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Sample records for aligned coupling scheme

  1. Coherence features of the spin-aligned neutron-proton pair coupling scheme

    CERN Document Server

    Qi, C; Bäck, T; Cederwall, B; Johnson, A; Liotta, R J; Wyss, R

    2012-01-01

    The seniority scheme has been shown to be extremely useful for the classification of nuclear states in semi-magic nuclei. The neutron-proton ($np$) correlation breaks the seniority symmetry in a major way. As a result, the corresponding wave function is a mixture of many components with different seniority quantum numbers. In this contribution we show that the $np$ interaction may favor a new kind of coupling in $N=Z$ nuclei, i.e., the so-called isoscalar spin-aligned $np$ pair mode. Shell model calculations reveal that the ground and low-lying yrast states of the $N = Z$ nuclei $^{92}$Pd and $^{96}$Cd may mainly be built upon such spin-aligned $np$ pairs each carrying the maximum angular momentum $J = 9$ allowed by the shell $0g_{9/2}$ which is dominant in this nuclear region.

  2. Novel coupling scheme to control dynamics of coupled discrete systems

    Science.gov (United States)

    Shekatkar, Snehal M.; Ambika, G.

    2015-08-01

    We present a new coupling scheme to control spatio-temporal patterns and chimeras on 1-d and 2-d lattices and random networks of discrete dynamical systems. The scheme involves coupling with an external lattice or network of damped systems. When the system network and external network are set in a feedback loop, the system network can be controlled to a homogeneous steady state or synchronized periodic state with suppression of the chaotic dynamics of the individual units. The control scheme has the advantage that its design does not require any prior information about the system dynamics or its parameters and works effectively for a range of parameters of the control network. We analyze the stability of the controlled steady state or amplitude death state of lattices using the theory of circulant matrices and Routh-Hurwitz criterion for discrete systems and this helps to isolate regions of effective control in the relevant parameter planes. The conditions thus obtained are found to agree well with those obtained from direct numerical simulations in the specific context of lattices with logistic map and Henon map as on-site system dynamics. We show how chimera states developed in an experimentally realizable 2-d lattice can be controlled using this scheme. We propose this mechanism can provide a phenomenological model for the control of spatio-temporal patterns in coupled neurons due to non-synaptic coupling with the extra cellular medium. We extend the control scheme to regulate dynamics on random networks and adapt the master stability function method to analyze the stability of the controlled state for various topologies and coupling strengths.

  3. Cross-ontological analytics for alignment of different classification schemes

    Science.gov (United States)

    Posse, Christian; Sanfilippo, Antonio P; Gopalan, Banu; Riensche, Roderick M; Baddeley, Robert L

    2010-09-28

    Quantification of the similarity between nodes in multiple electronic classification schemes is provided by automatically identifying relationships and similarities between nodes within and across the electronic classification schemes. Quantifying the similarity between a first node in a first electronic classification scheme and a second node in a second electronic classification scheme involves finding a third node in the first electronic classification scheme, wherein a first product value of an inter-scheme similarity value between the second and third nodes and an intra-scheme similarity value between the first and third nodes is a maximum. A fourth node in the second electronic classification scheme can be found, wherein a second product value of an inter-scheme similarity value between the first and fourth nodes and an intra-scheme similarity value between the second and fourth nodes is a maximum. The maximum between the first and second product values represents a measure of similarity between the first and second nodes.

  4. Three discontinuous Galerkin schemes for the anisotropic heat conduction equation on non-aligned grids

    CERN Document Server

    Held, Markus; Steigmeir, Andreas

    2015-01-01

    We present and discuss three discontinuous Galerkin (dG) discretizations for the anisotropic heat conduction equation on non-aligned cylindrical grids. Our most favourable scheme relies on a self-adjoint local dG (LDG) discretization of the elliptic operator. It conserves the energy exactly and converges with arbitrary order. The pollution by numerical perpendicular heat fluxes degrades with superconvergence rates. We compare this scheme with aligned schemes that are based on the flux-coordinate independent approach for the discretization of parallel derivatives. Here, the dG method provides the necessary interpolation. The first aligned discretization can be used in an explicit time-integrator. However, the scheme violates conservation of energy and shows up stagnating convergence rates for very high resolutions. We overcome this partly by using the adjoint of the parallel derivative operator to construct a second self-adjoint aligned scheme. This scheme preserves energy, but reveals unphysical oscillations ...

  5. Dye alignment in luminescent solar concentrators: I. Vertical alignment for improved waveguide coupling

    Energy Technology Data Exchange (ETDEWEB)

    Mulder, Carlijn L.; Reusswig, Phil D.; Velazquez, Amador M.; Kim, Heekyung; Rotschild, Carmel; Baldo, Marc

    2010-04-26

    Luminescent solar concentrators (LSCs) use dye molecules embedded in a flat-plate waveguide to absorb solar radiation. Ideally, the dyes re-emit the absorbed light into waveguide modes that are coupled to solar cells. But some photons are always lost, re-emitted through the face of the LSC and coupled out of the waveguide. In this work, we improve the fundamental efficiency limit of an LSC by controlling the orientation of dye molecules using a liquid crystalline host. First, we present a theoretical model for the waveguide trapping efficiency as a function of dipole orientation. Next, we demonstrate an increase in the trapping efficiency from 66% for LSCs with no dye alignment to 81% for a LSC with vertical dye alignment. Finally, we show that the enhanced trapping efficiency is preserved for geometric gains up to 30, and demonstrate that an external diffuser can alleviate weak absorption in LSCs with vertically-aligned dyes.

  6. Molecular alignment effect on the photoassociation process via a pump-dump scheme.

    Science.gov (United States)

    Wang, Bin-Bin; Han, Yong-Chang; Cong, Shu-Lin

    2015-09-01

    The photoassociation processes via the pump-dump scheme for the heternuclear (Na + H → NaH) and the homonuclear (Na + Na → Na2) molecular systems are studied, respectively, using the time-dependent quantum wavepacket method. For both systems, the initial atom pair in the continuum of the ground electronic state (X(1)Σ(+)) is associated into the molecule in the bound states of the excited state (A(1)Σ(+)) by the pump pulse. Then driven by a time-delayed dumping pulse, the prepared excited-state molecule can be transferred to the bound states of the ground electronic state. It is found that the pump process can induce a superposition of the rovibrational levels |v, j〉 on the excited state, which can lead to the field-free alignment of the excited-state molecule. The molecular alignment can affect the dumping process by varying the effective coupling intensity between the two electronic states or by varying the population transfer pathways. As a result, the final population transferred to the bound states of the ground electronic state varies periodically with the delay time of the dumping pulse. PMID:26342366

  7. Molecular alignment effect on the photoassociation process via a pump-dump scheme

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Bin-Bin; Han, Yong-Chang, E-mail: ychan@dlut.edu.cn; Cong, Shu-Lin [School of Physics and Optoelectronic Technology, Dalian University of Technology, Dalian 116024 (China)

    2015-09-07

    The photoassociation processes via the pump-dump scheme for the heternuclear (Na + H → NaH) and the homonuclear (Na + Na → Na{sub 2}) molecular systems are studied, respectively, using the time-dependent quantum wavepacket method. For both systems, the initial atom pair in the continuum of the ground electronic state (X{sup 1}Σ{sup +}) is associated into the molecule in the bound states of the excited state (A{sup 1}Σ{sup +}) by the pump pulse. Then driven by a time-delayed dumping pulse, the prepared excited-state molecule can be transferred to the bound states of the ground electronic state. It is found that the pump process can induce a superposition of the rovibrational levels |v, j〉 on the excited state, which can lead to the field-free alignment of the excited-state molecule. The molecular alignment can affect the dumping process by varying the effective coupling intensity between the two electronic states or by varying the population transfer pathways. As a result, the final population transferred to the bound states of the ground electronic state varies periodically with the delay time of the dumping pulse.

  8. A combined alignment and registration scheme of psoriasis lesion |images

    DEFF Research Database (Denmark)

    Maletti, Gabriela Mariel; Ersbøll, Bjarne Kjær

    2003-01-01

    A two-stage registration scheme of psoriasis lesion patterns is proposed. In the first stage, global rotation and translation effects of assumed equally scaled psoriasis lesion patterns are removed. In the second stage, only local translation effects are removed. In both stages a novel algorithm...

  9. Scheme variations of the QCD coupling and hadronic $\\tau$ decays

    OpenAIRE

    Boito, Diogo; Jamin, Matthias; Miravitllas, Ramon

    2016-01-01

    The Quantum Chromodynamics (QCD) coupling, $\\alpha_s$, is not a physical observable of the theory since it depends on conventions related to the renormalization procedure. We introduce a definition of the QCD coupling, denoted by $\\widehat\\alpha_s$, whose running is explicitly renormalization scheme invariant. The scheme dependence of the new coupling $\\widehat\\alpha_s$ is parameterized by a single parameter $C$, related to transformations of the QCD scale $\\Lambda$. It is demonstrated that a...

  10. Alignment, reverse alignment, and wrong sign Yukawa couplings in two Higgs doublet models

    Science.gov (United States)

    Biswas, Ambalika; Lahiri, Amitabha

    2016-06-01

    We consider two Higgs doublet models with a softly broken U(1) symmetry, for various limiting values of the scalar mixing angles α and β . These correspond to the Standard Model Higgs particle being the lighter C P -even scalar (alignment) or the heavier C P -even scalar (reverse alignment), and also the limit in which some of the Yukawa couplings of this particle are the opposite sign of the vector boson couplings (wrong sign). In these limits we impose a criterion for naturalness by demanding that quadratic divergences cancel at one loop. We plot the allowed masses of the remaining physical scalars based on naturalness, stability, perturbative unitarity, and constraints coming from the ρ parameter. We also calculate the h →γ γ decay width in the wrong sign limit.

  11. High-brightness fiber-coupling schemes for diode laser bars

    Science.gov (United States)

    Schreiber, Peter; Hoefer, Bernd; Dannberg, Peter; Zeitner, Uwe D.

    2005-08-01

    Fiber-coupling of high-brightness laser diode bars requires shaping and superposition of the images of the individual emitters on the fiber facet. Employment of micro-optical elements together with bulk-optical components enables the design and manufacturing of efficient coupling schemes with small form-factor. In this presentation we describe optical system design, manufacturing of micro-optical elements, system integration and characterization of two coupling schemes: The beam twister approach uses tilted cylindrical mirolens telescopes to rotate the images of the individual emitters by 90° with subsequent beam compression and focusing optics, while a skew ray coupling scheme applies an array of blazed diffractive elements in the pupil plane of a relay optics to superpose the images of the individual emitters. The optics design is based on raytracing procedures, taking into account diffractive effects, which could lower coupling efficiency. Micro-optical components are realized by polymer-on-glass replication of reflow lenses or grating structures manufactured by laser-lithography. System assembly is based on precise glueing with active alignment in the submicrometer range. We realized several optics schemes for coupling of high-power, high-brightness laser diode bars into fibers with 100µm core diameter. The systems are compared with each other with respect to achievable coupling efficiency, adjustment tolerances and pointing stability.

  12. A novel fully automatic scheme for fiducial marker-based alignment in electron tomography.

    Science.gov (United States)

    Han, Renmin; Wang, Liansan; Liu, Zhiyong; Sun, Fei; Zhang, Fa

    2015-12-01

    Although the topic of fiducial marker-based alignment in electron tomography (ET) has been widely discussed for decades, alignment without human intervention remains a difficult problem. Specifically, the emergence of subtomogram averaging has increased the demand for batch processing during tomographic reconstruction; fully automatic fiducial marker-based alignment is the main technique in this process. However, the lack of an accurate method for detecting and tracking fiducial markers precludes fully automatic alignment. In this paper, we present a novel, fully automatic alignment scheme for ET. Our scheme has two main contributions: First, we present a series of algorithms to ensure a high recognition rate and precise localization during the detection of fiducial markers. Our proposed solution reduces fiducial marker detection to a sampling and classification problem and further introduces an algorithm to solve the parameter dependence of marker diameter and marker number. Second, we propose a novel algorithm to solve the tracking of fiducial markers by reducing the tracking problem to an incomplete point set registration problem. Because a global optimization of a point set registration occurs, the result of our tracking is independent of the initial image position in the tilt series, allowing for the robust tracking of fiducial markers without pre-alignment. The experimental results indicate that our method can achieve an accurate tracking, almost identical to the current best one in IMOD with half automatic scheme. Furthermore, our scheme is fully automatic, depends on fewer parameters (only requires a gross value of the marker diameter) and does not require any manual interaction, providing the possibility of automatic batch processing of electron tomographic reconstruction.

  13. Complete Synchronization in Coupled Chaotic HR Neurons with Symmetric Coupling Schemes

    Institute of Scientific and Technical Information of China (English)

    WANG Hai-Xia; LU Qi-Shao; WANG Qing-Yun

    2005-01-01

    @@ Chaos synchronization in an array of coupled chaotic neurons with symmetric coupling is investigated. A criterion for the stability of the synchronization manifold is deduced by transforming the variational equation of the coupled system into a block diagonal one, and the critical coupling strengths for synchronization in different coupled cases are given. As examples for illustration, the HR neurons with the open-ended (i.e. chain), ring, star and all-to-all(i.e. global) coupling schemes are considered. It is shown that the coupling scheme plays an important role in synchronization and information transmission of neurons.

  14. Coupling Schemes for Multiphysics Reactor Simulation

    Energy Technology Data Exchange (ETDEWEB)

    Vijay Mahadeven; Jean Ragusa

    2007-11-01

    This report documents the progress of the student Vijay S. Mahadevan from the Nuclear Engineering Department of Texas A&M University over the summer of 2007 during his visit to the INL. The purpose of his visit was to investigate the physics-based preconditioned Jacobian-free Newton-Krylov method applied to physics relevant to nuclear reactor simulation. To this end he studied two test problems that represented reaction-diffusion and advection-reaction. These two test problems will provide the basis for future work in which neutron diffusion, nonlinear heat conduction, and a twophase flow model will be tightly coupled to provide an accurate model of a BWR core.

  15. Self-aligned Coupled Waveguide Distributed Bragg Reflector Lasers

    Institute of Scientific and Technical Information of China (English)

    LIU Guoli; WANG Wei; ZHU Hongliang; ZHANG Jingyuan; HU Xiaohua; LU Yu; ZHANG Jing

    2002-01-01

    A novel self-aligned coupled waveguide (SACW) multi-quantum-well (MQW) distributed Bragg reflector (DBR) laser is proposed and demonstrated for the first time. By selectively removing the MQW layer and leaving the low SCH/SACW layer the Bragg grating is partially formed on this layer. By optimizing the thickness of the low SCH/SACW layer, a~80% coupling efficiency between the MQW gain region and the passive region are obtained. The typical threshold current of the SACW DBR laser is 39 mA, the slope efficiency can reach to 0.2 mW/mA and the output power is more than 20 mW with a more than 30dB side mode suppression ratio.

  16. Rhythm Synchronization of Coupled Neurons with Temporal Coding Scheme

    Institute of Scientific and Technical Information of China (English)

    SHI Xia; LU Qi-Shao

    2007-01-01

    Encoding information by firing patterns is one of the basic neural functions, and synchronization is important collective behaviour of a group of coupled neurons. Taking account of two schemes for encoding information (that is, rate coding and temporal coding), rhythm synchronization of coupled neurons is studied. There are two types of rhythm synchronization of neurons: spike and burst synchronizations. Firstly, it is shown that the spike synchronization is equivalent to the phase synchronization for coupled neurons. Secondly, the similarity function of the slow variables of neurons, which have relevant to the bursting process, is proposed to judge the burst synchronization. It is also found that the burst synchronization can be achieved more easily than the spike synchronization, whatever the firing patterns of the neurons are. Hence the temporal encoding scheme, which is closely related to both the spike and burst synchronizations, is more comprehensive than the rate coding scheme in essence.

  17. Scheme variations of the QCD coupling and hadronic $\\tau$ decays

    CERN Document Server

    Boito, Diogo; Miravitllas, Ramon

    2016-01-01

    The Quantum Chromodynamics (QCD) coupling, $\\alpha_s$, is not a physical observable of the theory since it depends on conventions related to the renormalization procedure. We introduce a definition of the QCD coupling, denoted by $\\widehat\\alpha_s$, whose running is explicitly renormalization scheme invariant. The scheme dependence of the new coupling $\\widehat\\alpha_s$ is parameterized by a single parameter $C$, related to transformations of the QCD scale $\\Lambda$. It is demonstrated that appropriate choices of $C$ can lead to substantial improvements in the perturbative prediction of physical observables. As phenomenological applications, we study $e^+e^-$ scattering and decays of the $\\tau$ lepton into hadrons, both being governed by the QCD Adler function.

  18. A novel scheme for DVL-aided SINS in-motion alignment using UKF techniques.

    Science.gov (United States)

    Li, Wanli; Wang, Jinling; Lu, Liangqing; Wu, Wenqi

    2013-01-15

    In-motion alignment of Strapdown Inertial Navigation Systems (SINS) without any geodetic-frame observations is one of the toughest challenges for Autonomous Underwater Vehicles (AUV). This paper presents a novel scheme for Doppler Velocity Log (DVL) aided SINS alignment using Unscented Kalman Filter (UKF) which allows large initial misalignments. With the proposed mechanism, a nonlinear SINS error model is presented and the measurement model is derived under the assumption that large misalignments may exist. Since a priori knowledge of the measurement noise covariance is of great importance to robustness of the UKF, the covariance-matching methods widely used in the Adaptive KF (AKF) are extended for use in Adaptive UKF (AUKF). Experimental results show that the proposed DVL-aided alignment model is effective with any initial heading errors. The performances of the adaptive filtering methods are evaluated with regards to their parameter estimation stability. Furthermore, it is clearly shown that the measurement noise covariance can be estimated reliably by the adaptive UKF methods and hence improve the performance of the alignment.

  19. A Novel Scheme for DVL-Aided SINS In-Motion Alignment Using UKF Techniques

    Directory of Open Access Journals (Sweden)

    Wenqi Wu

    2013-01-01

    Full Text Available In-motion alignment of Strapdown Inertial Navigation Systems (SINS without any geodetic-frame observations is one of the toughest challenges for Autonomous Underwater Vehicles (AUV. This paper presents a novel scheme for Doppler Velocity Log (DVL aided SINS alignment using Unscented Kalman Filter (UKF which allows large initial misalignments. With the proposed mechanism, a nonlinear SINS error model is presented and the measurement model is derived under the assumption that large misalignments may exist. Since a priori knowledge of the measurement noise covariance is of great importance to robustness of the UKF, the covariance-matching methods widely used in the Adaptive KF (AKF are extended for use in Adaptive UKF (AUKF. Experimental results show that the proposed DVL-aided alignment model is effective with any initial heading errors. The performances of the adaptive filtering methods are evaluated with regards to their parameter estimation stability. Furthermore, it is clearly shown that the measurement noise covariance can be estimated reliably by the adaptive UKF methods and hence improve the performance of the alignment.

  20. Burnup span sensitivity analysis of different burnup coupling schemes

    International Nuclear Information System (INIS)

    Highlights: ► The objective of this work is the burnup span sensitivity analysis of different coupling schemes. ► Three kinds of schemes have been implemented in a new MCNP–ORIGEN linkage program. ► Two kinds of schemes are based predictor–corrector technique and the third is based on Euler explicit method. ► The analysis showed that the predictor–corrector approach better accounts for nonlinear behavior of burnup. ► It is sufficiently good to use the Euler method at small spans but for large spans use of second order scheme is mandatory. - Abstract: The analysis of core composition changes is complicated by the fact that the time and spatial variations in isotopic composition depend on the neutron flux distribution and vice versa. Fortunately, changes in core composition occur relatively slowly and hence the burnup analysis can be performed by dividing the burnup period into some burnup spans and assuming that the averaged flux and cross sections are constant during each burn up span. The burnup span sensitivity analysis attempts to find how much the burnup spans could be increased without any significant change in results. This goal has been achieved by developing a new MCNP–ORIGEN linkage program named MOBC (MCNP–ORIGEN Burnup Calculation). Three kinds of coupling scheme have been implemented in MOBC. Two of these are based on second order predictor–corrector technique and enable us to choose larger time steps, whilst the third one is based on Euler explicit first order method and is faster than the other two. The validity of the developed program has been evaluated by the code vs. code comparison technique. Two different types of codes are employed. The first one is based on deterministic two dimensional transport method, like CASMO-4 and HELIOS codes, and the second one is based on Monte Carlo method, like MCODE code. Only one coupling technique is employed in each of these state of the art codes, while the MOBC excels in its ability to

  1. A downlink and uplink alignment scheme for power saving in IEEE 802.16 protocol.

    Science.gov (United States)

    Chen, Jenhui; Tarn, Woei-Hwa; Lee, Jiann-Der

    2014-01-01

    This study shows the problem of power saving mechanism (PSM) that sleep intervals of uplink (UL) connections do not synchronize with sleep intervals of downlink (DL) connections. That is, the energy of a mobile station (MS) is not really saved if the DL connections are in the sleep mode while the UL connections are in normal mode, and vice versa. To avoid the asynchronism of power saving (PS) between UL and DL connections, we invent a mechanism of DL connections regulating UL connections, called DL and UL Alignment (DUAL) scheme, to improve the energy efficiency for PS. Considering that the buffer size of MS is limited, DUAL uses the mean packet arrival rate of UL λ u and a relatively safe threshold of buffer size Q T as the parameters to estimate the maximum allowable waiting time to align the UL with the DL connections. To analyze the performance of DUAL, a system model of PS is proposed to evaluate the performance of DUAL under different conditions. The correctness of performance analysis of DUAL is validated by using simulation with realistic parameters. Numerical experiments show that DUAL improves the energy conservation significantly when UL traffic is greater than DL traffic.

  2. A Downlink and Uplink Alignment Scheme for Power Saving in IEEE 802.16 Protocol

    Directory of Open Access Journals (Sweden)

    Jenhui Chen

    2014-01-01

    Full Text Available This study shows the problem of power saving mechanism (PSM that sleep intervals of uplink (UL connections do not synchronize with sleep intervals of downlink (DL connections. That is, the energy of a mobile station (MS is not really saved if the DL connections are in the sleep mode while the UL connections are in normal mode, and vice versa. To avoid the asynchronism of power saving (PS between UL and DL connections, we invent a mechanism of DL connections regulating UL connections, called DL and UL Alignment (DUAL scheme, to improve the energy efficiency for PS. Considering that the buffer size of MS is limited, DUAL uses the mean packet arrival rate of UL λu and a relatively safe threshold of buffer size QT as the parameters to estimate the maximum allowable waiting time to align the UL with the DL connections. To analyze the performance of DUAL, a system model of PS is proposed to evaluate the performance of DUAL under different conditions. The correctness of performance analysis of DUAL is validated by using simulation with realistic parameters. Numerical experiments show that DUAL improves the energy conservation significantly when UL traffic is greater than DL traffic.

  3. Magnetosphere-Ionosphere Coupling and Field-Aligned Currents

    CERN Document Server

    Oliveira, D M

    2015-01-01

    It is presented in this paper a review of one of several interactions between the magnetosphere and the ionosphere through the field-aligned currents (FACs). Some characteristics and physical implications of the currents flowing in a plane perpendicular to the magnetic field at high latitudes are discussed. The behavior of this system as an electric circuit is explained, where momentum and energy are transferred via Poynting flux from the magnetosphere into the ionosphere.

  4. A high order energy preserving scheme for the strongly coupled nonlinear Schrödinger system

    International Nuclear Information System (INIS)

    A high order energy preserving scheme for a strongly coupled nonlinear Schrödinger system is proposed by using the average vector field method. The high order energy preserving scheme is applied to simulate the soliton evolution of the strongly coupled Schrödinger system. Numerical results show that the high order energy preserving scheme can well simulate the soliton evolution, moreover, it preserves the discrete energy of the strongly coupled nonlinear Schrödinger system exactly. (general)

  5. Vehicle to wireless power transfer coupling coil alignment sensor

    Science.gov (United States)

    Miller, John M.; Chambon, Paul H.; Jones, Perry T.; White, Clifford P.

    2016-02-16

    A non-contacting position sensing apparatus includes at least one vehicle-mounted receiver coil that is configured to detect a net flux null when the vehicle is optimally aligned relative to the primary coil in the charging device. Each of the at least one vehicle-mounted receiver coil includes a clockwise winding loop and a counterclockwise winding loop that are substantially symmetrically configured and serially connected to each other. When the non-contacting position sensing apparatus is located directly above the primary coil of the charging device, the electromotive forces from the clockwise winding loop and the counterclockwise region cancel out to provide a zero electromotive force, i.e., a zero voltage reading across the coil that includes the clockwise winding loop and the counterclockwise winding loop.

  6. Coupling of a single quantum emitter to end-to-end aligned silver nanowires

    DEFF Research Database (Denmark)

    Kumar, Shailesh; Huck, Alexander; Chen, Yuntian;

    2013-01-01

    We report on the observation of coupling a single nitrogen vacancy (NV) center in a nanodiamond crystal to a propagating plasmonic mode of silver nanowires. The nanocrystal is placed either near the apex of a single silver nanowire or in the gap between two end-to-end aligned silver nanowires. We...... observe an enhancement of the NV-centers' decay rate in both cases as a result of the coupling to the plasmons. The devices are nano-assembled with a scanning probe technique. Through simulations, we show that end-to-end aligned silver nanowires can be used as a controllable splitter for emission from...

  7. Numerical schemes for the coupling of compressible and incompressible fluids in several space dimensions

    CERN Document Server

    Neusser, Jochen

    2015-01-01

    We present a numerical scheme for immiscible two-phase flows with one compressible and one incompressible phase. Special emphasis lies in the discussion of the coupling strategy for compressible and incompressible Euler equations to simulate inviscid liquid-vapour flows. To reduce the computational effort further, we also introduce two approximate coupling strategies. The resulting schemes are compared numerically to a fully compressible scheme and show good agreement with these standard algorithm at lower numerical costs.

  8. Description of a stable scheme for steady-state coupled Monte Carlo-thermal-hydraulic calculations

    OpenAIRE

    Dufek, Jan; Eduard Hoogenboom, J.

    2014-01-01

    We provide a detailed description of a numerically stable and efficient coupling scheme for steady-state Monte Carlo neutronic calculations with thermal-hydraulic feedback. While we have previously derived and published the stochastic approximation based method for coupling the Monte Carlo criticality and thermal-hydraulic calculations, its possible implementation has not been described in a step-by-step manner. As the simple description of the coupling scheme was repeatedly requested from us...

  9. Partial alignment and measurement of residual dipolar couplings of proteins under high hydrostatic pressure

    Energy Technology Data Exchange (ETDEWEB)

    Fu, Yinan; Wand, A. Joshua, E-mail: wand@mail.med.upenn.edu [University of Pennsylvania, Department of Biochemistry and Biophysics, Johnson Research Foundation (United States)

    2013-08-15

    High-pressure NMR spectroscopy has emerged as a complementary approach for investigating various structural and thermodynamic properties of macromolecules. Noticeably absent from the array of experimental restraints that have been employed to characterize protein structures at high hydrostatic pressure is the residual dipolar coupling, which requires the partial alignment of the macromolecule of interest. Here we examine five alignment media that are commonly used at ambient pressure for this purpose. We find that the spontaneous alignment of Pf1 phage, d(GpG) and a C12E5/n-hexnanol mixture in a magnetic field is preserved under high hydrostatic pressure. However, DMPC/DHPC bicelles and collagen gel are found to be unsuitable. Evidence is presented to demonstrate that pressure-induced structural changes can be identified using the residual dipolar coupling.

  10. A Cell-Centered Multiphase ALE Scheme With Structural Coupling

    Energy Technology Data Exchange (ETDEWEB)

    Dunn, Timothy Alan [Univ. of California, Davis, CA (United States)

    2012-04-16

    A novel computational scheme has been developed for simulating compressible multiphase flows interacting with solid structures. The multiphase fluid is computed using a Godunov-type finite-volume method. This has been extended to allow computations on moving meshes using a direct arbitrary-Eulerian- Lagrangian (ALE) scheme. The method has been implemented within a Lagrangian hydrocode, which allows modeling the interaction with Lagrangian structural regions. Although the above scheme is general enough for use on many applications, the ultimate goal of the research is the simulation of heterogeneous energetic material, such as explosives or propellants. The method is powerful enough for application to all stages of the problem, including the initial burning of the material, the propagation of blast waves, and interaction with surrounding structures. The method has been tested on a number of canonical multiphase tests as well as fluid-structure interaction problems.

  11. Atomic electronic states: the L-S and j-j coupling schemes and their correlation

    CERN Document Server

    Li, Wai-Kee

    2014-01-01

    In the first part of this paper, we review the assumption of the L-S coupling scheme, with which we derive the electronic states arising from a given atomic configuration. Then, with the aid of the spectral data of Group 15 elements, it becomes clear that the assumption of the L-S coupling scheme is no longer valid as we go farther and farther down the Periodic Table. In the second part, we introduce the j-j coupling scheme, which is seldom covered in standard inorganic chemistry texts, and contrast the assumptions of the two schemes. Next, we use two worked examples to demonstrate the derivation of electronic states with the j-j coupling scheme. Finally, the correlation between the states derived by L-S and j-j schemes is pictorially shown. It is believed a student, by also studying j-j coupling schemes (by no means a difficult task) along with the L-S scheme, will gain a better understanding of the concept of atomic electronic states.

  12. Source Driver Channel Reduction Schemes Employing Corresponding Pixel Alignments for Current Programming Active-Matrix Organic Light-Emitting Diode Displays

    Science.gov (United States)

    Hong, Soon-Kwang; Oh, Du-Hwan; Jeong, Seok-Hee; Park, Young-Ju; Kim, Byeong-Koo; Ha, Yong-Min; Jang, Jin

    2008-03-01

    We propose two types of novel scheme for reducing the number of output channels of driver-integrated circuit (D-IC) for the current programming compensation pixel structures of active-matrix organic light-emitting diodes (AMOLEDs). One is a 2:1 data demultiplexing technique that can reduce the number of output channels of D-IC by half. The proposed second scheme is a vertically aligned red (R), green (G), and blue (B) subpixel scheme instead of a horizontally aligned R-G-B subpixel one, which is regarded as the conventional pixel alignment scheme. We have also successfully implemented these schemes in a 2.4-in.-sized QCIF + (176 × RGB × 220) AMOLED using p-type excimer laser annealing (ELA) low-temperature polycrystalline silicon (LTPS) technology and evaluated key performance characteristics.

  13. Parallel Interleaved VSCs: Influence of the PWM Scheme on the Design of the Coupled Inductor

    DEFF Research Database (Denmark)

    Gohil, Ghanshyamsinh Vijaysinh; Bede, Lorand; Maheshwari, Ram Krishan;

    2014-01-01

    -linkage in the CI is presented in this paper. The maximum flux density and the core losses, being the most important parameters for the CI design, are evaluated for continuous PWM and discontinuous pulsewidth modulation (DPWM) schemes. The effect of these PWM schemes on the design of the CI is discussed....... To limit the circulating current, magnetic coupling between the interleaved legs of the corresponding phase is provided by means of a Coupled Inductor (CI). The design of the CI is strongly influenced by the Pulsewidth Modulation (PWM) scheme used. The analytical model to evaluate the flux...

  14. Stable explicit coupling of the Yee scheme with a linear current model in fluctuating magnetized plasmas

    International Nuclear Information System (INIS)

    This work analyzes the stability of the Yee scheme for non-stationary Maxwell's equations coupled with a linear current model with density fluctuations. We show that the usual procedure may yield unstable scheme for physical situations that correspond to strongly magnetized plasmas in X-mode (TE) polarization. We propose to use first order clustered discretization of the vectorial product that gives back a stable coupling. We validate the schemes on some test cases representative of direct numerical simulations of X-mode in a magnetic fusion plasma including turbulence

  15. Stable explicit coupling of the Yee scheme with a linear current model in fluctuating magnetized plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Filipe da, E-mail: tanatos@ipfn.ist.utl.pt [Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisboa (Portugal); Pinto, Martin Campos, E-mail: campos@ann.jussieu.fr [CNRS, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); Sorbonne Universités, UPMC Univ Paris 06, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); Després, Bruno, E-mail: despres@ann.jussieu.fr [Sorbonne Universités, UPMC Univ Paris 06, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); CNRS, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); Heuraux, Stéphane, E-mail: stephane.heuraux@univ-lorraine.fr [Institut Jean Lamour, UMR 7198, CNRS – University Lorraine, Vandoeuvre (France)

    2015-08-15

    This work analyzes the stability of the Yee scheme for non-stationary Maxwell's equations coupled with a linear current model with density fluctuations. We show that the usual procedure may yield unstable scheme for physical situations that correspond to strongly magnetized plasmas in X-mode (TE) polarization. We propose to use first order clustered discretization of the vectorial product that gives back a stable coupling. We validate the schemes on some test cases representative of direct numerical simulations of X-mode in a magnetic fusion plasma including turbulence.

  16. Fourth-order compact schemes for the numerical simulation of coupled Burgers' equation

    Science.gov (United States)

    Bhatt, H. P.; Khaliq, A. Q. M.

    2016-03-01

    This paper introduces two new modified fourth-order exponential time differencing Runge-Kutta (ETDRK) schemes in combination with a global fourth-order compact finite difference scheme (in space) for direct integration of nonlinear coupled viscous Burgers' equations in their original form without using any transformations or linearization techniques. One scheme is a modification of the Cox and Matthews ETDRK4 scheme based on (1 , 3) -Padé approximation and other is a modification of Krogstad's ETDRK4-B scheme based on (2 , 2) -Padé approximation. Efficient versions of the proposed schemes are obtained by using a partial fraction splitting technique of rational functions. The stability properties of the proposed schemes are studied by plotting the stability regions, which provide an explanation of their behavior for dispersive and dissipative problems. The order of convergence of the schemes is examined empirically and found that the modification of ETDRK4 converges with the expected rate even if the initial data are nonsmooth. On the other hand, modification of ETDRK4-B suffers with order reduction if the initial data are nonsmooth. Several numerical experiments are carried out in order to demonstrate the performance and adaptability of the proposed schemes. The numerical results indicate that the proposed schemes provide better accuracy than other schemes available in the literature. Moreover, the results show that the modification of ETDRK4 is reliable and yields more accurate results than modification of ETDRK4-B, while solving problems with nonsmooth data or with high Reynolds number.

  17. Scalar coupling evolution in a non-perturbative QCD resummation scheme

    Energy Technology Data Exchange (ETDEWEB)

    Gomez, J.D., E-mail: jgomez@ufabc.edu.br [Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, 09210-170, Santo André, SP (Brazil); Natale, A.A., E-mail: natale@ift.unesp.br [Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, 09210-170, Santo André, SP (Brazil); Instituto de Física Teórica, UNESP, Rua Dr. Bento T. Ferraz, 271, Bloco II, 01140-070, São Paulo, SP (Brazil)

    2015-07-30

    We compute the Standard Model scalar coupling (λ) evolution in a particular QCD resummation scheme, where the QCD coupling becomes infrared finite due to the presence of a dynamically generated gluon mass, leading to the existence of a non-perturbative infrared fixed point. We discuss how this scheme can be fixed taking recourse to phenomenological considerations in the infrared region. The QCD β function associated to this non-perturbative coupling when introduced into the SM renormalization group equations increases the λ values at high energies.

  18. Numerical issues for coupling biological models with isopycnal mixing schemes

    Science.gov (United States)

    Gnanadesikan, Anand

    1999-01-01

    In regions of sloping isopycnals, isopycnal mixing acting in conjunction with biological cycling can produce patterns in the nutrient field which have negative values of tracer in light water and unrealistically large values of tracer in dense water. Under certain circumstances, these patterns can start to grow unstably. This paper discusses why such behavior occurs. Using a simple four-box model, it demonstrates that the instability appears when the isopycnal slopes exceed the grid aspect ratio ( Δz/ Δx). In contrast to other well known instabilities of the CFL type, this instability does not depend on the time step or time-stepping scheme. Instead it arises from a fundamental incompatibility between two requirements for isopycnal mixing schemes, namely that they should produce no net flux of passive tracer across an isopycnal and everywhere reduce tracer extrema. In order to guarantee no net flux of tracer across an isopycnal, some upgradient fluxes across certain parts of an isopycnal are required to balance downgradient fluxes across other parts of the isopycnal. However, these upgradient fluxes can cause local maxima in the nutrient field to become self-reinforcing. Although this is less of a problem in larger domains, there is still a strong tendency for isopycnal mixing to overconcentrate tracer in the dense water. The introduction of eddy-induced advection is shown to be capable of counteracting the upgradient fluxes of nutrient which cause problems, stabilizing the solution. The issue is not simply a numerical curiosity. When used in a GCM, different parameterizations of eddy mixing result in noticeably different distributions of nutrient and large differences in biological production. While much of this is attributable to differences in convection and circulation, the numerical errors described here may also play an important role in runs with isopycnal mixing alone.

