CC, isolated from the endophytic Phyllosticta sp. TG78. Seeds treated with 20 µg/mL CC at 4 °C expressed the higher germination rate (77.78%, potential (23.46%, index (3.44 and the shorter germination time (6.19 d; root growth was also significantly improved by 13.76% in length, 13.44% in fresh weight and 6.88% in dry mass compared to controls. During the cultivation process at 4 °C for three days and the followed 24 h at 25 °C, lipid peroxidation, expressed by malondialdehyde (MDA content and relative membrane permeability (RMP was significantly reduced in CC-treated roots; activities of lipoxygenase (LOX, phospholipid C (PLC and phospholipid D (PLD were inhibited by 13.62-62.26%, 13.54-63.93% and 13.90-61.17%, respectively; unsaturation degree of fatty acids was enhanced through detecting the contents of CC-induced linoleic acid, linolenic acid, palmitic acid and stearic acid using GC-MS; capacities of superoxide dismutase (SOD, catalase (CAT and glutathione peroxidase (GSH-Px were individually increased by 7.69-46.06%, 3.37-37.96%, and -7.00-178.07%. These results suggest that increased chilling tolerance may be due, in part, to the reduction of lipid peroxidation and alternation of lipid composition of roots in the presence of CC.

  5. Computer Algebra Systems and Theorems on Real Roots of Polynomials

    Science.gov (United States)

    Aidoo, Anthony Y.; Manthey, Joseph L.; Ward, Kim Y.

    2010-01-01

    A computer algebra system is used to derive a theorem on the existence of roots of a quadratic equation on any bounded real interval. This is extended to a cubic polynomial. We discuss how students could be led to derive and prove these theorems. (Contains 1 figure.)

  6. On Continued Fraction Expansion of Real Roots of Polynomial Systems

    DEFF Research Database (Denmark)

    Mantzaflaris, Angelos; Mourrain, Bernard; Tsigaridas, Elias

    2011-01-01

    feasible over unbounded regions. Then, we study an algorithm to split this representation and obtain a subdivision scheme for the domain of multivariate polynomial functions. This implies a new algorithm for real root isolation, MCF, that generalizes the Continued Fraction (CF) algorithm of univariate......, corresponding to the first terms of the continued fraction expansion of the real roots. Finally, we present new complexity bounds for a simplified version of the algorithm in the bit complexity model, and also bounds in the real RAM model for a family of subdivision algorithms in terms of the real condition...... number of the system. Examples computed with our C++ implementation illustrate the practical aspects of our method....

  7. TGeoCad: an Interface between ROOT and CAD Systems

    International Nuclear Information System (INIS)

    In the simulation of High Energy Physics experiment a very high precision in the description of the detector geometry is essential to achieve the required performances. The physicists in charge of Monte Carlo Simulation of the detector need to collaborate efficiently with the engineers working at the mechanical design of the detector. Often, this collaboration is made hard by the usage of different and incompatible software. ROOT is an object-oriented C++ framework used by physicists for storing, analyzing and simulating data produced by the high-energy physics experiments while CAD (Computer-Aided Design) software is used for mechanical design in the engineering field. The necessity to improve the level of communication between physicists and engineers led to the implementation of an interface between the ROOT geometrical modeler used by the virtual Monte Carlo simulation software and the CAD systems. In this paper we describe the design and implementation of the TGeoCad Interface that has been developed to enable the use of ROOT geometrical models in several CAD systems. To achieve this goal, the ROOT geometry description is converted into STEP file format (ISO 10303), which can be imported and used by many CAD systems

  8. Traffic Root Modelling and Assignment with Intelligent Transport System

    OpenAIRE

    Kunicina, Nadezhda; Galkina, Alina; Zabasta, Anatolijs; Patlins, Antons; Kondratjevs, Kaspars

    2014-01-01

    The integration of emergency and specialized transport rooting tools in the usual traffic control paradigms is one of the opportunities offered by modern intelligent traffic control systems. The research is connected with improvement of on – line traffic control and adaptation of special traffic lighting alternatives by ITS The task can be solved with the help of modern technical methods and equipment as well as applying control paradigms of the distributed systems. The problem is solved with...

  9. Alterations of physiology and gene expression due to long-term magnesium-deficiency differ between leaves and roots of Citrus reticulata.

    Science.gov (United States)

    Jin, Xiao-Lin; Ma, Cui-Lan; Yang, Lin-Tong; Chen, Li-Song

    2016-07-01

    Seedlings of Ponkan (Citrus reticulata) were irrigated with nutrient solution containing 0 (Mg-deficiency) or 1mM MgSO4 (control) every two day for 16 weeks. Thereafter, we examined magnesium (Mg)-deficiency-induced changes in leaf and root gas exchange, total soluble proteins and gene expression. Mg-deficiency lowered leaf CO2 assimilation, and increased leaf dark respiration. However, Mg-deficient roots had lower respiration. Total soluble protein level was not significantly altered by Mg-deficiency in roots, but was lower in Mg-deficient leaves than in controls. Using cDNA-AFLP, we obtained 70 and 71 differentially expressed genes from leaves and roots. These genes mainly functioned in signal transduction, stress response, carbohydrate and energy metabolism, cell transport, cell wall and cytoskeleton metabolism, nucleic acid, and protein metabolisms. Lipid metabolism (Ca(2+) signals)-related Mg-deficiency-responsive genes were isolated only from roots (leaves). Although little difference existed in the number of Mg-deficiency-responsive genes between them both, most of these genes only presented in Mg-deficient leaves or roots, and only four genes were shared by them both. Our data clearly demonstrated that Mg-deficiency-induced alterations of physiology and gene expression greatly differed between leaves and roots. In addition, we focused our discussion on the causes for photosynthetic decline in Mg-deficient leaves and the responses of roots to Mg-deficiency. PMID:27163764

  10. Integration of root phenes revealed by intensive phenotyping of root system architecture, anatomy, and physiology in cereals

    Science.gov (United States)

    York, Larry

    2015-04-01

    Food insecurity is among the greatest challenges humanity will face in the 21st century. Agricultural production in much of the world is constrained by the natural infertility of soil which restrains crops from reaching their yield potential. In developed nations, fertilizer inputs pollute air and water and contribute to climate change and environmental degradation. In poor nations low soil fertility is a primary constraint to food security and economic development. Water is almost always limiting crop growth in any system. Increasing the acquisition efficiency of soil resources is one method by which crop yields could be increased without the use of more fertilizers or irrigation. Cereals are the most widely grown crops, both in terms of land area and in yield, so optimizing uptake efficiency of cereals is an important goal. Roots are the primary interface between plant and soil and are responsible for the uptake of soil resources. The deployment of roots in space and time comprises root system architecture (RSA). Cereal RSA is a complex phenotype that aggregates many elemental phenes (elemental units of phenotype). Integration of root phenes will be determined by interactions through their effects on soil foraging and plant metabolism. Many architectural, metabolic, and physiological root phenes have been identified in maize, including: nodal root number, nodal root growth angle, lateral root density, lateral root length, aerenchyma, cortical cell size and number, and nitrate uptake kinetics. The utility of these phenes needs confirmation in maize and in other cereals. The maize root system is composed of an embryonic root system and nodal roots that emerge in successive whorls as the plant develops, and is similar to other cereals. Current phenotyping platforms often ignore the inner whorls and instead focus on the most visible outer whorls after excavating a maize root crown from soil. Here, an intensive phenotyping platform evaluating phenes of all nodal root

  11. Quantum systems related to root systems and radial parts of Laplace operators

    OpenAIRE

    Olshanetsky, M. A.; Perelomov, A.M.

    2002-01-01

    The relation between quantum systems associated to root systems and radial parts of Laplace operators on symmetric spaces is established. From this it follows the complete integrability of some quantum systems.

  12. Segregation and Alteration of Phenolic and Aliphatic Components of Root and Leaf Litter by Detritivores and Microbes

    Science.gov (United States)

    Filley, T. R.; Altmann, J.; Szlavecz, K. A.; Kalbitz, K.; Gamblin, D.; Nierop, K.

    2012-12-01

    The physical and microbial transformation of plant detritus in the litter layer and soil is accompanied by chemical separation of progressively soluble fractions and their movement into the rhizosphere driving subsequent soil processes. We investigated the combined action of specific detritivores, microbial decay, and leaching on the chemical separation of plant aromatic and aliphatic components from root, wood, and leaf tissue using 13C-TMAH thermochemolysis. This method enabled the simultaneous analysis of hydrolyzable tannin and lignin fragments, substituted fatty acids, and condensed tannin composition and revealed process-specific chemical transformations to plant secondary compounds. Long-term incubation and field sampling demonstrated how plant residues are progressively leached of the water soluble, oxidized fragments generated through decay. The residues appeared only slightly altered, in the case of brown rot wood, or enriched in aliphatic fragments, in the case of leaf and root tissue. Water extractable fractions were always selectively dominated by polyphenolics, either as demethylated lignin or tannins, and nearly devoid of aliphatic materials, despite high concentrations in the starting materials. Additionally, for plant materials with high tannin contents, such as pine needles, consumption and passage through some arthropod guts revealed what appeared to be microbially-mediated methylation of phenols, and a loss of tannins in leachates. These findings are indications for an in-situ phenol detoxification mechanism. This research provides important information regarding the links between biochemical decay and the chemical nature of organic matter removed and remaining in the soil profile.

  13. Root systems and soil microbial biomass under no-tillage system

    Directory of Open Access Journals (Sweden)

    Venzke Filho Solismar de Paiva

    2004-01-01

    Full Text Available Some root parameters such as distribution, length, diameter and dry matter are inherent to plant species. Roots can influence microbial population during vegetative cycle through the rhizodeposits and, after senescence, integrating the soil organic matter pool. Since they represent labile substrates, especially regarding nitrogen, they can determine the rate of nutrient availability to the next crop cultivated under no-tillage (NT. The root systems of two crop species: maize (Zea mays L. cultivar Cargill 909 and soybean [Glycine max (L. Merr.] cultivar Embrapa 59, were compared in the field, and their influence on spatial distribution of the microbial C and N in a clayey-textured Typic Hapludox cultivated for 22 years under NT, at Tibagi, State of Paraná (PR, Brazil, was determined. Digital image processing and nail-plate techniques were used to evaluate 40 plots of a 80 ´ 50 ´ 3 cm soil profile. It was observed that 36% and 30% of the maize and soybeans roots, respectively, are concentrated in the 0 to 10 cm soil layer. The percent distribution of root dry matter was similar for both crops. The maize roots presented a total of 1,324 kg C ha-1 and 58 kg N ha-1, with higher root dry matter density and more roots in decomposition in the upper soil layer, decreasing with depth. The soybean roots (392 kg C ha-1 and 21 kg N ha-1 showed higher number of thinner roots and higher density per length unity compared to the maize. The maize roots enhanced microbial-C down to deeper soil layers than did the soybean roots. The microbial N presented a better correlation with the concentration of thin active roots and with roots in decomposition or in indefinite shape, possibly because of higher concentration of C and N easily assimilated by soil microorganisms.

  14. Studies on the uptake of phosphorous by corn root system

    International Nuclear Information System (INIS)

    Phosphorous absorbed by root system of corn at different depth and its distribution to various organs are studied by using 32P tracing method. The preliminary results revealed that phosphorous utilization rate in shallow application was the highest one. The pulses of 32P in various organs have been measured at mature stage of corn. There is no difference between shallow and deep applications in phosphorous absorption by kernels

  15. Comparison of Three Methods for Determination of Root Hydraulic Conductivity of Maize (Zea mays L.) Root System

    Institute of Scientific and Technical Information of China (English)

    LI Qing-ming; LIU Bin-bin

    2010-01-01

    Three techniques of root pressure probe,pressure chamber and high pressure flow meter were used to measure the hydraulic conduetivities (Lp,) of whole root systems of young maize (Zea mays L.) seedlings grown hydroponically under either drought or normal water conditions.Compared to normal water conditions,drought stress simulated by polyethylene glycol 6 000 (osmotic potential=-0.2 MPa) reduced Lp,in the root system by over 50%.It indicated that water permeability in the roots decreased significantly when plants suffered from water shortages.Moreover,there was no significant difference (P<0.05) on the Lpr values in the root systems developed under a given water stress regime among the three techniques used.Therefore,all three methods are acceptable to study the hydraulic conductivity of maize seedling root systems.We have also highlighted some of the technical limitations of each method.It can be inferred that the root pressure probe is preferable for young maize seedlings because it is subtle and has the additional ability to determine solute transport properties,but the method is time consuming.Other advantages and disadvantages of each technique are discussed in order to acquaint researchers with basic information that could contribute to their choice of an appropriate technique for future studies.

  16. Altered neuronatin expression in the rat dorsal root ganglion after sciatic nerve transection

    Directory of Open Access Journals (Sweden)

    Wu Chih-Hsien

    2010-05-01

    Full Text Available Abstract Background Several molecular changes occur following axotomy, such as gene up-regulation and down-regulation. In our previous study using Affymetrix arrays, it was found that after the axotomy of sciatic nerve, there were many novel genes with significant expression changes. Among them, neuronatin (Nnat was the one which expression was significantly up-regulated. Nnat was identified as a gene selectively expressed in neonatal brains and markedly reduced in adult brains. The present study investigated whether the expression of Nnat correlates with symptoms of neuropathic pain in adult rats with transected sciatic nerve. Methods Western blotting, immunohistochemistry, and the Randall and Selitto test were used to study the protein content, and subcellular localization of Nnat in correlation with pain-related animal behavior. Results It was found that after nerve injury, the expression of Nnat was increased in total protein extracts. Unmyelinated C-fiber and thinly myelinated A-δ fiber in adult dorsal root ganglions (DRGs were the principal sub-population of primary afferent neurons with distributed Nnat. The increased expression of Nnat and its subcellular localization were related to mechanical hyperalgesia. Conclusions The results indicated that there was significant correlation between mechanical hyperalgesia in axotomy of sciatic nerve and the increased expression of Nnat in C-fiber and A-δ fiber of adult DRG neurons.

  17. Root Zone Respiration on Hydroponically Grown Wheat Plant Systems

    Science.gov (United States)

    Soler-Crespo, R. A.; Monje, O. A.

    2010-01-01

    Root respiration is a biological phenomenon that controls plant growth and physiological development during a plant's lifespan. This process is dependent on the availability of oxygen in the system where the plant is located. In hydroponic systems, where plants are submerged in a solution containing vital nutrients but no type of soil, the availability of oxygen arises from the dissolved oxygen concentration in the solution. This oxygen concentration is dependent on the , gas-liquid interface formed on the upper surface of the liquid, as given by Henry's Law, depending on pressure and temperature conditions. Respiration rates of the plants rise as biomass and root zone increase with age. The respiration rate of Apogee wheat plants (Triticum aestivum) was measured as a function of light intensity (catalytic for photosynthesis) and CO2 concentration to determine their effect on respiration rates. To determine their effects on respiration rate and plant growth microbial communities were introduced into the system, by Innoculum. Surfactants were introduced, simulating gray-water usage in space, as another factor to determine their effect on chemical oxygen demand of microbials and on respiration rates of the plants. It is expected to see small effects from changes in CO2 concentration or light levels, and to see root respiration decrease in an exponential manner with plant age and microbial activity.

  18. Solving polynomial systems using no-root elimination blending schemes

    KAUST Repository

    Barton, Michael

    2011-12-01

    Searching for the roots of (piecewise) polynomial systems of equations is a crucial problem in computer-aided design (CAD), and an efficient solution is in strong demand. Subdivision solvers are frequently used to achieve this goal; however, the subdivision process is expensive, and a vast number of subdivisions is to be expected, especially for higher-dimensional systems. Two blending schemes that efficiently reveal domains that cannot contribute by any root, and therefore significantly reduce the number of subdivisions, are proposed. Using a simple linear blend of functions of the given polynomial system, a function is sought after to be no-root contributing, with all control points of its BernsteinBézier representation of the same sign. If such a function exists, the domain is purged away from the subdivision process. The applicability is demonstrated on several CAD benchmark problems, namely surfacesurfacesurface intersection (SSSI) and surfacecurve intersection (SCI) problems, computation of the Hausdorff distance of two planar curves, or some kinematic-inspired tasks. © 2011 Elsevier Ltd. All rights reserved.

  19. Understanding plant root system influences on soil strength and stability

    Science.gov (United States)

    Bengough, A. Glyn; Brown, Jennifer L.; Loades, Kenneth W.; Knappett, Jonathan A.; Meijer, Gertjan; Nicoll, Bruce

    2016-04-01

    Keywords: root growth, soil reinforcement, tensile strength Plant roots modify and reinforce the soil matrix, stabilising it against erosion and shallow landslides. Roots mechanically bind the soil particles together and modify the soil hydrology via water uptake, creation of biopores, and modification of the soil water-release characteristic. Key to understanding the mechanical reinforcement of soil by roots is the relation between root strength and root diameter measured for roots in any given soil horizon. Thin roots have frequently been measured to have a greater tensile strength than thick roots, but their strength is also often much more variable. We consider the factors influencing this strength-diameter relationship, considering relations between root tensile strength and root dry density, root water content, root age, and root turnover in several woody and non-woody species. The role of possible experimental artefacts and measurement techniques will be considered. Tensile strength increased generally with root age and decreased with thermal time after excision as a result of root decomposition. Single factors alone do not appear to explain the strength-diameter relationship, and both strength/stiffness and dry density may vary between different layers of tissue within a single root. Results will be discussed to consider how we can achieve a more comprehensive understanding of the variation in root biomechanical properties, and its consequences for soil reinforcement. Acknowledgements: The James Hutton Institute receives funding from the Scottish Government. AGB and JAK acknowledge part funding from EPSRC (EP/M020355/1).

  20. Statistical modeling of nitrogen-dependent modulation of root system architecture in Arabidopsis thaliana

    Institute of Scientific and Technical Information of China (English)

    Takao Araya; Takuya Kubo; Nicolaus von Wiren; Hideki Takahashi

    2016-01-01

    Plant root development is strongly affected by nutrient availability. Despite the importance of structure and function of roots in nutrient acquisition, statistical modeling approaches to evaluate dynamic and temporal modulations of root system architecture in response to nutrient availability have remained as widely open and exploratory areas in root biology. In this study, we developed a statistical modeling approach to investigate modulations of root system archi-tecture in response to nitrogen availability. Mathematical models were designed for quantitative assessment of root growth and root branching phenotypes and their dynamic relationships based on hierarchical configuration of primary and lateral roots formulating the fishbone-shaped root system architecture in Arabidopsis thaliana. Time-series datasets reporting dynamic changes in root developmental traits on different nitrate or ammonium concentrations were gener-ated for statistical analyses. Regression analyses unraveled key parameters associated with:(i) inhibition of primary root growth under nitrogen limitation or on ammonium;(i ) rapid progression of lateral root emergence in response to ammonium; and (i i) inhibition of lateral root elongation in the presence of excess nitrate or ammonium. This study provides a statistical framework for interpreting dynamic modulation of root system architecture, supported by meta-analysis of datasets displaying morphological responses of roots to diverse nitrogen supplies.

  1. Development of root observation method by image analysis system

    OpenAIRE

    Kim, Giyoung

    1995-01-01

    Knowledge of plant roots is important for determining plant-soil relationships, managing soil effectively, studying nutrient and water extraction, and creating a soil quality index. Plant root research is limited by the large amount of time and labor required to wash the roots from the soil and measure the viable roots. A root measurement method based on image analysis was proposed to reduce the time and labor requirement. A thinning algorithm-based image analysis method was us...

  2. Plant-in-chip: Microfluidic system for studying root growth and pathogenic interactions in Arabidopsis

    Science.gov (United States)

    Parashar, Archana; Pandey, Santosh

    2011-06-01

    We report a microfluidic platform for the hydroponic growth of Arabidopsis plants with high-resolution visualization of root development and root-pathogen interactions. The platform comprises a set of parallel microchannels with individual input/output ports where 1-day old germinated seedlings are initially placed. Under optimum conditions, a root system grows in each microchannel and its images are recorded over a 198-h period. Different concentrations of plant growth media show different root growth characteristics. Later, the developed roots are inoculated with two plant pathogens (nematodes and zoospores) and their physicochemical interactions with the live root systems are observed.

  3. Ring Nematodes (Mesocriconema xenoplax) Alter Root Colonization and Function of Arbuscular Mycorrhizal Fungi in Grape Roots in a Low P Soil

    Science.gov (United States)

    A reduction of arbuscules in roots of grapevines (Vitis vinifera) observed when ring nematodes were added to field microplots led to the hypothesis that nematode feeding suppresses arbuscules by competing for root carbohydrates. This hypothesis was tested by growing ‘Pinot noir’ grapevines in a fact...

  4. Alteration of P2X3 expression in dorsal root ganglia after sciatic nerve ligation

    Institute of Scientific and Technical Information of China (English)

    Guoxing Zhou; Lesi Xie; Qiben Wang; Qingping Yu; Xiaofu Liu; Qiumei Liu; Wei Peng; Zhicheng Zeng

    2007-01-01

    BACKGROUND: The expressions of P2X3 receptor in dorsal root ganglia (DRG) after different peripheral nerve injuries are diverse. It indicates the different roles of P2X3 in different models-caused neuropathologic pains.OBJECTIVE: To observe the expressions of P2X3 in corresponding DRG after sciatic nerve ligation in rats.DESIGN: Controlled observation experiment.SETTING: Department of Morphology, Hunan Traditional Chinese Medical College; Department of Human Anatomy and Neurobiology, Xiangya Medical College, Central South University.MATERIALS: Thirty-five healthy adult SD rats of clean grade an d either gender, weighing (200±20) g,were involved. According to the random digits table, the involved rats were randomized into 3 groups:normal group (n =5), sham-operated group (n =5) and experimental group (n =25). The experimental group were subdivided into 3, 7, 14, 21, 28 days groups according to different surviving time after operation, 5 rats at each time point. Polyclonal rabbit anti-P2X3 antibody (ABCAM company); biotinylated goat anti-rabbit IgG (Zhongshanjingqiao Biotechnical Co., Ltd., Beijing); Motic fluorescence microscope (Motic, Germany).METHODS: The experiments were carried out in the Department of Human Anatomy and Neurobiology,Xiangya Medical College, Central South University from June to December 2006. ① Rats of experimental group were created into models by ligation of right sciatic nerve according to the method of Seltzer et al. Left sciatic nerve was used as self-control. As for rats in the sham-operated group, ligation of sciatic nerve was omitted, but other procedures were the same as those in the experimental group. Rats of normal group were untouched. ② Rats of the normal group and sham-operated group survived for 14 days separately, and those of experimental group survived for corresponding time. After being deeply anesthetized by intraperitoneal injection of over-dose sodium pentobarbital, the rats of experimental group were transcardially

  5. Altered acetylcholinesterase levels in the spinal cord anterior horn and dorsal root ganglion following sciatic nerve ischemia

    Institute of Scientific and Technical Information of China (English)

    Zhenjun Yang; Pei Wang; Songhe Yang; Jingfeng Xue

    2009-01-01

    BACKGROUND: Peripheral nerve ischemia has been shown to result in ischemic fiber degeneration and axoplasmic transport disturbance. However, the effect on acetylcholinesterase (AChE) expression in relevant cells following sciatic nerve ischemia remains unclear. OBJECTIVE: To observe AChE concentration changes following peripheral nerve ischemia. DESIGN, TIME AND SETTING: The present comparative observation, neuroanatomical experiment was performed at the Central Laboratory Animal of Chengde Medical College between 2006 and 2007. MATERIALS: A total of 20 healthy, adult, Wistar rats were randomized into two groups (n = 10): 8-day ischemia and 14-day ischemia. METHODS: Ischemia injury was induced in the unilateral sciatic nerve (experimental side) through ligation of the common iliac artery. The contralateral side received no intervention, and served as the control side. Rats in the 8-day ischemia and 14-day ischemia groups were allowed to survive for 8 and 14 days, respectively. MAIN OUTCOME MEASURES: The L5 lumbar spinal cord and the L5 dorsal root ganglion were removed from both sides and sectioned utilizing a Leica vibrating slicer. AChE cellular expression was detected using Karnovsky-Root, and the number of AChE-positive cells and average gray value were analyzed using a MiVnt image analysis system. RESULTS: In the 8-day ischemia group, AChE-positive cell numbers were significantly less in the dorsal root ganglion and spinal cord anterior horn of the experimental side, but the average gray value was significantly greater, compared with the control side (P < 0.05). These changes were more significant in the 14-day ischemia group than in the 8-day ischemia group (P < 0.01). CONCLUSION: Peripheral nerve ischemia leads to decreased AChE expression in the associated cells in a time-dependent manner.

  6. Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

    Directory of Open Access Journals (Sweden)

    Lobet Guillaume

    2013-01-01

    Full Text Available Abstract This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1 separate the root system into a small number of large pieces to reduce root overlap, (2 scan these pieces one by one, (3 analyze separate images with a root tracing software and (4 combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns.

  7. How can we harness quantitative genetic variation in crop root systems for agricultural improvement?

    Science.gov (United States)

    Topp, Christopher N; Bray, Adam L; Ellis, Nathanael A; Liu, Zhengbin

    2016-03-01

    Root systems are a black box obscuring a comprehensive understanding of plant function, from the ecosystem scale down to the individual. In particular, a lack of knowledge about the genetic mechanisms and environmental effects that condition root system growth hinders our ability to develop the next generation of crop plants for improved agricultural productivity and sustainability. We discuss how the methods and metrics we use to quantify root systems can affect our ability to understand them, how we can bridge knowledge gaps and accelerate the derivation of structure-function relationships for roots, and why a detailed mechanistic understanding of root growth and function will be important for future agricultural gains. PMID:26911925

  8. Root carbon input in organic and inorganic fertilizer-based systems

    DEFF Research Database (Denmark)

    Chirinda, Ngoni; Olesen, Jørgen E; Porter, John

    cropping systems in a long-term experiment in 2 years, 2008 and 2010. Sampled shoots and macro-roots of catch crop mixtures and cereals were characterized for dry matter (DM) biomass (C was estimated as 45 % of DM biomass). We also measured topsoil root-related soil respiration throughout the growing...... C input to remain scant. This study aimed at determining macro-root C input and topsoil root related respiration in response to nutrient management and soil fertility building measures. Methods We sampled roots and shoots of cereals and catch crops in inorganic and organic fertilizer-based arable...... season of winter wheat by subtracting soil respiration from soil with and without exclusion of roots. Results Catch crop roots accounted for more than 40 % of total plant C. For spring barley in 2008 and spring wheat in 2010, root C was higher in the organic than in the inorganic fertilizer-based systems...

  9. Hairy Root as a Model System for Undergraduate Laboratory Curriculum and Research

    Science.gov (United States)

    Keyes, Carol A.; Subramanian, Senthil; Yu, Oliver

    2009-01-01

    Hairy root transformation has been widely adapted in plant laboratories to rapidly generate transgenic roots for biochemical and molecular analysis. We present hairy root transformations as a versatile and adaptable model system for a wide variety of undergraduate laboratory courses and research. This technique is easy, efficient, and fast making…

  10. Estimation of runoff mitigation by morphologically different cover crop root systems

    Science.gov (United States)

    Yu, Yang; Loiskandl, Willibald; Kaul, Hans-Peter; Himmelbauer, Margarita; Wei, Wei; Chen, Liding; Bodner, Gernot

    2016-07-01

    Hydrology is a major driver of biogeochemical processes underlying the distinct productivity of different biomes, including agricultural plantations. Understanding factors governing water fluxes in soil is therefore a key target for hydrological management. Our aim was to investigate changes in soil hydraulic conductivity driven by morphologically different root systems of cover crops and their impact on surface runoff. Root systems of twelve cover crop species were characterized and the corresponding hydraulic conductivity was measured by tension infiltrometry. Relations of root traits to Gardner's hydraulic conductivity function were determined and the impact on surface runoff was estimated using HYDRUS 2D. The species differed in both rooting density and root axes thickness, with legumes distinguished by coarser axes. Soil hydraulic conductivity was changed particularly in the plant row where roots are concentrated. Specific root length and median root radius were the best predictors for hydraulic conductivity changes. For an intensive rainfall simulation scenario up to 17% less rainfall was lost by surface runoff in case of the coarsely rooted legumes Melilotus officinalis and Lathyrus sativus, and the densely rooted Linum usitatissimum. Cover crops with coarse root axes and high rooting density enhance soil hydraulic conductivity and effectively reduce surface runoff. An appropriate functional root description can contribute to targeted cover crop selection for efficient runoff mitigation.

  11. Root system traits of Norway spruce, Scots pine, and silver birch in mixed boreal forests: an analysis of root architecture, morphology, and anatomy

    OpenAIRE

    Kalliokoski, Tuomo

    2011-01-01

    The aim of this thesis was to unravel the functional-structural characteristics of root systems of Betula pendula Roth., Picea abies (L.) Karst., and Pinus sylvestris L. in mixed boreal forest stands differing in their developmental stage and site fertility. The root systems of these species had similar structural regularities: horizontally-oriented shallow roots defined the horizontal area of influence, and within this area, each species placed fine roots in the uppermost soil layers, w...

  12. Inhibition of tomato (Solanum lycopersicum L.) root growth by cyanamide is due to altered cell division, phytohormone balance and expansin gene expression.

    Science.gov (United States)

    Soltys, Dorota; Rudzińska-Langwald, Anna; Gniazdowska, Agnieszka; Wiśniewska, Anita; Bogatek, Renata

    2012-11-01

    Cyanamide (CA) has been reported as a natural compound produced by hairy vetch (Vicia villosa Roth.) and it was shown also to be an allelochemical, responsible for strong allelopathic potential in this species. CA phytotoxicity has been demonstrated on various plant species, but to date little is known about its mode of action at cellular level. Treatment of tomato (Solanum lycopersicum L.) roots with CA (1.2 mM) resulted in inhibition of growth accompanied by alterations in cell division, and imbalance of plant hormone (ethylene and auxin) homeostasis. Moreover, the phytotoxic effect of CA was also manifested by modifications in expansin gene expression, especially in expansins responsible for cell wall remodeling after the cytokinesis (LeEXPA9, LeEXPA18). Based on these results the phytotoxic activity of CA on growth of roots of tomato seedlings is likely due to alterations associated with cell division. PMID:22847024

  13. Root system architecture: insights from Arabidopsis and cereal crops

    OpenAIRE

    Smith, Stephanie; De Smet, Ive

    2012-01-01

    Roots are important to plants for a wide variety of processes, including nutrient and water uptake, anchoring and mechanical support, storage functions, and as the major interface between the plant and various biotic and abiotic factors in the soil environment. Understanding the development and architecture of roots holds potential for the exploitation and manipulation of root characteristics to both increase food plant yield and optimize agricultural land use. This theme issue highlights the...

  14. Recovering root system traits using image analysis exemplified by two-dimensional neutron radiography images of lupine.

    Science.gov (United States)

    Leitner, Daniel; Felderer, Bernd; Vontobel, Peter; Schnepf, Andrea

    2014-01-01

    Root system traits are important in view of current challenges such as sustainable crop production with reduced fertilizer input or in resource-limited environments. We present a novel approach for recovering root architectural parameters based on image-analysis techniques. It is based on a graph representation of the segmented and skeletonized image of the root system, where individual roots are tracked in a fully automated way. Using a dynamic root architecture model for deciding whether a specific path in the graph is likely to represent a root helps to distinguish root overlaps from branches and favors the analysis of root development over a sequence of images. After the root tracking step, global traits such as topological characteristics as well as root architectural parameters are computed. Analysis of neutron radiographic root system images of lupine (Lupinus albus) grown in mesocosms filled with sandy soil results in a set of root architectural parameters. They are used to simulate the dynamic development of the root system and to compute the corresponding root length densities in the mesocosm. The graph representation of the root system provides global information about connectivity inside the graph. The underlying root growth model helps to determine which path inside the graph is most likely for a given root. This facilitates the systematic investigation of root architectural traits, in particular with respect to the parameterization of dynamic root architecture models. PMID:24218493

  15. Auxins differentially regulate root system architecture and cell cycle protein levels in maize seedlings.

    Science.gov (United States)

    Martínez-de la Cruz, Enrique; García-Ramírez, Elpidio; Vázquez-Ramos, Jorge M; Reyes de la Cruz, Homero; López-Bucio, José

    2015-03-15

    Maize (Zea mays) root system architecture has a complex organization, with adventitious and lateral roots determining its overall absorptive capacity. To generate basic information about the earlier stages of root development, we compared the post-embryonic growth of maize seedlings germinated in water-embedded cotton beds with that of plants obtained from embryonic axes cultivated in liquid medium. In addition, the effect of four different auxins, namely indole-3-acetic acid (IAA), 1-naphthaleneacetic acid (NAA), indole-3-butyric acid (IBA) and 2,4-dichlorophenoxyacetic acid (2,4-D) on root architecture and levels of the heat shock protein HSP101 and the cell cycle proteins CKS1, CYCA1 and CDKA1 were analyzed. Our data show that during the first days after germination, maize seedlings develop several root types with a simultaneous and/or continuous growth. The post-embryonic root development started with the formation of the primary root (PR) and seminal scutellar roots (SSR) and then continued with the formation of adventitious crown roots (CR), brace roots (BR) and lateral roots (LR). Auxins affected root architecture in a dose-response fashion; whereas NAA and IBA mostly stimulated crown root formation, 2,4-D showed a strong repressing effect on growth. The levels of HSP101, CKS1, CYCA1 and CDKA in root and leaf tissues were differentially affected by auxins and interestingly, HSP101 registered an auxin-inducible and root specific expression pattern. Taken together, our results show the timing of early branching patterns of maize and indicate that auxins regulate root development likely through modulation of the HSP101 and cell cycle proteins. PMID:25615607

  16. Systemic allergic dermatitis caused by Apiaceae root vegetables

    DEFF Research Database (Denmark)

    Paulsen, Evy; Petersen, Thomas H; Fretté, Xavier C;

    2014-01-01

    Immediate hypersensitivity reactions to root vegetables of the Umbelliferae plant family (Apiaceae) is well known. Delayed-type hypersensitivity is rarely reported.......Immediate hypersensitivity reactions to root vegetables of the Umbelliferae plant family (Apiaceae) is well known. Delayed-type hypersensitivity is rarely reported....

  17. Change of water use efficiency and its relation with root system growth in wheat evolution

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Raising crop water use efficiency (WUE) is the physiological basis to implement crop high efficiently using water. The present soil column and field experiments are designed to investigate the change of wheat WUE (Triticum aestivum L.) at whole plant level and root system growth in evolution and the relationship between WUE and its root system growth using 10 wheat evolution genotypes with different ploidy chromosomes sets. Results show that in wheat evolution from 2n→6n, WUE at whole plant level increases with the increase of ploidy chromosomes, and root system growth (root weight, root length) and root/shoot ratio of wheat decrease with the increase of ploidy chromosomes under dry and irrigated conditions. WUE is negatively correlated with root weight and root/shoot ratio of wheat in evolution, significantly. Root system growth has an adverse redundancy for WUE in wheat evolution, and the root redundancy reduces with the increase of ploidy chromosomes, which result in the increase of wheat WUE at whole plant level.

  18. Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants

    Institute of Scientific and Technical Information of China (English)

    Miguel A Pineros; Pierre-Luc Pradier; Nathanael M Shaw; Ithipong Assaranurak; Susan R McCouch; Craig Sturrock; Malcolm Bennett; Leon V Kochian; Brandon G Larson; Jon E Shaff; David J Schneider; Alexandre Xavier Falcao; Lixing Yuan; Randy T Clark; Eric J Craft; Tyler W Davis

    2016-01-01

    A plant’s ability to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, can be strongly influenced by root system architec-ture (RSA), the three-dimensional distribution of the different root types in the soil. The ability to image, track and quantify these root system attributes in a dynamic fashion is a useful tool in assessing desirable genetic and physiological root traits. Recent advances in imaging technology and phenotyp-ing software have resulted in substantive progress in describing and quantifying RSA. We have designed a hydroponic growth system which retains the three-dimen-sional RSA of the plant root system, while allowing for aeration, solution replenishment and the imposition of nutrient treatments, as well as high-quality imaging of the root system. The simplicity and flexibility of the system allows for modifications tailored to the RSA of different crop species and improved throughput. This paper details the recent improvements and innovations in our root growth and imaging system which allows for greater image sensitivity (detection of fine roots and other root details), higher efficiency, and a broad array of growing conditions for plants that more closely mimic those found under field conditions.

  19. Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants.

    Science.gov (United States)

    Piñeros, Miguel A; Larson, Brandon G; Shaff, Jon E; Schneider, David J; Falcão, Alexandre Xavier; Yuan, Lixing; Clark, Randy T; Craft, Eric J; Davis, Tyler W; Pradier, Pierre-Luc; Shaw, Nathanael M; Assaranurak, Ithipong; McCouch, Susan R; Sturrock, Craig; Bennett, Malcolm; Kochian, Leon V

    2016-03-01

    A plant's ability to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, can be strongly influenced by root system architecture (RSA), the three-dimensional distribution of the different root types in the soil. The ability to image, track and quantify these root system attributes in a dynamic fashion is a useful tool in assessing desirable genetic and physiological root traits. Recent advances in imaging technology and phenotyping software have resulted in substantive progress in describing and quantifying RSA. We have designed a hydroponic growth system which retains the three-dimensional RSA of the plant root system, while allowing for aeration, solution replenishment and the imposition of nutrient treatments, as well as high-quality imaging of the root system. The simplicity and flexibility of the system allows for modifications tailored to the RSA of different crop species and improved throughput. This paper details the recent improvements and innovations in our root growth and imaging system which allows for greater image sensitivity (detection of fine roots and other root details), higher efficiency, and a broad array of growing conditions for plants that more closely mimic those found under field conditions. PMID:26683583

  20. Phylloxera (Daktulosphaira vitifoliae Fitch) alters the carbohydrate metabolism in root galls to allowing the compatible interaction with grapevine (Vitis ssp.) roots

    OpenAIRE

    Griesser, Michaela; Lawo, Nora Caroline; Crespo-Martinez, Sara; Schoedl-Hummel, Katharina; Wieczorek, Krzysztof; Gorecka, Miroslawa; Liebner, Falk; Zweckmair, Thomas; Stralis Pavese, Nancy; Kreil, David; Forneck, Astrid

    2015-01-01

    Gall forming phylloxera may compete for nutrients with meristematic tissues and develop heterotrophic structures that act as carbon sinks. In this work, we studied the underlying starch metabolism, sink-source translocation of soluble sugars towards and within root galls. We demonstrated that nodosities store carbohydrates by starch accumulation and monitored the expression of genes involved in the starch metabolic. Thereby we proved that the nodosity is symplastically connected to the source...

  1. Optical methods for creating delivery systems of chemical compounds to plant roots

    Science.gov (United States)

    Kuznetsov, Pavel E.; Rogacheva, Svetlana M.; Arefeva, Oksana A.; Minin, Dmitryi V.; Tolmachev, Sergey A.; Kupadze, Machammad S.

    2004-08-01

    Spectrophotometric and fluorescence methods have been used for creation and investigation of various systems of target delivery of chemical compounds to roots of plants. The possibility of using liposomes, incrusted by polysaccharides of the external surface of nitrogen-fixing rizospheric bacteria Azospirillum brasilense SP 245, and nanoparticles incrusted by polysaccharides of wheat roots, as the named systems has been shown. The important role of polysaccharide-polysaccharide interaction in the adsorption processes of bacteria on wheat roots has been demonstrated.

  2. Altered Phenylpropanoid Metabolism in the Maize Lc-Expressed Sweet Potato (Ipomoea batatas) Affects Storage Root Development.

    Science.gov (United States)

    Wang, Hongxia; Yang, Jun; Zhang, Min; Fan, Weijuan; Firon, Nurit; Pattanaik, Sitakanta; Yuan, Ling; Zhang, Peng

    2016-01-01

    There is no direct evidence of the effect of lignin metabolism on early storage root development in sweet potato. In this study, we found that heterologous expression of the maize leaf color (Lc) gene in sweet potato increased anthocyanin pigment accumulation in the whole plant and resulted in reduced size with an increased length/width ratio, low yield and less starch content in the early storage roots. RT-PCR analysis revealed dramatic up-regulation of the genes involved in the lignin biosynthesis pathway in developing storage roots, leading to greater lignin content in the Lc transgenic lines, compared to the wild type. This was also evidenced by the enhanced lignification of vascular cells in the early storage roots. Furthermore, increased expression of the β-amylase gene in leaves and storage roots also accelerated starch degradation and increased the sugar use efficiency, providing more energy and carbohydrate sources for lignin biosynthesis in the Lc transgenic sweet potato. Lesser starch accumulation was observed in the developing storage roots at the initiation stage in the Lc plants. Our study provides experimental evidence of the basic carbohydrate metabolism underlying the development of storage roots, which is the transformation of lignin biosynthesis to starch biosynthesis. PMID:26727353

  3. Organic fertilization alters the community composition of root associated fungi in Pisum sativum

    DEFF Research Database (Denmark)

    Yu, L.; Nicolaisen, M.; Ravnskov, S.;

    2013-01-01

    Organic fertilization is well known to affect individual functional groups of root associated fungi such as arbuscular mycorrhizal (AM) fungi and root pathogens, but limited information is available on the effect of organic fertilization at the fungal community composition level. The main objective...... of the present study was to examine the response of communities of root associated fungi in Pisum sativum to Protamylasse, an organic fertilizer used in pea production. Plants were grown in pots with field soil amended with four different levels of Protamylasse. 454 pyrosequencing was employed to...... examine diversity of root associated fungi and revealed in total 164 non-singleton operational taxonomic units (OTUs). Principle component analysis (PCA) showed response of fungal community structure of the 15 most abundant OTUs to the four fertilization levels. Obligate biotrophic fungi such as the AM...

  4. Controlled release of 6-aminonicotinamide from aligned, electrospun fibers alters astrocyte metabolism and dorsal root ganglia neurite outgrowth

    Science.gov (United States)

    Schaub, Nicholas J.; Gilbert, Ryan J.

    2011-08-01

    Following central nervous system (CNS) injury, activated astrocytes form a glial scar that inhibits the migration of axons ultimately leading to regeneration failure. Biomaterials developed for CNS repair can provide local delivery of therapeutics and/or guidance mechanisms to encourage cell migration into damaged regions of the brain or spinal cord. Electrospun fibers are a promising type of biomaterial for CNS injury since these fibers can direct cellular and axonal migration while slowly delivering therapy to the injury site. In this study, it was hypothesized that inclusion of an anti-metabolite, 6-aminonicotinamide (6AN), within poly-l-lactic acid electrospun fibers could attenuate astrocyte metabolic activity while still directing axonal outgrowth. Electrospinning parameters were varied to produce highly aligned electrospun fibers that contained 10% or 20% (w/w) 6AN. 6AN release from the fiber substrates occurred continuously over 2 weeks. Astrocytes placed onto drug-releasing fibers were less active than those cultured on scaffolds without 6AN. Dorsal root ganglia placed onto control and drug-releasing scaffolds were able to direct neurites along the aligned fibers. However, neurite outgrowth was stunted by fibers that contained 20% 6AN. These results show that 6AN release from aligned, electrospun fibers can decrease astrocyte activity while still directing axonal outgrowth.

  5. Consequences of insect herbivory on grape fine root systems with different growth rates.

    Science.gov (United States)

    Bauerle, T L; Eissenstat, D M; Granett, J; Gardner, D M; Smart, D R

    2007-07-01

    Herbivory tolerance has been linked to plant growth rate where plants with fast growth rates are hypothesized to be more tolerant of herbivory than slower-growing plants. Evidence supporting this theory has been taken primarily from observations of aboveground organs but rarely from roots. Grapevines differing in overall rates of new root production, were studied in Napa Valley, California over two growing seasons in an established vineyard infested with the sucking insect, grape phylloxera (Daktulosphaira vitifoliae Fitch). The experimental vineyard allowed for the comparison of two root systems that differed in rates of new root tip production (a 'fast grower', Vitis berlandieri x Vitis rupestris cv. 1103P, and a slower-growing stock, Vitis riparia x Vitis rupestris cv. 101-14 Mgt). Each root system was grafted with a genetically identical shoot system (Vitis vinifera cv. Merlot). Using minirhizotrons, we did not observe any evidence of spatial or temporal avoidance of insect populations by root growth. Insect infestations were abundant throughout the soil profile, and seasonal peaks in phylloxera populations generally closely followed peaks in new root production. Our data supported the hypothesis that insect infestation was proportional to the number of growing tips, as indicated by similar per cent infestation in spite of a threefold difference in root tip production. In addition, infested roots of the fast-growing rootstock exhibited somewhat shorter median lifespans (60 d) than the slower-growing rootstock (85 d). Lifespans of uninfested roots were similar for the two rootstocks (200 d). As a consequence of greater root mortality of younger roots, infested root populations in the fast-growing rootstock had an older age structure. While there does not seem to be a trade-off between potential growth rate and relative rate of root infestation in these cultivars, our study indicates that a fast-growing root system may more readily shed infested roots that are

  6. Getting more from the core: studying mature root system traits in the field.

    Science.gov (United States)

    Wasson, Anton; Richards, Richard; Kirkegaard, John; Rebetzke, Greg; Watt, Michelle

    2015-04-01

    The productivity of existing agricultural land must be improved if global food requirements are to be met without agricultural land further encroaching on natural ecosystems degrading the services they provide. Better capture and use of the water and nutrients of the subsoil would improve the productivity and efficiency of many agricultural production systems and will also reduce risks of environmental damage (reducing leaching, eutrophication, and salinization). However in many agro-ecosystems subsoil resources are underutilised by crops, even where the crop would benefit from and can access them. Improved understanding of the development of root systems into subsoil may explain this perplexing phenomenon, but the technologies and approaches to characterise the root systems are lacking. Root systems have been neglected in cereal breeding efforts because they are difficult to work with, but, with many of the "easy" gains having been made, root systems are receiving increasing attention. Root system constraints can be limiting for water uptake and efficiency, even in high yielding environments. Pre-breeding efforts have focused on root traits in the laboratory, but these are not reflective of mature root systems in the field. We have reversed the approach, and have been developing the techniques necessary to phenotype roots in the field. Our studies have lead us to favour direct measures of root systems using soil coring, instead of indirect measures of root performance. We have been improving the throughput of soil coring and have developed a system that allowed us to identify genotypes with root traits that are superior to commercial varieties in wheat.

  7. Parameterising root system growth models using 2D neutron radiography images

    Science.gov (United States)

    Schnepf, Andrea; Felderer, Bernd; Vontobel, Peter; Leitner, Daniel

    2013-04-01

    Root architecture is a key factor for plant acquisition of water and nutrients from soil. In particular in view of a second green revolution where the below ground parts of agricultural crops are important, it is essential to characterise and quantify root architecture and its effect on plant resource acquisition. Mathematical models can help to understand the processes occurring in the soil-plant system, they can be used to quantify the effect of root and rhizosphere traits on resource acquisition and the response to environmental conditions. In order to do so, root architectural models are coupled with a model of water and solute transport in soil. However, dynamic root architectural models are difficult to parameterise. Novel imaging techniques such as x-ray computed tomography, neutron radiography and magnetic resonance imaging enable the in situ visualisation of plant root systems. Therefore, these images facilitate the parameterisation of dynamic root architecture models. These imaging techniques are capable of producing 3D or 2D images. Moreover, 2D images are also available in the form of hand drawings or from images of standard cameras. While full 3D imaging tools are still limited in resolutions, 2D techniques are a more accurate and less expensive option for observing roots in their environment. However, analysis of 2D images has additional difficulties compared to the 3D case, because of overlapping roots. We present a novel algorithm for the parameterisation of root system growth models based on 2D images of root system. The algorithm analyses dynamic image data. These are a series of 2D images of the root system at different points in time. Image data has already been adjusted for missing links and artefacts and segmentation was performed by applying a matched filter response. From this time series of binary 2D images, we parameterise the dynamic root architecture model in the following way: First, a morphological skeleton is derived from the binary

  8. Casuarina root exudates alter the physiology, surface properties, and plant infectivity of Frankia sp Strain CcI3

    OpenAIRE

    Beauchemin, Nicholas J.; Furnholm, Teal; Lavenus, Julien; Svistoonoff, Sergio; Doumas, Patrick; Bogusz, Didier; Laplaze, Laurent; Tisa, Louis S.

    2012-01-01

    The actinomycete genus Frankia forms nitrogen-fixing symbioses with 8 different families of actinorhizal plants, representing more than 200 different species. Very little is known about the initial molecular interactions between Frankia and host plants in the rhizosphere. Root exudates are important in Rhizobium-legume symbiosis, especially for initiating Nod factor synthesis. We measured differences in Frankia physiology after exposure to host aqueous root exudates to assess their effects on...

  9. Toxicity of canavanine in tomato (Solanum lycopersicum L.) roots is due to alterations in RNS, ROS and auxin levels.

    Science.gov (United States)

    Krasuska, Urszula; Andrzejczak, Olga; Staszek, Paweł; Borucki, Wojciech; Gniazdowska, Agnieszka

    2016-06-01

    Canavanine (CAN) is non-proteinogenic aminoacid and a structural analog of arginine (Arg). Naturally, CAN occurs in legumes e.g. jack bean and is considered as a strong allelochemical. As a selective inhibitor of inducible nitric oxide synthase in mammalians, it could act as a modifier of nitric oxide (NO) concentration in plants. Modifications in the content of endogenous reactive nitrogen species (RNS) and reactive oxygen species (ROS) influence root structure and architecture, being also under hormonal control. The aim of the work was to investigate regulation of root growth in tomato (Solanum lycopersicum L. cv. Malinowy Ożarowski) seedling by application of CAN at concentration (10 and 50 μM) leading to 50% or 100% restriction of root elongation. CAN at higher concentration led to slight DNA fragmentation, increased total RNA and protein level. Decline in total respiration rate after CAN supplementation was not associated with enhanced membrane permeability. Malformations in root morphology (shorter and thicker roots, limited number of lateral roots) were accompanied by modification in NO and ONOO(-) localization; determined mainly in peridermal cells and some border cells. Although, CAN resulted in low RNS production, addition of exogenous NO by usage of NO donors did not reverse its negative effect, nor recovery effect was detected after roots imbibition in Arg. To build up a comprehensive view on mode of action of CAN as root growth inhibitor, it was shown an elevated level of auxin. To summarize, we demonstrated several secondary mode of action of CAN, indicating its toxicity in plants linked to restriction in RNS formation accompanied by simultaneous overaccumulation of ROS. PMID:26986929

  10. Multitrophic Interaction in the Rhizosphere of Maize: Root Feeding of Western Corn Rootworm Larvae Alters the Microbial Community Composition

    OpenAIRE

    Dematheis, Flavia; Zimmerling, Ute; Flocco, Cecilia; Kurtz, Benedikt; Vidal, Stefan; Kropf, Siegfried; Smalla, Kornelia

    2012-01-01

    Background: Larvae of the Western Corn Rootworm (WCR) feeding on maize roots cause heavy economical losses in the US and in Europe. New or adapted pest management strategies urgently require a better understanding of the multitrophic interaction in the rhizosphere. This study aimed to investigate the effect of WCR root feeding on the microbial communities colonizing the maize rhizosphere. Methodology/Principal Findings: In a greenhouse experiment, maize lines KWS13, KWS14, KWS15 a...

  11. Locally Finite Root Supersystems

    OpenAIRE

    YOUSOFZADEH, Malihe

    2013-01-01

    We introduce the notion of locally finite root supersystems as a generalization of both locally finite root systems and generalized root systems. We classify irreducible locally finite root supersystems.

  12. Cloning of Pinus sylvestris SCARECROW gene and its expression pattern in the pine root system, mycorrhiza and NPA-treated short roots.

    Science.gov (United States)

    Laajanen, Kaisa; Vuorinen, Irmeli; Salo, Vanamo; Juuti, Jarmo; Raudaskoski, Marjatta

    2007-01-01

    The SCARECROW (SCR) gene is central to root radial patterning. Its expression has not been investigated in conifers with morphologically different root types. Additional interest in SCR functions in the Pinus sylvestris root system comes from the effect of ectomycorrhiza formation on the short root apical structure. Here, the P. sylvestris SCR gene (PsySCR) was cloned and its expression investigated by northern blot and in situ hybridization of primary, lateral and short roots and mycorrhiza. Short root dichotomization was induced by auxin transport inhibitor (N-1-naphthylphthalamic acid (NPA)). PsySCR has conserved GRAS family protein motifs at the C-terminus and a variable N-terminus. PsySCR expression occurred in young root tissue and mycorrhiza. In root sections the PsySCR signal runs through the tip in initials for stele and root cap column and becomes upwards-restricted to endodermis in all root types. The PsySCR expression pattern suggests for the first time a regulatory role for SCR in maintaining the endodermal characteristics and radial patterning of roots with open meristem organization. The specific PsySCR localization is also an excellent marker for investigation of the dichotomization process in short roots. PMID:17587372

  13. Alterations in cytosol free calcium in horseradish roots simultaneously exposed to lanthanum(III) and acid rain.

    Science.gov (United States)

    Zhang, Xuanbo; Wang, Lihong; Zhou, Anhua; Zhou, Qing; Huang, Xiaohua

    2016-04-01

    The extensive use of rare earth elements (REEs) has increased their environmental levels. REE pollution concomitant with acid rain in many agricultural regions can affect crop growth. Cytosol free calcium ions (Ca(2+)) play an important role in almost all cellular activities. However, no data have been reported regarding the role of cytosol free Ca(2+) in plant roots simultaneously exposed to REE and acid rain. In this study, the effects of exposures to lanthanum(III) and acid rain, independently and in combination, on cytosol free Ca(2+) levels, root activity, metal contents, biomass, cytosol pH and La contents in horseradish roots were investigated. The simultaneous exposures to La(III) and acid rain increased or decreased the cytosol free Ca(2+) levels, depending on the concentration of La(III), and these effects were more evident than independent exposure to La(III) or acid rain. In combined exposures, cytosol free Ca(2+) played an important role in the regulation of root activity, metal contents and biomass. These roles were closely related to La(III) dose, acid rain strength and treatment mode (independent exposure or simultaneous exposure). A low concentration of La(III) (20 mg L(-1)) could alleviate the adverse effects on the roots caused by acid rain, and the combined exposures at higher concentrations of La(III) and acid rain had synergic effects on the roots. PMID:26720810

  14. Long-Term Boron-Excess-Induced Alterations of Gene Profiles in Roots of Two Citrus Species Differing in Boron-Tolerance Revealed by cDNA-AFLP

    Science.gov (United States)

    Guo, Peng; Qi, Yi-Ping; Yang, Lin-Tong; Ye, Xin; Huang, Jing-Hao; Chen, Li-Song

    2016-01-01

    Boron (B) toxicity is observed in some citrus orchards in China. However, limited data are available on the molecular mechanisms of citrus B-toxicity and B-tolerance. Using cDNA-AFLP, we identified 20 up- and 52 down-regulated genes, and 44 up- and 66 down-regulated genes from excess B-treated Citrus sinensis and Citrus grandis roots, respectively, thereby demonstrating that gene expression profiles were more affected in the latter. In addition, phosphorus and total soluble protein concentrations were lowered only in excess B-treated C. grandis roots. Apparently, C. sinensis had higher B-tolerance than C. grandis. Our results suggested that the following several aspects were responsible for the difference in the B-tolerance between the two citrus species including: (a) B-excess induced Root Hair Defective 3 expression in C. sinensis roots, and repressed villin4 expression in C. grandis roots; accordingly, root growth was less inhibited by B-excess in the former; (b) antioxidant systems were impaired in excess B-treated C. grandis roots, hence accelerating root senescence; (c) genes related to Ca2+ signals were inhibited (induced) by B-excess in C. grandis (C. sinensis) roots. B-excess-responsive genes related to energy (i.e., alternative oxidase and cytochrome P450), lipid (i.e., Glycerol-3-phosphate acyltransferase 9 and citrus dioxygenase), and nucleic acid (i.e., HDA19, histone 4, and ribonucleotide reductase RNR1 like protein) metabolisms also possibly accounted for the difference in the B-tolerance between the two citrus species. These data increased our understanding of the mechanisms on citrus B-toxicity and B-tolerance at transcriptional level. PMID:27446128

  15. “Rhizoponics”: a novel hydroponic rhizotron for root system analyses on mature Arabidopsis thaliana plants

    OpenAIRE

    Mathieu, Laura; Lobet, Guillaume; Tocquin, Pierre; Périlleux, Claire

    2015-01-01

    Background Well-developed and functional roots are critical to support plant life and reach high crop yields. Their study however, is hampered by their underground growth and characterizing complex root system architecture (RSA) therefore remains a challenge. In the last few years, several phenotyping methods, including rhizotrons and x-ray computed tomography, have been developed for relatively thick roots. But in the model plant Arabidopsis thaliana, in vitro culture remains the easiest and...

  16. Radiodiagnosis of pulmonary alterations in systemic lupus erythematosus patients

    International Nuclear Information System (INIS)

    X-ray examination was carried out in 170 patients with systemic lupus erythematosus. Certain parameters of specific immunity were studied in 60 of them, while X-ray data were compared with morphological findings on autopsy in 20 cases. A tendency toward escalation of specific cell and humoral parameters was discovered in pulmonary lesion, predetermined by vasculitis and perivasculitis, as well as inflammatory and fibrotic alterations in the interstitial tissue

  17. A Study of Tensile Strength Tests of Arborous Species Root System in Forest Engineering Technique of Shallow Landslide

    Institute of Scientific and Technical Information of China (English)

    YANG Yonghong; LIU Shuzhen; WANG Chenghua; TANG Chuan

    2006-01-01

    One experiment was conducted, through tensile tests of Albazzia and Eucalypt roots culled from the fields. The other experiment was conducted, by testing anti-drawing strength of these root systems in the Albazzia and Eucalypt lands. These two experiments had an aim to give insights into the maximum tensile strength and anti-drawing strength of the root systems. Results indicated that the maximum tensile strength of root system is in an exponential relation with the diameter of root system while the maximum tensile strength is positively correlative with the diameter of root system. Anti-drawing force of root system together with root diameter, length, and soil bulk density are folded into a regression equation in an attempt to figure out the static friction coefficient between root system and its ambient soil.

  18. Salinity altered root distribution and increased diversity of bacterial communities in the rhizosphere soil of Jerusalem artichoke.

    Science.gov (United States)

    Yang, Hui; Hu, Jinxiang; Long, Xiaohua; Liu, Zhaopu; Rengel, Zed

    2016-01-01

    The interaction between roots and bacterial communities in halophytic species is poorly understood. Here, we used Jerusalem artichoke cultivar Nanyu 1 (NY-1) to characterise root distribution patterns and determine diversity and abundance of bacteria in the rhizosphere soil under variable salinity. Root growth was not inhibited within the salinity range 1.2 to 1.9 g salt/kg, but roots were mainly confined to 0-20 cm soil layer vertically and 0-30 cm horizontally from the plant centre. Root concentrations of K(+), Na(+), Mg(2+) and particularly Ca(2+) were relatively high under salinity stress. High salinity stress decreased soil invertase and catalase activity. Using a next-generation, Illumina-based sequencing approach, we determined higher diversity of bacteria in the rhizosphere soil at high than low salinity. More than 15,500 valid reads were obtained, and Proteobacteria, Acidobacteria, Bacteroidetes and Actinobacteria predominated in all samples, accounting for >80% of the reads. On a genus level, 636 genera were common to the low and high salinity treatments at 0-5 cm and 5-10 cm depth. The abundance of Steroidobacter and Sphingomonas was significantly decreased by increasing salinity. Higher Shannon and Chao 1 indices with increasing severity of salt stress indicated that high salt stress increased diversity in the bacterial communities. PMID:26852800

  19. Cadmium Toxicity Induced Alterations in the Root Proteome of Green Gram in Contrasting Response towards Iron Supplement

    Directory of Open Access Journals (Sweden)

    Sowbiya Muneer

    2014-04-01

    Full Text Available Cadmium signifies a severe threat to crop productivity and green gram is a notably iron sensitive plant which shows considerable variation towards cadmium stress. A gel-based proteomics analysis was performed with the roots of green gram exposed to iron and cadmium combined treatments. The resulting data show that twenty three proteins were down-regulated in iron-deprived roots either in the absence (−Fe/−Cd or presence (−Fe/+Cd of cadmium. These down-regulated proteins were however well expressed in roots under iron sufficient conditions, even in the presence of cadmium (+Fe/+Cd. The functional classification of these proteins determined that 21% of the proteins are associated with nutrient metabolism. The other proteins in higher quantities are involved in either transcription or translation regulation, and the rest are involved in biosynthesis metabolism, antioxidant pathways, molecular chaperones and stress response. On the other hand, several protein spots were also absent in roots in response to iron deprivation either in absence (−Fe/−Cd or presence (−Fe/+Cd of cadmium but were well expressed in the presence of iron (+Fe/+Cd. Results suggest that green gram plants exposed to cadmium stress are able to change the nutrient metabolic balance in roots, but in the mean time regulate cadmium toxicity through iron supplements.