  19. Application of partially-coupled hydro-mechanical schemes to multiphase flow problems

    Science.gov (United States)

    Tillner, Elena; Kempka, Thomas

    2016-04-01

    Utilization of subsurface reservoirs by fluid storage or production generally triggers pore pressure changes and volumetric strains in reservoirs and cap rocks. The assessment of hydro-mechanical effects can be undertaken using different process coupling strategies. The fully-coupled geomechanics and flow simulation, constituting a monolithic system of equations, is rarely applied for simulations involving multiphase fluid flow due to the high computational efforts required. Pseudo-coupled simulations are driven by static tabular data on porosity and permeability changes as function of pore pressure or mean stress, resulting in a rather limited flexibility when encountering complex subsurface utilization schedules and realistic geological settings. Partially-coupled hydro-mechanical simulations can be distinguished into one-way and iterative two-way coupled schemes, whereby the latter one is based on calculations of flow and geomechanics, taking into account the iterative exchange of coupling parameters between the two respective numerical simulators until convergence is achieved. In contrast, the one-way coupling scheme is determined by the provision of pore pressure changes calculated by the flow simulator to the geomechanical simulator neglecting any feedback. In the present study, partially-coupled two-way schemes are discussed in view of fully-coupled single-phase flow and geomechanics, and their applicability to multiphase flow simulations. For that purpose, we introduce a comparison study between the different coupling schemes, using selected benchmarks to identify the main requirements for the partially-coupled approach to converge with the numerical solution of the fully-coupled one.

  20. Pair-eigenstates and mutual alignment of coupled molecular rotors in a magnetic field.

    Science.gov (United States)

    Sharma, Ketan; Friedrich, Bretislav

    2016-05-11

    We examine the rotational states of a pair of polar (2)Σ molecules subject to a uniform magnetic field. The electric dipole-dipole interaction between the molecules creates entangled pair-eigenstates of two types. In one type, the Zeeman interaction between the inherently paramagnetic molecules and the magnetic field destroys the entanglement of the pair-eigenstates, whereas in the other type it does not. The pair-eigenstates exhibit numerous intersections, which become avoided for pair-eigenstates comprised of individual states that meet the selection rules ΔJi = 0, ± 1, ΔNi = 2n (n = 0, ±1, ±2,…), and ΔMi = 0, ± 1 imposed by the electric dipole-dipole operator. Here Ji, Ni and Mi are the total, rotational and projection angular momentum quantum numbers of molecules i = 1, 2 in the absence of the electric dipole-dipole interaction. We evaluate the mutual alignment of the pair-eigenstates and find it to be independent of the magnetic field, except for states that undergo avoided crossings, in which case the alignment of the interacting states is interchanged at the magnetic field corresponding to the crossing point. We present an analytic model which provides ready estimates of the pairwise alignment cosine that characterises the mutual alignment of the pair of coupled rotors. PMID:27126576

  1. DINAMO: a coupled sequence alignment editor/molecular graphics tool for interactive homology modeling of proteins.

    Science.gov (United States)

    Hansen, M; Bentz, J; Baucom, A; Gregoret, L

    1998-01-01

    Gaining functional information about a novel protein is a universal problem in biomedical research. With the explosive growth of the protein sequence and structural databases, it is becoming increasingly common for researchers to attempt to build a three-dimensional model of their protein of interest in order to gain information about its structure and interactions with other molecules. The two most reliable methods for predicting the structure of a protein are homology modeling, in which the novel sequence is modeled on the known three-dimensional structure of a related protein, and fold recognition (threading), where the sequence is scored against a library of fold models, and the highest scoring model is selected. The sequence alignment to a known structure can be ambiguous, and human intervention is often required to optimize the model. We describe an interactive model building and assessment tool in which a sequence alignment editor is dynamically coupled to a molecular graphics display. By means of a set of assessment tools, the user may optimize his or her alignment to satisfy the known heuristics of protein structure. Adjustments to the sequence alignment made by the user are reflected in the displayed model by color and other visual cues. For instance, residues are colored by hydrophobicity in both the three-dimensional model and in the sequence alignment. This aids the user in identifying undesirable buried polar residues. Several different evaluation metrics may be selected including residue conservation, residue properties, and visualization of predicted secondary structure. These characteristics may be mapped to the model both singly and in combination. DINAMO is a Java-based tool that may be run either over the web or installed locally. Its modular architecture also allows Java-literate users to add plug-ins of their own design.

  2. Numerical solutions of coupled Burgers’ equations by an implicit finite-difference scheme

    OpenAIRE

    Srivastava, Vineet K.; Sarita Singh; Mukesh K. Awasthi

    2013-01-01

    In this paper, an implicit exponential finite-difference scheme (Expo FDM) has been proposed for solving two dimensional nonlinear coupled viscous Burgers’ equations (VBEs) with appropriate initial and boundary conditions. The accuracy of the method has been illustrated by taking two numerical examples. Results are compared with exact solution and those already available in the literature by finding the L1, L2, L∞ and ER errors. Excellent numerical results indicate that the proposed scheme is...

  3. Simulation of coupled flow and mechanical deformation using IMplicit Pressure-Displacement Explicit Saturation (IMPDES) scheme

    KAUST Repository

    El-Amin, Mohamed

    2012-01-01

    The problem of coupled structural deformation with two-phase flow in porous media is solved numerically using cellcentered finite difference (CCFD) method. In order to solve the system of governed partial differential equations, the implicit pressure explicit saturation (IMPES) scheme that governs flow equations is combined with the the implicit displacement scheme. The combined scheme may be called IMplicit Pressure-Displacement Explicit Saturation (IMPDES). The pressure distribution for each cell along the entire domain is given by the implicit difference equation. Also, the deformation equations are discretized implicitly. Using the obtained pressure, velocity is evaluated explicitly, while, using the upwind scheme, the saturation is obtained explicitly. Moreover, the stability analysis of the present scheme has been introduced and the stability condition is determined.

  4. Fast modulation scheme for a two laterally coupled laser diode array

    Energy Technology Data Exchange (ETDEWEB)

    Carpintero, G.; Lamela, H.; Leones, M.; Simmendinger, C.; Hess, O.

    2001-06-25

    The present letter reports a modulation scheme that takes advantage of the unique characteristics of a two laterally coupled laser diode (also known as twin stripe array) to overcome the limit on the modulation imposed by the laser{close_quote}s relaxation oscillation frequency. Through the use of the rate equation description of the device we uncover the device dynamics behind the modulation scheme generating 35 ps (full width at half maximum) laser pulses at 8 Gb/s modulation rate. Our scheme relies on the fast dynamics of the phase difference, controlled by means of the current injection on each stripe. {copyright} 2001 American Institute of Physics.

  5. Induced alignment and measurement of dipolar couplings of an SH2 domain through direct binding with filamentous phage

    Energy Technology Data Exchange (ETDEWEB)

    Dahlke Ojennus, Deanna; Mitton-Fry, Rachel M.; Wuttke, Deborah S. [University of Colorado, Department of Chemistry and Biochemistry (United States)

    1999-06-15

    Large residual {sup 15}N-{sup 1}H dipolar couplings have been measured in a Src homology II domain aligned at Pf1 bacteriophage concentrations an order of magnitude lower than used for induction of a similar degree of alignment of nucleic acids and highly acidic proteins. An increase in {sup 1} H and {sup 15}N protein linewidths and a decrease in T{sub 2} and T{sub 1}{rho} relaxation time constants implicates a binding interaction between the protein and phage as the mechanism of alignment. However, the associated increased linewidth does not preclude the accurate measurement of large dipolar couplings in the aligned protein. A good correlation is observed between measured dipolar couplings and predicted values based on the high resolution NMR structure of the SH2 domain. The observation of binding-induced protein alignment promises to broaden the scope of alignment techniques by extending their applicability to proteins that are able to interact weakly with the alignment medium.

  6. A new coupled computational method in conjunction with three-dimensional finite volume schemes for nonlinear coupled constitutive relations

    CERN Document Server

    Jiang, Zhongzheng; Zhao, Wenwen

    2016-01-01

    Non-equilibrium effects play a vital role in high-speed and rarefied gas flows and the accurate simulation of these flow regimes are far beyond the capability of near-local-equilibrium Navier-Stokes-Fourier equations. Eu proposed generalized hydrodynamic equations which are consistent with the laws of irreversible thermodynamics to solve this problem. Based on Eu's generalized hydrodynamics equations, a computational model, namely the nonlinear coupled constitutive relations(NCCR),was developed by R.S.Myong and applied successfully to one-dimensional shock wave structure and two-dimensional rarefied flows. In this paper, finite volume schemes, including LU-SGS time advance scheme, MUSCL interpolation and AUSMPW+ scheme, are fistly adopted to investigate NCCR model's validity and potential in three-dimensional complex hypersonic rarefied gas flows. Moreover, in order to solve the computational stability problems in 3D complex flows,a modified solution is developed for the NCCR model. Finally, the modified solu...

  7. A loosely-coupled scheme for the interaction between a fluid, elastic structure and poroelastic material

    Science.gov (United States)

    Bukač, M.

    2016-05-01

    We model the interaction between an incompressible, viscous fluid, thin elastic structure and a poroelastic material. The poroelastic material is modeled using the Biot's equations of dynamic poroelasticity. The fluid, elastic structure and the poroelastic material are fully coupled, giving rise to a nonlinear, moving boundary problem with novel energy estimates. We present a modular, loosely coupled scheme where the original problem is split into the fluid sub-problem, elastic structure sub-problem and poroelasticity sub-problem. An energy estimate associated with the stability of the scheme is derived in the case where one of the coupling parameters, β, is equal to zero. We present numerical tests where we investigate the effects of the material properties of the poroelastic medium on the fluid flow. Our findings indicate that the flow patterns highly depend on the storativity of the poroelastic material and cannot be captured by considering fluid-structure interaction only.

  8. A Self-synchronizing Stream Encryption Scheme Based on One-Dimensional Coupled Map Lattices

    Institute of Scientific and Technical Information of China (English)

    MA Hui; ZHU Kai-En; CHEN Tian-Lun

    2007-01-01

    We present a self-synchronizing stream encryption scheme based on one-dimensional coupled map lattices which is introduced as a model with the essential features of spatiotemporal chaos,and of great complexity and diffusion capability of the little disturbance in the initial condition.To evaluate the scheme,a series of statistical tests are employed,and the results show good random-look nature of the ciphertext.Furthermore,we apply our algorithm to encrypt a grey-scale image to show the key sensitivity.

  9. A stable scheme for computation of coupled transport and equilibrium equations in tokamaks

    Science.gov (United States)

    Fable, E.; Angioni, C.; Ivanov, A. A.; Lackner, K.; Maj, O.; Yu, S.; Medvedev; Pautasso, G.; Pereverzev, G. V.

    2013-03-01

    The coupled system consisting of 1D radial transport equations and the quasi-static 2D magnetic equilibrium equation for axisymmetric systems (tokamaks) is known to be prone to numerical instabilities, either due to propagation of numerical errors in the iteration process, or due to the choice of the numerical scheme itself. In this paper, a possible origin of these instabilities, specifically associated with the latter condition, is discussed and an approach is chosen, which is shown to have good accuracy and stability properties. This scheme is proposed to be used within those codes for which the poloidal flux ψ is the quantity solved for in the current diffusion equation. Mathematical arguments are used to study the convergence properties of the proposed scheme.

  10. A Systematic Search for New Coupling Schemes of Cross-Coupled Resonator Bandpass Filters

    Directory of Open Access Journals (Sweden)

    A. Lamecki

    2014-09-01

    Full Text Available In this paper, a systematic approach to an extensive search for topologies of cross-coupled filters with generalized Chebyshev response is presented. The technique applies graph theory to find unique, nonisomorphic filter configurations, and tests whether a specific frequency response can be realized in a given set of topologies. The results of the search are then stored in a database of possible filter configurations.

  11. Hybrid model for the Coupling of an Asymptotic Preserving scheme with the Asymptotic Limit model: The One Dimensional Case⋆

    OpenAIRE

    Narski Jacek; Negulescu Claudia; Maldarella Dario; Degond Pierre; Deluzet Fabrice; Parisot Martin

    2011-01-01

    International audience In this paper a strategy is investigated for the spatial coupling of an asymptotic preserving scheme with the asymptotic limit model, associated to a singularly perturbed, highly anisotropic, ellip-tic problem. This coupling strategy appears to be very advantageous as compared with the numerical discretization of the initial singular perturbation model or the purely asymptotic preserving scheme introduced in previous works [3, 5]. The model problem addressed in this ...

  12. Variational approach to low-frequency kinetic-MHD in the current coupling scheme

    CERN Document Server

    Burby, J W

    2016-01-01

    Hybrid kinetic-MHD models describe the interaction of an MHD bulk fluid with an ensemble of hot particles, which is described by a kinetic equation. When the Vlasov description is adopted for the energetic particles, different Vlasov-MHD models have been shown to lack an exact energy balance, which was recently recovered by the introduction of non-inertial force terms in the kinetic equation. These force terms arise from fundamental approaches based on Hamiltonian and variational methods. In this work we apply Hamilton's variational principle to formulate new current-coupling kinetic-MHD models in the low-frequency approximation (i.e. large Larmor frequency limit). More particularly, we formulate current-coupling hybrid schemes, in which energetic particle dynamics are expressed in either guiding-center or gyrocenter coordinates.

  13. Flux-torque cross-coupling analysis of FOC schemes: Novel perturbation rejection characteristics.

    Science.gov (United States)

    Amezquita-Brooks, Luis; Liceaga-Castro, Eduardo; Liceaga-Castro, Jesús; Ugalde-Loo, Carlos E

    2015-09-01

    Field oriented control (FOC) is one of the most successful control schemes for electrical machines. In this article new properties of FOC schemes for induction motors (IMs) are revealed by studying the cross-coupling of the flux-torque subsystem. Through the use of frequency-based multivariable tools, it is shown that FOC has intrinsic stator currents disturbance rejection properties due to the existence of a transmission zero in the flux-torque subsystem. These properties can be exploited in order to select appropriate feedback loop configurations. One of the major drawbacks of FOC schemes is their high sensitivity to slip angular velocity perturbations. These perturbations are related to variations of the rotor time constant, which are known to be problematic for IM control. In this regard, the effect that slip angular velocity perturbations have over the newly found perturbation rejection properties is also studied. In particular, although perturbation rejection is maintained, deviations to the equilibrium point are induced; this introduces difficulties for simultaneous flux and torque control. The existence of equilibrium point issues when flux and torque are simultaneously controlled is documented for the first time in this article. PMID:26187346

  14. Implicit scheme for integrating constitutive model of unsaturated soils with coupling hydraulic and mechanical behavior

    Institute of Scientific and Technical Information of China (English)

    马田田; 韦昌富; 陈盼; 魏厚振

    2014-01-01

    A constitutive model of unsaturated soils with coupling capillary hystere-sis and skeleton deformation is developed and implemented in a fully coupled transient hydro-mechanical finite-element model (computer code U-DYSAC2). The obtained re-sults are compared with experimental results, showing that the proposed constitutive model can simulate the main mechanical and hydraulic behavior of unsaturated soils in a unified framework. The non-linearity of the soil-water characteristic relation is treated in a similar way of elastoplasticity. Two constitutive relations are integrated by an implicit return-mapping scheme similar to that developed for saturated soils. A consistent tan-gential modulus is derived to preserve the asymptotic rate of the quadratic convergence of Newton’s iteration. Combined with the integration of the constitutive model, a complete finite-element formulation of coupling hydro-mechanical problems for unsaturated soils is presented. A number of practical problems with different given initial and boundary conditions are analyzed to illustrate the performance and capabilities of the finite-element model.

  15. Comparison of different coupling schemes between counterions and charged nanoparticles in multiparticle collision dynamics

    Science.gov (United States)

    Dahirel, Vincent; Zhao, Xudong; Jardat, Marie

    2016-08-01

    We applied the multiparticle collision dynamics (MPC) simulation technique to highly asymmetric electrolytes in solution, i.e., charged nanoparticles and their counterions in a solvent. These systems belong to a domain of solute size which ranges between the electrolyte and the colloidal domains, where most analytical theories are expected to fail, and efficient simulation techniques are still missing. MPC is a mesoscopic simulation method which mimics hydrodynamics properties of a fluid, includes thermal fluctuations, and can be coupled to a molecular dynamics of solutes. We took advantage of the size asymmetry between nanoparticles and counterions to treat the coupling between solutes and the solvent bath within the MPC method. Counterions were coupled to the solvent bath during the collision step and nanoparticles either through a direct interaction force or with stochastic rotation rules which mimic stick boundary conditions. Moreover, we adapted the simulation procedure to address the issue of the strong electrostatic interactions between solutes of opposite charges. We show that the short-ranged repulsion between counterions and nanoparticles can be modeled by stochastic reflection rules. This simulation scheme is very efficient from a computational point of view. We have also computed the transport coefficients for various densities. The diffusion of counterions was found in one case to increase slightly with the volume fraction of nanoparticles. The deviation of the electric conductivity from the ideal behavior (solutes at infinite dilution without any direct interactions) is found to be strong.

  16. Transition among synchronous schemes in coupled nonidentical multiple time delay systems

    Energy Technology Data Exchange (ETDEWEB)

    Thang Manh Hoang [Department of Electronics and Informatics, Faculty of Electronics and Telecommunications, Hanoi University of Technology, 1 Dai Co Viet, Hanoi (Viet Nam)], E-mail: hmt@mail.hut.edu.vn

    2009-10-30

    We present the transition among possible synchronous schemes in coupled nonidentical multiple time delay systems, i.e., lag, projective-lag, complete, anticipating and projective-anticipating synchronization. The number of nonlinear transforms in the master's equation can be different from that in slave's, and nonlinear transforms can be in various forms. The driving signal is the sum of nonlinearly transformed components of delayed state variable. Moreover, the equation representing for driving signal is constructed exactly so that the difference between the master's and slave's structures is complemented. The sufficient condition for synchronization is considered by the Krasovskii-Lyapunov theory. The specific examples will demonstrate and verify the effectiveness of the proposed models.

  17. A coupled model tree genetic algorithm scheme for flow and water quality predictions in watersheds

    Science.gov (United States)

    Preis, Ami; Ostfeld, Avi

    2008-02-01

    SummaryThe rapid advance in information processing systems along with the increasing data availability have directed research towards the development of intelligent systems that evolve models of natural phenomena automatically. This is the discipline of data driven modeling which is the study of algorithms that improve automatically through experience. Applications of data driven modeling range from data mining schemes that discover general rules in large data sets, to information filtering systems that automatically learn users' interests. This study presents a data driven modeling algorithm for flow and water quality load predictions in watersheds. The methodology is comprised of a coupled model tree-genetic algorithm scheme. The model tree predicts flow and water quality constituents while the genetic algorithm is employed for calibrating the model tree parameters. The methodology is demonstrated through base runs and sensitivity analysis for daily flow and water quality load predictions on a watershed in northern Israel. The method produced close fits in most cases, but was limited in estimating the peak flows and water quality loads.

  18. Scalar correlator, Higgs decay into quarks, and scheme variations of the QCD coupling

    CERN Document Server

    Jamin, Matthias

    2016-01-01

    In this work, the perturbative QCD series of the scalar correlation function $\\Psi(s)$ is investigated. Besides ${\\rm Im}\\Psi(s)$, which is relevant for Higgs decay into quarks, two other physical correlators, $\\Psi^{''}(s)$ and $D^L(s)$, have been employed in QCD applications like quark mass determinations or hadronic $\\tau$ decays. $D^L(s)$ suffers from large higher-order corrections and, by resorting to the large-$\\beta_0$ approximation, it is shown that this is related to a spurious renormalon ambiguity at $u=1$. Hence, this correlator should be avoided in phenomenological analyses. Moreover, it turns out advantageous to express the quark mass factor, introduced to make the scalar current renormalisation group invariant, in terms of the renormalisation invariant quark mass $\\widehat m_q$. To further study the behaviour of the perturbative expansion, we introduce a QCD coupling $\\widehat\\alpha_s$, whose running is explicitly renormalisation scheme independent. The scheme dependence of $\\widehat\\alpha_s$ is...

  19. Derivation of a stable coupling scheme for Monte Carlo burnup calculations with the thermal-hydraulic feedback

    OpenAIRE

    Dufek, Jan; Anglart, Henryk

    2013-01-01

    Numerically stable Monte Carlo burnup calculations of nuclear fuel cycles are now possible with the previously derived Stochastic Implicit Euler method based coupling scheme. In this paper, we show that this scheme can be easily extended to include the thermal-hydraulic feedback during the Monte Carlo burnup simulations, while preserving its unconditional stability property. At each time step, the implicit solution (for the end-of-step neutron flux, fuel nuclide densities and thermal-hydrauli...

  20. A parallel finite element scheme for thermo-hydro-mechanical (THM) coupled problems in porous media

    Science.gov (United States)

    Wang, Wenqing; Kosakowski, Georg; Kolditz, Olaf

    2009-08-01

    Many applied problems in geoscience require knowledge about complex interactions between multiple physical and chemical processes in the sub-surface. As a direct experimental investigation is often not possible, numerical simulation is a common approach. The numerical analysis of coupled thermo-hydro-mechanical (THM) problems is computationally very expensive, and therefore the applicability of existing codes is still limited to simplified problems. In this paper we present a novel implementation of a parallel finite element method (FEM) for the numerical analysis of coupled THM problems in porous media. The computational task of the FEM is partitioned into sub-tasks by a priori domain decomposition. The sub-tasks are assigned to the CPU nodes concurrently. Parallelization is achieved by simultaneously establishing the sub-domain mesh topology, synchronously assembling linear equation systems in sub-domains and obtaining the overall solution with a sub-domain linear solver (parallel BiCGStab method with Jacobi pre-conditioner). The present parallelization method is implemented in an object-oriented way using MPI for inter-processor communication. The parallel code was successfully tested with a 2-D example from the international DECOVALEX benchmarking project. The achieved speed-up for a 3-D extension of the test example on different computers demonstrates the advantage of the present parallel scheme.

  1. Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel

    Directory of Open Access Journals (Sweden)

    Alachiotis Nikolaos

    2012-08-01

    Full Text Available Abstract Background Aligning short DNA reads to a reference sequence alignment is a prerequisite for detecting their biological origin and analyzing them in a phylogenetic context. With the PaPaRa tool we introduced a dedicated dynamic programming algorithm for simultaneously aligning short reads to reference alignments and corresponding evolutionary reference trees. The algorithm aligns short reads to phylogenetic profiles that correspond to the branches of such a reference tree. The algorithm needs to perform an immense number of pairwise alignments. Therefore, we explore vector intrinsics and GPUs to accelerate the PaPaRa alignment kernel. Results We optimized and parallelized PaPaRa on CPUs and GPUs. Via SSE 4.1 SIMD (Single Instruction, Multiple Data intrinsics for x86 SIMD architectures and multi-threading, we obtained a 9-fold acceleration on a single core as well as linear speedups with respect to the number of cores. The peak CPU performance amounts to 18.1 GCUPS (Giga Cell Updates per Second using all four physical cores on an Intel i7 2600 CPU running at 3.4 GHz. The average CPU performance (averaged over all test runs is 12.33 GCUPS. We also used OpenCL to execute PaPaRa on a GPU SIMT (Single Instruction, Multiple Threads architecture. A NVIDIA GeForce 560 GPU delivered peak and average performance of 22.1 and 18.4 GCUPS respectively. Finally, we combined the SIMD and SIMT implementations into a hybrid CPU-GPU system that achieved an accumulated peak performance of 33.8 GCUPS. Conclusions This accelerated version of PaPaRa (available at http://www.exelixis-lab.org/software.html provides a significant performance improvement that allows for analyzing larger datasets in less time. We observe that state-of-the-art SIMD and SIMT architectures deliver comparable performance for this dynamic programming kernel when the “competing programmer approach” is deployed. Finally, we show that overall performance can be substantially increased

  2. Hybrid model for the Coupling of an Asymptotic Preserving scheme with the Asymptotic Limit model: The One Dimensional Case⋆

    Directory of Open Access Journals (Sweden)

    Narski Jacek

    2011-11-01

    Full Text Available In this paper a strategy is investigated for the spatial coupling of an asymptotic preserving scheme with the asymptotic limit model, associated to a singularly perturbed, highly anisotropic, elliptic problem. This coupling strategy appears to be very advantageous as compared with the numerical discretization of the initial singular perturbation model or the purely asymptotic preserving scheme introduced in previous works [3, 5]. The model problem addressed in this paper is well suited for the simulation of a plasma in the presence of a magnetic field, whose intensity may vary considerably within the simulation domain.

  3. Land-atmosphere interactions in an high resolution atmospheric simulation coupled with a surface data assimilation scheme

    Science.gov (United States)

    Campo, L.; Castelli, F.; Entekhabi, D.; Caparrini, F.

    2009-09-01

    A valid tool for the retrieving of the turbulent fluxes that characterize the surface energy budget is constituted by the remote sensing of land surface states. In this study sequences of satellite-derived observations (from SEVIRI sensors aboard the Meteosat Second Generation) of Land Surface Temperature have been used as input in a data assimilation scheme in order to retrieve parameters that describe energy balance at the ground surface in the Tuscany region, in central Italy, during summer 2005. A parsimonious 1-D multiscale variational assimilation procedure has been followed, that requires also near surface meteorological observations. A simplified model of the surface energy balance that includes such assimilation scheme has been coupled with the limited area atmospheric model RAMS, in order to improve in the latter the accuracy of the energy budget at the surface. The coupling has been realized replacing the assimilation scheme products, in terms of surface turbulent fluxes and temperature and humidity states during the meteorological simulation. Comparisons between meteorological model results with and without coupling with the assimilation scheme are discussed, both in terms of reconstruction of surface variables and of vertical characterization of the lower atmosphere. In particular, the effects of the coupling on the moisture feedback between surface and atmosphere are considered and estimates of the precipitation recycling ratio are provided. The results of the coupling experiment showed improvements in the reconstruction of the surface states by the atmospheric model and considerable influence on the atmospheric dynamics.

  4. Uncertainty Propagation and Quantification using Constrained Coupled Adaptive Forward-Inverse Schemes: Theory and Applications

    Science.gov (United States)

    Ryerson, F. J.; Ezzedine, S. M.; Antoun, T.

    2013-12-01

    equation for the distribution of k is solved, provided that Cauchy data are appropriately assigned. In the next stage, only a limited number of passive measurements are provided. In this case, the forward and inverse PDEs are solved simultaneously. This is accomplished by adding regularization terms and filtering the pressure gradients in the inverse problem. Both the forward and the inverse problem are either simultaneously or sequentially coupled and solved using implicit schemes, adaptive mesh refinement, Galerkin finite elements. The final case arises when P, k, and Q data only exist at producing wells. This exceedingly ill posed problem calls for additional constraints on the forward-inverse coupling to insure that the production rates are satisfied at the desired locations. Results from all three cases are presented demonstrating stability and accuracy of the proposed approach and, more importantly, providing some insights into the consequences of data under sampling, uncertainty propagation and quantification. We illustrate the advantages of this novel approach over the common UQ forward drivers on several subsurface energy problems in either porous or fractured or/and faulted reservoirs. This work performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  5. A Self-Aligned a-IGZO Thin-Film Transistor Using a New Two-Photo-Mask Process with a Continuous Etching Scheme

    Directory of Open Access Journals (Sweden)

    Ching-Lin Fan

    2014-08-01

    Full Text Available Minimizing the parasitic capacitance and the number of photo-masks can improve operational speed and reduce fabrication costs. Therefore, in this study, a new two-photo-mask process is proposed that exhibits a self-aligned structure without an etching-stop layer. Combining the backside-ultraviolet (BUV exposure and backside-lift-off (BLO schemes can not only prevent the damage when etching the source/drain (S/D electrodes but also reduce the number of photo-masks required during fabrication and minimize the parasitic capacitance with the decreasing of gate overlap length at same time. Compared with traditional fabrication processes, the proposed process yields that thin-film transistors (TFTs exhibit comparable field-effect mobility (9.5 cm2/V·s, threshold voltage (3.39 V, and subthreshold swing (0.3 V/decade. The delay time of an inverter fabricated using the proposed process was considerably decreased.

  6. Pair-eigenstates and mutual alignment of coupled molecular rotors in a magnetic field

    CERN Document Server

    Sharma, Ketan

    2016-01-01

    We examine the rotational states of a pair of polar $^2\\Sigma$ molecules subject to a uniform magnetic field. The electric dipole-dipole interaction between the molecules creates entangled pair-eigenstates of two types. In one type, the Zeeman interaction between the inherently paramagnetic molecules and the magnetic field destroys the entanglement of the pair-eigenstates, whereas in the other type it does not. The pair-eigenstates exhibit numerous intersections, which become avoided for pair-eigenstates comprised of individual states that meet the selection rules $\\Delta J_{i}=0,\\pm 1$, $\\Delta N_{i}=0,\\pm 2$, and $\\Delta M_{i}=0,\\pm 1$ imposed by the electric dipole-dipole operator. Here $J_{i}$, $N_{i}$ and $M_{i}$ are the total, rotational and projection angular momentum quantum numbers of molecules $i=1,2$ in the absence of the electric dipole-dipole interaction. We evaluate the mutual alignment of the pair-eigenstates and find it to be independent of the magnetic field, except for states that undergo av...

  7. Long range emission enhancement and anisotropy in coupled quantum dots induced by aligned gold nanoantenna

    International Nuclear Information System (INIS)

    Quantum dot arrays have been projected as the material of choice for next generation displays and photodetectors. Extensive ongoing research aims at improving optical and electrical efficiencies of such devices. We report experimental results on non-local long range emission intensity enhancement and anisotropy in quantum dot assemblies induced by isolated and partially aligned gold nanoantennas. Spatially resolved photoluminescence clearly demonstrate that the effect is maximum, when the longitudinal surface plasmon resonance of the nanoantenna is resonant with the emission maxima of the quantum dots. We estimated the decay length of this enhancement to be ∼2.6 μm, which is considerably larger than the range of near field interaction of metal nanoantenna. Numerical simulations qualitatively capture the near field behavior of the nanorods but fail to match the experimentally observed non-local effects. We have suggested how strong interactions of quantum dots in the close packed assemblies, mediated by the nanoantennas, could lead to such observed behavior.

  8. Long range emission enhancement and anisotropy in coupled quantum dots induced by aligned gold nanoantenna

    Energy Technology Data Exchange (ETDEWEB)

    Tripathi, L. N.; Praveena, M.; Valson, Pranay; Basu, J. K., E-mail: basu@physics.iisc.ernet.in [Department of Physics, Indian Institute of Science, Bangalore 560012 (India)

    2014-10-20

    Quantum dot arrays have been projected as the material of choice for next generation displays and photodetectors. Extensive ongoing research aims at improving optical and electrical efficiencies of such devices. We report experimental results on non-local long range emission intensity enhancement and anisotropy in quantum dot assemblies induced by isolated and partially aligned gold nanoantennas. Spatially resolved photoluminescence clearly demonstrate that the effect is maximum, when the longitudinal surface plasmon resonance of the nanoantenna is resonant with the emission maxima of the quantum dots. We estimated the decay length of this enhancement to be ∼2.6 μm, which is considerably larger than the range of near field interaction of metal nanoantenna. Numerical simulations qualitatively capture the near field behavior of the nanorods but fail to match the experimentally observed non-local effects. We have suggested how strong interactions of quantum dots in the close packed assemblies, mediated by the nanoantennas, could lead to such observed behavior.

  9. A generic data translation scheme for the coupling of high-fidelity fusion neutronics and CFD calculations

    International Nuclear Information System (INIS)

    Highlights: • A data translation scheme has been developed for coupling Monte Carlo neutronics and CFD simulations. • It contains a generic data translation kernel, and interfaces for the MCNP, CFX and Fluent code. • A blanket test case model was investigated for validation and verification purposes. • Results of the so-called Inversion Check are very close to MCNP calculated results. - Abstract: The design of fusion device components is achieved through iterative coupled neutronics and thermal hydraulics analyses. A translation scheme has been developed for transferring the nuclear heating data from Monte Carlo (MC) neutronic calculations to CFD simulations. It contains a generic data translation kernel which supports the high-fidelity data mapping of MC meshes on CFD meshes, and provides interfaces for processing the nuclear response data on the meshes for CFD codes. This translation scheme has been implemented in the open-source pre- and post-processing platform SALOME to extend its capabilities on data manipulations and visualizations. For verification purposes, a blanket test case based on the Helium Cooled Pebble Bed Test Blanket Module was investigated. The processing of the heating distribution data was validated through a so-called Inversion Check comparing the inverted heating field with the original MC tally distribution. The results of the verification have been discussed in detail, and the reliability of the data translation scheme is concluded

  10. A parametric study of the coupling between sheared flows at the magnetopause and field-aligned currents, precipitating energy flux and auroral arcs

    Science.gov (United States)

    Echim, M.; De Keyser, J. M.; Maggiolo, R.

    2012-12-01

    In the topside ionosphere the field-aligned currents connect to perpendicular, Pedersen and Hall, currents. The current continuity provides a mathematical closure condition that "couples" field-aligned properties, like the parallel electric fields, to ionospheric properties, like the height-integrated Pedersen conductivity. The current-voltage relation (CVR) describes the field-aligned current density (j||) as a function of the field-aligned potential drop (ΔΦ) between the magnetosphere and the ionosphere, as well as the plasma properties in the magnetosphere and in the ionosphere. The CVR is generally obtained from a kinetic treatment of the adiabatic motion of particles in a mirroring magnetic field and a field-aligned electric field. We investigate the coupling between sheared flows at the magnetopause, described by a Vlasov equilibrium solution, and field aligned currents and auroral arcs. The model solves the current continuity equation and neglects the divergence of the Hall currents. The solutions evidence channels of precipitating accelerated particles producing auroral arcs, upward field-aligned currents and regions of enhanced Pedersen conductance. We investigate the effects due to variations of generator properties, particularly of the velocity shear at the magnetopause, and of the gradient of the kinetic pressure, on the characteristics of the auroral structures. An increased shear of velocity at the magnetopause generates brighter arcs and larger field-aligned current densities due to the increasing of the field-aligned potential drop. The solutions of the parametric study are discussed in the context of the mechanisms for polar cap arcs formation.

  11. Communication: Spin densities within a unitary group based spin-adapted open-shell coupled-cluster theory: Analytic evaluation of isotropic hyperfine-coupling constants for the combinatoric open-shell coupled-cluster scheme

    International Nuclear Information System (INIS)

    We report analytical calculations of isotropic hyperfine-coupling constants in radicals using a spin-adapted open-shell coupled-cluster theory, namely, the unitary group based combinatoric open-shell coupled-cluster (COSCC) approach within the singles and doubles approximation. A scheme for the evaluation of the one-particle spin-density matrix required in these calculations is outlined within the spin-free formulation of the COSCC approach. In this scheme, the one-particle spin-density matrix for an open-shell state with spin S and MS = + S is expressed in terms of the one- and two-particle spin-free (charge) density matrices obtained from the Lagrangian formulation that is used for calculating the analytic first derivatives of the energy. Benchmark calculations are presented for NO, NCO, CH2CN, and two conjugated π-radicals, viz., allyl and 1-pyrrolyl in order to demonstrate the performance of the proposed scheme

  12. Vertically aligned Si nanocrystals embedded in amorphous Si matrix prepared by inductively coupled plasma chemical vapor deposition (ICP-CVD)

    International Nuclear Information System (INIS)

    Highlights: • Inductively-coupled plasma is used for nanostructured silicon at room temperature. • Low temperature deposition allows device processing on various substrates. • Deposition pressure is the most effective parameter in controlling nanostructure. • Films consist of quantum dots in a-Si matrix and exhibit columnar vertical growth. • Films are porous to oxygen infusion along columnar grain boundaries. - Abstract: Vertically-aligned nanostructured silicon films are deposited at room temperature on p-type silicon wafers and glass substrates by inductively-coupled, plasma-enhanced chemical vapor deposition (ICPCVD). The nanocrystalline phase is achieved by reducing pressure and increasing RF power. The crystalline volume fraction (Xc) and the size of the nanocrystals increase with decreasing pressure at constant power. Columnar growth of nc-Si:H films is observed by high resolution transmission electron microscopy (HRTEM) and scanning electron microscopy (SEM). The films exhibit cauliflower-like structures with high porosity that leads to slow but uniform oxidation after exposure to air at room temperature. Films deposited at low pressures exhibit photoluminescence (PL) signals that may be deconvoluted into three distinct Gaussian components: 760–810, 920–935, and 990–1000 nm attributable to the quantum confinement and interface defect states. Hydrogen dilution is manifested in significant enhancement of the PL, but it has little effect on the nanocrystal size and Xc

  13. Magnetosphere-ionosphere coupling currents in Jupiter's middle magnetosphere: effect of magnetosphere-ionosphere decoupling by field-aligned auroral voltages

    Directory of Open Access Journals (Sweden)

    J. D. Nichols

    2005-03-01

    Full Text Available We consider the effect of field-aligned voltages on the magnetosphere-ionosphere coupling current system associated with the breakdown of rigid corotation of equatorial plasma in Jupiter's middle magnetosphere. Previous analyses have assumed perfect mapping of the electric field and flow along equipotential field lines between the equatorial plane and the ionosphere, whereas it has been shown that substantial field-aligned voltages must exist to drive the field-aligned currents associated with the main auroral oval. The effect of these field-aligned voltages is to decouple the flow of the equatorial and ionospheric plasma, such that their angular velocities are in general different from each other. In this paper we self-consistently include the field-aligned voltages in computing the plasma flows and currents in the system. A third order differential equation is derived for the ionospheric plasma angular velocity, and a power series solution obtained which reduces to previous solutions in the limit that the field-aligned voltage is small. Results are obtained to second order in the power series, and are compared to the original zeroth order results with no parallel voltage. We find that for system parameters appropriate to Jupiter the effect of the field-aligned voltages on the solutions is small, thus validating the results of previously-published analyses.

  14. Approximation scheme for classical surface plasmas at strong coupling: Progress in the formulation of a dynamical theory

    International Nuclear Information System (INIS)

    A self-consistent approximation scheme is formulated for the calculation of the dynamical linear polarizability of classical electron monolayers. The derivation is carried out in two stages. In the first stage, the authors formulate a simple response function relation linking linear and quadratic polarizabilities; the dynamical coupling function is expressed entirely in terms of the latter. The basic elements in the derivation are the first BBGKY kinetic equation (prepared in the velocity average approximation) and the non-linear fluctuation-dissipation theorem. The new response function relation is exact at zero frequency and exactly satisfies the third frequency moment sum rule. In the second stage, self-consistency is guaranteed by approximating the quadratic polarizability in terms of linear ones. The theory is examined in the weak coupling limit where it is found that a dominant γ-independent non-RPA contribution to the damping is missing. The structure of the missing term is identified at arbitrary coupling strengths. Work is in progress to see how it can be incorporated into the approximation scheme. (author)

  15. An advanced scheme for wet scavenging and liquid-phase chemistry in a regional online-coupled chemistry transport model

    Directory of Open Access Journals (Sweden)

    C. Knote

    2012-10-01

    Full Text Available Clouds are reaction chambers for atmospheric trace gases and aerosols, and the associated precipitation is a major sink for atmospheric constituents. The regional chemistry-climate model COSMO-ART has been lacking a description of wet scavenging of gases and aqueous-phase chemistry. In this work we present a coupling of COSMO-ART with a wet scavenging and aqueous-phase chemistry scheme. The coupling is made consistent with the cloud microphysics scheme of the underlying meteorological model COSMO. While the choice of the aqueous-chemistry mechanism is flexible, the effects of a simple sulfur oxidation scheme are shown in the application of the coupled system in this work. We give details explaining the coupling and extensions made, then present results from idealized flow-over-hill experiments in a 2-D model setup and finally results from a full 3-D simulation. Comparison against measurement data shows that the scheme efficiently reduces SO2 trace gas concentrations by 0.3 ppbv (−30% on average, while leaving O3 and NOx unchanged. PM10 aerosol mass, which has been overestimated previously, is now in much better agreement with measured values due to a stronger scavenging of coarse particles. While total PM2.5 changes only little, chemical composition is improved notably. Overestimations of nitrate aerosols are reduced by typically 0.5–1 μg m−3 (up to −2 μg m−3 in the Po Valley while sulfate mass is increased by 1–1.5 μg m−3 on average (up to 2.5 μg m−3 in Eastern Europe. The effect of cloud processing of aerosols on its size distribution, i. e. a shift towards larger diameters, is observed. Compared against wet deposition measurements the system underestimates the total wet deposited mass for the simulated case study. We find that while evaporation of cloud droplets dominates in higher altitudes, evaporation of precipitation can

  16. Strong-coupling constant with flavor thresholds at five loops in the anti M anti S scheme

    Energy Technology Data Exchange (ETDEWEB)

    Kniehl, B.A.; Kotikov, A.V.; Onishchenko, A.I.; Veretin, O.L. [Hamburg Univ. (Germany). 2. Inst. fuer Theoretische Physik

    2006-07-15

    We present in analytic form the matching conditions for the strong-coupling constant {alpha}{sub s}{sup (n{sub f})}({mu}) at the flavor thresholds to four loops in the modified minimal-subtraction scheme. Taking into account the present knowledge on the coefficient {beta}{sub 4} of the Callan-Symanzik beta function of quantum chromo-dynamics, we thus derive a five-loop formula for {alpha}{sub s}{sup (n{sub f})}({mu}) together with appropriate relationships between the asymptotic scale parameters {lambda}{sup (n{sub f})} for different numbers of flavors n{sub f}. (Orig.)

  17. An Efficient Explicit Finite-Difference Scheme for Simulating Coupled Biomass Growth on Nutritive Substrates

    Directory of Open Access Journals (Sweden)

    G. F. Sun

    2015-01-01

    Full Text Available A novel explicit finite-difference (FD method is presented to simulate the positive and bounded development process of a microbial colony subjected to a substrate of nutrients, which is governed by a nonlinear parabolic partial differential equations (PDE system. Our explicit FD scheme is uniquely designed in such a way that it transfers the nonlinear terms in the original PDE into discrete sets of linear ones in the algebraic equation system that can be solved very efficiently, while ensuring the stability and the boundedness of the solution. This is achieved through (1 a proper design of intertwined FD approximations for the diffusion function term in both time and spatial variations and (2 the control of the time-step through establishing theoretical stability criteria. A detailed theoretical stability analysis is conducted to reveal that our FD method is indeed stable. Our examples verified the fact that the numerical solution can be ensured nonnegative and bounded to simulate the actual physics. Numerical examples have also been presented to demonstrate the efficiency of the proposed scheme. The present scheme is applicable for solving similar systems of PDEs in the investigation of the dynamics of biological films.

  18. High-order Spatio-temporal Schemes for Coupled, Multi-physics Reactor Simulations

    Energy Technology Data Exchange (ETDEWEB)

    Mr. Vijay S. Mahadevan; Dr. Jean C. Ragusa

    2008-09-01

    This report summarizes the work done in the summer of 08 by the Ph.D. student Vijay Mahadevan. The main focus of the work was to coupled 3-D neutron difusion to 3-D heat conduction in parallel with accuracy greater than or equal to 2nd order in space and time. Results show that the goal was attained.

  19. Impact of Stochastic Parameterization Schemes on Coupled and Uncoupled Climate Simulations with the Community Earth System Model

    Science.gov (United States)

    Christensen, H. M.; Berner, J.; Coleman, D.; Palmer, T.

    2015-12-01

    Stochastic parameterizations have been used for more than a decade in atmospheric models to represent the variability of unresolved sub-grid processes. They have a beneficial effect on the spread and mean state of medium- and extended-range forecasts (Buizza et al. 1999, Palmer et al. 2009). There is also increasing evidence that stochastic parameterization of unresolved processes could be beneficial for the climate of an atmospheric model through noise enhanced variability, noise-induced drift (Berner et al. 2008), and by enabling the climate simulator to explore other flow regimes (Christensen et al. 2015; Dawson and Palmer 2015). We present results showing the impact of including the Stochastically Perturbed Parameterization Tendencies scheme (SPPT) in coupled runs of the National Center for Atmospheric Research (NCAR) Community Atmosphere Model, version 4 (CAM4) with historical forcing. The SPPT scheme accounts for uncertainty in the CAM physical parameterization schemes, including the convection scheme, by perturbing the parametrised temperature, moisture and wind tendencies with a multiplicative noise term. SPPT results in a large improvement in the variability of the CAM4 modeled climate. In particular, SPPT results in a significant improvement to the representation of the El Nino-Southern Oscillation in CAM4, improving the power spectrum, as well as both the inter- and intra-annual variability of tropical pacific sea surface temperatures. References: Berner, J., Doblas-Reyes, F. J., Palmer, T. N., Shutts, G. J., & Weisheimer, A., 2008. Phil. Trans. R. Soc A, 366, 2559-2577 Buizza, R., Miller, M. and Palmer, T. N., 1999. Q.J.R. Meteorol. Soc., 125, 2887-2908. Christensen, H. M., I. M. Moroz & T. N. Palmer, 2015. Clim. Dynam., doi: 10.1007/s00382-014-2239-9 Dawson, A. and T. N. Palmer, 2015. Clim. Dynam., doi: 10.1007/s00382-014-2238-x Palmer, T.N., R. Buizza, F. Doblas-Reyes, et al., 2009, ECMWF technical memorandum 598.

  20. Relativistic K-LL Auger spectra in the intermediate-coupling scheme with configuration interaction

    Science.gov (United States)

    Chen, M. H.; Crasemann, B.; Mark, H.

    1980-01-01

    Theoretical K-LL Auger spectra from relativistic Dirac-Hartree-Slater calculations in intermediate coupling with configuration interaction (ICWCI) are considered. Calculated transition rates for 25 elements with Z between 18 and 96, inclusive, are listed and compare well with experimental data. Relativistic effects are found to be important above Z equal to about 35, and ICWCI is necessary to describe the spectra for Z less than about 60.

  1. Biases and statistical errors in Monte Carlo burnup calculations: an unbiased stochastic scheme to solve Boltzmann/Bateman coupled equations

    International Nuclear Information System (INIS)

    External linking scripts between Monte Carlo transport codes and burnup codes, and complete integration of burnup capability into Monte Carlo transport codes, have been or are currently being developed. Monte Carlo linked burnup methodologies may serve as an excellent benchmark for new deterministic burnup codes used for advanced systems; however, there are some instances where deterministic methodologies break down (i.e., heavily angularly biased systems containing exotic materials without proper group structure) and Monte Carlo burn up may serve as an actual design tool. Therefore, researchers are also developing these capabilities in order to examine complex, three-dimensional exotic material systems that do not contain benchmark data. Providing a reference scheme implies being able to associate statistical errors to any neutronic value of interest like k(eff), reaction rates, fluxes, etc. Usually in Monte Carlo, standard deviations are associated with a particular value by performing different independent and identical simulations (also referred to as 'cycles', 'batches', or 'replicas'), but this is only valid if the calculation itself is not biased. And, as will be shown in this paper, there is a bias in the methodology that consists of coupling transport and depletion codes because Bateman equations are not linear functions of the fluxes or of the reaction rates (those quantities being always measured with an uncertainty). Therefore, we have to quantify and correct this bias. This will be achieved by deriving an unbiased minimum variance estimator of a matrix exponential function of a normal mean. The result is then used to propose a reference scheme to solve Boltzmann/Bateman coupled equations, thanks to Monte Carlo transport codes. Numerical tests will be performed with an ad hoc Monte Carlo code on a very simple depletion case and will be compared to the theoretical results obtained with the reference scheme. Finally, the statistical error propagation

  2. MESMO 2: a mechanistic marine silica cycle and coupling to a simple terrestrial scheme

    Directory of Open Access Journals (Sweden)

    K. Matsumoto

    2012-09-01

    Full Text Available Here we describe the second version of Minnesota Earth System Model for Ocean biogeochemistry (MESMO 2, an earth system model of intermediate complexity, which consists of a dynamical ocean, dynamic-thermodynamic sea ice, and energy moisture balanced atmosphere. The new version has more realistic land ice masks and is driven by seasonal winds. A major aim in version 2 is representing the marine silica cycle mechanistically in order to investigate climate-carbon feedbacks involving diatoms, a critically important class of phytoplankton in terms of carbon export production. This is achieved in part by including iron, on which phytoplankton uptake of silicic acid depends. Also, MESMO 2 is coupled to an existing terrestrial model, which allows for the exchange of carbon, water, and energy between land and the atmosphere. The coupled model, called MESMO 2E, is appropriate for more complete earth system simulations. The new version was calibrated with the goal of preserving reasonable interior ocean ventilation and various biological production rates in the ocean and land, while simulating key features of the marine silica cycle.

  3. Communication: Spin densities within a unitary group based spin-adapted open-shell coupled-cluster theory: Analytic evaluation of isotropic hyperfine-coupling constants for the combinatoric open-shell coupled-cluster scheme

    Energy Technology Data Exchange (ETDEWEB)

    Datta, Dipayan, E-mail: datta.dipayan@gmail.com; Gauss, Jürgen, E-mail: gauss@uni-mainz.de [Institut für Physikalische Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55128 Mainz (Germany)

    2015-07-07

    We report analytical calculations of isotropic hyperfine-coupling constants in radicals using a spin-adapted open-shell coupled-cluster theory, namely, the unitary group based combinatoric open-shell coupled-cluster (COSCC) approach within the singles and doubles approximation. A scheme for the evaluation of the one-particle spin-density matrix required in these calculations is outlined within the spin-free formulation of the COSCC approach. In this scheme, the one-particle spin-density matrix for an open-shell state with spin S and M{sub S} = + S is expressed in terms of the one- and two-particle spin-free (charge) density matrices obtained from the Lagrangian formulation that is used for calculating the analytic first derivatives of the energy. Benchmark calculations are presented for NO, NCO, CH{sub 2}CN, and two conjugated π-radicals, viz., allyl and 1-pyrrolyl in order to demonstrate the performance of the proposed scheme.

  4. A non-oscillatory balanced scheme for an idealized tropical climate model. Part II. Nonlinear coupling and moisture effects

    Energy Technology Data Exchange (ETDEWEB)

    Khouider, Boualem [University of Victoria, Mathematics and Statistics, Victoria, B.C. (Canada); Majda, Andrew J. [New York University, Department of Mathematics and Center for Atmosphere/Ocean Sciences, NY (United States); Courant Institute, New York, NY (United States)

    2005-10-01

    We use the non-oscillatory balanced numerical scheme developed in Part I to track the dynamics of a dry highly nonlinear barotropic/baroclinic coupled solitary wave, as introduced by Biello and Majda (2004), and of the moisture fronts of Frierson et al. (2004) in the presence of dry gravity waves, a barotropic trade wind, and the beta effect. It is demonstrated that, for the barotropic/baroclinic solitary wave, except for a little numerical dissipation, the scheme utilized here preserves total energy despite the strong interactions and exchange of energy between the baroclinic and barotropic components of the flow. After a short transient period where the numerical solution stays close to the asymptotic predictions, the flow develops small scale eddies and ultimately becomes highly turbulent. It is found here that the interaction of a dry gravity wave with a moisture front can either result in a reflection of a fast moistening front or the pure extinction of the precipitation. The barotropic trade wind stretches the precipitation patches and increases the lifetime of the moisture fronts which decay naturally by the effects of dissipation through precipitation while the Coriolis effect makes the moving precipitation patches disappear and appear at other times and places. (orig.)

  5. A scheme for two-photon lasing with two coupled flux qubits in circuit quantum electrodynamics

    Science.gov (United States)

    Huang, Wen; Zou, Xu-Bo; Guo, Guang-Can

    2015-06-01

    We theoretically study the system of a superconducting transmission line resonator coupled to two interacting superconducting flux qubits. It is shown that under certain conditions the resonator mode can be tuned to two-photon resonance between the ground state and the highest excited state while the middle excited states are far-off resonance. Furthermore, we study the steady-state properties of the flux qubits and resonator, such as the photon statistics, the spectrum and squeezing of the resonator, and demonstrate that two-photon laser can be implemented with current experimental technology. Project supported by the National Fundamental Research Program of China (Grant No. 2011cba00200), the National Natural Science Foundation of China (Grant No. 11274295), and the Doctor Foundation of Education Ministry of China (Grant No. 20113402110059).

  6. Ergodic Secret Alignment

    CERN Document Server

    Bassily, Raef

    2010-01-01

    In this paper, we introduce two new achievable schemes for the fading multiple access wiretap channel (MAC-WT). In the model that we consider, we assume that perfect knowledge of the state of all channels is available at all the nodes in a causal fashion. Our schemes use this knowledge together with the time varying nature of the channel model to align the interference from different users at the eavesdropper perfectly in a one-dimensional space while creating a higher dimensionality space for the interfering signals at the legitimate receiver hence allowing for better chance of recovery. While we achieve this alignment through signal scaling at the transmitters in our first scheme (scaling based alignment (SBA)), we let nature provide this alignment through the ergodicity of the channel coefficients in the second scheme (ergodic secret alignment (ESA)). For each scheme, we obtain the resulting achievable secrecy rate region. We show that the secrecy rates achieved by both schemes scale with SNR as 1/2log(SNR...

  7. Real Interference Alignment

    CERN Document Server

    Motahari, Abolfazl Seyed; Maddah-Ali, Mohammad-Ali; Khandani, Amir Keyvan

    2010-01-01

    In this paper, we show that the total Degrees-Of-Freedoms (DOF) of the $K$-user Gaussian Interference Channel (GIC) can be achieved by incorporating a new alignment technique known as \\emph{real interference alignment}. This technique compared to its ancestor \\emph{vector interference alignment} performs on a single real line and exploits the properties of real numbers to provide optimal signaling. The real interference alignment relies on a new coding scheme in which several data streams having fractional multiplexing gains are sent by transmitters and interfering streams are aligned at receivers. The coding scheme is backed up by a recent result in the field of Diophantine approximation, which states that the convergence part of the Khintchine-Groshev theorem holds for points on non-degenerate manifolds.

  8. A Low-order Coupled Chemistry Meteorology Model for Testing Online and Offline Advanced Data Assimilation Schemes

    Science.gov (United States)

    Bocquet, M.; Haussaire, J. M.

    2015-12-01

    Bocquet and Sakov have recently introduced a low-order model based on the coupling of thechaotic Lorenz-95 model which simulates winds along a mid-latitude circle, with thetransport of a tracer species advected by this wind field. It has been used to testadvanced data assimilation methods with an online model that couples meteorology andtracer transport. In the present study, the tracer subsystem of the model is replacedwith a reduced photochemistry module meant to emulate reactive air pollution. Thiscoupled chemistry meteorology model, the L95-GRS model, mimics continental andtranscontinental transport and photochemistry of ozone, volatile organic compounds andnitrogen dioxides.The L95-GRS is specially useful in testing advanced data assimilation schemes, such as theiterative ensemble Kalman smoother (IEnKS) that combines the best of ensemble andvariational methods. The model provides useful insights prior to any implementation ofthe data assimilation method on larger models. For instance, online and offline dataassimilation strategies based on the ensemble Kalman filter or the IEnKS can easily beevaluated with it. It allows to document the impact of species concentration observationson the wind estimation. The model also illustrates a long standing issue in atmosphericchemistry forecasting: the impact of the wind chaotic dynamics and of the chemical speciesnon-chaotic but highly nonlinear dynamics on the selected data assimilation approach.

  9. A unifying mode-coupling theory for transport properties of electrolyte solutions. I. General scheme and limiting laws

    Science.gov (United States)

    Contreras Aburto, Claudio; Nägele, Gerhard

    2013-10-01

    We develop a general method for calculating conduction-diffusion transport properties of strong electrolyte mixtures, including specific conductivities, steady-state electrophoretic mobilities, and self-diffusion coefficients. The ions are described as charged Brownian spheres, and the solvent-mediated hydrodynamic interactions (HIs) are also accounted for in the non-instantaneous ion atmosphere relaxation effect. A linear response expression relating long-time partial mobilities to associated dynamic structure factors is employed in our derivation of a general mode coupling theory (MCT) method for the conduction-diffusion properties. A simplified solution scheme for the MCT method is discussed. Analytic results are obtained for transport coefficients of pointlike ions which, for very low ion concentrations, reduce to the Deby-Falkenhagen-Onsager-Fuoss limiting law expressions. As an application, an unusual non-monotonic concentration dependence of the polyion electrophoretic mobility in a mixture of two binary electrolytes is discussed. In addition, leading-order extensions of the limiting law results are derived with HIs included. The present method complements a related MCT method by the authors for the electrolyte viscosity and shear relaxation function [C. Contreras-Aburto and G. Nägele, J. Phys.: Condens. Matter 24, 464108 (2012)], so that a unifying scheme for conduction-diffusion and viscoelastic properties is obtained. We present here the general framework of the method, illustrating its versatility for conditions where fully analytic results are obtainable. Numerical results for conduction-diffusion properties and the viscosity of concentrated electrolytes are presented in Paper II [C. Contreras Aburto and G. Nägele, J. Chem. Phys. 139, 134110 (2013)].

  10. Investigating marine stratocumulus with a fully coupled cloud-aerosol scheme in a WRF/Chem Large Eddy Simulation

    Science.gov (United States)

    Kazil, J.; Wang, H.; Feingold, G.

    2009-12-01

    Drizzle in stratocumulus clouds is triggered by low concentrations of cloud condensation nuclei (CCN), and concurrently acts as a sink of CCN. The progression of this cloud-aerosol feedback may result in a transition in marine boundary layer dynamics and cloud structure; Closed cell circulation, characterized by a solid stratocumulus layer, may transition into an open cellular mode featuring low cloud fraction. Aerosol sources may balance the loss of CCN from drizzle, and delay or prevent the emergence of open cell circulation. Such sources include particle emissions from the sea surface, entrainment of aerosol from the free troposphere into the cloud deck, advection from land sources, and aerosol nucleation. In order to investigate the role of aerosol sources and processes in the transition between these two states, we have coupled in detail aerosol processes, cloud microphysics, and gas and aqueous chemistry in the WRF/Chem model. We operate WRF/Chem in Large Eddy Simulation mode. Aerosol nucleation is described with a sulfuric acid/water scheme based on laboratory measurements of the nucleation process. Here we present first results on the role of aerosol nucleation for cloud properties and drizzle formation in pristine conditions of the South-East Pacific region, and in polluted conditions.

  11. Fully passive-alignment pluggable compact parallel optical interconnection modules based on a direct-butt-coupling structure for fiber-optic applications

    Science.gov (United States)

    Lim, Kwon-Seob; Park, Hyoung-Jun; Kang, Hyun Seo; Kim, Young Sun; Jang, Jae-Hyung

    2016-02-01

    A low-cost packaging method utilizing a fully passive optical alignment and surface-mounting method is demonstrated for pluggable compact and slim multichannel optical interconnection modules using a VCSEL/PIN-PD chip array. The modules are based on a nonplanar bent right-angle electrical signal path on a silicon platform and direct-butt-optical coupling without a bulky and expensive microlens array. The measured optical direct-butt-coupling efficiencies of each channel without any bulky optics are as high as 33% and 95% for the transmitter and receiver, respectively. Excellent lateral optical alignment tolerance of larger than 60 μm for both the transmitter and receiver module significantly reduces the manufacturing and material costs as well as the packaging time. The clear eye diagrams, extinction ratios higher than 8 dB at 10.3 Gbps for the transmitter module, and receiver sensitivity of better than -13.1 dBm at 10.3 Gbps and a bit error rate of 10-12 for all channels are demonstrated. Considering that the optical output power of the transmitter is greater than 0 dBm, the module has a sufficient power margin of about 13 dB for 10.3 Gbps operations for all channels.

  12. Marine boundary layer cloud regimes and POC formation in an LES coupled to a bulk aerosol scheme

    Directory of Open Access Journals (Sweden)

    A. H. Berner

    2013-07-01

    Full Text Available A large-eddy simulation (LES coupled to a new bulk aerosol scheme is used to study long-lived regimes of aerosol-boundary layer cloud-precipitation interaction and the development of pockets of open cells (POCs in subtropical stratocumulus cloud layers. The aerosol scheme prognoses mass and number concentration of a single log-normal accumulation mode with surface and entrainment sources, evolving subject to processing of activated aerosol and scavenging of dry aerosol by cloud and rain. The LES with the aerosol scheme is applied to a range of steadily-forced simulations idealized from a well-observed POC case. The long-term system evolution is explored with extended two-dimensional simulations of up to 20 days, mostly with diurnally-averaged insolation. One three-dimensional two-day simulation confirms the initial development of the corresponding two-dimensional case. With weak mean subsidence, an initially aerosol-rich mixed layer deepens, the capping stratocumulus cloud slowly thickens and increasingly depletes aerosol via precipitation accretion, then the boundary layer transitions within a few hours into an open-cell regime with scattered precipitating cumuli, in which entrainment is much weaker. The inversion slowly collapses for several days until the cumulus clouds are too shallow to efficiently precipitate. Inversion cloud then reforms and radiatively drives renewed entrainment, allowing the boundary layer to deepen and become more aerosol-rich, until the stratocumulus layer thickens enough to undergo another cycle of open-cell formation. If mean subsidence is stronger, the stratocumulus never thickens enough to initiate drizzle and settles into a steady state. With lower initial aerosol concentrations, this system quickly transitions into open cells, collapses, and redevelops into a different steady state with a shallow, optically thin cloud layer. In these steady states, interstitial scavenging by cloud droplets is the main sink of

  13. Interpretation of ES, CS, and IOS approximations within a translational-internal coupling scheme. II. Application to atom-diatom kinetic cross sections

    Science.gov (United States)

    Coombe, D. A.; Snider, R. F.

    1980-02-01

    ES, CS, and IOS approximations to atom-diatom kinetic cross sections are derived. In doing so, reduced S-matrices in a translational-internal coupling scheme are stressed. This entails the insertion of recently obtained approximate reduced S-matrices in the translational-internal coupling scheme into previously derived general expressions for the kinetic cross sections. Of special interest is the structure (rotational j quantum number dependence) of the kinetic cross sections associated with the Senftleben Beenakker effects and of pure internal state relaxation phenomena. The viscomagnetic effect is used as an illustrative example. It is found in particular that there is a great similarity of structure between the energy sudden (and IOS) approximation and the previously derived distorted wave Born results.

  14. High statistics determination of the strong coupling constant in Taylor scheme and its OPE Wilson coefficient from lattice QCD with a dynamical charm

    CERN Document Server

    Blossier, B; Brinet, M; De Soto, F; Morenas, V; Pène, O; Petrov, K; Rodríguez-Quintero, J

    2014-01-01

    This paper reports on the determination of $\\alpha_S$ from lattice simulations with 2+1+1 twisted-mass dynamical flavours {\\it via} the computation of the ghost-gluon coupling renormalized in the MOM Taylor scheme. A high-statistics sample of gauge configurations, used to evaluate the coupling from ghost and gluon propagators, allows for the appropriate update of previous results, now performing an improved analysis of data with reduced statistical errors and the systematical uncertainties under a better control.

  15. Parameters for accurate genome alignment

    Directory of Open Access Journals (Sweden)

    Hamada Michiaki

    2010-02-01

    Full Text Available Abstract Background Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which score parameters to use. Surprisingly, there has been no large-scale assessment of these choices using real genomic data. Moreover, rigorous procedures to control the rate of spurious alignment have not been employed. Results We have assessed 495 combinations of score parameters for alignment of animal, plant, and fungal genomes. As our gold-standard of accuracy, we used genome alignments implied by multiple alignments of proteins and of structural RNAs. We found the HOXD scoring schemes underlying alignments in the UCSC genome database to be far from optimal, and suggest better parameters. Higher values of the X-drop parameter are not always better. E-values accurately indicate the rate of spurious alignment, but only if tandem repeats are masked in a non-standard way. Finally, we show that γ-centroid (probabilistic alignment can find highly reliable subsets of aligned bases. Conclusions These results enable more accurate genome alignment, with reliability measures for local alignments and for individual aligned bases. This study was made possible by our new software, LAST, which can align vertebrate genomes in a few hours http://last.cbrc.jp/.

  16. An automated system for the analysis of G protein-coupled receptor transmembrane binding pockets: alignment, receptor-based pharmacophores, and their application.

    Science.gov (United States)

    Kratochwil, Nicole A; Malherbe, Pari; Lindemann, Lothar; Ebeling, Martin; Hoener, Marius C; Mühlemann, Andreas; Porter, Richard H P; Stahl, Martin; Gerber, Paul R

    2005-01-01

    G protein-coupled receptors (GPCRs) share a common architecture consisting of seven transmembrane (TM) domains. Various lines of evidence suggest that this fold provides a generic binding pocket within the TM region for hosting agonists, antagonists, and allosteric modulators. Here, a comprehensive and automated method allowing fast analysis and comparison of these putative binding pockets across the entire GPCR family is presented. The method relies on a robust alignment algorithm based on conservation indices, focusing on pharmacophore-like relationships between amino acids. Analysis of conservation patterns across the GPCR family and alignment to the rhodopsin X-ray structure allows the extraction of the amino acids lining the TM binding pocket in a so-called ligand binding pocket vector (LPV). In a second step, LPVs are translated to simple 3D receptor pharmacophore models, where each amino acid is represented by a single spherical pharmacophore feature and all atomic detail is omitted. Applications of the method include the assessment of selectivity issues, support of mutagenesis studies, and the derivation of rules for focused screening to identify chemical starting points in early drug discovery projects. Because of the coarseness of this 3D receptor pharmacophore model, however, meaningful scoring and ranking procedures of large sets of molecules are not justified. The LPV analysis of the trace amine-associated receptor family and its experimental validation is discussed as an example. The value of the 3D receptor model is demonstrated for a class C GPCR family, the metabotropic glutamate receptors.

  17. Coupling Nitrogen Transport and Transformation Model with Land Surface Scheme SABAE-HW and its Application on the Canadian Prairies

    Science.gov (United States)

    Hejazi, A.; Woodbury, A. D.; Loukili, Y.; Akinremi, W.

    2012-12-01

    The main goal of the present research is to contribute to the understanding of nutrient transport and transformations in soil and its impact on groundwater on a large scale. This paper specifically integrates the physical, chemical and biochemical nitrogen transport processes with a spatial and temporal Land Surface Scheme (LSS). Because solute transport highly depends on soil moisture and soil temperature, a vertical soil nitrogen transport and transformations model was coupled with the SABAE-HW model. Since manure is one of the most commonly available sources of nutrients, it is assumed that the main source of organic N is from animal manure in this study. A-single-pool nitrogen transformation is designed to simulate nitrogen dynamics. Mineralization and nitrification are modeled using the first order kinetics. The performance of the integrated model (SABAE-HWS) is calibrated and verified using 3 years field data from Carberry site in central Canada, Manitoba. Two rates of hog manure (2500 and 7500 gal/acre) were investigated to study the distribution of soil ammonium and soil nitrate within the 120 cm of soil profile. The results clearly showed that there is a good agreement between observed and simulated soil ammonium and soil nitrate for the two manure application rates in the first two years of study. However, there were significant differences between observations and simulations at lower depths with 7500 gal/acre by the end of growing season of 2004. Also, a 10-year climate data was used to evaluate the effect of manure rates on nitrate leaching at the Carberry site. The results indicated that to minimize the risk of nitrate leaching, the rate of manure application, accumulated soil nitrogen from earlier applications, and the atmospheric conditions should be all taken into account at the same time. The simulations clearly showed that to have a nitrate concentration below 10 mg/kg in the leachate, the manure rate should not exceed 2500 gal/acre. The model is

  18. Critical issues for high-power FEL based on microtron recuperator/electron out-coupling scheme

    Science.gov (United States)

    Vinokurov, Nikolai A.; Zholents, Alexander A.; Fawley, William M.; Kim, Kwang J.

    1997-05-01

    The FELs based on the rf accelerator-recuperator and the electron outcoupling is promising for obtaining average output power of hundreds of kilowatts. We present basic considerations for the system stability and performance optimization for this scheme.

  19. Rod microglia: elongation, alignment, and coupling to form trains across the somatosensory cortex after experimental diffuse brain injury

    Directory of Open Access Journals (Sweden)

    Ziebell Jenna M

    2012-10-01

    to cytoarchitecture of dendrites and axons, with no alignment with astrocytes and oligodendrocytes. Iba1-positive rod microglial cells differentially express other known markers for reactive microglia including OX-6 and CD68. Conclusion Diffuse traumatic brain injury induces a distinct rod microglia morphology, unique phenotype, and novel association between cells; these observations entice further investigation for impact on neurological outcome.

  20. A low-order coupled chemistry meteorology model for testing online and offline data assimilation schemes: L95-GRS (v1.0)

    Science.gov (United States)

    Haussaire, J.-M.; Bocquet, M.

    2016-01-01

    Bocquet and Sakov (2013) introduced a low-order model based on the coupling of the chaotic Lorenz-95 (L95) model, which simulates winds along a mid-latitude circle, with the transport of a tracer species advected by this zonal wind field. This model, named L95-T, can serve as a playground for testing data assimilation schemes with an online model. Here, the tracer part of the model is extended to a reduced photochemistry module. This coupled chemistry meteorology model (CCMM), the L95-GRS (generic reaction set) model, mimics continental and transcontinental transport and the photochemistry of ozone, volatile organic compounds and nitrogen oxides. Its numerical implementation is described. The model is shown to reproduce the major physical and chemical processes being considered. L95-T and L95-GRS are specifically designed and useful for testing advanced data assimilation schemes, such as the iterative ensemble Kalman smoother (IEnKS), which combines the best of ensemble and variational methods. These models provide useful insights prior to the implementation of data assimilation methods into larger models. We illustrate their use with data assimilation schemes on preliminary yet instructive numerical experiments. In particular, online and offline data assimilation strategies can be conveniently tested and discussed with this low-order CCMM. The impact of observed chemical species concentrations on the wind field estimate can be quantitatively assessed. The impacts of the wind chaotic dynamics and of the chemical species non-chaotic but highly nonlinear dynamics on the data assimilation strategies are illustrated.

  1. Position list word aligned hybrid

    DEFF Research Database (Denmark)

    Deliege, Francois; Pedersen, Torben Bach

    2010-01-01

    of storage space. This paper presents the Position List Word Aligned Hybrid (PLWAH) compression scheme that improves significantly over WAH compression by better utilizing the available bits and new CPU instructions. For typical bit distributions, PLWAH compressed bitmaps are often half the size of WAH......Compressed bitmap indexes are increasingly used for efficiently querying very large and complex databases. The Word Aligned Hybrid (WAH) bitmap compression scheme is commonly recognized as the most efficient compression scheme in terms of CPU efficiency. However, WAH compressed bitmaps use a lot...

  2. Production of a two-years meteorological dataset with a coupling framework between a Limited Area Atmospheric Model and a sequential Land Surface Temperature Assimilation scheme

    Science.gov (United States)

    Campo, Lorenzo; Castelli, Fabio; Entekhabi, Dara; Caparrini, Francesca

    2010-05-01

    The representation of the surface phenomena like the turbulent exchange of heat between the land and the atmosphere is a traditional weakness in the atmospheric models. These phenomena have been often neglected or poorly represented in the past, especially in the Global Circulation Models. The modern generation models (in particular Limited Area Models) present, on the opposite, much more accurate modelizations that require very complex parametrization, difficult or impossible to retrieve with sufficient accuracy. In this work remote sensed maps of Land Surface Temperature retrieved by MSG-SEVIRI sensor have been used in a 1D variational assimilation scheme in order to produce optimal estimates of the surface energy budget in terms of sensible and latent heat fluxes patterns. This assimilation scheme, ACHAB, has then been coupled with the limited area atmospheric model RAMS replacing the surface module of the latter, LEAF-3, with the assimilation run products. A two years long meteorological dataset (March 1st, 2005 - December 31st, 2006) was produced on the Italian territory using this coupling framework. A control run was used in order to evaluate performances of the atmospheric model also in absence of the LST assimilation. Evaluations of the results of the coupling framework by comparison with both observations of the ground sensors network and the atmospheric soundings available in the study period are presented.