  20. Improvement of Growth and Periplocin Yield of Periploca sepium Adventitious Root Cultures by Altering Nitrogen Source Supply

    Institute of Scientific and Technical Information of China (English)

    ZHANG Jian; GAO Wen-yuan; WANG Juan; LI Xing-lin; XIAO Pei-gen

    2011-01-01

    Objective To increase the ultimate yield of periplocin in Periploca sepium adventitious root cultures by a two-stage culture based on nitrogen source.Methods Firstly,the effects of nitrogen source(NH-NO-)at different ratios and different total initial nitrogen amounts on the accumulation of biomass and secondary metabolites in adventitious root cultures of P sepium were investigated,and growth and production media for the two-stage culture based on the above results were established.Results The highest biomass and periplocin content were obtained in the culture medium of 15 mmol/L total nitrogen amount with NH-NO(1:2)and 30 mmol/L total nitrogen amount with nitrate as the sole nitrogen source.By adopting a fed-batch cultivation strategy,the dry weight adventitious root,periplocin content and yield were increased by 136%,108%,and 389%,respectively when compared with those of the control,reaching up to 8.13 g/L,157.15 μg/g,and 1277.63 μg/L,respectively.Furthermore,it was found that in the process of two-stage culture,the adventitious roots grew thicker significantly after they were transferred into production medium directly.Conclusion The ultimate yield of periplocin in P.sepium adventitious root cultures could be significantly increased by a two-stage culture based on nitrogen source.

  1. Salinity altered root distribution and increased diversity of bacterial communities in the rhizosphere soil of Jerusalem artichoke

    Science.gov (United States)

    Yang, Hui; Hu, Jinxiang; Long, Xiaohua; Liu, Zhaopu; Rengel, Zed

    2016-01-01

    The interaction between roots and bacterial communities in halophytic species is poorly understood. Here, we used Jerusalem artichoke cultivar Nanyu 1 (NY-1) to characterise root distribution patterns and determine diversity and abundance of bacteria in the rhizosphere soil under variable salinity. Root growth was not inhibited within the salinity range 1.2 to 1.9 g salt/kg, but roots were mainly confined to 0–20 cm soil layer vertically and 0–30 cm horizontally from the plant centre. Root concentrations of K+, Na+, Mg2+ and particularly Ca2+ were relatively high under salinity stress. High salinity stress decreased soil invertase and catalase activity. Using a next-generation, Illumina-based sequencing approach, we determined higher diversity of bacteria in the rhizosphere soil at high than low salinity. More than 15,500 valid reads were obtained, and Proteobacteria, Acidobacteria, Bacteroidetes and Actinobacteria predominated in all samples, accounting for >80% of the reads. On a genus level, 636 genera were common to the low and high salinity treatments at 0–5 cm and 5–10 cm depth. The abundance of Steroidobacter and Sphingomonas was significantly decreased by increasing salinity. Higher Shannon and Chao 1 indices with increasing severity of salt stress indicated that high salt stress increased diversity in the bacterial communities. PMID:26852800

  2. Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments

    Science.gov (United States)

    Özok, A.R.; Persoon, I.F.; Huse, S.M.; Keijser, B.J.F.; Wesselink, P.R.; Crielaard, W.; Zaura, E.

    2016-01-01

    Aim To evaluate the microbial ecology of the coronal and apical segments of infected root canal systems using a complete sampling technique and next-generation sequencing. Methodology The roots of 23 extracted teeth with apical periodontitis were sectioned in half, horizontally, and cryo-pulverized. Bacterial communities were profiled using tagged 454 pyrosequencing of the 16S rDNA hypervariable V5–V6 region. Results The sequences were classified into 606 taxa (species or higher taxon), representing 24 bacterial phyla or candidate divisions and one archaeal phylum. Proteobacteria were more abundant in the apical samples (proots compared to their coronal counterparts. Conclusions Endodontic infections are more complex than reported previously. The apical part of the root canal system drives the selection of a more diverse and more anaerobe community than the coronal part. The presence of a distinct ecological niche in the apical region explains the difficulty of eradication of the infection, and emphasizes the need that new treatment approaches should be developed. PMID:22251411

  3. Canavanine Alters ROS/RNS Level and Leads to Post-translational Modification of Proteins in Roots of Tomato Seedlings

    Science.gov (United States)

    Krasuska, Urszula; Andrzejczak, Olga; Staszek, Paweł; Bogatek, Renata; Gniazdowska, Agnieszka

    2016-01-01

    Canavanine (CAN), a structural analog of arginine (Arg), is used as a selective inhibitor of inducible NOS in mammals. CAN is incorporated into proteins’ structure in the place of Arg, leading to the formation of aberrant compounds. This non-protein amino acid is found in legumes, e.g., Canavalia ensiformis (L.) DC. or Sutherlandia frutescens (L.) R.Br. and acts as a strong toxin against herbivores or plants. Tomato (Solanum lycopersicum L.) seedlings were treated for 24–72 h with CAN (10 or 50 μM) inhibiting root growth by 50 or 100%, without lethal effect. We determined ROS level/production in root extracts, fluorescence of DAF-FM and APF derivatives corresponding to RNS level in roots of tomato seedlings and linked CAN-induced restriction of root growth to the post-translational modifications (PTMs) of proteins: carbonylation and nitration. Both PTMs are stable markers of nitro-oxidative stress, regarded as the plant’s secondary response to phytotoxins. CAN enhanced H2O2 content and superoxide radicals generation in extracts of tomato roots and stimulated formation of protein carbonyl groups. An elevated level of carbonylated proteins was characteristic for the plants after 72 h of the culture, mainly for the roots exposed to 10 μM CAN. The proteolytic activity was stimulated by tested non-protein amino acid. CAN treatment led to decline of fluorescence of DAF-FM derivatives, and transiently stimulated fluorescence of APF derivatives. Short-term exposure of tomato seedlings to CAN lowered the protein nitration level. Activity of peroxidase, polyamine oxidase and NADPH oxidase, enzymes acting as modulators of H2O2 concentration and governing root architecture and growth were determined. Activities of all enzymes were stimulated by CAN, but no strict CAN concentration dependence was observed. We conclude, that although CAN treatment led to a decline in the nitric oxide level, PTMs observed in roots of plants exposed to CAN are linked rather to the

  4. Canavanine Alters ROS/RNS Level and Leads to Post-translational Modification of Proteins in Roots of Tomato Seedlings.

    Science.gov (United States)

    Krasuska, Urszula; Andrzejczak, Olga; Staszek, Paweł; Bogatek, Renata; Gniazdowska, Agnieszka

    2016-01-01

    Canavanine (CAN), a structural analog of arginine (Arg), is used as a selective inhibitor of inducible NOS in mammals. CAN is incorporated into proteins' structure in the place of Arg, leading to the formation of aberrant compounds. This non-protein amino acid is found in legumes, e.g., Canavalia ensiformis (L.) DC. or Sutherlandia frutescens (L.) R.Br. and acts as a strong toxin against herbivores or plants. Tomato (Solanum lycopersicum L.) seedlings were treated for 24-72 h with CAN (10 or 50 μM) inhibiting root growth by 50 or 100%, without lethal effect. We determined ROS level/production in root extracts, fluorescence of DAF-FM and APF derivatives corresponding to RNS level in roots of tomato seedlings and linked CAN-induced restriction of root growth to the post-translational modifications (PTMs) of proteins: carbonylation and nitration. Both PTMs are stable markers of nitro-oxidative stress, regarded as the plant's secondary response to phytotoxins. CAN enhanced H2O2 content and superoxide radicals generation in extracts of tomato roots and stimulated formation of protein carbonyl groups. An elevated level of carbonylated proteins was characteristic for the plants after 72 h of the culture, mainly for the roots exposed to 10 μM CAN. The proteolytic activity was stimulated by tested non-protein amino acid. CAN treatment led to decline of fluorescence of DAF-FM derivatives, and transiently stimulated fluorescence of APF derivatives. Short-term exposure of tomato seedlings to CAN lowered the protein nitration level. Activity of peroxidase, polyamine oxidase and NADPH oxidase, enzymes acting as modulators of H2O2 concentration and governing root architecture and growth were determined. Activities of all enzymes were stimulated by CAN, but no strict CAN concentration dependence was observed. We conclude, that although CAN treatment led to a decline in the nitric oxide level, PTMs observed in roots of plants exposed to CAN are linked rather to the formation of

  5. Altered Phenylpropanoid Metabolism in the Maize Lc-Expressed Sweet Potato (Ipomoea batatas) Affects Storage Root Development

    OpenAIRE

    Hongxia Wang; Jun Yang; Min Zhang; Weijuan Fan; Nurit Firon; Sitakanta Pattanaik; Ling Yuan; Peng Zhang

    2016-01-01

    There is no direct evidence of the effect of lignin metabolism on early storage root development in sweet potato. In this study, we found that heterologous expression of the maize leaf color (Lc) gene in sweet potato increased anthocyanin pigment accumulation in the whole plant and resulted in reduced size with an increased length/width ratio, low yield and less starch content in the early storage roots. RT-PCR analysis revealed dramatic up-regulation of the genes involved in the lignin biosy...

  6. Advances and considerations in technologies for growing, imaging, and analyzing 3-D root system architecture

    Science.gov (United States)

    The ability of a plant to mine the soil for nutrients and water is determined by how, where, and when roots are arranged in the soil matrix. The capacity of plant to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, is affected by root system architectu...

  7. Inhibition of tomato (Solanum lycopersicum L.) root growth by cyanamide is due to altered cell division, phytohormone balance and expansin gene expression

    OpenAIRE

    Soltys, Dorota; Rudzińska-Langwald, Anna; Gniazdowska, Agnieszka; Wiśniewska, Anita; Bogatek, Renata

    2012-01-01

    Cyanamide (CA) has been reported as a natural compound produced by hairy vetch (Vicia villosa Roth.) and it was shown also to be an allelochemical, responsible for strong allelopathic potential in this species. CA phytotoxicity has been demonstrated on various plant species, but to date little is known about its mode of action at cellular level. Treatment of tomato (Solanum lycopersicum L.) roots with CA (1.2 mM) resulted in inhibition of growth accompanied by alterations in cell division, an...

  8. Composite potato plants with transgenic roots on non-transgenic shoots: a model system for studying gene silencing in roots

    DEFF Research Database (Denmark)

    Horn, Patricia; Santala, Johanna; Nielsen, Steen Lykke; Hühns, Maja; Broer, Inge; Valkonen, Jari P. T.

    2014-01-01

    induced phenotypically normal roots which, however, showed a reduced response to cytokinin as compared with non-transgenic roots. Nevertheless, both types of roots were infected to a similar high rate with the zoospores of Spongospora subterranea, a soilborne potato pathogen. The transgenic roots of...

  9. An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota1[C][W][OA

    Science.gov (United States)

    Badri, Dayakar V.; Quintana, Naira; El Kassis, Elie G.; Kim, Hye Kyong; Choi, Young Hae; Sugiyama, Akifumi; Verpoorte, Robert; Martinoia, Enrico; Manter, Daniel K.; Vivanco, Jorge M.

    2009-01-01

    Root exudates influence the surrounding soil microbial community, and recent evidence demonstrates the involvement of ATP-binding cassette (ABC) transporters in root secretion of phytochemicals. In this study, we examined effects of seven Arabidopsis (Arabidopsis thaliana) ABC transporter mutants on the microbial community in native soils. After two generations, only the Arabidopsis abcg30 (Atpdr2) mutant had significantly altered both the fungal and bacterial communities compared with the wild type using automated ribosomal intergenic spacer analysis. Similarly, root exudate profiles differed between the mutants; however, the largest variance from the wild type (Columbia-0) was observed in abcg30, which showed increased phenolics and decreased sugars. In support of this biochemical observation, whole-genome expression analyses of abcg30 roots revealed that some genes involved in biosynthesis and transport of secondary metabolites were up-regulated, while some sugar transporters were down-regulated compared with genome expression in wild-type roots. Microbial taxa associated with Columbia-0 and abcg30 cultured soils determined by pyrosequencing revealed that exudates from abcg30 cultivated a microbial community with a relatively greater abundance of potentially beneficial bacteria (i.e. plant-growth-promoting rhizobacteria and nitrogen fixers) and were specifically enriched in bacteria involved in heavy metal remediation. In summary, we report how a single gene mutation from a functional plant mutant influences the surrounding community of soil organisms, showing that genes are not only important for intrinsic plant physiology but also for the interactions with the surrounding community of organisms as well. PMID:19854857

  10. A portable fluorescence spectroscopy imaging system for automated root phenotyping in soil cores in the field.

    Science.gov (United States)

    Wasson, Anton; Bischof, Leanne; Zwart, Alec; Watt, Michelle

    2016-02-01

    Root architecture traits are a target for pre-breeders. Incorporation of root architecture traits into new cultivars requires phenotyping. It is attractive to rapidly and directly phenotype root architecture in the field, avoiding laboratory studies that may not translate to the field. A combination of soil coring with a hydraulic push press and manual core-break counting can directly phenotype root architecture traits of depth and distribution in the field through to grain development, but large teams of people are required and labour costs are high with this method. We developed a portable fluorescence imaging system (BlueBox) to automate root counting in soil cores with image analysis software directly in the field. The lighting system was optimized to produce high-contrast images of roots emerging from soil cores. The correlation of the measurements with the root length density of the soil cores exceeded the correlation achieved by human operator measurements (R (2)=0.68 versus 0.57, respectively). A BlueBox-equipped team processed 4.3 cores/hour/person, compared with 3.7 cores/hour/person for the manual method. The portable, automated in-field root architecture phenotyping system was 16% more labour efficient, 19% more accurate, and 12% cheaper than manual conventional coring, and presents an opportunity to directly phenotype root architecture in the field as part of pre-breeding programs. The platform has wide possibilities to capture more information about root health and other root traits in the field. PMID:26826219

  11. A portable fluorescence spectroscopy imaging system for automated root phenotyping in soil cores in the field

    Science.gov (United States)

    Wasson, Anton; Bischof, Leanne; Zwart, Alec; Watt, Michelle

    2016-01-01

    Root architecture traits are a target for pre-breeders. Incorporation of root architecture traits into new cultivars requires phenotyping. It is attractive to rapidly and directly phenotype root architecture in the field, avoiding laboratory studies that may not translate to the field. A combination of soil coring with a hydraulic push press and manual core-break counting can directly phenotype root architecture traits of depth and distribution in the field through to grain development, but large teams of people are required and labour costs are high with this method. We developed a portable fluorescence imaging system (BlueBox) to automate root counting in soil cores with image analysis software directly in the field. The lighting system was optimized to produce high-contrast images of roots emerging from soil cores. The correlation of the measurements with the root length density of the soil cores exceeded the correlation achieved by human operator measurements (R 2=0.68 versus 0.57, respectively). A BlueBox-equipped team processed 4.3 cores/hour/person, compared with 3.7 cores/hour/person for the manual method. The portable, automated in-field root architecture phenotyping system was 16% more labour efficient, 19% more accurate, and 12% cheaper than manual conventional coring, and presents an opportunity to directly phenotype root architecture in the field as part of pre-breeding programs. The platform has wide possibilities to capture more information about root health and other root traits in the field. PMID:26826219

  12. Phylloxera (Daktulosphaira vitifoliae Fitch) alters the carbohydrate metabolism in root galls to allowing the compatible interaction with grapevine (Vitis ssp.) roots.

    Science.gov (United States)

    Griesser, Michaela; Lawo, Nora Caroline; Crespo-Martinez, Sara; Schoedl-Hummel, Katharina; Wieczorek, Krzysztof; Gorecka, Miroslawa; Liebner, Falk; Zweckmair, Thomas; Stralis Pavese, Nancy; Kreil, David; Forneck, Astrid

    2015-05-01

    Gall forming phylloxera may compete for nutrients with meristematic tissues and develop heterotrophic structures that act as carbon sinks. In this work, we studied the underlying starch metabolism, sink-source translocation of soluble sugars towards and within root galls. We demonstrated that nodosities store carbohydrates by starch accumulation and monitored the expression of genes involved in the starch metabolic. Thereby we proved that the nodosity is symplastically connected to the source tissues through its development and that the starch metabolism is significantly affected to synthesize and degrade starch within the gall. Genes required for starch biosynthesis and degradation are up-regulated. Among the carbohydrate transporters the expression of a glucose-6-phosphate translocater, one sucrose transporter and two SWEET proteins were increases, whereas hexose transporters, tonoplast monosaccharide transporter and Erd6-like sugar transporters were decreased. We found general evidence for plant response to osmotic stress in the nodosity as previously suggested for gall induction processes. We conclude that nodosities are heterogenous plant organs that accumulate starch to serve as temporary storage structure that is gradually withdrawn by phylloxera. Phylloxera transcriptionally reprograms gall tissues beyond primary metabolism and included downstream secondary processes, including response to osmotic stress. PMID:25804808

  13. Integrated approaches to root disease management in organic farming systems

    NARCIS (Netherlands)

    Bruggen, van A.H.C.; Termorshuizen, A.J.

    2003-01-01

    Conventional agriculture has had major environmental impacts, in particular with respect to soil degradation. Soil structure, fertility, microbial and faunal biodiversity have declined, and root diseases are common unless genetic resistance, soil fumigation and/or seed treatments are used. Primarily

  14. Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology

    OpenAIRE

    Zhenzhen eQiao; Marc eLibault

    2013-01-01

    Plant root is an organ composed of multiple cell types with different functions. This multicellular complexity limits our understanding of root biology because –omics studies performed at the level of the entire root reflect the average responses of all cells composing the organ. To overcome this difficulty and allow a more comprehensive understanding of root cell biology, an approach is needed that would focus on one single cell type in the plant root. Because of its biological functions (i....

  15. Evaluation of the morphological alteration of the root surface radiated with a diode laser; Avaliacao da alteracao morfologica da superficie cimentaria irradiada com laser de diodo

    Energy Technology Data Exchange (ETDEWEB)

    Gulin, Mauricio

    2003-07-01

    The diode laser has been studied for periodontal therapy, as much for removal of calculus as for microbial reduction of periodontal pockets, as well as the visible analgesic effects and biomodulation capacity. For this reason the purpose of this study was to evaluate the morphological alteration of the root surface after radiation with the diode laser, 808 nm through analysis by scanning electron microscopy (SEM). Besides this, to verify the temperature variations caused during the radiation, a thermometer put into the dentinal wall of the root canal was used. In all, 18 teeth were used, 15 of which for the SEM study, and the other 3 were used to temperature variation analysis. The 25 samples were scraped on the root surface and planed with manual instruments. The other 5 were not subjected to any type of treatment. This, 6 groups of 5 samples each were formed. Control Group C whose samples had not received any treatment; Control Group C 1 was only scraped and polished conventionally with Hu-Friedy Gracey curettes 5 and 6; the other samples groups L1, L2, L3, L4 were radiated by diode laser using parameters of power 1,0 W; 1,2 W; 1,4 W; and 1,6 W respectively, 2 times for 10 seconds with 20 seconds intervals between each radiation in continuous mode. The results with relation to the increase of temperature in the interior of the root canal demonstrated that there was an increase of more than 5 degree Celsius. The results of the scanning electron microscope analysis of Control Group C demonstrated great irregularity and ridges on the root surface, with the presence of a dentine layer. Control Group C1 presented a similar aspect to Group L 1's, smoother and more homogeneous surface. Groups L2, L3, and L4 presented scratches alternating with smoother areas showing that fiber contacted the surface of the sample. The results reconfirmed the necessity of further studies using diode laser, with a beam of light emitted in an interrupted mode to improve the control of

  16. Pb-induced cellular defense system in the root meristematic cells of Allium sativum L

    Directory of Open Access Journals (Sweden)

    Liu Donghua

    2010-03-01

    Full Text Available Abstract Background Electron microscopy (EM techniques enable identification of the main accumulations of lead (Pb in cells and cellular organelles and observations of changes in cell ultrastructure. Although there is extensive literature relating to studies on the influence of heavy metals on plants, Pb tolerance strategies of plants have not yet been fully explained. Allium sativum L. is a potential plant for absorption and accumulation of heavy metals. In previous investigations the effects of different concentrations (10-5 to 10-3 M of Pb were investigated in A. sativum, indicating a significant inhibitory effect on shoot and root growth at 10-3 to 10-4 M Pb. In the present study, we used EM and cytochemistry to investigate ultrastructural alterations, identify the synthesis and distribution of cysteine-rich proteins induced by Pb and explain the possible mechanisms of the Pb-induced cellular defense system in A. sativum. Results After 1 h of Pb treatment, dictyosomes were accompanied by numerous vesicles within cytoplasm. The endoplasm reticulum (ER with swollen cisternae was arranged along the cell wall after 2 h. Some flattened cisternae were broken up into small closed vesicles and the nuclear envelope was generally more dilated after 4 h. During 24-36 h, phenomena appeared such as high vacuolization of cytoplasm and electron-dense granules in cell walls, vacuoles, cytoplasm and mitochondrial membranes. Other changes included mitochondrial swelling and loss of cristae, and vacuolization of ER and dictyosomes during 48-72 h. In the Pb-treatment groups, silver grains were observed in cell walls and in cytoplasm, suggesting the Gomori-Swift reaction can indirectly evaluate the Pb effects on plant cells. Conclusions Cell walls can immobilize some Pb ions. Cysteine-rich proteins in cell walls were confirmed by the Gomori-Swift reaction. The morphological alterations in plasma membrane, dictyosomes and ER reflect the features of detoxification

  17. Response of Arabidopsis thaliana Roots with Altered Lipid Transfer Protein (LTP) Gene Expression to the Clubroot Disease and Salt Stress

    OpenAIRE

    Sabine Jülke; Jutta Ludwig-Müller

    2015-01-01

    The clubroot disease of Brassicaceae is caused by the obligate biotrophic protist Plasmodiophora brassicae. The disease is characterized by abnormal tumorous swellings of infected roots that result in reduced drought resistance and insufficient distribution of nutrients, leading to reduced crop yield. It is one of the most damaging diseases among cruciferous crops worldwide. The acquisition of nutrients by the protist is not well understood. Gene expression profiles in Arabidopsis thaliana cl...

  18. Hydrotropism in pea roots in a porous-tube water delivery system.

    Science.gov (United States)

    Takahashi, H; Brown, C S; Dreschel, T W; Scott, T K

    1992-05-01

    Orientation of root growth on earth and under microgravity conditions can possibly be controlled by hydrotropism--growth toward a moisture source in the absence of or reduced gravitropism. A porous-tube water delivery system being used for plant growth studies is appropriate for testing this hypothesis since roots can be grown aeroponically in this system. When the roots of the agravitropic mutant pea ageotropum (Pisum sativum L.) were placed vertically in air of 91% relative humidity and 2 to 3 mm from the water-saturated porous tube placed horizontally, the roots responded hydrotropically and grew in a continuous arch along the circular surface of the tube. By contrast, normal gravitropic roots of Alaska' pea initially showed a slight transient curvature toward the tube and then resumed vertical downward growth due to gravitropism. Thus, in microgravity, normal gravitropic roots could respond to a moisture gradient as strongly as the agravitropic roots used in this study. Hydrotropism should be considered a significant factor responsible for orientation of root growth in microgravity. PMID:11537612

  19. Response of Arabidopsis thaliana Roots with Altered Lipid Transfer Protein (LTP) Gene Expression to the Clubroot Disease and Salt Stress.

    Science.gov (United States)

    Jülke, Sabine; Ludwig-Müller, Jutta

    2015-01-01

    The clubroot disease of Brassicaceae is caused by the obligate biotrophic protist Plasmodiophora brassicae. The disease is characterized by abnormal tumorous swellings of infected roots that result in reduced drought resistance and insufficient distribution of nutrients, leading to reduced crop yield. It is one of the most damaging diseases among cruciferous crops worldwide. The acquisition of nutrients by the protist is not well understood. Gene expression profiles in Arabidopsis thaliana clubroots indicate that lipid transfer proteins (LTPs) could be involved in disease development or at least in adaptation to the disease symptoms. Therefore, the aim of the study was to examine the role of some, of the still enigmatic LTPs during clubroot development. For a functional approach, we have generated transgenic plants that overexpress LTP genes in a root specific manner or show reduced LTP gene expression. Our results showed that overexpression of some of the LTP genes resulted in reduced disease severity whereas the lipid content in clubs of LTP mutants seems to be unaffected. Additional studies indicate a role for some LTPs during salt stress conditions in roots of A. thaliana. PMID:27135222

  20. Response of Arabidopsis thaliana Roots with Altered Lipid Transfer Protein (LTP Gene Expression to the Clubroot Disease and Salt Stress

    Directory of Open Access Journals (Sweden)

    Sabine Jülke

    2015-12-01

    Full Text Available The clubroot disease of Brassicaceae is caused by the obligate biotrophic protist Plasmodiophora brassicae. The disease is characterized by abnormal tumorous swellings of infected roots that result in reduced drought resistance and insufficient distribution of nutrients, leading to reduced crop yield. It is one of the most damaging diseases among cruciferous crops worldwide. The acquisition of nutrients by the protist is not well understood. Gene expression profiles in Arabidopsis thaliana clubroots indicate that lipid transfer proteins (LTPs could be involved in disease development or at least in adaptation to the disease symptoms. Therefore, the aim of the study was to examine the role of some, of the still enigmatic LTPs during clubroot development. For a functional approach, we have generated transgenic plants that overexpress LTP genes in a root specific manner or show reduced LTP gene expression. Our results showed that overexpression of some of the LTP genes resulted in reduced disease severity whereas the lipid content in clubs of LTP mutants seems to be unaffected. Additional studies indicate a role for some LTPs during salt stress conditions in roots of A. thaliana.

  1. Multitrophic interaction in the rhizosphere of maize: root feeding of Western corn rootworm larvae alters the microbial community composition.

    Directory of Open Access Journals (Sweden)

    Flavia Dematheis

    Full Text Available BACKGROUND: Larvae of the Western Corn Rootworm (WCR feeding on maize roots cause heavy economical losses in the US and in Europe. New or adapted pest management strategies urgently require a better understanding of the multitrophic interaction in the rhizosphere. This study aimed to investigate the effect of WCR root feeding on the microbial communities colonizing the maize rhizosphere. METHODOLOGY/PRINCIPAL FINDINGS: In a greenhouse experiment, maize lines KWS13, KWS14, KWS15 and MON88017 were grown in three different soil types in presence and in absence of WCR larvae. Bacterial and fungal community structures were analyzed by denaturing gradient gel electrophoresis (DGGE of the 16S rRNA gene and ITS fragments, PCR amplified from the total rhizosphere community DNA. DGGE bands with increased intensity were excised from the gel, cloned and sequenced in order to identify specific bacteria responding to WCR larval feeding. DGGE fingerprints showed that the soil type and the maize line influenced the fungal and bacterial communities inhabiting the maize rhizosphere. WCR larval feeding affected the rhiyosphere microbial populations in a soil type and maize line dependent manner. DGGE band sequencing revealed an increased abundance of Acinetobacter calcoaceticus in the rhizosphere of several maize lines in all soil types upon WCR larval feeding. CONCLUSION/SIGNIFICANCE: The effects of both rhizosphere and WCR larval feeding seemed to be stronger on bacterial communities than on fungi. Bacterial and fungal community shifts in response to larval feeding were most likely due to changes of root exudation patterns. The increased abundance of A. calcoaceticus suggested that phenolic compounds were released upon WCR wounding.

  2. 32 CFR Appendix B to Part 323 - Criteria for New and Altered Record Systems

    Science.gov (United States)

    2010-07-01

    ... alterations. b. Increases in numbers of individuals due to normal growth are not considered alterations unless... enlisted personnel to include all of DLA enlisted personnel would be considered an alteration). d. A... a new or altered system to DLA Support Services (DSS-CA) before collecting information and for...

  3. Root Responses to Boron Deficiency Mediated by Ethylene

    OpenAIRE

    González-Fontes, Agustín; Herrera-Rodríguez, M. B.; Martín-Rejano, Esperanza M.; Navarro-Gochicoa, M. T.; Rexach, Jesús; Camacho-Cristóbal, Juan J.

    2016-01-01

    Low boron (B) supply alters the architecture of the root system in Arabidopsis thaliana seedlings, leading to a reduction in the primary root growth and an increase in the length and number of root hairs. At short-term (hours), B deficiency causes a decrease in the cell elongation of the primary root, resulting in a lower growth. Experimental approaches using ethylene insensitive Arabidopsis mutants, inhibitors of ethylene response, and GUS reporter lines suggest that ethylene is involved in ...

  4. Cultivation of ginseng root cultures in various reactor systems

    Czech Academy of Sciences Publication Activity Database

    Langhansová, Lenka; Vaněk, Tomáš

    Tampere: BBI, 2004 - (Sorvari, S.), s. 54-60 ISBN 952-99302-0-8. [International Congress on Bioreactor Technology in Cell, Tissue Culture and Biomedical Applications /1./. Tampere (FI), 14.07.2003-18.07.2003] R&D Projects: GA MŠk OC 843.10; GA ČR GP521/02/P064; GA MŠk ME 671 Institutional research plan: CEZ:AV0Z4055905 Keywords : Panax ginseng * adventitious roots * ginsenosides Subject RIV: EI - Biotechnology ; Bionics

  5. Altered dendritic arborization of amygdala neurons in young adult rats orally intubated with Clitorea ternatea aqueous root extract.

    Science.gov (United States)

    Rai, Kiranmai S; Murthy, K Dilip; Rao, Muddanna S; Karanth, K Sudhakar

    2005-07-01

    Young adult (60 day old) Wistar rats of either sex were orally intubated with 50 mg/kg body weight and 100 mg/kg body weight of aqueous root extract of Clitoria ternatea (CTR) for 30 days, along with age-matched saline controls. These rats were then subjected to passive avoidance tests and the results from these studies showed a significant increase in passive avoidance learning and retention. Subsequent to the passive avoidance tests, these rats were killed by decapitation. The amygdala was processed for Golgi staining and the stained neurons were traced using a camera lucida and analysed. The results showed a significant increase in dendritic intersections, branching points and dendritic processes arising from the soma of amygdaloid neurons in CTR treated rats especially in the 100 mg/kg group of rats, compared with age-matched saline controls. This improved dendritic arborization of amygdaloid neurons correlates with the increased passive avoidance learning and memory in the CTR treated rats as reported earlier. The results suggest that Clitoria ternatea aqueous root extract enhances memory by increasing the functional growth of neurons of the amygdala. PMID:16161034

  6. Root restriction: A tool for improving volume utilization efficiency in bioregenerative life-support systems

    Science.gov (United States)

    Graham, Thomas; Wheeler, Raymond

    2016-06-01

    The objective of this study was to evaluate root restriction as a tool to increase volume utilization efficiency in spaceflight crop production systems. Bell pepper plants (Capsicum annuum cv. California Wonder) were grown under restricted rooting volume conditions in controlled environment chambers. The rooting volume was restricted to 500 ml and 60 ml in a preliminary trial, and 1500 ml (large), 500 ml (medium), and 250 ml (small) for a full fruiting trial. To reduce the possible confounding effects of water and nutrient restrictions, care was taken to ensure an even and consistent soil moisture throughout the study, with plants being watered/fertilized several times daily with a low concentration soluble fertilizer solution. Root restriction resulted in a general reduction in biomass production, height, leaf area, and transpiration rate; however, the fruit production was not significantly reduced in the root restricted plants under the employed environmental and horticultural conditions. There was a 21% reduction in total height and a 23% reduction in overall crown diameter between the large and small pot size in the fruiting study. Data from the fruiting trial were used to estimate potential volume utilization efficiency improvements for edible biomass in a fixed production volume. For fixed lighting and rooting hardware situations, the majority of improvement from root restriction was in the reduction of canopy area per plant, while height reductions could also improve volume utilization efficiency in high stacked or vertical agricultural systems.

  7. Alterations of reproduction system in a polyploidized cassava interspecific hybrid.

    Science.gov (United States)

    Nassar, Nagib M A; Graciano-Ribeiro, Dalva; Gomes, Paula F; Hashimoto, Danielle Y C

    2010-04-01

    The objective of this research was to examine how much polyploidy may affect seed and root formation in cassava interspecific hybrids Manihot esculenta Crantz xM. oligantha Pax. A polyploid type was induced by colchicine treatment to lateral buds followed by propagating vegetatively arising stems. Cytogenetic and anatomical analyses were made on both polyploid and diploid types. The polyploid type showed extensive chromosome pairing and pollen viability. Multiembryonic ovule frequency increased in polyploid plants. Stalks became woody and propagation through roots difficult, the edible roots increased, however, in size. PMID:20536543

  8. Impact of treated wastewater on growth, respiration and hydraulic conductivity of citrus root systems in light and heavy soils.

    Science.gov (United States)

    Paudel, Indira; Cohen, Shabtai; Shaviv, Avi; Bar-Tal, Asher; Bernstein, Nirit; Heuer, Bruria; Ephrath, Jhonathan

    2016-06-01

    Roots interact with soil properties and irrigation water quality leading to changes in root growth, structure and function. We studied these interactions in an orchard and in lysimeters with clay and sandy loam soils. Minirhizotron imaging and manual sampling showed that root growth was three times lower in the clay relative to sandy loam soil. Treated wastewater (TWW) led to a large reduction in root growth with clay (45-55%) but not with sandy loam soil (system. The phenology and physiology of root orders were studied in lysimeters. Soil type influenced diameter, specific root area, tissue density and cortex area similarly in all root orders, while TWW influenced these only in clay soil. Respiration rates were similar in both soils, and root hydraulic conductivity was severely reduced in clay soil. Treated wastewater increased respiration rate and reduced hydraulic conductivity of all root orders in clay but only of the lower root orders in sandy loam soil. Loss of hydraulic conductivity increased with root order in clay and clay irrigated with TWW. Respiration and hydraulic properties of all root orders were significantly affected by sodium-amended TWW in sandy loam soil. These changes in root order morphology, anatomy, physiology and hydraulic properties indicate rapid and major modifications of root systems in response to differences in soil type and water quality. PMID:27022106

  9. Farming system context drives the value of deep wheat roots in semi-arid environments.

    Science.gov (United States)

    Lilley, Julianne M; Kirkegaard, John A

    2016-06-01

    The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1-0.6 t ha(-1) when annually reset, to 0-0.2 t ha(-1) in the continuous simulation due to a legacy of drier soils (mean 0-32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha(-1) from more extensive root systems were rare (3-10% of years) at sites with shallow soils (water uptake (14-31 vs 2-17mm) and mean yield increase (up to 0.7 vs 0-0.2 t ha(-1)) and the benefits occurred on deep and shallow soils and in more years (9-79 vs 3-44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. PMID:26976814

  10. Root system distribution and yield of 'Conilon' coffee propagated by seeds or cuttings

    Directory of Open Access Journals (Sweden)

    Fábio Luiz Partelli

    2014-05-01

    Full Text Available The objective of this work was to evaluate the root system distribution and the yield of 'Conilon' coffee (Coffea canephora propagated by seeds or cuttings. The experiment was carried out with 2x1 m spacing, in an Oxisol with sandy clay loam texture. A randomized complete block design was used, following a 2x9x6 factorial arrangement, with two propagation methods (seeds and cuttings, nine sampling spacings (0.15, 0.30, 0.45, 0.60, 0.75, and 0.90 m between rows, and 0.15, 0.30, and 0.45 between plants within rows, six soil depths (0.10-0.20, 0.20-0.30, 0.30-0.40, 0.40-0.50, and 0.50-0.60 m, and six replicates. Soil cores (27 cm3 with roots were taken from 12 experimental units, 146 months after planting. The surface area of the root system and root diameter, length, and volume were assessed for 13 years and, then, correlated with grain yield. The highest fine root concentration occurred at the superficial soil layers. The variables used to characterize the root system did not differ between propagation methods. Moreover, no differences were observed for net photosynthetic CO2 assimilation rate, stomatal conductance, internal CO2 concentrations, and instantaneous water-use efficiency in the leaves. Cutting-propagated plants were more productive than seed-propagated ones.

  11. Effect of cropping system and mineral fertilizer on root yield of cassava

    International Nuclear Information System (INIS)

    The objective of this study was to evaluate the effect of cropping system and fertilizer on the root yield of three introduced high yielding cassava varieties (Afisiafi, Abasafitaa and Tekbankye) and two local varieties (Tuakentenma and Akosuatumtum). Two cropping systems (sole cassava and cassava-maize intercrop and five fertilizer regimes (0-0-0, 30-30-30, 60-60-60, 90-90-90 and 120-120-120 kg ha-I N-P2O5-K2O) were studied in 2000 and 2001. A split-split plot design with four replications was used in the first study and a split-plot design for the second. Cassava-maize intercrop significantly reduced root yield at Mampong (2000) and Asuansi (2001) but not at Wenchi (2001). Afisiafi and Abasafitaa performed better than the local varieties or Tekbankye. At Asuansi and Kpeve, Afisiafi gave significantly greater root yield than Abasafitaa. Root yields of Afisiafi and Abasafita were, however, similar at Mampong and Wenchi in 2000. At Wenchi (2001), Abasafitaa gave significantly greater root yield than Atisiafi. At Mampong (2000) and Wenchi (2001), Afisiafi produced significantly more roots per stand than the local varieties and Abasafitaa gave significantly greater root yield per stand than the local variety. At all the four sites mineral fertilizer resulted in significantly greater root yield over control. At Asuansi (2001), Kpeve (2001) and Mampong (2000), 60-60-60 kg ha-1 N-P2O3-K2O gave significantly greater root yield than the 30-30-30 kg N-P2O5-K2O ha-1 but similar to the 90-90-90 and 120-120-120 kg ha-1 N-P2O5-K2O. At Wenchi (2001) all the rates gave similar root yield. Across locations, Afisiafi and Abasafitaa produced greater root yield than the local varieties and Tekbankye. Mineral fertilizer at 60-60-60 kg ha-1 N-P2O5-K2O was the optimum level for root yields. (au)

  12. A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

    Science.gov (United States)

    Marasco, Ramona; Rolli, Eleonora; Ettoumi, Besma; Vigani, Gianpiero; Mapelli, Francesca; Borin, Sara; Abou-Hadid, Ayman F.; El-Behairy, Usama A.; Sorlini, Claudia; Cherif, Ameur; Zocchi, Graziano; Daffonchio, Daniele

    2012-01-01

    Background Traditional agro-systems in arid areas are a bulwark for preserving soil stability and fertility, in the sight of “reverse desertification”. Nevertheless, the impact of desert farming practices on the diversity and abundance of the plant associated microbiome is poorly characterized, including its functional role in supporting plant development under drought stress. Methodology/Principal Findings We assessed the structure of the microbiome associated to the drought-sensitive pepper plant (Capsicum annuum L.) cultivated in a traditional Egyptian farm, focusing on microbe contribution to a crucial ecosystem service, i.e. plant growth under water deficit. The root system was dissected by sampling root/soil with a different degree of association to the plant: the endosphere, the rhizosphere and the root surrounding soil that were compared to the uncultivated soil. Bacterial community structure and diversity, determined by using Denaturing Gradient Gel Electrophoresis, differed according to the microhabitat, indicating a selective pressure determined by the plant activity. Similarly, culturable bacteria genera showed different distribution in the three root system fractions. Bacillus spp. (68% of the isolates) were mainly recovered from the endosphere, while rhizosphere and the root surrounding soil fractions were dominated by Klebsiella spp. (61% and 44% respectively). Most of the isolates (95%) presented in vitro multiple plant growth promoting (PGP) activities and stress resistance capabilities, but their distribution was different among the root system fractions analyzed, with enhanced abilities for Bacillus and the rhizobacteria strains. We show that the C. annuum rhizosphere under desert farming enriched populations of PGP bacteria capable of enhancing plant photosynthetic activity and biomass synthesis (up to 40%) under drought stress. Conclusions/Significance Crop cultivation provides critical ecosystem services in arid lands with the plant root

  13. A drought resistance-promoting microbiome is selected by root system under desert farming.

    Directory of Open Access Journals (Sweden)

    Ramona Marasco

    Full Text Available BACKGROUND: Traditional agro-systems in arid areas are a bulwark for preserving soil stability and fertility, in the sight of "reverse desertification". Nevertheless, the impact of desert farming practices on the diversity and abundance of the plant associated microbiome is poorly characterized, including its functional role in supporting plant development under drought stress. METHODOLOGY/PRINCIPAL FINDINGS: We assessed the structure of the microbiome associated to the drought-sensitive pepper plant (Capsicum annuum L. cultivated in a traditional Egyptian farm, focusing on microbe contribution to a crucial ecosystem service, i.e. plant growth under water deficit. The root system was dissected by sampling root/soil with a different degree of association to the plant: the endosphere, the rhizosphere and the root surrounding soil that were compared to the uncultivated soil. Bacterial community structure and diversity, determined by using Denaturing Gradient Gel Electrophoresis, differed according to the microhabitat, indicating a selective pressure determined by the plant activity. Similarly, culturable bacteria genera showed different distribution in the three root system fractions. Bacillus spp. (68% of the isolates were mainly recovered from the endosphere, while rhizosphere and the root surrounding soil fractions were dominated by Klebsiella spp. (61% and 44% respectively. Most of the isolates (95% presented in vitro multiple plant growth promoting (PGP activities and stress resistance capabilities, but their distribution was different among the root system fractions analyzed, with enhanced abilities for Bacillus and the rhizobacteria strains. We show that the C. annuum rhizosphere under desert farming enriched populations of PGP bacteria capable of enhancing plant photosynthetic activity and biomass synthesis (up to 40% under drought stress. CONCLUSIONS/SIGNIFICANCE: Crop cultivation provides critical ecosystem services in arid lands with the

  14. Maternal bisphenol A alters fetal endocrine system: Thyroid adipokine dysfunction.

    Science.gov (United States)

    Ahmed, R G

    2016-09-01

    Because bisphenol A (BPA) has been detected in animals, the aim of this study was to investigate the possible effects of maternal BPA exposure on the fetal endocrine system (thyroid-adipokine axis). BPA (20 or 40 μg/kg body weight) was orally administered to pregnant rats from gestation day (GD) 1-20. In both treated groups, the dams and their fetuses had lower serum thyroxine (T4) and triiodothyronine (T3) levels, and higher thyrotropin (TSH) level than control dams and fetuses at GD 20. Some histopathological changes in fetal thyroid glands were observed in both maternal BPA groups at embryonic day (ED) 20, including fibroblast proliferation, hyperplasia, luminal obliteration, oedema, and degeneration. These disorders resulted in the suppression of fetal serum growth hormone (GH), insulin growth factor-1 (IGF1) and adiponectin (ADP) levels, and the elevation of fetal serum leptin, insulin and tumor necrosis factor-alpha (TNFα) levels in both treated groups with respect to control. The depraved effects of both treated groups were associated with reduced maternal and fetal body weight compared to the control group. These alterations were dose dependent. Thus, BPA might penetrate the placental barrier and perturb the fetal thyroid adipokine axis to influence fat metabolism and the endocrine system. PMID:27326465

  15. Molecular alteration of a muscarinic acetylcholine receptor system during synaptogenesis

    International Nuclear Information System (INIS)

    Biochemical properties of the muscarinic acetylcholine receptor system of the avian retina were found to change during the period when synapses form in ovo. Comparison of ligand binding to membranes obtained before and after synaptogenesis showed a significant increase in the affinity, but not proportion, of the high affinity agonist-binding state. There was no change in receptor sensitivity to antagonists during this period. Pirenzepine binding, which can discriminate muscarinic receptor subtypes, showed the presence of a single population of low affinity sites (M2) before and after synaptogenesis. The change in agonist binding was not due to the late development of receptor function. However, detergent-solubilization of membranes eliminated differences in agonist binding between receptors from embryos and hatched chicks, suggesting a developmental change in interactions of the receptor with functionally related membrane components. A possible basis for altered interactions was obtained from isoelectric point data showing that the muscarinic receptor population underwent a transition from a predominantly low pI form (4.25) in 13 day embryos to a predominantly high pI form (4.50) in newly hatched chicks. The possibility that biochemical changes in the muscarinic receptor play a role in differentiation of the system by controlling receptor position on the surface of nerve cells is discussed

  16. Computational Hemodynamic Simulation of Human Circulatory System under Altered Gravity

    Science.gov (United States)

    Kim. Chang Sung; Kiris, Cetin; Kwak, Dochan

    2003-01-01

    A computational hemodynamics approach is presented to simulate the blood flow through the human circulatory system under altered gravity conditions. Numerical techniques relevant to hemodynamics issues are introduced to non-Newtonian modeling for flow characteristics governed by red blood cells, distensible wall motion due to the heart pulse, and capillary bed modeling for outflow boundary conditions. Gravitational body force terms are added to the Navier-Stokes equations to study the effects of gravity on internal flows. Six-type gravity benchmark problems are originally presented to provide the fundamental understanding of gravitational effects on the human circulatory system. For code validation, computed results are compared with steady and unsteady experimental data for non-Newtonian flows in a carotid bifurcation model and a curved circular tube, respectively. This computational approach is then applied to the blood circulation in the human brain as a target problem. A three-dimensional, idealized Circle of Willis configuration is developed with minor arteries truncated based on anatomical data. Demonstrated is not only the mechanism of the collateral circulation but also the effects of gravity on the distensible wall motion and resultant flow patterns.

  17. Root system characteristics of Marandu palisadegrass supplied with nitrogen and magnesium rates

    Directory of Open Access Journals (Sweden)

    Tiago Barreto Garcez

    2011-07-01

    Full Text Available The development of root system of forage grasses is influenced by the supply of mineral nutrients. The experiment was carried out in a greenhouse in Piracicaba, São Paulo State, with the objective of evaluating the effect of nitrogen and magnesium rates on dry mass yield, total length and surface, specific length and surface, and concentrations of nitrogen, magnesium, calcium and potassium in the root system of Brachiaria brizantha Stapf. cv. Marandu. It was studied five rates of nitrogen (2, 9, 16, 23 and 30 mmol L-1 and five rates of magnesium (0.05, 0.70, 1.35, 2.00 and 2.65 mmol L-1 in nutrient solutions in an incomplete 5² factorial arrangement, which resulted in the following combinations: 2/0.05; 2/1.35; 2/2.65; 9/0.70; 9/2.00; 16/0.05; 16/1.35; 16/2.65; 23/0.70; 23/2.00; 30/0.05; 30/1.35 and 30/2.65. The experimental design was a randomized block with four replications. Plants had two growth periods, and after the second harvest the roots were separated from the plant tops. Combination of the high rates of nitrogen and magnesium resulted in expressive increases in rooty dry matter yield, in the length and in the root surface of marandu palisadegrass. High rates of nitrogen and magnesium resulted in short root specific length and surface. Combinations of high rates of nitrogen and magnesium increased nitrogen concentration or decreased potassium concentration in the roots. Calcium concentration in the roots was increased by nitrogen rates and decreased by magnesium rates. Magnesium rates resulted in increase in magnesium concentration in the roots of marandu palisadegrass.

  18. Toward a Low-Cost System for High-Throughput Image-Based Phenotyping of Root System Architecture

    Science.gov (United States)

    Davis, T. W.; Schneider, D. J.; Cheng, H.; Shaw, N.; Kochian, L. V.; Shaff, J. E.

    2015-12-01

    Root system architecture is being studied more closely for improved nutrient acquisition, stress tolerance and carbon sequestration by relating the genetic material that corresponds to preferential physical features. This information can help direct plant breeders in addressing the growing concerns regarding the global demand on crops and fossil fuels. To help support this incentive comes a need to make high-throughput image-based phenotyping of plant roots, at the individual plant scale, simpler and more affordable. Our goal is to create an affordable and portable product for simple image collection, processing and management that will extend root phenotyping to institutions with limited funding (e.g., in developing countries). Thus, a new integrated system has been developed using the Raspberry Pi single-board computer. Similar to other 3D-based imaging platforms, the system utilizes a stationary camera to photograph a rotating crop root system (e.g., rice, maize or sorghum) that is suspended either in a gel or on a mesh (for hydroponics). In contrast, the new design takes advantage of powerful open-source hardware and software to reduce the system costs, simplify the imaging process, and manage the large datasets produced by the high-resolution photographs. A newly designed graphical user interface (GUI) unifies the system controls (e.g., adjusting camera and motor settings and orchestrating the motor motion with image capture), making it easier to accommodate a variety of experiments. During each imaging session, integral metadata necessary for reproducing experiment results are collected (e.g., plant type and age, growing conditions and treatments, camera settings) using hierarchical data format files. These metadata are searchable within the GUI and can be selected and extracted for further analysis. The GUI also supports an image previewer that performs limited image processing (e.g., thresholding and cropping). Root skeletonization, 3D reconstruction and

  19. Major Alterations of the Regulation of Root NO3− Uptake Are Associated with the Mutation of Nrt2.1 and Nrt2.2 Genes in Arabidopsis1

    Science.gov (United States)

    Cerezo, Miguel; Tillard, Pascal; Filleur, Sophie; Muños, Stéphane; Daniel-Vedele, Françoise; Gojon, Alain

    2001-01-01

    The role of AtNrt2.1 and AtNrt2.2 genes, encoding putative NO3− transporters in Arabidopsis, in the regulation of high-affinity NO3− uptake has been investigated in the atnrt2 mutant, where these two genes are deleted. Our initial analysis of the atnrt2 mutant (S. Filleur, M.F. Dorbe, M. Cerezo, M. Orsel, F. Granier, A. Gojon, F. Daniel-Vedele [2001] FEBS Lett 489: 220–224) demonstrated that root NO3− uptake is affected in this mutant due to the alteration of the high-affinity transport system (HATS), but not of the low-affinity transport system. In the present work, we show that the residual HATS activity in atnrt2 plants is not inducible by NO3−, indicating that the mutant is more specifically impaired in the inducible component of the HATS. Thus, high-affinity NO3− uptake in this genotype is likely to be due to the constitutive HATS. Root 15NO3− influx in the atnrt2 mutant is no more derepressed by nitrogen starvation or decrease in the external NO3− availability. Moreover, the mutant also lacks the usual compensatory up-regulation of NO3− uptake in NO3−-fed roots, in response to nitrogen deprivation of another portion of the root system. Finally, exogenous supply of NH4+ in the nutrient solution fails to inhibit 15NO3− influx in the mutant, whereas it strongly decreases that in the wild type. This is not explained by a reduced activity of NH4+ uptake systems in the mutant. These results collectively indicate that AtNrt2.1 and/or AtNrt2.2 genes play a key role in the regulation of the high-affinity NO3− uptake, and in the adaptative responses of the plant to both spatial and temporal changes in nitrogen availability in the environment. PMID:11553754

  20. Uptake and localisation of lead in the root system of Brassica juncea

    International Nuclear Information System (INIS)

    The uptake and distribution of Pb sequestered by hydroponically grown (14 days growth) Brassica juncea (3 days exposure; Pb activities 3.2, 32 and 217 μM) was investigated. Lead uptake was restricted largely to root tissue. Examination using scanning transmission electron microscopy-energy dispersive spectroscopy revealed substantial and predominantly intracellular uptake at the root tip. Endocytosis of Pb at the plasma membrane was not observed. A membrane transport protein may therefore be involved. In contrast, endocytosis of Pb into a subset of vacuoles was observed, resulting in the formation of dense Pb aggregates. Sparse and predominantly extracellular uptake occurred at some distance from the root tip. X-ray photoelectron spectroscopy confirmed that the Pb concentration was greater in root tips. Heavy metal rhizofiltration using B. juncea might therefore be improved by breeding plants with profusely branching roots. Uptake enhancement using genetic engineering techniques would benefit from investigation of plasma membrane transport mechanisms. - The sites of Pb sequestration within the root system of hydroponically grown Brassica juncea were identified

  1. Deciphering Phosphate Deficiency-Mediated Temporal Effects on Different Root Traits in Rice Grown in a Modified Hydroponic System

    Science.gov (United States)

    Negi, Manisha; Sanagala, Raghavendrarao; Rai, Vandna; Jain, Ajay

    2016-01-01

    Phosphate (Pi), an essential macronutrient for growth and development of plant, is often limiting in soils. Plants have evolved an array of adaptive strategies including modulation of root system architecture (RSA) for optimal acquisition of Pi. In rice, a major staple food, RSA is complex and comprises embryonically developed primary and seminal roots and post-embryonically developed adventitious and lateral roots. Earlier studies have used variant hydroponic systems for documenting the effects of Pi deficiency largely on primary root growth. Here, we report the temporal effects of Pi deficiency in rice genotype MI48 on 15 ontogenetically distinct root traits by using easy-to-assemble and economically viable modified hydroponic system. Effects of Pi deprivation became evident after 4 days- and 7 days-treatments on two and eight different root traits, respectively. The effects of Pi deprivation for 7 days were also evident on different root traits of rice genotype Nagina 22 (N22). There were genotypic differences in the responses of primary root growth along with lateral roots on it and the number and length of seminal and adventitious roots. Notably though, there were attenuating effects of Pi deficiency on the lateral roots on seminal and adventitious roots and total root length in both these genotypes. The study thus revealed both differential and comparable effects of Pi deficiency on different root traits in these genotypes. Pi deficiency also triggered reduction in Pi content and induction of several Pi starvation-responsive (PSR) genes in roots of MI48. Together, the analyses validated the fidelity of this modified hydroponic system for documenting Pi deficiency-mediated effects not only on different traits of RSA but also on physiological and molecular responses. PMID:27200025

  2. Developmental Alterations in Heart Biomechanics and Skeletal Muscle Function in Desmin Mutants Suggest an Early Pathological Root for Desminopathies

    Directory of Open Access Journals (Sweden)

    Caroline Ramspacher

    2015-06-01

    Full Text Available Desminopathies belong to a family of muscle disorders called myofibrillar myopathies that are caused by Desmin mutations and lead to protein aggregates in muscle fibers. To date, the initial pathological steps of desminopathies and the impact of desmin aggregates in the genesis of the disease are unclear. Using live, high-resolution microscopy, we show that Desmin loss of function and Desmin aggregates promote skeletal muscle defects and alter heart biomechanics. In addition, we show that the calcium dynamics associated with heart contraction are impaired and are associated with sarcoplasmic reticulum dilatation as well as abnormal subcellular distribution of Ryanodine receptors. Our results demonstrate that desminopathies are associated with perturbed excitation-contraction coupling machinery and that aggregates are more detrimental than Desmin loss of function. Additionally, we show that pharmacological inhibition of aggregate formation and Desmin knockdown revert these phenotypes. Our data suggest alternative therapeutic approaches and further our understanding of the molecular determinants modulating Desmin aggregate formation.

  3. Detection of 3D tree root systems using high resolution ground penetration radar

    Science.gov (United States)

    Altdorff, D.; Honds, M.; Botschek, J.; Van Der Kruk, J.

    2014-12-01

    Knowledge of root systems and its distribution are important for biomass estimation as well as for the prevention of subsurface distribution network damages. Ground penetration radar (GPR) is a promising technique that enables a non-invasive imaging of tree roots. Due to the polarisation-dependent reflection coefficients and complicated three-dimensional root structure, accurate measurements with perpendicularly polarized antennas are needed. In this study, we show GPR data from two planes and one chestnut at two locations with different soil conditions. Perpendicular 10 x 10 cm grid measurements were made with a shielded 250 MHz antenna in combination with a high precision self-tracking laser theodolite that provides geo-referenced traces with a spatial resolution of ~ 2 cm. After selecting potential root hyperbolas within the perpendicular GPR profiles, the corresponding three-dimensional coordinates were extracted and visualized in planar view to reveal any linear structure that indicates a possible tree root. The coordinates of the selected linear structures were projected back to the surface by means of the laser-theodolite to indicate the locations for groundtruthing. Additionally, we interpolated the measured data into a 3D cube where time slices confirmed the locations of linear reflection events. We validated the indicated predictions by excavation of the soil with a suction dredge. Subsequent georeferencing of the true root distribution and comparison with the selected linear events showed that the approach was able to identify the precise position of roots with a diameter between 3 and 10 cm and a depth of up to 70 cm. However, not all linear events were roots; also mouse channels were found in these depths, since they also generate GPR hyperbolas aligned in linear structures. Roots at a second location at depths of 1 to 1.20 m did not generate identifiable hyperboles, which was probably due to an increased electrical conductivity below 86 cm depth. The

  4. R7T7 glass alteration mechanism in an aqueous closed system: understanding and modelling the long term alteration kinetic

    International Nuclear Information System (INIS)

    The long term alteration rate of the French R7T7 nuclear glass has been investigated since many years because it will define the overall resistance of the radionuclide containment matrix. Recent studies have shown that the final rate remains constant or is slightly decreasing with time. It never reaches zero. Though this residual rate is very low, only 5 nm per year at 50 C, it would be the dominant alteration phenomenon in a geological repository. Two mechanisms are suggested for explaining such behaviour: diffusion in solution of elements from glass through an amorphous altered layer and precipitation of neo-formed phases. The diffusion processes are in agreement with a solid state diffusion mechanism and can lead to secondary phase precipitation due to solution concentration increases. Observed phases are mainly phyllosilicates and zeolites, in specific conditions. Phyllosilicates are expected to maintain the residual kinetic rate whereas alteration resumption could be observed in presence of zeolites at very high pH or temperature (10.5 at 90 C or temperature above 150 C). Both diffusion and neo-formed phase precipitation have been investigated in order to better understand their impact on the residual alteration rate and have then been modelled by a calculation code, coupling chemistry and transport, in order to be able to better anticipate the long term behaviour of the glass R7T7 in an aqueous closed system. (author)

  5. Modeling water uptake by a root system growing in a fixed soil volume

    CERN Document Server

    Albrieu, J L Blengino; Tarzia, D A

    2015-01-01

    The water uptake by roots of plants is examined for an ideal situation, with an approximation that resembles plants growing in pots, meaning that the total soil volume is fixed. We propose a coupled water uptake-root growth model. A one-dimensional model for water flux and water uptake by a root system growing uniformly distributed in the soil is presented, and the Van Genuchten model for the transport of water in soil is used. The governing equations are represented by a moving boundary model for which the root length, as a function of time, is prescribed. The solution of the model is obtained by front-fixing and finite element methods. Model predictions for water uptake by a same plant growing in loam, silt and clay soils are obtained and compared. A sensitivity analysis to determine relative effects on water uptake when system parameters are changed is also presented and shows that the model and numerical method proposed are more sensitive to the root growth rate than to the rest of the parameters. This se...

  6. Investigation of plant water relations with divided root systems of soybean.

    Science.gov (United States)

    Michel, B E; Elsharkawi, H M

    1970-11-01

    Soybean (Glycine max) was grown with root systems divided between adjacent cartons containing nutrient solution or soil. By adding polyethylene glycol (Carbowax 6000) to reduce solute potential or withholding water to reduce soil matric potential until water absorption from that side stopped, the root xylem water potential could be ascertained. Carbowax appeared to increase root resistance. An imbalance technique is described with which soil moisture contents of adjacent containers were followed individually. The patterns of water absorption obtained following repeated additions of water or addition of CaCl(2) solutions to one side indicated soil hydraulic conductivity became limiting at a soil water potential of -2 bars. A high concentration of CaCl(2) added to one side greatly reduced transpiration and produced severe plant injury. With part of the root system developing in nutrient solution, growth of roots into and water absorption from soil were slow; however, reduction of solute potential in the solution side greatly increased water absorption from the soil side. PMID:16657537

  7. Ideotype root architecture for efficient nitrogen acquisition by maize in intensive cropping systems

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    The use of nitrogen(N) fertilizers has contributed to the production of a food supply sufficient for both animals and humans despite some negative environmental impact.Sustaining food production by increasing N use efficiency in intensive cropping systems has become a major concern for scientists,environmental groups,and agricultural policymakers worldwide.In high-yielding maize systems the major method of N loss is nitrate leaching.In this review paper,the characteristic of nitrate movement in the soil,N uptake by maize as well as the regulation of root growth by soil N availability are discussed.We suggest that an ideotype root architecture for efficient N acquisition in maize should include(i) deeper roots with high activity that are able to uptake nitrate before it moves downward into deep soil;(ii) vigorous lateral root growth under high N input conditions so as to increase spatial N availability in the soil;and(iii) strong response of lateral root growth to localized nitrogen supply so as to utilize unevenly distributed nitrate especially under limited N conditions.