  3. Coupling a local adaptive grid refinement technique with an interface sharpening scheme for the simulation of two-phase flow and free-surface flows using VOF methodology

    Science.gov (United States)

    Malgarinos, Ilias; Nikolopoulos, Nikolaos; Gavaises, Manolis

    2015-11-01

    This study presents the implementation of an interface sharpening scheme on the basis of the Volume of Fluid (VOF) method, as well as its application in a number of theoretical and real cases usually modelled in literature. More specifically, the solution of an additional sharpening equation along with the standard VOF model equations is proposed, offering the advantage of "restraining" interface numerical diffusion, while also keeping a quite smooth induced velocity field around the interface. This sharpening equation is solved right after volume fraction advection; however a novel method for its coupling with the momentum equation has been applied in order to save computational time. The advantages of the proposed sharpening scheme lie on the facts that a) it is mass conservative thus its application does not have a negative impact on one of the most important benefits of VOF method and b) it can be used in coarser grids as now the suppression of the numerical diffusion is grid independent. The coupling of the solved equation with an adaptive local grid refinement technique is used for further decrease of computational time, while keeping high levels of accuracy at the area of maximum interest (interface). The numerical algorithm is initially tested against two theoretical benchmark cases for interface tracking methodologies followed by its validation for the case of a free-falling water droplet accelerated by gravity, as well as the normal liquid droplet impingement onto a flat substrate. Results indicate that the coupling of the interface sharpening equation with the HRIC discretization scheme used for volume fraction flux term, not only decreases the interface numerical diffusion, but also allows the induced velocity field to be less perturbed owed to spurious velocities across the liquid-gas interface. With the use of the proposed algorithmic flow path, coarser grids can replace finer ones at the slight expense of accuracy.

  4. Biosphere-Atmosphere Transfer Scheme (BATS) version le as coupled to the NCAR community climate model. Technical note. [NCAR (National Center for Atmospheric Research)

    Energy Technology Data Exchange (ETDEWEB)

    Dickinson, R.E.; Henderson-Sellers, A.; Kennedy, P.J.

    1993-08-01

    A comprehensive model of land-surface processes has been under development suitable for use with various National Center for Atmospheric Research (NCAR) General Circulation Models (GCMs). Special emphasis has been given to describing properly the role of vegetation in modifying the surface moisture and energy budgets. The result of these efforts has been incorporated into a boundary package, referred to as the Biosphere-Atmosphere Transfer Scheme (BATS). The current frozen version, BATS1e is a piece of software about four thousand lines of code that runs as an offline version or coupled to the Community Climate Model (CCM).

  5. Effect of coupling on scheme of hysteresis jumps in current-voltage characteristics of intrinsic Josephson junctions in high- superconductors

    OpenAIRE

    Shukrinov, Yu M.; Mahfouzi, F.

    2005-01-01

    We report the numerical calculations of the current-voltage characteristics of intrinsic Josephson junctions in high- superconductors. The charging effect at superconducting layers is taken into account. A set of equations is used to study the non-linear dynamics of the system. In framework of capacitively coupled Josephson junctions model we obtain the total number of branches using fixed initial conditions for phases and their derivatives. The influence of the coupling constant \\alpha on th...

  6. Dissipative effects on a generation scheme of a W state in an array of coupled Josephson junctions

    International Nuclear Information System (INIS)

    The dynamics of an open quantum system, consisting of three superconducting qubits interacting with independent reservoirs, is investigated to elucidate the effects of the environment on a unitary generation scheme of W states (Migliore R et al 2006 Phys. Rev. B 74 104503). To this end a microscopic master equation is constructed and its exact resolution predicts the generation of a Werner-like state instead of the W state. A comparison between our model and a more intuitive phenomenological model is also considered, in order to find the limits of the latter approach in the case of structured reservoirs.

  7. Scheme for generating the singlet state of three atoms trapped in distant cavities coupled by optical fibers

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Dong-Yang [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Wen, Jing-Ji [College of Foundation Science, Harbin University of Commerce, Harbin, Heilongjiang 150028 (China); Bai, Cheng-Hua; Hu, Shi; Cui, Wen-Xue [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Wang, Hong-Fu, E-mail: hfwang@ybu.edu.cn [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Zhu, Ai-Dong [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Zhang, Shou, E-mail: szhang@ybu.edu.cn [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China)

    2015-09-15

    An effective scheme is proposed to generate the singlet state with three four-level atoms trapped in three distant cavities connected with each other by three optical fibers, respectively. After a series of appropriate atom–cavity interactions, which can be arbitrarily controlled via the selective pairing of Raman transitions and corresponding optical switches, a three-atom singlet state can be successfully generated. The influence of atomic spontaneous decay, photon leakage of cavities and optical fibers on the fidelity of the state is numerically simulated showing that the three-atom singlet state can be generated with high fidelity by choosing the experimental parameters appropriately.

  8. WEB-DHM: A distributed biosphere hydrological model developed by coupling a simple biosphere scheme with a hillslope hydrological model

    Science.gov (United States)

    The coupling of land surface models and hydrological models potentially improves the land surface representation, benefiting both the streamflow prediction capabilities as well as providing improved estimates of water and energy fluxes into the atmosphere. In this study, the simple biosphere model 2...

  9. Beyond Alignment

    DEFF Research Database (Denmark)

    Beyond Alignment: Applying Systems Thinking to Architecting Enterprises is a comprehensive reader about how enterprises can apply systems thinking in their enterprise architecture practice, for business transformation and for strategic execution. The book's contributors find that systems thinking...

  10. Investigation of radiation effects in Hiroshima and Nagasaki using a general Monte Carlo-discrete ordinates coupling scheme

    International Nuclear Information System (INIS)

    A general adjoint Monte Carlo-forward discrete ordinates radiation transport calculational scheme has been created to study the effects of the radiation environment in Hiroshima and Nagasaki due to the bombing of these two cities. Various such studies for comparison with physical data have progressed since the end of World War II with advancements in computing machinery and computational methods. These efforts have intensified in the last several years with the U.S.-Japan joint reassessment of nuclear weapons dosimetry in Hiroshima and Nagasaki. Three principal areas of investigation are: (1) to determine by experiment and calculation the neutron and gamma-ray energy and angular spectra and total yield of the two weapons; (2) using these weapons descriptions as source terms, to compute radiation effects at several locations in the two cities for comparison with experimental data collected at various times after the bombings and thus validate the source terms; and (3) to compute radiation fields at the known locations of fatalities and surviving individuals at the time of the bombings and thus establish an absolute cause-and-effect relationship between the radiation received and the resulting injuries to these individuals and any of their descendants as indicated by their medical records. It is in connection with the second and third items, the determination of the radiation effects and the dose received by individuals, that the current study is concerned

  11. A fully coupled diffusion-reaction scheme for moisture sorption-desorption in an anhydride-cured epoxy resin

    KAUST Repository

    El Yagoubi, Jalal

    2012-11-01

    Thermoset materials frequently display non-classical moisture sorption behaviors. In this paper, we investigated this issue from an experimental point of view as well as in terms of modeling the water transport. We used the gravimetric technique to monitor water uptake by epoxy samples, with several thicknesses exposed to different levels of humidity during absorption and desorption tests. Our results revealed that the polymer displays a two-stage behavior with a residual amount of water that is desorbed progressively. We proposed a phenomenological reaction-diffusion scheme to describe this behavior. The model describes water transport as a competition between diffusion and the reaction, during which the local diffusivity and solubility depend on the local advancement of the reaction. We then implemented our model using COMSOL Multiphysics and identified it using a MATLAB-COMSOL optimization tool and the experimental data. We discussed the relation between the hydrophilicity of the product of the reaction and the diffusion behavior. We examined the reaction-induced modification of the water concentration field. It is worth noting that part of the phenomenology can be explained by the presence of hydrolyzable groups. © 2012 Elsevier Ltd. All rights reserved.

  12. A TVD SCHEME FOR INCOMPRESSIBLE FLOW COUPLED WITH DIFFERENT TURBULENCE MODLES ON A GROUND- MOUNTED SQUARE-RIB FLOW

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A finite-difference Total Variation Diminishing (TVD) numerical simulation model for coupling the Reynolds Averaged Navier-Stokes (RANS) equations, pressure-relative continuity equation and various k-ε turbulence models was developed to solve the incompressible flow based on the pseudo-compressibility method. The hyperbolicity of all these equations was studied and the discretization of the fully coupling equations with all the primal variables and source terms were made in this article. Numerical simulation for modeling the flow around a ground-mounted square rib was implemented and validated by comparing with the published wind tunnel experimental data. It is shown that such a numerical simulation method with a proper turbulence model has a very good accuracy to simulate the flow around a surface-mounted rib. It is concluded that the Renormalization Group (RNG) and Chen-Kim k-ε turbulence models have much better ability to predict the characteristics of the vortex structure and flow separation than the standard k-ε model.

  13. Towards optimal alignment of protein structure distance matrices

    NARCIS (Netherlands)

    Wohlers, I.; Domingues, F.S.; Klau, G.W.

    2010-01-01

    MOTIVATION: Structural alignments of proteins are important for identification of structural similarities, homology detection and functional annotation. The structural alignment problem is well studied and computationally difficult. Many different scoring schemes for structural similarity as well as

  14. Magnetically aligned supramolecular hydrogels.

    Science.gov (United States)

    Wallace, Matthew; Cardoso, Andre Zamith; Frith, William J; Iggo, Jonathan A; Adams, Dave J

    2014-12-01

    The magnetic-field-induced alignment of the fibrillar structures present in an aqueous solution of a dipeptide gelator, and the subsequent retention of this alignment upon transformation to a hydrogel upon the addition of CaCl2 or upon a reduction in solution pH is reported. Utilising the switchable nature of the magnetic field coupled with the slow diffusion of CaCl2 , it is possible to precisely control the extent of anisotropy across a hydrogel, something that is generally very difficult to do using alternative methods. The approach is readily extended to other compounds that form viscous solutions at high pH. It is expected that this work will greatly expand the utility of such low-molecular-weight gelators (LMWG) in areas where alignment is key. PMID:25345918

  15. Vertically aligned nanostructure scanning probe microscope tips

    Science.gov (United States)

    Guillorn, Michael A.; Ilic, Bojan; Melechko, Anatoli V.; Merkulov, Vladimir I.; Lowndes, Douglas H.; Simpson, Michael L.

    2006-12-19

    Methods and apparatus are described for cantilever structures that include a vertically aligned nanostructure, especially vertically aligned carbon nanofiber scanning probe microscope tips. An apparatus includes a cantilever structure including a substrate including a cantilever body, that optionally includes a doped layer, and a vertically aligned nanostructure coupled to the cantilever body.

  16. Aligning molecules with intense nonresonant laser fields

    DEFF Research Database (Denmark)

    Larsen, J.J.; Safvan, C.P.; Sakai, H.;

    1999-01-01

    Molecules in a seeded supersonic beam are aligned by the interaction between an intense nonresonant linearly polarized laser field and the molecular polarizability. We demonstrate the general applicability of the scheme by aligning I2, ICl, CS2, CH3I, and C6H5I molecules. The alignment is probed...... by mass selective two dimensional imaging of the photofragment ions produced by femtosecond laser pulses. Calculations on the degree of alignment of I2 are in good agreement with the experiments. We discuss some future applications of laser aligned molecules....

  17. Sensitivity of the mean and variability of Indian summer monsoon to land surface schemes in RegCM4: Understanding coupled land-atmosphere feedbacks

    Science.gov (United States)

    Halder, Subhadeep; Dirmeyer, Paul A.; Saha, Subodh Kumar

    2015-09-01

    A relatively simple land surface model, the Biosphere-Atmosphere Transfer Scheme (BATS) and the more complex Community Land Model (CLM3.5) coupled to RegCM4 are used to investigate land-atmosphere feedback processes during the Indian summer monsoon. Model simulations for 27 years show that the mean and interannual variability of rainfall and surface air temperature are affected significantly due to differences in the formulation of evapotranspiration and hydrological processes between BATS and CLM3.5, prescribed land use, land cover data and changes in net radiation. RegCM4 with CLM3.5 (RCLM) shows a reduction in surface moisture flux and precipitation but an increase in surface air temperature over most parts of India as compared to RegCM4 with BATS (RBAT). In terms of the mean and interannual variability of rainfall over central India, RBAT performs better than RCLM. Evapotranspiration over central India is found to be less (more) sensitive to soil wetness variations in RCLM (RBAT) compared to the multimodel estimate from the Global Soil Wetness Project, that is mainly attributed to the differences in ground evaporation and transpiration. Changes in evaporation efficiency between the models also lead to a reduction in the land-atmosphere coupling strength for precipitation in RCLM. Furthermore, such changes decrease the convective instability over central and eastern India in RCLM leading to weakened convection, reduced large-scale moisture convergence and precipitation over land. Observations of soil moisture, surface fluxes, and radiation are needed for better understanding and improvement of coupled land-atmosphere feedbacks in models during the Indian summer monsoon.

  18. Alignment fixture

    Science.gov (United States)

    Bell, Grover C.; Gibson, O. Theodore

    1980-01-01

    A part alignment fixture is provided which may be used for precise variable lateral and tilt alignment relative to the fixture base of various shaped parts. The fixture may be used as a part holder for machining or inspection of parts or alignment of parts during assembly and the like. The fixture includes a precisely machined diameter disc-shaped hub adapted to receive the part to be aligned. The hub is nested in a guide plate which is adapted to carry two oppositely disposed pairs of positioning wedges so that the wedges may be reciprocatively positioned by means of respective micrometer screws. The sloping faces of the wedges contact the hub at respective quadrants of the hub periphery. The lateral position of the hub relative to the guide plate is adjusted by positioning the wedges with the associated micrometer screws. The tilt of the part is adjusted relative to a base plate, to which the guide plate is pivotally connected by means of a holding plate. Two pairs of oppositely disposed wedges are mounted for reciprocative lateral positioning by means of separate micrometer screws between flanges of the guide plate and the base plate. Once the wedges are positioned to achieve the proper tilt of the part or hub on which the part is mounted relative to the base plate, the fixture may be bolted to a machining, inspection, or assembly device.

  19. On aligning trees

    CERN Document Server

    Calder, J

    1997-01-01

    The increasing availability of corpora annotated for linguistic structure prompts the question: if we have the same texts, annotated for phrase structure under two different schemes, to what extent do the annotations agree on structuring within the text? We suggest the term tree alignment to indicate the situation where two markup schemes choose to bracket off the same text elements. We propose a general method for determining agreement between two analyses. We then describe an efficient implementation, which is also modular in that the core of the implementation can be reused regardless of the format of markup used in the corpora. The output of the implementation on the Susanne and Penn treebank corpora is discussed.

  20. Integrating peatlands into the coupled Canadian Land Surface Scheme (CLASS) v3.6 and the Canadian Terrestrial Ecosystem Model (CTEM) v2.0

    Science.gov (United States)

    Wu, Yuanqiao; Verseghy, Diana L.; Melton, Joe R.

    2016-08-01

    Peatlands, which contain large carbon stocks that must be accounted for in the global carbon budget, are poorly represented in many earth system models. We integrated peatlands into the coupled Canadian Land Surface Scheme (CLASS) and the Canadian Terrestrial Ecosystem Model (CTEM), which together simulate the fluxes of water, energy, and CO2 at the land surface-atmosphere boundary in the family of Canadian Earth system models (CanESMs). New components and algorithms were added to represent the unique features of peatlands, such as their characteristic ground floor vegetation (mosses), the slow decomposition of carbon in the water-logged soils and the interaction between the water, energy, and carbon cycles. This paper presents the modifications introduced into the CLASS-CTEM modelling framework together with site-level evaluations of the model performance for simulated water, energy and carbon fluxes at eight different peatland sites. The simulated daily gross primary production (GPP) and ecosystem respiration are well correlated with observations, with values of the Pearson correlation coefficient higher than 0.8 and 0.75 respectively. The simulated mean annual net ecosystem production at the eight test sites is 87 g C m-2 yr-1, which is 22 g C m-2 yr-1 higher than the observed annual mean. The general peatland model compares well with other site-level and regional-level models for peatlands, and is able to represent bogs and fens under a range of climatic and geographical conditions.

  1. Integrating peatlands into the coupled Canadian Land Surface Scheme (CLASS) v3.6 and the Canadian Terrestrial Ecosystem Model (CTEM) v2.0

    Science.gov (United States)

    Wu, Y.; Verseghy, D. L.; Melton, J. R.

    2015-11-01

    Peatlands, which contain large carbon stocks that must be accounted for in the global carbon budget, are poorly represented in many earth system models. We integrated peatlands into the coupled Canadian Land Surface Scheme (CLASS) and the Canadian Terrestrial Ecosystem Model (CTEM), which together simulate the fluxes of water, energy and CO2 at the land surface-atmosphere boundary in the family of Canadian Earth System Models (CanESMs). New components and algorithms were added to represent the unique features of peatlands, such as their characteristic ground floor vegetation (mosses), the slow decomposition of carbon in the water-logged soils and the interaction between the water, energy and carbon cycles. This paper presents the modifications introduced into the CLASS-CTEM modelling framework together with site-level evaluations of the model performance for simulated water, energy and carbon fluxes at eight different peatland sites. The simulated daily gross primary production and ecosystem respiration are well correlated with observations, with values of the Pearson correlation coefficient higher than 0.8 and 0.75 respectively. The simulated mean annual net ecosystem production at the eight test sites is 87 g C m-2 yr-1, which is 22 g C m-2 yr-1 higher than the observed annual mean. The general peatland model compares well with other site-level and regional-level models for peatlands, and is able to represent bogs and fens under a range of climatic and geographical conditions.

  2. Harmonic Analysis of Linac Alignment

    CERN Document Server

    McCrady, Rodney C

    2005-01-01

    We have analyzed the requirements on alignment of the focusing elements (quadrupole doublets) in the Los Alamos Neutron Science Center (LANSCE) side coupled linac. The analysis is performed in terms of harmonics of the quardrupole spacing. This allows us to determine the effect of intentional deviations from a straight line, such as following the curvature of the Earth, and of unintentional deviations introduced by measurement and alignment errors. Results are compared to measured positions of the doublets.

  3. R-Coffee: a method for multiple alignment of non-coding RNA

    OpenAIRE

    Wilm, Andreas; Desmond G Higgins; Notredame, Cédric

    2008-01-01

    R-Coffee is a multiple RNA alignment package, derived from T-Coffee, designed to align RNA sequences while exploiting secondary structure information. R-Coffee uses an alignment-scoring scheme that incorporates secondary structure information within the alignment. It works particularly well as an alignment improver and can be combined with any existing sequence alignment method. In this work, we used R-Coffee to compute multiple sequence alignments combining the pairwise output of sequence al...

  4. 一种耦合短路线加载的圆极化天线方案%A circularly polarized antenna scheme coupled with short route

    Institute of Scientific and Technical Information of China (English)

    陈智达; 廖林; 彭顺全

    2016-01-01

    提出在微带贴片辐射面上加载等长耦合短路线获得小型化或者小介电常数的圆极化微带天线设计方案,设计了两款双馈的北斗B3天线验证了该方法的有效性。HFSS仿真结果表明,该天线工作于1.268 GHz,单元应用于北斗自适应阵内,底盘尺寸直径为220 mm,传统天线采用50×50,ε=10的介质板,增益为5.7 dB。本设计方案1采用35×35,ε=10的介质板,增益6.0 dB,尺寸压缩了30%;方案2采用50×50,ε=6的介质板,增益为7.1 dB。介电常数减少了40%。与传统的微带圆极化天线相比,该设计方案可以根据实际选用更高增益的天线方案以及更小尺寸的天线方案。%In this paper, circularly polarized microstrip patch antenna has been widely used in wireless communications. As loading on the coupling short of microstrip patch radiating long line to get circular polarization microstrip antenna design miniaturization or a small dielectric constant, is proposed two double-fed antenna Compass B3 is designed to verify the effectiveness. HFSS simulation results show that the antenna in 1.268GHz, unit applies adaptive array within Compass, chassis size diameter of 220mm, a traditional antenna is 50 ×50,ε= dielectric plate 10, a gain of 5.7 dB. The design uses a 35×35,ε= dielectric plate 10, the gain 6.0 dB, size 30% compression; Scheme 2 using the dielectric plate 50 ×50,ε= 6, the gain is 7.1 dB reduced dielectric constant 40%. Compared with the conventional circular polarization microstrip antenna, the design can be chosen according to the actual programs and higher gain antenna with smaller size antenna scheme.

  5. Advances in process overlay: alignment solutions for future technology nodes

    Science.gov (United States)

    Megens, Henry; van Haren, Richard; Musa, Sami; Doytcheva, Maya; Lalbahadoersing, Sanjay; van Kemenade, Marc; Lee, Hyun-Woo; Hinnen, Paul; van Bilsen, Frank

    2007-03-01

    Semiconductor industry has an increasing demand for improvement of the total lithographic overlay performance. To improve the level of on-product overlay control the number of alignment measurements increases. Since more mask levels will be integrated, more alignment marks need to be printed when using direct-alignment (also called layer-to-layer alignment). Accordingly, the alignment mark size needs to become smaller, to fit all marks into the scribelane. For an in-direct alignment scheme, e.g. a scheme that aligns to another layer than the layer to which overlay is being measured, the number of needed alignment marks can be reduced. Simultaneously there is a requirement to reduce the size of alignment mark sub-segmentations without compromising the alignment and overlay performance. Smaller features within alignment marks can prevent processing issues like erosion, dishing and contamination. However, when the sub-segmentation size within an alignment mark becomes comparable to the critical dimension, and thus smaller than the alignment-illuminating wavelength, polarization effects might start to occur. Polarization effects are a challenge for optical alignment systems to maintain mark detectability. Nevertheless, this paper shows how to actually utilize those effects in order to obtain enhanced alignment and overlay performance to support future technology nodes. Finally, another challenge to be met for new semiconductor product technologies is the ability to align through semi-opaque materials, like for instance new hard-mask materials. Enhancement of alignment signal strength can be reached by adapting to new alignment marks that generate a higher alignment signal. This paper provides a description of an integral alignment solution that meets with these emerging customer application requirements. Complying with these requirements will significantly enhance the flexibility in production strategies while maintaining or improving the alignment and overlay

  6. Evaluating mirror alignment systems using the optical sensing matrix

    Energy Technology Data Exchange (ETDEWEB)

    Mantovani, M [Universita di Siena, INFN Pisa (Italy); Freise, A [School of Physics and Astronomy, University of Birmingham, Edgbaston, Birmingham B15 2TT (United Kingdom)], E-mail: mantovan@ego-gw.it

    2008-07-15

    The most sensitive gravitational-wave detectors today are based on large-scale laser interferometers whose optics are suspended from pendulums to decouple the instrument from seismic motion. Complex control systems are required to set and maintain the microscopic position of each mirror at a precisely defined value. Such control systems use the interferometer signals as input signals, and ideally it is designed such that the degrees of freedom (mirror positions) are well decoupled in the interferometer signals. However, this is not always feasible, in particular the mirror alignment control signals in interferometric gravitational wave detectors often show strong couplings between the different degrees of freedom. In this paper we will describe a simple and powerful method to quantify in advance the performances of an alignment control system by analyzing the optical matrix of the proposed read-out system. We will motivate the method using a Fabry-Perot cavity as an example, and we will further present results for the Virgo alignment system where this method was used to characterize and improve the alignment sensing scheme.

  7. 离心压缩机组联轴器对中精度的影响因素%Influencing Factors of Shaft Coupling Alignment Accuracy of Centrifugal Compressors

    Institute of Scientific and Technical Information of China (English)

    王志春; 韩建伟

    2013-01-01

      离心式压缩机组在安装和维修过程中自始至终存在着联轴器找正对中问题,联轴器对中精度的高低对机组运行状况、生产效率有着重大的影响。从联轴器类型及安装质量和检测仪器仪表精度、质量等9个方面,来阐述离心压缩机组联轴器找正对中精度的影响因素。%There is a problem of shaft coupling alignment accuracy in complete installation and maintenance procedure of centrifugal compressors, the problem has significant effect on operation and production efficiency of the centrifugal compressors. In this article, influencing factors of shaft coupling alignment accuracy of centrifugal compressors were analyzed from nine aspects.

  8. Instantaneous-to-daily GPP upscaling schemes based on a coupled photosynthesis-stomatal conductance model: correcting the overestimation of GPP by directly using daily average meteorological inputs.

    Science.gov (United States)

    Wang, Fumin; Gonsamo, Alemu; Chen, Jing M; Black, T Andrew; Zhou, Bin

    2014-11-01

    Daily canopy photosynthesis is usually temporally upscaled from instantaneous (i.e., seconds) photosynthesis rate. The nonlinear response of photosynthesis to meteorological variables makes the temporal scaling a significant challenge. In this study, two temporal upscaling schemes of daily photosynthesis, the integrated daily model (IDM) and the segmented daily model (SDM), are presented by considering the diurnal variations of meteorological variables based on a coupled photosynthesis-stomatal conductance model. The two models, as well as a simple average daily model (SADM) with daily average meteorological inputs, were validated using the tower-derived gross primary production (GPP) to assess their abilities in simulating daily photosynthesis. The results showed IDM closely followed the seasonal trend of the tower-derived GPP with an average RMSE of 1.63 g C m(-2) day(-1), and an average Nash-Sutcliffe model efficiency coefficient (E) of 0.87. SDM performed similarly to IDM in GPP simulation but decreased the computation time by >66%. SADM overestimated daily GPP by about 15% during the growing season compared to IDM. Both IDM and SDM greatly decreased the overestimation by SADM, and improved the simulation of daily GPP by reducing the RMSE by 34 and 30%, respectively. The results indicated that IDM and SDM are useful temporal upscaling approaches, and both are superior to SADM in daily GPP simulation because they take into account the diurnally varying responses of photosynthesis to meteorological variables. SDM is computationally more efficient, and therefore more suitable for long-term and large-scale GPP simulations.

  9. Indirect visual cryptography scheme

    Science.gov (United States)

    Yang, Xiubo; Li, Tuo; Shi, Yishi

    2015-10-01

    Visual cryptography (VC), a new cryptographic scheme for image. Here in encryption, image with message is encoded to be N sub-images and any K sub-images can decode the message in a special rules (N>=2, 2images are printed on transparency and stacked exactly, the message of original image will be decrypted by human visual system, but any K-1 of them get no information about it. This cryptographic scheme can decode concealed images without any cryptographic computations, and it has high security. But this scheme lacks of hidden because of obvious feature of sub-images. In this paper, we introduce indirect visual cryptography scheme (IVCS), which encodes sub-images to be pure phase images without visible strength based on encoding of visual cryptography. The pure phase image is final ciphertexts. Indirect visual cryptography scheme not only inherits the merits of visual cryptography, but also raises indirection, hidden and security. Meanwhile, the accuracy alignment is not required any more, which leads to the strong anti-interference capacity and robust in this scheme. System of decryption can be integrated highly and operated conveniently, and its process of decryption is dynamic and fast, which all lead to the good potentials in practices.

  10. An active alignment method for post launch co-alignment of laser beam combiner systems

    Science.gov (United States)

    Yu, A. W.; Green, J. W.; Maynard, W. L.; Minott, P. O.; Krainak, M. A.

    1992-01-01

    A laser transmitter for high bandwidth geosynchronous satellite communications is described. High optical power is achieved by combining semiconductor laser diodes. An active alignment scheme is proposed for achieving the +/- 20 microrad post launch multiple laser angular co-alignment requirement.

  11. TSGC and JSC Alignment

    Science.gov (United States)

    Sanchez, Humberto

    2013-01-01

    NASA and the SGCs are, by design, intended to work closely together and have synergistic Vision, Mission, and Goals. The TSGC affiliates and JSC have been working together, but not always in a concise, coordinated, nor strategic manner. Today we have a couple of simple ideas to present about how TSGC and JSC have started to work together in a more concise, coordinated, and strategic manner, and how JSC and non-TSG Jurisdiction members have started to collaborate: Idea I: TSGC and JSC Technical Alignment Idea II: Concept of Clusters.

  12. Comparison of GCM subgrid fluxes calculated using BATS and SiB schemes with a coupled land-atmosphere high-resolution model

    Energy Technology Data Exchange (ETDEWEB)

    Shen, Jinmei; Arritt, R.W. [Iowa State Univ., Ames, IA (United States)

    1996-12-31

    The importance of land-atmosphere interactions and biosphere in climate change studies has long been recognized, and several land-atmosphere interaction schemes have been developed. Among these, the Simple Biosphere scheme (SiB) of Sellers et al. and the Biosphere Atmosphere Transfer Scheme (BATS) of Dickinson et al. are two of the most widely known. The effects of GCM subgrid-scale inhomogeneities of surface properties in general circulation models also has received increasing attention in recent years. However, due to the complexity of land surface processes and the difficulty to prescribe the large number of parameters that determine atmospheric and soil interactions with vegetation, many previous studies and results seem to be contradictory. A GCM grid element typically represents an area of 10{sup 4}-10{sup 6} km{sup 2}. Within such an area, there exist variations of soil type, soil wetness, vegetation type, vegetation density and topography, as well as urban areas and water bodies. In this paper, we incorporate both BATS and SiB2 land surface process schemes into a nonhydrostatic, compressible version of AMBLE model (Atmospheric Model -- Boundary-Layer Emphasis), and compare the surface heat fluxes and mesoscale circulations calculated using the two schemes. 8 refs., 5 figs.

  13. Colour schemes

    DEFF Research Database (Denmark)

    van Leeuwen, Theo

    2013-01-01

    This chapter presents a framework for analysing colour schemes based on a parametric approach that includes not only hue, value and saturation, but also purity, transparency, luminosity, luminescence, lustre, modulation and differentiation.......This chapter presents a framework for analysing colour schemes based on a parametric approach that includes not only hue, value and saturation, but also purity, transparency, luminosity, luminescence, lustre, modulation and differentiation....

  14. Laser alignment of rotating equipment at PNL

    International Nuclear Information System (INIS)

    Lateral vibration in direct-drive equipment is usually caused by misalignment. Over the years, because of the need to improve on techniques and ways of working more efficiently, various types of alignment methods have evolved. In the beginning, craftsmen used a straight-edge scale across the coupling with a feeler gauge measuring the misalignment error. This is still preferred today for aligning small couplings. The industry has since decided that alignment of large direct-drive equipment needed a more accurate type of instrumentation. Rim and face is another of the first alignment methods and is used on all sizes of equipment. A disadvantage of the rim and face method is that in most cases the coupling has to be disassembled. This can cause alignment problems when the coupling is reassembled. Also, the rim and face method is not fast enough to work satisfactorily on alignment of thermally hot equipment. Another concern is that the coupling has to be manufactured accurately for correct rim and face readings. Reverse dial alignment is an improvement over the rim and face method, and depending on the operator's experience, this method can be very accurate. A good training program along with field experience will bring the operator to a proper level of proficiency for a successful program. A hand-held computer with reverse dial calculations in memory is a must for job efficiency. An advantage over the rim and face method is that the coupling is not disassembled and remains locked together. Reverse dial instrumentation measures from both shaft center lines, rather than the coupling surface so the machining of the coupling during manufacture is not a major concern

  15. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.

    Directory of Open Access Journals (Sweden)

    Hsin-Nan Lin

    Full Text Available Most sequence alignment tools can successfully align protein sequences with higher levels of sequence identity. The accuracy of corresponding structure alignment, however, decreases rapidly when considering distantly related sequences (<20% identity. In this range of identity, alignments optimized so as to maximize sequence similarity are often inaccurate from a structural point of view. Over the last two decades, most multiple protein aligners have been optimized for their capacity to reproduce structure-based alignments while using sequence information. Methods currently available differ essentially in the similarity measurement between aligned residues using substitution matrices, Fourier transform, sophisticated profile-profile functions, or consistency-based approaches, more recently.In this paper, we present a flexible similarity measure for residue pairs to improve the quality of protein sequence alignment. Our approach, called SymAlign, relies on the identification of conserved words found across a sizeable fraction of the considered dataset, and supported by evolutionary analysis. These words are then used to define a position specific substitution matrix that better reflects the biological significance of local similarity. The experiment results show that the SymAlign scoring scheme can be incorporated within T-Coffee to improve sequence alignment accuracy. We also demonstrate that SymAlign is less sensitive to the presence of structurally non-similar proteins. In the analysis of the relationship between sequence identity and structure similarity, SymAlign can better differentiate structurally similar proteins from non- similar proteins. We show that protein sequence alignments can be significantly improved using a similarity estimation based on weighted n-grams. In our analysis of the alignments thus produced, sequence conservation becomes a better indicator of structural similarity. SymAlign also provides alignment visualization that

  16. A novel approach to multiple sequence alignment using hadoop data grids.

    Science.gov (United States)

    Sudha Sadasivam, G; Baktavatchalam, G

    2010-01-01

    Multiple alignment of protein sequences helps to determine evolutionary linkage and to predict molecular structures. The factors to be considered while aligning multiple sequences are speed and accuracy of alignment. Although dynamic programming algorithms produce accurate alignments, they are computation intensive. In this paper we propose a time efficient approach to sequence alignment that also produces quality alignment. The dynamic nature of the algorithm coupled with data and computational parallelism of hadoop data grids improves the accuracy and speed of sequence alignment. The principle of block splitting in hadoop coupled with its scalability facilitates alignment of very large sequences. PMID:21224205

  17. A laser-based fiducial line for high-precision multipoint alignment system

    International Nuclear Information System (INIS)

    The next generation of linear colliders is very demanding concerning the alignment tolerances of their components. For the CLIC project, the reference axis of the components will have to be pre-aligned within 10 μm at 1 sigma with respect to a straight line in a sliding window of 200 m. A solution based on stretched wires with wire positioning sensors has been proposed in order to fulfill the alignment requirements in the Conceptual Design Report of the project. This solution has some drawbacks and laser-based alternative solutions are under study in order to validate the wire solution and possibly replace it. A new proposal is introduced in this paper, using a laser beam over 150 m as a straight alignment reference, with the objective of having an uncertainty in the determination of its straightness within 10μm. Sensors coupled to the components to be aligned would provide after calibration the horizontal and vertical offsets with respect to the laser beam, within a few micrometers, in their coordinate system. The method is based on the laser beam space stabilization effect when a beam propagates in atmospheric air inside a pipe with standing acoustic wave. The principal schemes of corresponding optoelectronics devices and temperature stabilization solutions are also proposed, making probable the extension of the laser fiducial line up to a 500 m length.

  18. A laser-based fiducial line for high-precision multipoint alignment system

    International Nuclear Information System (INIS)

    The next generation of linear colliders is very demanding concerning the alignment tolerances of their components. For the CLIC project, the reference axis of the components will have to be pre-aligned within 10 µm at 1 sigma with respect to a straight line in a sliding window of 200 m. A solution based on stretched wires with wire positioning sensors has been proposed in order to fulfill the alignment requirements in the Conceptual Design Report of the project. This solution has some drawbacks and laser-based alternative solutions are under study in order to validate the wire solution and possibly replace it. A new proposal is introduced in this paper, using a laser beam over 150 m as a straight alignment reference, with the objective of having an uncertainty in the determination of its straightness within 10 µm. Sensors, coupled to the components to be aligned, would provide after calibration the horizontal and vertical offsets with respect to the laser beam, within a few micrometers, in their coordinate system. The method is based on the laser beam space stabilization effect when a beam propagates in atmospheric air inside a pipe with standing acoustic wave. The principal schemes of corresponding optoelectronics devices and temperature stabilization solutions are also proposed, making probable the extension of the laser fiducial line up to a 500 m length.

  19. The GEM Detector projective alignment simulation system

    International Nuclear Information System (INIS)

    Precision position knowledge (< 25 microns RMS) of the GEM Detector muon system at the Superconducting Super Collider Laboratory (SSCL) is an important physics requirement necessary to minimize sagitta error in detecting and tracking high energy muons that are deflected by the magnetic field within the GEM Detector. To validate the concept of the sagitta correction function determined by projective alignment of the muon detectors (Cathode Strip Chambers or CSCs), the basis of the proposed GEM alignment scheme, a facility, called the ''Alignment Test Stand'' (ATS), is being constructed. This system simulates the environment that the CSCs and chamber alignment systems are expected to experience in the GEM Detector, albeit without the 0.8 T magnetic field and radiation environment. The ATS experimental program will allow systematic study and characterization of the projective alignment approach, as well as general mechanical engineering of muon chamber mounting concepts, positioning systems and study of the mechanical behavior of the proposed 6 layer CSCs. The ATS will consist of a stable local coordinate system in which mock-ups of muon chambers (i.e., non-working mechanical analogs, representing the three superlayers of a selected barrel and endcap alignment tower) are implemented, together with a sufficient number of alignment monitors to overdetermine the sagitta correction function, providing a self-consistency check. This paper describes the approach to be used for the alignment of the GEM muon system, the design of the ATS, and the experiments to be conducted using the ATS

  20. Inspection scheme

    International Nuclear Information System (INIS)

    As part of the Danish RERTR Program, three fuel elements with LEU U3O8-Al fuel and three fuel elements with LEU U3Si2-Al fuel were manufactured by NUKEM for irradiation testing in the DR-3 reactor at the Risoe National Laboratory in Denmark. The inspection scheme for the elements with U3O8-Al fuel is presented here as an illustration only. The inspection scheme for the elements with U3Si2-Al fuel was very similar. In this example, all document numbers, drawing numbers, and form numbers have been deleted or replaced with a generic identification. (author)

  1. 涡流问题基于C-N差分格式的有限元耦合算法%A Finite Element Coupled Algorithm Based on C-N Differential Scheme for Eddy Current Problem

    Institute of Scientific and Technical Information of China (English)

    王艳芳; 陈涛; 吴红梅; 康彤

    2011-01-01

    Fully discrete potential-based finite element methods called A- methods are used to solve a transient eddy current problem in a three-dimensional convex bounded polyhedron.Using A- methods,fully discrete coupled Crank-Nicholson numerical scheme is developed.The existence and uniqueness of solution for this scheme together with the energy-norm error estimates are provided.To verify the validity of this scheme,some computer simulations are performed for the model from TEAM Workshop Problem 7.%基于势的全离散有限元法常用于解决三维凸有界多边形区域的瞬时涡流问题。本文采用A-法的全离散Crank-Nicholson格式耦合算法,给出能量模误差估计下其解的存在唯一性,并通过TEAM Workshop问题7的数值结果,验证此算法的有效性。

  2. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez.

    Since June of 2009, the muon alignment group has focused on providing new alignment constants and on finalizing the hardware alignment reconstruction. Alignment constants for DTs and CSCs were provided for CRAFT09 data reprocessing. For DT chambers, the track-based alignment was repeated using CRAFT09 cosmic ray muons and validated using segment extrapolation and split cosmic tools. One difference with respect to the previous alignment is that only five degrees of freedom were aligned, leaving the rotation around the local x-axis to be better determined by the hardware system. Similarly, DT chambers poorly aligned by tracks (due to limited statistics) were aligned by a combination of photogrammetry and hardware-based alignment. For the CSC chambers, the hardware system provided alignment in global z and rotations about local x. Entire muon endcap rings were further corrected in the transverse plane (global x and y) by the track-based alignment. Single chamber track-based alignment suffers from poor statistic...

  3. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and J. Pivarski

    2011-01-01

    Alignment efforts in the first few months of 2011 have shifted away from providing alignment constants (now a well established procedure) and focussed on some critical remaining issues. The single most important task left was to understand the systematic differences observed between the track-based (TB) and hardware-based (HW) barrel alignments: a systematic difference in r-φ and in z, which grew as a function of z, and which amounted to ~4-5 mm differences going from one end of the barrel to the other. This difference is now understood to be caused by the tracker alignment. The systematic differences disappear when the track-based barrel alignment is performed using the new “twist-free” tracker alignment. This removes the largest remaining source of systematic uncertainty. Since the barrel alignment is based on hardware, it does not suffer from the tracker twist. However, untwisting the tracker causes endcap disks (which are aligned ...

  4. Hydrodynamic theory for nematic shells: The interplay among curvature, flow, and alignment.

    Science.gov (United States)

    Napoli, Gaetano; Vergori, Luigi

    2016-08-01

    We derive the hydrodynamic equations for nematic liquid crystals lying on curved substrates. We invoke the Lagrange-Rayleigh variational principle to adapt the Ericksen-Leslie theory to two-dimensional nematics in which a degenerate anchoring of the molecules on the substrate is enforced. The only constitutive assumptions in this scheme concern the free-energy density, given by the two-dimensional Frank potential, and the density of dissipation which is required to satisfy appropriate invariance requirements. The resulting equations of motion couple the velocity field, the director alignment, and the curvature of the shell. To illustrate our findings, we consider the effect of a simple shear flow on the alignment of a nematic lying on a cylindrical shell. PMID:27627231

  5. Fast statistical alignment.

    Directory of Open Access Journals (Sweden)

    Robert K Bradley

    2009-05-01

    Full Text Available We describe a new program for the alignment of multiple biological sequences that is both statistically motivated and fast enough for problem sizes that arise in practice. Our Fast Statistical Alignment program is based on pair hidden Markov models which approximate an insertion/deletion process on a tree and uses a sequence annealing algorithm to combine the posterior probabilities estimated from these models into a multiple alignment. FSA uses its explicit statistical model to produce multiple alignments which are accompanied by estimates of the alignment accuracy and uncertainty for every column and character of the alignment--previously available only with alignment programs which use computationally-expensive Markov Chain Monte Carlo approaches--yet can align thousands of long sequences. Moreover, FSA utilizes an unsupervised query-specific learning procedure for parameter estimation which leads to improved accuracy on benchmark reference alignments in comparison to existing programs. The centroid alignment approach taken by FSA, in combination with its learning procedure, drastically reduces the amount of false-positive alignment on biological data in comparison to that given by other methods. The FSA program and a companion visualization tool for exploring uncertainty in alignments can be used via a web interface at http://orangutan.math.berkeley.edu/fsa/, and the source code is available at http://fsa.sourceforge.net/.

  6. Fast statistical alignment.

    Science.gov (United States)

    Bradley, Robert K; Roberts, Adam; Smoot, Michael; Juvekar, Sudeep; Do, Jaeyoung; Dewey, Colin; Holmes, Ian; Pachter, Lior

    2009-05-01

    We describe a new program for the alignment of multiple biological sequences that is both statistically motivated and fast enough for problem sizes that arise in practice. Our Fast Statistical Alignment program is based on pair hidden Markov models which approximate an insertion/deletion process on a tree and uses a sequence annealing algorithm to combine the posterior probabilities estimated from these models into a multiple alignment. FSA uses its explicit statistical model to produce multiple alignments which are accompanied by estimates of the alignment accuracy and uncertainty for every column and character of the alignment--previously available only with alignment programs which use computationally-expensive Markov Chain Monte Carlo approaches--yet can align thousands of long sequences. Moreover, FSA utilizes an unsupervised query-specific learning procedure for parameter estimation which leads to improved accuracy on benchmark reference alignments in comparison to existing programs. The centroid alignment approach taken by FSA, in combination with its learning procedure, drastically reduces the amount of false-positive alignment on biological data in comparison to that given by other methods. The FSA program and a companion visualization tool for exploring uncertainty in alignments can be used via a web interface at http://orangutan.math.berkeley.edu/fsa/, and the source code is available at http://fsa.sourceforge.net/. PMID:19478997

  7. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    The main developments in muon alignment since March 2010 have been the production, approval and deployment of alignment constants for the ICHEP data reprocessing. In the barrel, a new geometry, combining information from both hardware and track-based alignment systems, has been developed for the first time. The hardware alignment provides an initial DT geometry, which is then anchored as a rigid solid, using the link alignment system, to a reference frame common to the tracker. The “GlobalPositionRecords” for both the Tracker and Muon systems are being used for the first time, and the initial tracker-muon relative positioning, based on the link alignment, yields good results within the photogrammetry uncertainties of the Tracker and alignment ring positions. For the first time, the optical and track-based alignments show good agreement between them; the optical alignment being refined by the track-based alignment. The resulting geometry is the most complete to date, aligning all 250 DTs, ...

  8. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Z. Szillasi and G. Gomez.

    2013-01-01

    When CMS is opened up, major components of the Link and Barrel Alignment systems will be removed. This operation, besides allowing for maintenance of the detector underneath, is needed for making interventions that will reinforce the alignment measurements and make the operation of the alignment system more reliable. For that purpose and also for their general maintenance and recalibration, the alignment components will be transferred to the Alignment Lab situated in the ISR area. For the track-based alignment, attention is focused on the determination of systematic uncertainties, which have become dominant, since now there is a large statistics of muon tracks. This will allow for an improved Monte Carlo misalignment scenario and updated alignment position errors, crucial for high-momentum muon analysis such as Z′ searches.

  9. Improved Transient and Steady-State Performances of Series Resonant ZCS High-Frequency Inverter-Coupled Voltage Multiplier Converter with Dual Mode PFM Control Scheme

    Science.gov (United States)

    Chu, Enhui; Gamage, Laknath; Ishitobi, Manabu; Hiraki, Eiji; Nakaoka, Mutsuo

    The A variety of switched-mode high voltage DC power supplies using voltage-fed type or current-fed type high-frequency transformer resonant inverters using MOS gate bipolar power transistors; IGBTs have been recently developed so far for a medical-use X-ray high power generator. In general, the high voltage high power X-ray generator using voltage-fed high frequency inverter with a high voltage transformer link has to meet some performances such as (i) short rising period in start transient of X-ray tube voltage (ii) no overshoot transient response in tube voltage, (iii) minimized voltage ripple in periodic steady-state under extremely wide load variations and filament heater current fluctuation conditions of the X-ray tube. This paper presents two lossless inductor snubber-assisted series resonant zero current soft switching high-frequency inverter using a diode-capacitor ladder type voltage multiplier called Cockcroft-Walton circuit, which is effectively implemented for a high DC voltage X-ray power generator. This DC high voltage generator which incorporates pulse frequency modulated series resonant inverter using IGBT power module packages is based on the operation principle of zero current soft switching commutation scheme under discontinuous resonant current and continuous resonant current transition modes. This series capacitor compensated for transformer resonant power converter with a high frequency transformer linked voltage boost multiplier can efficiently work a novel selectively-changed dual mode PFM control scheme in order to improve the start transient and steady-state response characteristics and can completely achieve stable zero current soft switching commutation tube filament current dependent for wide load parameter setting values with the aid of two lossless inductor snubbers. It is proved on the basis of simulation and experimental results in which a simple and low cost control implementation based on selectively-changed dual-mode PFM for

  10. Research on SINS Alignment Algorithm Based on FIR Filters

    Institute of Scientific and Technical Information of China (English)

    LIAN Jun-xiang; HU De-wen; WU Yuan-xin; HU Xiao-ping

    2007-01-01

    An inertial frame based alignment (IFBA) method is presented, especially for the applications on a rocking platform, e.g., marine applications. Defining the initial body frame as the inertial frame, the IFBA method achieves the alignment by virtue of a cascade of low-pass FIR filters, which attenuate the disturbing acceleration and maintain the gravity vector. The aligning time rests with the orders of the FIR filter group, and the method is suitable for large initial misali gnment case. An alignment scheme comprising a coarse phase by the IFBA method an d a fine phase by a Kalman filter is presented. Both vehicle-based and ship-based alignment experiments were carried out. The results show that the proposed scheme converges much faster than the traditional method at no cost of precision and also works well under any large initial misalignment.

  11. Vibrational configuration interaction using a tiered multimode scheme and tests of approximate treatments of vibrational angular momentum coupling: a case study for methane.

    Science.gov (United States)

    Mielke, Steven L; Chakraborty, Arindam; Truhlar, Donald G

    2013-08-15

    We present vibrational configuration interaction calculations employing the Watson Hamiltonian and a multimode expansion. Results for the lowest 36 eigenvalues of the zero total angular momentum rovibrational spectrum of methane agree with the accurate benchmarks of Wang and Carrington to within a mean unsigned deviation of 0.68, 0.033, and 0.014 cm(-1) for 4-mode, 5-mode, and 6-mode representations, respectively. We note that in the case of the 5-mode results, this is a factor of 10 better agreement than for 5-mode calculations reported earlier by Wu, Huang, Carter, and Bowman for the same set of eigenvalues, which indicates that the multimode expansion is even more rapidly convergent than previously demonstrated. Our largest calculations employ a tiered approach with matrix elements treated using a variable-order multimode expansion with orders ranging from 4-mode to 7-mode; strategies for assigning matrix elements to particular multimode tiers are discussed. Improvements of 7-mode coupling over 6-mode coupling are small (averaging 0.002 cm(-1) for the first 36 eigenvalues) suggesting that 7-mode coupling is sufficient to fully converge the results. A number of approximate treatments of the computationally expensive vibrational angular momentum terms are explored. The use of optimized vibrational quadratures allows rapid integration of the matrix elements, especially the vibrational angular momentum terms, which require significantly fewer quadrature points than are required to integrate the potential. We assign the lowest 243 states and compare our results to those of Wang and Carrington, who provided assignments for the same set of states. Excellent agreement is observed for most states, but our results are lower for some of the higher-energy states by as much as 20 cm(-1), with the largest deviations being for the states with six quanta of excitation in the F2 bends, suggesting that the earlier results were not fully converged with respect to the basis set. We

  12. Economic evaluation of conditional cash transfer scheme for postponement of first pregnancy in newly married couples in Satara district of Maharashtra (India

    Directory of Open Access Journals (Sweden)

    Asha K Pratinidhi

    2013-10-01

    Full Text Available Background: Since 2007, Satara district is implementing a voluntary conditional cash transfer scheme named “Second Honeymoon Package” (SHP for postponement of first pregnancy. This study was undertaken to evaluate it's effectiveness in preventing pregnancies, utilizing the years for learning or betterment in jobs. Cost-effectiveness analysis was undertaken from government's viewpoint and that from beneficiary's viewpoint. Objectives: To perform the economic evaluation of second honeymoon package programme from the perspective of beneficiaries and that of Government of Maharashtra during the defined time horizon. To determine the targets to be achieved so as to make the programme cost- effective. Materials and Methods: This was an evaluation study of a community based interventional programme. This study employed quasi-experimental study design. Economic evaluation was conducted from the perspective of Government of Maharashtra and that of beneficiaries'. Costs and consequences SHP were evaluated in comparison with those of routine family welfare programme. Sensitivity analysis was done using Treeage Pro® version 2009 software. Results: Cost for participation in programme was Rs. 965888/268 person years of productivity. Cost of not participating in the Second honeymoon programme but availing routine family planning services was Rs. 298902/133 person years gained. Rankings analysis showed that no strategies were clearly dominated by any other. Extended dominance report indicates no strategies were eliminated by extended dominance. Incremental cost-effectiveness ratio was Rs.4920/person year of productivity. Conclusions: The SHP is cost effective at high success and productivity rates. The success rate of postponement of first pregnancy was 51.4%. Postponement of pregnancy by 2 years provides 45% chances of productive utilization of time.

  13. Fast Statistical Alignment

    OpenAIRE

    Bradley, Robert K.; Adam Roberts; Michael Smoot; Sudeep Juvekar; Jaeyoung Do; Colin Dewey; Ian Holmes; Lior Pachter

    2009-01-01

    We describe a new program for the alignment of multiple biological sequences that is both statistically motivated and fast enough for problem sizes that arise in practice. Our Fast Statistical Alignment program is based on pair hidden Markov models which approximate an insertion/deletion process on a tree and uses a sequence annealing algorithm to combine the posterior probabilities estimated from these models into a multiple alignment. FSA uses its explicit statistical model to produce multi...

  14. 大规模场景流体模拟的耦合算法%A Couple Scheme for a Large-Scale Fluid Simulation

    Institute of Scientific and Technical Information of China (English)

    武小龙; 吴恩华; 张辉

    2011-01-01

    When simulating tsunami etc. , only around the place where the disaster occurs, full threedimension simulationis needed. At the other places, two-dimensional wave simulation can be used. To effectively use the computing resources for solving this kind of problem, a new algorithm based on the region coupling is proposed. By the algorithm, the whole computing region is divided into complex regions and simple regions, where the three-dimension Navier-Stokes simulation and two-dimension wave simulation are used respectively. Along the boundary of complex or simple regions, related variables are extrapolated from the other regions. As a result, the physical information can be exchanged between different regions and the computing regions are tightly coupled. Finally in this paper, an example of wave creation and propagation is given to show the feasibility of the algorithm.%针对在海啸等模拟中,只有在灾害发生的地点附近需要进行三维模拟,而其他区域可以使用二维的波函数进行流体模拟的问题,为了有效地利用计算资源,提出一种计算区域耦合的算法.该算法将计算区域划分为复杂区域和简单区域,分别使用三维Navier-Stokes方程和二维波函数进行模拟;在复杂(或简单)区域的边界处,根据其他区域的信息进行插值,从而在不同计算区域之间进行信息交换,使得不同区域在计算上紧密耦合.最后通过波浪生成和传播的例子,表明了文中算法的可行性和实用性.

  15. Horizontal carbon nanotube alignment.

    Science.gov (United States)

    Cole, Matthew T; Cientanni, Vito; Milne, William I

    2016-09-21

    The production of horizontally aligned carbon nanotubes offers a rapid means of realizing a myriad of self-assembled near-atom-scale technologies - from novel photonic crystals to nanoscale transistors. The ability to reproducibly align anisotropic nanostructures has huge technological value. Here we review the present state-of-the-art in horizontal carbon nanotube alignment. For both in and ex situ approaches, we quantitatively assess the reported linear packing densities alongside the degree of alignment possible for each of these core methodologies. PMID:27546174

  16. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    Most of the work in muon alignment since December 2009 has focused on the geometry reconstruction from the optical systems and improvements in the internal alignment of the DT chambers. The barrel optical alignment system has progressively evolved from reconstruction of single active planes to super-planes (December 09) to a new, full barrel reconstruction. Initial validation studies comparing this full barrel alignment at 0T with photogrammetry provide promising results. In addition, the method has been applied to CRAFT09 data, and the resulting alignment at 3.8T yields residuals from tracks (extrapolated from the tracker) which look smooth, suggesting a good internal barrel alignment with a small overall offset with respect to the tracker. This is a significant improvement, which should allow the optical system to provide a start-up alignment for 2010. The end-cap optical alignment has made considerable progress in the analysis of transfer line data. The next set of alignment constants for CSCs will there...

  17. Orthodontics and Aligners

    Science.gov (United States)

    ... Repairing Chipped Teeth Teeth Whitening Tooth-Colored Fillings Orthodontics and Aligners Straighten teeth for a healthier smile. Orthodontics When consumers think about orthodontics, braces are the ...

  18. Alignment Mirror Mechanisms for Space Use

    Science.gov (United States)

    Jau, Bruno M.; McKinney, Colin M.; Smythe, Robert F.; Palmer, Dean

    2011-01-01

    The paper describes an optical Alignment Mirror Mechanism (AMM), and discusses its control scheme. The mirror's angular positioning accuracy requirement is +/- 0.2 arc-sec. This requires the mirror's linear positioning actuators to have a positioning accuracy of +/- 109 nm to enable the mirror to meet the angular tip/tilt accuracy requirement. Demonstrated capabilities are +/- 35 nm linear positioning capability at the actuator, which translates into +/- 0.07 arc-sec angular mirror positioning accuracy.

  19. Plasmonic Properties of Vertically Aligned Nanowire Arrays

    Directory of Open Access Journals (Sweden)

    Hua Qi

    2012-01-01

    Full Text Available Nanowires (NWs/Ag sheath composites were produced to investigate plasmonic coupling between vertically aligned NWs for surface-enhanced Raman scattering (SERS applications. In this investigation, two types of vertical NW arrays were studied; those of ZnO NWs grown on nanosphere lithography patterned sapphire substrate via vapor-liquid-solid (VLS mechanism and Si NW arrays produced by wet chemical etching. Both types of vertical NW arrays were coated with a thin layer of silver by electroless silver plating for SERS enhancement studies. The experimental results show extremely strong SERS signals due to plasmonic coupling between the NWs, which was verified by COMSOL electric field simulations. We also compared the SERS enhancement intensity of aligned and random ZnO NWs, indicating that the aligned NWs show much stronger and repeatable SERS signal than those grown in nonaligned geometries.

  20. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    Since December, the muon alignment community has focused on analyzing the data recorded so far in order to produce new DT and CSC Alignment Records for the second reprocessing of CRAFT data. Two independent algorithms were developed which align the DT chambers using global tracks, thus providing, for the first time, a relative alignment of the barrel with respect to the tracker. These results are an important ingredient for the second CRAFT reprocessing and allow, for example, a more detailed study of any possible mis-modelling of the magnetic field in the muon spectrometer. Both algorithms are constructed in such a way that the resulting alignment constants are not affected, to first order, by any such mis-modelling. The CSC chambers have not yet been included in this global track-based alignment due to a lack of statistics, since only a few cosmics go through the tracker and the CSCs. A strategy exists to align the CSCs using the barrel as a reference until collision tracks become available. Aligning the ...

  1. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2011-01-01

    The Muon Alignment work now focuses on producing a new track-based alignment with higher track statistics, making systematic studies between the results of the hardware and track-based alignment methods and aligning the barrel using standalone muon tracks. Currently, the muon track reconstruction software uses a hardware-based alignment in the barrel (DT) and a track-based alignment in the endcaps (CSC). An important task is to assess the muon momentum resolution that can be achieved using the current muon alignment, especially for highly energetic muons. For this purpose, cosmic ray muons are used, since the rate of high-energy muons from collisions is very low and the event statistics are still limited. Cosmics have the advantage of higher statistics in the pT region above 100 GeV/c, but they have the disadvantage of having a mostly vertical topology, resulting in a very few global endcap muons. Only the barrel alignment has therefore been tested so far. Cosmic muons traversing CMS from top to bottom are s...

  2. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    The main progress of the muon alignment group since March has been in the refinement of both the track-based alignment for the DTs and the hardware-based alignment for the CSCs. For DT track-based alignment, there has been significant improvement in the internal alignment of the superlayers inside the DTs. In particular, the distance between superlayers is now corrected, eliminating the residual dependence on track impact angles, and good agreement is found between survey and track-based corrections. The new internal geometry has been approved to be included in the forthcoming reprocessing of CRAFT samples. The alignment of DTs with respect to the tracker using global tracks has also improved significantly, since the algorithms use the latest B-field mapping, better run selection criteria, optimized momentum cuts, and an alignment is now obtained for all six degrees of freedom (three spatial coordinates and three rotations) of the aligned DTs. This work is ongoing and at a stage where we are trying to unders...

  3. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2011-01-01

    A new set of muon alignment constants was approved in August. The relative position between muon chambers is essentially unchanged, indicating good detector stability. The main changes concern the global positioning of the barrel and of the endcap rings to match the new Tracker geometry. Detailed studies of the differences between track-based and optical alignment of DTs have proven to be a valuable tool for constraining Tracker alignment weak modes, and this information is now being used as part of the alignment procedure. In addition to the “split-cosmic” analysis used to investigate the muon momentum resolution at high momentum, a new procedure based on reconstructing the invariant mass of di-muons from boosted Zs is under development. Both procedures show an improvement in the momentum precision of Global Muons with respect to Tracker-only Muons. Recent developments in track-based alignment include a better treatment of the tails of residual distributions and accounting for correla...

  4. Fourier-based automatic alignment for improved Visual Cryptography schemes.

    Science.gov (United States)

    Machizaud, Jacques; Chavel, Pierre; Fournel, Thierry

    2011-11-01

    In Visual Cryptography, several images, called "shadow images", that separately contain no information, are overlapped to reveal a shared secret message. We develop a method to digitally register one printed shadow image acquired by a camera with a purely digital shadow image, stored in memory. Using Fourier techniques derived from Fourier Optics concepts, the idea is to enhance and exploit the quasi periodicity of the shadow images, composed by a random distribution of black and white patterns on a periodic sampling grid. The advantage is to speed up the security control or the access time to the message, in particular in the cases of a small pixel size or of large numbers of pixels. Furthermore, the interest of visual cryptography can be increased by embedding the initial message in two shadow images that do not have identical mathematical supports, making manual registration impractical. Experimental results demonstrate the successful operation of the method, including the possibility to directly project the result onto the printed shadow image.

  5. Sample-Align-D: A High Performance Multiple Sequence Alignment System using Phylogenetic Sampling and Domain Decomposition

    CERN Document Server

    Saeed, Fahad

    2009-01-01

    Multiple Sequence Alignment (MSA) is one of the most computationally intensive tasks in Computational Biology. Existing best known solutions for multiple sequence alignment take several hours (in some cases days) of computation time to align, for example, 2000 homologous sequences of average length 300. Inspired by the Sample Sort approach in parallel processing, in this paper we propose a highly scalable multiprocessor solution for the MSA problem in phylogenetically diverse sequences. Our method employs an intelligent scheme to partition the set of sequences into smaller subsets using kmer count based similarity index, referred to as k-mer rank. Each subset is then independently aligned in parallel using any sequential approach. Further fine tuning of the local alignments is achieved using constraints derived from a global ancestor of the entire set. The proposed Sample-Align-D Algorithm has been implemented on a cluster of workstations using MPI message passing library. The accuracy of the proposed solutio...

  6. Finite-difference schemes for anisotropic diffusion

    Energy Technology Data Exchange (ETDEWEB)

    Es, Bram van, E-mail: es@cwi.nl [Centrum Wiskunde and Informatica, P.O. Box 94079, 1090GB Amsterdam (Netherlands); FOM Institute DIFFER, Dutch Institute for Fundamental Energy Research, Association EURATOM-FOM (Netherlands); Koren, Barry [Eindhoven University of Technology (Netherlands); Blank, Hugo J. de [FOM Institute DIFFER, Dutch Institute for Fundamental Energy Research, Association EURATOM-FOM (Netherlands)

    2014-09-01

    In fusion plasmas diffusion tensors are extremely anisotropic due to the high temperature and large magnetic field strength. This causes diffusion, heat conduction, and viscous momentum loss, to effectively be aligned with the magnetic field lines. This alignment leads to different values for the respective diffusive coefficients in the magnetic field direction and in the perpendicular direction, to the extent that heat diffusion coefficients can be up to 10{sup 12} times larger in the parallel direction than in the perpendicular direction. This anisotropy puts stringent requirements on the numerical methods used to approximate the MHD-equations since any misalignment of the grid may cause the perpendicular diffusion to be polluted by the numerical error in approximating the parallel diffusion. Currently the common approach is to apply magnetic field-aligned coordinates, an approach that automatically takes care of the directionality of the diffusive coefficients. This approach runs into problems at x-points and at points where there is magnetic re-connection, since this causes local non-alignment. It is therefore useful to consider numerical schemes that are tolerant to the misalignment of the grid with the magnetic field lines, both to improve existing methods and to help open the possibility of applying regular non-aligned grids. To investigate this, in this paper several discretization schemes are developed and applied to the anisotropic heat diffusion equation on a non-aligned grid.

  7. Alignment for CSR

    International Nuclear Information System (INIS)

    Cooled Storage Ring of Heavy Ion Research Facility in Lanzhou (HIRFL-CSR) belongs to China great scientific project in China. The alignment for it is very difficult because of very large area and very high accuracy. For the special case in HIRFL-CSR, some new methods and new instruments are used, including the construction of survey control network, the usage of laser tracker, and CSR alignment database system with applications developed to store and analyze data. The author describes the whole procedure of CSR alignment

  8. Galaxy Alignments: An Overview

    Science.gov (United States)

    Joachimi, Benjamin; Cacciato, Marcello; Kitching, Thomas D.; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Hoekstra, Henk; Kiessling, Alina; Kirk, Donnacha; Rassat, Anais

    2015-11-01

    The alignments between galaxies, their underlying matter structures, and the cosmic web constitute vital ingredients for a comprehensive understanding of gravity, the nature of matter, and structure formation in the Universe. We provide an overview on the state of the art in the study of these alignment processes and their observational signatures, aimed at a non-specialist audience. The development of the field over the past one hundred years is briefly reviewed. We also discuss the impact of galaxy alignments on measurements of weak gravitational lensing, and discuss avenues for making theoretical and observational progress over the coming decade.

  9. Galaxy alignments: An overview

    CERN Document Server

    Joachimi, Benjamin; Kitching, Thomas D; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Hoekstra, Henk; Kiessling, Alina; Kirk, Donnacha; Rassat, Anais

    2015-01-01

    The alignments between galaxies, their underlying matter structures, and the cosmic web constitute vital ingredients for a comprehensive understanding of gravity, the nature of matter, and structure formation in the Universe. We provide an overview on the state of the art in the study of these alignment processes and their observational signatures, aimed at a non-specialist audience. The development of the field over the past one hundred years is briefly reviewed. We also discuss the impact of galaxy alignments on measurements of weak gravitational lensing, and discuss avenues for making theoretical and observational progress over the coming decade.

  10. Discriminative Shape Alignment

    DEFF Research Database (Denmark)

    Loog, M.; de Bruijne, M.

    2009-01-01

    The alignment of shape data to a common mean before its subsequent processing is an ubiquitous step within the area shape analysis. Current approaches to shape analysis or, as more specifically considered in this work, shape classification perform the alignment in a fully unsupervised way......, not taking into account that eventually the shapes are to be assigned to two or more different classes. This work introduces a discriminative variation to well-known Procrustes alignment and demonstrates its benefit over this classical method in shape classification tasks. The focus is on two...

  11. Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)

    OpenAIRE

    Martin, A. C. R.

    2014-01-01

    The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI li...

  12. Splitting schemes for poroelasticity and thermoelasticity problems

    OpenAIRE

    Kolesov, A. E.; Vabishchevich, P. N.; Vasilyeva, M. V.

    2013-01-01

    In this work, we consider the coupled systems of linear unsteady partial differential equations, which arise in the modeling of poroelasticity processes. Stability estimates of weighted difference schemes for the coupled system of equations are presented. Approximation in space is based on the finite element method. We construct splitting schemes and give some numerical comparisons for typical poroelasticity problems. The results of numerical simulation of a 3D problem are presented. Special ...

  13. Tidal alignment of galaxies

    CERN Document Server

    Blazek, Jonathan; Seljak, Uroš

    2015-01-01

    We develop an analytic model for galaxy intrinsic alignments (IA) based on the theory of tidal alignment. We calculate all relevant nonlinear corrections at one-loop order, including effects from nonlinear density evolution, galaxy biasing, and source density weighting. Contributions from density weighting are found to be particularly important and lead to bias dependence of the IA amplitude, even on large scales. This effect may be responsible for much of the luminosity dependence in IA observations. The increase in IA amplitude for more highly biased galaxies reflects their locations in regions with large tidal fields. We also consider the impact of smoothing the tidal field on halo scales. We compare the performance of this consistent nonlinear model in describing the observed alignment of luminous red galaxies with the linear model as well as the frequently used "nonlinear alignment model," finding a significant improvement on small and intermediate scales. We also show that the cross-correlation between ...

  14. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    Since September, the muon alignment system shifted from a mode of hardware installation and commissioning to operation and data taking. All three optical subsystems (Barrel, Endcap and Link alignment) have recorded data before, during and after CRAFT, at different magnetic fields and during ramps of the magnet. This first data taking experience has several interesting goals: •    study detector deformations and movements under the influence of the huge magnetic forces; •    study the stability of detector structures and of the alignment system over long periods, •    study geometry reproducibility at equal fields (specially at 0T and 3.8T); •    reconstruct B=0T geometry and compare to nominal/survey geometries; •    reconstruct B=3.8T geometry and provide DT and CSC alignment records for CMSSW. However, the main goal is to recons...

  15. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2012-01-01

      A new muon alignment has been produced for 2012 A+B data reconstruction. It uses the latest Tracker alignment and single-muon data samples to align both DTs and CSCs. Physics validation has been performed and shows a modest improvement in stand-alone muon momentum resolution in the barrel, where the alignment is essentially unchanged from the previous version. The reference-target track-based algorithm using only collision muons is employed for the first time to align the CSCs, and a substantial improvement in resolution is observed in the endcap and overlap regions for stand-alone muons. This new alignment is undergoing the approval process and is expected to be deployed as part of a new global tag in the beginning of December. The pT dependence of the φ-bias in curvature observed in Monte Carlo was traced to a relative vertical misalignment between the Tracker and barrel muon systems. Moving the barrel as a whole to match the Tracker cures this pT dependence, leaving only the &phi...

  16. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    S. Szillasi

    2013-01-01

    The CMS detector has been gradually opened and whenever a wheel became exposed the first operation was the removal of the MABs, the sensor structures of the Hardware Barrel Alignment System. By the last days of June all 36 MABs have arrived at the Alignment Lab at the ISR where, as part of the Alignment Upgrade Project, they are refurbished with new Survey target holders. Their electronic checkout is on the way and finally they will be recalibrated. During LS1 the alignment system will be upgraded in order to allow more precise reconstruction of the MB4 chambers in Sector 10 and Sector 4. This requires new sensor components, so called MiniMABs (pictured below), that have already been assembled and calibrated. Image 6: Calibrated MiniMABs are ready for installation For the track-based alignment, the systematic uncertainties of the algorithm are under scrutiny: this study will enable the production of an improved Monte Carlo misalignment scenario and to update alignment position errors eventually, crucial...

  17. Incremental Alignment Manifold Learning

    Institute of Scientific and Technical Information of China (English)

    Zhi Han; De-Yu Meng; Zong-Sen Xu; Nan-Nan Gu

    2011-01-01

    A new manifold learning method, called incremental alignment method (IAM), is proposed for nonlinear dimensionality reduction of high dimensional data with intrinsic low dimensionality. The main idea is to incrementally align low-dimensional coordinates of input data patch-by-patch to iteratively generate the representation of the entire dataset. The method consists of two major steps, the incremental step and the alignment step. The incremental step incrementally searches neighborhood patch to be aligned in the next step, and the alignment step iteratively aligns the low-dimensional coordinates of the neighborhood patch searched to generate the embeddings of the entire dataset. Compared with the existing manifold learning methods, the proposed method dominates in several aspects: high efficiency, easy out-of-sample extension, well metric-preserving, and averting of the local minima issue. All these properties are supported by a series of experiments performed on the synthetic and real-life datasets. In addition, the computational complexity of the proposed method is analyzed, and its efficiency is theoretically argued and experimentally demonstrated.

  18. Comparison of time marching method coupled with a higher-order TVD scheme for time-dependent advection equation; Hiteijo iryu hoteishiki ni taisuru koji seido TVD jikan shinkoho no hikaku kento

    Energy Technology Data Exchange (ETDEWEB)

    Akamatsu, M. [Kawasaki Heavy Industries, Ltd., Kobe (Japan)

    1995-06-25

    Time marching methods coupled with a third order upwind TVD scheme are compared from the viewpoints of accuracy, memory requirement and computational cost. The methods examined are the second and the third order Runge-Kutta presented by Shu and Osher, the explicit Euler, the second order Adams-Bashforth, the implicit Euler and the Crank-Nicolson methods. Benchmark problems on time-dependent linear adjective transport are solved using these methods. As a result, the Shu and Osher`s Runge-Kutta methods of the second and the third order are recommended. The explicit Euler method suffers from oversteppning of the gradient due to numerical diffusion with a negative coefficient. The Adams-Bashforth method is inferior to the Runge-Kutta method in accuracy and memory requirement. The Crank-Nicolson method produces solutions as accurate as the Runge-Kutta method, but requires much CPU time due to the nonlinear feature of the TVD flux limiter. 9 refs., 5 figs., 1 tab.

  19. Conformational fluctuations affect protein alignment in dilute liquid crystal media

    DEFF Research Database (Denmark)

    Louhivuori, M.; Otten, R.; Lindorff-Larsen, Kresten;

    2006-01-01

    The discovery of dilute liquid crystalline media to align biological macromolecules has opened many new possibilities to study protein and nucleic acid structures by NMR spectroscopy. We inspect the basic alignment phenomenon for an ensemble of protein conformations to deduce relative contributions...... of each member to the residual dipolar coupling signals. We find that molecular fluctuations can affect the alignment and discover a resulting emphasis of certain conformations. However, the internal fluctuations are largely uncorrelated with those of the alignment, implying that proteins have liquidlike...