  8. Fruit yield and root system distribution of 'Tommy Atkins' mango under different irrigation regimes

    Directory of Open Access Journals (Sweden)

    Marcelo R. dos Santos

    2014-04-01

    Full Text Available This study aimed to evaluate the fruit yield and the distribution of 'Tommy Atkins' mango root system under different irrigation regimes in the semiarid region of Bahia. The experimental design was completely randomized with five treatments and three replicates: 1 - Irrigation supplying 100% of ETc in phases I, II and III; 2 - Regulated deficit irrigation (RDI supplying 50% of ETc in phase I (beginning of flowering to early fruit growth; 3 - RDI supplying 50% ETc in phase II (start of expansion until the beginning of physiological maturity; 4 - RDI supplying 50% ETc in phase III (physiological mature fruits; 5 - No irrigation during all three phases. The regulated deficit irrigation supplying 50% of the ETc during phase I and II provided larger root length density of 'Tommy Atkins' mango. Regardless of management strategy, the roots were developed in all evaluated soil volume and the highest density is concentrated from 0.50 to 1.50 m distance from the trunk and in 0.20 to 0.90 m depth in the soil, that suggests this region to be the best place for fertilizer application as well for soil water sensor placement. The application of RDI during fruit set does not influence either root distribution or production. Root system and crop production is significantly reduced under no irrigation conditions.

  9. Studying Gestures: The Iconic Roots of Human Communication Systems

    OpenAIRE

    Ioannou, Charis

    2011-01-01

    This paper tests the hypothesis that the iconicity inherent in human gestures can be a key element in the creation and evolution of communication systems. An interactive experiment based on playing charades was conducted modelling a situation where a multimodal (gesture + sound) and semiotically mixed (non‐arbitrary + arbitrary) communication system evolves through social collaboration. The experimental design was based on Garrod and colleagues’ (2007) modelling of iconic graphical signals...

  10. Distribution of the root system of peach palm under drip irrigation

    Directory of Open Access Journals (Sweden)

    Adriano da Silva Lopes

    2014-07-01

    Full Text Available The incorporation of technologies has resulted in increased productivity and the more rational management of peach palm, with irrigation being an important tool for certain regions. Thus, studies leading to proper crop management are extremely important, such as the estimate of the effective depth of the root system, which is indispensable for proper irrigation management. The objective of this study was to evaluate the effects of different irrigation depths, as applied by drip irrigation, on the distribution of the root system of peach palm. This experiment was conducted in Ilha Solteira, São Paulo State, Brazil, with drip irrigation, with the two systems (flow of 0.0023 m3 h-1 consisting of four irrigation treatments corresponding to 0, 50, 100 and 150% of Class ‘A’ pan evaporation. After five years, an analysis of the Bactris gasipaes root system was performed at a distance of 0.0, 0.5 and 1.0 meters from the trunk, collecting sampling at two depths (0.0 to 0.3 m and 0.3 to 0.6 m via the auger method (volumetric analysis. We concluded that the effective depth of the root system used for irrigation management should be a maximum of 0.3 meters.

  11. Long-Term In Vitro System for Maintenance and Amplification of Root-Knot Nematodes in Cucumis sativus Roots

    OpenAIRE

    Díaz-Manzano, Fernando E.; Olmo, Rocío; Cabrera, Javier; Barcala, Marta; Escobar, Carolina; Fenoll, Carmen

    2016-01-01

    Root-knot nematodes (RKN) are polyphagous plant-parasitic roundworms that produce large crop losses, representing a relevant agricultural pest worldwide. After infection, they induce swollen root structures called galls containing giant cells (GCs) indispensable for nematode development. Among efficient control methods are biotechnology-based strategies that require a deep knowledge of underlying molecular processes during the plant-nematode interaction. Methods of achieving this knowledge in...

  12. Studies using 32P to determine the distribution and activity patterns of the oil palm root system in Nigeria

    International Nuclear Information System (INIS)

    Results of studies of the root distribution and root activity which have been conducted by the Nigerian Institute for Oil Palm Research over the last twenty-three years are presented. Previous laborious studies involving washing the soil from the entire root system have shown that the oil palm root system is typically monocotyledonous with superficial and deeply penetrating primaries, ascending and descending secondaries with numerous tertiaries and quaternaries in the surface layers forming the main feeding roots. Radioisotope studies showed that the greatest concentration and activity of the nutrient absorbing roots occurred within the top 30 cm of soil. There were zones of root concentration and root activity close to the palm. High root activity was also obtained up to 4 m from the palm. During the dry season, the oil palm roots die back thus leading to a reduced zone of root activity. The implications of the findings for fertilizer placement for maximum efficiency of utilization by the whole plantation and the need for further experimentation are discussed. (author)

  13. Deciphering Phosphate Deficiency-Mediated Temporal Effects on Different Root Traits in Rice Grown in a Modified Hydroponic System

    OpenAIRE

    Negi, Manisha; Sanagala, Raghavendrarao; Rai, Vandna; Jain, Ajay

    2016-01-01

    Phosphate (Pi), an essential macronutrient for growth and development of plant, is often limiting in soils. Plants have evolved an array of adaptive strategies including modulation of root system architecture (RSA) for optimal acquisition of Pi. In rice, a major staple food, RSA is complex and comprises embryonically developed primary and seminal roots and post-embryonically developed adventitious and lateral roots. Earlier studies have used variant hydroponic systems for documenting the effe...

  14. A data acquisition and analysis system based on LabVIEW and ROOT

    International Nuclear Information System (INIS)

    An interfacing technology between LabVIEW and ROOT is realized by loading and running the executable file. This technology can make the best of their own advantages of design a powerful and efficient data acquisition and analysis system. This paper ends up with two successful application examples of this interfacing technology: the data acquisition system for the gas ratio monitor and the optical performance test system for the EMC crystal in BESIII. (authors)

  15. Effects of linuron on a rooted aquatic macrophyte in sediment-dosed test systems

    NARCIS (Netherlands)

    Buresova, H.; Crum, S.J.H.; Belgers, J.D.M.; Adriaanse, P.I.; Arts, G.H.P.

    2013-01-01

    Effects of linuron on the sediment-rooted aquatic macrophyte Myriophyllum spicatum L. were studied in sediment-dosed test systems following a proposed guideline with extended test duration. Sediment, pore water, overlying water and macrophyte shoots were sampled weekly for chemical analyses. Linuron

  16. Lentil root protoplasts: a transient expression system suitable for coelectroporation of monoclonal antibodies and plasmid molecules

    NARCIS (Netherlands)

    Vliegenthart, J.F.G.; Maccarrone, M.; Veldink, G.A.; Finazzi Agrò, A.

    1995-01-01

    Protoplasts were isolated from lentil (Lens culinaris) roots and their suitability as a transient expression system was investigated. After transfecting the protoplasts with the -glucuronidase (GUS) gene by either electroporation or polyethylene glycol (PEG), the specific activity of the reporter en

  17. Can Crops with Greater Rooting Systems Improve Nitrogen Retention and Mitigate Emissions of Nitrous Oxide?

    Science.gov (United States)

    Decock, Charlotte; Lee, Juhwan; Barthel, Matti; Mikita, Chris; Wilde, Benjamin; Verhoeven, Elizabeth; Hund, Andreas; Abiven, Samuel; Friedli, Cordula; Conen, Franz; Mohn, Joachim; Wolf, Benjamin; Six, Johan

    2016-04-01

    It has been suggested that crops with deeper root systems could improve agricultural sustainability, because scavenging of nitrogen (N) in the subsoil would increase overall N retention and use efficiency in the system. However, the effect of plant root depth and root architecture on N-leaching and emissions of the potent greenhouse N2O remains largely unknown. We aimed to assess the effect of plant rooting depth on N-cycling and N2O production and reduction within the plant-soil system and throughout the soil profile. We hypothesized that greater root depth and root biomass will (1) increase N use efficiency and decrease N losses in the form of N leaching and N2O emissions; (2) increase N retention by shifting the fate of NH4+ from more nitrification toward more plant uptake and microbial immobilization; and (3) increase the depth of maximum N2O production and decrease the ratio of N2O:(N2O+N2) in denitrification end-products. To test these hypotheses, 4 winter wheat cultivars were grown in lysimeters (1.5 m tall, 0.5 m diameter, 3 replications per cultivar) under greenhouse conditions. Each lysimeter was equipped with an automated flux chamber for the determination of N2O surface fluxes. At 7.5, 30, 60, 90 and 120 cm depth, sampling ports were installed for the determination of soil moisture contents, as well as the collection of soil pore air and soil pore water samples. We selected two older and two newer varieties from the Swiss winter wheat breeding program, spanning a 100-year breeding history. The selection was based on previous experiments indicating that the older varieties have deeper rooting systems than the newer varieties under well watered conditions. N2O fluxes were determined twice per day on a quantum cascade laser absorption spectrometer interfaced with the automated flux chambers. Once per week, we determined concentrations of mineral N in pore water and of CO2 and N2O in the pore air. For mineral N and N2O, also natural abundance isotope deltas

  18. Soil chemical properties, organic reserves and root system of a degraded pasture associated introduction of legume

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo Santos Fabrice

    2014-09-01

    Full Text Available The aim was to study the recovery of degraded pasture with the introduction of Stylosanthes macrocephala e capitata cv. Campo Grande on Brachiaria decumbens cv. Basilisk evaluating the levels N-total in roots, biomass, area, and length, diameter and root levels of macro and micronutrients in the soil. The experiment was conducted in the municipality of Andradina, São Paulo State, Brazil. The experimental design was a randomized block design in a split-plot (with and without phosphorus, with four replicates, forming the following treatments: control Brachiaria decumbens (CB, partial desiccation with 1.5 L ha-1 of glyphosate (DP, total desiccation with 3.0 L ha-1 of glyphosate (TD; tillage (T, soil scarification (S; harrowing rome (H and plowing + disking (PD. Treatments H and PD were sown by broadcasting and the other in the form of direct seeding. Recovery strategies of grazing signal grass showed significant differences between treatments only for the content of N-total, there were no differences in geometric characteristics of roots and root biomass. The contents of macro and micronutrients in the soil showed no significant differences between the strategies of recovery. Fertilization had a significant effect for P. The introduction of estilosantes Campo Grande accompanied by techniques such as drying and plowing + disking contributed to increases in the N-total levels in the root system. Forms of introduction of legumes did not change the soil chemical properties.

  19. Altering contingencies to facilitate compliance with traffic light systems

    OpenAIRE

    Jason, Leonard A.; Neal, Angela M.; Marinakis, George

    1985-01-01

    The effects of altering light pattern sequences on driver compliance at a busy, urban intersection were explored. The baseline light timing sequences resulted in only 46.8% of drivers stopping at the yellow or red lights. Using an A-B-C design, we altered light pattern sequences that increased the probability of drivers stopping at the signals to 88.8% and 98.8%. These findings indicate that traffic light contingencies have potent effects in influencing driver behaviors at busy intersections....

  20. The root/rhizome system of seagrasses: an asset and a burden

    Science.gov (United States)

    Hemminga, M. A.

    1998-06-01

    Large-scale declines in seagrass vegetation have been frequently observed in recent decades. Many of these declines can be traced to the reduction of light levels in the water column. In this paper, it is argued that the root/rhizome system offers a competitive advantage in nutrient-poor waters, but that it makes the plant vulnerable when changes in water quality lead to reduction of incident light. Seagrasses are capable of exploiting the nutrient stocks of both the water column and the sediment pore water, by leaves and roots, respectively. A survey of the literature shows that the median concentrations of water-column ammonium and phosphate in seagrass beds worldwide are 1.7 and 0.35 μM, respectively, whereas the same compounds in the pore water of the root zone reach median concentrations of 60 and 6.5 μM. The dual possibilities for nutrient uptake may underlie the apparent lack of strongly developed nutrient conservation strategies in seagrasses. The possession of roots becomes a disadvantage when the photosynthetically active radiation available to the plants decreases. At saturating light levels, the maximum rate of net photosynthesis (measured as O 2 production) of the leaves typically exceeds leaf respiration (measured as O 2 consumption) about 5 times. In low-light environments, the respiring below-ground biomass (which can greatly exceed the above-ground biomass) can be a considerable burden to the carbon balance of the plant, limiting its survival potential. In addition, secondary and tertiary effects of light reduction involving the roots and rhizomes may undermine plant vitality as well. Leaf photosynthesis is the major source of oxygen for the roots and rhizomes. Hence, decreased photosynthetic activity following light reduction may lead to hypoxic or anoxic conditions in the below-ground organs, presumably making them vulnerable to carbon starvation. A decreased flux of oxygen to the roots and rhizomes also restricts the possibilities for

  1. Deficits in foot skin sensation are related to alterations in balance control in chronic low back patients experiencing clinical signs of lumbar nerve root impingement.

    Science.gov (United States)

    Frost, Lydia R; Bijman, Marc; Strzalkowski, Nicholas D J; Bent, Leah R; Brown, Stephen H M

    2015-05-01

    Chronic low back pain (LBP) patients with radiculopathy, or sciatica, experience pain, tingling or numbness radiating down their leg due to compression of the lumbar nerve root. The resulting reduction in somatosensory information from the foot sole may contribute to deficits in standing balance control. This work was designed to investigate the relationship between foot skin sensitivity and standing balance control in chronic LBP patients with associated radiculopathy. Patients (n=9) and matched healthy controls (n=9) were recruited to the study, and were tested for balance control in both quiet standing as well as during rapid arm raise perturbation trials on a force plate. Foot skin sensitivity was tested bilaterally for vibratory threshold (3, 40 and 250 Hz) and touch (monofilament) threshold. Results demonstrate that patients had reduced sensitivity to 250 Hz vibration in their affected compared to unaffected foot (at the great toe and heel), as well as compared to controls (at the great toe), but there were no differences with lower frequency vibratory testing or with monofilament testing. While there were no significant between-group differences in balance measures, moderate statistically significant correlations between 250 Hz sensitivity and quiet standing balance parameters were uncovered. Thus, patients demonstrate reduced high-frequency vibratory sensitivity at the foot sole, and correlations with quiet standing balance measures indicate a connection between these foot skin sensitivity deficits and alterations in balance control. Clinically, this identifies high frequency vibration testing as an important measure of skin sensitivity in patients with radiculopathy. PMID:25887249

  2. Roots of Magmatic Systems of Large Continental Igneous Provinces

    Science.gov (United States)

    Sharkov, E. V.

    2014-12-01

    It is consensus now that appearance of the large igneous provinces (LIP) is considered with ascending of mantle superplumes. It is evident that beneath LIPs was not exited magma oceans and adiabatic melting occurred in heads of protuberances on their surface (local, or secondary plumes), which can reach relatively shallow levels. The least known element of magmatic system is area of magma generation and meltedsources. Important information about it is contained in the mantle xenoliths in alkali basalts. They are represented by two series: (1) "green": spinel peridotite (maily lherzolite) and minor spinel pyroxenite (websterite), and (2) "black" (veins in the peridotite matrix): wehrlite, Al-Ti-augite and hornblende clinopyroxenite, hornblendite, phlogopitite, etc, which crystallized from fluid-saturated melts or high-density fluid. Very likely, that these fluids, enriched in Fe, Ti, alkalis and incompatible elements, were parts of intergranular material of original plume material and were released due to its decompression; evidently, they provided specific composition of plume-related melts. Both types of xenoliths represent material of plume head and accordingly - the melting substratum. One of problem of plume-related magmatism is coexisting of alkali and tholeiitic basalts, which origin often considered with different PT conditions. However, this situation can be explained another way. Because fluid components, acting jointly or separately, impregnated the peridotite matrix nonuniform, it led to heterogeneous composition of smelted magmas, and primary melts can have different composition even though be forming at similar PT conditions. According to Yoder and Tilley (1962), even small differences in SiO2 content lead to different ways in evolution of magmas due to critical plane of silica undersaturation. As a result, one magmas will develop to Ne enrichment (alkali basalts) and another - to silica direction (tholeiite basalts.

  3. Tree growth and management in Ugandan agroforestry systems: effects of root pruning on tree growth and crop yield.

    Science.gov (United States)

    Wajja-Musukwe, Tellie-Nelson; Wilson, Julia; Sprent, Janet I; Ong, Chin K; Deans, J Douglas; Okorio, John

    2008-02-01

    Tree root pruning is a potential tool for managing belowground competition when trees and crops are grown together in agroforestry systems. We investigated the effects of tree root pruning on shoot growth and root distribution of Alnus acuminata (H.B. & K.), Casuarina equisetifolia L., Grevillea robusta A. Cunn. ex R. Br., Maesopsis eminii Engl. and Markhamia lutea (Benth.) K. Schum. and on yield of adjacent crops in sub-humid Uganda. The trees were 3 years old at the commencement of the study, and most species were competing strongly with crops. Tree roots were pruned 41 months after planting by cutting and back-filling a trench to a depth of 0.3 m, at a distance of 0.3 m from the trees, on one side of the tree row. The trench was reopened and roots recut at 50 and 62 months after planting. We assessed the effects on tree growth and root distribution over a 3 year period, and crop yield after the third root pruning at 62 months. Overall, root pruning had only a slight effect on aboveground tree growth: height growth was unaffected and diameter growth was reduced by only 4%. A substantial amount of root regrowth was observed by 11 months after pruning. Tree species varied in the number and distribution of roots, and C. equisetifolia and M. lutea had considerably more roots per unit of trunk volume than the other species, especially in the surface soil layers. Casuarina equisetifolia and M. eminii were the tree species most competitive with crops and G. robusta and M. lutea the least competitive. Crop yield data provided strong evidence of the redistribution of root activity following root pruning, with competition increasing on the unpruned side of tree rows. Thus, one-sided root pruning will be useful in only a few circumstances. PMID:18055434

  4. Migration law of heavy metal cadmium in soil-root interface systems

    Institute of Scientific and Technical Information of China (English)

    Jin-Xiang YANG; Ming-Xu ZHANG; Xiao-Long LI; Liang-Min GAO; Duo-Xi YAO

    2013-01-01

    The distribution characteristics of heavy metals in soil-root systems have great significance for the research into soil pollution risk assessment and the phytoremediation effect.This paper takes ligustrum lucidum as an example,based on the characteristics of adsorption of heavy metals in soil by woody plants,lays out sampling points,and using software Sufer for the Kiging interpolation analysis,and the horizontal migration law of heavy metal cadmium in the soil-root interface system is simulated.Through multi-model statistical regression trend analysis,the horizontal migration mechanism of cadmium in different sections is discussed.The results show that:① under horizontal migration law:the migration ability of Cd is weaker near the Ligustrum lucidum root (0-30 cm); with the root extension,the migration ability of Cd gradually is strengthened,and the main range of the migration ability is 60 90 cm.In addition,its migration law follows the cubic curve mode.② under longitudinal migration law:based on the Kriging method,migration models Z(hi) of heavy metal Cd in any depth of hi are constructed and fit the correlation coefficient R2>0.95.

  5. Effects of Local Nitrogen Supply on Water Uptake of Bean Plants in a Split Root System

    Institute of Scientific and Technical Information of China (English)

    Shiwei Guo; Qirong Shen; Holger Brueck

    2007-01-01

    To study the effects of local nitrogen supply on water and nutrient absorption, French bean (Phaseolus vulgaris L.)plants were grown in a split root system. Five treatments supplied with different nitrogen forms were compared:homogeneous nitrate (NN) and homogenous ammonium (AA) supply, spatially separated supply of nitrate and ammonium (NA), half of the root system supplied with N-free nutrient solution, the other half with either nitrate (NO) or ammonium (AO). The results showed that 10 d after onset of treatments, root dry matter (DM) in the nitratesupplied vessels treated with NA was more than two times higher than that in the ammonium-supplied vessels.Water uptake from the nitrate-supplied vessels treated with NA was 281% higher than under ammonium supply. In treatments NO and AO, the local supply of N resulted in clearly higher root DM, and water uptake from the nitratesupplied vessels was 82% higher than in the -N vessels. However, in AO plants, water uptake from the -N nutrient solution was 129% higher than from the ammonium-supplied vessels. This indicates a compensatory effect, which resulted in almost identical rates of total water uptake of treatments AA and AO, which had comparable shoot DM and leaf area. Ammonium supply reduced potassium and magnesium absorption. Water uptake was positively correlated with N, Mg and K uptake.

  6. Conditions for Resilient Operations of Complex Systems Undergoing Technological Alterations

    OpenAIRE

    Tveiten, Camilla Knudsen

    2014-01-01

    Technological alterations are ongoing in many areas, also in high-risk industries. The petroleum production industry in Norway is going through a technologicallydriven transition period named “Integrated Operations” (IO). The transition includes changes in sensor technology that increase the amount of data provided for important decisions, information and communication technology that enable the remote operation of offshore fields and distributed organizations, and possibilities for operation...

  7. Root cause analysis of accidents on large-scale complex systems using Dual Vee Model

    International Nuclear Information System (INIS)

    Root cause analyses of system failures are important from a viewpoint of prevention of recurrence of the failures and occurrence of similar failures. Five-why Analysis and Fault Tree Analysis are most popular however these analysis results depend on the skill of the analysts strongly because these use brain-storming method. The authors have proposed a root cause analysis method using Dual Vee Model, which has given a guidance in space systems applications to analyze and therefore the result less depends on the skill of the analyst. This paper demonstrates the results of the application of the method of failures of Nuclear Power Plants. This paper also proposes a chart to identify systems to which the method can be applied. (author)

  8. Recent Advances in Understanding the Molecular Mechanisms Regulating the Root System Response to Phosphate Deficiency in Arabidopsis.

    Science.gov (United States)

    Bouain, Nadia; Doumas, Patrick; Rouached, Hatem

    2016-08-01

    Phosphorus (P) is an essential macronutrient for plant growth and development. Inorganic phosphate (Pi) is the major form of P taken up from the soil by plant roots. It is well established that under Pi deficiency condition, plant roots undergo striking morphological changes; mainly a reduction in primary root length while increase in lateral root length as well as root hair length and density. This typical phenotypic change reflects complex interactions with other nutrients such as iron, and involves the activity of a large spectrum of plant hormones. Although, several key proteins involved in the regulation of root growth under Pi-deficiency have been identified in Arabidopsis, how plants adapt roots system architecture in response to Pi availability remains an open question. In the current post-genomic era, state of the art technologies like high-throughput phenotyping and sequencing platforms,"omics" methods, together with the widespread use of system biology and genome-wide association studies will help to elucidate the genetic architectures of root growth on different Pi regimes. It is clear that the large-scale characterization of molecular systems will improve our understanding of nutrient stress phenotype and biology. Herein, we summarize the recent advances and future directions towards a better understanding of Arabidopsis root developmental programs functional under Pi deficiency. Such a progress is necessary to devise strategies to improve the Pi use efficiency in plants that is an important issue for agriculture. PMID:27499680

  9. Vertical distribution of the root system of linseed (Linum usitatissimum L. and legumes in pure and mixed sowing

    Directory of Open Access Journals (Sweden)

    Agnieszka Klimek-Kopyra

    2015-03-01

    Full Text Available Root competition for below-ground resources between edible plants may provide for long-term sustainability of agriculture systems. Intercropping can be more productive than a pure crop due to taking advantage of the morphological differences between species. In pure cropping, all biophysical interactions between plants occur through soil conditions. In intercropping, competition for water and nutrients is of major importance, but if the roots of one species occupy the zone just underneath the roots of the other crop, they can better use the resources of the root zone of the crop. The root system demonstrates a high degree of plasticity in its development in response to local heterogeneity of the soil profile and plant density. This study aimed at determining: (i the morphological characteristics of the root systems of linseed, pea and vetch depending on the method of sowing; (ii the root distribution in various soil types and at different soil profile depths (0–15 cm, 15–30 cm. Two three-year field experiments were conducted on two soil types in south Poland: soil A – Luvic Phaeozem (s1 and soil B – Eutric Cambisol (s2. These results show that linseed was more aggressive toward both legumes in mixture, but it produced lower yield compared to pure cropping. The environmental stress of plants in mixtures increased the relative weight of roots, which resulted in decreasing the root-shoot ratio (RSR.

  10. A New Adaptive Square-Root Unscented Kalman Filter for Nonlinear Systems with Additive Noise

    Directory of Open Access Journals (Sweden)

    Yong Zhou

    2015-01-01

    Full Text Available The Kalman filter (KF, extended KF, and unscented KF all lack a self-adaptive capacity to deal with system noise. This paper describes a new adaptive filtering approach for nonlinear systems with additive noise. Based on the square-root unscented KF (SRUKF, traditional Maybeck’s estimator is modified and extended to nonlinear systems. The square root of the process noise covariance matrix Q or that of the measurement noise covariance matrix R is estimated straightforwardly. Because positive semidefiniteness of Q or R is guaranteed, several shortcomings of traditional Maybeck’s algorithm are overcome. Thus, the stability and accuracy of the filter are greatly improved. In addition, based on three different nonlinear systems, a new adaptive filtering technique is described in detail. Specifically, simulation results are presented, where the new filter was applied to a highly nonlinear model (i.e., the univariate nonstationary growth model (UNGM. The UNGM is compared with the standard SRUKF to demonstrate its superior filtering performance. The adaptive SRUKF (ASRUKF algorithm can complete direct recursion and calculate the square roots of the variance matrixes of the system state and noise, which ensures the symmetry and nonnegative definiteness of the matrixes and greatly improves the accuracy, stability, and self-adaptability of the filter.

  11. Regulation of Root Length and Lateral Root Number in Trifoliate Orange Applied by Peroxide Hydrogen and Arbuscular Mycorrhizal Fungi

    OpenAIRE

    LIU, CHUN-YAN; Huang, Yong-Ming; Ying-Ning ZOU; Wu, Qiang-Sheng

    2014-01-01

    Root system morphology (RSM) in plants plays a key role in acquiring nutrients from the soil and is also altered by abiotic or biotic factors including soil microorganisms and signal molecules. The present study was made to evaluate the effects of an arbuscular mycorrhizal fungus (AMF, Glomus versiforme) and exogenous peroxide hydrogen (H2O2, 0, 1 and 100 μM) on root length, lateral root number and activities of polyamine-metabolized enzymes in trifoliate orange (Poncirus trifoliata) see...

  12. Adjustment of Forest Ecosystem Root Respiration as Temperature Warms

    Institute of Scientific and Technical Information of China (English)

    Andrew J. Burton; Jerry M. Melillo; Serita D. Frey

    2008-01-01

    Adjustment of ecosystem root respiration to warmer climatic conditions can alter the autotrophic portion of soil respiration and influence the amount of carbon available for biomass production. We examined 44 published values of annual forest root respiration and found an increase in ecosystem root respiration with increasing mean annual temperature (MAT),but the rate of this cross-ecosystem increase (Q10 = 1.6) is less than published values for short-term responses of root respiration to temperature within ecosystems (Q10 = 2-3). When specific root respiration rates and root biomass values were examined, there was a clear trend for decreasing root metabolic capacity (respiration rate at a standard temperature) with increasing MAT. There also were tradeoffs between root metabolic capacity and root system biomass, such that there were no instances of high growing season respiration rates and high root biomass occurring together. We also examined specific root respiration rates at three soil warming experiments at Harvard Forest, USA, and found decreases in metabolic capacity for roots from the heated plots. This decline could be due to either physiological acclimation or to the effects of co-occurring drier soils on the measurement date. Regardless of the cause, these findings clearly suggest that modeling efforts that allow root respiration to increase exponentially with temperature, with Qt0 values of 2 or more, may over-predict root contributions to ecosystem CO2 efflux for future climates and underestimate the amount of C available for other uses,including net primary productivity.

  13. X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture.

    Science.gov (United States)

    Rogers, Eric D; Monaenkova, Daria; Mijar, Medhavinee; Nori, Apoorva; Goldman, Daniel I; Benfey, Philip N

    2016-07-01

    Root system architecture (RSA) impacts plant fitness and crop yield by facilitating efficient nutrient and water uptake from the soil. A better understanding of the effects of soil on RSA could improve crop productivity by matching roots to their soil environment. We used x-ray computed tomography to perform a detailed three-dimensional quantification of changes in rice (Oryza sativa) RSA in response to the physical properties of a granular substrate. We characterized the RSA of eight rice cultivars in five different growth substrates and determined that RSA is the result of interactions between genotype and growth environment. We identified cultivar-specific changes in RSA in response to changing growth substrate texture. The cultivar Azucena exhibited low RSA plasticity in all growth substrates, whereas cultivar Bala root depth was a function of soil hardness. Our imaging techniques provide a framework to study RSA in different growth environments, the results of which can be used to improve root traits with agronomic potential. PMID:27208237

  14. The impact of roots on soil organic carbon dynamics in annual and perennial agricultural systems

    Science.gov (United States)

    Beniston, J.; Dupont, T.; Glover, J.; Lal, R.

    2012-12-01

    Identifying and developing agricultural systems capable of transferring large quantities of carbon (C) to the soil and sustaining ecosystem processes and services is a priority for ecological researchers and land managers. Temperate grasslands have extensive root systems and transfer large quantities of C to the soil organic C (SOC) pool, which has lead to widespread interest in utilizing perennial grasses as both bioenergy crops and as a model for perennial grains. This study examined five sites in north central Kansas (U.S.A.) that contain the unique land use pairing of tall grass prairie meadows (PM) that have been harvested annually for hay for the past 75 years and annual grain (wheat) production fields (AG) that have been cultivated for a similar length of time, all on deep alluvial soils. Specific research objectives included: 1) To quantify below-ground biomass pools and root C contributions in the two systems; 2) To analyze and compare SOC pools and SOC concentration in primary particle size fractions in the two systems; 3) To utilize natural abundance δ13C signatures to determine the source and turnover of SOC in the soils of the AG sites; and 4) To elucidate the relationship of roots to both SOC pools and nematode food webs. Soil core samples were collected to a depth of 1 m in May and June 2008. Soil samples were analyzed for SOC, microbial biomass C (MBC), nematodes, and a particle size fractionation of SOC in coarse (>250 μm), particulate organic matter (POM) (53-250 μm), silt (2-53 μm), and clay (food web dynamics at these sites. Collectively, the data presented in this study demonstrate the potential of production systems based on perennial grasses to transfer greater quantities of C to SOC pools than annual crops, through larger C allocations to root and microbial pools.

  15. Characterization of the bacterial flora associated with root systems of Pinus contorta var. latifolia.

    Science.gov (United States)

    Dangerfield, J A; Westlake, D W; Cook, F D

    1978-12-01

    Root systems of young and mature lodgepole pine (Pinus contorta Dougl. var. latifolia Englem.) were removed from forest stands and the associated aerobic bacterial flora isolated. Characterization of rhizoplane and control soil isolates from these tree root systems demonstrated differences from that reported for agricultural crops. Ammonifying, proteolytic, and amylolytic organisms were proportionately reduced within the rhizoplane. The rhizoplane organisms grew more slowly than the control soil isolates, although they responded in greater numbers to the addition of an amino acid supplement to the growth media. The rhizoplane organisms also showed an increased ability to solubilize phosphate. The chitinolytic organisms were suppressed within the rhizoplane of the mature tree but were stimulated by the young trees. With this exception, the rhizoplane microflora of older and younger trees were similar. PMID:747813

  16. Systemic distribution of sup 14 C-labeled formaldehyde applied in the root canal following pulpectomy

    Energy Technology Data Exchange (ETDEWEB)

    Hata, G.I.; Nishikawa, I.; Kawazoe, S.; Toda, T.

    1989-11-01

    The systemic distribution of {sup 14}C-labeled formaldehyde which had been placed in the root canals of the canines of cats following pulpectomies was studied using liquid scintillation counting and whole-body autoradiographic technique. Radioactive {sup 14}C which had been placed in the canals was found in the plasma 30 min after the root canal procedure. The recovery of systemic {sup 14}C radioactivity increased with time. In addition, it seemed that approximately 3% of the dose placed in the teeth was excreted in the urine within 36 h. Whole-body autoradiograms indicated extensive concentration of {sup 14}C radioactivity in tissues other than those analyzed with the liquid scintillation technique.

  17. The distribution of phosphorus in the root systems of the Proteaceae and the identification of their rhizosphere and rhizoplane fungi

    International Nuclear Information System (INIS)

    The soil mycoflora of an acidic sandy soil at Pella in S.W. Cape, South Africa, was determined by the soil plate technique. The fungal populations of the rhizosphere and rhizoplane of root systems of Hakea sericea and Leucospermum parile, members of the Proteaceae growing in the soil were isolated by the serial root washing technique. The root systems of H. sericea and L. parile supported a more varied mycoflora than the non-rhizosphere soil. Members of the Ascomycotina were restricted to the rhizosphere and rhizoplane region and were absent from the non-rhizosphere soil. Different forms of phosphorus (P) containing compounds were extracted and fractionated from proteoid and non-proteoid roots of H. sericea seedlings grown in P amended Clovelly sand. The main P fractions of both proteoid and non-proteoid roots were lipid-P and orthophosphate. The phosphorus 32 uptake of the roots were also investigated. An acid labile trichloracetic acid soluble BaCl2 precipitate was present. Polyacrylamide gel electrophoresis and paper chromatography of the phenol detergent extracts of the root systems of H. sericea and Leucadendron laureolum (Proteaceae) failed to detect polyphosphate. It is concluded that the acid labile trichloracetic acid soluble BaCl2 precipitate fraction extracted from the root systems of the Proteaceae is non-nucleotide ester-P

  18. TEMPERATURE-RESPIRATION RELATIONSHIPS DIFFER IN MYCORRHIZAL AND NON-MYCORRHIZAL ROOT SYSTEMS OF PICEA ABIES (L.) KARST.

    Science.gov (United States)

    Root respiration has been shown to increase with temperature, but less is known about how this relation ship is affected by the fungal partner in mycorrhizal root systems. In order to test respiratory temperature dependence, in particular Q10 of mycorrhizal and non-mycorrhizal r...

  19. An application of the square-root information filter to large scale linear interconnected systems

    Science.gov (United States)

    Bierman, G. J.

    1978-01-01

    The paper considers the use of numerically stable square-root information filter (SRIF) algorithms to reduce the computation and storage requirements of a certain class of large-scale linear interconnected systems (multistation satellite tracking is examined as an example). The reductions are in comparison with conventional sequential covariance type formulations. To illustrate the SRIF algorithm: a 40 subsystem, 10 state problem, for example, has its storage requirements reduced by a full order of magnitude (from 84255 to 8100).

  20. Induced Systemic Resistance in Arabidopsis thaliana in Response to Root Inoculation with Pseudomonas fluorescens CHA0

    OpenAIRE

    Iavicoli, Annalisa; Boutet, Emmanuel; Buchala, Antony; Métraux, Jean-Pierre

    2006-01-01

    Root inoculation of Arabidopsis thaliana ecotype Columbia with Pseudomonas fluorescens CHA0r partially protected leaves from the oomycete Peronospora parasitica. The molecular determinants of Pseudomonas fluorescens CHA0r for this induced systemic resistance (ISR) were investigated, using mutants derived from strain CHA0: CHA400 (pyoverdine deficient), CHA805 (exoprotease deficient), CHA77 (HCN deficient), CHA660 (pyoluteorin deficient), CHA631 (2,4-diacetylphloroglucinol [DAPG] deficient), a...

  1. Characterization of the soil fertility and root system of restinga forests

    Directory of Open Access Journals (Sweden)

    Rodolfo Martins Bonilha

    2012-12-01

    Full Text Available The Restinga vegetation consists of a mosaic of plant communities, which are defined by the characteristics of the substrates, resulting from the type and age of the depositional processes. This mosaic complex of vegetation types comprises restinga forest in advanced (high restinga and medium regeneration stages (low restinga, each with particular differentiating vegetation characteristics. The climate along the coast is tropical (Köppen. Of all ecosystems of the Atlantic Forest, Restinga is the most fragile and susceptible to anthropic disturbances. Plants respond to soil characteristics with physiological and morphological modifications, resulting in changes in the architecture (spatial configuration of the root system. The purpose of this study was to characterize the soil fertility of high and low restinga forests, by chemical and physical parameters, and its relation to the root system distribution in the soil profile. Four locations were studied: (1 Ilha Anchieta State Park, Ubatuba; (2 two Ecological Stations of Jureia-Itatins and of Chauás, in the municipality of Iguape; (3 Vila de Pedrinhas in the municipality of Ilha Comprida; and (4 Ilha do Cardoso State Park, Cananeia. The soil fertility (chemical and physical properties was analyzed in the layers 0-5, 0-10, 0-20, 20-40 and 40-60 cm. In addition, the distribution of the root system in the soil profile was evaluated, using digital images and the Spring program. It was concluded that the root system of all vegetation types studied is restricted to the surface layers, 0-10 and 10-20 cm, but occupies mainly the 0-10 cm layer (70 %; that soil fertility is low in all environments studied, with base saturation values below 16 %, since most exchange sites are occupied by aluminum; and that restinga vegetation is edaphic.

  2. Dynamics of organic matters in the root-rhizoplane-soil system of maize [Zea mays], 1: A simple and rapid method for measuring root respiration

    International Nuclear Information System (INIS)

    In the analysis of dynamics of organic matter in the root-rhizoplane-soil system, it is essential to estimate various kinds of carbon flows in the system separately. Since a simple and rapid method for measuring root respiration was needed for this purpose, the authors developed the following method. A plastic syringe is used as the chamber. Sample roots are put into a syringe, in which the air is replaced with air of known CO2 concentration and the syringe is kept at a constant temperature for a certain time. A volume of the air in the syringe is injected into the flow of N2 gas in the tube which is connected to an infrared gas analyzer. The CO2 concentration in the syringe is directly related to the reading of the analyzer. From the difference of the CO2 concentration in the syringe before and after the incubation, the respiration rate of the roots is calculated. The details of the procedure were determined by the results of experiments regarding the effects of factors concerned. (author)

  3. Photoactivated disinfection (PAD) of dental root canal system – An ex-vivo study

    Science.gov (United States)

    Mohan, Dennis; Maruthingal, Sunith; Indira, Rajamani; Divakar, Darshan Devang; Al Kheraif, Abdulaziz Abdullah; Ramakrishnaiah, Ravikumar; Durgesh, B.H.; Basavarajappa, Santhosh; John, Jacob

    2015-01-01

    Aim To investigate the efficacy of photo activated disinfection (PAD) in reducing colony-forming unit (CFU) counts of Enterococcus faecalis (E. faecalis) in infected dental root canals. The study compared the efficacy of PAD with conventional endodontic treatment (CET) and also a combination of CET along with PAD. Material and Methods 53 maxillary incisors were taken for the study. Teeth were divided into 3 groups, CET (Group I) (n = 11), PAD (Group II) (n = 21), and a combination of CET and PAD (Group III) which consisted of (n = 21) samples, Group II and Group III were further divided into 2 subgroups, Group IIa, IIb and Group IIIa, IIIb. Strains of E. faecalis were inoculated in all the root canals. CET group samples were treated by chemo-mechanical preparation (CMP) alone, PAD samples were treated with laser alone at 2 different exposure time (4 min and 2 min). In the combination treatment, samples were treated initially by CET and then by PAD for a time period of 4 min and 2 min. Contents of the root canal were aspirated, diluted and plated in Tryptone Soya Broth (TSB) and plates were incubated for 24 h to observe the bacterial regrowth. Results Showed PAD used along with CMP reduced the bacterial load of E. faecalis by 99.5% at 4 min and 98.89% at 2 min. Conclusion PAD may be an adjunctive procedure to kill residual bacteria in the dental root canal systems after standard endodontic root canal preparation. PMID:26858548

  4. Primitive Liquid Water of the Solar System in an Aqueous Altered Carbonaceous Chondrite

    Science.gov (United States)

    Tsuchiyama, A.; Miyake, A.; Kitayama, A.; Matsuno, J.; Takeuchi, A.; Uesugi, K.; Suzuki, Y.; Nakano, T.; Zolensky, M. E.

    2016-01-01

    Non-destructive 3D observations of the aqueous altered CM chondrite Sutter's Mill using scanning imaging x-ray microscopy (SIXM) showed that some of calcite and enstatite grains contain two-phase inclusion, which is most probably composed of liquid water and bubbles. This water should be primitive water responsible for aqueous alteration in an asteroid in the early solar system.

  5. EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture.

    Science.gov (United States)

    Armengaud, Patrick; Zambaux, Kevin; Hills, Adrian; Sulpice, Ronan; Pattison, Richard J; Blatt, Michael R; Amtmann, Anna

    2009-03-01

    The root system is essential for the growth and development of plants. In addition to anchoring the plant in the ground, it is the site of uptake of water and minerals from the soil. Plant root systems show an astonishing plasticity in their architecture, which allows for optimal exploitation of diverse soil structures and conditions. The signalling pathways that enable plants to sense and respond to changes in soil conditions, in particular nutrient supply, are a topic of intensive research, and root system architecture (RSA) is an important and obvious phenotypic output. At present, the quantitative description of RSA is labour intensive and time consuming, even using the currently available software, and the lack of a fast RSA measuring tool hampers forward and quantitative genetics studies. Here, we describe EZ-Rhizo: a Windows-integrated and semi-automated computer program designed to detect and quantify multiple RSA parameters from plants growing on a solid support medium. The method is non-invasive, enabling the user to follow RSA development over time. We have successfully applied EZ-Rhizo to evaluate natural variation in RSA across 23 Arabidopsis thaliana accessions, and have identified new RSA determinants as a basis for future quantitative trait locus (QTL) analysis. PMID:19000163

  6. Genetic association among root morphology, root quality and root yield in ashwagandha (Withania somnifera)

    OpenAIRE

    Kumar Ramesh R.; Reddy Anjaneya Prasanna L.; Subbaiah Chinna J.; Kumar Niranjana A.; Prasad Nagendra H.N.; Bhukya Balakishan

    2011-01-01

    Ashwagandha (Withania somnifera) is a dryland medicinal crop and roots are used as valuable drug in traditional systems of medicine. Morphological variants (morphotypes) and the parental populations were evaluated for root - morphometric, quality and yield traits to study genetic association among them. Root morphometric traits (root length, root diameter, number of secondary roots/ plant) and crude fiber content exhibited strong association among them and ...

  7. Sistema radicular do vetiver (Vetiveria zizanioides nash. Study of the root system of Vetiver

    Directory of Open Access Journals (Sweden)

    Romeu Inforzato

    1959-01-01

    Full Text Available Em um ensaio de espaçamento x sistema de plantio, instalado na Estação Experimental Central do Instituto Agronômico, em solo tipo terra-roxa-misturada e abrangendo os espaçamentos 90 x 30, 90 x 90. 120 x 30 e 120 x 90cm, com dois sistemas de plantio - ao nível do solo e em leiras - fêz-se o estudo do sistema radicular do vetiver. As conclusões do presente trabalho foram as seguintes: houve maior produção de raízes no sistema de plantio ao nível do solo; nos dois sistemas de plantio o espaçamento 90 x 30cm forneceu as maiores quantidades de raízes; 88% daa raízes estavam localizadas nos primeiros 30cm do solo, não sendo pois necessário ir além de 50cm de profundidade para se extrair a quase totalidade das rafzes produzidas pelo vetiver.The root system of Vetiveria zizanioides Nash, was studied under two different planting systems: 1 soil level and 2 planting hills. Four different spacings were tried: 90 x 30, 90 x 90, 120 x 30 and 120x90 centimeters. Soil level planting gave larger production of roots and the spacing of 90 x 30 cm gave the largest amount of roots under both planting systems. Eighty eight percent of the root weight was found in the upper 30cm of soil.

  8. The mycorrhiza fungus Piriformospora indica induces fast root-surface pH signaling and primes systemic alkalinization of the leaf apoplast upon powdery mildew infection.

    Science.gov (United States)

    Felle, Hubert H; Waller, Frank; Molitor, Alexandra; Kogel, Karl-Heinz

    2009-09-01

    We analyze here, by noninvasive electrophysiology, local and systemic plant responses in the interaction of barley (Hordeum vulgare L.) with the root-colonizing basidiomycete Piriformospora indica. In the short term (seconds, minutes), a constant flow of P. indica chlamydospores along primary roots altered surface pH characteristics; whereas the root-hair zone transiently alkalized-a typical elicitor response-the elongation zone acidified, indicative of enhanced H(+) extrusion and plasma membrane H(+) ATPase stimulation. Eight to 10 min after treating roots with chlamydospores, the apoplastic pH of leaves began to acidify, which contrasts with observations of an alkalinization response to various stressors and microbe-associated molecular patterns (MAMPs). In the long term (days), plants with P. indica-colonized roots responded to inoculation with the leaf-pathogenic powdery mildew fungus Blumeria graminis f. sp. hordei with a leaf apoplastic pH increase of about 2, while the leaf apoplast of noncolonized barley responded to B. graminis f. sp. hordei merely with a pH increase of 0.8. The strong apoplastic pH response is reminiscent of B. graminis f. sp. hordei-triggered pH shifts in resistance gene-mediated resistant barley leaves or upon treatment with a chemical resistance inducer. In contrast, the MAMP N-acetylchito-octaose did not induce resistance to B. graminis f. sp. hordei and did not trigger the primed apoplastic pH shift. We speculate that the primed pH increase is indicative of and supports the potentiated systemic response to B. graminis f. sp. hordei-induced by P. indica in barley. PMID:19656052

  9. Cell patterns emerge from coupled chemical and physical fields with cell proliferation dynamics: the Arabidopsis thaliana root as a study system.

    Directory of Open Access Journals (Sweden)

    Rafael A Barrio

    Full Text Available A central issue in developmental biology is to uncover the mechanisms by which stem cells maintain their capacity to regenerate, yet at the same time produce daughter cells that differentiate and attain their ultimate fate as a functional part of a tissue or an organ. In this paper we propose that, during development, cells within growing organs obtain positional information from a macroscopic physical field that is produced in space while cells are proliferating. This dynamical interaction triggers and responds to chemical and genetic processes that are specific to each biological system. We chose the root apical meristem of Arabidopsis thaliana to develop our dynamical model because this system is well studied at the molecular, genetic and cellular levels and has the key traits of multicellular stem-cell niches. We built a dynamical model that couples fundamental molecular mechanisms of the cell cycle to a tension physical field and to auxin dynamics, both of which are known to play a role in root development. We perform extensive numerical calculations that allow for quantitative comparison with experimental measurements that consider the cellular patterns at the root tip. Our model recovers, as an emergent pattern, the transition from proliferative to transition and elongation domains, characteristic of stem-cell niches in multicellular organisms. In addition, we successfully predict altered cellular patterns that are expected under various applied auxin treatments or modified physical growth conditions. Our modeling platform may be extended to explicitly consider gene regulatory networks or to treat other developmental systems.

  10. Overexpression of wheat gene TaMOR improves root system architecture and grain yield in Oryza sativa.

    Science.gov (United States)

    Li, Bo; Liu, Dan; Li, Qiaoru; Mao, Xinguo; Li, Ang; Wang, Jingyi; Chang, Xiaoping; Jing, Ruilian

    2016-07-01

    Improved root architecture is an effective strategy to increase crop yield. We demonstrate that overexpression of transcription factor gene MORE ROOT (TaMOR) from wheat (Triticum aestivum L.) results in more roots and higher grain yield in rice (Oryza sativa). TaMOR, encoding a plant-specific transcription factor belonging to the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) protein family, is highly conserved in wheat and its wild relatives. In this study, tissue expression patterns indicated that TaMOR mainly localizes to root initiation sites. The consistent gene expression pattern suggests that TaMOR is involved in root initiation. Exogenous auxin treatment induced TaMOR expression without de novo protein biosynthesis. Both in vivo and in vitro experiments demonstrated that TaMOR interacts with TaMOR-related protein TaMRRP, which contains a four-tandem-pentatricopeptide repeat motif. Overexpression of TaMOR led to more lateral roots in Arabidopsis thaliana, and TaMOR-overexpressing rice plants had more crown roots, a longer main panicle, a higher number of primary branches on the main panicle, a higher grain number per plant, and higher yield per plant than the plants of wild type. In general, TaMOR-D-overexpressing lines had larger root systems in Arabidopsis and rice, and produce a higher grain yield per plant. TaMOR therefore offers an opportunity to improve root architecture and increase yield in crop plants. PMID:27229732

  11. Enhancing cytokinin synthesis by overexpressing ipt alleviated drought inhibition of root growth through activating ROS-scavenging systems in Agrostis stolonifera

    OpenAIRE

    Xu, Yi; Burgess, Patrick; Zhang, Xunzhong; Huang, Bingru

    2016-01-01

    Drought stress limits root growth and inhibits cytokinin (CK) production. Increases in CK production through overexpression of isopentenyltransferase (ipt) alleviate drought damages to promote root growth. The objective of this study was to investigate whether CK-regulated root growth was involved in the alteration of reactive oxygen species (ROS) production and ROS scavenging capacity under drought stress. Wild-type (WT) creeping bentgrass (Agrostis stolonifera L. ‘Penncross’) and a transgen...

  12. LSODAR, Ordinary Differential Equation Solver for Stiff or Non-Stiff System with root-finding

    International Nuclear Information System (INIS)

    1 - Description of program or function: LSODAR, written jointly with L. R. Petzold, is a variant of LSODA with a root-finding capability added. Thus it solves problems dy/dt = f with dense or banded Jacobian and automatic method selection, and at the same time, it finds the roots of any of a set of given functions of the form g(t,y). This is often useful for finding stop conditions, or for finding points at which a switch is to be made in the function f. The LSODAR source is commented extensively to facilitate modification. Both a single-precision version and a double-precision version are available. 2 - Methods: It is assumed that the ODEs are given explicitly, so that the system can be written in the form dy/dt = f(t,y), where y is the vector of dependent variables, and t is the independent variable

  13. Concepts and analyses in the CT scanning of root systems and leaf canopies: A timely summary

    Directory of Open Access Journals (Sweden)

    Jonathan A Lafond

    2015-12-01

    Full Text Available Non-medical applications of computed tomography (CT scanning have flourished in recent years, including in Plant Science. This Perspective article on CT scanning of root systems and leaf canopies is intended to be of interest to three categories of readers: those who have not yet tried plant CT scanning, and should find inspiration for new research objectives; readers who are on the learning curve with applications – here is helpful advice for them; and researchers with greater experience – the field is evolving quickly and it is easy to miss aspects. Our conclusion is that CT scanning of roots and canopies is highly demanding in terms of technology, multidisciplinarity and big-data analysis, to name a few areas of expertise, but eventually, the reward for researchers is directly proportional!

  14. Optimizing Culture System of Ri T-DNA Transformed Roots for Citrus grandis cv. Changshou Shatian You

    Institute of Scientific and Technical Information of China (English)

    YANG Xiao-hong; SUN Zhong-hai; TONG Rui-jian

    2006-01-01

    Genetic transformation experiments of the different explants from Citrus grandis cv. Changshou Shatian You infected with Agrobacterium rhizogenes were carried out in darkness or in light. The optimizing culture system of Ri T-DNA transformed roots for C. grandis cv. Changshou Shatian You was constructed as follows: After the ventral wounded striations on the single activation cotyledon were inoculated by A. rhizogenes A4 (logarithmic period), they were cocultured at (25 ± 2)℃ in darkness for 25-30 days; some transformed roots were generated from wounded striations of most cotyledons. The genetically transformed ratio is (83 ± 11)%. Axenic Ri T-DNA transformed roots (hairy roots) were harvested after five subcultures. Explants were activated on MT medium. The MS medium was used for subculture of transformed roots. Mass Ri T-DNA transformed roots in which the hormone was produced independently were harvested from this optimizing culture system. White, fresh Ri T-DNA transformed roots were (1.14 ± 0.07) cm long, (0.73 ± 0.04) mm wide, and the growth direction of transformed roots was negative geotropism.

  15. Root production, distribution, and turnover in conventional and organic northern highbush blueberry systems

    Science.gov (United States)

    Northern highbush blueberry is a shallow-rooted crop with very fine, fibrous roots. Recently, we installed minirhizotrons (root observation tubes) in a conventional and an organic blueberry planting in western Oregon. We wanted to know exactly when and where new roots were being produced and determi...

  16. Endodontic management of a mandibular first molar with six root canal systems

    OpenAIRE

    Dilip Jain; Smitha Reddy; Bhuvan Shome Venigalla; Shekhar Kamishetty

    2015-01-01

    Internal anatomy of pulp is complex. The first mandibular molars typically have two roots, one mesial with two root canals and another distal root, which contains one or two canals. A 20-year-old female patient reported with intermittent pain and incomplete root canal treatment in left lower back region since 1-week. Refined access cavity revealed initially two canals in mesial and two canals in the distal root. With operating microscope and cone beam computerized tomography, two additional c...

  17. Computed tomography evaluation of rotary systems on the root canal transportation and centering ability

    Energy Technology Data Exchange (ETDEWEB)

    Pagliosa, Andre; Raucci-Neto, Walter; Silva-Souza, Yara Teresinha Correa; Alfredo, Edson, E-mail: ysousa@unaerp.br [Universidade de Ribeirao Preto (UNAERP), SP (Brazil). Fac. de Odontologia; Sousa-Neto, Manoel Damiao; Versiani, Marco Aurelio [Universidade de Sao Paulo (USP), Ribeirao Preto, SP (Brazil). Fac. de Odoentologia

    2015-03-01

    The endodontic preparation of curved and narrow root canals is challenging, with a tendency for the prepared canal to deviate away from its natural axis. The aim of this study was to evaluate, by cone-beam computed tomography, the transportation and centering ability of curved mesiobuccal canals in maxillary molars after biomechanical preparation with different nickel-titanium (NiTi) rotary systems. Forty teeth with angles of curvature ranging from 20° to 40° and radii between 5.0 mm and 10.0 mm were selected and assigned into four groups (n = 10), according to the biomechanical preparative system used: Hero 642 (HR), Liberator (LB), ProTaper (PT), and Twisted File (TF). The specimens were inserted into an acrylic device and scanned with computed tomography prior to, and following, instrumentation at 3, 6 and 9 mm from the root apex. The canal degree of transportation and centering ability were calculated and analyzed using one-way ANOVA and Tukey’s tests (α = 0.05). The results demonstrated no significant difference (p > 0.05) in shaping ability among the rotary systems. The mean canal transportation was: -0.049 ± 0.083 mm (HR); -0.004 ± 0.044 mm (LB); -0.003 ± 0.064 mm (PT); -0.021 ± 0.064 mm (TF). The mean canal centering ability was: -0.093 ± 0.147 mm (HR); -0.001 ± 0.100 mm (LB); -0.002 ± 0.134 mm (PT); -0.033 ± 0.133 mm (TF). Also, there was no significant difference among the root segments (p > 0.05). It was concluded that the Hero 642, Liberator, ProTaper, and Twisted File rotary systems could be safely used in curved canal instrumentation, resulting in satisfactory preservation of the original canal shape. (author)

  18. Computed tomography evaluation of rotary systems on the root canal transportation and centering ability

    International Nuclear Information System (INIS)

    The endodontic preparation of curved and narrow root canals is challenging, with a tendency for the prepared canal to deviate away from its natural axis. The aim of this study was to evaluate, by cone-beam computed tomography, the transportation and centering ability of curved mesiobuccal canals in maxillary molars after biomechanical preparation with different nickel-titanium (NiTi) rotary systems. Forty teeth with angles of curvature ranging from 20° to 40° and radii between 5.0 mm and 10.0 mm were selected and assigned into four groups (n = 10), according to the biomechanical preparative system used: Hero 642 (HR), Liberator (LB), ProTaper (PT), and Twisted File (TF). The specimens were inserted into an acrylic device and scanned with computed tomography prior to, and following, instrumentation at 3, 6 and 9 mm from the root apex. The canal degree of transportation and centering ability were calculated and analyzed using one-way ANOVA and Tukey’s tests (α = 0.05). The results demonstrated no significant difference (p > 0.05) in shaping ability among the rotary systems. The mean canal transportation was: -0.049 ± 0.083 mm (HR); -0.004 ± 0.044 mm (LB); -0.003 ± 0.064 mm (PT); -0.021 ± 0.064 mm (TF). The mean canal centering ability was: -0.093 ± 0.147 mm (HR); -0.001 ± 0.100 mm (LB); -0.002 ± 0.134 mm (PT); -0.033 ± 0.133 mm (TF). Also, there was no significant difference among the root segments (p > 0.05). It was concluded that the Hero 642, Liberator, ProTaper, and Twisted File rotary systems could be safely used in curved canal instrumentation, resulting in satisfactory preservation of the original canal shape. (author)

  19. Root systems and diagram calculus. II. Quadratic forms for the Carter diagrams

    CERN Document Server

    Stekolshchik, Rafael

    2010-01-01

    We study the class C4 of Carter diagrams containing 4-cycle. For any G from C4, and hence, for the conjugacy class associated with G, we introduce the partial Cartan matrix B_L which is similar to the Cartan matrix B. We consider linkage diagrams obtained from G by adding one root together with its bonds such that the resulting subset of roots is linearly independent. We enumerate linkage diagrams for the Carter diagrams of C4 and D_l, E_6, E_7, E_8 by means of some properties of the partial Cartan matrix. The linkage diagrams connected under the action of dual partial Weyl group constitute one or more components. The obtained graph is called the linkage system which is similar to the weight system arising in the representation theory of the semisimple Lie algebras. For Carter diagrams E_6(a_i) and E_6 the linkage system has two components, each of which contains 27 elements; for Carter diagrams E_7(a_i) and for E_7, the linkage system has a single component containing 56 elements; for Carter diagrams D_l(a_i...

  20. 75 FR 5604 - Privacy Act of 1974; Report of an Altered System of Records

    Science.gov (United States)

    2010-02-03

    ... to alter a system of records for Disability Claims of the Nursing Student Loan Program in the Bureau...). This system includes information on applicants for cancellation of health professions and nursing... this system of records: ``Disability Claims in the Nursing Student Loan Program, HHS/HRSA/BHPr''...

  1. Alteration of Proteasome System in Aging and Aging-Associated Disorders

    Directory of Open Access Journals (Sweden)

    Qunxing Ding

    2015-11-01

    Full Text Available The proteasome system is crucial in protein metabolism involving in physiological and pathological developments, especially in aging and agingrelated disorders. Here we discussed the relationship of proteasome with other metabolic systems such as lysosome and ribosome as well as the alteration of proteasome system under oxidative stress, aging and other pathological conditions

  2. Combined Effects of Lanthanum (III) and Acid Rain on Antioxidant Enzyme System in Soybean Roots.

    Science.gov (United States)

    Zhang, Xuanbo; Du, Yuping; Wang, Lihong; Zhou, Qing; Huang, Xiaohua; Sun, Zhaoguo

    2015-01-01

    Rare earth element pollution (REEs) and acid rain (AR) pollution simultaneously occur in many regions, which resulted in a new environmental issue, the combined pollution of REEs and AR. The effects of the combined pollution on the antioxidant enzyme system of plant roots have not been reported. Here, the combined effects of lanthanum ion (La3+), one type of REE, and AR on the antioxidant enzyme system of soybean roots were investigated. In the combined treatment of La3+ (0.08 mM) and AR, the cell membrane permeability and the peroxidation of cell membrane lipid of soybean roots increased, and the superoxide dismutase, catalase, peroxidase and reduced ascorbic acid served as scavengers of reactive oxygen species. In other combined treatments of La3+ (0.40 mM, 1.20 mM) and AR, the membrane permeability, malonyldialdehyde content, superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content increased, while the catalase activity decreased. The increased superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content were inadequate to scavenge the excess hydrogen peroxide and superoxide, leading to the damage of the cell membrane, which was aggravated with the increase in the concentration of La3+ and the level of AR. The deleterious effects of the combined treatment of La3+ and AR were stronger than those of the single treatment of La3+ or AR. Moreover, the activity of antioxidant enzyme system in the combined treatment group was affected directly and indirectly by mineral element content in soybean plants. PMID:26230263

  3. Combined Effects of Lanthanum (III and Acid Rain on Antioxidant Enzyme System in Soybean Roots.

    Directory of Open Access Journals (Sweden)

    Xuanbo Zhang

    Full Text Available Rare earth element pollution (REEs and acid rain (AR pollution simultaneously occur in many regions, which resulted in a new environmental issue, the combined pollution of REEs and AR. The effects of the combined pollution on the antioxidant enzyme system of plant roots have not been reported. Here, the combined effects of lanthanum ion (La3+, one type of REE, and AR on the antioxidant enzyme system of soybean roots were investigated. In the combined treatment of La3+ (0.08 mM and AR, the cell membrane permeability and the peroxidation of cell membrane lipid of soybean roots increased, and the superoxide dismutase, catalase, peroxidase and reduced ascorbic acid served as scavengers of reactive oxygen species. In other combined treatments of La3+ (0.40 mM, 1.20 mM and AR, the membrane permeability, malonyldialdehyde content, superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content increased, while the catalase activity decreased. The increased superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content were inadequate to scavenge the excess hydrogen peroxide and superoxide, leading to the damage of the cell membrane, which was aggravated with the increase in the concentration of La3+ and the level of AR. The deleterious effects of the combined treatment of La3+ and AR were stronger than those of the single treatment of La3+ or AR. Moreover, the activity of antioxidant enzyme system in the combined treatment group was affected directly and indirectly by mineral element content in soybean plants.