  20. Study of Physical Scheme for 10 MW Accelerator-driven Fast-thermal Coupled Gas-cooled Reactor%加速器驱动10 MW快热耦合气冷堆物理方案研究

    Institute of Scientific and Technical Information of China (English)

    李金阳; 顾龙; 秦长平; 王大伟; 刘璐

    2013-01-01

    The accelerator-driven sub-critical system has promising future in transmuta-tion of nuclear spent fuels .A physical design of a 10MW fast-thermal spectrum gas-cooled reactor was studied .The program COUPLE2.0 ,which couples with MCNPX and ORIGEN ,was applied to compute this scheme ,and the continuous energy neutron cross section was obtained by the nuclear data library of ENDF-7 which was modified with five different temperatures :300 ,600 ,900 ,1 500 ,and 2500K .The physical pa-rameters such as kef ,proton efficiency ,delayed neutron fraction and accelerator current varying with the burnup time were obtained .The system during 350 d burnup was obtained and the transmutation capability was analyzed by the further calculation .It is found that during the 350 d burnup ,the variations of kef and accelerator current are relatively small .The system has good transmutation capability with the transmutation support ratio of 24.86 .%加速器驱动的次临界系统(ADS )在实现嬗变核废料方面具有良好的前景。对加速器驱动10 M W次临界快热耦合能谱气冷堆的物理方案进行了设计和研究,利用 MCNPX和ORIGEN耦合的计算程序COUPLE2.0对该方案进行了计算,其中,中子截面采用ENDF-7处理后得到的5个温度300、600、900、1500、2500 K下的连续能量核数据库。得到该方案350 d燃耗期间的 kef 、质子效率、缓发中子份额以及加速器束流强度的变化。进而计算得到了该方案的燃耗信息,并分析了该方案的嬗变能力。结果表明,该方案在350 d燃耗期间的 kef 、加速器束流强度变化较小,嬗变支持比为24.86,具有较好的嬗变效果。

  1. Curriculum Alignment Research Suggests that Alignment Can Improve Student Achievement

    Science.gov (United States)

    Squires, David

    2012-01-01

    Curriculum alignment research has developed showing the relationship among three alignment categories: the taught curriculum, the tested curriculum and the written curriculum. Each pair (for example, the taught and the written curriculum) shows a positive impact for aligning those results. Following this, alignment results from the Third…

  2. Time Interference Alignment via Delay Offset for Long Delay Networks

    CERN Document Server

    Blasco, Francisco Lazaro; Bauch, Gerhard

    2011-01-01

    Time Interference Alignment is a flavor of Interference Alignment that increases the network capacity by suitably staggering the transmission delays of the senders. In this work the analysis of the existing literature is generalized and the focus is on the computation of the dof for networks with randomly placed users in a n-dimensional Euclidean space. In the basic case without coordination among the transmitters analytical expressions of the sum dof can be derived. If the transmit delays are coordinated, in 20% of the cases time Interference Alignment yields additional dof with respect to orthogonal access schemes. The potential capacity improvements for satellite networks are also investigated.

  3. Simulation study of three-dimensional laser cooling schemes for fast stored beams

    International Nuclear Information System (INIS)

    Molecular dynamics (MD) approach is employed to study laser cooling of fast circulating beams in a storage ring. The authors compare several three-dimensional (3D) cooling methods, examining achievable minimum beam temperature. In particular, the stress is put upon the three coupling schemes, i.e., the dispersion-coupling scheme, the coupling-cavity scheme, and the tapered cooling scheme. They show that beam temperatures much lower than the currently possible level could be reached with these schemes

  4. MaxAlign: maximizing usable data in an alignment

    DEFF Research Database (Denmark)

    Oliveira, Rodrigo Gouveia; Sackett, Peter Wad; Pedersen, Anders Gorm

    2007-01-01

    BACKGROUND: The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for instance, gapped columns are often discarded entirely from the alignment. RESULTS: MaxAlign is a program that optimizes...... the alignment prior to such analyses. Specifically, it maximizes the number of nucleotide (or amino acid) symbols that are present in gap-free columns - the alignment area - by selecting the optimal subset of sequences to exclude from the alignment. MaxAlign can be used prior to phylogenetic and bioinformatical...... analyses as well as in other situations where this form of alignment improvement is useful. In this work we test MaxAlign's performance in these tasks and compare the accuracy of phylogenetic estimates including and excluding gapped columns from the analysis, with and without processing with MaxAlign...

  5. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    2012-01-01

      The new alignment for the DT chambers has been successfully used in physics analysis starting with the 52X Global Tag. The remaining main areas of development over the next few months will be preparing a new track-based CSC alignment and producing realistic APEs (alignment position errors) and MC misalignment scenarios to match the latest muon alignment constants. Work on these items has been delayed from the intended timeline, mostly due to a large involvement of the muon alignment man-power in physics analyses over the first half of this year. As CMS keeps probing higher and higher energies, special attention must be paid to the reconstruction of very-high-energy muons. Recent muon POG reports from mid-June show a φ-dependence in curvature bias in Monte Carlo samples. This bias is observed already at the tracker level, where it is constant with muon pT, while it grows with pT as muon chamber information is added to the tracks. Similar studies show a much smaller effect in data, at le...

  6. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    M. Dallavalle

    2013-01-01

    A new Muon misalignment scenario for 2011 (7 TeV) Monte Carlo re-processing was re-leased. The scenario is based on running of standard track-based reference-target algorithm (exactly as in data) using single-muon simulated sample (with the transverse-momentum spectrum matching data). It used statistics similar to what was used for alignment with 2011 data, starting from an initially misaligned Muon geometry from uncertainties of hardware measurements and using the latest Tracker misalignment geometry. Validation of the scenario (with muons from Z decay and high-pT simulated muons) shows that it describes data well. The study of systematic uncertainties (dominant by now due to huge amount of data collected by CMS and used for muon alignment) is finalised. Realistic alignment position errors are being obtained from the estimated uncertainties and are expected to improve the muon reconstruction performance. Concerning the Hardware Alignment System, the upgrade of the Barrel Alignment is in progress. By now, d...

  7. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2010-01-01

    For the last three months, the Muon Alignment group has focussed on providing a new, improved set of alignment constants for the end-of-year data reprocessing. These constants were delivered on time and approved by the CMS physics validation team on November 17. The new alignment incorporates several improvements over the previous one from March for nearly all sub-systems. Motivated by the loss of information from a hardware failure in May (an entire MAB was lost), the optical barrel alignment has moved from a modular, super-plane reconstruction, to a full, single loop calculation of the entire geometry for all DTs in stations 1, 2 and 3. This makes better use of the system redundancy, mitigating the effect of the information loss. Station 4 is factorised and added afterwards to make the system smaller (and therefore faster to run), and also because the MAB calibration at the MB4 zone is less precise. This new alignment procedure was tested at 0 T against photogrammetry resulting in precisions of the order...

  8. RNA Structural Alignments, Part I

    DEFF Research Database (Denmark)

    Havgaard, Jakob Hull; Gorodkin, Jan

    2014-01-01

    Simultaneous alignment and secondary structure prediction of RNA sequences is often referred to as "RNA structural alignment." A class of the methods for structural alignment is based on the principles proposed by Sankoff more than 25 years ago. The Sankoff algorithm simultaneously folds and aligns...

  9. Strategic Alignment of Business Intelligence

    OpenAIRE

    Cederberg, Niclas

    2010-01-01

    This thesis is about the concept of strategic alignment of business intelligence. It is based on a theoretical foundation that is used to define and explain business intelligence, data warehousing and strategic alignment. By combining a number of different methods for strategic alignment a framework for alignment of business intelligence is suggested. This framework addresses all different aspects of business intelligence identified as relevant for strategic alignment of business intelligence...

  10. Orientation and Alignment Echoes

    CERN Document Server

    Karras, G; Billard, F; Lavorel, B; Hartmann, J -M; Faucher, O; Gershnabel, E; Prior, Y; Averbukh, I Sh

    2015-01-01

    We present what is probably the simplest classical system featuring the echo phenomenon - a collection of randomly oriented free rotors with dispersed rotational velocities. Following excitation by a pair of time-delayed impulsive kicks, the mean orientation/alignment of the ensemble exhibits multiple echoes and fractional echoes. We elucidate the mechanism of the echo formation by kick-induced filamentation of phase space, and provide the first experimental demonstration of classical alignment echoes in a thermal gas of CO_2 molecules excited by a pair of femtosecond laser pulses.

  11. Aligning Mental Representations

    DEFF Research Database (Denmark)

    Kano Glückstad, Fumiko

    2013-01-01

    This work introduces a framework that implements asymmetric communication theory proposed by Sperber and Wilson [1]. The framework applies a generalization model known as the Bayesian model of generalization (BMG) [2] for aligning knowledge possessed by two communicating parties. The work focuses...... on the application of the BMG to publicly available datasets, the Leuven natural concept database [3] representing semantic structures of domain knowledge possessed by individual subjects [3]. Results indicate that the BMG is potentially a model applicable to simulating the alignment of domain knowledge from...

  12. PILOT optical alignment

    Science.gov (United States)

    Longval, Y.; Mot, B.; Ade, P.; André, Y.; Aumont, J.; Baustista, L.; Bernard, J.-Ph.; Bray, N.; de Bernardis, P.; Boulade, O.; Bousquet, F.; Bouzit, M.; Buttice, V.; Caillat, A.; Charra, M.; Chaigneau, M.; Crane, B.; Crussaire, J.-P.; Douchin, F.; Doumayrou, E.; Dubois, J.-P.; Engel, C.; Etcheto, P.; Gélot, P.; Griffin, M.; Foenard, G.; Grabarnik, S.; Hargrave, P..; Hughes, A.; Laureijs, R.; Lepennec, Y.; Leriche, B.; Maestre, S.; Maffei, B.; Martignac, J.; Marty, C.; Marty, W.; Masi, S.; Mirc, F.; Misawa, R.; Montel, J.; Montier, L.; Narbonne, J.; Nicot, J.-M.; Pajot, F.; Parot, G.; Pérot, E.; Pimentao, J.; Pisano, G.; Ponthieu, N.; Ristorcelli, I.; Rodriguez, L.; Roudil, G.; Salatino, M.; Savini, G.; Simonella, O.; Saccoccio, M.; Tapie, P.; Tauber, J.; Torre, J.-P.; Tucker, C.

    2016-07-01

    PILOT is a balloon-borne astronomy experiment designed to study the polarization of dust emission in the diffuse interstellar medium in our Galaxy at wavelengths 240 μm with an angular resolution about two arcminutes. Pilot optics is composed an off-axis Gregorian type telescope and a refractive re-imager system. All optical elements, except the primary mirror, are in a cryostat cooled to 3K. We combined the optical, 3D dimensional measurement methods and thermo-elastic modeling to perform the optical alignment. The talk describes the system analysis, the alignment procedure, and finally the performances obtained during the first flight in September 2015.

  13. Reducing beam shaper alignment complexity: diagnostic techniques for alignment and tuning

    Science.gov (United States)

    Lizotte, Todd E.

    2011-10-01

    Safe and efficient optical alignment is a critical requirement for industrial laser systems used in a high volume manufacturing environment. Of specific interest is the development of techniques to align beam shaping optics within a beam line; having the ability to instantly verify by a qualitative means that each element is in its proper position as the beam shaper module is being aligned. There is a need to reduce these types of alignment techniques down to a level where even a newbie to optical alignment will be able to complete the task. Couple this alignment need with the fact that most laser system manufacturers ship their products worldwide and the introduction of a new set of variables including cultural and language barriers, makes this a top priority for manufacturers. Tools and methodologies for alignment of complex optical systems need to be able to cross these barriers to ensure the highest degree of up time and reduce the cost of maintenance on the production floor. Customers worldwide, who purchase production laser equipment, understand that the majority of costs to a manufacturing facility is spent on system maintenance and is typically the largest single controllable expenditure in a production plant. This desire to reduce costs is driving the trend these days towards predictive and proactive, not reactive maintenance of laser based optical beam delivery systems [10]. With proper diagnostic tools, laser system developers can develop proactive approaches to reduce system down time, safe guard operational performance and reduce premature or catastrophic optics failures. Obviously analytical data will provide quantifiable performance standards which are more precise than qualitative standards, but each have a role in determining overall optical system performance [10]. This paper will discuss the use of film and fluorescent mirror devices as diagnostic tools for beam shaper module alignment off line or in-situ. The paper will also provide an overview

  14. Large Telescope Segmented Primary Mirror Alignment

    Science.gov (United States)

    Rud, Mayer

    2010-01-01

    A document discusses a broadband (white light) point source, located at the telescope Cassegrain focus, which generates a cone of light limited by the hole in the secondary mirror (SM). It propagates to the aspheric null-mirror, which is optimized to make all the reflected rays to be normal to the primary mirror (PM) upon reflection. PM retro-reflects the rays back through the system for wavefront analysis. The point source and the wavefront analysis subsystems are all located behind the PM. The PM phasing is absolute (white light) and does not involve the SM. A relatively small, aspheric null-mirror located near the PM center of curvature has been designed to deliver the high level of optical wavefront correction. The phasing of the segments is absolute due to the use of a broadband source. The segmented PM is optically aligned independently and separately from the SM alignment. The separation of the PM segments alignment from the PM to the SM, and other telescope optics alignments, may be a significant advantage, eliminating the errors coupling. The point source of this concept is fully cooperative, unlike a star or laser-generated guide-star, providing the necessary brightness for the optimal S/N ratio, the spectral content, and the stable on-axis position. This concept can be implemented in the lab for the PM initial alignment, or made to be a permanent feature of the space-based or groundbased telescope.

  15. LevelScheme: A level scheme drawing and scientific figure preparation system for Mathematica

    OpenAIRE

    Caprio, M. A.

    2005-01-01

    LevelScheme is a scientific figure preparation system for Mathematica. The main emphasis is upon the construction of level schemes, or level energy diagrams, as used in nuclear, atomic, molecular, and hadronic physics. LevelScheme also provides a general infrastructure for the preparation of publication-quality figures, including support for multipanel and inset plotting, customizable tick mark generation, and various drawing and labeling tasks. Coupled with Mathematica's plotting functions a...

  16. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and Y. Pakhotin

    2012-01-01

      A new track-based alignment for the DT chambers is ready for deployment: an offline tag has already been produced which will become part of the 52X Global Tag. This alignment was validated within the muon alignment group both at low and high momentum using a W/Z skim sample. It shows an improved mass resolution for pairs of stand-alone muons, improved curvature resolution at high momentum, and improved DT segment extrapolation residuals. The validation workflow for high-momentum muons used to depend solely on the “split cosmics” method, looking at the curvature difference between muon tracks reconstructed in the upper or lower half of CMS. The validation has now been extended to include energetic muons decaying from heavily boosted Zs: the di-muon invariant mass for global and stand-alone muons is reconstructed, and the invariant mass resolution is compared for different alignments. The main areas of development over the next few months will be preparing a new track-based C...

  17. On the Beamforming Design for Efficient Interference Alignment

    CERN Document Server

    Choi, Sang Won; Chung, Sae-Young

    2009-01-01

    An efficient interference alignment (IA) scheme is developed for $K$-user single-input single-output frequency selective fading interference channels. The main idea is to steer the transmit beamforming matrices such that at each receiver the subspace dimensions occupied by interference-free desired streams are asymptotically the same as those occupied by all interferences. Our proposed scheme achieves a higher multiplexing gain at any given number of channel realizations in comparison with the original IA scheme, which is known to achieve the optimal multiplexing gain asymptotically.

  18. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal

    2011-08-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  19. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal

    2011-11-01

    Bioinformatics database is growing exponentially in size. Processing these large amount of data may take hours of time even if super computers are used. One of the most important processing tool in Bioinformatics is sequence alignment. We introduce fast alignment algorithm, called \\'Alignment By Scanning\\' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the \\'GAP\\' (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 51% enhancement in alignment score when it is compared with the GAP Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  20. Comparison of Three Schemes for Intermediate Data Rate Frame Synchronization

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Based on the frame structure of intermediate data rate (IDR) modem for satellite communication, a new method for searching frame synchronization called group frame synchronization is proposed. At the same time, a candidate scheme in the classical frame synchronization and two candidate schemes in the group frame synchronization are presented, and the circuits for each scheme are designed in order to abstract the frame alignment signals from received data. Their implementation complexity and performances are also computed and given. Based on the analysis and performance comparison, a reasonable scheme is chosen and then verified through software simulation and hardware impletentation.

  1. CWDM based HDMI interconnect incorporating passively aligned POF linked optical subassembly modules

    Science.gov (United States)

    Lee, Hak-Soon; Lee, Sang-Shin; Son, Yung-Sung

    2011-08-01

    A four-channel transmitter OSA (TOSA) and a receiver optical sub-assembly (ROSA) module were presented. They take advantage of a coarse WDM (CWDM) scheme, employing two types of VCSELs at 780 and 850 nm, where no wavelength filters are involved in the TOSA. The ROSA and TOSA were constructed through a fully passive alignment process using components produced by virtue of a cost effective plastic injection molding technique. In order to build a high quality optical HDMI interconnect, four channel optical links between these modules ware established via two graded-index plastic optical fibers (GI-POFs). The HDMI interconnect was thoroughly evaluated in terms of the alignment tolerance, the light beam propagation, and the data transmission capability. For the ROSA, the measured tolerance, as affected by the photodiode alignment, was ~45 μm and over 200 μm for the transverse and longitudinal directions, respectively. For the TOSA, the tolerance, which is mostly dependent upon the VCSEL alignment, was ~20 μm and more than 200 μm for the transverse and longitudinal directions, respectively. The beam profiles for the TOSA and ROSA were monitored to confirm their feasibility from the optical coupling perspective. A digital signal at 2.5 Gb/s was efficiently transmitted through the HDMI interconnect with a bit error ratio of below 10-16. A 1080p HDMI signal from a Blu-ray player was delivered through the interconnect to an LCD monitor and successfully displayed a high quality video.

  2. MUSE alignment onto VLT

    Science.gov (United States)

    Laurent, Florence; Renault, Edgard; Boudon, Didier; Caillier, Patrick; Daguisé, Eric; Dupuy, Christophe; Jarno, Aurélien; Lizon, Jean-Louis; Migniau, Jean-Emmanuel; Nicklas, Harald; Piqueras, Laure

    2014-07-01

    MUSE (Multi Unit Spectroscopic Explorer) is a second generation Very Large Telescope (VLT) integral field spectrograph developed for the European Southern Observatory (ESO). It combines a 1' x 1' field of view sampled at 0.2 arcsec for its Wide Field Mode (WFM) and a 7.5"x7.5" field of view for its Narrow Field Mode (NFM). Both modes will operate with the improved spatial resolution provided by GALACSI (Ground Atmospheric Layer Adaptive Optics for Spectroscopic Imaging), that will use the VLT deformable secondary mirror and 4 Laser Guide Stars (LGS) foreseen in 2015. MUSE operates in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently commissioning MUSE in the Very Large Telescope for the Preliminary Acceptance in Chile, scheduled for September, 2014. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2012 and 2013, all MUSE subsystems were integrated, aligned and tested to the P.I. institute at Lyon. After successful PAE in September 2013, MUSE instrument was shipped to the Very Large Telescope in Chile where that was aligned and tested in ESO integration hall at Paranal. After, MUSE was directly transported, fully aligned and without any optomechanical dismounting, onto VLT telescope where the first light was overcame the 7th of February, 2014. This paper describes the alignment procedure of the whole MUSE instrument with respect to the Very Large Telescope (VLT). It describes how 6 tons could be move with accuracy better than 0.025mm and less than 0.25 arcmin in order to reach alignment requirements. The success

  3. Multifunctional bowtie-shaped ridge aperture for overlay alignment in plasmonic direct writing lithography using a contact probe.

    Science.gov (United States)

    Oh, Seonghyeon; Lee, Taekyong; Hahn, Jae W

    2013-07-01

    We propose a scheme of overlay alignment for plasmonic lithography using a scanning contact probe. Using two resonances of a ridge aperture in a metal film, we introduce the aperture's multifunctional characteristics for patterning and alignment at different wavelengths. To verify this idea, we measure an image of an alignment mark using a scanning ridge aperture and determine the reference point for the alignment. We then analyze the uncertainty of the alignment method with respect to the image data noise and compare the numerical results with the experimental results. The uncertainty of the overlay alignment method is shown to be less than approximately 2 nm.

  4. Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

    Directory of Open Access Journals (Sweden)

    Daniels Noah M

    2012-10-01

    Full Text Available Abstract Background The quality of multiple protein structure alignments are usually computed and assessed based on geometric functions of the coordinates of the backbone atoms from the protein chains. These purely geometric methods do not utilize directly protein sequence similarity, and in fact, determining the proper way to incorporate sequence similarity measures into the construction and assessment of protein multiple structure alignments has proved surprisingly difficult. Results We present Formatt, a multiple structure alignment based on the Matt purely geometric multiple structure alignment program, that also takes into account sequence similarity when constructing alignments. We show that Formatt outperforms Matt and other popular structure alignment programs on the popular HOMSTRAD benchmark. For the SABMark twilight zone benchmark set that captures more remote homology, Formatt and Matt outperform other programs; depending on choice of embedded sequence aligner, Formatt produces either better sequence and structural alignments with a smaller core size than Matt, or similarly sized alignments with better sequence similarity, for a small cost in average RMSD. Conclusions Considering sequence information as well as purely geometric information seems to improve quality of multiple structure alignments, though defining what constitutes the best alignment when sequence and structural measures would suggest different alignments remains a difficult open question.

  5. Inflation by alignment

    Energy Technology Data Exchange (ETDEWEB)

    Burgess, C.P. [PH -TH Division, CERN,CH-1211, Genève 23 (Switzerland); Department of Physics & Astronomy, McMaster University,1280 Main Street West, Hamilton ON (Canada); Perimeter Institute for Theoretical Physics,31 Caroline Street North, Waterloo ON (Canada); Roest, Diederik [Van Swinderen Institute for Particle Physics and Gravity, University of Groningen,Nijenborgh 4, 9747 AG Groningen (Netherlands)

    2015-06-08

    Pseudo-Goldstone bosons (pGBs) can provide technically natural inflatons, as has been comparatively well-explored in the simplest axion examples. Although inflationary success requires trans-Planckian decay constants, f≳M{sub p}, several mechanisms have been proposed to obtain this, relying on (mis-)alignments between potential and kinetic energies in multiple-field models. We extend these mechanisms to a broader class of inflationary models, including in particular the exponential potentials that arise for pGB potentials based on noncompact groups (and so which might apply to moduli in an extra-dimensional setting). The resulting potentials provide natural large-field inflationary models and can predict a larger primordial tensor signal than is true for simpler single-field versions of these models. In so doing we provide a unified treatment of several alignment mechanisms, showing how each emerges as a limit of the more general setup.

  6. Orbit IMU alignment: Error analysis

    Science.gov (United States)

    Corson, R. W.

    1980-01-01

    A comprehensive accuracy analysis of orbit inertial measurement unit (IMU) alignments using the shuttle star trackers was completed and the results are presented. Monte Carlo techniques were used in a computer simulation of the IMU alignment hardware and software systems to: (1) determine the expected Space Transportation System 1 Flight (STS-1) manual mode IMU alignment accuracy; (2) investigate the accuracy of alignments in later shuttle flights when the automatic mode of star acquisition may be used; and (3) verify that an analytical model previously used for estimating the alignment error is a valid model. The analysis results do not differ significantly from expectations. The standard deviation in the IMU alignment error for STS-1 alignments was determined to the 68 arc seconds per axis. This corresponds to a 99.7% probability that the magnitude of the total alignment error is less than 258 arc seconds.

  7. Nuclear reactor alignment plate configuration

    Science.gov (United States)

    Altman, David A; Forsyth, David R; Smith, Richard E; Singleton, Norman R

    2014-01-28

    An alignment plate that is attached to a core barrel of a pressurized water reactor and fits within slots within a top plate of a lower core shroud and upper core plate to maintain lateral alignment of the reactor internals. The alignment plate is connected to the core barrel through two vertically-spaced dowel pins that extend from the outside surface of the core barrel through a reinforcement pad and into corresponding holes in the alignment plate. Additionally, threaded fasteners are inserted around the perimeter of the reinforcement pad and into the alignment plate to further secure the alignment plate to the core barrel. A fillet weld also is deposited around the perimeter of the reinforcement pad. To accomodate thermal growth between the alignment plate and the core barrel, a gap is left above, below and at both sides of one of the dowel pins in the alignment plate holes through with the dowel pins pass.

  8. Alignment of concerns

    DEFF Research Database (Denmark)

    Andersen, Tariq Osman; Bansler, Jørgen P.; Kensing, Finn;

    E-health promises to enable and support active patient participation in chronic care. However, these fairly recent innovations are complicated matters and emphasize significant challenges, such as patients’ and clinicians’ different ways of conceptualizing disease and illness. Informed by insights...... from medical phenomenology and our own empirical work in telemonitoring and medical care of heart patients, we propose a design rationale for e-health systems conceptualized as the ‘alignment of concerns’....

  9. Alignment reference device

    Science.gov (United States)

    Patton, Gail Y.; Torgerson, Darrel D.

    1987-01-01

    An alignment reference device provides a collimated laser beam that minimizes angular deviations therein. A laser beam source outputs the beam into a single mode optical fiber. The output end of the optical fiber acts as a source of radiant energy and is positioned at the focal point of a lens system where the focal point is positioned within the lens. The output beam reflects off a mirror back to the lens that produces a collimated beam.

  10. Seeking the perfect alignment

    CERN Multimedia

    2002-01-01

    The first full-scale tests of the ATLAS Muon Spectrometer are about to begin in Prévessin. The set-up includes several layers of Monitored Drift Tubes Chambers (MDTs) and will allow tests of the performance of the detectors and of their highly accurate alignment system.   Monitored Drift Chambers in Building 887 in Prévessin, where they are just about to be tested. Muon chambers are keeping the ATLAS Muon Spectrometer team quite busy this summer. Now that most people go on holiday, the beam and alignment tests for these chambers are just starting. These chambers will measure with high accuracy the momentum of high-energy muons, and this implies very demanding requirements for their alignment. The MDT chambers consist of drift tubes, which are gas-filled metal tubes, 3 cm in diameter, with wires running down their axes. With high voltage between the wire and the tube wall, the ionisation due to traversing muons is detected as electrical pulses. With careful timing of the pulses, the position of the muon t...

  11. Synchronization of general complex networks via adaptive control schemes

    Indian Academy of Sciences (India)

    Ping He; Chun-Guo Jing; Chang-Zhong Chen; Tao Fan; Hassan Saberi Nik

    2014-03-01

    In this paper, the synchronization problem of general complex networks is investigated by using adaptive control schemes. Time-delay coupling, derivative coupling, nonlinear coupling etc. exist universally in real-world complex networks. The adaptive synchronization scheme is designed for the complex network with multiple class of coupling terms. A criterion guaranteeing synchronization of such complex networks is established by employing the Lyapunov stability theorem and adaptive control schemes. Finally, an illustrative example with numerical simulation is given to show the feasibility and efficiency of theoretical results.

  12. Alignment as a Teacher Variable

    Science.gov (United States)

    Porter, Andrew C.; Smithson, John; Blank, Rolf; Zeidner, Timothy

    2007-01-01

    With the exception of the procedures developed by Porter and colleagues (Porter, 2002), other methods of defining and measuring alignment are essentially limited to alignment between tests and standards. Porter's procedures have been generalized to investigating the alignment between content standards, tests, textbooks, and even classroom…

  13. Renormalization Scheme Dependence and Renormalization Group Summation

    CERN Document Server

    McKeon, D G C

    2016-01-01

    We consider logarithmic contributions to the free energy, instanton effective action and Laplace sum rules in QCD that are a consequence of radiative corrections. Upon summing these contributions by using the renormalization group, all dependence on the renormalization scale parameter mu cancels. The renormalization scheme dependence in these processes is examined, and a renormalization scheme is found in which the effect of higher order radiative corrections is absorbed by the behaviour of the running coupling.

  14. GPCODON ALIGNMENT: A GLOBAL PAIRWISE CODON BASED SEQUENCE ALIGNMENT APPROACH

    Directory of Open Access Journals (Sweden)

    Zeinab A. Fareed

    2016-02-01

    Full Text Available The alignment of two DNA sequences is a basic step in the analysis of biological data. Sequencing a long DNA sequence is one of the most interesting problems in bioinformatics. Several techniques have been developed to solve this sequence alignment problem like dynamic programming and heuristic algorithms. In this paper, we introduce (GPCodon alignment a pairwise DNA-DNA method for global sequence alignment that improves the accuracy of pairwise sequence alignment. We use a new scoring matrix to produce the final alignment called the empirical codon substitution matrix. Using this matrix in our technique enabled the discovery of new relationships between sequences that could not be discovered using traditional matrices. In addition, we present experimental results that show the performance of the proposed technique over eleven datasets of average length of 2967 bps. We compared the efficiency and accuracy of our techniques against a comparable tool called “Pairwise Align Codons” [1].

  15. Finite Boltzmann schemes

    NARCIS (Netherlands)

    Sman, van der R.G.M.

    2006-01-01

    In the special case of relaxation parameter = 1 lattice Boltzmann schemes for (convection) diffusion and fluid flow are equivalent to finite difference/volume (FD) schemes, and are thus coined finite Boltzmann (FB) schemes. We show that the equivalence is inherent to the homology of the Maxwell-Bolt

  16. Splitting scheme for poroelasticity and thermoelasticity problems

    Science.gov (United States)

    Vabishchevich, P. N.; Vasil'eva, M. V.; Kolesov, A. E.

    2014-08-01

    Boundary value problems in thermoelasticity and poroelasticity (filtration consolidation) are solved numerically. The underlying system of equations consists of the Lamé stationary equations for displacements and nonstationary equations for temperature or pressure in the porous medium. The numerical algorithm is based on a finite-element approximation in space. Standard stability conditions are formulated for two-level schemes with weights. Such schemes are numerically implemented by solving a system of coupled equations for displacements and temperature (pressure). Splitting schemes with respect to physical processes are constructed, in which the transition to a new time level is associated with solving separate elliptic problems for the desired displacements and temperature (pressure). Unconditionally stable additive schemes are constructed by choosing a weight of a three-level scheme.

  17. Consistency of non-minimal renormalisation schemes

    CERN Document Server

    Jack, I

    2016-01-01

    Non-minimal renormalisation schemes such as the momentum subtraction scheme (MOM) have frequently been used for physical computations. The consistency of such a scheme relies on the existence of a coupling redefinition linking it to MSbar. We discuss the implementation of this procedure in detail for a general theory and show how to construct the relevant redefinition up to three-loop order, for the case of a general theory of fermions and scalars in four dimensions and a general scalar theory in six dimensions.

  18. Efficient Scheme for Entangling Two Distant Atoms

    Institute of Scientific and Technical Information of China (English)

    PING Yong-Li; LU Dao-Ming; XU Li-Xin; ZHENG Shi-Biao; CHANG Bao-Rong; LIU Hong-Ya

    2008-01-01

    A scheme is presented for the generation of entangled states for two atoms trapped in two distant cavities. In the scheme each atom is resonantly coupled with the respective cavity mode and driven by a strong classical field. The detection of a photon decaying from the cavities and passing through a beam-splitter collapses the atoms to an entangled state. The required atom-field interaction time is very short and thus the decoherence effect is suppressed. Our scheme is within the reach of presently available cavity QED techniques.

  19. The CMS Muon System Alignment

    CERN Document Server

    Martinez Ruiz-Del-Arbol, P

    2009-01-01

    The alignment of the muon system of CMS is performed using different techniques: photogrammetry measurements, optical alignment and alignment with tracks. For track-based alignment, several methods are employed, ranging from a hit and impact point (HIP) algorithm and a procedure exploiting chamber overlaps to a global fit method based on the Millepede approach. For start-up alignment as long as available integrated luminosity is still significantly limiting the size of the muon sample from collisions, cosmic muon and beam halo signatures play a very strong role. During the last commissioning runs in 2008 the first aligned geometries have been produced and validated with data. The CMS offline computing infrastructure has been used in order to perform improved reconstructions. We present the computational aspects related to the calculation of alignment constants at the CERN Analysis Facility (CAF), the production and population of databases and the validation and performance in the official reconstruction. Also...

  20. Flavour constraints on multi-Higgs-doublet models: Yukawa alignment

    CERN Document Server

    Pich, Antonio

    2010-01-01

    In multi-Higgs-doublet models, the alignment in flavour space of all Yukawa matrices coupling to a given right-handed fermion guarantees the absence of tree-level flavour-changing neutral couplings, while introducing new sources of CP violation. With N Higgs doublets (and no right-handed neutrinos) the Yukawa Lagrangian is characterized by the fermion masses, the CKM quark mixing matrix and 3(N-1) complex couplings. Quantum corrections break the alignment, generating a minimal-flavour-violation structure with flavour-blind phases. The aligned multi-Higgs-doublet models lead to a rich and viable phenomenology with an interesting hierarchy of flavour-changing neutral current effects, suppressing them in light-quark systems while allowing potentially relevant signals in heavy-quark transitions.

  1. Scheme Program Documentation Tools

    DEFF Research Database (Denmark)

    Nørmark, Kurt

    2004-01-01

    This paper describes and discusses two different Scheme documentation tools. The first is SchemeDoc, which is intended for documentation of the interfaces of Scheme libraries (APIs). The second is the Scheme Elucidator, which is for internal documentation of Scheme programs. Although the tools...... are separate and intended for different documentation purposes they are related to each other in several ways. Both tools are based on XML languages for tool setup and for documentation authoring. In addition, both tools rely on the LAML framework which---in a systematic way---makes an XML language available...

  2. CELT optics Alignment Procedure

    Science.gov (United States)

    Mast, Terry S.; Nelson, Jerry E.; Chanan, Gary A.; Noethe, Lothar

    2003-01-01

    The California Extremely Large Telescope (CELT) is a project to build a 30-meter diameter telescope for research in astronomy at visible and infrared wavelengths. The current optical design calls for a primary, secondary, and tertiary mirror with Ritchey-Chretién foci at two Nasmyth platforms. The primary mirror is a mosaic of 1080 actively-stabilized hexagonal segments. This paper summarizes a CELT report that describes a step-by-step procedure for aligning the many degrees of freedom of the CELT optics.

  3. Alignment of concerns

    DEFF Research Database (Denmark)

    Andersen, Tariq Osman; Bansler, Jørgen P.; Kensing, Finn;

    2014-01-01

    The emergence of patient-centered eHealth systems introduces new challenges, where patients come to play an increasingly important role. Realizing the promises requires an in-depth understanding of not only the technology, but also the needs of both clinicians and patients. However, insights from...... medical phenomenology bring forth how physicians and patients focus on different aspects of illness and that they often have starkly divergent concerns. This has important implications for the design of eHealth systems that seek to engage patients as active participants. We emphasize the crucial...... as a design rationale for successful eHealth, termed 'alignment of concerns'....

  4. Beam alignment system

    International Nuclear Information System (INIS)

    A patent is claimed for the invention of a beam alignment system. The aim of the invention is the obtention of an accurate monitoring of the beam position and direction. It is of great interest in the nuclear industry. The invention can be applied in an infrared laser beam for welding operations. An auxiliar radiation source is incorporated to the device. The system's configuration allows a simultaneous and separated utilisation of two beams. The description and the design of the proposed system are provided

  5. ATLAS Inner Detector Alignment

    CERN Document Server

    Bocci, A

    2008-01-01

    The ATLAS experiment is a multi-purpose particle detector that will study high-energy particle collisions produced by the Large Hadron Collider at CERN. In order to achieve its physics goals, the ATLAS tracking requires that the positions of the silicon detector elements have to be known to a precision better than 10 μm. Several track-based alignment algorithms have been developed for the Inner Detector. An extensive validation has been performed with simulated events and real data coming from the ATLAS. Results from such validation are reported in this paper.

  6. Automatic alignment of double optical paths in excimer laser amplifier

    Science.gov (United States)

    Wang, Dahui; Zhao, Xueqing; Hua, Hengqi; Zhang, Yongsheng; Hu, Yun; Yi, Aiping; Zhao, Jun

    2013-05-01

    A kind of beam automatic alignment method used for double paths amplification in the electron pumped excimer laser system is demonstrated. In this way, the beams from the amplifiers can be transferred along the designated direction and accordingly irradiate on the target with high stabilization and accuracy. However, owing to nonexistence of natural alignment references in excimer laser amplifiers, two cross-hairs structure is used to align the beams. Here, one crosshair put into the input beam is regarded as the near-field reference while the other put into output beam is regarded as the far-field reference. The two cross-hairs are transmitted onto Charge Coupled Devices (CCD) by image-relaying structures separately. The errors between intersection points of two cross-talk images and centroid coordinates of actual beam are recorded automatically and sent to closed loop feedback control mechanism. Negative feedback keeps running until preset accuracy is reached. On the basis of above-mentioned design, the alignment optical path is built and the software is compiled, whereafter the experiment of double paths automatic alignment in electron pumped excimer laser amplifier is carried through. Meanwhile, the related influencing factors and the alignment precision are analyzed. Experimental results indicate that the alignment system can achieve the aiming direction of automatic aligning beams in short time. The analysis shows that the accuracy of alignment system is 0.63μrad and the beam maximum restoration error is 13.75μm. Furthermore, the bigger distance between the two cross-hairs, the higher precision of the system is. Therefore, the automatic alignment system has been used in angular multiplexing excimer Main Oscillation Power Amplification (MOPA) system and can satisfy the requirement of beam alignment precision on the whole.

  7. Fault-Tolerant Visual Secret Sharing Schemes without Pixel Expansion

    OpenAIRE

    Justie Su-Tzu Juan; Yung-Chang Chen; Song Guo

    2016-01-01

    Visual cryptography encrypts a secret image into two meaningless random images, called shares, such that it can be decrypted by human vision without any calculations. However, there would be problems in alignment when these two shares are staked by hand in practice. Therefore, this paper presents the fault-tolerant schemes of stacking two shares that are acquired from secret image encryption without pixel expansion. The main idea of these schemes is to combine several pixels as a unit and the...

  8. An asymptotic preserving scheme for strongly anisotropic elliptic problems

    OpenAIRE

    Degond, Pierre; Deluzet, Fabrice; Negulescu, Claudia

    2009-01-01

    21 pages In this article we introduce an asymptotic preserving scheme designed to compute the solution of a two dimensional elliptic equation presenting large anisotropies. We focus on an anisotropy aligned with one direction, the dominant part of the elliptic operator being supplemented with Neumann boundary conditions. A new scheme is introduced which allows an accurate resolution of this elliptic equation for an arbitrary anisotropy ratio.

  9. Ferromagnetic spin alignment in head-to-tail coupled oligo(1, 4-phenyleneethynylene)s and Oligo(1,4-phenylenevinylene)s bearing pendant p-phenylenediamine radical cations

    Science.gov (United States)

    van Meurs PJ; Janssen

    2000-09-01

    The intramolecular and long-range ferromagnetic coupling between p-phenylenediamine radical cations in head-to-tail coupled oligo(1, 4-phenyleneethynylene)s and oligo(1,4-phenylenvinylene)s between neighbors and next-nearest neighbors is described. UV/vis/near-IR experiments show that the radical cations are localized in the pendant p-phenylenediamine units of the conjugated oligomers. The ESR spectra of these oligo(1,4-phenyleneethynylene) and oligo(1, 4-phenylenvinylene) di(radical cation)s are consistent with those of a triplet state. A linear behavior is observed for the doubly integrated ESR intensity of the DeltaM(s) = +/-1 and DeltaM(s) = +/-2 signals with the inverse temperature (I approximately 1/T), consistent with Curie's law. This behavior indicates a triplet ground-state diradical with a large triplet-singlet energy gap or possibly a degeneracy of singlet and triplet states. PMID:10970315

  10. Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).

    Science.gov (United States)

    Martin, Andrew C R

    2014-01-01

    The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and 'dotifying' repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.

  11. Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).

    Science.gov (United States)

    Martin, Andrew C R

    2014-01-01

    The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and 'dotifying' repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/. PMID:25653836

  12. Computing alignment plots efficiently

    CERN Document Server

    Krusche, Peter

    2009-01-01

    Dot plots are a standard method for local comparison of biological sequences. In a dot plot, a substring to substring distance is computed for all pairs of fixed-size windows in the input strings. Commonly, the Hamming distance is used since it can be computed in linear time. However, the Hamming distance is a rather crude measure of string similarity, and using an alignment-based edit distance can greatly improve the sensitivity of the dot plot method. In this paper, we show how to compute alignment plots of the latter type efficiently. Given two strings of length m and n and a window size w, this problem consists in computing the edit distance between all pairs of substrings of length w, one from each input string. The problem can be solved by repeated application of the standard dynamic programming algorithm in time O(mnw^2). This paper gives an improved data-parallel algorithm, running in time $O(mnw/\\gamma/p)$ using vector operations that work on $\\gamma$ values in parallel and $p$ processors. We show ex...

  13. All about alignment

    CERN Multimedia

    2006-01-01

    The ALICE absorbers, iron wall and superstructure have been installed with great precision. The ALICE front absorber, positioned in the centre of the detector, has been installed and aligned. Weighing more than 400 tonnes, the ALICE absorbers and the surrounding support structures have been installed and aligned with a precision of 1-2 mm, hardly an easy task but a very important one. The ALICE absorbers are made of three parts: the front absorber, a 35-tonne cone-shaped structure, and two small-angle absorbers, long straight cylinder sections weighing 18 and 40 tonnes. The three pieces lined up have a total length of about 17 m. In addition to these, ALICE technicians have installed a 300-tonne iron filter wall made of blocks that fit together like large Lego pieces and a surrounding metal support structure to hold the tracking and trigger chambers. The absorbers house the vacuum chamber and are also the reference surface for the positioning of the tracking and trigger chambers. For this reason, the ab...

  14. Conditional alignment random fields for multiple motion sequence alignment.

    Science.gov (United States)

    Kim, Minyoung

    2013-11-01

    We consider the multiple time-series alignment problem, typically focusing on the task of synchronizing multiple motion videos of the same kind of human activity. Finding an optimal global alignment of multiple sequences is infeasible, while there have been several approximate solutions, including iterative pairwise warping algorithms and variants of hidden Markov models. In this paper, we propose a novel probabilistic model that represents the conditional densities of the latent target sequences which are aligned with the given observed sequences through the hidden alignment variables. By imposing certain constraints on the target sequences at the learning stage, we have a sensible model for multiple alignments that can be learned very efficiently by the EM algorithm. Compared to existing methods, our approach yields more accurate alignment while being more robust to local optima and initial configurations. We demonstrate its efficacy on both synthetic and real-world motion videos including facial emotions and human activities. PMID:24051737

  15. Overcoming low-alignment signal contrast induced alignment failure by alignment signal enhancement

    Science.gov (United States)

    Lee, Byeong Soo; Kim, Young Ha; Hwang, Hyunwoo; Lee, Jeongjin; Kong, Jeong Heung; Kang, Young Seog; Paarhuis, Bart; Kok, Haico; de Graaf, Roelof; Weichselbaum, Stefan; Droste, Richard; Mason, Christopher; Aarts, Igor; de Boeij, Wim P.

    2016-03-01

    Overlay is one of the key factors which enables optical lithography extension to 1X node DRAM manufacturing. It is natural that accurate wafer alignment is a prerequisite for good device overlay. However, alignment failures or misalignments are commonly observed in a fab. There are many factors which could induce alignment problems. Low alignment signal contrast is one of the main issues. Alignment signal contrast can be degraded by opaque stack materials or by alignment mark degradation due to processes like CMP. This issue can be compounded by mark sub-segmentation from design rules in combination with double or quadruple spacer process. Alignment signal contrast can be improved by applying new material or process optimization, which sometimes lead to the addition of another process-step with higher costs. If we can amplify the signal components containing the position information and reduce other unwanted signal and background contributions then we can improve alignment performance without process change. In this paper we use ASML's new alignment sensor (as was introduced and released on the NXT:1980Di) and sample wafers with special stacks which can induce poor alignment signal to demonstrate alignment and overlay improvement.

  16. Fuzzy adaptive strong tracking scaled unscented Kalman filter for initial alignment of large misalignment angles

    Science.gov (United States)

    Li, Jing; Song, Ningfang; Yang, Gongliu; Jiang, Rui

    2016-07-01

    In the initial alignment process of strapdown inertial navigation system (SINS), large misalignment angles always bring nonlinear problem, which can usually be processed using the scaled unscented Kalman filter (SUKF). In this paper, the problem of large misalignment angles in SINS alignment is further investigated, and the strong tracking scaled unscented Kalman filter (STSUKF) is proposed with fixed parameters to improve convergence speed, while these parameters are artificially constructed and uncertain in real application. To further improve the alignment stability and reduce the parameters selection, this paper proposes a fuzzy adaptive strategy combined with STSUKF (FUZZY-STSUKF). As a result, initial alignment scheme of large misalignment angles based on FUZZY-STSUKF is designed and verified by simulations and turntable experiment. The results show that the scheme improves the accuracy and convergence speed of SINS initial alignment compared with those based on SUKF and STSUKF.

  17. Fuzzy adaptive strong tracking scaled unscented Kalman filter for initial alignment of large misalignment angles.

    Science.gov (United States)

    Li, Jing; Song, Ningfang; Yang, Gongliu; Jiang, Rui

    2016-07-01

    In the initial alignment process of strapdown inertial navigation system (SINS), large misalignment angles always bring nonlinear problem, which can usually be processed using the scaled unscented Kalman filter (SUKF). In this paper, the problem of large misalignment angles in SINS alignment is further investigated, and the strong tracking scaled unscented Kalman filter (STSUKF) is proposed with fixed parameters to improve convergence speed, while these parameters are artificially constructed and uncertain in real application. To further improve the alignment stability and reduce the parameters selection, this paper proposes a fuzzy adaptive strategy combined with STSUKF (FUZZY-STSUKF). As a result, initial alignment scheme of large misalignment angles based on FUZZY-STSUKF is designed and verified by simulations and turntable experiment. The results show that the scheme improves the accuracy and convergence speed of SINS initial alignment compared with those based on SUKF and STSUKF. PMID:27475606

  18. Detailed source term estimation of the atmospheric release for the Fukushima Daiichi Nuclear Power Station accident by coupling simulations of atmospheric dispersion model with improved deposition scheme and oceanic dispersion model

    Directory of Open Access Journals (Sweden)

    G. Katata

    2014-06-01

    Full Text Available Temporal variations in the amount of radionuclides released into the atmosphere during the Fukushima Dai-ichi Nuclear Power Station (FNPS1 accident and their atmospheric and marine dispersion are essential to evaluate the environmental impacts and resultant radiological doses to the public. In this paper, we estimate a detailed time trend of atmospheric releases during the accident by combining environmental monitoring data with atmospheric model simulations from WSPEEDI-II (Worldwide version of System for Prediction of Environmental Emergency Dose Information, and simulations from the oceanic dispersion model SEA-GEARN-FDM, both developed by the authors. A sophisticated deposition scheme, which deals with dry and fogwater depositions, cloud condensation nuclei (CCN activation and subsequent wet scavenging due to mixed-phase cloud microphysics (in-cloud scavenging for radioactive iodine gas (I2 and CH3I and other particles (CsI, Cs, and Te, was incorporated into WSPEEDI-II to improve the surface deposition calculations. The fallout to the ocean surface calculated by WSPEEDI-II was used as input data for the SEA-GEARN-FDM calculations. Reverse and inverse source-term estimation methods based on coupling the simulations from both models was adopted using air dose rates and concentrations, and sea surface concentrations. The results revealed that the major releases of radionuclides due to FNPS1 accident occurred in the following periods during March 2011: the afternoon of 12 March due to the wet venting and hydrogen explosion at Unit 1, the morning of 13 March after the venting event at Unit 3, midnight of 14 March when the SRV (Safely Relief Valve at Unit 2 was opened three times, the morning and night of 15 March, and the morning of 16 March. According to the simulation results, the highest radioactive contamination areas around FNPS1 were created from 15 to 16 March by complicated interactions among rainfall, plume movements, and the temporal

  19. Detailed source term estimation of the atmospheric release for the Fukushima Daiichi Nuclear Power Station accident by coupling simulations of atmospheric dispersion model with improved deposition scheme and oceanic dispersion model

    Science.gov (United States)

    Katata, G.; Chino, M.; Kobayashi, T.; Terada, H.; Ota, M.; Nagai, H.; Kajino, M.; Draxler, R.; Hort, M. C.; Malo, A.; Torii, T.; Sanada, Y.

    2014-06-01

    Temporal variations in the amount of radionuclides released into the atmosphere during the Fukushima Dai-ichi Nuclear Power Station (FNPS1) accident and their atmospheric and marine dispersion are essential to evaluate the environmental impacts and resultant radiological doses to the public. In this paper, we estimate a detailed time trend of atmospheric releases during the accident by combining environmental monitoring data with atmospheric model simulations from WSPEEDI-II (Worldwide version of System for Prediction of Environmental Emergency Dose Information), and simulations from the oceanic dispersion model SEA-GEARN-FDM, both developed by the authors. A sophisticated deposition scheme, which deals with dry and fogwater depositions, cloud condensation nuclei (CCN) activation and subsequent wet scavenging due to mixed-phase cloud microphysics (in-cloud scavenging) for radioactive iodine gas (I2 and CH3I) and other particles (CsI, Cs, and Te), was incorporated into WSPEEDI-II to improve the surface deposition calculations. The fallout to the ocean surface calculated by WSPEEDI-II was used as input data for the SEA-GEARN-FDM calculations. Reverse and inverse source-term estimation methods based on coupling the simulations from both models was adopted using air dose rates and concentrations, and sea surface concentrations. The results revealed that the major releases of radionuclides due to FNPS1 accident occurred in the following periods during March 2011: the afternoon of 12 March due to the wet venting and hydrogen explosion at Unit 1, the morning of 13 March after the venting event at Unit 3, midnight of 14 March when the SRV (Safely Relief Valve) at Unit 2 was opened three times, the morning and night of 15 March, and the morning of 16 March. According to the simulation results, the highest radioactive contamination areas around FNPS1 were created from 15 to 16 March by complicated interactions among rainfall, plume movements, and the temporal variation of

  20. Pareto optimal pairwise sequence alignment.

    Science.gov (United States)

    DeRonne, Kevin W; Karypis, George

    2013-01-01

    Sequence alignment using evolutionary profiles is a commonly employed tool when investigating a protein. Many profile-profile scoring functions have been developed for use in such alignments, but there has not yet been a comprehensive study of Pareto optimal pairwise alignments for combining multiple such functions. We show that the problem of generating Pareto optimal pairwise alignments has an optimal substructure property, and develop an efficient algorithm for generating Pareto optimal frontiers of pairwise alignments. All possible sets of two, three, and four profile scoring functions are used from a pool of 11 functions and applied to 588 pairs of proteins in the ce_ref data set. The performance of the best objective combinations on ce_ref is also evaluated on an independent set of 913 protein pairs extracted from the BAliBASE RV11 data set. Our dynamic-programming-based heuristic approach produces approximated Pareto optimal frontiers of pairwise alignments that contain comparable alignments to those on the exact frontier, but on average in less than 1/58th the time in the case of four objectives. Our results show that the Pareto frontiers contain alignments whose quality is better than the alignments obtained by single objectives. However, the task of identifying a single high-quality alignment among those in the Pareto frontier remains challenging.

  1. Spontaneous CP violation in the 2HDM: physical conditions and the alignment limit

    CERN Document Server

    Grzadkowski, B; Osland, P

    2016-01-01

    For the general Two-Higgs-Doublet model, we present conditions for having spontaneous CP violation, in terms of physical masses and couplings. These relations involve the charged-Higgs mass, its cubic couplings with neutral scalars and quartic coupling, and become particularly simple in the alignment limit. In the simplified model with softly broken $Z_2$ symmetry, some deviation from alignment is required for spontaneous CP violation to be present.

  2. Update on the Pyramid Scheme

    CERN Document Server

    Banks, Tom

    2012-01-01

    We summarize recent work in which we attempt to make a consistent model of LHC physics, from the Pyramid Scheme. The models share much with the NMSSM, in particular, enhanced tree level contributions to the Higgs mass and a preference for small tan {\\beta}. There are 3 different singlet fields, and a new strongly coupled gauge theory, so the constraints of perturbative unification are quite different. We outline our general approach to the model, which contains a Kahler potential for three of the low energy fields, which is hard to calculate. Detailed calculations, based on approximations to the Kahler potential, will be presented in a future publication.

  3. Convertible Proxy Signcryption Scheme

    Institute of Scientific and Technical Information of China (English)

    李继国; 李建中; 曹珍富; 张亦辰

    2004-01-01

    In 1996, Mambo et al introduced the concept of proxy signature. However, proxy signature can only provide the delegated authenticity and cannot provide confidentiality. Recently, Gamage et al and Chan and Wei proposed different proxy signcryption schemes respectively, which extended the concept of proxy signature.However, only the specified receiver can decrypt and verify the validity of proxy signcryption in their schemes.To protect the receiver' s benefit in case of a later dispute, Wu and Hsu proposed a convertible authenticated encryption scheme, which carn enable the receiver to convert signature into an ordinary one that can be verified by anyone. Based on Wu and Hsu' s scheme and improved Kim' s scheme, we propose a convertible proxy signcryption scheme. The security of the proposed scheme is based on the intractability of reversing the one-way hash function and solving the discrete logarithm problem. The proposed scheme can satisfy all properties of strong proxy signature and withstand the public key substitution attack and does not use secure channel. In addition, the proposed scheme can be extended to convertible threshold proxy signcryption scheme.

  4. Coupled transverse motion

    Energy Technology Data Exchange (ETDEWEB)

    Teng, L.C.

    1989-01-01

    The magnetic field in an accelerator or a storage ring is usually so designed that the horizontal (x) and the vertical (y) motions of an ion are uncoupled. However, because of imperfections in construction and alignment, some small coupling is unavoidable. In this lecture, we discuss in a general way what is known about the behaviors of coupled motions in two degrees-of-freedom. 11 refs., 6 figs.

  5. Robust Scheme for Long-Distance Teleportation of an Unknown Atomic State

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A scheme is presented for the long-distance teleportation of an unknown atomic state between two separated cavities. The scheme is based on the Raman coupling and cavity decay. In the scheme, the effective atom-cavity coupling strength is much smaller than the cavity decay rate and thus cavities of high quality factor are unnecesssary.

  6. Open Microwave Cavity for use in a Purcell Enhancement Cooling Scheme

    CERN Document Server

    Evetts, N; Bizzotto, D; Longuevergne, D; Hardy, W N

    2016-01-01

    A microwave cavity is described which can be used to cool lepton plasmas for potential use in synthesis of antihydrogen. The cooling scheme is an incarnation of the Purcell Effect: when plasmas are coupled to a microwave cavity, the plasma cooling rate is resonantly enhanced through increased spontaneous emission of cyclotron radiation. The cavity forms a three electrode section of a Penning-Malmberg trap and has a bulged cylindrical geometry with open ends aligned with the magnetic trapping axis. This allows plasmas to be injected and removed from the cavity without the need for moving parts while maintaining high quality factors for resonant modes. The cavity includes unique surface preparations for adjusting the cavity quality factor and achieving anti-static shielding using thin layers of nichrome and colloidal graphite respectively. Geometric design considerations for a cavity with strong cooling power and low equilibrium plasma temperatures are discussed. Cavities of this weak-bulge design will be appli...

  7. A generalized scheme for designing multistable continuous dynamical systems

    Indian Academy of Sciences (India)

    PAL SANTINATH; SAHOO BANSHIDHAR; PORIA SWARUP

    2016-06-01

    In this paper, a generalized scheme is proposed for designing multistable continuous dynamical systems. The scheme is based on the concept of partial synchronization of states and the concept of constants of motion. The most important observation is that by coupling two mdimensional dynamical systems, multistable nature can be obtained if i number of variables of the two systems are completely synchronized and j number of variables keep a constant difference between them i.e., their differences are constants of motion, where $i+j = m$ and $1 \\le i, j \\le m−1$. The proposed scheme is illustrated by taking coupled Lorenz systems and coupled chaotic Lorenzlike systems. According to the scheme, two coupled systems reduce to single modified system withsome initial condition-dependent parameters. Time evolution plots, phase diagrams, variation of maximum Lyapunov exponent and bifurcation diagrams of the systems are presented to show the multistable nature of the coupled systems.

  8. Onorbit IMU alignment error budget

    Science.gov (United States)

    Corson, R. W.

    1980-01-01

    The Star Tracker, Crew Optical Alignment Sight (COAS), and Inertial Measurement Unit (IMU) from a complex navigation system with a multitude of error sources were combined. A complete list of the system errors is presented. The errors were combined in a rational way to yield an estimate of the IMU alignment accuracy for STS-1. The expected standard deviation in the IMU alignment error for STS-1 type alignments was determined to be 72 arc seconds per axis for star tracker alignments and 188 arc seconds per axis for COAS alignments. These estimates are based on current knowledge of the star tracker, COAS, IMU, and navigation base error specifications, and were partially verified by preliminary Monte Carlo analysis.

  9. Dust alignment in astrophysical environments

    Science.gov (United States)

    Lazarian, Alex; Thiem Hoang, Chi

    Dust is known to be aligned in interstellar medium and the arising polarization is extensively used to trace magnetic fields. What process aligns dust grains was one of the most long-standing problems of astrophysics in spite of the persistent efforts to solve it. For years the Davis-Greenstein paramagnetic alignment was the primary candidate for explaining grain alignment. However, the situation is different now and the most promising mechanism is associated with radiative torques (RATs) acting on irregular grains. I shall present the analytical theory of RAT alignment, discuss the observational tests that support this theory. I shall also discuss in what situations we expect to see the dominance of paramagnetic alignment.

  10. Nuclear reactor internals alignment configuration

    Science.gov (United States)

    Gilmore, Charles B.; Singleton, Norman R.

    2009-11-10

    An alignment system that employs jacking block assemblies and alignment posts around the periphery of the top plate of a nuclear reactor lower internals core shroud to align an upper core plate with the lower internals and the core shroud with the core barrel. The distal ends of the alignment posts are chamfered and are closely received within notches machined in the upper core plate at spaced locations around the outer circumference of the upper core plate. The jacking block assemblies are used to center the core shroud in the core barrel and the alignment posts assure the proper orientation of the upper core plate. The alignment posts may alternately be formed in the upper core plate and the notches may be formed in top plate.

  11. Stateless Transitive Signature Schemes

    Institute of Scientific and Technical Information of China (English)

    MA Chun-guang; CAI Man-chun; YANG Yi-xian

    2004-01-01

    A new practical method is introduced to transform the stateful transitive signature scheme to stateless one without the loss of security. According to the approach, two concrete stateless transitive signature schemes based on Factoring and RSA are presented respectively. Under the assumption of the hardness of factoring and one-more- RSA-inversion problem, both two schemes are secure under the adaptive chosen-message attacks in random oracle model.

  12. Aligning Ambition and Incentives

    DEFF Research Database (Denmark)

    Koch, Alexander; Peyrache, Eloïc

    Labor turnover creates longer term career concerns incentives that motivate employees in addition to the short term monetary incentives provided by the current employer. We analyze how these incentives interact and derive implications for the design of incentive contracts and organizational choic...... rationales for such schemes are absent. Linking the structure of contracts to organizational design, we show that it can be optimal for the principal to adopt an opaque organization where performance is not verifiable, despite the constraints that this imposes on contracts....

  13. Aligning ambition and incentives

    DEFF Research Database (Denmark)

    Koch, Alexander; Peyrache, Eloïc

    2011-01-01

    Labor turnover creates longer term career concerns incentives that motivate employees in addition to the short term monetary incentives provided by the current employer. We analyze how these incentives interact, and derive implications for the design of incentive contracts and organizational choi...... rationales for such schemes are absent. Linking the structure of contracts to organizational design, we show that it can be optimal for the principal to adopt an opaque organization where performance is not verifiable, despite the constraints that this imposes on contracts....

  14. The alignment strategy of HADES

    Energy Technology Data Exchange (ETDEWEB)

    Pechenova, O., E-mail: O.Pechenova@gsi.de [Institut für Kernphysik, Johann Wolfgang Goethe-Universität, 60438 Frankfurt (Germany); Pechenov, V. [GSI Helmholtzzentrum für Schwerionenforschung, 64291 Darmstadt (Germany); Galatyuk, T. [GSI Helmholtzzentrum für Schwerionenforschung, 64291 Darmstadt (Germany); Technische Universität Darmstadt, D-64289 Darmstadt (Germany); Hennino, T. [Institut de Physique Nucléaire (UMR 8608), CNRS/IN2P3 – Université Paris Sud, F-91406 Orsay Cedex (France); Holzmann, R. [GSI Helmholtzzentrum für Schwerionenforschung, 64291 Darmstadt (Germany); Kornakov, G. [Departamento de Física de Partículas, Univ. de Santiago de Compostela, 15706 Santiago de Compostela (Spain); Technische Universität Darmstadt, D-64289 Darmstadt (Germany); Markert, J.; Müntz, C. [Institut für Kernphysik, Johann Wolfgang Goethe-Universität, 60438 Frankfurt (Germany); Salabura, P. [Smoluchowski Institute of Physics, Jagiellonian University of Kraków, 30-059 Kraków (Poland); Schmah, A. [Lawrence Berkeley National Laboratory, Berkeley (United States); Schwab, E. [GSI Helmholtzzentrum für Schwerionenforschung, 64291 Darmstadt (Germany); Stroth, J. [Institut für Kernphysik, Johann Wolfgang Goethe-Universität, 60438 Frankfurt (Germany); GSI Helmholtzzentrum für Schwerionenforschung, 64291 Darmstadt (Germany)

    2015-06-11

    The global as well as intrinsic alignment of any spectrometer impacts directly on its performance and the quality of the achievable physics results. An overview of the current alignment procedure of the DiElectron Spectrometer HADES is presented with an emphasis on its main features and its accuracy. The sequence of all steps and procedures is given, including details on photogrammetric and track-based alignment.

  15. GraphAlignment: Bayesian pairwise alignment of biological networks

    Directory of Open Access Journals (Sweden)

    Kolář Michal

    2012-11-01

    Full Text Available Abstract Background With increased experimental availability and accuracy of bio-molecular networks, tools for their comparative and evolutionary analysis are needed. A key component for such studies is the alignment of networks. Results We introduce the Bioconductor package GraphAlignment for pairwise alignment of bio-molecular networks. The alignment incorporates information both from network vertices and network edges and is based on an explicit evolutionary model, allowing inference of all scoring parameters directly from empirical data. We compare the performance of our algorithm to an alternative algorithm, Græmlin 2.0. On simulated data, GraphAlignment outperforms Græmlin 2.0 in several benchmarks except for computational complexity. When there is little or no noise in the data, GraphAlignment is slower than Græmlin 2.0. It is faster than Græmlin 2.0 when processing noisy data containing spurious vertex associations. Its typical case complexity grows approximately as O(N2.6. On empirical bacterial protein-protein interaction networks (PIN and gene co-expression networks, GraphAlignment outperforms Græmlin 2.0 with respect to coverage and specificity, albeit by a small margin. On large eukaryotic PIN, Græmlin 2.0 outperforms GraphAlignment. Conclusions The GraphAlignment algorithm is robust to spurious vertex associations, correctly resolves paralogs, and shows very good performance in identification of homologous vertices defined by high vertex and/or interaction similarity. The simplicity and generality of GraphAlignment edge scoring makes the algorithm an appropriate choice for global alignment of networks.

  16. Chaotic coupling synchronization of hyperchaotic oscillators

    Institute of Scientific and Technical Information of China (English)

    Zou Yan-Li; Zhu Jie; Chen Guan-Rong

    2005-01-01

    In this paper, two kinds of chaotic coupling synchronization schemes are presented. The synchronizability of the coupled hyperchaotic oscillators is proved mathematically and the numerical simulation is also carried out. The numerical calculation of the largest conditional Lyapunov exponent shows that in a given range of coupling strengths,chaotic-coupling synchronization is quicker than the typical continuous-coupling synchronization.

  17. Fault-Tolerant Visual Secret Sharing Schemes without Pixel Expansion

    Directory of Open Access Journals (Sweden)

    Justie Su-Tzu Juan

    2016-01-01

    Full Text Available Visual cryptography encrypts a secret image into two meaningless random images, called shares, such that it can be decrypted by human vision without any calculations. However, there would be problems in alignment when these two shares are staked by hand in practice. Therefore, this paper presents the fault-tolerant schemes of stacking two shares that are acquired from secret image encryption without pixel expansion. The main idea of these schemes is to combine several pixels as a unit and then to encrypt each unit into a specific combination of pixels. Both theoretical analysis and simulation results demonstrate the effectiveness and practicality of the proposed schemes.

  18. Constrained-DFT method for accurate energy-level alignment of metal/molecule interfaces

    KAUST Repository

    Souza, A. M.

    2013-10-07

    We present a computational scheme for extracting the energy-level alignment of a metal/molecule interface, based on constrained density functional theory and local exchange and correlation functionals. The method, applied here to benzene on Li(100), allows us to evaluate charge-transfer energies, as well as the spatial distribution of the image charge induced on the metal surface. We systematically study the energies for charge transfer from the molecule to the substrate as function of the molecule-substrate distance, and investigate the effects arising from image-charge confinement and local charge neutrality violation. For benzene on Li(100) we find that the image-charge plane is located at about 1.8 Å above the Li surface, and that our calculated charge-transfer energies compare perfectly with those obtained with a classical electrostatic model having the image plane located at the same position. The methodology outlined here can be applied to study any metal/organic interface in the weak coupling limit at the computational cost of a total energy calculation. Most importantly, as the scheme is based on total energies and not on correcting the Kohn-Sham quasiparticle spectrum, accurate results can be obtained with local/semilocal exchange and correlation functionals. This enables a systematic approach to convergence.

  19. Pyro-Align: Sample-Align based Multiple Alignment system for Pyrosequencing Reads of Large Number

    CERN Document Server

    Saeed, Fahad

    2009-01-01

    Pyro-Align is a multiple alignment program specifically designed for pyrosequencing reads of huge number. Multiple sequence alignment is shown to be NP-hard and heuristics are designed for approximate solutions. Multiple sequence alignment of pyrosequenceing reads is complex mainly because of 2 factors. One being the huge number of reads, making the use of traditional heuristics,that scale very poorly for large number, unsuitable. The second reason is that the alignment cannot be performed arbitrarily, because the position of the reads with respect to the original genome is important and has to be taken into account.In this report we present a short description of the multiple alignment system for pyrosequencing reads.

  20. Multiresolution signal decomposition schemes

    NARCIS (Netherlands)

    Goutsias, J.; Heijmans, H.J.A.M.

    1998-01-01

    [PNA-R9810] Interest in multiresolution techniques for signal processing and analysis is increasing steadily. An important instance of such a technique is the so-called pyramid decomposition scheme. This report proposes a general axiomatic pyramid decomposition scheme for signal analysis and synthes

  1. On the Alignment of Shapes Represented by Fourier Descriptors

    DEFF Research Database (Denmark)

    Sjöstrand, Karl; Ericsson, Anders; Larsen, Rasmus

    2006-01-01

    consist of continuous outlines of structures, where no information of correspondence between samples exist. In this article, we discuss an alignment method that works directly with the functional representation of Fourier descriptors, and that is optimal in a least-squares sense. With corresponding...... starting points, the alignment of one shape onto another consists of a single expression. If the starting points are arbitrary, we present a simple iterative scheme to bring a set of shapes into correspondence. Results are given for three different data sets; 62 outlines of the corpus callosum brain...... structure, 61 outlines of the brain ventricles, and 50 outlines of the right lung. The results show that even though starting points, translations, rotations and scales have been randomized, the alignment succeeds in all cases. As an application of the proposed method, we show how high-quality shape models...

  2. Succesful labelling schemes

    DEFF Research Database (Denmark)

    Juhl, Hans Jørn; Stacey, Julia

    2001-01-01

    labelling schemes. Mass communication such as TV commercials will have very different impact on each of the four segments. It might be possible to increase the knowledge of 'the labelling blind' from 52% to 75%, but the use of the label would only rise from 16% to 18%. The awareness percentage of 'the...... to carry out a campaign targeted at this segment. The awareness percentage is already 92 % and 67% of the respondents believe they know the meaning of the scheme. But it stands to reason to study whether the respondents actually know what the labelling scheme stands for or if they just think they do....... If there is discrepancy between their perceptions of the contents of the schemes, this might be the reason why the scheme is not observed when they shop....

  3. Vacuum Alignment with more Flavors

    DEFF Research Database (Denmark)

    Ryttov, Thomas

    2014-01-01

    We study the alignment of the vacuum in gauge theories with $N_f$ Dirac fermions transforming according to a complex representation of the gauge group. The alignment of the vacuum is produced by adding a small mass perturbation to the theory. We study in detail the $N_f=2,3$ and $4$ case. For $N...

  4. CATO: The Clone Alignment Tool.

    Directory of Open Access Journals (Sweden)

    Peter V Henstock

    Full Text Available High-throughput cloning efforts produce large numbers of sequences that need to be aligned, edited, compared with reference sequences, and organized as files and selected clones. Different pieces of software are typically required to perform each of these tasks. We have designed a single piece of software, CATO, the Clone Alignment Tool, that allows a user to align, evaluate, edit, and select clone sequences based on comparisons to reference sequences. The input and output are designed to be compatible with standard data formats, and thus suitable for integration into a clone processing pipeline. CATO provides both sequence alignment and visualizations to facilitate the analysis of cloning experiments. The alignment algorithm matches each of the relevant candidate sequences against each reference sequence. The visualization portion displays three levels of matching: 1 a top-level summary of the top candidate sequences aligned to each reference sequence, 2 a focused alignment view with the nucleotides of matched sequences displayed against one reference sequence, and 3 a pair-wise alignment of a single reference and candidate sequence pair. Users can select the minimum matching criteria for valid clones, edit or swap reference sequences, and export the results to a summary file as part of the high-throughput cloning workflow.

  5. Lexical alignment in triadic communication

    Directory of Open Access Journals (Sweden)

    Anouschka eFoltz

    2015-02-01

    Full Text Available Lexical alignment refers to the adoption of one’s interlocutor’s lexical items. Accounts of the mechanisms underlying such lexical alignment differ (among other aspects in the role assigned to addressee-centered behavior. In this study, we used a triadic communicative situation to test which factors may modulate the extent to which participants’ lexical alignment reflects addressee-centered behavior. Pairs of naïve participants played a picture matching game and received information about the order in which pictures were to be matched from a voice over headphones. On critical trials, participants did or did not hear a name for the picture to be matched next over headphones. Importantly, when the voice over headphones provided a name, it did not match the name that the interlocutor had previously used to describe the object. Participants overwhelmingly used the word that the voice over headphones provided. This result points to non-addressee-centered behavior and is discussed in terms of disrupting alignment with the interlocutor as well as in terms of establishing alignment with the voice over headphones. In addition, the type of picture (line drawing vs. tangram shape independently modulated lexical alignment, such that participants showed more lexical alignment to their interlocutor for (more ambiguous tangram shapes compared to line drawings. Overall, the results point to a rather large role for non-addressee-centered behavior during lexical alignment.

  6. Effective Electrocardiogram Steganography Based on Coefficient Alignment.

    Science.gov (United States)

    Yang, Ching-Yu; Wang, Wen-Fong

    2016-03-01

    This study presents two types of data hiding methods based on coefficient alignment for electrocardiogram (ECG) signals, namely, lossy and reversible ECG steganographys. The lossy method is divided into high-quality and high-capacity ECG steganography, both of which are capable of hiding confidential patient data in ECG signals. The reversible data hiding method can not only hide secret messages but also completely restore the original ECG signal after bit extraction. Simulations confirmed that the perceived quality generated by the lossy ECG steganography methods was good, while hiding capacity was acceptable. In addition, these methods have a certain degree of robustness, which is rare in conventional ECG stegangraphy schemes. Moreover, the proposed reversible ECG steganography method can not only successfully extract hidden messages but also completely recover the original ECG data.

  7. Alignment of flexible protein structures.

    Science.gov (United States)

    Shatsky, M; Fligelman, Z Y; Nussinov, R; Wolfson, H J

    2000-01-01

    We present two algorithms which align flexible protein structures. Both apply efficient structural pattern detection and graph theoretic techniques. The FlexProt algorithm simultaneously detects the hinge regions and aligns the rigid subparts of the molecules. It does it by efficiently detecting maximal congruent rigid fragments in both molecules and calculating their optimal arrangement which does not violate the protein sequence order. The FlexMol algorithm is sequence order independent, yet requires as input the hypothesized hinge positions. Due its sequence order independence it can also be applied to protein-protein interface matching and drug molecule alignment. It aligns the rigid parts of the molecule using the Geometric Hashing method and calculates optimal connectivity among these parts by graph-theoretic techniques. Both algorithms are highly efficient even compared with rigid structure alignment algorithms. Typical running times on a standard desktop PC (400 MHz) are about 7 seconds for FlexProt and about 1 minute for FlexMol.

  8. Alignments in the nobelium isotopes

    Institute of Scientific and Technical Information of China (English)

    ZHENG Shi-Zie; XU Fu-Rong; YUAN Cen-Xi; QI Chong

    2009-01-01

    Total-Routhian-Surface calculations have been performed to investigate the deformation and align-ment properties of the No isotopes. It is found that normal deformed and superdeformed states in these nuclei can coexist at low excitation energies. In neutron-deficient No isotopes, the superdeformed shapes can even become the ground states. Moreover, we plotted the kinematic moments of inertia of the No isotopes, which follow very nicely available experimental data. It is noted that, as the rotational frequency increases, align-ments develop at hω=0.2-0.3 MeV. Our calculations show that the occupation of the vj orbital plays an important role in the alignments of the No isotopes.