  4. An application of the square root information filter to large scale linear interconnected systems

    Science.gov (United States)

    Bierman, G. J.

    1977-01-01

    It is demonstrated that use of the square root information filter (SRIF) can reduce the storage and computation required for estimation of certain classes of large-scale interconnected systems. The SRIF uses an information array that is related to the Kalman filter covariance and estimate. The SRIF algorithm, which is optimal, is a direct application of matrix partitioning to some optimal filtering algorithms described in the literature. The SRIF algorithm is able to reduce the storage requirements of a 40-subsystem 10-state problem by a full order of magnitude.

  5. GROWTH AND ROOTING SYSTEM OF ACACIA MANGIUM OBTAINED BY TISSUE CULTURE

    OpenAIRE

    SUPRIYANTO; IWAN SETIAWAN, M.I. UMBOH

    1991-01-01

    Since 1980/1981, the government of Indonesia through the Ministry of Forestry has started to reforest logged-over, alang-alang, unproductive areas and to convert them to Forest Industry Plantation. The target is 300 000 ha per year. It means, 750 million seedlings should be provided per year (planting distance 2 m x 2 m). The tree species to be planted in forest industry plantation should have shorter life cycle (8 - 10 years), good stem-form, good rooting system, and should be fast growing. ...

  6. Humoral Immune System Alterations in Silica Exposed Workers

    Directory of Open Access Journals (Sweden)

    O Aminian

    2008-09-01

    Full Text Available "nBackground: Crystalline silica may act as an immune adjuvant to increase inflammation and antibody production. The high­est exposures to silica are known to occur in the dusty trades industries such as stone- cutting. We undertook this popula­tion based study to examine the association between occupational silica exposure and humoral immune system."nMethods: In this historical cohort study, 47 workers from 10 stone-cutting factories in Rey City, south of Tehran, Iran  that had more than 10 years exposure  to silica were included in case group and 45 individual without any exposure to silica were selected for control group. We measured serum immunoglobulins (IgM, IgG, and IgA of participants with ELISA method and compared the results between exposed workers and control groups."nResults: The mean concentrations of two immunoglobulines (IgG, IgA and IgM in case group in comparison with control group were higher and lower respectively but both were in normal range. IgA concentration between two groups was statisti­cally significant (P< 0.05."nConclusion: Crystalline silica exposure may promote the humoral immune system in some individuals. Additional research is recommended in other population, using study design that minimize potential selection bias and maximize the quality of expo­sure assessment.

  7. Advanced nutrient root-feeding system for conveyor-type cylindrical plant growth facilities for microgravity

    Science.gov (United States)

    Berkovich, Yu. A.; Krivobok, N. M.; Krivobok, A. S.; Smolyanina, S. O.

    2016-02-01

    A compact and reliable automatic method for plant nutrition supply is needed to monitor and control space-based plant production systems. The authors of this study have designed a nutrient root-feeding system that minimizes and regulates nutrient and water supply without loss of crop yields in a space greenhouse. The system involves an ion-exchange fibrous artificial soil (AS) BIONA-V3TM as the root-inhabited medium; a pack with slow-release fertilizer as the main source of nitrogen, phosphorus, and potassium; and a cartridge with granular mineral-rich ionite (GMRI) as a source of calcium, magnesium, sulfur, and iron. A controller equipped with an electrical conductivity meter controls the solution flow and concentration of the solution in the mixing tank at specified values. Experiments showed that the fibrous AS-stabilized pH of the substrate solution within the range of 6.0-6.6 is favorable to the majority of crops. The experimental data confirmed that this technique allowed solution preparation for crops in space greenhouses by means of pumping water through the cartridge and minimization of the AS stock onboard the space vehicle.

  8. Advanced nutrient root-feeding system for conveyor-type cylindrical plant growth facilities for microgravity.

    Science.gov (United States)

    Berkovich, Yu A; Krivobok, N M; Krivobok, A S; Smolyanina, S O

    2016-02-01

    A compact and reliable automatic method for plant nutrition supply is needed to monitor and control space-based plant production systems. The authors of this study have designed a nutrient root-feeding system that minimizes and regulates nutrient and water supply without loss of crop yields in a space greenhouse. The system involves an ion-exchange fibrous artificial soil (AS) BIONA-V3(TM) as the root-inhabited medium; a pack with slow-release fertilizer as the main source of nitrogen, phosphorus, and potassium; and a cartridge with granular mineral-rich ionite (GMRI) as a source of calcium, magnesium, sulfur, and iron. A controller equipped with an electrical conductivity meter controls the solution flow and concentration of the solution in the mixing tank at specified values. Experiments showed that the fibrous AS-stabilized pH of the substrate solution within the range of 6.0-6.6 is favorable to the majority of crops. The experimental data confirmed that this technique allowed solution preparation for crops in space greenhouses by means of pumping water through the cartridge and minimization of the AS stock onboard the space vehicle. PMID:26948009

  9. Establishment of Aquilaria malaccensis Callus, cell suspension and adventitious root systems

    International Nuclear Information System (INIS)

    Aquilaria malaccensis is a tropical forest tree from the family Thymelaeaceae, an endangered forest species and was listed in CITES since 1995. Locally known as Pokok Karas, this tree produces agar wood or gaharu, a highly valuable, resinous and fragrant forest product. Karas has been highly recognized for its vast medicinal values and gaharu has been widely use for perfumery, incense and religious purposes. The phyto chemical studies of agar wood showed that Sesqui terpenoid and Phenyl ethy chromone derivatives are the principal compounds that have anti allergic and anti microbe activities. Cell and organ culture systems provide large scale production of biomass and offers feasibilities for the production of secondary metabolites. This paper describes the work done for establishing reproducible systems for callus initiation and production of cell suspension cultures as well as production of adventitious roots that will later be amenable for the production of secondary metabolites of A. malaccensis. Hence, further manipulation with Methyl Jasmonate, a chemical elicitor could be done to induce secondary metabolites using callus, cell suspension and adventitious roots systems. (author)

  10. General Anesthesia and Altered States of Arousal: A Systems Neuroscience Analysis

    OpenAIRE

    Emery N Brown; Purdon, Patrick L.; Van Dort, Christa J.

    2011-01-01

    Placing a patient in a state of general anesthesia is crucial for safely and humanely performing most surgical and many nonsurgical procedures. How anesthetic drugs create the state of general anesthesia is considered a major mystery of modern medicine. Unconsciousness, induced by altered arousal and/or cognition, is perhaps the most fascinating behavioral state of general anesthesia. We perform a systems neuroscience analysis of the altered arousal states induced by five classes of intraveno...

  11. Endodontic management of a mandibular first molar with six root canal systems.

    Science.gov (United States)

    Jain, Dilip; Reddy, Smitha; Venigalla, Bhuvan Shome; Kamishetty, Shekhar

    2015-01-01

    Internal anatomy of pulp is complex. The first mandibular molars typically have two roots, one mesial with two root canals and another distal root, which contains one or two canals. A 20-year-old female patient reported with intermittent pain and incomplete root canal treatment in left lower back region since 1-week. Refined access cavity revealed initially two canals in mesial and two canals in the distal root. With operating microscope and cone beam computerized tomography, two additional canals (L-mesio-buccal and B-mesio-lingual) were identified in mesial root. One-year follow-up showed patient was asymptomatic and complete healing of periapical radiolucency. PMID:26430309

  12. Endodontic management of a mandibular first molar with six root canal systems

    Science.gov (United States)

    Jain, Dilip; Reddy, Smitha; Venigalla, Bhuvan Shome; Kamishetty, Shekhar

    2015-01-01

    Internal anatomy of pulp is complex. The first mandibular molars typically have two roots, one mesial with two root canals and another distal root, which contains one or two canals. A 20-year-old female patient reported with intermittent pain and incomplete root canal treatment in left lower back region since 1-week. Refined access cavity revealed initially two canals in mesial and two canals in the distal root. With operating microscope and cone beam computerized tomography, two additional canals (L-mesio-buccal and B-mesio-lingual) were identified in mesial root. One-year follow-up showed patient was asymptomatic and complete healing of periapical radiolucency. PMID:26430309

  13. Primary melanoma tumor inhibits metastasis through alterations in systemic hemostasis.

    Science.gov (United States)

    Kirstein, Jennifer M; Hague, M Nicole; McGowan, Patricia M; Tuck, Alan B; Chambers, Ann F

    2016-08-01

    Progression from a primary tumor to distant metastases requires extensive interactions between tumor cells and their microenvironment. The primary tumor is not only the source of metastatic cells but also can also modulate host responses to these cells, leading to an enhancement or inhibition of metastasis. Tumor-mediated stimulation of bone marrow can result in pre-metastatic niche formation and increased metastasis. However, a primary tumor can also inhibit metastasis through concomitant tumor resistance-inhibition of metastatic growth by existing tumor mass. Here, we report that the presence of a B16F10 primary tumor significantly restricted numbers and sizes of experimental lung metastases through reduction of circulating platelets and reduced formation of metastatic tumor cell-associated thrombi. Tumor-bearing mice displayed splenomegaly, correlated with primary tumor size and platelet count. Reduction in platelet numbers in tumor-bearing animals was responsible for metastatic inhibition, as restoration of platelet numbers using isolated platelets re-established both tumor cell-associated thrombus formation and experimental metastasis. Consumption of platelets due to a B16F10 primary tumor is a form of concomitant tumor resistance and demonstrates the systemic impact of a growing tumor. Understanding the interplay between primary tumors and metastases is essential, as clarification of concomitant tumor resistance mechanisms may allow inhibition of metastatic growth following tumor resection. Key messages Mice with a primary B16F10 tumor had reduced metastasis vs. mice without a primary tumor. Tumor-bearing mice had splenomegaly and fewer platelets and tumor-associated thrombi. Restoring platelets restored tumor-associated thrombi and increased metastasis. This work shows the impact that a primary tumor can have on systemic metastasis. Understanding these interactions may lead to improved ways to inhibit metastasis. PMID:27048169

  14. The Accuracy of the Digital imaging system and the frequency dependent type apex locator in root canal length measurement

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Byoung Rib; Park, Chang Seo [Dept. of Dental Radiology, College of Dentistry, Yensei University, Seoul (Korea, Republic of)

    1998-08-15

    In order to achieve a successful endodontic treatment, root canals must be obturated three-dimensionally without causing any damage to apical tissues. Accurate length determination of the root canal is critical in this case. For this reason, I've used the conventional periapical radiography, Digora (digital imaging system) and Root ZX (the frequency dependent type apex locator) to measure the length of the canal and compare it with the true length obtained by cutting the tooth in half and measuring the length between the occlusal surface and the apical foramen. From the information obtained by these measurements, I was able to evaluate the accuracy and clinical usefulness of each systems, whether the thickness of files used in endodontic therapy has any effect on the measuring systems was also evaluated in an effort to simplify the treatment planning phase of endodontic treatment. 29 canals of 29 sound premolars were measured with no 15, no 20, no 25 files by 3 different dentists each using the periapical radiography, Digora and Root ZX. The measurements were then compared with the true length. The results were as follows; 1. In comparing mean discrepancies between measurements obtained by using periapical radiography (mean error : -0.449 {+-} 0.444 mm), Digora (mean error : -0.417 {+-} 0.415 mm) and Root ZX (mean error : 0.123 {+-} 0.458 mm) with true length, periapical radiography and Digora system had statistically significant differences (p<0.05) in most cases while root zx showed none (p>0.05). 2. By subtracting values obtained by using periapical radiography, Digora and Root ZX from the true length and making a distribution table of their absolute values, the following analysis was possible. In the case of periapical film, 140 out of 261 (53.6%) were clinically acceptable satisfying the margin of error of less than 0.5 mm, 151 out of 261 (53,6%) were acceptable in the Digora system while Root ZX had 197 out of 261 (75.5%) within the limits of 0.5 mm

  15. New calorimetric system and some results of water phase transition research in plant roots.

    Science.gov (United States)

    Bakradze, N; Kiziria, E; Sokhadze, V; Gogichaishvili, Sh; Vardidze, E

    2007-01-01

    The principle of operation and main parameters of the recently created scanning differential reverse microcalorimeter of the new generation are presented. The microcalorimeter is destined for studying water crystallization and ice melting processes in heterogeneous systems, including plant and animal cells and tissues in the temperature range of 20 to -55 degrees C. In order to obtain maximum information from the experimental results respective algorithms and applied software package were developed. The results of studies of water crystallization and ice melting processes in different parts of common plantain (Plantago major L.) root, as a certain model system, can give us information on the peculiarities of the studied processes in complex, heterogeneous systems. PMID:17522730

  16. Tree growth and management in Ugandan agroforestry systems: effects of root pruning on tree growth and crop yield

    OpenAIRE

    Wajja-Musukwe, Tellie-Nelson; Wilson, Julia; Sprent, Janet I.; Ong, Chin K.; Deans, J. Douglas; Okorio, John

    2008-01-01

    Tree root pruning is a potential tool for managing below-ground competition when trees and crops are grown together in agroforestry systems. This study investigates its effects on growth and root distribution of Alnus acuminata (HB & K), Casuarina equisetifolia (L), Grevillea robusta (A. Cunn. ex R. Br), Maesopsis eminii (Engl.), and Markhamia lutea (Benth.) K. Schum. and on yield of adjacent crops in sub-humid Uganda. The trees were 3 years old at the commencement of the study, and most spec...

  17. Split-root systems applied to the study of the legume-rhizobial symbiosis:What have we learned?

    Institute of Scientific and Technical Information of China (English)

    Estbaliz Larrainzar; Erena Gil-Quintana; Cesar Arrese-Igor; Esther M Gonzlez; Daniel Marino

    2014-01-01

    Split‐root system (SRS) approaches al ow the differential treatment of separate and independent root systems, while sharing a common aerial part. As such, SRS is a useful tool for the discrimination of systemic (shoot origin) versus local (root/nodule origin) regulation mechanisms. This type of approach is particularly useful when studying the complex regulatory mechanisms governing the symbiosis established between legumes and Rhizobium bacteria. The current work provides an overview of the main insights gained from the application of SRS approaches to understand how nodule number (nodulation autoregulation) and nitrogen fixation are control ed both under non‐stressful conditions and in response to a variety of stresses. Nodule number appears to be mainly control ed at the systemic level through a signal which is produced by nodule/root tissue, translocated to the shoot, and transmitted back to the root system, involving shoot Leu‐rich repeat receptor‐like kinases. In contrast, both local and systemic mechanisms have been shown to operate for the regulation of nitrogenase activity in nodules. Under drought and heavy metal stress, the regulation is mostly local, whereas the application of exogenous nitrogen seems to exert a regulation of nitrogen fixation both at the local and systemic levels.

  18. Analysis techniques for multivariate root loci. [a tool in linear control systems

    Science.gov (United States)

    Thompson, P. M.; Stein, G.; Laub, A. J.

    1980-01-01

    Analysis and techniques are developed for the multivariable root locus and the multivariable optimal root locus. The generalized eigenvalue problem is used to compute angles and sensitivities for both types of loci, and an algorithm is presented that determines the asymptotic properties of the optimal root locus.

  19. The Accuracy of the Digital imaging system and the frequency dependent type apex locator in root canal length measurement

    International Nuclear Information System (INIS)

    In order to achieve a successful endodontic treatment, root canals must be obturated three-dimensionally without causing any damage to apical tissues. Accurate length determination of the root canal is critical in this case. For this reason, I've used the conventional periapical radiography, Digora (digital imaging system) and Root ZX (the frequency dependent type apex locator) to measure the length of the canal and compare it with the true length obtained by cutting the tooth in half and measuring the length between the occlusal surface and the apical foramen. From the information obtained by these measurements, I was able to evaluate the accuracy and clinical usefulness of each systems, whether the thickness of files used in endodontic therapy has any effect on the measuring systems was also evaluated in an effort to simplify the treatment planning phase of endodontic treatment. 29 canals of 29 sound premolars were measured with no 15, no 20, no 25 files by 3 different dentists each using the periapical radiography, Digora and Root ZX. The measurements were then compared with the true length. The results were as follows ; 1. In comparing mean discrepancies between measurements obtained by using periapical radiography (mean error : -0.449 ± 0.444 mm), Digora (mean error : -0.417 ± 0.415 mm) and Root ZX (mean error : 0.123 ± 0.458 mm) with true length, periapical radiography and Digora system had statistically significant differences (p0.05). 2. By subtracting values obtained by using periapical radiography, Digora and Root ZX from the true length and making a distribution table of their absolute values, the following analysis was possible. In the case of periapical film, 140 out of 261 (53.6%) were clinically acceptable satisfying the margin of error of less than 0.5 mm, 151 out of 261 (53,6%) were acceptable in the Digora system while Root ZX had 197 out of 261 (75.5%) within the limits of 0.5 mm margin of error. 3. In determining whether the thickness of

  20. Hydrothermal alteration of Hercynian granites, its significance to the evolution of geothermal systems in granitic rocks

    Energy Technology Data Exchange (ETDEWEB)

    Marques, Jose M.; Matias, Maria J.; Basto, Maria J.; Aires-Barros, Luis A. [Instituto Superior Tecnico, Centro de Petrologia e Geoquimica, Universidade Tecnica de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon (Portugal); Carreira, Paula M. [Instituto Tecnologico e Nuclear, Estrada Nacional n 10, 2686 - 953 Sacavem (Portugal); Goff, Fraser E. [Earth and Planetary Sciences Department, Univ. of New Mexico, Albuquerque, NM 87131 (United States)

    2010-06-15

    We discuss geochemical and isotopic ({sup 18}O/{sup 16}O, {sup 2}H/{sup 1}H and {sup 87}Sr/{sup 86}Sr) data recording the hydrothermal alteration of northern Portuguese Hercynian granites by Na-HCO{sub 3}-CO{sub 2}-rich mineral waters. Whole-rock samples from drill cores of Vilarelho da Raia granite have {delta}{sup 18}O values in the +11.47 to +10.10 permille range. The lower values correspond to highly fractured granite samples displaying vein and pervasive alteration. In the pervasive alteration stage, which probably results from a convective hydrothermal system set up by the intrusion of the granites, the metamorphic waters are in equilibrium with hydrous minerals. In contrast, the vein alteration of these granitic rocks was caused by water of meteoric origin. The oxygen ratios between water (W) and rock (R), the so-called W/R ratios, obtained for the open system (where the heated water is lost from the system by escape to the surface) range between 0.05 and 0.11, suggesting that the recrystallization of the veins was influenced by a small flux of meteoric water. Stable isotope analyses performed on the cores show that the vein alteration stage relates to post-emplacement tectonic stresses acting on the granite, probably of late Hercynian age. Our results are consistent with the existence of two separate alteration events (pervasive and vein) caused by hydrothermal waters of different isotopic characteristics. The studies presented in this paper should be viewed as a natural analogue that uses the alteration features observed in a fossil geothermal system at Vilarelho da Raia to assess possible water-rock reactions presently occurring at depth in granitic rocks of the nearby Chaves area. (author)

  1. Cytokinin-Deficient Transgenic Arabidopsis Plants Show Multiple Developmental Alterations Indicating Opposite Functions of Cytokinins in the Regulation of Shoot and Root Meristem Activity

    Czech Academy of Sciences Publication Activity Database

    Werner, T.; Motyka, Václav; Laucou, V.; Smets, R.; Onckelen, H. V.; Schmülling, T.

    2003-01-01

    Roč. 15, č. 11 (2003), s. 2532-2550. ISSN 1040-4651 R&D Projects: GA AV ČR IAA6038002 Institutional research plan: CEZ:AV0Z5038910 Keywords : Transgenic Arabidopsis Plants * Cytokinins * Root Meristem Activity Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 10.679, year: 2003

  2. Bacteria with Phosphate Solubilizing Capacity Alter Mycorrhizal Fungal Growth Both Inside and Outside the Root and in the Presence of Native Microbial Communities

    Science.gov (United States)

    Lara, Lidia Susana; Rodriguez, Alia; Uribe-Vélez, Daniel; Sanders, Ian R.

    2016-01-01

    Arbuscular mycorrhizal fungi (AMF) and phosphate solubilizing Pseudomonas bacteria (PSB) could potentially interact synergistically because PSB solubilize phosphate into a form that AMF can absorb and transport to the plant. However, very little is known about the interactions between these two groups of microorganisms and how they influence the growth of each other. We tested whether different strains of bacteria, that have the capacity to solubilize phosphate, are able to grow along AMF hyphae and differentially influence the growth of AMF both outside the roots of carrot in in vitro conditions and inside the roots of potato in the presence of a microbial community. We found strong effects of AMF on the growth of the different bacterial strains. Different bacterial strains also had very strong effects on the growth of AMF extraradical hyphae outside the roots of carrot and on colonization of potato roots by AMF. The differential effects on colonization occurred in the presence of a microbial community. Our results show that these two important groups of rhizosphere microorganisms indeed interact with each other. Such interactions could potentially lead to synergistic effects between the two groups but this could depend on whether the bacteria truly solubilize phosphate in the rhizosphere in the presence of microbial communities. PMID:27253975

  3. Bacillus simplex—A Little Known PGPB with Anti-Fungal Activity—Alters Pea Legume Root Architecture and Nodule Morphology When Coinoculated with Rhizobium leguminosarum bv. viciae

    Directory of Open Access Journals (Sweden)

    Ann M. Hirsch

    2013-09-01

    Full Text Available Two strains, 30N-5 and 30VD-1, identified as Bacillus simplex and B. subtilis, were isolated from the rhizospheres of two different plants, a Podocarpus and a palm, respectively, growing in the University of California, Los Angeles (UCLA Mildred E. Mathias Botanical Garden. B. subtilis is a well-known plant-growth promoting bacterial species, but B. simplex is not. B. simplex 30N-5 was initially isolated on a nitrogen-free medium, but no evidence for nitrogen fixation was found. Nevertheless, pea plants inoculated with B. simplex showed a change in root architecture due to the emergence of more lateral roots. When Pisum sativum carrying a DR5::GUSA construct, an indicator for auxin response, was inoculated with either B. simplex 30N-5 or its symbiont Rhizobium leguminosarum bv. viciae 128C53, GUS expression in the roots was increased over the uninoculated controls. Moreover, when pea roots were coinoculated with either B. simplex 30N-5 or B. subtilis 30VD-1 and R. leguminosarum bv. viciae 128C53, the nodules were larger, clustered, and developed more highly branched vascular bundles. Besides producing siderophores and solubilizing phosphate, the two Bacillus spp., especially strain 30VD-1, exhibited anti-fungal activity towards Fusarium. Our data show that combining nodulating, nitrogen-fixing rhizobia with growth-promoting bacteria enhances plant development and strongly supports a coinoculation strategy to improve nitrogen fixation, increase biomass, and establish greater resistance to fungal disease.

  4. Root interactions in a maize/soybean intercropping system control soybean soil-borne disease, red crown rot.

    Directory of Open Access Journals (Sweden)

    Xiang Gao

    Full Text Available BACKGROUND: Within-field multiple crop species intercropping is well documented and used for disease control, but the underlying mechanisms are still unclear. As roots are the primary organ for perceiving signals in the soil from neighboring plants, root behavior may play an important role in soil-borne disease control. PRINCIPAL FINDINGS: In two years of field experiments, maize/soybean intercropping suppressed the occurrence of soybean red crown rot, a severe soil-borne disease caused by Cylindrocladium parasiticum (C. parasiticum. The suppressive effects decreased with increasing distance between intercropped plants under both low P and high P supply, suggesting that root interactions play a significant role independent of nutrient status. Further detailed quantitative studies revealed that the diversity and intensity of root interactions altered the expression of important soybean PR genes, as well as, the activity of corresponding enzymes in both P treatments. Furthermore, 5 phenolic acids were detected in root exudates of maize/soybean intercropped plants. Among these phenolic acids, cinnamic acid was released in significantly greater concentrations when intercropped maize with soybean compared to either crop grown in monoculture, and this spike in cinnamic acid was found dramatically constrain C. parasiticum growth in vitro. CONCLUSIONS: To the best of our knowledge, this study is the first report to demonstrate that intercropping with maize can promote resistance in soybean to red crown rot in a root-dependent manner. This supports the point that intercropping may be an efficient ecological strategy to control soil-borne plant disease and should be incorporated in sustainable agricultural management practices.

  5. Phytoremediation of TNT: C. roseus hairy roots as a model system

    Energy Technology Data Exchange (ETDEWEB)

    Lauritzen, J.R.; Hughes, J.B.; Shanks, J.V. [Rice Univ., Houston, TX (United States)

    1996-12-31

    Widespread contamination by 2,4,6-trinitrotoluene (TNT) of Soil exists at former munitions production and handling facilities. Phytoremediation may be an effective alternative to existing methods of TNT remediation: incineration is highly expensive and recalcitrant reduction products are formed in composting. Recently, the intrinsic ability of plants to transform TNT has been demonstrated using hairy root cultures of Catharanthus roseus as a model system. Kinetic studies were performed at concentrations of 30 and 50 mg/L TNT in growth medium. The pseudo-first order rate constants for disappearance ranged from 0.0103 to 0.0161 (L/g-day); TNT disappears completely within seven to ten days of exposure. The fate of the TNT molecule in plants is also currently under study, mass balance studies were performed with 1-{sup 14}C TNT. After a seven day exposure period, 72% of the label was associated with the roots and 30% was associated with the medium. However, HPLC analysis shows that less than 5% (wt%) of the TNT added is recoverable from both the plants and the media in the form of reduction products. 11 refs., 2 figs.

  6. A Palaeoproterozoic multi-stage hydrothermal alteration system at Nalunaq gold deposit, South Greenland

    Science.gov (United States)

    Bell, Robin-Marie; Kolb, Jochen; Waight, Tod Earle; Bagas, Leon; Thomsen, Tonny B.

    2016-07-01

    Nalunaq is an orogenic, high gold grade deposit situated on the Nanortalik Peninsula, South Greenland. Mineralisation is hosted in shear zone-controlled quartz veins, located in fine- and medium-grained amphibolite. The deposit was the site of Greenland's only operating metalliferous mine until its closure in 2014, having produced 10.67 t of gold. This study uses a combination of field investigation, petrography and U/Pb zircon and titanite geochronology to define a multi-stage hydrothermal alteration system at Nalunaq. A clinopyroxene-plagioclase-garnet(-sulphide) alteration zone (CPGZ) developed in the Nanortalik Peninsula, close to regional peak metamorphism and prior to gold-quartz vein formation. The ca. 1783-1762-Ma gold-quartz veins are hosted in reactivated shear zones with a hydrothermal alteration halo of biotite-arsenopyrite-sericite-actinolite-pyrrhotite(-chlorite-plagioclase-löllingite-tourmaline-titanite), which is best developed in areas of exceptionally high gold grades. Aplite dykes dated to ca. 1762 Ma cross-cut the gold-quartz veins, providing a minimum age for mineralisation. A hydrothermal calcite-titanite alteration assemblage is dated to ca. 1766 Ma; however, this alteration is highly isolated, and as a result, its field relationships are poorly constrained. The hydrothermal alteration and mineralisation is cut by several generations of ca. 1745-Ma biotite granodiorite accompanied by brittle deformation. A ca. 1745-Ma lower greenschist facies hydrothermal epidote-calcite-zoisite alteration assemblage with numerous accessory minerals forms halos surrounding the late-stage fractures. The contrasting hydrothermal alteration styles at Nalunaq indicate a complex history of exhumation from amphibolite facies conditions to lower greenschist facies conditions in an orogenic belt which resembles modern Phanerozoic orogens.

  7. Advanced nutrient root feeding system for conveyer-type cylindrical plant growth facilities developed for microgravity

    Science.gov (United States)

    Berkovich, Yuliy A.; Smolyanina, Svetlana O.; Krivobok, Anna; Krivobok, Nikolay

    A new brand of cylindrical conveyer-type space plant growth facilities (PGF) has been created to improve of cosmonauts’ diet in the microgravity conditions. Up to date several ground prototypes of the space PGF have been made and tested: “Phytocycle”, “Vitacycle”, “Phytocycle-LED”, “Phytoconveyer”; now the space PGF “Vitacycle-T” for the Russian segment of the ISS is under developing. In the PGFs the ion-exchange salt-saturated fibrous artificial soil (AS) is used as a root medium. We have proposed the system for enrichment of irrigation water by nutrients to decrease of the AS store required for PGF working during the long space mission. The system includes root modules filled in fibrous ion-exchange AS, the enrichment column with crumble salt-saturation ion-exchange resin and the cassette with slow releasing fertilizer (SRF). Both substrates (ion-exchange resin and SRF) are necessary because of the SRF contains mostly N, P and K but another three essential elements S, Ca, Mg are provided by the ion-exchange resin. In the system water goes throw the enrichment column with ion-exchange resin fertilizing by the nutrients and comes into the mixer cell fertilize equipped with the electrical conductivity sensor. When the signal of the conductivity sensor is coming to the controller it turns on the pump directed the water flow throw the cassette with SRF until the electric conductivity of the solution in the mixer cell will reach the setpoint. The nutrient root feeding system was tested during 88 days when Chinese cabbage grew in PGF “Phytocycle-LED”. The crop has been continuously illuminated by red and blue LEDs in the PPF ratio 7 to 1; an integral PPF level has been (240 ± 10) µmol/(m2×s). There was no renewal of the used fibrous AS during the experiment. The PGF total electric power consumption was of 0,45 kW. The average fresh biomass productivity of the PGF during steady state working mode was equal 135×g/day per m2 of the illuminated

  8. Effects of Lanthanum Chloride on Activity of Redox System in Plasma Membrane of Rice Seedling Roots

    Institute of Scientific and Technical Information of China (English)

    郑海雷; 张春光; 赵中秋; 马建华; 黄仙君

    2002-01-01

    The plasma membrane was isolated and purified by using the method of aqueous two-phase partitioning from rice (Oryza sativa) seedling roots. The effect of LaCl3 on the activity of redox system of plasma membrane has been studied. The reduction rate of Fe(CN)3-6 and the oxidation rate of NADH in plasma membrane are stimulated below the concentration of 40 μmolL-1, but depressed in pace with the increasing of LaCl3 over the concentration of 40 μmol*L-1. The possible effect of LaCl3 on the uptake of Fe element by rice seedling was also discussed.

  9. Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content

    NARCIS (Netherlands)

    Liu, WT; Linning, KD; Nakamura, K; Mino, T; Matsuo, T; Forney, LJ

    2000-01-01

    Biomarkers (respiratory quinones and cellular fatty acids) and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA genes were used to characterize the microbial community structure of lab-scale enhanced biological phosphate-removal (EBPR) systems in response to altering sludge p

  10. Endodontic management of a mandibular first molar with six root canal systems

    Directory of Open Access Journals (Sweden)

    Dilip Jain

    2015-01-01

    Full Text Available Internal anatomy of pulp is complex. The first mandibular molars typically have two roots, one mesial with two root canals and another distal root, which contains one or two canals. A 20-year-old female patient reported with intermittent pain and incomplete root canal treatment in left lower back region since 1-week. Refined access cavity revealed initially two canals in mesial and two canals in the distal root. With operating microscope and cone beam computerized tomography, two additional canals (L-mesio-buccal and B-mesio-lingual were identified in mesial root. One-year follow-up showed patient was asymptomatic and complete healing of periapical radiolucency.

  11. Roots Revisited.

    Science.gov (United States)

    Hughes, Barnabas

    1998-01-01

    Offers historical information about square roots. Presents three different methods--Hero's method, visual method, and remainder method--which can be used to teach the finding of square roots and one method for determining cube roots. (ASK)

  12. Three-dimensional Solute Transport Modeling in Coupled Soil and Plant Root Systems

    OpenAIRE

    Schröder, Natalie

    2014-01-01

    Many environmental and agricultural challenges rely on the proper understanding of water flow and solute transport in soils, for example the carbon cycle, crop growth, irrigation scheduling or fate of pollutants in subsoil. Current modeling approaches typically simulate plant uptake via empirical approaches, which neglect the three-dimensional (3D) root architecture. Yet, nowadays 3D soil-root water and solute models on plant-scale exist, which can be used for assessing the impact of root arc...

  13. Robust root clustering for linear uncertain systems using generalized Lyapunov theory

    Science.gov (United States)

    Yedavalli, R. K.

    1993-01-01

    Consideration is given to the problem of matrix root clustering in subregions of a complex plane for linear state space models with real parameter uncertainty. The nominal matrix root clustering theory of Gutman & Jury (1981) using the generalized Liapunov equation is extended to the perturbed matrix case, and bounds are derived on the perturbation to maintain root clustering inside a given region. The theory makes it possible to obtain an explicit relationship between the parameters of the root clustering region and the uncertainty range of the parameter space.

  14. Evaluation of the fracture resistance of remaining thin-walled roots restored with different post systems

    Directory of Open Access Journals (Sweden)

    Luis Gustavo Nunes Dias Pinho

    2013-10-01

    Full Text Available The purpose of this work was evaluating the fracture strength of bovine roots weakened experimentally, restored with two different techniques: internal reinforcement of root canal walls with composite resin and a cast metal post and core or anatomic post (glass fiber post associated with composite resin. Thirty bovine lower central incisive were selected and transversally sectioned, remaining 14 mm of root in order to approximate to the human maxillary central incisive.  A sequence of standardized wear was used to weak the root until the walls remaining achieved from 0.5 to 0.7 mm of thickness at the cervical edge. Two groups were separated randomly (n=15 in order to test the roots reinforced with composite resin associated with cast metal post and core (CMP, or roots restored with composite resin associated to the glass fiber post (GFP. The test were applied in a Universal Test Machine (EMIC with tangential compressive loading focused on the lingual face of core in an angle of 135° with the long axis of the tooth at a crosshead speed of 0.5 mm/min until failure occurred. The results showed that the fracture strength of remaining roots with weakened walls was influenced by the restorative technique, and the higher values of strength fractures were observed in the group of roots reinforced by composite resin associated with CMP (p<0.001 when compared to the group of roots restored with anatomic post.

  15. Development of A Modular Plant Imaging PET System and Its Use In Evaluating Corn Plant Root Systems

    Science.gov (United States)

    Crowell, Alexander; Cumberbatch, Laurie; Fallin, Brent; Howell, Calvin; Reid, Chantal; Bonito, Greg; Topp, Chris; Weisenberger, Andrew; Lee, Seung Joon; McKisson, Jack; Zorn, Carl; Smith, Mark

    2014-03-01

    A modular high-resolution positron emission tomography (PET) system has been developed at the Thomas Jefferson National Accelerator Facility to study physiological processes that influence the biodistribution of various substances in plants. This system is used to investigate sugar transport under varying environmental conditions using 11C-tagged sugars. The positron-emitting radiotracer 11C is produced in the tandem laboratory at TUNL. Initial evaluation of the PhytoPET system to image differences in the biodistribution of 11C-tagged sugars in corn plants due to fungal-root interactions is underway at Duke and preliminary results are presented. This work was supported in part by USDOE Grant No. DE-FG02-97-ER41033 and DE-SC0005057.

  16. Soybean root growth and crop yield in reponse to liming at the beginning of a no-tillage system

    Directory of Open Access Journals (Sweden)

    Edson Campanhola Bortoluzzi

    2014-02-01

    Full Text Available Analyzing the soil near crop roots may reveal limitations to growth and yield even in a no-tillage system. The purpose of the present study was to relate the chemical and physical properties of soil under a no-tillage system to soybean root growth and plant yield after five years of use of different types of limestone and forms of application. A clayey Oxisol received application of dolomitic and calcitic limestones and their 1:1 combination in two forms: surface application, maintained on the soil surface; and incorporated, applied on the surface and incorporated mechanically. Soil physical properties (resistance to mechanical penetration, soil bulk density and soil aggregation, soil chemical properties (pH, exchangeable cations, H+Al, and cation exchange capacity and plant parameters (root growth system, soybean grain yield, and oat dry matter production were evaluated five years after setting up the experiment. Incorporation of lime neutralized exchangeable Al up to a depth of 20 cm without affecting the soil physical properties. The soybean root system reached depths of 40 cm or more with incorporated limestone, increasing grain yield an average of 31 % in relation to surface application, which limited the effect of lime up to a depth of 5 cm and root growth up to 20 cm. It was concluded that incorporation of limestone at the beginning of a no-tillage system ensures a favorable environment for root growth and soybean yield, while this intervention does not show long-term effects on soil physical properties under no-tillage. This suggests that there is resilience in the physical properties evaluated.

  17. Impact of salt stress on the features and activities of root system for three desert halophyte species in their seedling stage

    Institute of Scientific and Technical Information of China (English)

    YI LiangPeng; MA Jian; LI Yan

    2007-01-01

    Linkage between belowground and aboveground sections of ecological system is mainly depending on root system. But root system is the parts of plant that people less understand. The absorption function of root system is closely related to their morphology and activity. Moreover root system can interact with the environmental stress under the adverse situation, and adjust its system to take adaptation responses in morphology and physiology to strengthen its survival chance. This research is focused on three desert halophyte species of H. ammodendron (C.A.Mey.) Bge., S. physophora Pall., and S.nitraria Pall. under solution culture, to study the differences of their root system morphology and activity in the seedling stage under varying salt concentration conditions. The study results show that: A certain salt concentration can promote development of these three halophytes; but rather high salt concentration will restrain their growth, in particular inhibit the root system development. Under the same salt concentration condition, S. nitraria Pall. grows fast and accumulates the largest amount of biomass. Under relatively low salt concentration, the length of axial root and the total length of root system of these three halophyte species are all increased; and compared to the checking samples, S.physophora Pall. occupies the top place of root system growth, but the high salt concentration will restrain the increase of total root length; among them, the impact intensity on S. physophora Pall. is lighter than to H. ammodendron (C.A.Mey.) Bge. and S. nitraria Pall. is lighter; the salinity does not bring distinct influence on the average diameter of root system of these three plant species, but trends to reducing the size; under the solution culture conditions, the middle and lower parts of the axial root of H. ammodendron (C.A.Mey.) Bge. and S. physophora Pall. are rather equally distributed, but the central zone of S. nitraria Pall. root system is more significantly

  18. A Palaeoproterozoic multi-stage hydrothermal alteration system at Nalunaq gold deposit, South Greenland

    DEFF Research Database (Denmark)

    Bell, Robin-Marie; Kolb, Jochen; Waight, Tod Earle;

    2016-01-01

    Nalunaq is an orogenic, high gold grade deposit situated on the Nanortalik Peninsula, South Greenland. Mineralisation is hosted in shear zone-controlled quartz veins, located in fine- and medium-grained amphibolite. The deposit was the site of Greenland’s only operating metalliferous mine until its...... closure in 2014, having produced 10.67 t of gold. This study uses a combination of field investigation, petrography and U/Pb zircon and titanite geochronology to define a multistage hydrothermal alteration system at Nalunaq. A clinopyroxene-plagioclase-garnet(-sulphide) alteration zone (CPGZ) developed in...... the Nanortalik Peninsula, close to regional peak metamorphism and prior to gold-quartz vein formation. The ca. 1783–1762-Ma gold-quartz veins are hosted in reactivated shear zones with a hydrothermal alteration halo of biotite...

  19. Ambient ultraviolet radiation in the Arctic reduces root biomass and alters microbial community composition but has no effects on microbial biomass

    DEFF Research Database (Denmark)

    Rinnan, R.; Keinänen, M.M.; Kasurinen, A.;

    2005-01-01

    biomass and altered microbial community composition. These hypotheses were tested on cored soil samples from a UV reduction experiment with three filter treatments (Mylar, 60% UV-B reduction; Lexan, up to 90% UV-B reduction+UV-A reduction; UV transparent Teflon, filter control) and an open control...

  20. Enhancement of anti-inflammatory activity of Aloe vera adventitious root extracts through the alteration of primary and secondary metabolites via salicylic acid elicitation.

    Directory of Open Access Journals (Sweden)

    Yun Sun Lee

    Full Text Available Aloe vera (Asphodeloideae is a medicinal plant in which useful secondary metabolites are plentiful. Among the representative secondary metabolites of Aloe vera are the anthraquinones including aloe emodin and chrysophanol, which are tricyclic aromatic quinones synthesized via a plant-specific type III polyketide biosynthesis pathway. However, it is not yet clear which cellular responses can induce the pathway, leading to production of tricyclic aromatic quinones. In this study, we examined the effect of endogenous elicitors on the type III polyketide biosynthesis pathway and identified the metabolic changes induced in elicitor-treated Aloe vera adventitious roots. Salicylic acid, methyl jasmonate, and ethephon were used to treat Aloe vera adventitious roots cultured on MS liquid media with 0.3 mg/L IBA for 35 days. Aloe emodin and chrysophanol were remarkably increased by the SA treatment, more than 10-11 and 5-13 fold as compared with untreated control, respectively. Ultra-performance liquid chromatography-electrospray ionization mass spectrometry analysis identified a total of 37 SA-induced compounds, including aloe emodin and chrysophanol, and 3 of the compounds were tentatively identified as tricyclic aromatic quinones. Transcript accumulation analysis of polyketide synthase genes and gas chromatography mass spectrometry showed that these secondary metabolic changes resulted from increased expression of octaketide synthase genes and decreases in malonyl-CoA, which is the precursor for the tricyclic aromatic quinone biosynthesis pathway. In addition, anti-inflammatory activity was enhanced in extracts of SA-treated adventitious roots. Our results suggest that SA has an important role in activation of the plant specific-type III polyketide biosynthetic pathway, and therefore that the efficacy of Aloe vera as medicinal agent can be improved through SA treatment.

  1. Infection cushion formation by Rhizoctonia spp. on peanut and wheat root systems

    Science.gov (United States)

    The formation of infection cushions by Rhizoctonia solani (isolate G-24) and R. cerealis (isolate Fellers) was examined on cellophane membranes in response to stimulation by roots of peanut (Okrun, Tamspan 90, Southwest runner and Line 209) and hard red winter wheat (Jagger, 2137, and 2174). Root s...

  2. Genetic association among root morphology, root quality and root yield in ashwagandha (Withania somnifera

    Directory of Open Access Journals (Sweden)

    Kumar Ramesh R.

    2011-01-01

    Full Text Available Ashwagandha (Withania somnifera is a dryland medicinal crop and roots are used as valuable drug in traditional systems of medicine. Morphological variants (morphotypes and the parental populations were evaluated for root - morphometric, quality and yield traits to study genetic association among them. Root morphometric traits (root length, root diameter, number of secondary roots/ plant and crude fiber content exhibited strong association among them and showed significant positive genotypic correlation with yield. Starch-fiber ratio (SFR, determinant of brittle root texture showed strong negative association with root yield. The total alkaloid content had positive genotypic correlation with root yield. So genetic upgradation should aim at optimum balance between two divergent groups of traits i.e. root yield traits (root morphometric traits and crude fiber content and root textural quality traits (starch content and SFR to develop superior genotypes with better yield and quality.

  3. Experimental alteration of molybdenite: evaluation of the Re-Os system, infrared spectroscopic profile and polytype

    Science.gov (United States)

    Suzuki, Katsuhiko; Kagi, Hiroyuki; Nara, Masayuki; Takano, Bokuichiro; Nozaki, Yoshiyuki

    2000-01-01

    Experiments have been carried out to clarify the effect of alteration on Re-Os system, near infrared (NIR)-infrared (IR) spectroscopic characteristics and polytype of a natural molybdenite mineral (MoS 2). The molybdenite sample was placed in H 2O and various media of 0.1 mol/L NaCl, NaHCO 3, CaCl 2, and AlCl 3 solutions, and heated in a sealed quartz tube at a temperature of 180°C for 20 d. The unaltered and altered samples were subsequently used for analysis of Re and Os, NIR microscopic observation, and NIR-IR spectroscopy, and microfocus X-ray diffraction (XRD). Molybdenites subjected to NaCl and NaHCO 3 solutions give younger Re-Os ages than that of the original unaltered molybdenite. No significant changes in d spacing and width of micro-XRD patterns can be found in these altered molybdenite, indicating the possibility of Re-Os fractionation without significant structural conversion of molybdenite mineral. These results strongly suggest that the Re-Os system in molybdenite would be frequently disturbed if it has experienced alteration, because alteration by the low salinity (<1%), low temperature (˜180°C) hydrothermal solution containing NaCl and/or CO 2 is commonly found in the natural environment. We maintain, therefore, that one set of analyses of Re and Os in a sample is not enough to determine whether the obtained Re-Os age has been affected by postdepositional alteration, but systematic replicate analyses are indispensable. Additionally, pulverizing all the collected molybdenite in a sample might give misleading results because portions, which have been altered and experienced Re-Os fractionation, may possibly mix into the undisturbed sample and be homogenized. The molybdenite used for the experiment was originally opaque under NIR light. Infrared microscopic and spectroscopic profiles show that some parts of the molybdenite subjected to CaCl 2 and AlCl 3 solutions become transparent to NIR. Increased NIR transmittance is possibly attributed to the

  4. Social Roots of Global Environmental Change: A World-Systems Analysis of Carbon Dioxide Emissions

    Directory of Open Access Journals (Sweden)

    J. Timmons Roberts

    2015-08-01

    Full Text Available Carbon dioxide is understood to be the most important greenhouse gas believed to be altering the global climate. This article applies world-system theory to environmental damage. An analysis of 154 countries examines the contribution of both position in the world economy and internal class and political forces in determining a nation's CO, intensity. CO, intensity is defined here as the amount of carbon dioxide released per unit of economic output. An inverted U distribution of CO, intensity across the range of countries in the global stratification system is identified and discussed. Ordinary Least Squares regression suggests that the least efficient consumers of fossil fuels are some countries within the semi-periphery and upper periphery, spe-cifically those nations which are high exporters, those highly in debt, nations with higher military spending, and those with a repressive social structure.

  5. Production of aventitious root of eurycoma longifolia jack using air-lift bioreactor system

    International Nuclear Information System (INIS)

    In Malaysia the Eurycoma longifolia is better known as a Tongkat Ali, where it has great local demand as a health tonic. Observation after 3 months revealed that modified MS medium (1/2 Nitrate) supplemented with IBA at 5.0 mg/L and 6.0 mg/L (5% sucrose) was found to be the best formulation for adventitious root induction. The data obtained showed that 70% (10 + 2 adventitious root per explants) of the explants cultured formed the adventitious root in both treatments. Other treatments tested within the range (1.0- 10.0 mg/L) produced less than four adventitious roots per explant. Meanwhile, in the treatment using IAA, the highest formation of root was recorded in 7.0 mg/L with the number of root produced was 3 + 1 per explant. Apart from that, observation after 2 months revealed that 4 + 1 adventitious root per explant was observed in the treatment using 4 mg/L NAA. The chemical profiling studies was carried out by focusing on the production of 9-methoxycanthine-6-one in callus derived from different explants, namely leaf, petiole, rachis and root. The Rf value spots of 9-methoxycanthine-6-one (obtained from the TLC) analysis showed a yellowish green in colour when observed under UV light at 366 nm. Based on the intensity and size of the spots on the chromatogram, it was detected that concentration of 9-methoxycanthine-6-one in root-derived callus was generally higher as compared to other calluses. Therefore, adventitious root culture can be an attractive as it is highly differentiated and can cause stable and extensive production of secondary metabolites. (Author)

  6. Accounting for sap flow from different parts of the root system improves the prediction of xylem ABA concentration in plants grown with heterogeneous soil moisture

    OpenAIRE

    Dodd, Ian C; Egea, Gregorio; Davies, William J.

    2008-01-01

    When soil moisture is heterogeneous, sap flow from, and ABA status of, different parts of the root system impact on leaf xylem ABA concentration ([X-ABA]leaf). The robustness of a model for predicting [X-ABA]leaf was assessed. ‘Two root-one shoot’ grafted sunflower (Helianthus annuus L.) plants received either deficit irrigation (DI, each root system received the same irrigation volumes) or partial rootzone drying (PRD, only one root system was watered and the other dried the soil). Irrespect...

  7. Conformity of the time and root characteristics received at modeling of linear systems in the environment of MATLAB

    Directory of Open Access Journals (Sweden)

    Vitaliy Borodenko

    2009-10-01

    Full Text Available The author analyses conformity of the time and root characteristics received at modeling of linear systems in the environment of MATLAB, to each other and to the standard approach. The author studies conditions of reception of false or inexact results at the analysis of regulation quality on the transition characteristic.

  8. LSODKR, Stiff Ordinary Differential Equations (ODE) System Solver with Krylov Iteration with Root-finding

    International Nuclear Information System (INIS)

    1 - Description of program or function: LSODKR is a new initial value ODE solver for stiff and non-stiff systems. It is a variant of the LSODPK and LSODE solvers, intended mainly for large stiff systems. The main differences between LSODKR and LSODE are the following: a) for stiff systems, LSODKR uses a corrector iteration composed of Newton iteration and one of four preconditioned Krylov subspace iteration methods. The user must supply routines for the preconditioning operations, b) within the corrector iteration, LSODKR does automatic switching between functional (fix point) iteration and modified Newton iteration, The nonlinear iteration method-switching differs from the method-switching in LSODA and LSODAR, but provides similar savings by using the cheaper method in the non-stiff regions of the problem. c) LSODKR includes the ability to find roots of given functions of the solution during the integration. d) LSODKR also improves on the Krylov methods in LSODPK by offering the option to save and reuse the approximate Jacobian data underlying the pre-conditioner. The LSODKR source is commented extensively to facilitate modification. Both a single-precision version and a double-precision version are available. 2 - Methods: It is assumed that the ODEs are given explicitly, so that the system can be written in the form dy/dt = f(t,y), where y is the vector of dependent variables, and t is the independent variable. Integration is by Adams or BDF (Backward Differentiation Formula) methods, at user option. Corrector iteration is by Newton or fix point iteration, determined dynamically. Linear system solution is by a preconditioned Krylov iteration, selected by user from Incomplete Orthogonalization Method, Generalized Minimum Residual Method, and two variants of Preconditioned Conjugate Gradient Method. Preconditioning is to be supplied by the user

  9. Root development under drought stress

    OpenAIRE

    Franco Leemhuis, José Antonio

    2011-01-01

    Serving as interfaces between plant and the soil, roots are much more exposed to drought stress than the upper plant parts. Therefore, the root system can be as affected, or even more affected, than the aerial parts of the plant for drought stress (Franco et al., 2011). Nevertheless, the influence of this stress on root activity and development has been much less studied. Undoubtedly, this is due to limitations on accessibility for root observations; being studies on root system dynamics espe...

  10. How changing root system architecture can help tackle a reduction in soil phosphate (P) levels for better plant P acquisition

    KAUST Repository

    HEPPELL, J.

    2014-06-24

    © 2014 John Wiley & Sons Ltd. The readily available global rock phosphate (P) reserves may run out within the next 50-130 years, causing soils to have a reduced P concentration which will affect plant P uptake. Using a combination of mathematical modelling and experimental data, we investigated potential plant-based options for optimizing crop P uptake in reduced soil P environments. By varying the P concentration within a well-mixed agricultural soil, for high and low P (35.5-12.5mgL-1 respectively using Olsen\\'s P index), we investigated branching distributions within a wheat root system that maximize P uptake. Changing the root branching distribution from linear (evenly spaced branches) to strongly exponential (a greater number of branches at the top of the soil) improves P uptake by 142% for low-P soils when root mass is kept constant between simulations. This causes the roots to emerge earlier and mimics topsoil foraging. Manipulating root branching patterns, to maximize P uptake, is not enough on its own to overcome the drop in soil P from high to low P. Further mechanisms have to be considered to fully understand the impact of P reduction on plant development.

  11. Reversal of neurochemical alterations in the spinal dorsal horn and dorsal root ganglia by Mas-related gene (Mrg) receptors in a rat model of spinal nerve injury.

    Science.gov (United States)

    Wang, Dongmei; Xue, Yaping; Yan, Yanhua; Lin, Minjie; Yang, Jiajia; Huang, Jianzhong; Hong, Yanguo

    2016-07-01

    The rodent Mas-related gene (Mrg) receptor subtype C has been demonstrated to inhibit pathological pain. This study investigated the mechanisms underlying the reversal of pain hypersensitivity by the selective MrgC receptor agonist bovine adrenal medulla 8-22 (BAM8-22) in a rat model of L5 spinal nerve ligation (SNL). Intrathecal (i.t.) administration of BAM8-22 (0.1-10nmol) attenuated mechanical allodynia in a dose-dependent manner on day 10 after SNL. The antiallodynia effect of BAM8-22 was abolished by MrgC receptor antibody, but not by naloxone. I.t. BAM8-22 (10nmol) inhibited SNL-induced upregulation of neuronal nitric oxide synthesis (nNOS) and phosphorylation of cyclic AMP response element-binding protein (p-CREB) in the spinal dorsal horn. The BAM8-22 treatment reversed the SNL-induced astrocyte activation, increase of interleukin-1β (IL-1β) expression and phosphorylation of extracellular signal-regulated kinase (p-ERK) in the spinal cord. BAM8-22 also reversed the upregulation of fractalkine and IL-1β in small- and medium-sized dorsal root ganglion (DRG) neurons. Furthermore, the BAM8-22 exposure suppressed the lipopolysaccharide (LPS)-induced increase of nNOS and IL-1β in the DRG explant cultures and the BAM8-22-induced suppression disappeared in the presence of MrgC receptor antibody. The present study provides evidence that activation of MrgC receptors inhibits nerve injury-induced increase of pronociceptive molecules in DRG neurons, suppressing astrocyte activation, the upregulation of excitatory mediators and phosphorylation of transcription factors in the spinal dorsal horn. As MrgC receptors are unequally expressed in the dorsal root and trigeminal ganglia, this study suggests that targeting MrgC receptors could be a new therapy for neuropathic pain with limited unwanted effects. PMID:27018398

  12. Hydrothermal alteration geochemistry of Nugget gold vein system, Shotover valley, northwest Otago, New Zealand

    International Nuclear Information System (INIS)

    Ankeritic alteration zones are associated with gold mineralisation in the Nugget vein system, Shotover valley, northwest Otago. These zones consist of sheared and brecciated schist in Miocene normal faults. The zones are also extensively silicified. Mineralisation resulted from passage of low-salinity, low-CO2 water at 200-250 degrees C within a few kilometres of the surface. Alteration has involved replacement and veining of host pelitic schist in the mineralised zone. Most elements have been diluted by quartz and carbonate, with insignificant gains or losses. Ba has been leached as it became more soluble with decreasing fluid temperature. Considerable addition of Sr has occurred, as the fluid had higher Sr/Ca than most Otago mineralising fluids. Enrichment in Sr may be a distinctive feature of the Shotover style of mineralisation. Metallic mineralisation is due to addition of S, As, and Au during alteration. In contrast to many Otago gold vein systems, there has been no scheelite mineralisation. Carbonates have δ18O = +15.4 to +18.6, and δ13C = -8.2 to +0.5 per thousand. The oxygen isotopic signature is similar to other Otago gold veins. Carbon isotopes in aqueous CO2 which deposited Nugget ankerites are generally heavier (by 2-4 per thousand) than those in other Otago gold vein systems. This is caused by changes in dissolved carbonate species at the lower temperature, and fluid/rock interaction during ankerite mineralisation. (author). 29 refs., 10 figs., 2 tabs

  13. Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays)

    OpenAIRE

    Chimungu, Joseph G.; Loades, Kenneth W.; Lynch, Jonathan P.

    2015-01-01

    The ability of roots to penetrate hard soil is important for crop productivity but specific root phenes contributing to this ability are poorly understood. Root penetrability and biomechanical properties are likely to vary in the root system dependent on anatomical structure. No information is available to date on the influence of root anatomical phenes on root penetrability and biomechanics. Root penetration ability was evaluated using a wax layer system. Root tensile and bending strength we...

  14. Quantitative measurements of root water uptake and root hydraulic conductivities

    Science.gov (United States)

    Zarebanadkouki, Mohsen; Javaux, Mathieu; Meunier, Felicien; Couvreur, Valentin; Carminati, Andrea

    2016-04-01

    How is root water uptake distributed along the root system and what root properties control this distribution? Here we present a method to: 1) measure root water uptake and 2) inversely estimate the root hydraulic conductivities. The experimental method consists in using neutron radiography to trace deuterated water (D2O) in soil and roots. The method was applied to lupines grown aluminium containers filled with a sandy soil. When the lupines were 4 weeks old, D2O was locally injected in a selected soil regions and its transport was monitored in soil and roots using time-series neutron radiography. By image processing, we quantified the concentration of D2O in soil and roots. We simulated the transport of D2O into roots using a diffusion-convection numerical model. The diffusivity of the roots tissue was inversely estimated by simulating the transport of D2O into the roots during night. The convective fluxes (i.e. root water uptake) were inversely estimating by fitting the experiments during day, when plants were transpiring, and assuming that root diffusivity did not change. The results showed that root water uptake was not uniform along the roots. Water uptake was higher at the proximal parts of the lateral roots and it decreased by a factor of 10 towards the distal parts. We used the data of water fluxes to inversely estimate the profile of hydraulic conductivities along the roots of transpiring plants growing in soil. The water fluxes in the lupine roots were simulated using the Hydraulic Tree Model by Doussan et al. (1998). The fitting parameters to be adjusted were the radial and axial hydraulic conductivities of the roots. The results showed that by using the root architectural model of Doussan et al. (1998) and detailed information of water fluxes into different root segments we could estimate the profile of hydraulic conductivities along the roots. We also found that: 1) in a tap-rooted plant like lupine water is mostly taken up by lateral roots; (2) water

  15. Aircraft ride quality controller design using new robust root clustering theory for linear uncertain systems

    Science.gov (United States)

    Yedavalli, R. K.

    1992-01-01

    The aspect of controller design for improving the ride quality of aircraft in terms of damping ratio and natural frequency specifications on the short period dynamics is addressed. The controller is designed to be robust with respect to uncertainties in the real parameters of the control design model such as uncertainties in the dimensional stability derivatives, imperfections in actuator/sensor locations and possibly variations in flight conditions, etc. The design is based on a new robust root clustering theory developed by the author by extending the nominal root clustering theory of Gutman and Jury to perturbed matrices. The proposed methodology allows to get an explicit relationship between the parameters of the root clustering region and the uncertainty radius of the parameter space. The current literature available for robust stability becomes a special case of this unified theory. The bounds derived on the parameter perturbation for robust root clustering are then used in selecting the robust controller.

  16. Induced systemic resistance against Botrytis cinerea by Micromonospora strains isolated from root nodules

    Directory of Open Access Journals (Sweden)

    Pilar eMartínez-Hidalgo

    2015-09-01

    Full Text Available Micromonospora is a Gram positive bacterium that can be isolated from nitrogen fixing nodules from healthy leguminous plants, where they could be beneficial to the plant. Their plant growth promoting activity in legume and non-legume plants has been previously demonstrated. The present study explores the ability of Micromonospora strains to control fungal pathogens and to stimulate plant immunity. Micromonospora strains isolated from surface sterilized nodules of alfalfa showed in vitro antifungal activity against several pathogenic fungi. Moreover, root inoculation of tomato plants with these Micromonospora strains effectively reduced leaf infection by the fungal pathogen Botrytis cinerea, despite spatial separation between both microorganisms. This induced systemic resistance, confirmed in different tomato cultivars, is long lasting. Gene expression analyses evidenced that Micromonospora stimulates the plant capacity to activate defense mechanisms upon pathogen attack. The defensive response of tomato plants inoculated with Micromonospora spp. differs from that of non-inoculated plants, showing a stronger induction of jasmonate-regulated defenses when the plant is challenged with a pathogen. The hypothesis of jasmonates playing a key role in this defense priming effect was confirmed using defense-impaired tomato mutants, since the JA-deficient line def1 was unable to display a long term induced resistance upon Micromonospora spp. inoculation.In conclusion, nodule isolated Micromonospora strains should be considered excellent candidates as biocontrol agents as they combine both direct antifungal activity against plant pathogens and the ability to prime plant immunity.

  17. Induced systemic resistance against Botrytis cinerea by Micromonospora strains isolated from root nodules.

    Science.gov (United States)

    Martínez-Hidalgo, Pilar; García, Juan M; Pozo, María J

    2015-01-01

    Micromonospora is a Gram positive bacterium that can be isolated from nitrogen fixing nodules from healthy leguminous plants, where they could be beneficial to the plant. Their plant growth promoting activity in legume and non-legume plants has been previously demonstrated. The present study explores the ability of Micromonospora strains to control fungal pathogens and to stimulate plant immunity. Micromonospora strains isolated from surface sterilized nodules of alfalfa showed in vitro antifungal activity against several pathogenic fungi. Moreover, root inoculation of tomato plants with these Micromonospora strains effectively reduced leaf infection by the fungal pathogen Botrytis cinerea, despite spatial separation between both microorganisms. This induced systemic resistance, confirmed in different tomato cultivars, is long lasting. Gene expression analyses evidenced that Micromonospora stimulates the plant capacity to activate defense mechanisms upon pathogen attack. The defensive response of tomato plants inoculated with Micromonospora spp. differs from that of non-inoculated plants, showing a stronger induction of jasmonate-regulated defenses when the plant is challenged with a pathogen. The hypothesis of jasmonates playing a key role in this defense priming effect was confirmed using defense-impaired tomato mutants, since the JA-deficient line def1 was unable to display a long term induced resistance upon Micromonospora spp. inoculation. In conclusion, nodule isolated Micromonospora strains should be considered excellent candidates as biocontrol agents as they combine both direct antifungal activity against plant pathogens and the ability to prime plant immunity. PMID:26388861

  18. Nitrogen economics of root foraging: Transitive closure of the nitrate–cytokinin relay and distinct systemic signaling for N supply vs. demand

    Science.gov (United States)

    Ruffel, Sandrine; Krouk, Gabriel; Ristova, Daniela; Shasha, Dennis; Birnbaum, Kenneth D.; Coruzzi, Gloria M.

    2011-01-01

    As sessile organisms, root plasticity enables plants to forage for and acquire nutrients in a fluctuating underground environment. Here, we use genetic and genomic approaches in a “split-root” framework—in which physically isolated root systems of the same plant are challenged with different nitrogen (N) environments—to investigate how systemic signaling affects genome-wide reprogramming and root development. The integration of transcriptome and root phenotypes enables us to identify distinct mechanisms underlying “N economy” (i.e., N supply and demand) of plants as a system. Under nitrate-limited conditions, plant roots adopt an “active-foraging strategy”, characterized by lateral root outgrowth and a shared pattern of transcriptome reprogramming, in response to either local or distal nitrate deprivation. By contrast, in nitrate-replete conditions, plant roots adopt a “dormant strategy”, characterized by a repression of lateral root outgrowth and a shared pattern of transcriptome reprogramming, in response to either local or distal nitrate supply. Sentinel genes responding to systemic N signaling identified by genome-wide comparisons of heterogeneous vs. homogeneous split-root N treatments were used to probe systemic N responses in Arabidopsis mutants impaired in nitrate reduction and hormone synthesis and also in decapitated plants. This combined analysis identified genetically distinct systemic signaling underlying plant N economy: (i) N supply, corresponding to a long-distance systemic signaling triggered by nitrate sensing; and (ii) N demand, experimental support for the transitive closure of a previously inferred nitrate–cytokinin shoot–root relay system that reports the nitrate demand of the whole plant, promoting a compensatory root growth in nitrate-rich patches of heterogeneous soil. PMID:22025711

  19. Soil chemical properties, organic reserves and root system of a degraded pasture associated introduction of legume

    OpenAIRE

    Carlos Eduardo Santos Fabrice; Cecílio Viega Soares Filho; Marcos Franke Pinto; Silvia Helena Venturoli Perri; Ulysses Cecato; Gustavo Pavan Mateus

    2014-01-01

    The aim was to study the recovery of degraded pasture with the introduction of Stylosanthes macrocephala e capitata cv. Campo Grande on Brachiaria decumbens cv. Basilisk evaluating the levels N-total in roots, biomass, area, and length, diameter and root levels of macro and micronutrients in the soil. The experiment was conducted in the municipality of Andradina, São Paulo State, Brazil. The experimental design was a randomized block design in a split-plot (with and without phosphorus), with ...

  20. The Effect of Three Irrigants on the Coronal Leakage of the Root Canals System Irrigants

    OpenAIRE

    Zare Jahromi, Maryam; Barekatain, Mehrdad; Ebrahimi, Maziar; Askari, Bahare

    2010-01-01

    INTRODUCTION The production of smear layer during canal instrumentation is thought to increase coronal microleakage even after canal obturation. Previous studies have shown that the type of irrigant does not necessarily affect the seal of the obturation. Our study aimed to evaluate the effect of three irrigation solutions (MTAD, citric acid and EDTA/NaOCl) on the coronal microleakage of root canals. MATERIALS AND METHODS Fifty five intact single rooted teeth were instrumented and randomly div...

  1. Root-microbe systems: the effect and mode of interaction of Stress Protecting Agent (SPA Stenotrophomonas rhizophila DSM14405T

    Directory of Open Access Journals (Sweden)

    Peyman eAlavi

    2013-05-01

    Full Text Available Stenotrophomonas rhizophila has great potential for applications in biotechnology and biological control due to its ability to both promote plant growth and protect roots against biotic and a-biotic stresses, yet little is known about the mode of interactions in the root-environment system. We studied mechanisms associated with osmotic stress using transcriptomic and microscopic approaches. In response to salt and root extracts, the transcriptome of S. rhizophila DSM14405T changed drastically. We found a notably similar response for several functional gene groups responsible for general stress protection, energy production, and cell motility. However, unique changes in the transcriptome were also observed: the negative regulation of flagella-coding genes together with the up-regulation of the genes responsible for biofilm formation and alginate biosynthesis were identified as a single mechanism of S. rhizophila DSM14405T against salt shock. However, production and excretion of glucosylglycerol (GG were found as a remarkable mechanism for the stress protection of this Stenotrophomonas strain. For S. rhizophila treated with root exudates, the shift from the planktonic lifestyle to a sessile one was measured as expressed in the down-regulation of flagellar-driven motility. These findings fit well with the observed positive regulation of host colonization genes and microscopic images that show different colonization patterns of oilseed rape roots. Spermidine, described as a plant growth regulator, was also newly identified as a protector against stress. Overall, we identified mechanisms of Stenotrophomonas to protect roots against osmotic stress in the environment. In addition to both the changes in life style and energy metabolism, phytohormons and osmoprotectants were also found to play a key role in stress protection.

  2. Alterations of the Danger Zone after Preparation of Curved Root Canals Using WaveOne with Reverse Rotation or Reciprocation Movements

    Science.gov (United States)

    Shantiaee, Yazdan; Dianat, Omid; Paymanpour, Payam; Nahvi, Golnaz; Ketabi, Mohammad Ali; Kolahi Ahari, Golbarg

    2015-01-01

    Introduction: The aim of this study was to compare the changes that occur in the danger zone (DZ) after preparation of curved mesiobuccal (MB) canals of mandibular first molars with WaveOne instruments in two different movements [reciprocation (RCP) and counter-clockwise rotation (CCWR)] by means of cone-beam computed tomography (CBCT). Methods and Materials: MB canals of 30 mandibular molars were randomly divided into 2 groups (n=15); WaveOne/RCP and WaveOne/CCWR. Pre- and post-instrumentation CBCT images were assessed for changes in the dentin thickness in DZ (2 and 4 mm below the highest point of the root furcation) in both groups. Data was analyzed using the repeated measures ANOVA test. Results: There was no statistically significant difference between two experimental groups in terms of remaining dentin thickness at 2 and 4 mm levels below the highest point of the furcation (P>0.05). Conclusion: The efficacy of WaveOne instrument on changes of the dentin thickness in the DZ was not affected by different file movements. PMID:26213536

  3. Alterations in Co2 fixation enzymes, Phosphatase Activity and Endogenous Phytohormones in P-deficient Callus induced from phloem of carrot (Daccus Carota) Roots

    International Nuclear Information System (INIS)

    A carrot callus liquid medium culture experiment was conducted to investigate the effects of P-deficiency on cellular responses separate from the whole plant response. Carrot (Daccus carota L.) callus was induced from the secondary phloem of the tap root. When explants were supplied with one-tenth the amount of Pi supplied to control explants (40 ppm), the concentration of P in callus was reduced by about 68% in a period of three weeks. This reduction in callus P was correlated with 48% reduction in callus fresh and dry weights. This effect was mediated through a reduction in cell number/callus by 48%. Meanwhile, the cell number/mg f.wt. of callus tissue was not affected in P-deficient treatment comparing to P-sufficient one, which might refer to a direct role of P-deficiency on the reduction of cell division. Although total N and soluble protein concentrations were not affected in P-deficient callus, chlorophyll concentration was reduced. In addition higher activity of acid phosphatase was obtained in P-deficient tissue reaching about 41% over its activity in P-sufficient callus which in turn could increase recycling process of P to spare available P for the newly formed cells. This was supported by the higher value of P utilization efficiency (d.wt. produced per unit P taken up) obtained from P-deficient callus

  4. Biological soil crust as a bio-mediator alters hydrological processes in stabilized dune system of the Tengger Desert, China

    Science.gov (United States)

    Li, Xinrong

    2016-04-01

    Biological soil crust (BSC) is a vital component in the stabilized sand dunes with a living cover up to more than 70% of the total, which has been considered as a bio-mediator that directly influences and regulates the sand dune ecosystem processes. However, its influences on soil hydrological processes have been long neglected in Chinese deserts. In this study, BSCs of different successional stages were chose to test their influence on the hydrological processes of stabilized dune, where the groundwater deep exceeds 30m, further to explore why occur the sand-binding vegetation replacement between shrubs and herbs. Our long-term observation (60 years) shows that cyanobacteria crust has been colonized and developed after 3 years since the sand-binding vegetation has been established and dune fixation using planted xerophytic shrubs and made sand barrier (straw-checkerboard) on shifting dune surface, lichen and moss crust occurred after 20 years, and the cover of moss dominated crust could reach 70 % after 50 years. The colonization and development of BSC altered the initial soil water balance of revegetated areas by influencing rainfall infiltration, soil evaporation and dew water entrapment. The results show that BSC obviously reduced the infiltration that occurred during most rainfall events (80%), when rainfall was greater than 5 mm or less than 20 mm. The presence of BSC reduced evaporation of topsoil after small rainfall (facilitated topsoil evaporation when rainfall reached 10 mm. The amount of dew entrapment increases with the succession of BSC. Moreover, the effect of the later successional BSC to dew entrapment, rainfall infiltration and evaporation was more obvious than the early successional BSC on stabilized dunes. In general, BSC reduced the amount of rainfall water that reached deeper soil (0.4-3m), which is where the roots of shrubs are primarily distributed. These changes in the soil moisture pattern induced shifting of sand-binding vegetation from

  5. Techniques for Fault Detection and Visualization of Telemetry Dependence Relationships for Root Cause Fault Analysis in Complex Systems

    Science.gov (United States)

    Guy, Nathaniel

    This thesis explores new ways of looking at telemetry data, from a time-correlative perspective, in order to see patterns within the data that may suggest root causes of system faults. It was thought initially that visualizing an animated Pearson Correlation Coefficient (PCC) matrix for telemetry channels would be sufficient to give new understanding; however, testing showed that the high dimensionality and inability to easily look at change over time in this approach impeded understanding. Different correlative techniques, combined with the time curve visualization proposed by Bach et al (2015), were adapted to visualize both raw telemetry and telemetry data correlations. Review revealed that these new techniques give insights into the data, and an intuitive grasp of data families, which show the effectiveness of this approach for enhancing system understanding and assisting with root cause analysis for complex aerospace systems.

  6. A novel method for performance improvement of optical CDMA system using alterable concatenated code

    Science.gov (United States)

    Qiu, Kun; Zhang, Chongfu

    2007-04-01

    A novel method using alterable concatenated code to pre-encode is proposed to reduce the impact of system impairment and multiple access interference (MAI) in optical code division multiple access (OCDMA) system, comprehensive comparisons between different concatenated code type and forward error correcting (FEC) scheme are studied by simulation. In the scheme, we apply concatenated coding to the embedded modulation scheme, and optical orthogonal code (OOC) is employed as address sequence code, an avalanche photodiode (APD) is selected as the system receiver. The bit error rate (BER) performance is derived taking into account the effect of some noises, dispersion power penalty and the MAI. From both theoretical analysis and numerical results, we can show that the proposed system has good performance at a BER of 10 -9 with a gain of 6.4 dB improvement achieved using the concatenated code as the pre-code, and this scheme permits implementation of a cost effective OCDMA system.

  7. Cone-beam computed tomography analysis of the apical third of curved roots after mechanical preparation with different automated systems

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira, Cesar Augusto Pereira; Pascoalato, Cristina [University of Southern Santa Catarina (UNISUL), Tubarao, SC (Brazil); Meurer, Maria Ines [Federal University of Santa Catarina (UFSC), Florianopolis, SC (Brazil); Silva, Silvio Rocha Correa, E-mail: silvio@foar.unesp.b [Sao Paulo State University (UNESP), Araraquara, SP (Brazil)

    2009-07-01

    The present study evaluated by cone-beam computed tomography (CBCT) the apical canal transportation and centralizing ability of different automated systems after root canal preparation. The mesiobuccal canals of maxillary first molars (n=10 per group) were prepared with: GI - reciprocating system with K-Flexofile; GII - reciprocating system with NiTiFlex files; GIII - rotary system with K3 instruments; GIV - rotary system with RaCe instruments. CBCT scans were taken before and after biomechanical preparation up to a 40.02 diameter. Canal transportation was determined by measuring the smallest distance between the inner canal walls and the mesial and distal sides of the root. The centralization ability corresponded to the difference between the measurements from transportation evaluation, using the linear voxel to voxel method of analysis. The mean transportation was 0.06 +- 0.14 mm, with a tendency to deviate to the mesial side of the root (n=22), with no statistically significant difference among the groups (p=0.4153). The mean centralization index was 0.15 +- 0.65 also without statistically significant difference among the groups (p=0.0881). It may be concluded that apical canal transportation and centralization ability were not influenced by the type of mechanical movement and instruments used. (author)

  8. Assessing the role of deep rooted vegetation in the climate system with model simulations: mechanism, comparison to observations and implications for Amazonian deforestation

    Energy Technology Data Exchange (ETDEWEB)

    Kleidon, A.; Heimann, M. [Max-Planck-Institut fuer Meteorologie, Hamburg (Germany)

    2000-02-01

    Deep rooted vegetation (of up to 68 m) has been found in many parts of the tropics. However, models of the general atmospheric circulation (GCMs) typically use rooting depths of less than 2 m in their land surface parametrizations. How does the incorporation of deep roots into such a model affect the simulated climate? We assess this question by using a GCM and find that deeper roots lead to a pronounced seasonal response. During the dry season, evapotranspiration and the associated latent heat flux are considerably increased over large regions leading to a cooling of up to 8 K. The enhanced atmospheric moisture is transported towards the main convection areas in the inner tropical convergence zone where it supplies more energy to convection thus intensifying the tropical circulation patterns. Comparison to different kinds of data reveals that the simulation with deeper roots is much closer to observations. The inclusion of deep roots also leads to a general increased climatic sensitivity to rooting depth change. We investigate this aspect in the context of the climatic effects of large-scale deforestation in Amazonia. Most of the regional and remote changes can be attributed to the removal of deep roots. We conclude that deep rooted vegetation is an important part of the tropical climate system. Without the consideration of deep roots, the present-day surface climate cannot adequately be simulated. (orig.)

  9. The biocontrol endophytic bacterium Pseudomonas fluorescens PICF7 induces systemic defense responses in aerial tissues upon colonization of olive roots

    Directory of Open Access Journals (Sweden)

    Carmen eGómez-Lama Cabanás

    2014-09-01

    Full Text Available Pseudomonas fluorescens PICF7, a native olive root endophyte and effective biocontrol agent (BCA against Verticillium wilt of olive, is able to trigger a broad range of defense responses in root tissues of this woody plant. In order to elucidate whether strain PICF7 also induces systemic defense responses in above-ground organs, aerial tissues of olive plants grown under non-gnotobiotic conditions were collected at different time points after root bacterization with this endophytic BCA. A suppression subtractive hybridization (SSH cDNA library, enriched in up-regulated genes, was generated. This strategy enabled the identification of 376 ESTs (99 contigs and 277 singlets, many of them related to response to different stresses. Five ESTs, involved in defense responses, were selected to carry out time-course quantitative real-time PCR (qRT-PCR experiments aiming to: (i validate the induction of these genes, and (ii shed light on their expression pattern along time (from 1 to 15 days. Induction of olive genes potentially coding for lypoxigenase 2, catalase, 1-aminocyclopropane-1-carboxylate oxidase and phenylananine ammonia-lyase was thus confirmed at some time points. Computational analysis also revealed that different transcription factors were up-regulated in olive aerial tissues (i.e. jerf, bHLH, WRKYs, as previously reported for roots. Results confirmed that root colonization by this endophytic bacterium does not only trigger defense responses in this organ but also mount a wide array of systemic defense responses in distant tissues (stems, leaves. This sheds light on how olive plants respond to the ‘non-hostile’ colonization by a bacterial endophyte and how induced defense response can contribute to the biocontrol activity of strain PICF7.

  10. Towards a continuous operational system to estimate the root-zone soil moisture from intermittent remotely sensed surface moisture

    Science.gov (United States)

    Ragab, R.

    1995-12-01

    A study has been carried out to develop and evaluate a system to estimate soil moisture content in the root-zone using active microwaves from the European Remote Sensing Satellite, ERS-1, to measure moisture content in the top 10 cm of the soil profile. Two permanent grass sites in the UK with contrasting soil types, clayey and sandy, were selected for this study. The system consists of an initialization phase, which provides surface and root-zone moisture contents as initial values for the dynamic phase of a soil water balance model. The initial value of surface moisture can be either a remotely sensed or a measured value. The surface moisture value for a given day is in turn used to derive the initial value of the root-zone moisture for the same day. This can be obtained either from an empirical relationship for drying or wetting conditions, or during drying conditions alone. Both types of relationship have been established for each of the sites, with strong coefficient of determination, R2. The two-layer soil dynamic model requires as input daily rainfall, evapotranspiration and three soil physical parameters—soil moisture at field capacity, wilting point and a pseudo-diffusivity coefficient. The first layer represents the remotely sensed layer, taken as 0-10 cm, and the second represents the root-zone, taken as 0-50 cm, for both sites. The model has been run for 1992 and 1993. The model was not initialized by remote sensing data owing to an insufficient number of microwave backscatter-surface moisture data pairs to produce a relationship with good R2. It is hoped that the continuing collection of data will improve the relationships. Initial soil moisture contents of both layers were considered to be at field capacity, which is usually the case during winter time. The dynamic model, which offers a good balance between accurate description of the processes and minimum input of data, proved capable of simulating both surface and root-zone moisture content

  11. Soil transfers from valley oak (Quercus lobata Nee) stands increase ectomycorrhizal diversity and alter root and shoot growth on valley oak seedlings.

    Science.gov (United States)

    Berman, J T; Bledsoe, C S

    1998-02-01

    Soils from valley oak (Quercus lobata Nee) riparian areas of the Cosumnes River Nature Conservancy Preserve near Sacramento, California were added to growth medium of valley oak seedlings grown in a greenhouse or in agricultural fields at Cosumnes which probably once supported valley oak trees and are now replanted with native riparian vegetation or allowed to revegetate naturally. Agricultural field soil from the Cosumnes River Preserve was presumed to be low or lacking in ectomycorrhizal inoculum. The study was designed to (1) determine whether valley oak stand soil transfer could cause mycorrhizal infection on valley oak seedlings in an agricultural field and in a greenhouse, (2) describe ectomycorrhizal morphological types formed on valley oak seedlings, and (3) determine whether seedling growth is enhanced more by transfer of natural valley oak stand soil than agricultural field soil. In the field study, transfer of forest soil increased average ectomycorrhizal diversity (2.4 types) more than transfer of agricultural field soil (1.2 types). Valley oak seedlings were responsive to ectomycorrhizal infection in the field study. With increase in mycorrhizal infection there was an increase in shoot growth at the expense of root growth. In the greenhouse study, both percent mycorrhizal infection and mycorrhizal diversity were increased more by transfer of oak forest and woodland soils than agricultural field soil. Eight morphotypes occurred on seedlings in forest and woodland soils but only three morphotypes in agricultural soil. This result strongly suggests that the agricultural field also harbors ectomycorrhizal propagules but forest and woodland soils support a more abundant and diverse ectomycorrhizal flora. PMID:24578047

  12. Proteomic profiling analysis reveals that glutathione system plays important roles responding to osmotic stress in wheat (Triticum aestivum L.) roots.

    Science.gov (United States)

    Ma, Jianhui; Dong, Wen; Zhang, Daijing; Gao, Xiaolong; Jiang, Lina; Shao, Yun; Tong, Doudou; Li, Chunxi

    2016-01-01

    Wheat is one of the most important crops in the world, and osmotic stress has become one of the main factors affecting wheat production. Understanding the mechanism of the response of wheat to osmotic stress would be greatly significant. In the present study, isobaric tag for relative and absolute quantification (iTRAQ) was used to analyze the changes of protein expression in the wheat roots exposed to different osmotic stresses. A total of 2,228 expressed proteins, including 81 differentially expressed proteins, between osmotic stress and control, were found. The comprehensive analysis of these differentially expressed proteins revealed that osmotic stress increased the variety of expressed proteins and suppressed the quantity of expressed proteins in wheat roots. Furthermore, the proteins for detoxifying and reactive oxygen species scavenging, especially the glutathione system, played important roles in maintaining organism balance in response to osmotic stress in wheat roots. Thus, the present study comprehensively describes the protein expression changes in wheat roots in response to osmotic stress, providing firmer foundation to further study the mechanism of osmotic resistance in wheat. PMID:27602297

  13. Root controls on water redistribution and carbon uptake in the soil-plant system under current and future climate

    Science.gov (United States)

    Volpe, V.; Marani, M.; Albertson, J. D.; Katul, G.

    2013-10-01

    Understanding photosynthesis and plant water management as a coupled process remains an open scientific problem. Current eco-hydrologic models characteristically describe plant photosynthetic and hydraulic processes through ad hoc empirical parameterizations with no explicit accounting for the main pathways over which carbon and water uptake interact. Here, a soil-plant-atmosphere continuum model is proposed that mechanistically couples photosynthesis and transpiration rates, including the main leaf physiological controls exerted by stomata. The proposed approach links the soil-to-leaf hydraulic transport to stomatal regulation, and closes the coupled photosynthesis-transpiration problem by maximizing leaf carbon gain subject to a water loss constraint. The approach is evaluated against field data from a grass site and is shown to reproduce the main features of soil moisture dynamics and hydraulic redistribution. In particular, it is shown that the differential soil drying produced by diurnal root water uptake drives a significant upward redistribution of moisture both through a conventional Darcian flow and through the root system, consistent with observations. In a numerical soil drying experiment, it is demonstrated that more than 50% of diurnal transpiration is supplied by nocturnal upward water redistribution, and some 12% is provided directly through root hydraulic redistribution. For a prescribed leaf area density, the model is then used to diagnose how elevated atmospheric CO2 concentration and increased air temperature jointly impact soil moisture, transpiration, photosynthesis, and whole-plant water use efficiency, along with compensatory mechanisms such as hydraulic lift using several canonical forms of root-density distribution.

  14. Capturing Arabidopsis Root Architecture Dynamics with root-fit Reveals Diversity in Responses to Salinity1[W][OPEN

    Science.gov (United States)

    Julkowska, Magdalena M.; Hoefsloot, Huub C.J.; Mol, Selena; Feron, Richard; de Boer, Gert-Jan; Haring, Michel A.; Testerink, Christa

    2014-01-01

    The plant root is the first organ to encounter salinity stress, but the effect of salinity on root system architecture (RSA) remains elusive. Both the reduction in main root (MR) elongation and the redistribution of the root mass between MRs and lateral roots (LRs) are likely to play crucial roles in water extraction efficiency and ion exclusion. To establish which RSA parameters are responsive to salt stress, we performed a detailed time course experiment in which Arabidopsis (Arabidopsis thaliana) seedlings were grown on agar plates under different salt stress conditions. We captured RSA dynamics with quadratic growth functions (root-fit) and summarized the salt-induced differences in RSA dynamics in three growth parameters: MR elongation, average LR elongation, and increase in number of LRs. In the ecotype Columbia-0 accession of Arabidopsis, salt stress affected MR elongation more severely than LR elongation and an increase in LRs, leading to a significantly altered RSA. By quantifying RSA dynamics of 31 different Arabidopsis accessions in control and mild salt stress conditions, different strategies for regulation of MR and LR meristems and root branching were revealed. Different RSA strategies partially correlated with natural variation in abscisic acid sensitivity and different Na+/K+ ratios in shoots of seedlings grown under mild salt stress. Applying root-fit to describe the dynamics of RSA allowed us to uncover the natural diversity in root morphology and cluster it into four response types that otherwise would have been overlooked. PMID:25271266

  15. Root fractures

    DEFF Research Database (Denmark)

    Andreasen, Jens Ove; Christensen, Søren Steno Ahrensburg; Tsilingaridis, Georgios

    2012-01-01

    The purpose of this study was to analyze tooth loss after root fractures and to assess the influence of the type of healing and the location of the root fracture. Furthermore, the actual cause of tooth loss was analyzed.......The purpose of this study was to analyze tooth loss after root fractures and to assess the influence of the type of healing and the location of the root fracture. Furthermore, the actual cause of tooth loss was analyzed....

  16. Square Root +

    Science.gov (United States)

    Frederiksen, John G.

    1969-01-01

    A rational presentation of the so-called long division method for extracting the square root of a number. Diagrams are used to show relationship of this technique to the binomial theorem. Presentation exposes student to many facets of mathematics in addition to the mechanics of funding square root and cube root. Geometry, algebraic statements,…

  17. Effects of 24-Epibrassinolide on Antioxidant System in Cucumber Seedling Roots Under Hypoxia Stress

    Institute of Scientific and Technical Information of China (English)

    KANG Yun-yan; GUO Shi-rong; LI Juan; DUAN Jiu-ju

    2007-01-01

    This article aims to study the effects of exogenous 24-epibrassinolide (EBR) on the changes in ROS, activities of antioxidative enzymes and antioxidants in cucumber (Cucumis sativus L.) seedling roots under hypoxia stress. Seedlings of a hypoxianormoxic or hypoxic nutrient solutions that were added or not added with 10-3 mg L-1 EBR. Under hypoxia stress, the ROS levels and the lipid peroxidation were significantly increased in the roots upon exposure to hypoxia stress, which were inhibited by EBR application. The EBR treatment significantly increased the seedlings growth and SOD, APX, GR activities, and contents of AsA and GSH under hypoxia stress. From the results obtained in this study, it can be concluded that oxidative damage on seedling roots by hypoxia stress can be considerably alleviated and the tolerance of plants was elevated.

  18. [Low-cost simple anchorage systems in the removable hybrid prosthesis. Locator Root Attachment and Würzburg post].

    Science.gov (United States)

    Teubner, Eckart; Galindo, Martha L; Arnold, Dario; Marinello, Carlo P

    2009-01-01

    For a simple and provisional retention of a removable prosthesis, less expensive direct retainers are an option compared to indirect cast gold copings with attachment. The Dalbo-Rotex-retainer and the Ticap-system are clinically established. The Locator Root attachment and the Würzburger Stift were recently introduced. The Locator Root attachment uses a massive profiled cylindrical post as a radicular anchorage. The Würzburger Stift has a small endodontic part which is retained by four spreadable lamellae in a convergent cavity. They further differ in the design of the male and female part. Depending on the clinical situation these characteristics can offer benefits and disadvantages. Both systems are documented and their indication, advantages and restrictions are discussed with clinical relevance. PMID:20112639

  19. [Comparative assessment of inductive effects of Azospirillum lectins with different antigenic properties on the signal systems of wheat seedling roots].

    Science.gov (United States)

    Alen'kina, S A; Petrova, L P; Sokolova, M K; Chernyshova, M P; Trutneva, K A; Bogatyrev, V A; Nikitina, V E

    2014-01-01

    The lectins of associative nitrogen-fixing bacteria Azospirillum brasilense Sp7 and its mutant A. brasilense Sp7.2.3 were shown to have different effects on the components of the wheat seedling root signal system, namely to regulate the levels of cAMP, nitric oxide, diacylglycerol, and salicylic acid, as well as to induce the activities of superoxide dismutase and lipoxygenase. Our results make it possible to consider azospirilla lectins as inducers of the signal systems in wheat seedling roots, since they cause development of several flows of primary signals. These data are of general biological importance, since lectins are present in all living organisms and most ot the functions of lectins remain insufficiently understood. PMID:25844444

  20. An easily operated apparatus to register the amount of the aqueous solution absorbed by a plant root system

    Directory of Open Access Journals (Sweden)

    Jerzy Czerski

    2015-05-01

    Full Text Available An easily operated apparatus was constructed (figs. 1,2 allowing to register the amount of the aqueous solution absorbed by a planet root system. The device allows for simultaneous registering of the solution absorption by two plants. The recording of a definite volume of the absorbed solution can be controlled within wide limits. Experiments (figs. 3,4 confirmed the efficiency of the apparatus.

  1. Trichosanthes dioica root extract induces tumor proliferation and attenuation of antioxidant system in albino mice bearing Ehrlich ascites carcinoma

    OpenAIRE

    Bhattacharya, Sanjib; Haldar, Pallab Kanti

    2011-01-01

    Trichosanthes dioica Roxb. (Cucurbitaceae), called pointed gourd in English, is a dioecious climber grown widely in the Indian subcontinent. The present study assessed the influence of treatment of hydroalcoholic extract of Trichosanthes dioica root (TDA) on Ehrlich ascites carcinoma (EAC) in Swiss albino mice with effects on antioxidant systems. Twenty-four hours after intraperitoneal inoculation of tumor (EAC) cells in mice, TDA was administered at 25 and 50 mg/kg for 8 consecutive days. On...

  2. Minimal Apical Enlargement for Penetration of Irrigants to the Apical Third of Root Canal System: A Scanning Electron Microscope Study

    OpenAIRE

    P. Srikanth; Krishna, Amaravadi Gopi; Srinivas, Siva; Reddy, E Sujayeendranatha; Battu, Someshwar; Aravelli, Swathi

    2015-01-01

    Background: The aim of this study was to determine minimal apical enlargement for irrigant penetration into apical third of root canal system using scanning electron microscope (SEM). Materials and Methods: Distobuccal canals of 40 freshly extracted human maxillary first molar teeth were instrumented using crown-down technique. The teeth were divided into four test groups according to size of their master apical file (MAF) (#20, #25, #30, #35 0.06% taper), and two control groups. After final ...

  3. Tank waste remediation system optimized processing strategy with an altered treatment scheme

    International Nuclear Information System (INIS)

    This report provides an alternative strategy evolved from the current Hanford Site Tank Waste Remediation System (TWRS) programmatic baseline for accomplishing the treatment and disposal of the Hanford Site tank wastes. This optimized processing strategy with an altered treatment scheme performs the major elements of the TWRS Program, but modifies the deployment of selected treatment technologies to reduce the program cost. The present program for development of waste retrieval, pretreatment, and vitrification technologies continues, but the optimized processing strategy reuses a single facility to accomplish the separations/low-activity waste (LAW) vitrification and the high-level waste (HLW) vitrification processes sequentially, thereby eliminating the need for a separate HLW vitrification facility

  4. Tank waste remediation system optimized processing strategy with an altered treatment scheme

    Energy Technology Data Exchange (ETDEWEB)

    Slaathaug, E.J.

    1996-03-01

    This report provides an alternative strategy evolved from the current Hanford Site Tank Waste Remediation System (TWRS) programmatic baseline for accomplishing the treatment and disposal of the Hanford Site tank wastes. This optimized processing strategy with an altered treatment scheme performs the major elements of the TWRS Program, but modifies the deployment of selected treatment technologies to reduce the program cost. The present program for development of waste retrieval, pretreatment, and vitrification technologies continues, but the optimized processing strategy reuses a single facility to accomplish the separations/low-activity waste (LAW) vitrification and the high-level waste (HLW) vitrification processes sequentially, thereby eliminating the need for a separate HLW vitrification facility.

  5. Clifford algebra is the natural framework for root systems and Coxeter groups. Group theory: Coxeter, conformal and modular groups

    CERN Document Server

    Dechant, Pierre-Philippe

    2016-01-01

    In this paper, we make the case that Clifford algebra is the natural framework for root systems and reflection groups, as well as related groups such as the conformal and modular groups: The metric that exists on these spaces can always be used to construct the corresponding Clifford algebra. Via the Cartan-Dieudonn\\'e theorem all the transformations of interest can be written as products of reflections and thus via `sandwiching' with Clifford algebra multivectors. These multivector groups can be used to perform concrete calculations in different groups, e.g. the various types of polyhedral groups, and we treat the example of the tetrahedral group $A_3$ in detail. As an aside, this gives a constructive result that induces from every 3D root system a root system in dimension four, which hinges on the facts that the group of spinors provides a double cover of the rotations, the space of 3D spinors has a 4D euclidean inner product, and with respect to this inner product the group of spinors can be shown to be cl...

  6. Investigations of the Effects of Altered Vestibular System Function on Hindlimb Anti-Gravity Muscles

    Science.gov (United States)

    Lowery, Mary Sue

    1998-01-01

    Exposure to different gravitational environments, both the microgravity of spaceflight and the hypergravity of centrifugation, result in altered vestibulo-spinal function which can be reversed by reacclimation to earth gravity (2). Control of orientation, posture, and locomotion are functions of the vestibular system which are altered by changes in gravitational environment. Not only is the vestibular system involved with coordination and proprioception, but the gravity sensing portion of the vestibular system also plays a major role in maintaining muscle tone through projections to spinal cord motoneurons that control anti-gravity muscles. I have been involved with investigations of several aspects of the link between vestibular inputs and muscle morphology and function during my work with Dr. Nancy Daunton this summer and the previous summer. We have prepared a manuscript for submission (4) to Aviation, Space, and Environmental Medicine based on work that I performed last summer in Dr. Daunton's lab. Techniques developed for that project will be utilized in subsequent experiments begun in the summer of 1998. I have been involved with the development of a pilot project to test the effects of vestibular galvanic stimulation (VGS) on anti-gravity muscles and in another project testing the effects of the ototoxic drug streptomycin on the otolith-spinal reflex and anti-gravity muscle morphology.

  7. Cleaning efficacy of reciprocal and rotary systems in the removal of root canal filling material

    Science.gov (United States)

    Koçak, Mustafa Murat; Koçak, Sibel; Türker, Sevinç Aktemur; Sağlam, Baran Can

    2016-01-01

    Aim: The aim of this study was to compare the efficacy of hand file, nickel titanium rotary instrument, and two reciprocating instruments for removing gutta-percha and sealer from the root canals. Materials and Methods: Eighty-eight mandibular premolar teeth were used. The root canals were shaped and filled with gutta-percha and a resin-based sealer. The specimens were divided into four groups according to the technique by which the root filling material was removed: Group 1 — Wave One; Group 2 — Reciproc; Group 3 — ProTaper; and Group 4 — Gates-Glidden burs and stainless steel hand file. Then teeth were split longitudinally and photographed. The images were transferred to a computer. The ratio of remaining filling material to the root canal periphery was calculated with the aid of ImageJ software. Statistical analysis was performed using Kruskal–Wallis and Mann–Whitney tests. Results: A significant difference was found among all groups (P < 0.001). The WaveOne group demonstrated significantly less remaining filling material. The greatest amount of filling material was found in specimens where gutta-percha was removed with Gates-Glidden burs and stainless steel hand file. Conclusion: The reciprocating files were found to be significantly more effective in removing the filling material from the canal walls compared to the rotational file and hand file. PMID:27099429

  8. Using dye tracer for visualizing roots impact on soil structure and soil porous system

    Czech Academy of Sciences Publication Activity Database

    Kodešová, R.; Němeček, K.; Žigová, Anna; Nikodem, A.; Fér, M.

    2015-01-01

    Roč. 70, č. 11 (2015), s. 1439-1443. ISSN 0006-3088 R&D Projects: GA ČR GA526/08/0434 Institutional support: RVO:67985831 Keywords : field sections * macro-scale * micro-scale, * micromorphological images * plant * ponding dye infiltration * roots * soil structure Subject RIV: DF - Soil Science Impact factor: 0.827, year: 2014

  9. Ectomycorrhizal fine root systems in the air - polluted mountain forests of the ore mountains

    Czech Academy of Sciences Publication Activity Database

    Lepšová, Anna; Kocourek, R.; Cudlín, Pavel

    Jíloviště Strnady: VÚLHM, 2002, s. 342. ISBN 80-86461-24-6 R&D Projects: GA MŠk OK 355 Institutional research plan: CEZ:AV0Z6087904 Keywords : Picea abies * fine roots * ectomycorrhiza Subject RIV: GK - Forestry

  10. Phenotype analysis of Russian dandelion root tissues from the national plant germplasm system collection

    Science.gov (United States)

    Russian dandelion (Taraxacum kok-saghyz) (TKS) produces high quality natural rubber (NR), cis-1,4 polyisoprene, by biosynthesis, and has been used historically as a source of NR during times of short supply or high prices for Hevea NR. The rubber is primarily located in root tissues along with appre...

  11. Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments

    Directory of Open Access Journals (Sweden)

    Javier eCanales

    2014-02-01

    Full Text Available Nitrogen (N is an essential macronutrient for plant growth and development. Plants adapt to changes in N availability partly by changes in global gene expression. We integrated publicly available root microarray data under contrasting nitrate conditions to identify new genes and functions important for adaptive nitrate responses in Arabidopsis thaliana roots. Overall, more than two thousand genes exhibited changes in expression in response to nitrate treatments in Arabidopsis thaliana root organs. Global regulation of gene expression by nitrate depends largely on the experimental context. However, despite significant differences from experiment to experiment in the identity of regulated genes, there is a robust nitrate response of specific biological functions. Integrative gene network analysis uncovered relationships between nitrate-responsive genes and eleven highly co-expressed gene clusters (modules. Four of these gene network modules have robust nitrate responsive functions such as transport, signaling and metabolism. Network analysis hypothesized G2-like transcription factors are key regulatory factors controlling transport and signaling functions. Our meta-analysis highlights the role of biological processes not studied before in the context of the nitrate response such as root hair development and provides testable hypothesis to advance our understanding of nitrate responses in plants.

  12. Echium acanthocarpum hairy root cultures, a suitable system for polyunsaturated fatty acid studies and production

    Directory of Open Access Journals (Sweden)

    Ravelo Ángel G

    2011-04-01

    Full Text Available Abstract Background The therapeutic and health promoting role of highly unsaturated fatty acids (HUFAs from fish, i.e. eicosapentaenoic acid (EPA, 20:5n-3 and docosahexaenoic acid (DHA, 22:6n-3 are well known. These same benefits may however be shared by some of their precursors, the polyunsaturated fatty acids (PUFAs, such as stearidonic acid (SDA, 18:4 n-3. In order to obtain alternative sources for the large-scale production of PUFAs, new searches are being conducted focusing on higher plants oils which can contain these n-3 and n-6 C18 precursors, i.e. SDA and GLA (18:3n-6, γ-linolenic acid. Results The establishment of the novel Echium acanthocarpum hairy root cultures represents a powerful tool in order to research the accumulation and metabolism of fatty acids (FAs in a plant particularly rich in GLA and SDA. Furthermore, this study constitutes the first example of a Boraginaceae species hairy root induction and establishment for FA studies and production. The dominant PUFAs, 18:2n-6 (LA, linoleic acid and 18:3n-6 (GLA, accounted for about 50% of total FAs obtained, while the n-3 PUFAs, 18:3n-3 (ALA, α-linolenic acid and 18:4n-3 (SDA, represented approximately 5% of the total. Production of FAs did not parallel hairy root growth, and the optimal productivity was always associated with the highest biomass density during the culture period. Assuming a compromise between FA production and hairy root biomass, it was determined that sampling times 4 and 5 gave the most useful FA yields. Total lipid amounts were in general comparable between the different hairy root lines (29.75 and 60.95 mg/g DW, with the major lipid classes being triacylglycerols. The FAs were chiefly stored in the hairy roots with very minute amounts being released into the liquid nutrient medium. Conclusions The novel results presented here show the utility and high potential of E. acanthocarpum hairy roots. They are capable of biosynthesizing and accumulating a large

  13. Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data.

    Science.gov (United States)

    Suresh, Niraj; Stephens, Sean A; Adams, Lexor; Beck, Anthon N; McKinney, Adriana L; Varga, Tamas

    2016-01-01

    Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere, as well as processes with important implications to climate change and crop management. Quantitative size information on roots in their native environment is invaluable for studying root growth and environmental processes involving plants. X-ray computed tomography (XCT) has been demonstrated to be an effective tool for in situ root scanning and analysis. We aimed to develop a costless and efficient tool that approximates the surface and volume of the root regardless of its shape from three-dimensional (3D) tomography data. The root structure of a Prairie dropseed (Sporobolus heterolepis) specimen was imaged using XCT. The root was reconstructed, and the primary root structure was extracted from the data using a combination of licensed and open-source software. An isosurface polygonal mesh was then created for ease of analysis. We have developed the standalone application imeshJ, generated in MATLAB(1), to calculate root volume and surface area from the mesh. The outputs of imeshJ are surface area (in mm(2)) and the volume (in mm(3)). The process, utilizing a unique combination of tools from imaging to quantitative root analysis, is described. A combination of XCT and open-source software proved to be a powerful combination to noninvasively image plant root samples, segment root data, and extract quantitative information from the 3D data. This methodology of processing 3D data should be applicable to other material/sample systems where there is connectivity between components of similar X-ray attenuation and difficulties arise with segmentation. PMID:27168248

  14. Effects of PEG-Induced Water Deficit in Solanum nigrum on Zn and Ni Uptake and Translocation in Split Root Systems

    Directory of Open Access Journals (Sweden)

    Urs Feller

    2015-06-01

    Full Text Available Drought strongly influences root activities in crop plants and weeds. This paper is focused on the performance of the heavy metal accumulator Solanum nigrum, a plant which might be helpful for phytoremediation. The water potential in a split root system was decreased by the addition of polyethylene glycol (PEG 6000. Rubidium, strontium and radionuclides of heavy metals were used as markers to investigate the uptake into roots, the release to the shoot via the xylem, and finally the basipetal transport via the phloem to unlabeled roots. The uptake into the roots (total contents in the plant was for most makers more severely decreased than the transport to the shoot or the export from the shoot to the unlabeled roots via the phloem. Regardless of the water potential in the labeling solution, 63Ni and 65Zn were selectively redistributed within the plant. From autoradiographs, it became evident that 65Zn accumulated in root tips, in the apical shoot meristem and in axillary buds, while 63Ni accumulated in young expanded leaves and roots but not in the meristems. Since both radionuclides are mobile in the phloem and are, therefore, well redistributed within the plant, the unequal transfer to shoot and root apical meristems is most likely caused by differences in the cell-to-cell transport in differentiation zones without functional phloem (immature sieve tubes.

  15. Regulation of Root Length and Lateral Root Number in Trifoliate Orange Applied by Peroxide Hydrogen and Arbuscular Mycorrhizal Fungi

    Directory of Open Access Journals (Sweden)

    Chun-Yan LIU

    2014-06-01

    Full Text Available Root system morphology (RSM in plants plays a key role in acquiring nutrients from the soil and is also altered by abiotic or biotic factors including soil microorganisms and signal molecules. The present study was made to evaluate the effects of an arbuscular mycorrhizal fungus (AMF, Glomus versiforme and exogenous peroxide hydrogen (H2O2, 0, 1 and 100 μM on root length, lateral root number and activities of polyamine-metabolized enzymes in trifoliate orange (Poncirus trifoliata seedlings. After 5 months of inoculation with AMF, root mycorrhizal colonization was significantly increased by application of 1 μM H2O2, but markedly restrained by 100 μM H2O2. Inoculation with AMF significantly increased the taproot length and the number of second- and third-order lateral roots under 1 and 100 μM H2O2application. The AMF infection significantly increased 0-1 cm classed root length and total root length, regardless of H2O2 concentration. In general, inoculation with AMF increased arginine decarboxylase (ADC and ornithine decarboxylase (ODC activity of roots under 0, 1 and 100 μM H2O2, increased diamine oxidase (DAO activity of roots under 0 μM H2O2 and decreased DAO activity of roots under 1 and 100 μM H2O2. Root polyamine oxidase (PAO activity was similar between AMF and non-AMF seedlings, irrespectively of H2O2concentration. Results suggest that lower concentration of H2O2(1 μM might be regarded as a signal to stimulate mycorrhizal and lateral root development through increase of ADC and ODC and decrease of DAO, while high concentration of 2O2 (100 μM as a toxic compound of reactive oxygen species restricted AMF colonization.

  16. Oral drug delivery systems comprising altered geometric configurations for controlled drug delivery.

    Science.gov (United States)

    Moodley, Kovanya; Pillay, Viness; Choonara, Yahya E; du Toit, Lisa C; Ndesendo, Valence M K; Kumar, Pradeep; Cooppan, Shivaan; Bawa, Priya

    2012-01-01

    Recent pharmaceutical research has focused on controlled drug delivery having an advantage over conventional methods. Adequate controlled plasma drug levels, reduced side effects as well as improved patient compliance are some of the benefits that these systems may offer. Controlled delivery systems that can provide zero-order drug delivery have the potential for maximizing efficacy while minimizing dose frequency and toxicity. Thus, zero-order drug release is ideal in a large area of drug delivery which has therefore led to the development of various technologies with such drug release patterns. Systems such as multilayered tablets and other geometrically altered devices have been created to perform this function. One of the principles of multilayered tablets involves creating a constant surface area for release. Polymeric materials play an important role in the functioning of these systems. Technologies developed to date include among others: Geomatrix(®) multilayered tablets, which utilizes specific polymers that may act as barriers to control drug release; Procise(®), which has a core with an aperture that can be modified to achieve various types of drug release; core-in-cup tablets, where the core matrix is coated on one surface while the circumference forms a cup around it; donut-shaped devices, which possess a centrally-placed aperture hole and Dome Matrix(®) as well as "release modules assemblage", which can offer alternating drug release patterns. This review discusses the novel altered geometric system technologies that have been developed to provide controlled drug release, also focusing on polymers that have been employed in such developments. PMID:22312236

  17. Lodo de esgoto e sistema radicular da pupunheira Sewage sludge doses and the root system of peach palm

    Directory of Open Access Journals (Sweden)

    Fernando Vinicio Armas Vega

    2005-04-01

    Full Text Available Os efeitos do lodo de esgoto sobre o sistema radicular da pupunheira foram estudados em experimento em campo, em blocos casualizados, instalado em Ubatuba (SP, em julho 2001, na densidade de 5.000 plantas ha-1. As doses de lodo de esgoto fresco (79,7 % de umidade utilizadas foram de 0, 38, 76 e 152 t ha-1, equivalentes a 0, 100, 200 e 400 kg ha-1 de N. Os tratamentos foram aplicados no sulco de plantio, adicionando-se 15 g por planta de KCl como fonte de K. A análise do sistema radicular foi efetuada doze meses após, por meio de trado e de trincheiras e com o auxílio de fotos digitais. Detectou-se que o sistema radicular de pupunheiras com um ano de campo estava concentrado nas camadas superficiais (acima de 75 % nos primeiros 20 cm, assim como em distâncias de até 0,5 m da base da planta. O lodo de esgoto modificou positivamente a densidade do solo, alterando também favoravelmente a densidade das raízes. Houve aumento na biomassa radicular proporcional às doses de lodo de esgoto, existindo uma relação direta daquela com a fitomassa aérea. Doses de lodo equivalentes a 200 e 400 kg de N contribuíram para aprofundar o sistema radicular e proporcionaram maior quantidade relativa de raízes finas.The effects of sewage sludge doses on the root system of peach palm were studied in a field experiment, in randomized complete blocks, carried out in Ubatuba, state of São Paulo, Brazil. The trial was set up in July 2001, with a density of 5,000 plants ha-1. The sewage sludge doses (79.7 % water content were 0, 38, 76, and 152 t ha-1, which were equivalent to doses of 0, 100, 200, and 400 kg ha-1 of N. The treatments were applied in the planting furrow, and every plant was provided with K by a dose of 15 g potassium chloride. The root system was analyzed one year after planting using soil auger and digging of trenches and with the help of digital images. It was concluded that the root system of one-year old peach palm was concentrated in the

  18. Minimization of the root of a quadratic functional under a system of affine equality constraints with application to portfolio management

    Science.gov (United States)

    Landsman, Zinoviy

    2008-10-01

    We present an explicit closed form solution of the problem of minimizing the root of a quadratic functional subject to a system of affine constraints. The result generalizes Z. Landsman, Minimization of the root of a quadratic functional under an affine equality constraint, J. Comput. Appl. Math. 2007, to appear, see sciencedirect.com/science/journal/03770427>, articles in press, where the optimization problem was solved under only one linear constraint. This is of interest for solving significant problems pertaining to financial economics as well as some classes of feasibility and optimization problems which frequently occur in tomography and other fields. The results are illustrated in the problem of optimal portfolio selection and the particular case when the expected return of finance portfolio is certain is discussed.

  19. Alterations in Central Nervous System Serotonergic and Dopaminergic Synaptic Activity in Adulthood after Prenatal or Neonatal Chlorpyrifos Exposure

    OpenAIRE

    Aldridge, Justin E; Meyer, Armando; Seidler, Frederic J; Slotkin, Theodore A.

    2005-01-01

    Exposure to chlorpyrifos (CPF) alters neuronal development of serotonin (5HT) and dopamine systems, and we recently found long-term alterations in behaviors related to 5HT function. To characterize the synaptic mechanisms underlying these effects, we exposed developing rats to CPF regimens below the threshold for systemic toxicity, in three treatment windows: gestational days (GD) 17–20, postnatal days (PN) 1–4, or PN11–14. In early adulthood (PN60), we assessed basal neurotransmitter content...

  20. Impact of root-induced mobilization of zinc on stable Zn isotope variation in the soil-plant system.

    Science.gov (United States)

    Houben, David; Sonnet, Philippe; Tricot, Guillaume; Mattielli, Nadine; Couder, Eléonore; Opfergelt, Sophie

    2014-07-15

    Stable Zn isotopes are increasingly used to trace the source of metal pollution in the environment and to gain a better understanding of the biogeochemical cycle of Zn. In this work, we investigated the effect of plants on Zn isotope fractionation in the soil-plant system of the surface horizon of two Zn-rich Technosols (pH 6.73-7.51, total Zn concentration = 9470-56600 mg kg(-1)). In a column experiment, the presence of Agrostis capillaris L. significantly increased the mobilization of Zn from soil to leachate, predominantly as a result of root-induced soil acidification. The zinc isotope compositions of plants and leachates indicated that the Zn uptake by A. capillaris did not fractionate Zn isotopes as compared to the leachates. Within the plant, heavier Zn isotopes were preferentially retained in roots (Δ66Znroot - shoot=+0.24 to +0.40 ‰). More importantly, the Zn released in leachates due to root-induced mobilization was isotopically heavier than the Zn released in the absence of plants (Δ66Zn=+0.16 to +0.18 ‰). This indicates that the rhizosphere activity of A. capillaris mobilized Zn from another pool than the one that spontaneously releases Zn upon contact with the percolating solution. Mobilization of Zn by the roots might thus exert a stronger influence on the Zn isotope composition in the soil solution than the Zn uptake by the plant. This study highlights the key role of the rhizosphere activity in Zn release in soil and demonstrates that stable Zn isotopes provide a useful proxy for the detection of Zn mobilization in soil-plant systems. PMID:24955480

  1. Evaluation of Biomass Yield and Water Treatment in Two Aquaponic Systems Using the Dynamic Root Floating Technique (DRF)

    OpenAIRE

    Laura Silva; Eucario Gasca-Leyva; Edgardo Escalante; Kevin M Fitzsimmons; David Valdés Lozano

    2015-01-01

    The experiment evaluates the food production and water treatment of TAN, NO2−–N, NO3−–N, and PO43− in two aquaponics systems using the dynamic root floating technique (DRF). A separate recirculation aquaculture system (RAS) was used as a control. The fish cultured was Nile tilapia (Oreochromis niloticus). The hydroponic culture in one treatment (PAK) was pak choy (Brassica chinensis,) and in the other (COR) coriander (Coriandrum sativum). Initial and final weights were determined for the fis...

  2. Regulation of the High-Affinity Nitrate Transport System in Wheat Roots by Exogenous Abscisic Acid and Glutamine

    Institute of Scientific and Technical Information of China (English)

    Chao Cai; Xue-Qiang Zhao; Yong-Guan Zhu; Bin Li; Yi-Ping Tong; Zhen-Sheng Li

    2007-01-01

    Nitrate is a major nitrogen (N) source for most crops.Nitrate uptake by root cells is a key step of nitrogen metabolism and has been widely studied at the physiological and molecular levels.Understanding how nitrate uptake is regulated will help us engineer crops with improved nitrate uptake efficiency.The present study investigated the regulation of the high-affinity nitrate transport system (HATS) by exogenous abscisic acid (ABA) and glutamine (Gin) in wheat (Triticum aestivum L.) roots.Wheat seedlings grown in nutrient solution containing 2 mmollL nitrate as the only nitrogen source for 2 weeks were deprived of N for 4d and were then transferred to nutrient solution containing 50 μmol/L ABA, and 1 mmol/L Gin in the presence or absence of 2 mmol/L nitrate for 0, 0.5, 1, 2, 4, and 8 h.Treated wheat plants were then divided into two groups.One group of plants was used to investigate the mRNA levels of the HATS components NRT2 and NAR2 genes in roots through semi-quantitative RT-PCR approach, and the other set of plants were used to measure high-affinity nitrate influx rates in a nutrient solution containing 0.2 mmol/L 15 N-labeled nitrate.The results showed that exogenous ABA induced the expression of the TaNRT2.1, TaNRT2.2, TaNRT2.3, TaNAR2.1, and TaNAR2.2 genes in roots when nitrate was not present in the nutrient solution, but did not further enhance the induction of these genes by nitrate.Glutamine, which has been shown to inhibit the expression of NRT2 genes when nitrate is present in the growth media, did not inhibit this induction.When Gin was supplied to a nitrate-free nutrient solution, the expression of these five genes in roots was induced.These results imply that the inhibition by Gin of NRT2 expression occurs only when nitrate is present in the growth media.Although exogenous ABA and Gin induced HATS genes in the roots of wheat, they did not induce nitrate influx.

  3. How does undergraduate college biology students' level of understanding, in regard to the role of the seed plant root system, relate to their level of understanding of photosynthesis?

    Science.gov (United States)

    Njeng'ere, James Gicheha

    This research study investigated how undergraduate college biology students' level of understanding of the role of the seed plant root system relates to their level of understanding of photosynthesis. This research was conducted with 65 undergraduate non-majors biology who had completed 1 year of biology at Louisiana State University in Baton Rouge and Southeastern Louisiana University in Hammond. A root probe instrument was developed from some scientifically acceptable propositional statements about the root system, the process of photosynthesis, as well as the holistic nature of the tree. These were derived from research reviews of the science education and the arboriculture literature. This was administered to 65 students selected randomly from class lists of the two institutions. Most of the root probe's items were based on the Live Oak tree. An in-depth, clinical interview-based analysis was conducted with 12 of those tested students. A team of root experts participated by designing, validating and answering the same questions that the students were asked. A "systems" lens as defined by a team of college instructors, root experts (Shigo, 1991), and this researcher was used to interpret the results. A correlational coefficient determining students' level of understanding of the root system and their level of understanding of the process of photosynthesis was established by means of Pearson's r correlation (r = 0.328) using the SAS statistical analysis (SAS, 1987). From this a coefficient of determination (r2 = 0.104) was determined. Students' level of understanding of the Live Oak root system (mean score 5.94) was not statistically different from their level of understanding of the process of photosynthesis (mean score 5.54) as assessed by the root probe, t (129) = 0.137, p > 0.05 one tailed-test. This suggests that, to some degree, level of the root system limits level of understanding of photosynthesis and vice versa. Analysis of quantitative and qualitative

  4. Effect of parameter choice in root water uptake models – the arrangement of root hydraulic properties within the root architecture affects dynamics and efficiency of root water uptake

    OpenAIRE

    Bechmann, M.; Schneider, C; Carminati, A.; Vetterlein, D.; Attinger, S.; Hildebrandt, A

    2014-01-01

    Detailed three-dimensional models of root water uptake have become increasingly popular for investigating the process of root water uptake. However, they suffer from a lack of information on important parameters, particularly on the spatial distribution of root axial and radial conductivities, which vary greatly along a root system. In this paper we explore how the arrangement of those root hydraulic properties and branching within the root system affects modelled uptake dynamics, xylem water...

  5. Roots & Hollers

    OpenAIRE

    Kollman, Patrick L; Gorman, Thomas A.

    2011-01-01

    Roots & Hollers, 2011 A documentary by Thomas Gorman & Patrick Kollman Master’s Project Abstract: Roots & Hollers uncovers the wild American ginseng trade, revealing a unique intersection between Asia and rural America. Legendary in Asia for its healing powers, ginseng helps sustain the livelihoods of thousands in Appalachia. A single root can sell for thousands of dollars at auction. Shot on-location in the mountains of Kentucky and West Virginia, this student doc...

  6. Evaluation of dentinal defect formation after root canal preparation with two reciprocating systems and hand instruments: an in vitro study

    Science.gov (United States)

    Helvacioglu-Yigit, Dilek; Aydemir, Seda; Yilmaz, Ayca

    2015-01-01

    The purpose of this study was to evaluate the presence of dentinal defects after root canal preparation with hand instruments and two different reciprocating instruments. Sixty freshly extracted mandibular incisor teeth were selected for this in vitro study. On the basis of root length, mesiodistal and buccolingual dimensions, the teeth were allocated into three identical experimental groups (n = 15) and one control group (n = 15). The teeth in the control group were left unprepared. The other groups were: stainless steel hand instruments, WaveOne® Primary instruments and RECIPROC® R25 instruments. The reciprocating instruments were used with a reciprocating gentle in-and-out motion in a torque-limited electric motor at the appropriate preset mode. Horizontal sections were made 3, 6 and 9 mm from the apex. Samples were stained with methylene blue and viewed through a stereomicroscope. The presence of dentinal defects (fractures, incomplete cracks and craze lines) and their locations were investigated by two endodontists. These data were analysed statistically by Fisher's exact and chi-square tests. No defects were observed in the unprepared group. All instruments caused dentinal defects, with no significant differences between the instrument systems. All experimental groups demonstrated significantly more defects at the 3-mm level in comparison with the unprepared group (p = 0.032). At the other levels, there was no significant difference between the experimental groups and the control group. The use of hand or reciprocating instruments could induce the formation of dentinal defects during root canal preparation. PMID:26019654

  7. Difficulty assessment system of root canal treatment and research status of root canal filling materials%根管治疗难度评估系统及根管充填材料的研究现状

    Institute of Scientific and Technical Information of China (English)

    周艳勤; 钟晓波

    2012-01-01

    BACKGROUND: The choice of root canal filling materials can affect the quality of root canal filling. The quality of root canal filling is an important key factor that affects the long-term results of root canal treatment. OBJECTIVE: To review the difficulty assessment of root canal treatment and research status of root canal filling materials at home and abroad in recent years. METHODS: PubMed and VIP databases (1990/2011) were searched by the first author for papers concerning the risk factors for the difficulty of root canal treatment and the effect of root canal filling materials on the quality of root canal treatment. RESULTS AND CONCLUSION: Root canal treatment is the most effective method for pulpal and periapical diseases, but its effectiveness is affected by many factors. Therefore, it is necessary to have a difficulty assessment of root canal treatment before treatment. During the treatment, difficult root canal treatment requires advanced therapeutic instruments to lay a good foundation for root canal filling technology. Root canal filling is a key step of the treatment, and the filling result directly influences the effectiveness and the prognosis of root canal treatment. The imprecision of filling can cause microleakage, which can result in the treatment failure due to the root canal reinfection. Therefore, the success or failure of root canal treatment largely depends on the tight filling or not. At present, there is not a kind of root canal material that can completely seal the root canal system. It is needed to further improve the difficulty assessment system of root canal treatment and to study the ideal root canal filling materials in future research.%背景:根管充填材料的选择影响根管充填的质量,根管充填质量是影响根管治疗远期疗效的重要因素.目的:综述目前国内外根管治疗难度评估和根管材料的研究现状.方法:由第一作者检索1990/2011 PubMed 数据及维普中文科技期刊数据库

  8. Negative phototropism of rice root

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@It is often believed that the stem of higher plants has characteristics of positive phototropism, and the root shows no phototropism or no sensitivity to light though the root of Arabdopsis was reported possessing characteristics of negative phototropism. In this study, a distinct negative phototropism of the root system of rice seedlings was observed.

  9. Alterations of the Brain Reward System in Antipsychotic Naïve Schizophrenia Patients

    DEFF Research Database (Denmark)

    Nielsen, Mette Ødegaard; Rostrup, Egill; Wulff, Sanne;

    2012-01-01

    BACKGROUND: Various schizophrenic symptoms are suggested to be linked to a dysfunction of the brain reward system. Several studies have found alterations in the reward processing in patients with schizophrenia; however, most previous findings might be confounded by medication effects. METHODS...... arousing events) into behavioral salience (events where a predicted reward requires performance) and valence anticipation (the anticipation of a monetarily significant outcome). Furthermore, the evaluation of monetary gain and loss was assessed. RESULTS: During reward anticipation, patients had a...... and nonsignificant for value anticipation. Furthermore, patients showed a changed activation pattern during outcome evaluation in right prefrontal cortex. CONCLUSION: Our results suggest that changes during reward anticipation in schizophrenia are present from the beginning of the disease. This...

  10. CO2 enrichment increases carbon and nitrogen input from fine roots in a deciduous forest.

    Science.gov (United States)

    Iversen, Colleen M; Ledford, Joanne; Norby, Richard J

    2008-01-01

    * Greater fine-root production under elevated [CO2] may increase the input of carbon (C) and nitrogen (N) to the soil profile because fine root populations turn over quickly in forested ecosystems. * Here, the effect of elevated [CO)] was assessed on root biomass and N inputs at several soil depths by combining a long-term minirhizotron dataset with continuous, root-specific measurements of root mass and [N]. The experiment was conducted in a CO(2)-enriched sweetgum (Liquidambar styraciflua) plantation. * CO2) enrichment had no effect on root tissue density or [N] within a given diameter class. Root biomass production and standing crop were doubled under elevated [CO2]. Though fine-root turnover declined under elevated [CO2], fine-root mortality was also nearly doubled under CO2 enrichment. Over 9 yr, root mortality resulted in 681 g m(-2) of extra C and 9 g m(-2) of extra N input to the soil system under elevated [CO2]. At least half of these inputs were below 30 cm soil depth. * Increased C and N input to the soil under CO2 enrichment, especially below 30 cm depth, might alter soil C storage and N mineralization. Future research should focus on quantifying root decomposition dynamics and C and N mineralization deeper in the soil. PMID:18537885

  11. Methylphenidate alters basal ganglia neurotensin systems through dopaminergic mechanisms: a comparison with cocaine treatment.

    Science.gov (United States)

    Alburges, Mario E; Hoonakker, Amanda J; Horner, Kristen A; Fleckenstein, Annette E; Hanson, Glen R

    2011-05-01

    Methylphenidate (MPD) is a psychostimulant widely used to treat behavioral problems such as attention deficit hyperactivity disorder. MPD competitively inhibits the dopamine (DA) transporter. Previous studies demonstrated that stimulants of abuse, such as cocaine (COC) and methamphetamine differentially alter rat brain neurotensin (NT) systems through DA mechanisms. As NT is a neuropeptide primarily associated with the regulation of the nigrostriatal and mesolimbic DA systems, the effect of MPD on NT-like immunoreactivity (NTLI) content in several basal ganglia regions was assessed. MPD, at doses of 2.0 or 10.0 mg/kg, s.c., significantly increased the NTLI contents in dorsal striatum, substantia nigra and globus pallidus; similar increases in NTLI were observed in these areas after administration of COC (30.0 mg/kg, i.p.). No changes in NTLI occurred within the nucleus accumbens, frontal cortex and ventral tegmental area following MPD treatment. In addition, the NTLI changes in basal ganglia regions induced by MPD were prevented when D(1) (SCH 23390) or D(2) (eticlopride) receptor antagonists were coadministered with MPD. MPD treatment also increased dynorphin (DYN) levels in basal ganglia structures. These findings provide evidence that basal ganglia, but not limbic, NT systems are significantly affected by MPD through D(1) and D(2) receptor mechanisms, and these NTLI changes are similar, but not identical to those which occurred with COC administration. In addition, the MPD effects on NT systems are mechanistically distinct from the effects of methamphetamine. PMID:21323925

  12. Alterações na qualidade de raízes de mandioca(Manihot esculenta Crantz minimamente processadas Quality alterations in cassava roots (Manihot esculenta Crantz minimally processed

    Directory of Open Access Journals (Sweden)

    Andreia Alves

    2005-04-01

    Full Text Available A conservação pós-colheita das raízes de mandioca tem sido uma preocupação das indústrias e produtores, devido ao curto tempo de estocagem e a alta perecibilidade das raízes. Dois fenômenos são apontados como responsáveis pela deterioração das raízes, um de ordem fisiológica, provocando a perda inicial da qualidade por meio do desenvolvimento da descoloração vascular do tecido parenquimatoso, e o outro, de ordem microbiana, que se segue à fisiologia, responsável pela decomposição do produto. Dessa forma, com o presente trabalho, objetivou-se estudar a conservação das raízes de mandioca (Manihot esculenta Crantz, submetidas à higienização em água clorada e armazenadas em três tipos de embalagens, bandeja de isopor envolta em filme de policloreto de vinila (PVC, embalagem multicamada (poliéster Saram-13,5µ/polietileno-100µ com e sem vácuo e resfriadas (5 ± 0,5°C, mediante análises físico-químicas, microbiológicas, fisiológicas e sensoriais. A conservação de mandioca minimamente processada sob refrigeração para os tratamentos realizados, é possível diferenciando-se o período de armazenamento, sendo que para as amostras armazenadas em bandeja, o período de armazenamento foi de 7 dias, no selado e a vácuo foi de aproximadamente 24 dias, respectivamente.Post harvest of cassava roots has been a great concern in food industries and producers due to the short shelf life and high perishability. Several phenomena have been pointed out as responsible for root deterioration. Among them there are physiological aspects, that lead to losses in initial quality through vascular discoloration of parenchymatous tissue. On the other hand, phenomena from microbial origin, which follow the physiological alterations, are responsible for product decomposition. In this context, this work was aimed at investigating the conservation of cassava roots (Manihot esculenta Crantz submitted to chlorinated water, and stored using

  13. Analysis of effects of a new environmental pollutant, bisphenol A, on antioxidant systems in soybean roots at different growth stages

    Science.gov (United States)

    Zhang, Jiazhi; Li, Xingyi; Zhou, Li; Wang, Lihong; Zhou, Qing; Huang, Xiaohua

    2016-03-01

    Bisphenol A (BPA) is an important industrial raw material. Because of its widespread use and increasing release into environment, BPA has become a new environmental pollutant. Previous studies about BPA’s effects in plants focus on a certain growth stage. However, the plant’s response to pollutants varies at different growth stages. Therefore, in this work, BPA’s effects in soybean roots at different growth stages were investigated by determining the reactive oxygen species levels, membrane lipid fatty acid composition, membrane lipid peroxidation, and antioxidant systems. The results showed that low-dose BPA exposure slightly caused membrane lipid peroxidation but didn’t activate antioxidant systems at the seedling stage, and this exposure did not affect above process at other growth stages; high-dose BPA increased reactive oxygen species levels and then caused membrane lipid peroxidation at all growth stages although it activated antioxidant systems, and these effects were weaker with prolonging the growth stages. The recovery degree after withdrawal of BPA exposure was negatively related to BPA dose, but was positively related to growth stage. Taken together, the effects of BPA on antioxidant systems in soybean roots were associated with BPA exposure dose and soybean growth stage.

  14. Comparative dynamics of tea (Camellia sinensis L.) roots under organic and conventional management systems with special reference to water use

    OpenAIRE

    Mohotti, Dr (Mrs) A. J; Damayanthi, Mrs N; Anandacoomaraswamy, Dr A; Mohotti, Dr K. M

    2008-01-01

    Comparative measurements were carried out in the on-going, long-term organic and conventional comparison “TRI OR-CON” trial at the Tea Research Institute of Sri Lanka. The tea was grown organically using tea waste (TW), neem oil cake (NOC), compost (COM) as soil amendments using IFOAM guidelines, which were compared with tea grown conventionally (CONV) with recommended synthetic inputs. Responses of the tea yield, root system and mass volume sap flow were studied. The tea bushes showed com...

  15. A multi-tiered data structure and process management system based on ROOT and CouchDB

    International Nuclear Information System (INIS)

    A multi-tiered data structure, analysis toolkit and data processing management system has been constructed using ROOT and CouchDB. This system is well suited for experiments that acquire many computer files of raw data over the course of months or years, that are distributed to different computing centers and further reduced in size by several steps of data processing. Data handling for experiments searching for rare events extracted from digitized pulse traces typically fit this description. An implementation of this system has been constructed for the EDELWEISS-III experiment and is described here in some detail. This solution may also serve as a prototype system for the proposed EURECA experiment.

  16. A multi-tiered data structure and process management system based on ROOT and CouchDB

    Science.gov (United States)

    Cox, G. A.; Armengaud, E.; Augier, C.; Benoît, A.; Bergé, L.; Bergmann, T.; Blümer, J.; Bres, G.; Broniatowski, A.; Brudanin, V.; Censier, B.; Chapellier, M.; Chardin, G.; Charlieux, F.; Collin, S.; Coulter, P.; Crauste, O.; De Jésus, M.; Domange, J.; Dumoulin, L.; Eitel, K.; Filosofov, D.; Fourches, N.; Gascon, J.; Gerbier, G.; Gironnet, J.; Gros, M.; Henry, S.; Hervé, S.; Jokisch, S.; Juillard, A.; Kleifges, M.; Kluck, H.; Kozlov, V.; Kraus, H.; Kudryavtsev, V. A.; Loaiza, P.; Marnieros, S.; Menshikov, A.; Navick, X.-F.; Nones, C.; Olivieri, E.; Pari, P.; Pattavina, L.; Paul, B.; Robinson, M.; Rodenas, H.; Rozov, S.; Sanglard, V.; Schmidt, B.; Semikh, S.; Tcherniakhovski, D.; Torrento-Coello, A. S.; Unrau, M.; Vagneron, L.; Verdier, M.-A.; Walker, R. J.; Weber, M.; Yakushev, E.; Zhang, X.

    2012-08-01

    A multi-tiered data structure, analysis toolkit and data processing management system has been constructed using ROOT and CouchDB. This system is well suited for experiments that acquire many computer files of raw data over the course of months or years, that are distributed to different computing centers and further reduced in size by several steps of data processing. Data handling for experiments searching for rare events extracted from digitized pulse traces typically fit this description. An implementation of this system has been constructed for the EDELWEISS-III experiment and is described here in some detail. This solution may also serve as a prototype system for the proposed EURECA experiment.

  17. Mechanisms of alteration of the immune system by ionizing radiations: a basis for radiation protection

    Energy Technology Data Exchange (ETDEWEB)

    Bourguignon, M. [Direction Generale de la Surete Nucleaire et de la Radioprotection, 75 - Paris (France); Perez, M.; Dubner, D.; Michelin, S. [Autoridad Regulatoria Nuclear, Buenos Aires (Argentina); Carosella, E. [CEA, Service de Recherches en Hemato -Immunologie, 75 - Paris (France)

    2006-07-01

    Full text of publication follows: Alterations of the immune system appear in relationship with exposure to ionizing radiation (IR) in different situations, e.g., accidents, radiation therapy of cancer, prenatal irradiation, some human diseases with hypersensitivity to IR and aging. Thus, the comprehension of the mechanisms of the alterations of the immune system by IR is necessary to elaborate strategies of protection and to pave the way for future possible therapies. At least 9 mechanisms of alterations can be identified: 1- Apoptosis. Apoptosis is a key mechanism of the natural regulation of the immune system and plays also a key role in the response to IR: lymphocytes die rapidly by apoptosis after exposure. Different pathways of induction of apoptosis have been identified, and include p53 dependent and mitochondria mediated pathways, as well as CD95 and ROS initiation; 2- TCR mutations. The T cell antigen receptor is responsible to discriminate between self and non self. Mutations of the TCR may result from exposure to IR; 3- Modification of the Th1-Th2 balance. T helper cells may express 2 distinct secretion patterns: Th1 cytokines promote cell-mediated immunity while Th2 cytokines favor humoral immunity. Although the effects of IR on the Th1/Th2 balance remains controversial, an imbalance towards a Th2 profile is likely and patients with cancer and systemic auto-immune disease often present a switch from Th1 to Th2; 4- Bystander effects and genetic instability. Stimulatory effect or genomic instability have been observed in haematopoietic cells exposed to IR and related to a bystander mechanism. 5- Shift toward an inflammatory profile. Ionizing radiation may induce a persistent inflammatory profile as a result of dis-regulation of cytokine production; such a status of persistent inflammation has been observed in Hiroshima and Nagasaki survivors. 6- Modification of antigen presentation. Antigen presentation by dendritic cells is an essential function preceding

  18. Mechanisms of alteration of the immune system by ionizing radiations: a basis for radiation protection

    International Nuclear Information System (INIS)

    Full text of publication follows: Alterations of the immune system appear in relationship with exposure to ionizing radiation (IR) in different situations, e.g., accidents, radiation therapy of cancer, prenatal irradiation, some human diseases with hypersensitivity to IR and aging. Thus, the comprehension of the mechanisms of the alterations of the immune system by IR is necessary to elaborate strategies of protection and to pave the way for future possible therapies. At least 9 mechanisms of alterations can be identified: 1- Apoptosis. Apoptosis is a key mechanism of the natural regulation of the immune system and plays also a key role in the response to IR: lymphocytes die rapidly by apoptosis after exposure. Different pathways of induction of apoptosis have been identified, and include p53 dependent and mitochondria mediated pathways, as well as CD95 and ROS initiation; 2- TCR mutations. The T cell antigen receptor is responsible to discriminate between self and non self. Mutations of the TCR may result from exposure to IR; 3- Modification of the Th1-Th2 balance. T helper cells may express 2 distinct secretion patterns: Th1 cytokines promote cell-mediated immunity while Th2 cytokines favor humoral immunity. Although the effects of IR on the Th1/Th2 balance remains controversial, an imbalance towards a Th2 profile is likely and patients with cancer and systemic auto-immune disease often present a switch from Th1 to Th2; 4- Bystander effects and genetic instability. Stimulatory effect or genomic instability have been observed in haematopoietic cells exposed to IR and related to a bystander mechanism. 5- Shift toward an inflammatory profile. Ionizing radiation may induce a persistent inflammatory profile as a result of dis-regulation of cytokine production; such a status of persistent inflammation has been observed in Hiroshima and Nagasaki survivors. 6- Modification of antigen presentation. Antigen presentation by dendritic cells is an essential function preceding

  19. Systemic Sclerosis Patients Present Alterations in the Expression of Molecules Involved in B-Cell Regulation

    Science.gov (United States)

    Soto, Lilian; Ferrier, Ashley; Aravena, Octavio; Fonseca, Elianet; Berendsen, Jorge; Biere, Andrea; Bueno, Daniel; Ramos, Verónica; Aguillón, Juan Carlos; Catalán, Diego

    2015-01-01

    The activation threshold of B cells is tightly regulated by an array of inhibitory and activator receptors in such a way that disturbances in their expression can lead to the appearance of autoimmunity. The aim of this study was to evaluate the expression of activating and inhibitory molecules involved in the modulation of B cell functions in transitional, naive, and memory B-cell subpopulations from systemic sclerosis patients. To achieve this, blood samples were drawn from 31 systemic sclerosis patients and 53 healthy individuals. Surface expression of CD86, MHC II, CD19, CD21, CD40, CD22, Siglec 10, CD35, and FcγRIIB was determined by flow cytometry. IL-10 production was evaluated by intracellular flow cytometry from isolated B cells. Soluble IL-6 and IL-10 levels were measured by ELISA from supernatants of stimulated B cells. Systemic sclerosis patients exhibit an increased frequency of transitional and naive B cells related to memory B cells compared with healthy controls. Transitional and naive B cells from patients express higher levels of CD86 and FcγRIIB than healthy donors. Also, B cells from patients show high expression of CD19 and CD40, whereas memory cells from systemic sclerosis patients show reduced expression of CD35. CD19 and CD35 expression levels associate with different autoantibody profiles. IL-10+ B cells and secreted levels of IL-10 were markedly reduced in patients. In conclusion, systemic sclerosis patients show alterations in the expression of molecules involved in B-cell regulation. These abnormalities may be determinant in the B-cell hyperactivation observed in systemic sclerosis. PMID:26483788

  20. In vitro comparison rate of dental root canal transportation using two single file systems on the simulated resin blocks

    Directory of Open Access Journals (Sweden)

    Mohammad Javad Etesami

    2016-07-01

    Full Text Available Background and Aims: Cleaning and shaping is one of the most important stages in endodontic treatment. Single-file systems save time and reduce the risk of transmission of pathogens. This in vitro study was aimed to compare the rate of canal transportation after the preparation of the stimulated resin root canal with two single-file systems, namely Waveone and Reciproc. Materials and Methods: Thirty stimulated resin root canal blocks with size 8/0. 02 K file were randomly divided into two study groups. The preparation in Group A and Group B was performed using Reciproc and Waveone files, respectively. Pre and post- preparation photographs were taken and the images were superimposed to evaluate the inner and outer wall’s curvature tendency at three points (apical, middle and coronal using AutoCad pragram. Data were analyzed using T-test. Results: Based on the results, the degree of transportation in the inner and outer walls of the canal was less at the level of 3 millimeters (P0.05. Conclusion: Waveone showed better performance in the middle third of canal and this system maybe recommended.

  1. Adrenalectomy alters the sensitivity of the central nervous system melanocortin system

    OpenAIRE

    Drazen, DL; Wortman, MD; Schwartz, MW; Clegg, DJ; Van Dijk, G.; Woods, SC; Seeley, RJ; Drazen, Deborah L.; Wortman, Matthew D.; Schwartz, Michael W.; Woods, Stephen C.; Seeley, Randy J.

    2003-01-01

    Removal of adrenal steroids by adrenalectomy (ADX) reduces food intake and body weight in rodents and prevents excessive weight gain in many genetic and dietary models of obesity. Thus, glucocorticoids appear to play a key role to promote positive energy balance in normal and pathological conditions. By comparison, central nervous system melanocortin signaling provides critical inhibitory tone to regulate energy balance. The present experiments sought to test whether glucocorticoids influence...

  2. Alternative rooting induction of semi-hardwood olive cuttings by several auxin-producing bacteria for organic agriculture systems

    Directory of Open Access Journals (Sweden)

    M. C. Montero-Calasanz

    2013-01-01

    Full Text Available Southern Spain is the largest olive oil producer region in the world. In recent years organic agriculture systems have grown exponentially so that new alternative systems to produce organic olive cuttings are needed. Several bacterial isolates, namely Pantoea sp. AG9, Chryseobacterium sp. AG13, Chryseobacterium sp. CT348, Pseudomonas sp. CT364 and Azospirillum brasilense Cd (ATCC 29729, have been used to induce rooting in olive semi-hardwood cuttings of Arbequina, Hojiblanca and Picual cultivars of olive (Olea europea L. The first four strains were previously selected as auxin-producing bacteria and by their ability to promote rooting in model plants. They have been classified on the basis of their 16S rDNA gene sequence. The known auxin producer A. brasilense Cd strain has been used as a reference. The inoculation of olive cuttings was performed in two different ways: (i by dipping cuttings in a liquid bacterial culture or (ii by immersing them in a paste made of solid bacterial inoculant and sterile water. Under nursery conditions all of the tested bacterial strains were able to induce the rooting of olive cuttings to a similar or greater extent than the control cuttings treated with indole-3-butyric acid (IBA. The olive cultivars responded differently depending on the bacterial strain and the inoculation method. The strain that consistently gave the best results was Pantoea sp. AG9, the only one of the tested bacterial strains to express the enzyme 1-aminocyclopropane-1-carboxylate (ACC deaminase. The results are also discussed in terms of potential commercial interest and nursery feasibility performance of these strains.

  3. Specific expression of DR5 promoter in rice roots using a tCUP derived promoter-reporter system.

    Directory of Open Access Journals (Sweden)

    Jie Zhou

    Full Text Available Variation of transgene expression caused by either position effect at the insertion site or the promoter/enhancer elements employed for the expression of selectable marker genes has complicated phenotype characterization and caused misinterpretation. We have developed a reporter system in rice to analyze the influence of vector configuration, spacer and selectable marker gene promoter on the expression of the promoterless GUS reporter and DR5 promoter. Our results indicate that a spacer inserted between the reversed 35S promoter and the GUS reporter could reduce leaky expression of the reporter but was unable to block the nonspecific expression of DR5::GUS. Stacking the selectable marker unit in head to tail with the GUS reporter aided the gene specific expression of the GUS reporter under the DR5 promoter even when the 35S promoter is used for expression of the selectable marker. Compared to 35S under this configuration, a quick and distinctive expression of DR5::GUS was observed in the root cap, quiescent center and xylem cells in the root apical meristem by using the tCUP derived promoter (tCUP1 for selection, that is similar to the pattern obtained by a sensitive DR5 variant (DR5rev in Arabidopsis. These data suggest a conserved property of the tCUP promoter in preventing enhancer-promoter interactions in rice as it does in Arabidopsis, and also demonstrate that an analogous distal auxin maximum exists in roots of rice. Therefore, the tCUP promoter based selection system provides a new strategy for specific expression of transgenes in rice.

  4. 32 CFR Appendix C to Part 323 - Instructions for Preparation of Reports to New or Altered Systems

    Science.gov (United States)

    2010-07-01

    ... the existing DLA procedural or exemption rules (32 CFR part 323) are required for this proposed system... 32 National Defense 2 2010-07-01 2010-07-01 false Instructions for Preparation of Reports to New... The report on a new or altered system will consist of a transmittal letter, a narrative statement,...

  5. Altered time structure of neuro-endocrine-immune system function in lung cancer patients

    Directory of Open Access Journals (Sweden)

    Carughi Stefano

    2010-06-01

    TcS1 was decreased in cancer patients. The melatonin/cortisol mean nocturnal level ratio was decreased in cancer patients. Conclusion The altered secretion and loss of circadian rhythmicity of many studied factors observed in the subjects suffering from neoplastic disease may be expression of gradual alteration of the integrated function of the neuro-immune-endocrine system

  6. Physicochemical and biological properties of a novel injectable polyurethane system for root canal filling

    Directory of Open Access Journals (Sweden)

    Wang J

    2015-01-01

    Full Text Available Jian Wang,1 Yi Zuo,1 Minghui Zhao,1 Jiaxing Jiang,1 Yi Man,2 Jun Wu,3 Yunjiu Hu,3 Changlei Liu,4 Yubao Li,1 Jidong Li11Research Center for Nano-Biomaterials, Analytical and Testing Center, Sichuan University, Chengdu, Sichuan, People’s Republic of China; 2College of Stomatology, Sichuan University, Chengdu, Sichuan, People’s Republic of China; 3Department of Orthopedics, Chongqing Medical University, Chongqing, People’s Republic of China; 4College of Chemistry, Sichuan University, Chengdu, Sichuan, People’s Republic of ChinaAbstract: A root canal sealer with antibacterial activity can be efficacious in preventing reinfection that results from residual microorganisms and/or the leakage of microorganisms. In the present study, a series of injectable, self-curing polyurethane (PU-based antibacterial sealers with different concentrations of silver phosphate (Ag3PO4 were fabricated. Subsequently, their physicochemical properties, antibacterial abilities, and preliminary cytocompatibilities were evaluated. The results indicated that the fabricated PU-based sealers can achieve a high conversion rate in a short amount of time. More than 95% of the isocyanate group of PU sealers with 3 wt% (PU3 and 5 wt% (PU5 concentrations of Ag3PO4 were included in the curing reaction after 7 hours. With the exception of those for film thickness for PU5, the results of setting time, film thickness, and solubility were able to meet the requirements of the International Organization for Standardization. The antibacterial tests showed that PU3 and PU5 exhibit stronger antimicrobial effects than that achieved with 1 wt% Ag3PO4 (PU1 and AH Plus (positive control against Streptococcus mutans. The cytocompatibility evaluation revealed that the PU1 and PU3 sealers possess good cytocompatibility and low cytotoxicity. These results demonstrate that the PU3 sealer offers good physicochemical and antimicrobial properties along with cytocompatibility, which may hold great

  7. Structural alterations in the male reproductive system of the freshwater crayfish, Cherax quadricarinatus (Decapoda, Parastacidae).

    Science.gov (United States)

    Bugnot, Ana B; López Greco, Laura S

    2009-10-01

    No diseases affecting reproductive performance have been previously reported in freshwater crayfishes. This study aims to characterise one reproductive system abnormality found in males of Cherax quadricarinatus reared in captivity. Fifteen adult males of C. quadricarinatus (70-110 g) were purchased from San Mateo S.A. farm (Entre Ríos, Argentina) each season during 2007. Macroscopic analysis showed that 26.6% of the animals sacrificed in winter presented brownish distal vasa deferentia. Histological analysis showed different levels of structural abnormality in the epithelium of the vasa deferentia and spermatophore. Granular and hyaline haemocytes were identified within the vasa deferentia but no significant differences were found in the sperm count between normal and brownish vas deferens. Histological analysis of the crayfishes sacrificed in autumn also showed these modifications in 22% of the animals, however, they did not show the brownish colour under macroscopic analysis. The similarities between the male reproductive system syndrome in shrimps and the abnormalities found in C. quadricarinatus are notable. An unspecific response to thermic stress is a possible explanation of these structural alterations. PMID:19682455

  8. Altered sucrose synthase and invertase expression affects the local and systemic sugar metabolism of nematode-infected Arabidopsis thaliana plants

    OpenAIRE

    Cabello, Susana; Lorenz, Cindy; Crespo, Sara; Cabrera, Javier; Ludwig, Roland; Escobar, Carolina; Hofmann, Julia

    2013-01-01

    Sedentary endoparasitic nematodes of plants induce highly specific feeding cells in the root central cylinder. From these, the obligate parasites withdraw all required nutrients. The feeding cells were described as sink tissues in the plant’s circulation system that are supplied with phloem-derived solutes such as sugars. Currently, there are several publications describing mechanisms of sugar import into the feeding cells. However, sugar processing has not been studied so far. Thus, in the p...

  9. Investigation of Lab Fire Prevention Management System of Combining Root Cause Analysis and Analytic Hierarchy Process with Event Tree Analysis

    Directory of Open Access Journals (Sweden)

    Cheng-Chan Shih

    2016-01-01

    Full Text Available This paper proposed a new approach, combining root cause analysis (RCA, analytic hierarchy process (AHP, and event tree analysis (ETA in a loop to systematically evaluate various laboratory safety prevention strategies. First, 139 fire accidents were reviewed to identify the root causes and draw out prevention strategies. Most fires were caused due to runaway reactions, operation error and equipment failure, and flammable material release. These mostly occurred in working places of no prompt fire protection. We also used AHP to evaluate the priority of these strategies and found that chemical fire prevention strategy is the most important control element, and strengthening maintenance and safety inspection intensity is the most important action. Also together with our surveys results, we proposed that equipment design is also critical for fire prevention. Therefore a technical improvement was propounded: installing fire detector, automatic sprinkler, and manual extinguisher in the lab hood as proactive fire protections. ETA was then used as a tool to evaluate laboratory fire risks. The results indicated that the total risk of a fire occurring decreases from 0.0351 to 0.0042 without/with equipment taking actions. Establishing such system can make Environment, Health and Safety (EH&S office not only analyze and prioritize fire prevention policies more practically, but also demonstrate how effective protective equipment improvement can achieve and the probabilities of the initiating event developing into a serious accident or controlled by the existing safety system.

  10. Root systems from Toric Calabi-Yau Geometry. Towards new algebraic structures and symmetries in physics?

    CERN Document Server

    Torrente-Lujan, E

    2004-01-01

    The algebraic approach to the construction of the reflexive polyhedra that yield Calabi-Yau spaces in three or more complex dimensions with K3 fibres reveals graphs that include and generalize the Dynkin diagrams associated with gauge symmetries. In this work we continue to study the structure of graphs obtained from $CY_3$ reflexive polyhedra. We show how some particularly defined integral matrices can be assigned to these diagrams. This family of matrices and its associated graphs may be obtained by relaxing the restrictions on the individual entries of the generalized Cartan matrices associated with the Dynkin diagrams that characterize Cartan-Lie and affine Kac-Moody algebras. These graphs keep however the affine structure, as it was in Kac-Moody Dynkin diagrams. We presented a possible root structure for some simple cases. We conjecture that these generalized graphs and associated link matrices may characterize generalizations of these algebras.

  11. Systemic Control of Cell Division and Endoreduplication by NAA and BAP by Modulating CDKs in Root Tip Cells of Allium cepa

    Directory of Open Access Journals (Sweden)

    Jigna G. Tank

    2014-01-01

    Full Text Available Molecular mechanism regulated by auxin and cytokinin during endoreduplication, cell division, and elongation process is studied by using Allium cepa roots as a model system. The activity of CDK genes modulated by auxin and cytokinin during cell division, elongation, and endoreduplication process is explained in this research work. To study the significance of auxin and cytokinin in the management of cell division and endoreduplication process in plant meristematic cells at molecular level endoreduplication was developed in root tips of Allium cepa by giving colchicine treatment. There were inhibition of vegetative growth, formation of c-tumor at root tip, and development of endoreduplicated cells after colchicine treatment. This c-tumor was further treated with NAA and BAP to reinitiate vegetative growth in roots. BAP gave positive response in reinitiation of vegetative growth of roots from center of c-tumor. However, NAA gave negative response in reinitiation of vegetative growth of roots from c-tumor. Further, CDKs gene expression analysis from normal, endoreduplicated, and phytohormone (NAA or BAP treated root tip was done and remarkable changes in transcription level of CDK genes in normal, endoreduplicated, and phytohormones treated cells were observed.

  12. Effect of nutrient spray interval and light quality in root zone on growth characteristics of Anthurium andreanum L. in aeroponic system

    Directory of Open Access Journals (Sweden)

    M. Kafi

    2013-03-01

    Full Text Available In order to determine the most appropriate nutrient solution spraying interval and effects of light quality in the root zone on anthurium in aeroponic system, a split plot experiment, with completely randomized design, was carried out in a greenhouse located in the city of Karaj, Iran. In this study, time between the sprays was the main plot and consisted of two levels (2 minutes spray and 30 minutes without spray, and 2 minutes spray and 45 minutes without spray and color of the containers was the sub plot at three levels (black, blue and red. Results showed that 2 minutes spay and 45 minutes without spay increased number of leaves and shoot fresh weight much higher than 2 minutes spray and 30 minutes without spray. Study of light quality in the root zone showed that black color of the containers, by increasing total leaf area and shoot dry and fresh weight, was the best color treatment. Blue color in the root zone had the most influence on final root length; but was not able to increase root dry and fresh weight, because of higher number of roots in other color treatments. In general, spraying nutrient solution for two minutes, and 45 minutes without spray, along with black color containers in the root zone was the best treatment for most growth characteristics of the anthurium plant.

  13. Microgravity-induced alterations in signal transduction in cells of the immune system

    Science.gov (United States)

    Paulsen, Katrin; Thiel, Cora; Timm, Johanna; Schmidt, Peter M.; Huber, Kathrin; Tauber, Svantje; Hemmersbach, Ruth; Seibt, Dieter; Kroll, Hartmut; Grote, Karl-Heinrich; Zipp, Frauke; Schneider-Stock, Regine; Cogoli, Augusto; Hilliger, Andre; Engelmann, Frank; Ullrich, Oliver

    2010-11-01

    Since decades it is known that the activity of cells of the immune system is severely dysregulated in microgravity, however, the underlying molecular aspects have not been elucidated yet. The identification of gravity-sensitive molecular mechanisms in cells of the immune system is an important and indispensable prerequisite for the development of counteractive measures to prevent or treat disturbed immune cell function of astronauts during long-term space missions. Moreover, their sensitivity to altered gravity renders immune cells an ideal model system to understand if and how gravity on Earth is required for normal mammalian cell function and signal transduction. We investigated the effect of simulated weightlessness (2D clinostat) and of real microgravity (parabolic flights) on key signal pathways in a human monocytic and a T lymphocyte cell line. We found that cellular responses to microgravity strongly depend on the cell-type and the conditions in which the cells are subjected to microgravity. In Jurkat T cells, enhanced phosphorylation of the MAP kinases ERK-1/2, MEK and p38 and inhibition of nuclear translocation of NF-kB were the predominant responses to simulated weightlessness, in either stimulated or non-stimulated cells. In contrast, non-stimulated monocytic U937 cells responded to simulated weightlessness with enhanced overall tyrosine-phosphorylation and activation of c-jun, whereas PMA-stimulated U937 cells responded the opposite way with reduced tyrosine-phosphorylation and reduced activation of c-jun, compared with PMA-stimulated 1 g controls. P53 protein was phosphorylated rapidly in microgravity. The identification of gravi-sensitive mechanisms in cells of the immune system will not only enable us to understand and prevent the negative effects of long time exposure to microgravity on Astronauts, but could also lead to novel therapeutic targets in general.

  14. Root Responses to Boron Deficiency Mediated by Ethylene.

    Science.gov (United States)

    González-Fontes, Agustín; Herrera-Rodríguez, M B; Martín-Rejano, Esperanza M; Navarro-Gochicoa, M T; Rexach, Jesús; Camacho-Cristóbal, Juan J

    2015-01-01

    Low boron (B) supply alters the architecture of the root system in Arabidopsis thaliana seedlings, leading to a reduction in the primary root growth and an increase in the length and number of root hairs. At short-term (hours), B deficiency causes a decrease in the cell elongation of the primary root, resulting in a lower growth. Experimental approaches using ethylene insensitive Arabidopsis mutants, inhibitors of ethylene response, and GUS reporter lines suggest that ethylene is involved in these responses of the primary root to B deficiency. Furthermore, it has been shown that auxin participates in the inhibition of cell elongation under short-term B deprivation. These results support that an interaction between ethylene and auxin plays an important role in controlling the primary root elongation, in which a number of genes related to the synthesis, transport, and signaling of both phytohormones could modulate this effect. Evidence for a root cross-talk among both hormones and other possible intermediates (abscisic acid, calcium sensors, and reactive oxygen species) in response to B deficiency is provided and discussed. PMID:26779202

  15. Sistema radicular do fórmio, sisal e bambu imperial Root systems of new zealand flax, sisal, and imperial bamboo

    Directory of Open Access Journals (Sweden)

    Júlio César Medina

    1963-01-01

    Full Text Available Os autores apresentam e discutem os resultados de estudos preliminares sôbre o sistema radicular do fórmio (Phormium tenax Forster, sisal (Agave sisalana Perrine e bambu .imperial (Bambusa vulgaris Schrad. var. vittata A. ,& C, Riv.. Concluem, que o sistema radicular do fórmio é relativamente raso, o do sisal bastante superficial é o do bambu imperial se limitada às primeiras carnadas do solo.Results of preliminary studies on root-systems of New Zealand flax (Phormium tenax Forster, sisal (Agave sisalana Perrine, and imperial bamboo (Bambusa vulgaris Schrad. var. vittata A. & C. Riv. plants by the method of soil block, are apresented and discussed by the authors. According to local soil conditions, it is concluded that the root-system of New Zealand flax is relatively superficial, with the main concentration of roots in the 12 in. soil top layer. In sisal, the root-systems of the three plants investigated were found to occur in the soil surface layer, with more of 90% of the roots in the top 6 in. Finally, in the imperial bamboo clump atudied, the main concentration of roots was found in the layer 6-12 in. deep.

  16. Root canal retained restorations: 3. Root-face attachments.

    Science.gov (United States)

    Dummer, P M; Edmunds, D H; Gidden, J R

    1990-10-01

    It has been common practice for many years to use retained roots to provide support and stability for partial or full dentures. The retention of such overdentures is greatly enhanced if the remaining roots are modified and restored with posts and root-face attachments. The final article in this series on root canal retained restorations classifies and describes some of the root-face attachments currently available, and also describes a number of prefabricated post systems with integral overdenture attachments. Guidelines for clinical and laboratory procedures are given. PMID:2097234

  17. Root resorption

    DEFF Research Database (Denmark)

    Kjaer, Inger

    2014-01-01

    Introduction: This paper summarizes the different conditions, which have a well-known influence on the resorption of tooth roots, exemplified by trauma and orthodontic treatment. The concept of the paper is to summarize and explain symptoms and signs of importance for avoiding resorption during...... orthodontic treatment. The Hypothesis: The hypothesis in this paper is that three different tissue layers covering the root in the so-called periroot sheet can explain signs and symptoms of importance for avoiding root resorption during orthodontic treatment. These different tissue layers are; outermost......-an ectodermal tissue layer (Malassez′s epithelium), a middle layer-composed by the collagen-mesodermal tissue layer, and an innermost root-close innervation layer. Abnormalities in one of these tissue layers are thought to cause inflammatory processes in the periodontal membrane comparable to inflammatory...

  18. High conversion self-curing sealer based on a novel injectable polyurethane system for root canal filling

    Energy Technology Data Exchange (ETDEWEB)

    Sun, Bin [Research Center for Nano-Biomaterials, Analytical and Testing Center, Sichuan University, Chengdu 610064 (China); Zuo, Yi, E-mail: zoae@scu.edu.cn [Research Center for Nano-Biomaterials, Analytical and Testing Center, Sichuan University, Chengdu 610064 (China); Li, Jidong; Wang, Li [Research Center for Nano-Biomaterials, Analytical and Testing Center, Sichuan University, Chengdu 610064 (China); Tang, Kuangyun [The State Key Laboratory of Oral Diseases and Orthognathic Surgery, Sichuan University West China College of Stomatology, Chengdu 610064 (China); Huang, Di; Du, Jingjing; Luo, Peipei; Li, Yubao [Research Center for Nano-Biomaterials, Analytical and Testing Center, Sichuan University, Chengdu 610064 (China)

    2013-08-01

    Low monomer–polymer conversion is the key factor leading to cytotoxicity for resin-containing restorative materials. This paper provides a new root canal filling system based on self-curing injectable polyurethane which can achieve high conversion in a short time. Traced FTIR spectra show more than 90% NCO group participated in the curing reaction after 4 h, and only about 5% remained after 24 h. The calculated data also testified the curing process supports a third-order reaction, and this efficient and sufficient reaction is postulated to weaken the toxic stimulation. By culturing with L929 murine fibroblasts, the PU sealer is shown to be favorable for cell attachment and proliferation. Then physicochemical properties of the injectable PU-based sealer were evaluated according to the Standard [ISO 6876:2001 (E)] for clinical application. A series of physicochemical properties of PU sealer have been tested comparing with AH Plus and Apexit Plus. And the results present that the self-curing PU sealer could not only match the clinic requirements, but even has better properties than the other two commercial sealers. We expect the high conversion PU sealer has a tremendous potential in the field of root canal filling after further biological evaluation. - Highlights: • A new root canal sealer based on self-curing injectable polyurethane was provided. • More than 90% NCO group reacted after 4h, and only about 5% remained after 24 h. • By culturing with L929 murine fibroblasts, the PU sealer showed perfect cytocompatibility. • Volumetric dilatancy after curing will make the sealer achieve a tight seal.

  19. Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks

    Science.gov (United States)

    Damiani, Isabelle; Drain, Alice; Guichard, Marjorie; Balzergue, Sandrine; Boscari, Alexandre; Boyer, Jean-Christophe; Brunaud, Véronique; Cottaz, Sylvain; Rancurel, Corinne; Da Rocha, Martine; Fizames, Cécile; Fort, Sébastien; Gaillard, Isabelle; Maillol, Vincent; Danchin, Etienne G. J.; Rouached, Hatem; Samain, Eric; Su, Yan-Hua; Thouin, Julien; Touraine, Bruno; Puppo, Alain; Frachisse, Jean-Marie; Pauly, Nicolas; Sentenac, Hervé

    2016-01-01

    Root hairs are involved in water and nutrient uptake, and thereby in plant autotrophy. In legumes, they also play a crucial role in establishment of rhizobial symbiosis. To obtain a holistic view of Medicago truncatula genes expressed in root hairs and of their regulation during the first hours of the engagement in rhizobial symbiotic interaction, a high throughput RNA sequencing on isolated root hairs from roots challenged or not with lipochitooligosaccharides Nod factors (NF) for 4 or 20 h was carried out. This provided a repertoire of genes displaying expression in root hairs, responding or not to NF, and specific or not to legumes. In analyzing the transcriptome dataset, special attention was paid to pumps, transporters, or channels active at the plasma membrane, to other proteins likely to play a role in nutrient ion uptake, NF electrical and calcium signaling, control of the redox status or the dynamic reprogramming of root hair transcriptome induced by NF treatment, and to the identification of papilionoid legume-specific genes expressed in root hairs. About 10% of the root hair expressed genes were significantly up- or down-regulated by NF treatment, suggesting their involvement in remodeling plant functions to allow establishment of the symbiotic relationship. For instance, NF-induced changes in expression of genes encoding plasma membrane transport systems or disease response proteins indicate that root hairs reduce their involvement in nutrient ion absorption and adapt their immune system in order to engage in the symbiotic interaction. It also appears that the redox status of root hair cells is tuned in response to NF perception. In addition, 1176 genes that could be considered as “papilionoid legume-specific” were identified in the M. truncatula root hair transcriptome, from which 141 were found to possess an ortholog in every of the six legume genomes that we considered, suggesting their involvement in essential functions specific to legumes. This

  20. Nod factor effects on root hair-specific transcriptome of Medicago truncatula: focus on plasma membrane transport systems and reactive oxygen species networks

    Directory of Open Access Journals (Sweden)

    Isabelle eDAMIANI

    2016-06-01

    Full Text Available Root hairs are involved in water and nutrient uptake, and thereby in plant autotrophy. In legumes, they also play a crucial role in establishment of rhizobial symbiosis. To obtain a holistic view of Medicago truncatula genes expressed in root hairs and of their regulation during the first hours of the engagement in rhizobial symbiotic interaction, a high throughput RNA sequencing on isolated root hairs from roots challenged or not with lipochitooligosaccharides Nod factors (NF for 4 h or 20 h was carried out. This provided a repertoire of genes displaying expression in root hairs, responding or not to NF and specific or not to legumes. In analyzing the transcriptome dataset, special attention was paid to pumps, transporters or channels active at the plasma membrane, to other proteins likely to play a role in nutrient ion uptake, NF electrical and calcium signaling, control of the redox status or the dynamic reprogramming of root hair transcriptome induced by NF treatment, and to the identification of papilionoid legume-specific genes expressed in root hairs. About 10 percent of the root hair expressed genes were significantly up- or down-regulated by NF treatment, suggesting their involvement in remodeling plant functions to allow establishment of the symbiotic relationship. For instance, NF-induced changes in expression of genes encoding plasma membrane transport systems or disease response proteins indicate that root hairs reduce their involvement in nutrient ion absorption and adapt their immune system in order to engage in the symbiotic interaction. It also appears that the redox status of root hair cells is tuned in response to NF perception. In addition, 1,176 genes that could be considered as papilionoid legume-specific were identified in the M. truncatula root hair transcriptome, from which 141 were found to possess an orthologue in every of the 6 legume genomes that we considered, suggesting their involvement in essential functions

  1. Computed tomography scanning can monitor the effects of soil medium on root system development: an example of salt stress in corn.

    Science.gov (United States)

    Subramanian, Sowmyalakshmi; Han, Liwen; Dutilleul, Pierre; Smith, Donald L

    2015-01-01

    Seeds and young seedlings often encounter high soluble salt levels in the upmost soil layers, impeding vigorous growth by affecting root establishment. Computed tomography (CT) scanning used at low X-ray doses can help study root development in such conditions non-destructively, because plants are allowed to grow throughout the experiment. Using a high-resolution Toshiba XVision CT scanner, we studied corn (Zea mays L.) root growth under optimal and salt-stressed conditions in 3D and on a weekly basis over 3 weeks. Two groups of three corn plants were grown in the controlled environment of a growth chamber, in mid-sized plastic pots filled with sieved and autoclaved sand. Seedlings were subjected to first CT scanning 1 week after seed planting. Our main research objectives concerning root systems were: (i) to quantify structural complexity from fractal dimensions estimated on skeletal 3-D images built from CT scanning data; (ii) to measure growth from volumes and lengths and the derived relative rates and increments, after isolating primary and secondary roots from the soil medium in CT scanning data; and (iii) to assess differences in complexity and growth per week and over Weeks 1-3 for groups of corn plants. Differences between groups were present from Week 1; starting in Week 2 secondary roots were present and could be isolated, which refined the complexity and growth analyses of root systems. Besides expected Week main effects (P medium of crop plants such as corn and the assessment of salt stress effects on developing root systems, in complexity, volume, and length. PMID:25972876

  2. Influence of K on the transport of Cs-137 in soil-plant root and root-leaf systems in sugar beet

    International Nuclear Information System (INIS)

    The main aim of this study was to determine the influence of K-40 activity in the soil on the transport of Cs-137 from the soil to plants and the impact of its activity on the internal transport of Cs-137 between anatomical parts of the sugar beet. The activity concentration of Cs- 137 in the soil was bigger than that in the beet. The highest activity concentration of K-40 was observed in beet leaves, while its content in roots and the soil were comparable. (author)

  3. Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster

    OpenAIRE

    Danjon, Frédéric; Caplan, Joshua S.; Fortin, Mathieu; Meredieu, Céline

    2013-01-01

    Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account ...

  4. The Effect of Tillage System and Rimsulfuron Application on Weed Flora, Arbuscular Mycorrhizal (AM Root Colonization and Yield of Maize (Zea mays L.

    Directory of Open Access Journals (Sweden)

    Dimitrios BILALIS

    2012-11-01

    Full Text Available Field experiments were conducted to determine the effects of tillage system and rimsulfuron application on weed flora and growth of maize (Zea mays L. Mitic F1 at a site with no history of pesticide use for the last 5 years. A randomized complete block design was employed with three replicates per treatment (conventional tillage without rimsulfuron application (control, no-tillage with rimsulfuron application (NT+Rim and conventional tillage with rimsulfuron application (CT+Rim. The lowest leaf area index, dry weight and yield of maize were recorded in NT+Rim plots. In addition, the highest soil bulk density was determined in NT+Rim plots. Moreover, the rimsulfuron application resulted in significant reduction in the root growth and arbuscular mycorrhizal (AM colonization. The lowest root biomass, root length density, root surface and AM root colonization was found in CT+Rim plots. The lowest weed number and biomass was also observed at CT+Rim plots. Sustainability yield index (SYI shown that the maize crop is more stable under conventional tillage compared with no-tillage. Our results indicated that root growth was reduced significant by rimsulfuron application but statistically significant lower maize yield was obtained in no-tillage system.

  5. Sustained Exposure to the Widely Used Herbicide Atrazine: Altered Function and Loss of Neurons in Brain Monoamine Systems

    OpenAIRE

    Rodriguez, Veronica M.; Thiruchelvam, Mona; Cory-Slechta, Deborah A.

    2005-01-01

    The widespread use of atrazine (ATR) and its persistence in the environment have resulted in documented human exposure. Alterations in hypothalamic catecholamines have been suggested as the mechanistic basis of the toxicity of ATR to hormonal systems in females and the reproductive tract in males. Because multiple catecholamine systems are present in the brain, however, ATR could have far broader effects than are currently understood. Catecholaminergic systems such as the two major long-lengt...

  6. Fungal communities in mycorrhizal roots of conifer seedlings in forest nurseries under different cultivation systems, assessed by morphotyping, direct sequencing and mycelial isolation.

    Science.gov (United States)

    Menkis, Audrius; Vasiliauskas, Rimvydas; Taylor, Andrew F S; Stenlid, Jan; Finlay, Roger

    2005-12-01

    Fungi colonising root tips of Pinus sylvestris and Picea abies grown under four different seedling cultivation systems were assessed by morphotyping, direct sequencing and isolation methods. Roots were morphotyped using two approaches: (1) 10% of the whole root system from 30 seedlings of each species and (2) 20 randomly selected tips per plant from 300 seedlings of each species. The first approach yielded 15 morphotypes, the second yielded 27, including 18 new morphotypes. The overall community consisted of 33 morphotypes. The level of mycorrhizal colonisation of roots determined by each approach was about 50%. The cultivation system had a marked effect on the level of mycorrhizal colonisation. In pine, the highest level of colonisation (48%) was observed in bare-root systems, while in spruce, colonisation was highest in polyethylene rolls (71%). Direct internal transcribed spacer ribosomal DNA sequencing and isolation detected a total of 93 fungal taxa, including 27 mycorrhizal. A total of 71 (76.3%) fungi were identified at least to a genus level. The overlap between the two methods was low. Only 13 (13.9%) of taxa were both sequenced and isolated, 47 (50.5%) were detected exclusively by sequencing and 33 (35.5%) exclusively by isolation. All isolated mycorrhizal fungi were also detected by direct sequencing. Characteristic mycorrhizas were Phialophora finlandia, Amphinema byssoides, Rhizopogon rubescens, Suillus luteus and Thelephora terrestris. There was a moderate similarity in mycorrhizal communities between pine and spruce and among different cultivation systems. PMID:16177926

  7. Water Velocity and Bioturbation Alter Sediment Resuspension and Biogeochemistry in an Experimental Freshwater Mesocosm System

    Science.gov (United States)

    Spivak, A.; Vanni, M. J.

    2010-12-01

    Processes such as bioturbation and resuspension can affect organic matter decomposition by altering sediment redox conditions. Increased oxygen availability may, in turn, affect remineralization rates and larger scale processes such as benthic-pelagic coupling. However, relatively few studies have explicitly tested the simultaneous effects of bioturbation and water velocity on benthic biogeochemistry and sediment resuspension. Using a mesocosm system we conducted two experiments testing the effects of bioturbator identity on particulate and dissolved nutrient dynamics before and after a resuspension event (i.e. water velocity held constant at 0.12 m s-1 for 2 hr; Expt. 1) and rates of sediment resuspension with increasing water velocity (0.00 - 0.20 m s-1; Expt. 2). We manipulated bioturbator identity across four levels as sediments were undisturbed (control), manually punctured (2% of surface area), or disturbed by one of two fish species, either bluegill or catfish. For Expt. 1, the bioturbation treatments were applied for several days and measurements were made before and after the resuspension event. Initially, water column chlorophyll and total suspended sediment (TSS) concentrations were highest in the catfish treatments. Bioturbator identity did not affect the stoichiometry of TSS as strongly; C:N was unaffected by our treatments while N:P was lowest in the disturbed treatments. After the resuspension event, there was no difference in TSS concentrations or stoichiometric ratios across the bioturbation treatments. Dissolved nutrient flux rates were insensitive to the bioturbation treatments and were more strongly influenced by the resuspension event. For instance, sediment NO3- fluxes were negative (i.e. net flux into sediments) until after the resuspension event when they became positive. In Expt. 2, we gradually increased water velocity from 0.00 - 0.20 m s-1 and measured TSS concentrations only. TSS was initially highest in catfish treatments and lowest in

  8. Root Raised Cosine (RRC) Filters and Pulse Shaping in Communication Systems

    Science.gov (United States)

    Cubukcu, Erkin

    2012-01-01

    This presentation briefly discusses application of the Root Raised Cosine (RRC) pulse shaping in the space telecommunication. Use of the RRC filtering (i.e., pulse shaping) is adopted in commercial communications, such as cellular technology, and used extensively. However, its use in space communication is still relatively new. This will possibly change as the crowding of the frequency spectrum used in the space communication becomes a problem. The two conflicting requirements in telecommunication are the demand for high data rates per channel (or user) and need for more channels, i.e., more users. Theoretically as the channel bandwidth is increased to provide higher data rates the number of channels allocated in a fixed spectrum must be reduced. Tackling these two conflicting requirements at the same time led to the development of the RRC filters. More channels with wider bandwidth might be tightly packed in the frequency spectrum achieving the desired goals. A link model with the RRC filters has been developed and simulated. Using 90% power Bandwidth (BW) measurement definition showed that the RRC filtering might improve spectrum efficiency by more than 75%. Furthermore using the matching RRC filters both in the transmitter and receiver provides the improved Bit Error Rate (BER) performance. In this presentation the theory of three related concepts, namely pulse shaping, Inter Symbol Interference (ISI), and Bandwidth (BW) will be touched upon. Additionally the concept of the RRC filtering and some facts about the RRC filters will be presented

  9. Catch crop biomass production, nitrogen uptake and root development under different tillage systems

    DEFF Research Database (Denmark)

    Munkholm, Lars Juhl; Hansen, Elly Møller

    2012-01-01

    Catch crops are generally regarded as an efficient tool to reduce nitrate leaching. However, the benefits need to be balanced against potential adverse effects on the main crop yields. The objectives of the study were to study three contrasting catch crops, that is, dyer’s woad (DW) (Isatis......). Above-ground biomass production and N uptake were measured in the catch crops and the main crop. Catch crop root growth was studied using both minirhizotron and core methods. Soil penetration resistance was recorded to 60 cm depth. Fodder radish and RG produced up to 1800 kg/ha dry matter and DW 900 kg....../ha. The nitrogen uptake in November was 55, 37 and 31 kg N/ha for FR, RG and DW, respectively, when averaged across the 2 yr of study. The yield of the spring barley main crop was in general highest where FR was grown as a catch crop. Ploughing tended to result in highest yields although differences were only...

  10. Clifford algebra unveils a surprising geometric significance of quaternionic root systems of Coxeter groups

    CERN Document Server

    Dechant, Pierre-Philippe

    2013-01-01

    Quaternionic representations of Coxeter (reflection) groups of ranks 3 and 4, as well as those of E_8, have been used extensively in the literature. The present paper analyses such Coxeter groups in the Clifford Geometric Algebra framework, which affords a simple way of performing reflections and rotations whilst exposing more clearly the underlying geometry. The Clifford approach shows that the quaternionic representations in fact have very simple geometric interpretations. The representations of the groups A_1 x A_1 x A_1, A_3, B_3 and H_3 of rank 3 in terms of pure quaternions are shown to be simply the Hodge dualised root vectors, which determine the reflection planes of the Coxeter groups. Two successive reflections result in a rotation, described by the geometric product of the two reflection vectors, giving a Clifford spinor. The spinors for the rank-3 groups A_1 x A_1 x A_1, A_3, B_3 and H_3 yield a new simple construction of binary polyhedral groups. These in turn generate the groups A_1 x A_1 x A_1 ...

  11. Catalan Solids Derived From 3D-Root Systems and Quaternions

    CERN Document Server

    Koca, Mehmet; Koc, Ramazan

    2009-01-01

    Catalan Solids are the duals of the Archimedean solids, vertices of which can be obtained from the Coxeter-Dynkin diagrams A3, B3 and H3 whose simple roots can be represented by quaternions. The respective Weyl groups W(A3), W(B3) and W(H3) acting on the highest weights generate the orbits corresponding to the solids possessing these symmetries. Vertices of the Platonic and Archimedean solids result as the orbits derived from fundamental weights. The Platonic solids are dual to each others however duals of the Archimedean solids are the Catalan solids whose vertices can be written as the union of the orbits, up to some scale factors, obtained by applying the above Weyl groups on the fundamental highest weights (100), (010), (001) for each diagram. The faces are represented by the orbits derived from the weights (010), (110), (101), (011) and (111) which correspond to the vertices of the Archimedean solids. Representations of the Weyl groups W(A3), W(B3) and W(H3) by the quaternions simplify the calculations w...

  12. Wfs1-deficient mice display altered function of serotonergic system and increased behavioural response to antidepressants

    Directory of Open Access Journals (Sweden)

    Tanel eVisnapuu

    2013-07-01

    Full Text Available It has been shown that mutations in the WFS1 gene make humans more susceptible to mood disorders. Besides that, mood disorders are associated with alterations in the activity of serotonergic and noradrenergic systems. Therefore, in this study, the effects of imipramine, an inhibitor of serotonin (5-HT and noradrenaline (NA reuptake, and paroxetine, a selective inhibitor of 5-HT reuptake, were studied in tests of behavioural despair. The tail suspension test (TST and forced swimming test (FST were performed in Wfs1-deficient mice. Simultaneously, gene expression and monoamine metabolism studies were conducted to evaluate changes in 5-HT- and NA-ergic systems of Wfs1-deficient mice. The basal immobility time of Wfs1-deficient mice in TST and FST did not differ from that of their wild-type littermates. However, a significant reduction of immobility time in response to lower doses of imipramine and paroxetine was observed in homozygous Wfs1-deficient mice, but not in their wild-type littermates. In gene expression studies, the levels of 5-HT transporter (SERT were significantly reduced in the pons of homozygous animals. Monoamine metabolism was assayed separately in the dorsal and ventral striatum of naive mice and mice exposed for 30 minutes tobrightly lit motility boxes. We found that this aversive challenge caused a significant increase in the levels of 5-HT and 5-hydroxyindoleacetic acid (5-HIAA, a metabolite of 5-HT, in the ventral and dorsal striatum of wild-type mice, but not in their homozygous littermates. Taken together, the blunted 5-HT metabolism and reduced levels of SERT are a likely reason for the elevated sensitivity of these mice to the action of imipramine and paroxetine. These changes in the pharmacological and neurochemical phenotype of Wfs1-deficient mice may help to explain the increased susceptibility of Wolfram syndrome patients to depressive states.

  13. Numerical Models of Human Circulatory System under Altered Gravity: Brain Circulation

    Science.gov (United States)

    Kim, Chang Sung; Kiris, Cetin; Kwak, Dochan; David, Tim

    2003-01-01

    A computational fluid dynamics (CFD) approach is presented to model the blood flow through the human circulatory system under altered gravity conditions. Models required for CFD simulation relevant to major hemodynamic issues are introduced such as non-Newtonian flow models governed by red blood cells, a model for arterial wall motion due to fluid-wall interactions, a vascular bed model for outflow boundary conditions, and a model for auto-regulation mechanism. The three-dimensional unsteady incompressible Navier-Stokes equations coupled with these models are solved iteratively using the pseudocompressibility method and dual time stepping. Moving wall boundary conditions from the first-order fluid-wall interaction model are used to study the influence of arterial wall distensibility on flow patterns and wall shear stresses during the heart pulse. A vascular bed modeling utilizing the analogy with electric circuits is coupled with an auto-regulation algorithm for multiple outflow boundaries. For the treatment of complex geometry, a chimera overset grid technique is adopted to obtain connectivity between arterial branches. For code validation, computed results are compared with experimental data for steady and unsteady non-Newtonian flows. Good agreement is obtained for both cases. In sin-type Gravity Benchmark Problems, gravity source terms are added to the Navier-Stokes equations to study the effect of gravitational variation on the human circulatory system. This computational approach is then applied to localized blood flows through a realistic carotid bifurcation and two Circle of Willis models, one using an idealized geometry and the other model using an anatomical data set. A three- dimensional anatomical Circle of Willis configuration is reconstructed from human-specific magnetic resonance images using an image segmentation method. The blood flow through these Circle of Willis models is simulated to provide means for studying gravitational effects on the brain

  14. Study on the system development for evaluating long-term alteration of hydraulic field in near field

    International Nuclear Information System (INIS)

    For the high performance evaluation of reliability of TRU waste repository, the system development for evaluating long-term alteration in consideration of the changes action of barrier materials of hydraulic field in Near Field is required. In this research, system development for evaluating long-term alteration of hydraulic field in Near Field was examined. Examination of the basic specification of chemical/dynamic alteration action analysis system used as the composition element of this system and a whole system were performed. The research result of this year is shown below. 1) The system by which the chemical changes happened by Near Field as influence of the exudation liquid from cement material are evaluated was examined. In this year, document investigation about the various processes about chemical alteration and extraction of a choice, presentation of the uncertainty about a model or data, preliminary modeling, a simple analysis tool creation and sensitivity analysis, extraction of the process which should be taken into consideration in a system valuation modeling and a phenomenon analysis model, and a corresponding mathematics model, optimization of the software composition for development of a system valuation modeling, the exercise by the preliminary system analysis model, the experiment plan for the corroboration of a model were shown. 2) In consideration of change of the physical characteristic accompanying chemical alteration of bentonite material and cement material, the system by which dynamic changes action of repository is evaluated was examined. In this year, arrangement of the dynamics action of repository for long-term were shown. Extraction of a phenomenon made applicable to evaluation was shown. And the dynamic models were investigated and the prototype of the dynamics model that can take into consideration the characteristic of bentonite material was shown. And the basic composition of a dynamic changes action analysis system was shown. 3

  15. Response of root system growth to low-light stress in indica rice%水稻根系生长对弱光胁迫的响应

    Institute of Scientific and Technical Information of China (English)

    王丽; 邓飞; 郑军; 赵柳; 任万军; 杨文钰

    2012-01-01

    通过盆栽控光试验,研究不同生育阶段遮荫对冈优906根系生长的影响以及不同品种对弱光胁迫的响应.结果表明:抽穗前遮荫处理,随遮荫程度加重,冈优906根系体积、总吸收面积和活跃吸收面积均有所降低,根系生长受到抑制;始穗后轻度遮荫处理(遮53%光强),其根系体积、总吸收面积、活跃吸收面积和根冠比增加,根系生长得以促进,衰老延迟;始穗后重度遮荫(遮73%光强)则不利于其根系正常生长,根系体积、总吸收面积、活跃吸收面积和根系α-萘胺氧化力降低.不同品种根系生长对弱光的反应不同:冈优906耐荫性较强,有较高的根系a-萘胺氧化力和活跃吸收面积;耐荫性较弱的Ⅱ优498则表现为根系α-萘胺氧化力和活跃吸收面积的较大幅度减少.灰色关联度分析表明,根系α-萘胺氧化力和活跃吸收面积可以作为耐荫性敏感鉴定的有效指标.%Rice (Oryza sativa L.) as a photophilous crop, often encounters low-light environment during the growth stage in rice-producing areas particularly in Sichuan. Low-light stress seriously affects the morphology, physiology, grain yield and quality of rice. However, the response of rice root system to low-light stress is not so far clear. Therefore, we seeks to examine the responses of five rice varieties to low-light stress at different growth stages through pot experiments under artificially-controlled shading condition using white cotton yarn screen. By a completely randomized design, the pot experiments were carried out on the experimental farm of Sichuan Agricultural University in 2009. In experiment 1, one-layer and two-layer white cotton yarn screens, which shaded about 53 % and 73 % of the full light intensity respectively, were covered on the top of rice canopy of Gangyou 906 at tillering-elongation stage, elongation-booting stage, booting-heading stage, and heading-maturing stage respectively. In experiment 2

  16. The general detector test system under Linux based on root interface

    International Nuclear Information System (INIS)

    This paper has introduced a general detector test system based on graph interface that under Linux operating system. This system can install expediently according to the different requirement of experiment. It can realize the control for high voltage; realize the automation measure the curve of efficiency and counting rate; the measurement of the signal amplitude, charge and time under different high voltage. (authors)

  17. Long term global scale root zone soil moisture monitoring at ECMWF using a surface-only land data assimilation system

    Science.gov (United States)

    Albergel, Clement; de Rosnay, Patricia; Balsamo, Gianpaolo; Dutra, Emanuel; Kral, Tomas; Munoz-Sabater, Joaquin; Isaksen, Lars; Boussetta, Souhail; Massari, Christian; Brocca, Luca

    2015-04-01

    In the framework of the H-SAF (Satellite Application Facility on Support to Operational Hydrology and Water Management) project of EUMETSAT, ECMWF is developing a re-analysis of soil moisture that will cover 1992-2014 and will make use of satellite derived surface soil moisture (SSM) from ERS-1&2, ASCAT. This study presents the first steps toward the conception of this long term global scale root zone soil moisture; a surface-only Land Data Assimilation System (so-LDAS) able to ingest satellite-derived SSM observations is tested at global scale to increase prediction accuracy for surface and root zone soil moisture. The so-LDAS is defined as an offline sequential data assimilation system (simplified Extended Kalman Filter) based on a Land Surface Model (HTESSEL) uncoupled with the atmosphere, it is driven by ERA-Interim observations based atmospheric forcing. Its impact is assessed over 2010-2013 (1) using local in situ measurements of surface and root zone soil moisture and (2) at a basin scale initialising an event based Rainfall-Runoff hydrological model. Additionally to an open loop experiment (OL no analysis) three data assimilation experiments are used with different specification of the error matrices. The first one (Asc1) has been set up to test the so-LDAS with a soil moisture standard deviation of σb=0.01 m3m-3 for the first three layers of soil analysed and σo=0.02 m3m-3 for ASCAT SSM. σb was then doubled (Asc2) and σo set to 0.05 m3m-3 to be more consistent with satellite derived SSM errors deduced from previous independent studies. In a third experiment (Asc3), σo is set to 0.05 m3m-3, σb, is set to 0.1 × (wfc - wwilt), where wfc and wwilt are the volumetric water content at field capacity and at permanent wilting point, which depend on soil texture.

  18. Nitrogen dynamics in the soil-plant system under deficit and partial root-zone drying irrigation strategies in potatoes

    DEFF Research Database (Denmark)

    Shahnazari, Ali; Ahmadi, Seyed Hamid; Lærke, Poul Erik;

    2008-01-01

    Experiments were conducted in lysimeters with sandy soil under an automatic rain-out shelter to study the effects of subsurface drip irrigation treatments, full irrigation (FI), deficit irrigation (DI) and partial root-zone drying (PRD), on nitrogen (N) dynamics in the soil-plant system of potatoes....... In 2005, FI and PRD2 were investigated, where FI plants received 100% of evaporative demands, while PRD2 plants received 70% water of FI at each irrigation event after tuber initiation. In 2006, besides FI and PRD2 treatments, DI and PRDI receiving 70% water of FI during the whole season were also...... investigated water saving irrigation strategies (PRD1, PRD2, DI) PRD imposedjust after tuber initiation until maturity (PRD2) was the only strategy able to maintain yield; thus, soil drying induced by PRD or DI treatments should be avoided during early growth stages; (2) the PRD and DI treatments improved soil...

  19. Effects of a dwarfing compound, CCC, on the production and export of gibberellin-like substances by root systems.

    Science.gov (United States)

    Reid, D M; Carr, D J

    1967-03-01

    (2-Chloroethyl)trimethylammonium chloride (Cycocel or CCC), an inhibitor of gibberellin biosynthesis, when repeatedly supplied to the root systems of balsam (Impatiens glandulifera Royle) plants reduces growth in height and the level of gibberellin-like substances in the bleeding sap that exudes from the stumps of detopped plants. Within twelve hours after a single application of the inhibitor to decapitated field peas (Pisum arvense), there are quantitative and qualitative changes in the gibberellins of the sap compared with those in sap collected over the same period of time from untreated plants. These changes are interpreted in terms of the possible blockage by CCC of normal gibberellin production and diversion of precursors into synthesis of "abnormal" gibberellins. PMID:24554364

  20. Nitrate Starvation Induced Changes in Root System Architecture, Carbon:Nitrogen Metabolism, and miRNA Expression in Nitrogen-Responsive Wheat Genotypes.

    Science.gov (United States)

    Sinha, Subodh Kumar; Rani, Manju; Bansal, Niketa; Gayatri; Venkatesh, K; Mandal, P K

    2015-11-01

    Improvement of nutrient use efficiency in cereal crops is highly essential not only to reduce the cost of cultivation but also to save the environmental pollution, reduce energy consumption for production of these chemical fertilizers, improve soil health, and ultimately help in mitigating climate change. In the present investigation, we have studied the morphological (with special emphasis on root system architecture) and biochemical responses (in terms of assay of the key enzymes involved in N assimilation) of two N-responsive wheat genotypes, at the seedling stage, under nitrate-optimum and nitrate-starved conditions grown in hydroponics. Expression profile of a few known wheat micro RNAs (miRNAs) was also studied in the root tissue. Total root size, primary root length, and first- and second-order lateral root numbers responded significantly under nitrate-starved condition. Morphological parameters in terms of root and shoot length and fresh and dry weight of roots and shoots have also been observed to be significant between N-optimum and N-starved condition for each genotypes. Nitrate reductase (NR), glutamine synthatase (GS), and glutamate dehydrogenase (GDH) activity significantly decreased under N-starved condition. Glutamine oxoglutarate amino transferase (GOGAT) and pyruvate kinase (PK) activity was found to be genotype dependent. Most of the selected miRNAs were expressed in root tissues, and some of them showed their differential N-responsive expression. Our studies indicate that one of the N-responsive genotype (NP-890) did not get affected significantly under nitrogen starvation at seedling stage. PMID:26315134

  1. Clinical microscopic analysis of ProTaper retreatment system efficacy considering root canal thirds using three endodontic sealers.

    Science.gov (United States)

    Só, Marcus Vinícius Reis; De Figueiredo, Jose Antônio Poli; Freitas Fachin, Elaine Vianna; Húngaro Duarte, Marco Antônio; Pereira, Jefferson Ricardo; Kuga, Milton Carlos; Da Rosa, Ricardo Abreu

    2012-09-01

    To evaluate the efficacy of ProTaper Universal rotary retreatment system and the influence of sealer type on the presence of filling debris in the reinstrumented canals viewed in an operative clinical microscope. Forty-five palatal root canals of first molars were filled with gutta-percha and one of the following sealers: G1, EndoFill; G2, AH Plus; G3, Sealapex. The canals were then reinstrumented with ProTaper Universal rotary system. Roots were longitudinally sectioned and examined under an operative clinical microscope (10×), and the amount of filling debris on canal walls was analyzed using the AutoCAD 2004 software. A single operator used a specific software tool to outline the canal area and the filling debris area in each third (cervical, middle, and apical), as well as the total canal area. Data were analyzed by Kruskal-Wallis test and Tukey test at P < 0.05. Sealapex demonstrated significant differences in the average of filling debris area/canal among the 3 thirds. This group revealed that apical third showed more debris than the both cervical and middle third (P < 0.0001). Endofill presented significantly more filling debris than Sealapex in the cervical third (P < 0.05). In the middle (P = 0.12) and apical third (P = 0.10), there were no differences amongst groups. Debris was left in all canal thirds, regardless of the retreatment technique. The greatest differences between techniques and sealers were found in the cervical third. PMID:22496039

  2. Sexual differentiation of the brain: a model for drug-induced alterations of the reproductive system

    International Nuclear Information System (INIS)

    The process of the sexual differentiation of the brain represents a valuable model system for the study of the chemical modification of the mammalian brain. Although there are numerous functional and structural sex differences in the adult brain, these are imposed on an essentially feminine or bipotential brain by testicular hormones during a critical phase of perinatal development in the rat. It is suggested that a relatively marked structural sex difference in the rat brain, the sexually dimorphic nucleus of the preoptic area (SDN-POA), is a morphological signature of the permanent or organizational action of estradiol derived from the aromatization of testicular testosterone. The SDN-POA of the male rat is severalfold larger in volume and is composed of more neurons than that of the female. The observation that the mitotic formation of the neurons of the SDN-POA is specifically prolonged has enabled us to identify the time course and pathway of neuronal migration into the nucleus. Study of the development of the SDN-POA suggests that estradiol in the male increases the number of neurons which survive a phase of neuronal death by exerting a neurite growth promoting action and/or a direct neuronotrophic action. Finally, although it is clear that gonadal hormones have dramatic permanent effects on the brain during perinatal development, even after puberty and in adulthood gonadal steroids can alter neuronal structure and, perhaps as a corollary to this, have permanent effects on reproductive function. Although the brain may be most sensitive to gonadal hormones or exogenous chemical factors during perinatal development, such as sensitivity does not appear limited to this period

  3. Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength.

    Science.gov (United States)

    Haling, Rebecca E; Brown, Lawrie K; Bengough, A Glyn; Young, Iain M; Hallett, Paul D; White, Philip J; George, Timothy S

    2013-09-01

    Root hairs are a key trait for improving the acquisition of phosphorus (P) by plants. However, it is not known whether root hairs provide significant advantage for plant growth under combined soil stresses, particularly under conditions that are known to restrict root hair initiation or elongation (e.g. compacted or high-strength soils). To investigate this, the root growth and P uptake of root hair genotypes of barley, Hordeum vulgare L. (i.e. genotypes with and without root hairs), were assessed under combinations of P deficiency and high soil strength. Genotypes with root hairs were found to have an advantage for root penetration into high-strength layers relative to root hairless genotypes. In P-deficient soils, despite a 20% reduction in root hair length under high-strength conditions, genotypes with root hairs were also found to have an advantage for P uptake. However, in fertilized soils, root hairs conferred an advantage for P uptake in low-strength soil but not in high-strength soil. Improved root-soil contact, coupled with an increased supply of P to the root, may decrease the value of root hairs for P acquisition in high-strength, high-P soils. Nevertheless, this work demonstrates that root hairs are a valuable trait for plant growth and nutrient acquisition under combined soil stresses. Selecting plants with superior root hair traits is important for improving P uptake efficiency and hence the sustainability of agricultural systems. PMID:23861547

  4. Reciprocating vs Rotary Instrumentation in Pediatric Endodontics: Cone Beam Computed Tomographic Analysis of Deciduous Root Canals using Two Single-file Systems

    Science.gov (United States)

    Prabhakar, Attiguppe R; Yavagal, Chandrashekar; Naik, Saraswathi V

    2016-01-01

    ABSTRACT Background: Primary root canals are considered to be most challenging due to their complex anatomy. "Wave one" and "one shape" are single-file systems with reciprocating and rotary motion respectively. The aim of this study was to evaluate and compare dentin thickness, centering ability, canal transportation, and instrumentation time of wave one and one shape files in primary root canals using a cone beam computed tomographic (CBCT) analysis. Study design: This is an experimental, in vitro study comparing the two groups. Materials and methods: A total of 24 extracted human primary teeth with minimum 7 mm root length were included in the study. Cone beam computed tomographic images were taken before and after the instrumentation for each group. Dentin thickness, centering ability, canal transportation, and instrumentation times were evaluated for each group. Results: A significant difference was found in instrumentation time and canal transportation measures between the two groups. Wave one showed less canal transportation as compared with one shape, and the mean instrumentation time of wave one was significantly less than one shape. Conclusion: Reciprocating single-file systems was found to be faster with much less procedural errors and can hence be recommended for shaping the root canals of primary teeth. How to cite this article: Prabhakar AR, Yavagal C, Dixit K, Naik SV. Reciprocating vs Rotary Instrumentation in Pediatric Endodontics: Cone Beam Computed Tomographic Analysis of Deciduous Root Canals using Two Single-File Systems. Int J Clin Pediatr Dent 2016;9(1):45-49. PMID:27274155

  5. Metabolic system alterations in pancreatic cancer patient serum: potential for early detection

    International Nuclear Information System (INIS)

    The prognosis of pancreatic cancer (PC) is one of the poorest among all cancers, due largely to the lack of methods for screening and early detection. New biomarkers for identifying high-risk or early-stage subjects could significantly impact PC mortality. The goal of this study was to find metabolic biomarkers associated with PC by using a comprehensive metabolomics technology to compare serum profiles of PC patients to healthy control subjects. A non-targeted metabolomics approach based on high-resolution, flow-injection Fourier transform ion cyclotron resonance mass spectrometry (FI-FTICR-MS) was used to generate comprehensive metabolomic profiles containing 2478 accurate mass measurements from the serum of Japanese PC patients (n=40) and disease-free subjects (n=50). Targeted flow-injection tandem mass spectrometry (FI-MS/MS) assays for specific metabolic systems were developed and used to validate the FI-FTICR-MS results. A FI-MS/MS assay for the most discriminating metabolite discovered by FI-FTICR-MS (PC-594) was further validated in two USA Caucasian populations; one comprised 14 PCs, six intraductal papillary mucinous neoplasims (IPMN) and 40 controls, and a second comprised 1000 reference subjects aged 30 to 80, which was used to create a distribution of PC-594 levels among the general population. FI-FTICR-MS metabolomic analysis showed significant reductions in the serum levels of metabolites belonging to five systems in PC patients compared to controls (all p<0.000025). The metabolic systems included 36-carbon ultra long-chain fatty acids, multiple choline-related systems including phosphatidylcholines, lysophosphatidylcholines and sphingomyelins, as well as vinyl ether-containing plasmalogen ethanolamines. ROC-AUCs based on FI-MS/MS of selected markers from each system ranged between 0.93 ±0.03 and 0.97 ±0.02. No significant correlations between any of the systems and disease-stage, gender, or treatment were observed. Biomarker PC-594 (an ultra long

  6. ROOT TEMPERATURE EFFECT ON ROOT HYDRAULIC RESISTANCE IN CUCUMBER (CUCUMIS SATIVUS L.) AND FIGLEAF GOURD (CUCURBITA FICIFOLIA B.) PLANTS

    OpenAIRE

    Yoshida, Satoshi; Eguchi, Hiromi

    1990-01-01

    The effect of root temperature on total root resistance (hydraulic resistance in a whole root system) was examined in detached whole root systems of cucumber and figleaf gourd plants by applying the suction of 80kPa in root temperature region of 8 to 32℃. The total root resistances in both species became higher at lower root temperatures. From the fact that radial root resistance is about 80% of total root resistance, it could be conceivable that the temperature effect on the total root resis...

  7. Cone-Beam Computed Tomography Assessment of Root Canal Transportation by Neoniti and Reciproc Single-File Systems

    Science.gov (United States)

    Moazzami, Fariborz; Khojastepour, Leila; Nabavizadeh, Mohammadreza; Seied Habashi, Mina

    2016-01-01

    Introduction: The aim of this in vitro study was to compare the canal transportation of two single-file engine-driven systems, Neoniti and Reciproc, using cone-beam computed tomography (CBCT). Methods and Materials: Forty-five non-calcified roots with mature apices and apical curvature of 15-30 degrees were selected from extracted human maxillary molars for this study. Samples were randomly divided into two groups (n=20) and a control group (n=5) and canal preparation with either system was performed according to manufacturers' instructions. Pre- and post-instrumentation CBCT images were captured and the amount of canal transportation within the files was calculated at levels of 3, 4, and 5 mm from the apex. The independent sample t-test was used to analyze the statistical significance between the two groups. The level of significance was defined at 0.05. Results: Reciproc created more canal transportation compared to Neoniti in both mesiodistal and buccolingual directions. The difference between the two systems was statistically significant in all evaluated distances from the apex (PReciproc systems have significant difference in terms of creating canal transportation. Reciproc created more canal transportation in buccolingual and mesiodistal dimensions. PMID:27141215

  8. Computed tomography scanning can monitor the effects of soil medium on root system development: An example of salt stress in corn

    Directory of Open Access Journals (Sweden)

    Sowmyalakshmi eSubramanian

    2015-04-01

    Full Text Available Seeds and young seedlings often encounter high soluble salt levels in the upmost soil layers, impeding vigorous growth by affecting root establishment. Computed tomography (CT scanning used at low X-ray doses can help study root development in such conditions non-destructively, because plants are allowed to grow throughout the experiment. Using a high-resolution Toshiba XVision CT scanner, we studied corn (Zea mays L. root growth under optimal and salt-stressed conditions in 3D and on a weekly basis over 3 weeks. Two groups of 3 corn plants were grown in the controlled environment of a growth chamber, in mid-sized plastic pots filled with sieved and autoclaved sand. Seedlings were subjected to first CT scanning one week after seed planting. Our main research objectives concerning root systems were: (i to quantify structural complexity from fractal dimensions estimated on skeletal 3-D images built from CT scanning data; (ii to measure growth from volumes and derived relative rates, after isolating primary and secondary roots from the soil medium in CT scanning data; and (iii to assess differences in complexity and growth per week and over Weeks 1–3 for groups of corn plants. Differences between groups were present from Week 1; starting in Week 2 secondary roots were present and could be isolated, which refined the complexity and growth analyses of root systems. Besides expected Week main effects (P < 0.01 or 0.05, Week x Group interaction (P < 0.05 or 0.10 and Group main effects were observed, which is remarkable given the small sample sizes. Graphical, quantitative and statistical analyses of CT scanning data were thus completed at an unprecedented level, and provided new and important insights regarding root system development. Repeated CT scanning is the key to a better understanding of the establishment in the soil medium of crop plants such as corn and the assessment of salt stress effects on developing root systems, in complexity and

  9. Root canal

    Science.gov (United States)

    Endodontic therapy ... the root of a tooth. Generally, there is pain and swelling in the area. The infection can ... You may have some pain or soreness after the procedure. An over-the-counter anti-inflammatory drug, such as ibuprofen or naproxen, can help relieve ...

  10. The Astronomical Roots of Sapling Learning: Building a Comprehensive Online Homework System for Astro 101

    Science.gov (United States)

    Urban, A.

    2014-07-01

    I discuss the method of creating a library of questions for Astro 101 within the Sapling Learning homework system, as well as the philosophy behind the types of homework questions (and feedback) that are being written. The system's features were built around meeting five basic goals: flexibility, engaging content, peer instruction, immediate instructional feedback, and exploration.

  11. Evaluating root zone water quality impacts associated with various biomass production systems across landscape positions

    Science.gov (United States)

    Welsh, W.; Zhou, X.; Helmers, M. J.; Schulte Moore, L.; Isenhart, T.; Kolka, R.

    2011-12-01

    Evaluating the water quality impacts of biomass production systems is essential to assessing biomass production systems' environmental impacts. The objective of this study is to determine potential water quality impacts of various production systems across different landscape positions. Five production systems are being evaluated: (1) continuous corn, (2) corn-soy/triticale-soy, (3) switchgrass, (4) triticale/sorghum, and (5) triticale/trees, at five landscape locations: (1) summit, (2) shoulder, (3) backslope, (4) toeslope, and (5) floodplain. Each production system is randomly assigned within three replicates at each landscape location. Soil water samples are taken monthly during the growing season from two suction lysimeters per plot at a depth of 60cm. Initial results indicate significant differences between the production systems and a likely association between fertilizer input and NO3-N concentrations with corn plots having the highest concentration and the tree plots having the lowest. Relatively high concentrations in the corn and sorghum plots following fertilization were observed the first year and similar results are being observed early in the second year of observations. A significant landscape effect was observed late in the growing season during the first year of this study. Quantifying the environmental impacts of biomass production systems will aid in optimizing deployment as producers gear up to meet biomass production demand.

  12. Fibrous-Root-Inspired Design and Lithium Storage Applications of a Co-Zn Binary Synergistic Nanoarray System.

    Science.gov (United States)

    Yu, Jia; Chen, Shimou; Hao, Wenjun; Zhang, Suojiang

    2016-02-23

    Developing lithium ion batteries (LIBs) with fast charging/discharging capability and high capacity is a significant issue for future technical requirements. Transition-metal oxide (TMO) materials are widely studied as the next-generation LIB anode to satisfy this requirement due to their specific capacity, nearly three times than that of conventional graphite anode, and low cost. Meanwhile, they also suffer from slow lithium diffusion and limited electrochemical and structural stability, especially at high charging/discharging rate. The structure design of TMO is an effective strategy to obtain desirable LIB performance. Herein, inspired by natural fibrous roots consisting of functional and supporting units that can enhance substances and energy exchange efficiently, fibrous-root-like Zn(x)Co(3-x)O4@Zn(1-y)Co(y)O binary TMO nanoarrays are designed and synthesized on Cu substrates through a facile one-pot, successive-deposition process for use as an integrated LIB anode. In a multilevel array ordered by orientation, ultrafine Zn(x)Co(3-x)O4 nanowire functional units and stable Zn(1-y)Co(y)O nanorod supporting units synergize, resulting in superior rate performance. At a high current density of 500 mAg(-1), they could maintain a discharge capacity as high as 804 mAh g(-1) after 100 cycles, working much higher than unary cobalt-based and zinc-based nanoarrays. This binary synergistic nanoarray system identifies an optimized electrode design strategy for advanced battery materials. PMID:26841220

  13. Effect of titanium and stainless steel posts in detection of vertical root fractures using NEWTOM VG cone beam computed tomography system

    International Nuclear Information System (INIS)

    Vertical root fracture (VRF) is a common complication in endodontically treated teeth. Considering the poor prognosis of VRF, a reliable and valid detection method is necessary. Cone beam computed tomography (CBCT) has been reported to be a reliable tool for the detection of VRF; however, the presence of metallic intracanal posts can decrease the diagnostic values of CBCT systems. This study evaluated and compared the effects of intracanal stainless steel or titanium posts on the sensitivity, specificity, and accuracy of VRF detection using a NewTom VG CBCT system. Eighty extracted single-rooted teeth were selected and sectioned at the cemento-enamel junction. The roots were divided into two groups of 40. Root fracture was induced in the test group by using an Instron machine, while the control group was kept intact. Roots were randomly embedded in acrylic blocks and radiographed with the NewTom VG, both with titanium and stainless steel posts and also without posts. Sensitivity, specificity, and accuracy values were calculated as compared to the gold standard. The sensitivity, specificity, and accuracy of VRF diagnosis were significantly lower in teeth with stainless steel and titanium posts than in those without posts. Interobserver agreement was the highest in teeth without posts, followed by stainless steel posts, and then titanium posts. Intracanal posts significantly decreased the VRF diagnostic values of CBCT. The stainless steel posts decreased the diagnostic values more than the titanium posts.

  14. Effect of titanium and stainless steel posts in detection of vertical root fractures using NEWTOM VG cone beam computed tomography system

    Energy Technology Data Exchange (ETDEWEB)

    Mohammadpour, Mahdis [Dept. of Oral and Maxillofacial Radiology, School of Dentistry, Qazvin University of Medical Sciences, Qazvin (Iran, Islamic Republic of); Bakhshalian, Neema [Dept. of Advanced Periodontology, Ostrow School of Dentistry, University of Southern California, Los Angeles (United States); Shahab, Shahriar [Dept. of Oral and Maxillofacial Radiology, School of Dentistry, Shahed University, Tehran (Iran, Islamic Republic of); Sadeghi, Shaya; Ataee, Mona [Radmehr Oral and Maxillofacial Radiology Clinic, Ghazvin (Iran, Islamic Republic of); Sarikhani, Soodeh [Dept. of Oral and Maxillofacial Radiology, School of Dentistry, University of Golestan, Gorgan (Iran, Islamic Republic of)

    2014-06-15

    Vertical root fracture (VRF) is a common complication in endodontically treated teeth. Considering the poor prognosis of VRF, a reliable and valid detection method is necessary. Cone beam computed tomography (CBCT) has been reported to be a reliable tool for the detection of VRF; however, the presence of metallic intracanal posts can decrease the diagnostic values of CBCT systems. This study evaluated and compared the effects of intracanal stainless steel or titanium posts on the sensitivity, specificity, and accuracy of VRF detection using a NewTom VG CBCT system. Eighty extracted single-rooted teeth were selected and sectioned at the cemento-enamel junction. The roots were divided into two groups of 40. Root fracture was induced in the test group by using an Instron machine, while the control group was kept intact. Roots were randomly embedded in acrylic blocks and radiographed with the NewTom VG, both with titanium and stainless steel posts and also without posts. Sensitivity, specificity, and accuracy values were calculated as compared to the gold standard. The sensitivity, specificity, and accuracy of VRF diagnosis were significantly lower in teeth with stainless steel and titanium posts than in those without posts. Interobserver agreement was the highest in teeth without posts, followed by stainless steel posts, and then titanium posts. Intracanal posts significantly decreased the VRF diagnostic values of CBCT. The stainless steel posts decreased the diagnostic values more than the titanium posts.

  15. REVIEW OF SQUARE ROOTING AND TONE INJECTION METHOD FOR PAPR REDUCTION IN OFDM SYSTEM

    OpenAIRE

    Prof. Ananta S. Chavan*, Prof. Kailash V. Karad

    2016-01-01

    The best multi-carrier system for wireless communication is an OFDM system for which PAPR is one of the major critical problems. Previously, various solutions have been proposed to reduce the PAPR. In this paper, we are reviewing these solutions on basis of PAPR, bit error rate (BER), complimentary cumulative distribution function (CCDF), in band and out of band radiation. Later section investigates the simulation results and conclusion based on the above parameters.

  16. Physarum Polycephalum Syllogistic L-Systems and Judaic Roots of Unconventional Computing

    OpenAIRE

    Schumann Andrew

    2016-01-01

    We show that in Kabbalah, the esoteric teaching of Judaism, there were developed ideas of unconventional automata in which operations over characters of the Hebrew alphabet can simulate all real processes producing appropriate strings in accordance with some algorithms. These ideas may be used now in a syllogistic extension of Lindenmayer systems (L-systems), where we deal also with strings in the Kabbalistic-Leibnizean meaning. This extension is illustrated by the behavior of Physarum polyce...

  17. Hormonal response and root architecture in Arabidopsis thaliana subjected to heavy metals

    Directory of Open Access Journals (Sweden)

    Antonella Vitti

    2014-05-01

    Full Text Available In this work, specific concentrations of cadmium, copper and zinc in double combination, were supplied for 12 days to growing seedlings of the model species Arabidopsis thaliana. Metal accumulation was measured in roots and shoots. Microscopic analyses revealed that root morphology was affected by metals, and that the root and shoot levels of indole-3-acetic acid, trans-zeatin riboside and dihydrozeatin riboside varied accordingly. Minor modifications in gibberellic acid levels occurred in the Zinc treatments, whereas abscisic acid level did not change after the exposition to metals. Reverse transcription polymerase chain reaction analysis of some genes involved in auxin and cytokinin synthesis (AtAAO, AtNIT and AtIPT revealed that their expression were not affected by metal treatments. The root morphological alterations that resulted in an increased surface area, due to the formation of root hairs and lateral roots, could be signs of the response to metal stress in terms of a functionally-addressed reorientation of root growth. The root system plasticity observed could be important for better understanding the manner in which the root architecture is shaped by environmental and hormonal stimuli.

  18. Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana.

    Science.gov (United States)

    Bouché, Frédéric; D'Aloia, Maria; Tocquin, Pierre; Lobet, Guillaume; Detry, Nathalie; Périlleux, Claire

    2016-01-01

    Molecular data concerning the involvement of roots in the genetic pathways regulating floral transition are lacking. In this study, we performed global analyses of the root transcriptome in Arabidopsis in order to identify flowering time genes that are expressed in the roots and genes that are differentially expressed in the roots during the induction of flowering. Data mining of public microarray experiments uncovered that about 200 genes whose mutations are reported to alter flowering time are expressed in the roots (i.e. were detected in more than 50% of the microarrays). However, only a few flowering integrator genes passed the analysis cutoff. Comparison of root transcriptome in short days and during synchronized induction of flowering by a single 22-h long day revealed that 595 genes were differentially expressed. Enrichment analyses of differentially expressed genes in root tissues, gene ontology categories, and cis-regulatory elements converged towards sugar signaling. We concluded that roots are integrated in systemic signaling, whereby carbon supply coordinates growth at the whole plant level during the induction of flowering. This coordination could involve the root circadian clock and cytokinin biosynthesis as a feed forward loop towards the shoot. PMID:27352932

  19. 78 FR 63211 - Privacy Act of 1974; Report of an Altered CMS System of Records Notice

    Science.gov (United States)

    2013-10-23

    ... FR 8538 (February 6, 2013) and amended and published at 78 FR 32256 (May 29, 2013). The alterations... Defense ] (TRICARE), Peace Corps); (3) incarceration status; (4) Indian status; (5) enrollment in employer... sharing ministry; (7) employer information; (8) status as a veteran; (9) pregnancy status; (10)...

  20. 78 FR 47322 - Privacy Act of 1974; Report of an Altered System of Records

    Science.gov (United States)

    2013-08-05

    ... support the NPDB must attend security training, sign a Non-Disclosure Agreement, and sign the Rules of... deleted. The NPDB SORN was last published March 30, 2012 (77 FR 19295). The proposed alterations to the...), Monday through Friday. FOR FURTHER INFORMATION CONTACT: Director, Division of Practitioner Data...

  1. Altered systemic bioavailability and organ distribution of azathioprine in methotrexate-induced intestinal mucositis in rats

    Directory of Open Access Journals (Sweden)

    Sadaf A Karbelkar

    2016-01-01

    Conclusion: Study outcome has thrown light on altered fate of AZA when administered to individuals with mucositis which suggests modified drug therapy. These findings can further be investigated in different drug classes which might be administered concomitantly in mucositis and study outcome can be further confirmed in mucositis patients in clinical practice also.

  2. Contribution of the root system of vetiver grass towards slope stabilization of the São Francisco River

    Directory of Open Access Journals (Sweden)

    Lorena Machado

    2015-08-01

    Full Text Available The control of soil erosion along the banks of the São Francisco River requires the use of efficient and economically viable strategies. Soil bioengineering techniques may be an alternative to the conventional methods as they provide good soil stabilization by mechanical reinforcement promoted by the roots. The objective of this study was to evaluate the contribution of the root cohesion of vetiver grass (Chrysopogon zizanioides (L. Roberty on slope stabilization in erosion control along the right margin of the São Francisco river. Seedlings of vetiver grass were planted in the riverbank of the Lower São Francisco located in Sergipe State, northeast Brazil, and plants were sampled after two years of growth to evaluate the effect of grass on the shear strength of the soil. The monolith and cylinder method was used to collect roots for the evaluation of Root Density (RL, Root Length Density (RLD, Root Area Ratio (RAR, Root Tensile Strength (TR, and Root Cohesion (CR. Data were submitted to analysis of variance (p < 0.05, with polynomial regression analysis. The results show that for RL, RLD, and RAR, the layers of soil at depths of 0-0.10 m had the highest values of 4.84 kg m-3, 12.45 km m-3, 1.66%, respectively. The mean TR was 83 MPa and CR was 528 kPa. Vetiver increases shear strength of the soil and slope stabilization.

  3. Fate of polycyclic aromatic hydrocarbons in plant-soil systems: Plant responses to a chemical stress in the root zone

    Energy Technology Data Exchange (ETDEWEB)

    Hoylman, A.M. [Tennessee Univ., Knoxville, TN (United States). Dept. of Ecology; Walton, B.T. [Oak Ridge National Lab., TN (United States)

    1994-01-01

    Under laboratory conditions selected to maximize root uptake, plant tissue distribution of PAH-derived {sup 14}C was largely limited to root tissue of Malilotus alba. These results suggest that plant uptake of PAHs from contaminated soil via roots, and translocation to aboveground plant tissues (stems and leaves), is a limited mechanism for transport into terrestrial food chains. However, these data also indicate that root surface sorption of PAHs may be important for plants grown in soils containing elevated concentration PAHs. Root surface sorption of PAHs may be an important route of exposure for plants in soils containing elevated concentrations of PAHS. Consequently, the root-soil interface may be the site of plant-microbial interactions in response to a chemical stress. In this study, evidence of a shift in carbon allocation to the root zone of plants exposed to phenanthrene and corresponding increases in soil respiration and heterotrophic plate counts provide evidence of a plant-microbial response to a chemical stress. The results of this study establish the importance of the root-soil interface for plants growing in PAH contaminated soil and indicate the existence of plant-microbial interactions in response to a chemical stress. These results may provide new avenues of inquiry for studies of plant toxicology, plant-microbial interactions in the rhizosphere, and environmental fates of soil contaminants. In addition, the utilization of plants to enhance the biodegradation of soil contaminants may require evaluation of plant physiological changes and plant shifts in resource allocation.

  4. Where to find the roots of innovative: relationship between innovation and environmental management system

    Directory of Open Access Journals (Sweden)

    K.I. Sotnikova

    2013-04-01

    Full Text Available The main and decisive factor in the success of the  institutional environment for innovation in the creation of the organization is its control system, introduced in turn a set of elements such as the philosophy of the organization  and its corporate culture, its principles and used by tools and techniques. A common feature characteristic of the control system best known for its innovative companies, is toappeal to internal staff incentives: the desire for autonomy, the desire for mastery / perfection and the desire to follow the ultimate goal, purpose  of  the  organization.  In  contrast,  traditional  systems  management  features  hierarchy,  centralization  of  decision-making,  strict control and functionality as a consequence, the lack of motivation among employees to self-improvement and development. To improve the innovative capacity to understand the internal limits that are specified existing control system,  and begin the transformation of the system, aimed at creating an innovative environment of the organization through the opening of creative personnel of its staff.

  5. Soil Warming Alters the Nitrogen Cycle: Ecosystem Implications and Feedbacks to the Climate System

    Science.gov (United States)

    Butler, S. M.; Melillo, J. M.; Johnson, J. E.; Mohan, J. E.; Steudler, P. A.; Bowles, F. P.

    2008-12-01

    Increases in soil temperatures associated with global warming have the potential to accelerate nitrogen turnover in soils, which could alter other biogeochemical processes and eventually affect the structure of these forests. Over the past five years we have been studying soil and plant responses to soil warming in large plots in a deciduous stand at Harvard Forest in central Massachusetts. We have heated the soil 5°C above ambient and measured nitrogen cycling parameters including in situ net nitrogen mineralization and nitrification, nitrogen leaching and nitrous oxide (N2O) fluxes. We have also measured various aspects of the carbon cycle including soil respiration and carbon accumulation in vegetation. Over the first five years of the study, we observed a mean annual increase in the net nitrogen mineralized in the warmed plot of 23.8 kg N ha-1. While nitrification rates were low throughout the five years in the control plot, they increased in the warmed plot to account for over 25% of the total net nitrogen mineralized in year five. The increase in nitrogen mineralization stimulated tree growth and carbon storage in woody tissue in the warmed plot. The increased carbon storage in the trees compensated for more than half of the carbon lost from the soils due to accelerated decay of soil organic matter and so reduced the magnitude of the positive feedback to the climate system due to soil warming. We hypothesize that the increase in nitrification we observed will eventually "open" the nitrogen cycle and make gaseous and solution losses more likely. To date, however, we have measured no major losses of nitrous oxide or solution losses of nitrate in response to soil warming. Trees with the capacity to use nitrate may have a competitive advantage in a warmer world. Nitrate-using plants have an inducible enzyme that transforms nitrate to ammonium, a key building block for producing essential amino acids and proteins. Studies by our research group and by others have

  6. Angiotensin II type 1 receptors and systemic hemodynamic and renal responses to stress and altered blood volume in conscious rabbits

    Directory of Open Access Journals (Sweden)

    RogerGeorgeEvans

    2011-07-01

    Full Text Available We examined how systemic blockade of type 1 angiotensin (AT1- receptors affects reflex control of the circulation and the kidney. In conscious rabbits, the effects of candesartan on responses of systemic and renal hemodynamics and renal excretory function to acute hypoxia, mild hemorrhage and plasma volume expansion were tested. Candesartan reduced resting mean arterial pressure (MAP, -8 ± 2% without significantly altering cardiac output (CO, increased renal blood flow (RBF, +38 ± 9% and reduced renal vascular resistance (RVR, -32 ± 6%. Glomerular filtration rate (GFR was not significantly altered but sodium excretion (UNa+V increased four-fold. After vehicle treatment, hypoxia (10% inspired O2 for 30 min did not significantly alter MAP or CO, but reduced HR (-17 ± 6%, increased RVR (+33 ± 16% and reduced GFR (-46 ± 16% and UNa+V (-41 ± 17%. Candesartan did not significantly alter these responses. After vehicle treatment, plasma volume expansion increased CO (+35 ± 7%, reduced total peripheral resistance (TPR, -26 ± 5%, increased RBF (+62 ± 23% and reduced RVR (-32 ± 9%, but did not significantly alter MAP or HR. It also increased UNa+V (803 ± 184% yet reduced GFR (-47 ± 9%. Candesartan did not significantly alter these responses. After vehicle treatment, mild hemorrhage did not significantly alter MAP but increased HR (+16 ± 3%, reduced CO (-16 ± 4% and RBF (-18 ± 6%, increased TPR (+18 ± 4% and tended to increase RVR (+18 ± 9%, P = 0.1, but had little effect on GFR or UNa+V. But after candesartan treatment MAP fell during hemorrhage (-19 ± 1%, while neither TPR nor RVR increased, and GFR (-64 ± 18% and UNa+V (-83 ± 10% fell. AT1-receptor activation supports MAP and GFR during hypovolemia. But AT1-receptors appear to play little role in the renal vasoconstriction, hypofiltration and antinatriuresis accompanying hypoxia, or the systemic and renal vasodilatation and natriuresis accompanying plasma volume expansion.

  7. Transgender women and the sex work industry: roots in systemic, institutional, and interpersonal discrimination.

    Science.gov (United States)

    Nadal, Kevin L; Davidoff, Kristin C; Fujii-Doe, Whitney

    2014-01-01

    Because transgender people face discrimination on systemic, institutional, and interpersonal levels, the previous literature has supported that many transgender women view the sex work industry as their only viable career option. The current article reviews the literature on discrimination against transgender people, explores how discrimination influences their participation in sex work, and discusses how institutional discrimination against transgender women manifests within the criminal justice system. Furthermore, recommendations are provided for advocating for the rights of transgender people while promoting healthy behaviors and higher quality of life. Throughout the article, quotes from previous qualitative research are used to illustrate the experiences of transgender women through their own voices and perspectives. PMID:24313294

  8. Physarum Polycephalum Syllogistic L-Systems and Judaic Roots of Unconventional Computing

    Directory of Open Access Journals (Sweden)

    Schumann Andrew

    2016-03-01

    Full Text Available We show that in Kabbalah, the esoteric teaching of Judaism, there were developed ideas of unconventional automata in which operations over characters of the Hebrew alphabet can simulate all real processes producing appropriate strings in accordance with some algorithms. These ideas may be used now in a syllogistic extension of Lindenmayer systems (L-systems, where we deal also with strings in the Kabbalistic-Leibnizean meaning. This extension is illustrated by the behavior of Physarum polycephalum plasmodia which can implement, first, the Aristotelian syllogistic and, second, a Talmudic syllogistic by qal wa-homer.

  9. Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems

    NARCIS (Netherlands)

    Mohanraju, Prarthana; Makarova, Kira S.; Zetsche, Bernd; Zhang, Feng; Koonin, Eugene V.; Oost, van der John

    2016-01-01

    Adaptive immunity had been long thought of as an exclusive feature of animals. However, the discovery of the CRISPR-Cas defense system, present in almost half of prokaryotic genomes, proves otherwise. Because of the everlasting parasite-host arms race, CRISPR-Cas has rapidly evolved through horiz

  10. Nutrient Enrichment Effects on Roots, Rhizomes, and Peat in a System Dominated by Sediment Depositional Processes

    Science.gov (United States)

    We examined belowground structure in coastal marshes of the North Inlet Winyah Bay system, a National Estuarine Research Reserve (NERR) in South Carolina, USA. In this observational study we included the Debidue Creek (located approximately 1 km south of a 40 year old residential...

  11. Long term alteration of glass/iron systems in anoxic conditions: contribution of archaeological analogues to the study of mechanisms

    International Nuclear Information System (INIS)

    The knowledge of glass alteration mechanisms arouses a great interest over the last decades, particularly in the nuclear field, since vitrification is used to stabilize high-level radioactive wastes in many countries. In the French concept, these nuclear glasses would be stored in geological repositories. This multi-barrier system (glass matrix, stainless steel container, low carbon steel over-container, geological barrier) must ensure the durable confinement of radionuclides. But laboratory experiments do not permit to predict directly the behaviour of these materials over typically a million-year timescale and the extrapolation of short-term laboratory data to long time periods remains problematic. Part of the validation of the predictive models relies on natural and archaeological analogues. Here, the analogues considered are vitreous slags produced as wastes by a blast furnace working during the 16. century in the iron making site of Glinet (Normandy, France). The choice of these specific artefacts is due to the presence of particular interface between corrosion products and glass matrix inside the blocks. Thus, they can help us to understand the influence of iron corrosion products from the steel containers on the glass alteration mechanisms and kinetics. A first part of this work concerns the characterization of the archaeological artefacts especially the interfacial area between glass and corrosion products inside cracks using micro and nano-beam techniques ( Raman spectroscopy, FEG-SEM, TEM, STXM...). This study has enabled to suggest an alteration process with different geochemical steps that leads to alteration profile observed. One of these steps is the precipitation of an iron silicate phase. In a second time, leaching experiments were set up on a synthetic glass of similar composition than the archaeological one to understand the first stages of alteration with and without iron. Two phenomena can be observed: silicon sorption and precipitation of iron

  12. Long-lasting alterations in the immune system of Chernobyl accident victims: manifestations, nature and possible consequences

    International Nuclear Information System (INIS)

    The hypothesis is formulated, which explains genesis of long-lasting disturbances in the immune system of the persons affected by factors of Chernobyl disaster. Immunological alterations which are displayed at the late time after action of radiation in doses 0.5 Gy or lower are not a result of direct damage of the cells of immune system by irradiation. Their development is more probably a result of appearance of some systemic conditions and factors in affected organism - such as hormonal disbalance and especially autoantibodies of different specificities, including those reactive with thymic epithelial cells. Refs. 60, refs. 5

  13. A digital photography and analysis system for estimation of root and shoot development in rice weed suppression studies in the field

    Science.gov (United States)

    Rice germplasm with an inherent ability to suppress weeds can potentially improve the economics and sustainability of weed control in rice. We devised a simple, rapid, and inexpensive digital imaging system to quantify several shoot and root growth characteristics in field-grown rice plants that ha...

  14. Rubidium mobility in the apple-tree and autoradiography as an aid in measuring the distribution and spread of the root-system

    International Nuclear Information System (INIS)

    Investigations were made on the usability of rubidium-86 for measuring the distribution and spread of the root system of fruit trees. The tracer techniques developed so far in horticulture are not applicable for various reasons. Therefore, a new method of autoradiography was developed. The results of the preliminary investigations are very promising

  15. Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems.

    Science.gov (United States)

    Mohanraju, Prarthana; Makarova, Kira S; Zetsche, Bernd; Zhang, Feng; Koonin, Eugene V; van der Oost, John

    2016-08-01

    Adaptive immunity had been long thought of as an exclusive feature of animals. However, the discovery of the CRISPR-Cas defense system, present in almost half of prokaryotic genomes, proves otherwise. Because of the everlasting parasite-host arms race, CRISPR-Cas has rapidly evolved through horizontal transfer of complete loci or individual modules, resulting in extreme structural and functional diversity. CRISPR-Cas systems are divided into two distinct classes that each consist of three types and multiple subtypes. We discuss recent advances in CRISPR-Cas research that reveal elaborate molecular mechanisms and provide for a plausible scenario of CRISPR-Cas evolution. We also briefly describe the latest developments of a wide range of CRISPR-based applications. PMID:27493190

  16. Comparative efficiency of final endodontic cleansing procedures in removing a radioactive albumin from root canal systems

    International Nuclear Information System (INIS)

    Fifty-six teeth were initially instrumented, with the use of seven irrigants or irrigant combinations, and filled with radioactive albumin. The study then showed the relative ability of three final endodontic procedures (copious reirrigation with saline solution, drying with paper points, and reassuring patency of the canal with the final instrument) to remove the albumin. Even after copious irrigation, each additional procedure removed statistically significant amounts of albumin. Alternating an organic solvent and an inorganic solvent did appear to leave the canal system in the optimal condition for final cleansing procedures. The study then correlated the relative efficiency of irrigation alone versus instrumentation plus irrigation in removing the remaining albumin from the canal systems. Reinstrumentation plus copious irrigation removed significantly more albumin than copious irrigation alone

  17. Retaining rooted operations capabilities in footloose supply networks – the system cluster configuration

    DEFF Research Database (Denmark)

    Søberg, Peder Veng; Wæhrens, Brian Vejrum

    2014-01-01

    Original Equipment Manufacturer (OEM) customers feel a need to realize the benefits of outsourcing, while maintaining the development force, which can easily be lost, if too much is outsourced. The paper illustrates the innovative value chain configuration “system cluster”, in which suppliers and...... subcontractors (2. Tier suppliers) get more responsibility and influence, while the OEM customers get the benefits of outsourcing without losing development force. Barriers to reap these benefits are outlined....

  18. A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

    OpenAIRE

    Ramona Marasco; Eleonora Rolli; Besma Ettoumi; Gianpiero Vigani; Francesca Mapelli; Sara Borin; Abou-Hadid, Ayman F.; El-Behairy, Usama A.; Claudia Sorlini; Ameur Cherif; Graziano Zocchi; Daniele Daffonchio

    2012-01-01

    BACKGROUND: Traditional agro-systems in arid areas are a bulwark for preserving soil stability and fertility, in the sight of "reverse desertification". Nevertheless, the impact of desert farming practices on the diversity and abundance of the plant associated microbiome is poorly characterized, including its functional role in supporting plant development under drought stress. METHODOLOGY/PRINCIPAL FINDINGS: We assessed the structure of the microbiome associated to the drought-sensitive pepp...

  19. Evaluation of Biomass Yield and Water Treatment in Two Aquaponic Systems Using the Dynamic Root Floating Technique (DRF

    Directory of Open Access Journals (Sweden)

    Laura Silva

    2015-11-01

    Full Text Available The experiment evaluates the food production and water treatment of TAN, NO2−–N, NO3−–N, and PO43− in two aquaponics systems using the dynamic root floating technique (DRF. A separate recirculation aquaculture system (RAS was used as a control. The fish cultured was Nile tilapia (Oreochromis niloticus. The hydroponic culture in one treatment (PAK was pak choy (Brassica chinensis, and in the other (COR coriander (Coriandrum sativum. Initial and final weights were determined for the fish culture. Final edible fresh weight was determined for the hydroponic plant culture. TAN, NO2−–N, NO3−–N, and PO43− were measured in fish culture and hydroponic culture once a week at two times, morning (9:00 a.m. and afternoon (3:00 p.m.. The fish biomass production was not different in any treatment (p > 0.05 and the total plant yield was greater (p < 0.05 in PAK than in COR. For the hydroponic culture in the a.m., the PO43− was lower (p < 0.05 in the PAK treatment than in COR, and in the p.m. NO3−–N and PO43− were lower (p < 0.05 in PAK than in COR. The PAK treatment demonstrated higher food production and water treatment efficiency than the other two treatments.

  20. Cell Cycle Control and Adhesion Molecule Expression in Cells of the Immune System are Sensitive to Altered Gravity

    Science.gov (United States)

    Ullrich, O.; Paulsen, K.; Thiel, C.; Herrmann, K.; Sang, C.; Han, G.; Hemmersbach, R.; von der Wiesche, M.; Kroll, H.; Zhuang, F.; Grote, K. H.; Cogoli, A.; Zipp, F.; Engelmann, F.

    2008-06-01

    Life on earth developed in the presence and under the constant influence of gravity. Thus, it is a fundamental biological question, whether gravity is required for cellular functions and signal transduction in mammalian cells. Since the first Spacelab-Mission 20 years ago, it is known that activation and function of T lymphocytes is severely suppressed in microgravity, but the underlying molecular mechanisms are not elucidated. Experiments have been performed using ground-based facilities such as fast-rotating clinostat and hyper-g-centrifuges, and real microgravity provided by parabolic flights. We found that 1.) cells of the immune system responded cell type specifically to altered gravity, 2.) microgravity induced a multitude of initial alterations in signal transduction, whereas 3.) hypergravity of 1.8g did not induce any changes of the pathways tested, and that 4.) most of the initially altered pathways in microgravity adapted to "normal" levels within 15min. However, some pathways remained altered and could explain cell cycle arrest of T lymphocytes as observed in several long-term space experiments.

  1. Genetic dissection of maize seedling root system architecture traits using an ultra-high density bin-map and a recombinant inbred line population

    Institute of Scientific and Technical Information of China (English)

    Weibin Song; Baobao Wang; Andrew L Hauck; Xiaomei Dong; Jieping Li; Jinsheng Lai

    2016-01-01

    Maize (Zea mays) root system architecture (RSA) mediates the key functions of plant anchorage and acquisition of nutrients and water. In this study, a set of 204 recombinant inbred lines (RILs) was derived from the widely adapted Chinese hybrid ZD958(Zheng58 ? Chang7-2), genotyped by sequencing (GBS) and evaluated as seedlings for 24 RSA related traits divided into primary, seminal and total root classes. Significant differences between the means of the parental phenotypes were detected for 18 traits, and extensive transgressive segregation in the RIL population was observed for all traits. Moderate to strong relationships among the traits were discovered. A total of 62 quantitative trait loci (QTL) were identified that individually explained from 1.6% to 11.6% (total root dry weight/total seedling shoot dry weight) of the phenotypic variation. Eighteen, 24 and 20 QTL were identified for primary, seminal and total root classes of traits, respectively. We found hotspots of 5, 3, 4 and 12 QTL in maize chromosome bins 2.06, 3.02-03, 9.02-04, and 9.05-06, respectively, implicating the presence of root gene clusters or pleiotropic effects. These results characterized the phenotypic variation and genetic architecture of seedling RSA in a population derived from a successful maize hybrid.

  2. Regulation of Sucrose and Zinc on Root System Growth in Rice%蔗糖和锌对水稻根系生长的调节

    Institute of Scientific and Technical Information of China (English)

    张承仁; 徐小利; 冯永永; 刘乐雨; 冯婷婷; 陈振华; 蔡凤香; 赵凤云

    2012-01-01

    [Objective] The aim was to study the relationship between urcrose, zinc and the root system growth in rice. [Method] Changes of root system growth, ROS generation and root system proton export ability were analyzed in rice (Oryza sativa L. cv Zhonghua No.11) treated with different concentrations of Zn (NO3)3 sucrose, com- bined sucrose and Zn (NO3)3 mannitol as well as mannitol plus Zn (NO3)2. [Result] The results showed that treatment with 1-3 mM Zn(NO3)2 resulted in significant increases in total root length /number and in accumulation of H202 and 02- but decreases in root system proton export ability. With the exception of shoot length, the length of primary, adventitious, and lateral roots, and the number of adventitious, and lateral roots on primary /adventitious roots were all influenced by different concentrations of sucrose. High concentrations of sucrose caused increases in H202 and O2-, starva- tion or high concentrations of sucrose reduced root system proton export ability after treating with or without Zn. However, at the same concentration of sucrose, different changes of these indicators were observed between Zn and non-Zn treatments. The regulation of root system growth induced by sucrose was marked different from that of mannitol at the same concentration of 5%, suggesting that these effects were caused by sugar signal but not by osmotic potential. [Conclusion] This study indicat- ed that both sucrose and Zn play important roles in the regulation of rice root system growth.%【目的】研究锌和蔗糖与水稻根系生长发育的关系。【方法]以水稻中花11号为试验材料,分析了不同浓度的锌、蔗糖、甘露醇、锌+蔗糖和锌+甘露醇处理条件下水稻根系生长、活性氧产生和根系质子分泌的变化。[结果]在1~3mmol/L范围内随着锌浓度的增加,水稻根系总长度、数量及活性氧的产生均增加,但质子分泌水平降低。除了株高外,初生根

  3. Feynman Diagrams and Rooted Maps

    CERN Document Server

    Prunotto, A; Czerski, P

    2013-01-01

    The {\\em Rooted Maps Theory}, a branch of the Theory of Homology, is shown to be a powerful tool for investigating the topological properties of Feynman diagrams, related to the single particle propagator in the quantum many-body systems. The numerical correspondence between the number of this class of Feynman diagrams as a function of perturbative order and the number of rooted maps as a function of the number of edges is studied. A graphical procedure to associate Feynman diagrams and rooted maps is then stated. Finally, starting from rooted maps principles, an original definition of the {\\em genus of a Feynman diagram}, which totally differs from the usual one, is given.

  4. Removal of root filling materials.

    LENUS (Irish Health Repository)

    Duncan, H.F. Chong, B.S.

    2011-05-01

    Safe, successful and effective removal of root filling materials is an integral component of non-surgical root canal re-treatment. Access to the root canal system must be achieved in order to negotiate to the canal terminus so that deficiencies in the original treatment can be rectified. Since a range of materials have been advocated for filling root canals, different techniques are required for their removal. The management of commonly encountered root filling materials during non-surgical re-treatment, including the clinical procedures necessary for removal and the associated risks, are reviewed. As gutta-percha is the most widely used and accepted root filling material, there is a greater emphasis on its removal in this review.

  5. Root Cause Analysis of the Failure of PORV Downstream Steam Discharging Pipe System Connected to the Main Steam Line

    International Nuclear Information System (INIS)

    On April 16, 2005, the Kori Unit 1 plant was being retrieved from the zero reactor power at the final stage of the 23rd periodic overhaul when manual operation for opening the PORV (Power Operated Relief Valve) was performed at a low speed to reduce the pressure of main steam line with an MSIV (Main Steam Isolation Valve) and 5 MSSVs (Main Steam Safety valves), which remained closed. When the pressure in the main steam line reached about 7.115 MPa and a reactor operator switched the PORV operation mode from 'Manual' to 'Auto' to speed up the pressure reduction process. Immediately after that the PORV opened fully in a short time due to higher pressure beyond the PORV setpoint, which resulted in excessively rapid reduction of pressure in the main steam line system. A little later on, the operator closed the valve manually to mitigate the unexpected transient response of system. Due to the abrupt pressure reduction of steam generator and main steam line caused by the sudden opening of PORV, the reactor shut down by the low pressure signal of safety injection and some main steam separation valves seemed to be actuated. As the result of the rapid release of high pressure steam to the atmosphere through the PORV, the supports for the curved pipe spool of about 3.3 m long and 300 kg weight, which had been connecting the straight pipe line in the downstream of the PORV and a silencer for reducing noise generated by the steam discharging to the atmosphere, were broken away. At the same time, the pipe spool was separated and projected from the line. Finally it flew and collided with the outer wall of the RWST located about 50 m away, resulting in mechanical damage on it with the maximum permanent deformation of about 60 mm in the radial direction at the local part of wall. Although the release of radiation did not occur, it will be meaningful to find out the root-cause of such incident by calculating the transient hydraulic loads resulting in the unwelcome failure of pipe

  6. Environmental and molecular characterization of systems which affect genome alteration in pseudomonas aeruginosa

    International Nuclear Information System (INIS)

    Pseudomonas aeruginosa is used as a model organism to study genome alteration in freshwater microbial populations and horizontal gene transmission by both transduction and conjugation has been demonstrated. The studies have also provided data which suggest that intracellular genome instability may be increased in the aquatic environment as a result of stresses encountered by the cell in this habitat. The role of the P. aeruginosa recA analog in regulating genome instability is also addressed

  7. Pathogenesis of Bone Alterations in Gaucher Disease: The Role of Immune System

    OpenAIRE

    Juan Marcos Mucci; Paula Rozenfeld

    2015-01-01

    Gaucher, the most prevalent lysosomal disorder, is an autosomal recessive inherited disorder due to a deficiency of glucocerebrosidase. Glucocerebrosidase deficiency leads to the accumulation of glucosylceramide primarily in cells of mononuclear-macrophage lineage. Clinical alterations are visceral, hematological, and skeletal. Bone disorder in Gaucher disease produces defects on bone metabolism and structure and patients suffer from bone pain and crisis. Skeletal problems include osteopenia,...

  8. An architectural analysis of the elongation of field-grown sunflower root systems. Elements for modelling the effects of temperature and intercepted radiation

    International Nuclear Information System (INIS)

    The effects of photosynthetic photon flux density (PPFD) and soil temperature on root system elongation rate have been analysed by using an architectural framework. Root elongation rate was analysed by considering three terms, (i) the branch appearance rate, (ii) the individual elongation rates of the taproot and branches and (iii) the proportion of branches which stop elongating. Large ranges of PPFD and soil temperature were obtained in a series of field and growth chamber experiments. In the field, the growth of root systems experiencing day-to-day natural fluctuation of PPFD and temperature was followed, and some of the plants under study were shaded. In the growth chamber, plants experienced contrasting and constant PPFDs and root temperatures. The direct effect of apex temperature on individual root elongation rate was surprisingly low in the range 13–25°C, except for the first days after germination. Root elongation rate was essentially related to intercepted PPFD and to distance to the source, both in the field and in the growth chamber. Branch appearance rate substantially varied among days and environmental conditions. It was essentially linked to taproot elongation rate, as the profile of branch density along the taproot was quite stable. The length of the taproot segment carrying newly appeared branches on a given day was equal to taproot elongation on this day, plus a 'buffering term' which transiently increased if taproot elongation rate slowed down. The proportion of branches which stopped elongating a short distance from the taproot ranged from 50–80% and was, therefore, a major architectural variable, although it is not taken into account in current architectural models. A set of equations accounting for the variabilities in elongation rate, branch appearance rate and proportion of branches which stop elongating, as a function of intercepted PPFD and apex temperature is proposed. These equations apply for both field and growth

  9. The Root Hair Specific SYP123 Regulates the Localization of Cell Wall Components and Contributes to Rizhobacterial Priming of Induced Systemic Resistance.

    Science.gov (United States)

    Rodriguez-Furlán, Cecilia; Salinas-Grenet, Hernán; Sandoval, Omar; Recabarren, Camilo; Arraño-Salinas, Paulina; Soto-Alvear, Sylvana; Orellana, Ariel; Blanco-Herrera, Francisca

    2016-01-01

    Root hairs are important for nutrient and water uptake and are also critically involved the interaction with soil inhabiting microbiota. Root hairs are tubular-shaped outgrowths that emerge from trichoblasts. This polarized elongation is maintained and regulated by a robust mechanism involving the endomembrane secretory and endocytic system. Members of the syntaxin family of SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) in plants (SYP), have been implicated in regulation of the fusion of vesicles with the target membranes in both exocytic and endocytic pathways. One member of this family, SYP123, is expressed specifically in the root hairs and accumulated in the growing tip region. This study shows evidence of the SYP123 role in polarized trafficking using knockout insertional mutant plants. We were able to observe defects in the deposition of cell wall proline rich protein PRP3 and cell wall polysaccharides. In a complementary strategy, similar results were obtained using a plant expressing a dominant negative soluble version of SYP123 (SP2 fragment) lacking the transmembrane domain. The evidence presented indicates that SYP123 is also regulating PRP3 protein distribution by recycling by endocytosis. We also present evidence that indicates that SYP123 is necessary for the response of roots to plant growth promoting rhizobacterium (PGPR) in order to trigger trigger induced systemic response (ISR). Plants with a defective SYP123 function were unable to mount a systemic acquired resistance in response to bacterial pathogen infection and ISR upon interaction with rhizobacteria. These results indicated that SYP123 was involved in the polarized localization of protein and polysaccharides in growing root hairs and that this activity also contributed to the establishment of effective plant defense responses. Root hairs represent very plastic structures were many biotic and abiotic factors can affect the number, anatomy and physiology of

  10. 根系对土壤机械压力影响的模拟试验%Simulation experiment of roots system effects on soil mechanical pressure

    Institute of Scientific and Technical Information of China (English)

    宋自影; 王飞; 胡林; 穆兴民; 康绍忠

    2011-01-01

    为了研究根系对土壤机械压力的大小、分布和影响因素以及各个因素与其相互关系,该研究采用自制的压力测量装置,测定并分析了不同模拟根系对不同体积质量土壤产生的机械压力及其影响因素.试验结果表明:模拟根系对土壤机械压力与根系直径呈极显著(p<0.01)幂函数关系,随着直径增加,根系对土壤的机械压力增加;随着土壤体积质量增加和土层深度增加,根系对土壤机械压力增加;当植株受到风力作用时,随着风力变大,根系对土壤机械压力呈递增变化.模拟研究表明,根系生长可以对土壤产生机械压力,地表风力等扰动力量也可以传递到根系并引起这种机械压力的变化,这种压力可能会对土壤结构和物理行为产生影响,需要进一步深入研究.尽管该文是通过模拟根系进行模拟生长试验,仍然对研究根系生物力学有指导意义.%In order to research effect of roots system on soil mechanical pressure values and distribution and study on relationship between factors and soil mechanical pressure, the mechanical pressure of simulation roots and its influencing factors of the pressure were measured and analyzed under various diameters in different soil layer and soil bulk density respectively with homemade pressure measuring device. The result showed that the relationship between simulation roots on soil mechanical pressure and root diameter was highly significant (p<0.01) as power function, the mechanical pressure of roots on soil increased when the diameter of root increased. When the soil bulk density was the denser and the soil layer was the deeper, the mechanical pressure of roots on soil increased the more greatly. The mechanical pressure of root on soil increased when the power of wind increased. The simulation research showed that root growth could produce mechanical pressure on soil, and surface wind and other disturbance force could be passed to roots

  11. Contribution of Root Traits to Phosphorus Acqusition Efficiency by Maize Landraces in Acid Soils of the Highlands in Central Mexico

    International Nuclear Information System (INIS)

    Plants have a wide range of mechanisms and morphological features that increase availability and acquisition of orthophosphate from soil. Root growth, root branching, and root hair morphology are important for the efficient acquisition of phosphorus (P). The series of studies reported here was based on the hypothesis that Mexican maize landraces, which have developed mostly in environments with low P availability and have a well-developed root system, could be a source of variation for the improvement of phosphorus acquisition. Several studies were conducted to evaluate genotypic variation in both root (root architecture and morphology, including root hairs) and plant growth traits associated with P acquisition efficiency (PAE) and/or P utilization efficiency (PUE) of maize landraces in a P-deficient Andisol in the Central Mexican Highlands, and to identify genotypic differences, among both efficient and inefficient in P acquisition and responsive and non-responsive maize landraces to applied P. The results showed that accessions differed greatly in plant growth, grain yield, root morphology, total uptake of P, PAE, PUE, and P efficiency defined as growth with suboptimal P availability. Phosphorus-efficient accessions had not only greater biomass per unit of absorbed P, but also larger root systems, greater P uptake per unit root weight, more nodal roots, nodal root laterals, and greater root hair density of nodal root main axes and first-order laterals than did Pinefficient accessions under P deficiency. Root biomass allocation, as quantified by the allometric partitioning coefficient (K) was not altered by P availability in the efficient accessions, but inefficient accessions had less biomass partitioning to roots (i.e. a lower K) under low P conditions. Accessions with enhanced nodal rooting and laterals had greater P uptake and growth under low P. Dense root hairs on nodal root main axes and first-order laterals conferred a marked benefit under low P, as

  12. Contribution of the root system of vetiver grass towards slope stabilization of the São Francisco River

    OpenAIRE

    Lorena Machado; Francisco Sandro Rodrigues Holanda; Vanessa Sousa da Silva; Antonio Iury Alves Maranduba; Janisson Bispo Lino

    2015-01-01

    The control of soil erosion along the banks of the São Francisco River requires the use of efficient and economically viable strategies. Soil bioengineering techniques may be an alternative to the conventional methods as they provide good soil stabilization by mechanical reinforcement promoted by the roots. The objective of this study was to evaluate the contribution of the root cohesion of vetiver grass (Chrysopogon zizanioides (L.) Roberty) on slope stabilization in erosion control along th...

  13. [Polyphase character of the dependence of Brassica napus germ root and hypocotyl growth on zeatin and thidiazuron concentrations with view of applicability to biological life support systems].

    Science.gov (United States)

    Komarova, G I; Babosha, A V

    2010-01-01

    Physiologically active substances are considered as a potential component of plant cultivation technologies for biological life support systems. In spacelight, plant reactions to growth-regulating agents may be changed by the specific stress factors such as microgravity, radiation, and trace admixtures in cabin air. Complex character of the concentration dependence of PAS efficiency and consequent variability generate a need to optimize plant growth regulating technologies in order to stabilize the wanted effect. Pattern of the concentration dependence of zeatin and tidiazurone effects on roots and hypocotyls growth was analyzed in rape germs. 24-hour Brassica napus germs grown in the dark in thermostat at 24 degrees C were transferred to Petri dishes with solutions of cytokinins under study for continued incubation under the same conditions for the next 24 hours. Roots and hypocotyls were measured. Zeatin concentration curve for roots was multiphase and, in addition to the general trend towards greater inhibition with increase of phyto-hormone concentration and had clearly defined minimum and maximum. The dependence of root growth inhibition on tidiazurone concentration also was not monotonic and had a distinct similarity with the zeatin curve. Gradual increase of tidiazurone concentration used in combination with zeatin brought about a predictable gradual twist of the zeatin curve; however, in most of the instances no additive cytokinin effect was observed. A supposition can be made that PAS interaction with the phytohormone regulation system may be a factor in variability of activity of these substances. PMID:20799663

  14. The auxin-inducible GH3 homologue Pp-GH3.16 is downregulated in Pinus pinaster root systems on ectomycorrhizal symbiosis establishment.

    Science.gov (United States)

    Reddy, S M; Hitchin, S; Melayah, D; Pandey, A K; Raffier, C; Henderson, J; Marmeisse, R; Gay, G

    2006-01-01

    In an attempt to determine whether auxin-regulated plant genes play a role in ectomycorrhizal symbiosis establishment, we screened a Pinus pinaster root cDNA library for auxin-upregulated genes. This allowed the identification of a cDNA, Pp-GH3.16, which encodes a polypeptide sharing extensive homologies with GH3 proteins of different plants. Pp-GH3.16 was specifically upregulated by auxins and was not affected by cytokinin, gibberellin, abscisic acid or ethylene, or by heat shock, water stress or anoxia. Pp-GH3.16 mRNAs were quantified in pine roots inoculated with two ectomycorrhizal fungi, Hebeloma cylindrosporum and Rhizopogon roseolus. Surprisingly, Pp-GH3.16 was downregulated following inoculation with both fungal species. The downregulation was most rapid on establishment of symbiosis with an indole-3-acetic acid (IAA)-overproducing mutant of H. cylindrosporum, which overproduced mycorrhizas characterized by a hypertrophic Hartig net. This indicates that, despite being auxin-inducible, Pp-GH3.16 can be downregulated on establishment of symbiosis with a fungus that releases auxin. By contrast, Pp-GH3.16 was not downregulated in pine root systems inoculated with a nonmycorrhizal mutant of H. cylindrosporum, suggesting that the downregulation we observed in mycorrhizal root systems was a component of the molecular cross-talk between symbiotic partners at the origin of differentiation of symbiotic structures. PMID:16608463

  15. A New Anatomically Based Nomenclature for the Roots and Root Canals—Part 1: Maxillary Molars

    Directory of Open Access Journals (Sweden)

    Jojo Kottoor

    2012-01-01

    Full Text Available Numerous terminologies have been employed in the dental literature to describe the roots and root canal systems of maxillary molars. This multiplicity in naming of roots and canals makes the reader susceptible to misinterpretation and confusion. No consensus thus far has been arrived at for defining the names of roots and root canals in maxillary molars, including their various morphological aberrations. The anatomical relation of roots and their root canals were identified and were subsequently named based on definite sets of criteria. A new method for identification and naming of roots and root canal anatomy in maxillary molars, based on their root and canal relationship, was formulated and is presented in this paper. The nomenclature makes certain essential modifications to the traditional approach to accommodate naming of the various aberrations presented in the maxillary molars. A simple, yet extensive, nomenclature system has been proposed that appropriately names the internal and external morphology of maxillary molars.

  16. Rhizosphere biophysics and root water uptake

    Science.gov (United States)

    Carminati, Andrea; Zarebanadkouki, Mohsen; Ahmed, Mutez A.; Passioura, John

    2016-04-01

    The flow of water into the roots and the (putative) presence of a large resistance at the root-soil interface have attracted the attention of plant and soil scientists for decades. Such resistance has been attributed to a partial contact between roots and soil, large gradients in soil matric potential around the roots, or accumulation of solutes at the root surface creating a negative osmotic potential. Our hypothesis is that roots are capable of altering the biophysical properties of the soil around the roots, the rhizosphere, facilitating root water uptake in dry soils. In particular, we expect that root hairs and mucilage optimally connect the roots to the soil maintaining the hydraulic continuity across the rhizosphere. Using a pressure chamber apparatus we measured the relation between transpiration rate and the water potential difference between soil and leaf xylem during drying cycles in barley mutants with and without root hairs. The samples were grown in well structured soils. At low soil moistures and high transpiration rates, large drops in water potential developed around the roots. These drops in water potential recovered very slowly, even after transpiration was severely decreased. The drops in water potential were much bigger in barley mutants without root hairs. These mutants failed to sustain high transpiration rates in dry conditions. To explain the nature of such drops in water potential across the rhizosphere we performed high resolution neutron tomography of the rhizosphere of the barleys with and without root hairs growing in the same soil described above. The tomograms suggested that the hydraulic contact between the soil structures was the highest resistance for the water flow in dry conditions. The tomograms also indicate that root hairs and mucilage improved the hydraulic contact between roots and soil structures. At high transpiration rates and low water contents, roots extracted water from the rhizosphere, while the bulk soil, due its

  17. A Novel Ex Ovo Banding Technique to Alter Intracardiac Hemodynamics in an Embryonic Chicken System.

    Science.gov (United States)

    Menon, Vinal; Junor, Lorain; Balhaj, Marwa; Eberth, John F; Potts, Jay D

    2016-01-01

    The new model presented here can be used to understand the influence of hemodynamics on specific cardiac developmental processes, at the cellular and molecular level. To alter intracardiac hemodynamics, fertilized chicken eggs are incubated in a humidified chamber to obtain embryos of the desired stage (HH17). Once this developmental stage is achieved, the embryo is maintained ex ovo and hemodynamics in the embryonic heart are altered by partially constricting the outflow tract (OFT) with a surgical suture at the junction of the OFT and ventricle (OVJ). Control embryos are also cultured ex ovo but are not subjected to the surgical intervention. Banded and control embryos are then incubated in a humidified incubator for the desired period of time, after which 2D ultrasound is employed to analyze the change in blood flow velocity at the OVJ as a result of OFT banding. Once embryos are maintained ex ovo, it is important to ensure adequate hydration in the incubation chamber so as to prevent drying and eventually embryo death. Using this new banded model, it is now possible to perform analyses of changes in the expression of key players involved in valve development and to understand the role of hemodynamics on cellular responses in vivo, which could not be achieved previously. PMID:27213265

  18. Modelling diverse root density dynamics and deep nitrogen uptake

    OpenAIRE

    Pedersen, Anders; Zhang, Kefeng; Thorup-Kristensen, Kristian; Jensen, Lars Stoumann

    2009-01-01

    We present a 2-D model for simulation of root density and plant nitrogen (N) uptake for crops grown in agricultural systems, based on a modification of the root density equation originally proposed by Gerwitz and Page (1974). A root system form parameter was introduced to describe the distribution of root length vertically and horizontally in the soil profile. The form parameter can vary from 0 where root density is evenly distributed through the soil profile, to 8 where practically all roots...

  19. Reconciling root plasticity and architectural ground rules in tree root growth models with voxel automata

    OpenAIRE

    Mulia, Rachmat; Dupraz, Christian; van Noordwijk, Meine

    2010-01-01

    Dynamic models of tree root growth and function have to reconcile the architectural rules for coarse root topology with the dynamics of fine root growth (and decay) in order to predict the strategic plus opportunistic behaviour of a tree root system in a heterogeneous soil. We present an algorithm for a 3D model based on both local (soil voxel level) and global (tree level) controls of root growth, with development of structural roots as a consequence of fine root function, rather than as dri...

  20. Improving crop nutrient efficiency through root architecture modifications.

    Science.gov (United States)

    Li, Xinxin; Zeng, Rensen; Liao, Hong

    2016-03-01

    Improving crop nutrient efficiency becomes an essential consideration for environmentally friendly and sustainable agriculture. Plant growth and development is dependent on 17 essential nutrient elements, among them, nitrogen (N) and phosphorus (P) are the two most important mineral nutrients. Hence it is not surprising that low N and/or low P availability in soils severely constrains crop growth and productivity, and thereby have become high priority targets for improving nutrient efficiency in crops. Root exploration largely determines the ability of plants to acquire mineral nutrients from soils. Therefore, root architecture, the 3-dimensional configuration of the plant's root system in the soil, is of great importance for improving crop nutrient efficiency. Furthermore, the symbiotic associations between host plants and arbuscular mycorrhiza fungi/rhizobial bacteria, are additional important strategies to enhance nutrient acquisition. In this review, we summarize the recent advances in the current understanding of crop species control of root architecture alterations in response to nutrient availability and root/microbe symbioses, through gene or QTL regulation, which results in enhanced nutrient acquisition. PMID:26460087

  1. Altered Alpha-Synuclein, Parkin, and Synphilin Isoform Levels in Multiple System Atrophy Brains

    DEFF Research Database (Denmark)

    Brudek, Tomasz; Winge, Kristian; Bredo Rasmussen, Nadja;

    2016-01-01

    -1 isoforms. In MSA brains, alpha-synuclein140 and alpha-synuclein112 isoform levels were significantly increased,whereas levels of the alpha-synuclein126 isoform were decreased in the substantia nigra, striatum, cerebellar cortex, and nucleus dentatus vs. CONTROLS: Moreover, in MSA cases, we showed...... increased levels of parkin isoforms lacking the N-terminal ubiquitin-like domain and an aggregation-prone synphiln-1A isoform that causes neuronal toxicity in MSA. In PD brains, Parkin transcript variant 3, 7 and 11 were significantly and specifically overexpressed in the striatum and cerebellar cortex......, together with synphilin-1A and 1C. The changes of isoform expression profiles in neurodegenerative diseases suggest alterations in the regulation of transcription and/or splicing events, leading to regional/cellular events that may be important for the highly increased aggregation of alpha-synuclein in the...

  2. Root systems of successional and old-growth forest species and its role on nutrient dynamics within a tropical rainforest in Indonesia

    Energy Technology Data Exchange (ETDEWEB)

    Soedjito, H.

    1990-01-01

    Most studies of nutrient dynamics in tropical rainforest have focused on the above ground portion of forest trees. However, the aim of this dissertation is to demonstrate the root systems also play an important role in nutrient dynamics. Nutrient dynamics, in general, are likely to differ between successional forest and old-growth forest. To test for differences in nutrient uptake between trees of successional and old-growth forests, the author experimentally compared seedlings of six different species by measuring biomass allocation and nutrient concentrations as well as determining spatial patterns of root distribution and the absorption ability of the root systems by usign the [sup 32]P radiotracer technique. Young saplings of ten species from natural habitats were also examined for the same parameters, and the results to determine whether results of the laboratory experiments were consistent with field results. It was found that as seedlings, roots of successional forest species penetrate deeper into the soil and have longer lateral roots than old-growth forest species. Successional forest species also had greater biomass accumulation rates, higher ability to absorb [sup 32]P, and contained higher levels of nutrients than species of old-growth forest. Mycorrhizal associations are suspected to be responsible for the high nutrient concentrations, primarily of P and N, within successional species. Successional forest tree species had more cases of infection by vesicular arbuscular mycorrhizas (VAM), while old-growth forest species were infected by both VAM and ectomycorrhizas. Therefore, successional seedlings can play an important role in conserving released nutrients after disturbance. At the landscape level, successional species together with old-growth species can maintain sustainable nutrient cycling within tropical rainforests.

  3. Rhizobacterial volatiles and photosynthesis-related signals coordinate MYB72 expression in Arabidopsis roots during onset of induced systemic resistance and iron-deficiency responses.

    Science.gov (United States)

    Zamioudis, Christos; Korteland, Jolanda; Van Pelt, Johan A; van Hamersveld, Muriël; Dombrowski, Nina; Bai, Yang; Hanson, Johannes; Van Verk, Marcel C; Ling, Hong-Qing; Schulze-Lefert, Paul; Pieterse, Corné M J

    2015-10-01

    In Arabidopsis roots, the transcription factor MYB72 plays a dual role in the onset of rhizobacteria-induced systemic resistance (ISR) and plant survival under conditions of limited iron availability. Previously, it was shown that MYB72 coordinates the expression of a gene module that promotes synthesis and excretion of iron-mobilizing phenolic compounds in the rhizosphere, a process that is involved in both iron acquisition and ISR signaling. Here, we show that volatile organic compounds (VOCs) from ISR-inducing Pseudomonas bacteria are important elicitors of MYB72. In response to VOC treatment, MYB72 is co-expressed with the iron uptake-related genes FERRIC REDUCTION OXIDASE 2 (FRO2) and IRON-REGULATED TRANSPORTER 1 (IRT1) in a manner that is dependent on FER-LIKE IRON DEFICIENCY TRANSCRIPTION FACTOR (FIT), indicating that MYB72 is an intrinsic part of the plant's iron-acquisition response that is typically activated upon iron starvation. However, VOC-induced MYB72 expression is activated independently of iron availability in the root vicinity. Moreover, rhizobacterial VOC-mediated induction of MYB72 requires photosynthesis-related signals, while iron deficiency in the rhizosphere activates MYB72 in the absence of shoot-derived signals. Together, these results show that the ISR- and iron acquisition-related transcription factor MYB72 in Arabidopsis roots is activated by rhizobacterial volatiles and photosynthesis-related signals, and enhances the iron-acquisition capacity of roots independently of the iron availability in the rhizosphere. This work highlights the role of MYB72 in plant processes by which root microbiota simultaneously stimulate systemic immunity and activate the iron-uptake machinery in their host plants. PMID:26307542

  4. 6-Hydroxydopamine-induced glutathione alteration occurs via glutathione enzyme system in primary cultured astrocytes

    Institute of Scientific and Technical Information of China (English)

    Ji ZHANG; Jun HU; Jian-hua DING; Hong-hong YAO; Gang HU

    2005-01-01

    Aim: To define the role of enzymes involved in glutathione metabolism in 6-hydroxydopamine (6-OHDA)-induced glutathione alteration in primary cultured astrocytes.Methods: Total glutathione (GSx) levels were determined using the modified enzymatic microtiter plate assay.The mRNA levels ofγ-glutamylcysteine synthetase (γGCS), γ-glutamyltransferase (γGT), glutathione peroxidase (GPx), GR (glutathione reductase), and glutathione transferases (GST) were determined using RT-PCR.γGT activity was determined using γGT assay kits.Results: In primary cultured astrocytes, 6-OHDA induced a significant elevation of cellular GSx levels after treatment for 24 h.However, the GSx levels decreased after 24 h and the values were even lower than the value in the control group without 6-OHDA at 48 h.RT-PCR data showed that the mRNA levels of γGCS, the ratelimiting enzyme of γ-L-glutamyl-L-cysteinylglycine (GSH) synthesis, were increased by 6-OHDA after treatment for 24 h and 48 h; the mRNA levels of GPx, GR, and GST did not alter in 6-OHDA-treated astrocytes after treatment for 24 h and 48 h; and 6-OHDA increased the mRNA levels and the activity of γGT after treatment for 48 h,which induced a decrease in GSx levels, despite the up-regulation of γGCS after exposure to 6-OHDA for 48 h.Conclusion: The change in γGCS correlated with the increase in GSH levels induced by 6-OHDA after treatment for 24 h.GSx levels decreased because of increased γGT mRNA levels and γGT activity induced by 6-OHDA after treatment for 48 h.

  5. Altered visual information processing systems in bipolar disorder: evidence from visual MMN and P3

    Directory of Open Access Journals (Sweden)

    Toshihiko eMaekawa

    2013-07-01

    Full Text Available Objective: Mismatch negativity (MMN and P3 are unique ERP components that provide objective indices of human cognitive functions such as short-term memory and prediction. Bipolar disorder (BD is an endogenous psychiatric disorder characterized by extreme shifts in mood, energy, and ability to function socially. BD patients usually show cognitive dysfunction, and the goal of this study was to access their altered visual information processing via visual MMN (vMMN and P3 using windmill pattern stimuli.Methods: Twenty patients with BD and 20 healthy controls matched for age, gender, and handedness participated in this study. Subjects were seated in front of a monitor and listened to a story via earphones. Two types of windmill patterns (standard and deviant and white circle (target stimuli were randomly presented on the monitor. All stimuli were presented in random order at 200-ms durations with an 800-ms inter-stimulus interval. Stimuli were presented at 80% (standard, 10% (deviant, and 10% (target probabilities. The participants were instructed to attend to the story and press a button as soon as possible when the target stimuli were presented. Event-related potentials were recorded throughout the experiment using 128-channel EEG equipment. vMMN was obtained by subtracting standard from deviant stimuli responses, and P3 was evoked from the target stimulus.Results: Mean reaction times for target stimuli in the BD group were significantly higher than those in the control group. Additionally, mean vMMN-amplitudes and peak P3-amplitudes were significantly lower in the BD group than in controls.Conclusions: Abnormal vMMN and P3 in patients indicate a deficit of visual information processing in bipolar disorder, which is consistent with their increased reaction time to visual target stimuli.Significance: Both bottom-up and top-down visual information processing are likely altered in BD.

  6. New theories of root growth modelling

    Science.gov (United States)

    Landl, Magdalena; Schnepf, Andrea; Vanderborght, Jan; Huber, Katrin; Javaux, Mathieu; Bengough, A. Glyn; Vereecken, Harry

    2016-04-01

    In dynamic root architecture models, root growth is represented by moving root tips whose line trajectory results in the creation of new root segments. Typically, the direction of root growth is calculated as the vector sum of various direction-affecting components. However, in our simulations this did not reproduce experimental observations of root growth in structured soil. We therefore developed a new approach to predict the root growth direction. In this approach we distinguish between, firstly, driving forces for root growth, i.e. the force exerted by the root which points in the direction of the previous root segment and gravitropism, and, secondly, the soil mechanical resistance to root growth or penetration resistance. The latter can be anisotropic, i.e. depending on the direction of growth, which leads to a difference between the direction of the driving force and the direction of the root tip movement. Anisotropy of penetration resistance can be caused either by microscale differences in soil structure or by macroscale features, including macropores. Anisotropy at the microscale is neglected in our model. To allow for this, we include a normally distributed random deflection angle α to the force which points in the direction of the previous root segment with zero mean and a standard deviation σ. The standard deviation σ is scaled, so that the deflection from the original root tip location does not depend on the spatial resolution of the root system model. Similarly to the water flow equation, the direction of the root tip movement corresponds to the water flux vector while the driving forces are related to the water potential gradient. The analogue of the hydraulic conductivity tensor is the root penetrability tensor. It is determined by the inverse of soil penetration resistance and describes the ease with which a root can penetrate the soil. By adapting the three dimensional soil and root water uptake model R-SWMS (Javaux et al., 2008) in this way

  7. Hydraulic resistance partitioning between shoot and root system and plant water status of Haloxyolon ammodendron growing at sites of contrasting soil texture

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Hydraulic resistance components and water relations were studied on Haloxyolon ammoden-dron,a small xeric tree,growing at sites significantly differed in soil texture.Soil water content,leaf water potential(ψl),xylem water potential(ψx),root water potential(ψroot),leaf transpiration rate(TR) and stomatal conductance(gs) were measured at the two sites during the growing season of 2005 and 2006.Leaf spe-cific hydraulic resistance(Rplant) during the whole growing season,hydraulic resistance of plants(Rp),shoots(Rshoot) and roots(Rroot) in the August of both years were calculated and expressed on leaf area basis.The results showed the proportion of the hydraulic resistance of the aerial part(Rshoot) to the Rp was the same to the proportion of the hydraulic resistance of the soil part(Rroot) to the Rp,indicating that both parts were equivalent important to plant water hydraulic system from soil to leaf.Positive significant corre-lations were found between Rp and Rroot,suggesting that root hydraulics resistance was a major determinant of plant hydraulic resistance(Rp) and transpiration rate.The integrated effect of stomatal control,hy-draulic regulation and morphology adjustment enabled plants at heavy soil site surviving the extreme water deficit period.

  8. A comparative evaluation of different irrigation activation systems on smear layer removal from root canal: An in-vitro scanning electron microscope study

    Directory of Open Access Journals (Sweden)

    Nishi Singh

    2014-01-01

    Full Text Available Aim: The aim of the following study is to compare the evaluation of different irrigation activation system-F-File, CanalBrush (CB and EndoActivator (EA in removing smear layer from root canal. Materials and Methods: Root canals of eighty single rooted decoronated premolar teeth were instrumented using crown-down technique and then equally divided into four groups on basis of irrigation activation methods used: Without irrigation - control group, irrigation with F-File, CB, EA into Group I, II, III respectively. Samples were then longitudinally sectioned and examined under scanning electron microscope by three qualified observers using score from 1 to 4. Data was analyzed using Statistical Package for Social Sciences (SPSS, version 15.0 (SPSS Inc., Chicago IL at significance level of P ≤ 0.05. Results: Minimum mean score was observed in Group II at coronal, apical locations. Group III had minimum score at middle third. Groups difference in score were found to be significant statistically for all three locations as well as for overall assessment (P < 0.001. Conclusion: CB remove smear layer more efficiently from the root canal than F-File and EA in coronal and apical region.

  9. Short-term exposure of arsenite disrupted thyroid endocrine system and altered gene transcription in the HPT axis in zebrafish

    International Nuclear Information System (INIS)

    Arsenic (As) pollution in aquatic environment may adversely impact fish health by disrupting their thyroid hormone homeostasis. In this study, we explored the effect of short-term exposure of arsenite (AsIII) on thyroid endocrine system in zebrafish. We measured As concentrations, As speciation, and thyroid hormone thyroxine levels in whole zebrafish, oxidative stress (H2O2) and damage (MDA) in the liver, and gene transcription in hypothalamic–pituitary–thyroid (HPT) axis in the brain and liver tissues of zebrafish after exposing to different AsIII concentrations for 48 h. Result indicated that exposure to AsIII increased inorganic As in zebrafish to 0.46–0.72 mg kg−1, induced oxidative stress with H2O2 being increased by 1.4–2.5 times and caused oxidative damage with MDA being augmented by 1.6 times. AsIII exposure increased thyroxine levels by 1.3–1.4 times and modulated gene transcription in HPT axis. Our study showed AsIII caused oxidative damage, affected thyroid endocrine system and altered gene transcription in HPT axis in zebrafish. - Highlights: • 48 h-LC50 value of arsenite (AsIII) was 42 mg L−1 for zebrafish. • AsIII exposure elevated oxidative stress and caused oxidative damage in zebrafish. • AsIII exposure increased the content of thyroid hormone thyroxine. • AsIII exposure altered gene transcription in the HPT axis in zebrafish. - Short-term exposure of arsenite caused oxidative stress, disrupted thyroid endocrine system and altered gene transcription in the HPT axis in Zebrafish

  10. Diagravitropism in corn roots

    Science.gov (United States)

    Leopold, A. C.; Wettlaufer, S. H.

    1988-01-01

    The diagravitropic behavior of Merit corn (Zea mays L.) roots grown in darkness provides an opportunity for comparison of two qualitatively different gravitropic systems. As with positive gravitropism, diagravitropism is shown to require the presence of the root cap, have a similar time course for the onset of curvature, and a similar presentation time. In contrast with positive gravitropism, diagravitropism appears to have a more limited requirement for calcium, for it is insensitive to the elution of calcium by EGTA and insensitive to the subsequent addition of a calcium/EGTA complex. These results are interpreted as indicating that whereas the same sensing system is shared by the two types of gravitropism, separate transductive systems are involved, one for diagravitropism, which is relatively independent of calcium, and one for positive gravitropism, which is markedly dependent on calcium.

  11. Systemic and Vascular Alterations in Rat models Exposed to Libby Amphibole

    Science.gov (United States)

    Acute pulmonary injury and chronic diseases can impact systemic vasculature and extra pulmonary organ systems due to the hemodynamic properties of the pulmonary capillary network that allows mediators to release into the circulation. Exposure to Libby amphibole (LA) is associated...

  12. Sensitivity of the "Root Bundle Model" to root mechanical properties and root distribution: Implication for shallow landslide stability.

    Science.gov (United States)

    Schwarz, Massimiliano; Giadrossich, Filippo; Cohen, Denis

    2015-04-01

    Root reinforcement is recognized as an important factor for shallow landslides stability. Due to the complexity of root reinforcement mechanisms and the heterogeneity of the root-soil system, the estimation of parameters used in root reinforcement models is difficult, time consuming, and often highly uncertain. For practical applications, it is necessary to focus on the estimation of the most relevant parameters. The objective of the present contribution is to review the state of the art in the development of root reinforcement models and to discuss the sensitivity of the "Root Bundle Model" (RBM) when considering the variability of root mechanical properties and the heterogeneity of root distributions. The RBM is a strain-step loading fiber bundle model extended to include the mechanical and geometrical properties of roots. The model allows the calculation of the force-displacement behavior of a root bundle. In view of new results of field pullout tests performed on coarse roots of spruce (Picea abies) and considering a consistent dataset of root distribution of alpine tree species, we quantify the sensitivity of the RBM and the uncertainty associated with the most important input parameters. Preliminary results show that the extrapolation of force-diameter values from incomplete datasets (i.e., when only small roots are tested and values for coarse roots are extrapolated) may result in considerable errors. In particular, in the case of distributions with root diameters larger than 5 mm, root reinforcement tends to be dominated by coarse roots and their mechanical properties need to be quantified. In addition to the results of the model sensitivity, we present a possible best-practice method for the quantification of root reinforcement in view of its application to slope stability calculations and implementations in numerical models.

  13. Assessment Using AutoCAD Software of the Preparation of Dentin Walls in Root Canals Produced by 4 Different Endodontic Instrument Systems

    Directory of Open Access Journals (Sweden)

    Cristina Cabanillas

    2015-01-01

    Full Text Available Objectives. To compare the effectiveness of four instrument systems for preparing oval root canals: manual instrumentation (Step-Back technique, ProTaper Universal, ProTaper Next, and Wave One. Material and Methods. For the purpose of this assessment, 60 teeth extracted for orthodontic or periodontal reasons, specifically canines and premolars with full coronal and root anatomy, were used and 15 samples were assigned to each group. The section of the canals was compared before and after instrumenting and the section of untouched canal wall was measured using AutoCAD software. The data was analysed by means of Shapiro-Wilk, ANOVA, and Kruskal-Wallis tests. Results. In the apical third, 100% of the canals were prepared with all the systems. In the middle third, a p value of 0.5989 in the Kruskal-Wallis test was obtained, which indicates no significant difference between the groups. At the coronal third level, the results obtained revealed that Wave One had a significantly lower mean average than the rest (p<0.05. Conclusions. There are no differences between the various root canal instrument systems in the apical and middle thirds. At the coronal third level, Wave One system showed performance significantly worse than the rest, among which there were no differences.

  14. Assessment Using AutoCAD Software of the Preparation of Dentin Walls in Root Canals Produced by 4 Different Endodontic Instrument Systems.

    Science.gov (United States)

    Cabanillas, Cristina; Monterde, Manuel; Pallarés, Antonio; Aranda, Susana; Montes, Raquel

    2015-01-01

    Objectives. To compare the effectiveness of four instrument systems for preparing oval root canals: manual instrumentation (Step-Back technique), ProTaper Universal, ProTaper Next, and Wave One. Material and Methods. For the purpose of this assessment, 60 teeth extracted for orthodontic or periodontal reasons, specifically canines and premolars with full coronal and root anatomy, were used and 15 samples were assigned to each group. The section of the canals was compared before and after instrumenting and the section of untouched canal wall was measured using AutoCAD software. The data was analysed by means of Shapiro-Wilk, ANOVA, and Kruskal-Wallis tests. Results. In the apical third, 100% of the canals were prepared with all the systems. In the middle third, a p value of 0.5989 in the Kruskal-Wallis test was obtained, which indicates no significant difference between the groups. At the coronal third level, the results obtained revealed that Wave One had a significantly lower mean average than the rest (p < 0.05). Conclusions. There are no differences between the various root canal instrument systems in the apical and middle thirds. At the coronal third level, Wave One system showed performance significantly worse than the rest, among which there were no differences. PMID:26664361

  15. Depression has a Strong Relationship to Alterations in the Immune, Endocrine and Neural System

    OpenAIRE

    Hestad, Knut A.; Aukrust, Pål; Tønseth, Sverre; Reitan, Solveig Klæbo

    2009-01-01

    Epidemiological findings indicate a connection between depressive symptoms and changes in status of the immune system in depressed patients. This raises the possibility of causative connections. Theories on mechanisms for interactions between immune and affective systems – directly and via endocrine system – are evolving. Such hypothesized causative connections are supported by several findings. First, in depressed patients changes in the status of the immune system in vivo and ex vivo are se...

  16. 75 FR 34755 - Privacy Act; Proposed Alteration to Existing Systems of Records, Single Family Mortgage Asset...

    Science.gov (United States)

    2010-06-18

    ..., second and subordinate note and mortgage loan servicing functions. Title 5 U.S.C. 552a(e)(4) and (11... note and mortgage loan servicing functions. The SMART System is a comprehensive loan servicing system.../HS-58. The SMART system is utilized for accounting level detail on forward and reverse...

  17. Comparative evaluation of cone-beam CT equipment with micro-CT in the visualization of root canal system

    Directory of Open Access Journals (Sweden)

    Bence Tamas Szabo

    2012-01-01

    Full Text Available The aim of this study was to compare three different cone-beam CT (CBCT instruments used in dental clinical practice with micro-CT as gold standard. Three female monkeys’ (Macaca fascicularis skulls were selected and scanned by the tested CBCT-s. The most apical visible root canal level on the CBCT images was used as reference level (RL. After the image acquisition by CBCT-s dental jaw sections were scanned by micro-CT at a resolution of 17 μm. Out of the left second and third molars 25 root canals were selected and analysed by three observers at RL and following cross sectional parameters were determined: area of the lumen, major and minor diameters, aspect ratio and mean thickness. Results suggest that only high resolution CBCT instruments allow dentists detecting the full length of the root canal.

  18. Application of glutathione to roots selectively inhibits cadmium transport from roots to shoots in oilseed rape

    Science.gov (United States)

    Nakamura, Shin-ichi

    2013-01-01

    Glutathione is a tripeptide involved in various aspects of plant metabolism. This study investigated the effects of the reduced form of glutathione (GSH) applied to specific organs (source leaves, sink leaves, and roots) on cadmium (Cd) distribution and behaviour in the roots of oilseed rape plants (Brassica napus) cultured hydroponically. The translocation ratio of Cd from roots to shoots was significantly lower in plants that had root treatment of GSH than in control plants. GSH applied to roots reduced the Cd concentration in the symplast sap of root cells and inhibited root-to-shoot Cd translocation via xylem vessels significantly. GSH applied to roots also activated Cd efflux from root cells to the hydroponic solution. Inhibition of root-to-shoot translocation of Cd was visualized, and the activation of Cd efflux from root cells was also shown by using a positron-emitting tracer imaging system (PETIS). This study investigated a similar inhibitory effect on root-to-shoot translocation of Cd by the oxidized form of glutathione, GSSG. Inhibition of Cd accumulation by GSH was abolished by a low-temperature treatment. Root cells of plants exposed to GSH in the root zone had less Cd available for xylem loading by actively excluding Cd from the roots. Consequently, root-to-shoot translocation of Cd was suppressed and Cd accumulation in the shoot decreased. PMID:23364937

  19. Root, soil water and nitrogen dynamics in a catch crop-soil system in the Wageningen Rhizolab.

    OpenAIRE

    Dam, van, P.H.A.; Leffelaar, P. A.

    1998-01-01

    Catch crops (winter rye [Secale cereale] and fodder radish [Raphanus sativus]) were grown on lysimeters with rhizotron facilities in Wageningen, Netherlands, from September-March (1993-94) and August-March (1994-95) in order to study root growth and water and nitrogen dynamics under different regimes of irrigation and N supply. Catch crops took up 20-30 g N/msuperscript 2, of which 37-48% was present in dead leaves in March. Rooting depth increased by 2.6 cm/day for both species at the start ...

  20. Fertilization at planting impairs root system development and drought avoidance of Douglas-fir (Pseudotsuga menziesii) seedlings

    OpenAIRE

    Jacobs, Douglass; Rose, Robin; Haase, Diane; Alzugaray, Patricio

    2004-01-01

    International audience Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) seedlings (1 + 1 bareroot) were divided into 8-13 cm3 and 23-35 cm3 initial root-volume categories and either not fertilized or fertilized with 60 g Apex® in the planting hole at a drought-prone clearcut site in the Oregon Coast Range, USA. Regardless of initial root volume, fertilized seedlings consistently reached lower predawn xylem water potential ($\\Psi$xylem) values than non-fertilized seedlings during summer. ...

  1. Rhizobacterial volatiles and photosynthesis-related signals coordinate MYB72 expression in Arabidopsis roots during onset of induced systemic resistance and iron-deficiency responses

    OpenAIRE

    2015-01-01

    In Arabidopsis roots, the transcription factor MYB72 plays a dual role in the onset of rhizobacteria-induced systemic resistance (ISR) and plant survival under conditions of limited iron availability. Previously, it was shown that MYB72 coordinates the expression of a gene module that promotes synthesis and excretion of iron-mobilizing phenolic compounds in the rhizosphere, a process that is involved in both iron acquisition and ISR signaling. Here, we show that volatile organic compounds (VO...

  2. Leaf vegetables for use in integrated hydroponics and aquaculture systems: Effects of root flooding on growth, mineral composition and nutrient uptake

    OpenAIRE

    Trang, Ngo Thuy Diem; Schierup, Hans-Henrik; Brix, Hans

    2010-01-01

    In recirculating aquaculture and hydroponics systems, the waste products from fish production are used to produce vegetables or other crops of economic value, and the water is recirculated to the fish tanks. We studied growth, productivity and nutrient uptake of four leaf vegetable species (Lactuca sativa, Ipomoea aquatica, Brassica rapa var. chinensis and Brassica rapa var. parachinensis) in a controlled growth experiment with three root flooding treatments (drained, half-flooded and flooded...

  3. Effects of fine root length density and root biomass on soil preferential flow in forest ecosystems

    Directory of Open Access Journals (Sweden)

    Yinghu Zhang

    2015-04-01

    Full Text Available Aim of study: The study was conducted to characterize the impacts of plant roots systems (e.g., root length density and root biomass on soil preferential flow in forest ecosystems. Area of study: The study was carried out in Jiufeng National Forest Park, Beijing, China. Material and methods: The flow patterns were measured by field dye tracing experiments. Different species (Sophora japonica Linn,Platycladus orientalis Franco, Quercus dentata Thunbwere quantified in two replicates, and 12 soil depth were applied. Plant roots were sampled in the sieving methods. Root length density and root biomass were measured by WinRHIZO. Dye coverage was implied in the image analysis, and maximum depth of dye infiltration by direct measurement. Main results: Root length density and root biomass decreased with the increasing distance from soil surface, and root length density was 81.6% higher in preferential pathways than in soil matrix, and 66.7% for root biomass with respect to all experimental plots. Plant roots were densely distributed in the upper soil layers. Dye coverage was almost 100% in the upper 5-10 cm, but then decreased rapidly with soil depth. Root length density and root biomass were different from species: Platycladus orientalis Franco > Quercus dentata Thunb > Sophora japonica Linn. Research highlights: The results indicated that fine roots systems had strong effects on soil preferential flow, particularly root channels enhancing nutrition transport across soil profiles in forest dynamics.

  4. Effects of multiple root canal usage on the surface topography and fracture of two different Ni-Ti rotary file systems

    Directory of Open Access Journals (Sweden)

    Jojo Kottoor

    2013-01-01

    Full Text Available Aim: The purpose of this study was to evaluate the effect of multiple root canal usage on the surface topography and fracture of Twisted File (TF and ProTaper (PT rotary Ni-Ti file systems, using scanning electron microscope (SEM. Materials and Methods: Ten sets of PT and TF instruments were used to prepare the mesial canals of mandibular first molars. TF 25, 0.06 taper and PT F1 instruments were analyzed by SEM when new and thereafter every three root canal usages. This sequence was repeated for both the TF and PT groups until 12 uses. Two images of the instrument were recorded, one of the instrument tip and the other 5 mm from the tip, both at ×100 magnification. The sequential use was continued till the instrument fractured and the number of root canal usages for the file to fracture was noted. All fracture surfaces were examined under the SEM. Results: Fresh TF instruments showed no surface wear when compared to PT instruments (P 0.05, while at the 9 th usage TF showed a steep increase in the spiral distortion score when compared to PT (P < 0.05. PT instruments fractured at a mean root canal usage of 17.4, while TF instruments showed a mean root canal usage of 11.8. Fractographically, all the TF instruments failed due to torsion, while all the PT instruments failed because of cyclic fatigue. Conclusion: PT instruments showed more resistance to fracture than TF instruments.

  5. Neuroplastic alterations in the limbic system following cocaine or alcohol exposure.

    Science.gov (United States)

    Stuber, Garret D; Hopf, F Woodward; Tye, Kay M; Chen, Billy T; Bonci, Antonello

    2010-01-01

    Neuroplastic changes in the CNS are thought to be a fundamental component of learning and memory. While pioneering studies in the hippocampus and cerebellum have detailed many of the basic mechanisms that can lead to alterations in synaptic transmission based on previous activity, only more recently has synaptic plasticity been monitored after behavioral manipulation or drug exposure. In this chapter, we review evidence that drugs of abuse are powerful modulators of synaptic plasticity. Both the dopaminergic neurons of the ventral tegmental area as well medium spiny neurons in nucleus accumbens show enhanced excitatory synaptic strength following passive or active exposure to drugs such as cocaine and alcohol. In the VTA, both the enhancement of excitatory synaptic strength and the acquisition of drug-related behaviors depend on signaling through the N-methyl-D: -aspartate receptors (NMDARs) which are mechanistically thought to lead to increased synaptic insertion of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (AMPARs). Synaptic insertion of AMPARs by drugs of abuse can be long lasting, depending on the route of administration, number of drug exposures, or whether the drugs are received passively or self-administered. PMID:21161748

  6. Fine-root production dominates response of a deciduous forest to atmospheric CO2 enrichment.

    Science.gov (United States)

    Norby, Richard J; Ledford, Joanne; Reilly, Carolyn D; Miller, Nicole E; O'Neill, Elizabeth G

    2004-06-29

    Fine-root production and turnover are important regulators of the biogeochemical cycles of ecosystems and key components of their response to global change. We present a nearly continuous 6-year record of fine-root production and mortality from minirhizotron analysis of a closed-canopy, deciduous sweetgum forest in a free-air CO(2) enrichment experiment. Annual production of fine roots was more than doubled in plots with 550 ppm CO(2) compared with plots in ambient air. This response was the primary component of the sustained 22% increase in net primary productivity. Annual fine-root mortality matched annual production, and the mean residence time of roots was not altered by elevated CO(2), but peak fine-root standing crop in midsummer was significantly higher in CO(2)-enriched plots, especially deeper in the soil profile. The preferential allocation of additional carbon to fine roots, which have a fast turnover rate in this species, rather than to stemwood reduces the possibility of long-term enhancement by elevated CO(2) of carbon sequestration in biomass. However, sequestration of some of the fine-root carbon in soil pools is not precluded, and there may be other benefits to the tree from a seasonally larger and deeper fine-root system. Root-system dynamics can explain differences among ecosystems in their response to elevated atmospheric CO(2); hence, accurate assessments of carbon flux and storage in forests in a globally changing atmosphere must account for this unseen and difficult-to-measure component. PMID:15210962

  7. 75 FR 5094 - Privacy Act of 1974; Report of an Altered System of Records

    Science.gov (United States)

    2010-02-01

    ..., AND DISPOSING OF RECORDS IN THE SYSTEM: Storage: Records are maintained in database servers, file... sensitive data is encrypted using Oracle Transparent Data Encryption functionality. Access to records...

  8. Elimination of root-infecting pathogens in recirculation water from closed cultivation systems by ultra-violet radiation

    International Nuclear Information System (INIS)

    The development from growing in border soil to soilless cultures has not resulted in the disappearance of soil-borne diseases. Most root-infecting pathogens also occur in these new cultivation systems. Some pathogens such as Pythium, Phytophthora, cucumber green mottle mosaic virus and tomato mosaic virus are easily transmitted in recirculation water as is Olpidium, the vector of several viruses. To exclude any risk of dispersal of plant pathogens the water has to be sterilised before re-use. Rainwater collected from the glasshouse roof can also be contaminated with pathogens. When this rainwater is used for irrigation water it should be disinfected first. Currently water disinfection by heating or ozonisation is applied on some 450 nurseries. Initially ultra-violet(UV) radiation was not effective against plant pathogens. Only at a low capacity of 18 l h-1 and a high UV-dose of 430 mJ cm-2 could fungal spores be eliminated in nutrient solution. A low capacity however implies a poor turbulence in the water, resulting in varying UV-doses in the different water layers. Two new UV-installations with high capacities were tested for their efficacy against fungal and viral plant pathogens. One installation was equipped with a high-pressure and the other with a low-pressure mercury vapour lamp. In both installations a sandfilter first removed organic particles from the water. A UV-dose from the high-pressure lamp of 28 mJ cm-2 reduced the infectivity of conidia of Fusarium oxysporum f.sp lycopersici by 90 % resulting in a 99.9 % reduction at 84 mJ cm-2. The low-pressure lamp completely eliminated conidia of Fusarium at a UV-dose of 70 mJ cm-2. Tomato mosaic virus was reduced by 99 % using a UV-dose of 100 mJ cm-2 in both installations. Ultra-violet radiation can be effective against plant pathogens providing the dose under controlled conditions is sufficient. Numerous growers use UV-radiation for the disinfection of water in closed cultivation systems. (author)

  9. 76 FR 4485 - Privacy Act of 1974; Report of Modified or Altered System of Records

    Science.gov (United States)

    2011-01-25

    ... security code (numeric keypad) system. Access to the data entry area is also controlled by a cardkey system... computerized records, both on the mainframe and the National Center Local Area Network (LAN), includes... HUMAN SERVICES Centers for Disease Control and Prevention Privacy Act of 1974; Report of Modified...

  10. 75 FR 30411 - Privacy Act of 1974; Report of a Modified or Altered System of Records

    Science.gov (United States)

    2010-06-01

    ... Information Security and Privacy Management, Enterprise Architecture and Strategy Group, Office of Information... system was established and published in the Federal Register (FR) at 63 FR 40297 (July 28, 1998). The... retain identifiable data indefinitely in accordance with 69 FR 3434. SYSTEM MANAGERS AND...

  11. 76 FR 47190 - Privacy Act of 1974; Report of Modified or Altered System

    Science.gov (United States)

    2011-08-04

    ... INFORMATION: CMS will redesign and modernize the MARx System to simplify the data model, modernize the design... Prescription Drug (MARx) System, No. 09-70-4001,'' last modified at 70 FR 60530 (October 18, 2005). CMS... ``Standards for Privacy of Individually Identifiable Health Information'' (45 CFR parts 160 and 164, 65...

  12. Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin.

    Directory of Open Access Journals (Sweden)

    Caitlin Campbell

    Full Text Available Novel plasma metabolite patterns reflective of improved metabolic health (insulin sensitivity, fitness, reduced body weight were identified before and after a 14-17 wk weight loss and exercise intervention in sedentary, obese insulin-resistant women. To control for potential confounding effects of diet- or microbiome-derived molecules on the systemic metabolome, sampling was during a tightly-controlled feeding test week paradigm. Pairwise and multivariate analysis revealed intervention- and insulin-sensitivity associated: (1 Changes in plasma xeno-metabolites ("non-self" metabolites of dietary or gut microbial origin following an oral glucose tolerance test (e.g. higher post-OGTT propane-1,2,3-tricarboxylate [tricarballylic acid] or in the overnight-fasted state (e.g., lower γ-tocopherol; (2 Increased indices of saturated very long chain fatty acid elongation capacity; (3 Increased post-OGTT α-ketoglutaric acid (α-KG, fasting α-KG inversely correlated with Matsuda index, and altered patterns of malate, pyruvate and glutamine hypothesized to stem from improved mitochondrial efficiency and more robust oxidation of glucose. The results support a working model in which improved metabolic health modifies host metabolism in parallel with altering systemic exposure to xeno-metabolites. This highlights that interpretations regarding the origins of peripheral blood or urinary "signatures" of insulin resistance and metabolic health must consider the potentially important contribution of gut-derived metabolites toward the host's metabolome.

  13. Improved metabolic health alters host metabolism in parallel with changes in systemic xeno-metabolites of gut origin.

    Science.gov (United States)

    Campbell, Caitlin; Grapov, Dmitry; Fiehn, Oliver; Chandler, Carol J; Burnett, Dustin J; Souza, Elaine C; Casazza, Gretchen A; Gustafson, Mary B; Keim, Nancy L; Newman, John W; Hunter, Gary R; Fernandez, Jose R; Garvey, W Timothy; Harper, Mary-Ellen; Hoppel, Charles L; Meissen, John K; Take, Kohei; Adams, Sean H

    2014-01-01

    Novel plasma metabolite patterns reflective of improved metabolic health (insulin sensitivity, fitness, reduced body weight) were identified before and after a 14-17 wk weight loss and exercise intervention in sedentary, obese insulin-resistant women. To control for potential confounding effects of diet- or microbiome-derived molecules on the systemic metabolome, sampling was during a tightly-controlled feeding test week paradigm. Pairwise and multivariate analysis revealed intervention- and insulin-sensitivity associated: (1) Changes in plasma xeno-metabolites ("non-self" metabolites of dietary or gut microbial origin) following an oral glucose tolerance test (e.g. higher post-OGTT propane-1,2,3-tricarboxylate [tricarballylic acid]) or in the overnight-fasted state (e.g., lower γ-tocopherol); (2) Increased indices of saturated very long chain fatty acid elongation capacity; (3) Increased post-OGTT α-ketoglutaric acid (α-KG), fasting α-KG inversely correlated with Matsuda index, and altered patterns of malate, pyruvate and glutamine hypothesized to stem from improved mitochondrial efficiency and more robust oxidation of glucose. The results support a working model in which improved metabolic health modifies host metabolism in parallel with altering systemic exposure to xeno-metabolites. This highlights that interpretations regarding the origins of peripheral blood or urinary "signatures" of insulin resistance and metabolic health must consider the potentially important contribution of gut-derived metabolites toward the host's metabolome. PMID:24416208

  14. Altered functional brain network connectivity and glutamate system function in transgenic mice expressing truncated Disrupted-in-Schizophrenia 1.

    Science.gov (United States)

    Dawson, N; Kurihara, M; Thomson, D M; Winchester, C L; McVie, A; Hedde, J R; Randall, A D; Shen, S; Seymour, P A; Hughes, Z A; Dunlop, J; Brown, J T; Brandon, N J; Morris, B J; Pratt, J A

    2015-01-01

    Considerable evidence implicates DISC1 as a susceptibility gene for multiple psychiatric diseases. DISC1 has been intensively studied at the molecular, cellular and behavioral level, but its role in regulating brain connectivity and brain network function remains unknown. Here, we utilize a set of complementary approaches to assess the functional brain network abnormalities present in mice expressing a truncated Disc1 gene (Disc1tr Hemi mice). Disc1tr Hemi mice exhibited hypometabolism in the prefrontal cortex (PFC) and reticular thalamus along with a reorganization of functional brain network connectivity that included compromised hippocampal-PFC connectivity. Altered hippocampal-PFC connectivity in Disc1tr Hemi mice was confirmed by electrophysiological analysis, with Disc1tr Hemi mice showing a reduced probability of presynaptic neurotransmitter release in the monosynaptic glutamatergic hippocampal CA1-PFC projection. Glutamate system dysfunction in Disc1tr Hemi mice was further supported by the attenuated cerebral metabolic response to the NMDA receptor (NMDAR) antagonist ketamine and decreased hippocampal expression of NMDAR subunits 2A and 2B in these animals. These data show that the Disc1 truncation in Disc1tr Hemi mice induces a range of translationally relevant endophenotypes underpinned by glutamate system dysfunction and altered brain connectivity. PMID:25989143

  15. System of Antioxidant Protection of Corn Roots in Case of Adaptation to Combined Action of Herbicides and Soil Drought

    Directory of Open Access Journals (Sweden)

    G. S. Rossihina

    2005-09-01

    Full Text Available Reaction of antioxidant enzymes in the maize root (Kadr 267 MVhybrid to the combined action of herbicides and soil drought was studied. These conditions activated superoxide dismutase (SOD and peroxidase and coused oscillation in the catalase enzymatic activity.

  16. Stress response and humoral immune system alterations related to chronic hypergravity in mice.

    Science.gov (United States)

    Guéguinou, Nathan; Bojados, Mickaël; Jamon, Marc; Derradji, Hanane; Baatout, Sarah; Tschirhart, Eric; Frippiat, Jean-Pol; Legrand-Frossi, Christine

    2012-01-01

    Spaceflights are known to induce stress and immune dysregulation. Centrifugation, as hindlimb unloading, is a good ground based-model to simulate altered gravity which occurs during space missions. The aim of this study was to investigate the consequences of a long-term exposure to different levels of hypergravity on the stress response and the humoral immunity in a mouse model. For this purpose, adult C57Bl/6J male mice were subjected for 21 days either to control conditions or to 2G or 3G acceleration gravity forces. Corticosterone level and anxiety behavior revealed a stress response which was associated with a decrease of body weight, after 21-day of centrifugation at 3G but not at 2G. Spleen lymphocyte lipopolysaccharide (LPS) responsiveness was diminished by 40% in the 2G group only, whereas a decrease was noted when cells were stimulated with concanavalin A for both 2G and 3G groups (about 25% and 20%, respectively) compared to controls. Pro-inflammatory chemokines (MCP-1 and IP-10) and Th1 cytokines (IFNγ and IL2) were slightly decreased in the 2G group and strongly decreased in the 3G mouse group. Regarding Th2 cytokines (IL4, IL5) no further significant modification was observed, whereas the immunosuppressive cytokine IL10 was slightly increased in the 3G mice. Finally, serum IgG concentration was twice higher whereas IgA concentration was slightly increased (about 30%) and IgM were unchanged in 2G mice compared to controls. No difference was observed in the 3G group with these isotypes. Consequently, functional immune dysregulations and stress responses were dependent of the gravity level. PMID:21724335

  17. Alterations of hydraulic soil properties influenced by land-use changes and agricultural management systems

    Science.gov (United States)

    Weninger, Thomas; Kreiselmeier, Janis; Chandrasekhar, Parvathy; Jülich, Stefan; Schwärzel, Kai; Schwen, Andreas

    2016-04-01

    Estimation and modeling of soil water movement and the hydrologic balance of soils requires sound knowledge about hydraulic soil properties (HSP). The soil water characteristics, the hydraulic conductivity function and the pore size distribution (PSD) are commonly used instruments for the mathematical representation of HSP. Recent research highlighted the temporal variability of these functions caused by meteorological or land-use influences. State of the art modeling software for the continuous simulation of soil water movement uses a stationary approach for the HSP which means that their time dependent alterations and the subsequent effects on soil water balance is not considered. Mathematical approaches to describe the evolution of PSD are nevertheless known, but there is a lack of sound data basis for parameter estimation. Based on extensive field and laboratory measurements at 5 locations along a climatic gradient across Austria and Germany, this study will quantify short-term changes in HSP, detect driving forces and introduce a method to predict the effects of soil and land management actions on the soil water balance. Amongst several soil properties, field-saturated and unsaturated hydraulic conductivities will be determined using a hood infiltration experiments in the field as well as by evaporation and dewpoint potentiometer method in the lab. All measurements will be carried out multiple times over a span of 2 years which will allow a detailed monitoring of changes in HSP. Experimental sites where we expect significant inter-seasonal changes will be equipped with sensors for soil moisture and matric potential. The choice of experimental field sites follows the intention to involve especially the effects of tillage operations, different cultivation strategies, microclimatically effective structures and land-use changes. The international project enables the coverage of a broad range of soil types as well as climate conditions and hence will have broad

  18. Afrokoko Roots

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    Give us a little background information about Afrokoko Roots.How long have you been performing together?It's an international Afrobeat outfit that I founded in Beijing three years ago.I founded it in order to show Chinese people that Africa is beyond what they see and hear on TV.For the purpose of cultural exchange,I hope it can help the Chinese learn about African culture,music,fashion,history and much more.Our band features two dancers,two backup singers,two percussionists,four brass players,a keyboard player,a guitar player and a drummer- and me as the lead vocal,drummer and dancer,which makes for live performances that are equally exciting sonically as they are visually.We have been traveling around,and so far,we have toured and performed in many Chinese cities such as Dalian (Liaoning Province),Hohhot (Inner Mongolia Autonomous Region) and Haikou (Hainan Province).

  19. Functional and anatomic alterations in the gentamicin-damaged vestibular system in the guinea pig

    NARCIS (Netherlands)

    Oei, MLYM; Segenhout, HM; Dijk, T; Stokroos, [No Value; van der Want, TJL; Albers, FWJ

    2004-01-01

    Hypothesis: The purpose of this study was to investigate the expected functional and morphologic effect of gentamicin on the vestibular system simultaneously by measurement of vestibular evoked potentials and electron microscopic evaluation. Background: Vestibular short-latency evoked potentials to

  20. Effect of polymerization mode of two adhesive systems on push-out bond strength of fiber post to different regions of root canal dentin

    Directory of Open Access Journals (Sweden)

    Shahram Farzin Ebrahimi

    2014-01-01

    Full Text Available Background: A few studies have investigated the effect of the activation mode of adhesive systems on bond strength of fiber posts to root canal dentin. This study investigated the push-out bond strengths of a glass fiber post to different root canal regions with the use of two adhesives with light- and dual-cure polymerization modes. Materials and Methods: In this in vitro study, 40 maxillary central incisors were decoronated at cement-enamel junction with 15 ± 1 mm root length. After root canal therapy and post space preparations, they were randomly divided into four groups. Post spaces were treated with four different adhesives: Excite, Excite Dual cure Single Component (DSC, self-etch adhesive (AdheSE, and AdheSE dual-cure. Then the fiber-reinforced composite (FRC post, Postec Plus, was cemented with dual-cure resin cement, Variolink II. The roots were cut into three 2-mm-thick slices. Push-out tests were performed with a universal testing machine at a crosshead speed of 0.5 mm/min. The mode of failures was determined under a stereomicroscope. Data were analyzed by three-way analysis of variance (ANOVA and Tukey test was conducted to compare post hoc with P < 0.05 as the level of significance. Results: The highest bond strength was obtained for AdheSE dual-cure (15.54 ± 6.90 MPa and the lowest was obtained for Excite light-cure (10.07 ± 7.45 MPa and only the bond strength between these two adhesives had significant difference (P = 0.02. Bond strength decreased from the coronal to the apical in all groups and this was significant in Excite (group 1 and AdheSE (group 3 (P < 0.001. In apical regions, bond strength of dual-cure adhesives was significantly higher than light-cure adhesives (P < 0.001. Conclusion: Push-out bond strength of fiber post to different regions of root canal dentin was affected by both adhesive systems and their polymerization modes.