  9. The CMS Silicon Tracker Alignment

    CERN Document Server

    Castello, R

    2008-01-01

    The alignment of the Strip and Pixel Tracker of the Compact Muon Solenoid experiment, with its large number of independent silicon sensors and its excellent spatial resolution, is a complex and challenging task. Besides high precision mounting, survey measurements and the Laser Alignment System, track-based alignment is needed to reach the envisaged precision.\\\\ Three different algorithms for track-based alignment were successfully tested on a sample of cosmic-ray data collected at the Tracker Integration Facility, where 15\\% of the Tracker was tested. These results, together with those coming from the CMS global run, will provide the basis for the full-scale alignment of the Tracker, which will be carried out with the first \\emph{p-p} collisions.

  10. Space Mirror Alignment System

    Science.gov (United States)

    Jau, Bruno M.; McKinney, Colin; Smythe, Robert F.; Palmer, Dean L.

    2011-01-01

    An optical alignment mirror mechanism (AMM) has been developed with angular positioning accuracy of +/-0.2 arcsec. This requires the mirror s linear positioning actuators to have positioning resolutions of +/-112 nm to enable the mirror to meet the angular tip/tilt accuracy requirement. Demonstrated capabilities are 0.1 arc-sec angular mirror positioning accuracy, which translates into linear positioning resolutions at the actuator of 50 nm. The mechanism consists of a structure with sets of cross-directional flexures that enable the mirror s tip and tilt motion, a mirror with its kinematic mount, and two linear actuators. An actuator comprises a brushless DC motor, a linear ball screw, and a piezoelectric brake that holds the mirror s position while the unit is unpowered. An interferometric linear position sensor senses the actuator s position. The AMMs were developed for an Astrometric Beam Combiner (ABC) optical bench, which is part of an interferometer development. Custom electronics were also developed to accommodate the presence of multiple AMMs within the ABC and provide a compact, all-in-one solution to power and control the AMMs.

  11. Magnetic alignment and the Poisson alignment reference system

    Science.gov (United States)

    Griffith, L. V.; Schenz, R. F.; Sommargren, G. E.

    1990-08-01

    Three distinct metrological operations are necessary to align a free-electron laser (FEL): the magnetic axis must be located, a straight line reference (SLR) must be generated, and the magnetic axis must be related to the SLR. This article begins with a review of the motivation for developing an alignment system that will assure better than 100-μm accuracy in the alignment of the magnetic axis throughout an FEL. The 100-μm accuracy is an error circle about an ideal axis for 300 m or more. The article describes techniques for identifying the magnetic axes of solenoids, quadrupoles, and wiggler poles. Propagation of a laser beam is described to the extent of revealing sources of nonlinearity in the beam. Development of a straight-line reference based on the Poisson line, a diffraction effect, is described in detail. Spheres in a large-diameter laser beam create Poisson lines and thus provide a necessary mechanism for gauging between the magnetic axis and the SLR. Procedures for installing FEL components and calibrating alignment fiducials to the magnetic axes of the components are also described. The Poisson alignment reference system should be accurate to 25 μm over 300 m, which is believed to be a factor-of-4 improvement over earlier techniques. An error budget shows that only 25% of the total budgeted tolerance is used for the alignment reference system, so the remaining tolerances should fall within the allowable range for FEL alignment.

  12. A Switched Diversity Scheme for Massive MIMO Systems

    Directory of Open Access Journals (Sweden)

    Qianya Wang

    2014-01-01

    Full Text Available With the constraint of antenna space, spatial correlation and mutual coupling must be considered to accurately predict the system performance for massive MIMO systems. Increasing the antenna quantity can degrade the system performance due to mutual coupling. Antenna selection systems have better performance and lower hardware cost than full-MIMO systems. However, the conventional selection combining (SC scheme consumes a great amount of training overhead and has high operational complexity in the presence of mutual coupling. This paper proposes a group switch-and-examine combining (GSEC scheme for massive MIMO systems with the spatial correlation and mutual coupling existing at both the transmitter and receiver. Simulation results demonstrate that the proposed GSEC scheme provides better effective capacity performance and lower operational complexity than the conventional selection combining (SC and full-MIMO scheme.

  13. General Projective Synchronization and Fractional Order Chaotic Masking Scheme

    Institute of Scientific and Technical Information of China (English)

    Shi-Quan Shao

    2008-01-01

    In this paper, a fractional order chaotic masking scheme used for secure communication is introduced. Based on the general projective synchronization of two coupled fractional Chert systems, a popular masking scheme is designed. Numerical example is given to demonstrate the effectiveness of the proposed method.

  14. General Projective Synchronization and Fractional Order Chaotic Masking Scheme

    Institute of Scientific and Technical Information of China (English)

    Shi-Quan Shao

    2008-01-01

    In this paper, a fractional order chaoticmasking scheme used for secure communication isintroduced. Based on the general projectivesynchronization of two coupled fractional Chen systems,a popular masking scheme is designed. Numericalexample is given to demonstrate the effectiveness of theproposed method.

  15. A Fuzzy Commitment Scheme

    CERN Document Server

    Al-saggaf, Alawi A

    2008-01-01

    This paper attempt has been made to explain a fuzzy commitment scheme. In the conventional Commitment schemes, both committed string m and valid opening key are required to enable the sender to prove the commitment. However there could be many instances where the transmission involves noise or minor errors arising purely because of the factors over which neither the sender nor the receiver have any control. The fuzzy commitment scheme presented in this paper is to accept the opening key that is close to the original one in suitable distance metric, but not necessarily identical. The concept itself is illustrated with the help of simple situation.

  16. Aligning for Innovation - Alignment Strategy to Drive Innovation

    Science.gov (United States)

    Johnson, Hurel; Teltschik, David; Bussey, Horace, Jr.; Moy, James

    2010-01-01

    With the sudden need for innovation that will help the country achieve its long-term space exploration objectives, the question of whether NASA is aligned effectively to drive the innovation that it so desperately needs to take space exploration to the next level should be entertained. Authors such as Robert Kaplan and David North have noted that companies that use a formal system for implementing strategy consistently outperform their peers. They have outlined a six-stage management systems model for implementing strategy, which includes the aligning of the organization towards its objectives. This involves the alignment of the organization from the top down. This presentation will explore the impacts of existing U.S. industrial policy on technological innovation; assess the current NASA organizational alignment and its impacts on driving technological innovation; and finally suggest an alternative approach that may drive the innovation needed to take the world to the next level of space exploration, with NASA truly leading the way.

  17. Tabled Execution in Scheme

    Energy Technology Data Exchange (ETDEWEB)

    Willcock, J J; Lumsdaine, A; Quinlan, D J

    2008-08-19

    Tabled execution is a generalization of memorization developed by the logic programming community. It not only saves results from tabled predicates, but also stores the set of currently active calls to them; tabled execution can thus provide meaningful semantics for programs that seemingly contain infinite recursions with the same arguments. In logic programming, tabled execution is used for many purposes, both for improving the efficiency of programs, and making tasks simpler and more direct to express than with normal logic programs. However, tabled execution is only infrequently applied in mainstream functional languages such as Scheme. We demonstrate an elegant implementation of tabled execution in Scheme, using a mix of continuation-passing style and mutable data. We also show the use of tabled execution in Scheme for a problem in formal language and automata theory, demonstrating that tabled execution can be a valuable tool for Scheme users.

  18. Institutional analysis of incentive schemes for ecosystem service provision - a comparative study across four European countries

    DEFF Research Database (Denmark)

    Prokofieva, Irina; Górriz, Elena; Boon, Tove Enggrob;

    2014-01-01

    Incentive schemes and payments for ecosystem services attract increasing attention as a means for aligning the interests of landowners and society by remunerating forest owners for the goods and services their forests produce. As incentive schemes expand around the world, questions related...... and Italy. The analysed schemes are predominantly aimed at enhancing biodiversity and improving recreation. One of the schemes is also related to preserving a variety of forest ecosystem services from forest fires. The incentive schemes are studied following a framework for the institutional analysis of PES...

  19. Magnetic axis alignment and the Poisson alignment reference system

    Science.gov (United States)

    Griffith, Lee V.; Schenz, Richard F.; Sommargren, Gary E.

    1989-01-01

    Three distinct metrological operations are necessary to align a free-electron laser (FEL): the magnetic axis must be located, a straight line reference (SLR) must be generated, and the magnetic axis must be related to the SLR. This paper begins with a review of the motivation for developing an alignment system that will assure better than 100 micrometer accuracy in the alignment of the magnetic axis throughout an FEL. The paper describes techniques for identifying the magnetic axis of solenoids, quadrupoles, and wiggler poles. Propagation of a laser beam is described to the extent of revealing sources of nonlinearity in the beam. Development and use of the Poisson line, a diffraction effect, is described in detail. Spheres in a large-diameter laser beam create Poisson lines and thus provide a necessary mechanism for gauging between the magnetic axis and the SLR. Procedures for installing FEL components and calibrating alignment fiducials to the magnetic axes of the components are also described. An error budget shows that the Poisson alignment reference system will make it possible to meet the alignment tolerances for an FEL.

  20. Scheme of energy utilities

    International Nuclear Information System (INIS)

    This scheme defines the objectives relative to the renewable energies and the rational use of the energy in the framework of the national energy policy. It evaluates the needs and the potentialities of the regions and preconizes the actions between the government and the territorial organizations. The document is presented in four parts: the situation, the stakes and forecasts; the possible actions for new measures; the scheme management and the regional contributions analysis. (A.L.B.)

  1. Tubular Coupling

    Science.gov (United States)

    Rosenbaum, Bernard J. (Inventor)

    2000-01-01

    A system for coupling a vascular overflow graft or cannula to a heart pump. A pump pipe outlet is provided with an external tapered surface which receives the end of a compressible connula. An annular compression ring with a tapered internal bore surface is arranged about the cannula with the tapered internal surface in a facing relationship to the external tapered surface. The angle of inclination of the tapered surfaces is converging such that the spacing between the tapered surfaces decreases from one end of the external tapered surface to the other end thereby providing a clamping action of the tapered surface on a cannula which increases as a function of the length of cannula segment between the tapered surfaces. The annular compression ring is disposed within a tubular locking nut which threadedly couples to the pump and provides a compression force for urging the annular ring onto the cannula between the tapered surfaces. The nut has a threaded connection to the pump body. The threaded coupling to the pump body provides a compression force for the annular ring. The annular ring has an annular enclosure space in which excess cannula material from the compression between the tapered surfaces to "bunch up" in the space and serve as an enlarged annular ring segment to assist holding the cannula in place. The clamped cannula provides a seamless joint connection to the pump pipe outlet where the clamping force is uniformly applied to the cannula because of self alignment of the tapered surfaces. The nut can be easily disconnected to replace the pump if necessary.

  2. Aptaligner: Automated Software for Aligning Pseudorandom DNA X-Aptamers from Next-Generation Sequencing Data

    OpenAIRE

    Lu, Emily; Elizondo-Riojas, Miguel-Angel; Chang, Jeffrey T.; Volk, David E.

    2014-01-01

    Next-generation sequencing results from bead-based aptamer libraries have demonstrated that traditional DNA/RNA alignment software is insufficient. This is particularly true for X-aptamers containing specialty bases (W, X, Y, Z, ...) that are identified by special encoding. Thus, we sought an automated program that uses the inherent design scheme of bead-based X-aptamers to create a hypothetical reference library and Markov modeling techniques to provide improved alignments. Aptaligner provid...

  3. Codebook-based interference alignment for uplink MIMO interference channels

    KAUST Repository

    Lee, Hyun Ho

    2014-02-01

    In this paper, we propose a codebook-based interference alignment (IA) scheme in the constant multiple-input multipleoutput (MIMO) interference channel especially for the uplink scenario. In our proposed scheme, we assume cooperation among base stations (BSs) through reliable backhaul links so that global channel knowledge is available for all BSs, which enables BS to compute the transmit precoder and inform its quantized index to the associated user via limited rate feedback link.We present an upper bound on the rate loss of the proposed scheme and derive the scaling law of the feedback load tomaintain a constant rate loss relative to IA with perfect channel knowledge. Considering the impact of overhead due to training, cooperation, and feedback, we address the effective degrees of freedom (DOF) of the proposed scheme and derive the maximization of the effective DOF. From simulation results, we verify our analysis on the scaling law to preserve the multiplexing gain and confirm that the proposed scheme is more effective than the conventional IA scheme in terms of the effective DOF. © 2014 KICS.

  4. Expressive alignment language and implementation

    OpenAIRE

    Euzenat, Jérôme; Scharffe, François; Zimmermann, Antoine

    2007-01-01

    euzenat2007e This deliverable provides the description of an alignment language which is both expressive and independent from ontology languages. It defines the language through its abstract syntax and semantics depending on ontology language semantics. It then describes two concrete syntax: an exchange syntax in RDF/XML and a surface syntax for human consumption. Finally, it presents the current implementation of this expressive language within the Alignment API taking advantage of the OM...

  5. XTR-Kurosawa-Desmedt Scheme

    Institute of Scientific and Technical Information of China (English)

    DING XIU-HUAN; FU ZHI-GUO; ZHANG SHU-GONG

    2009-01-01

    This paper proposes an XTR version of the Kurosawa-Desmedt scheme. Our scheme is secure against adaptive choeen-ciphertext attack under the XTR version of the Decisional Diffie-Hellman assumption in the standard model. Comparing efficiency between the Kurosawa-Desmedt scheme and the proposed XTR-Kurosawa-Desmedt scheme, we find that the proposed scheme is more efficient than the Kurosawa-Desmedt scheme both in communication and computation without compromising security.

  6. First steps towards a generic sample preparation scheme for inorganic engineered nanoparticles in a complex matrix for detection, characterization, and quantification by asymmetric flow-field flow fractionation coupled to multi-angle light scattering and ICP-MS

    DEFF Research Database (Denmark)

    Wagner, Stephan; Legros, Samuel; Löschner, Katrin;

    2015-01-01

    elemental mass content by asymmetric flow-field flow fractionation coupled to a multi-angle light scattering detector and an inductively coupled plasma mass spectrometer. Following the proposed generic procedure SiO2-ENPs were separated from a tomato soup. Two potential sample preparation methods were...... tested these being acid digestion and colloidal extraction. With the developed method a complete SiO2-ENPs and matrix separation with a Si mass recovery >90% was achieved by acid digestion. The alteration of the particle size distribution was minimized by particle stabilization. The generic procedure...... which also provides quality criteria for method development is urgently needed for standardized and systematic development of procedures for separation of ENPs from a complex matrix. The chosen analytical technique was shown to be suitable for detecting SiO2-ENPs in a complex food matrix like tomato...

  7. Sequential injection-bead injection-lab-on-valve schemes for on-line solid phase extraction and preconcentration of ultra-trace levels of heavy metals with determination by electrothermal atomic absorption spectrometry and inductively coupled plasma mass spectrometry

    International Nuclear Information System (INIS)

    This communication presents an overview of the state-of-the-art of the exploitation of sequential injection (SI)-bead injection (BI)-lab-on-valve (LOV) schemes for automatic on-line sample pre-treatments interfaced with ETAAS and ICPMS detection as conducted in the authors' group. The discussions are focused on the applications of SI-BI-LOV protocols for on-line microcolumn based solid phase extraction of ultra-trace levels of heavy metals, employing the so-called renewable surface separation and preconcentration manipulatory scheme. Two types of sorbents have been employed as packing material, that is, the hydrophilic SP Sephadex C-25 cation exchange and iminodiacetate based Muromac A-1 chelating resins, and the hydrophobic poly(tetrafluoroethylene) (PTFE) and poly(styrene-divinylbenzene) copolymer alkylated with octadecyl groups (C18-PS/DVB). Using ETAAS as detection device, the easy-to-handle hydrophilic renewable reactors hold the features of improved R.S.D.s and LODs as compared to those operated in the conventional, permanent mode, in addition to the elimination of flow resistance. The hydrophobic columns fall into two categories, that is, the renewable one packed with C18-PS/DVB beads entails analogous R.S.D.s and LODs with respect to the conventional approach, while those with PTFE beads result in slightly inferior R.S.D.s and LODs by similar comparison, yet offering a wider dynamic range than when using an external permanent column. Moreover, the hydrophilic materials result in much higher enrichment of the analyte than the hydrophobic ones, although PTFE is the packing material that exhibits the best retention efficiency

  8. Dye alignment in luminescent solar concentrators: II. Horizontal alignment for energy harvesting in linear polarizers

    Energy Technology Data Exchange (ETDEWEB)

    Mulder, Carlijn L.; Reusswig, Phil D.; Beyler, A. P.; Kim, Heekyung; Rotschild, Carmel; Baldo, Marc

    2010-04-26

    We describe Linearly Polarized Luminescent Solar Concentrators (LP-LSCs) to replace conventional, purely absorptive, linear polarizers in energy harvesting applications. As a proof of concept, we align 3-(2-Benzothiazolyl)-N,N-diethylumbelliferylamine (Coumarin 6) and 4-dicyanomethyl-6-dimethylaminostiryl-4H-pyran (DCM) dye molecules linearly in the plane of the substrate using a polymerizable liquid crystal host. We show that up to 38% of the photons polarized on the long axis of the dye molecules can be coupled to the edge of the device for an LP-LSC based on Coumarin 6 with an order parameter of 0.52.

  9. Sensing Characteristics of A Precision Aligner Using Moire Gratings for Precision Alignment System

    Institute of Scientific and Technical Information of China (English)

    ZHOU Lizhong; Hideo Furuhashi; Yoshiyuki Uchida

    2001-01-01

    Sensing characteristics of a precision aligner using moire gratings for precision alignment sysem has been investigated. A differential moire alignment system and a modified alignment system were used. The influence of the setting accuracy of the gap length and inclination of gratings on the alignment accuracy has been studied experimentally and theoretically. Setting accuracy of the gap length less than 2.5μm is required in modified moire alignment. There is no influence of the gap length on the alignment accuracy in the differential alignment system. The inclination affects alignment accuracies in both differential and modified moire alignment systems.

  10. Nonstandard finite difference schemes

    Science.gov (United States)

    Mickens, Ronald E.

    1995-01-01

    The major research activities of this proposal center on the construction and analysis of nonstandard finite-difference schemes for ordinary and partial differential equations. In particular, we investigate schemes that either have zero truncation errors (exact schemes) or possess other significant features of importance for numerical integration. Our eventual goal is to bring these methods to bear on problems that arise in the modeling of various physical, engineering, and technological systems. At present, these efforts are extended in the direction of understanding the exact nature of these nonstandard procedures and extending their use to more complicated model equations. Our presentation will give a listing (obtained to date) of the nonstandard rules, their application to a number of linear and nonlinear, ordinary and partial differential equations. In certain cases, numerical results will be presented.

  11. Coupling between the JULES land-surface scheme and the CCATT-BRAMS atmospheric chemistry model (JULES-CCATT-BRAMS1.0: applications to numerical weather forecasting and the CO2 budget in South America

    Directory of Open Access Journals (Sweden)

    D. S. Moreira

    2013-01-01

    Full Text Available This article presents the development of a new numerical system denominated JULES-CCATT-BRAMS, which resulted from the coupling of the JULES surface model to the CCATT-BRAMS atmospheric chemistry model. The performance of this system in relation to several meteorological variables (wind speed at 10 m, air temperature at 2 m, dew point temperature at 2 m, pressure reduced to mean sea level and 6 h accumulated precipitation and the CO2 concentration above an extensive area of South America is also presented, focusing on the Amazon basin. The evaluations were conducted for two periods, the wet (March and dry (September seasons of 2010. The statistics used to perform the evaluation included bias (BIAS and root mean squared error (RMSE. The errors were calculated in relation to observations at conventional stations in airports and automatic stations. In addition, CO2 concentrations in the first model level were compared with meteorological tower measurements and vertical CO2 profiles were compared with aircraft data. The results of this study show that the JULES model coupled to CCATT-BRAMS provided a significant gain in performance in the evaluated atmospheric fields relative to those simulated by the LEAF (version 3 surface model originally utilized by CCATT-BRAMS. Simulations of CO2 concentrations in Amazonia and a comparison with observations are also discussed and show that the system presents a gain in performance relative to previous studies. Finally, we discuss a wide range of numerical studies integrating coupled atmospheric, land surface and chemistry processes that could be produced with the system described here. Therefore, this work presents to the scientific community a free tool, with good performance in relation to the observed data and re-analyses, able to produce atmospheric simulations/forecasts at different resolutions, for any period of time and in any region of the globe.

  12. Plasmonic Antenna Coupling for QWIPs

    Science.gov (United States)

    Hong, John

    2007-01-01

    In a proposed scheme for coupling light into a quantum-well infrared photodetector (QWIP), an antenna or an array of antennas made of a suitable metal would be fabricated on the face of what would otherwise be a standard QWIP. This or any such coupling scheme is required to effect polarization conversion: Light incident perpendicularly to the face is necessarily polarized in the plane of the face, whereas, as a matter of fundamental electrodynamics and related quantum selection rules, light must have a non-zero component of perpendicular polarization in order to be absorbed in the photodetection process. In a prior coupling scheme, gratings in the form of surface corrugations diffract normally gles, thereby imparting some perpendicular polarization. Unfortunately, the corrugation- fabrication process increases the overall nonuniformity of a large QWIP array. The proposed scheme is an alternative to the use of surface corrugations.

  13. DIDA: Distributed Indexing Dispatched Alignment.

    Directory of Open Access Journals (Sweden)

    Hamid Mohamadi

    Full Text Available One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too large, the alignment process becomes computationally challenging. This is usually addressed by preprocessing techniques, where the queries and/or targets are indexed for easy access while searching for matches. When the target is static, such as in an established reference genome, the cost of indexing is amortized by reusing the generated index. However, when the targets are non-static, such as contigs in the intermediate steps of a de novo assembly process, a new index must be computed for each run. To address such scalability problems, we present DIDA, a novel framework that distributes the indexing and alignment tasks into smaller subtasks over a cluster of compute nodes. It provides a workflow beyond the common practice of embarrassingly parallel implementations. DIDA is a cost-effective, scalable and modular framework for the sequence alignment problem in terms of memory usage and runtime. It can be employed in large-scale alignments to draft genomes and intermediate stages of de novo assembly runs. The DIDA source code, sample files and user manual are available through http://www.bcgsc.ca/platform/bioinfo/software/dida. The software is released under the British Columbia Cancer Agency License (BCCA, and is free for academic use.

  14. Volume visualization of multiple alignment of genomic DNA

    Energy Technology Data Exchange (ETDEWEB)

    Shah, Nameeta; Weber, Gunther H.; Dillard, Scott E.; Hamann, Bernd

    2004-05-01

    Genomes of hundreds of species have been sequenced to date and many more are being sequenced. As more and more sequence data sets become available, and as the challenge of comparing these massive ''billion basepair DNA sequences'' becomes substantial, so does the need for more powerful tools supporting the exploration of these data sets. Similarity score data used to compare aligned DNA sequences is inherently one-dimensional. One-dimensional (1D) representations of these data sets do not effectively utilize screen real estate. We present a technique to arrange 1D data in 3D space to allow us to apply state-of-the-art interactive volume visualization techniques for data exploration. We provide results for aligned DNA sequence data and compare it with traditional 1D line plots. Our technique, coupled with 1D line plots, results in effective multiresolution visualization of very large aligned sequence data sets.

  15. Geodetic alignment of laser power installations

    International Nuclear Information System (INIS)

    Main problems occuring in applied geodesy under initial alignment of laser power installation optical channel are considered. Attention is paid to alignment of lens beamguide telescopic pairs and alignment quality control. Methods and means of geodetic measurements under alignment are indicated. Conclusions are made about the degree of working through certain aspects of the problem

  16. Photosensitive Polymers for Liquid Crystal Alignment

    Science.gov (United States)

    Mahilny, U. V.; Stankevich, A. I.; Trofimova, A. V.; Muravsky, A. A.; Murauski, A. A.

    The peculiarities of alignment of liquid crystal (LC) materials by the layers of photocrosslinkable polymers with side benzaldehyde groups are considered. The investigation of mechanism of photostimulated alignment by rubbed benzaldehyde layer is performed. The methods of creation of multidomain aligning layers on the basis of photostimulated rubbing alignment are described.

  17. Alignment method for parabolic trough solar concentrators

    Science.gov (United States)

    Diver, Richard B.

    2010-02-23

    A Theoretical Overlay Photographic (TOP) alignment method uses the overlay of a theoretical projected image of a perfectly aligned concentrator on a photographic image of the concentrator to align the mirror facets of a parabolic trough solar concentrator. The alignment method is practical and straightforward, and inherently aligns the mirror facets to the receiver. When integrated with clinometer measurements for which gravity and mechanical drag effects have been accounted for and which are made in a manner and location consistent with the alignment method, all of the mirrors on a common drive can be aligned and optimized for any concentrator orientation.

  18. Link Monotonic Allocation Schemes

    NARCIS (Netherlands)

    Slikker, M.

    1999-01-01

    A network is a graph where the nodes represent players and the links represent bilateral interaction between the players. A reward game assigns a value to every network on a fixed set of players. An allocation scheme specifies how to distribute the worth of every network among the players. This allo

  19. Alternative health insurance schemes

    DEFF Research Database (Denmark)

    Keiding, Hans; Hansen, Bodil O.

    2002-01-01

    In this paper, we present a simple model of health insurance with asymmetric information, where we compare two alternative ways of organizing the insurance market. Either as a competitive insurance market, where some risks remain uninsured, or as a compulsory scheme, where however, the level...... competitive insurance; this situation turns out to be at least as good as either of the alternatives...

  20. Strategic Alignment and New Product Development

    DEFF Research Database (Denmark)

    Acur, Nuran; Kandemir, Destan; Boer, Harry

    2012-01-01

    of NPD performance indicators. Strategic planning and innovativeness appear to affect technological, market, and NPD-marketing alignment positively. Environmental munificence is negatively associated with NPD-marketing alignment, but has no effect on the two other forms of alignment. Technological change......Strategic alignment is widely accepted as a prerequisite for a firm’s success, but insight into the role of alignment in, and its impact on, the new product evelopment (NPD) process and its performance is less well developed. Most publications on this topic either focus on one form of alignment...... has a positive effect on technological alignment, a negative effect on NPD-marketing alignment, but no effect on market alignment. These findings suggest that internal capabilities are more likely to be associated with the development of strategic alignment than environmental factors are. Furthermore...

  1. Adaptive Processing for Sequence Alignment

    KAUST Repository

    Zidan, Mohammed Affan

    2012-01-26

    Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.

  2. Topology independent protein structural alignment

    Directory of Open Access Journals (Sweden)

    DasGupta Bhaskar

    2007-10-01

    Full Text Available Abstract Background Identifying structurally similar proteins with different chain topologies can aid studies in homology modeling, protein folding, protein design, and protein evolution. These include circular permuted protein structures, and the more general cases of non-cyclic permutations between similar structures, which are related by non-topological rearrangement beyond circular permutation. We present a method based on an approximation algorithm that finds sequence-order independent structural alignments that are close to optimal. We formulate the structural alignment problem as a special case of the maximum-weight independent set problem, and solve this computationally intensive problem approximately by iteratively solving relaxations of a corresponding integer programming problem. The resulting structural alignment is sequence order independent. Our method is also insensitive to insertions, deletions, and gaps. Results Using a novel similarity score and a statistical model for significance p-value, we are able to discover previously unknown circular permuted proteins between nucleoplasmin-core protein and auxin binding protein, between aspartate rasemase and 3-dehydrogenate dehydralase, as well as between migration inhibition factor and arginine repressor which involves an additional strand-swapping. We also report the finding of non-cyclic permuted protein structures existing in nature between AML1/core binding factor and ribofalvin synthase. Our method can be used for large scale alignment of protein structures regardless of the topology. Conclusion The approximation algorithm introduced in this work can find good solutions for the problem of protein structure alignment. Furthermore, this algorithm can detect topological differences between two spatially similar protein structures. The alignment between MIF and the arginine repressor demonstrates our algorithm's ability to detect structural similarities even when spatial

  3. NUMERICAL SIMULATIONS OF SEA ICE WITH DIFFERENT ADVECTION SCHEMES

    Institute of Scientific and Technical Information of China (English)

    LIU Xi-ying

    2011-01-01

    Numerical simulations are carried out for sea ice with four different advection schemes to study their effects on the simulation results.The sea ice model employed here is the Sea Ice Simulator (SIS) of the Geophysical Fluid Dynamics Laboratory (GFDL) Modular Ocean Model version 4b (MOM4b) and the four advection schemes are, the upwind scheme originally used in the SIS, the Multi-Dimensional Positive Advection (MDPA) scheme, the Incremental Remapping Scheme (IRS) and the Two Step Shape Preserving (TSSP) scheme.The latter three schemes are newly introduced.To consider the interactions between sea ice and ocean, a mixed layer ocean model is introduced and coupled to the SIS.The coupled model uses a tri-polar coordinate with 120×65 grids,covering the whole earth globe, in the horizontal plane.Simulation results in the northern high latitudes are analyzed.In all simulations, the model reproduces the seasonal variation of sea ice in the northern high latitudes well.Compared with the results from the observation, the sea ice model produces some extra sea ice coverage in the Greenland Sea and Barents Sea in winter due to the exclusion of ocean current effects and the smaller simulated sea ice thickness in the Arctic basin.There are similar features among the results obtained with the introduced three advection schemes.The simulated sea ice thickness with the three newly introduced schemes are all smaller than that of the upwind scheme and the simulated sea ice velocities of movement are all smaller than that of the upwind scheme.There are more similarities shared in the results obtained with the MPDA and TSSP schemes.

  4. Hardware Accelerated Sequence Alignment with Traceback

    OpenAIRE

    Scott Lloyd; Snell, Quinn O

    2009-01-01

    Biological sequence alignment is an essential tool used in molecular biology and biomedical applications. The growing volume of genetic data and the complexity of sequence alignment present a challenge in obtaining alignment results in a timely manner. Known methods to accelerate alignment on reconfigurable hardware only address sequence comparison, limit the sequence length, or exhibit memory and I/O bottlenecks. A space-efficient, global sequence alignment algorithm and architecture is pres...

  5. Coupling between the JULES land-surface scheme and the CCATT-BRAMS atmospheric chemistry model (JULES-CCATT-BRAMS1.0: applications to numerical weather forecasting and the CO2 budget in South America

    Directory of Open Access Journals (Sweden)

    D. S. Moreira

    2013-08-01

    Full Text Available This article presents the coupling of the JULES surface model to the CCATT-BRAMS atmospheric chemistry model. This new numerical system is denominated JULES-CCATT-BRAMS. We demonstrate the performance of this new model system in relation to several meteorological variables and the CO2 mixing ratio over a large part of South America, focusing on the Amazon basin. The evaluation was conducted for two time periods, the wet (March and dry (September seasons of 2010. The model errors were calculated in relation to meteorological observations at conventional stations in airports and automatic stations. In addition, CO2 mixing ratios in the first model level were compared with meteorological tower measurements and vertical CO2 profiles were compared with observations obtained with airborne instruments. The results of this study show that the JULES-CCATT-BRAMS modeling system provided a significant gain in performance for the considered atmospheric fields relative to those simulated by the LEAF (version 3 surface model originally employed by CCATT-BRAMS. In addition, the new system significantly increases the ability to simulate processes involving air–surface interactions, due to the ability of JULES to simulate photosynthesis, respiration and dynamic vegetation, among other processes. We also discuss a wide range of numerical studies involving coupled atmospheric, land surface and chemistry processes that could be done with the system introduced here. Thus, this work presents to the scientific community a free modeling tool, with good performance in comparison with observational data and reanalysis model data, at least for the region and time period discussed here. Therefore, in principle, this model is able to produce atmospheric hindcast/forecast simulations at different spatial resolutions for any time period and any region of the globe.

  6. XUV ionization of aligned molecules

    Energy Technology Data Exchange (ETDEWEB)

    Kelkensberg, F.; Siu, W.; Gademann, G. [FOM Institute AMOLF, Science Park 104, NL-1098 XG Amsterdam (Netherlands); Rouzee, A.; Vrakking, M. J. J. [FOM Institute AMOLF, Science Park 104, NL-1098 XG Amsterdam (Netherlands); Max-Born-Institut, Max-Born Strasse 2A, D-12489 Berlin (Germany); Johnsson, P. [FOM Institute AMOLF, Science Park 104, NL-1098 XG Amsterdam (Netherlands); Department of Physics, Lund University, Post Office Box 118, SE-221 00 Lund (Sweden); Lucchini, M. [Department of Physics, Politecnico di Milano, Istituto di Fotonica e Nanotecnologie CNR-IFN, Piazza Leonardo da Vinci 32, 20133 Milano (Italy); Lucchese, R. R. [Department of Chemistry, Texas A and M University, College Station, Texas 77843-3255 (United States)

    2011-11-15

    New extreme-ultraviolet (XUV) light sources such as high-order-harmonic generation (HHG) and free-electron lasers (FELs), combined with laser-induced alignment techniques, enable novel methods for making molecular movies based on measuring molecular frame photoelectron angular distributions. Experiments are presented where CO{sub 2} molecules were impulsively aligned using a near-infrared laser and ionized using femtosecond XUV pulses obtained by HHG. Measured electron angular distributions reveal contributions from four orbitals and the onset of the influence of the molecular structure.

  7. Spin–orbit coupling in actinide cations

    DEFF Research Database (Denmark)

    Bagus, Paul S.; Ilton, Eugene S.; Martin, Richard L.;

    2012-01-01

    The limiting case of Russell–Saunders coupling, which leads to a maximum spin alignment for the open shell electrons, usually explains the properties of high spin ionic crystals with transition metals. For actinide compounds, the spin–orbit splitting is large enough to cause a significantly reduc...... spin alignment. Novel concepts are used to explain the dependence of the spin alignment on the 5f shell occupation. We present evidence that the XPS of ionic actinide materials may provide direct information about the angular momentum coupling within the 5f shell....

  8. A divide and conquer approach to multiple alignment.

    Science.gov (United States)

    Dress, A; Füllen, G; Perrey, S

    1995-01-01

    We present a report on work in progress on a divide and conquer approach to multiple alignment. The algorithm makes use of the costs calculated from applying the standard dynamic programming scheme to all pairs of sequences. The resulting cost matrices for pairwise alignment give rise to secondary matrices containing the additional costs imposed by fixing the path through the dynamic programming graph at a particular vertex. Such a constraint corresponds to a division of the problem obtained by slicing both sequences between two particular positions, and aligning the two sequences on the left and the two sequences on the right, charging for gaps introduced at the slicing point. To obtain an estimate for the additional cost imposed by forcing the multiple alignment through a particular vertex in the whole hypercube, we will take a (weighted) sum of secondary costs over all pairwise projections of the division of the problem, as defined by this vertex, that is, by slicing all sequences at the points suggested by the vertex. We then use that partition of every single sequence under consideration into two 'halfs' which imposes a minimal (weighted) sum of pairwise additional costs, making sure that one of the sequences is divided somewhere close to its midpoint. Hence, each iteration can cut the problem size in half. As the enumeration of all possible partitions may restrict this approach to small-size problems, we eliminate futile partitions, and organize their enumeration in a way that starts with the most promising ones.(ABSTRACT TRUNCATED AT 250 WORDS)

  9. A High Resolution Low Dissipation Hybrid Scheme for Compressible Flows

    Institute of Scientific and Technical Information of China (English)

    YU Jian; YAN Chao; JIANG Zhenhua

    2011-01-01

    In this paper,an efficient hybrid shock capturing scheme is proposed to obtain accurate results both in the smooth region and around discontinuities for compressible flows.The hybrid algorithm is based on a fifth-order weighted essentially non-oscillatory (WENO) scheme in the finite volume form to solve the smooth part of the flow field,which is coupled with a characteristic-based monotone upstream-centered scheme for conservation laws(MUSCL) to capture discontinuities.The hybrid scheme is intended to combine high resolution of MUSCL scheme and low dissipation of WENO scheme.The two ingredients in this hybrid scheme are switched with an indicator.Three typical indicators are chosen and compared.MUSCL and WENO are both shock capturing schemes making the choice of the indicator parameter less crucial.Several test cases are carried out to investigate hybrid scheme with different indicators in terms of accuracy and efficiency.Numerical results demonstrate that the hybrid scheme in the present work performs well in a broad range of problems.

  10. A simple scheme to generate x-type four-charge entangled states in circuit QED

    Institute of Scientific and Technical Information of China (English)

    Gao Gui-Long; Song Fu-Quan; Huang Shou-Sheng; Wang Hui; Yuan Xian-Zhang; Wang Ming-Feng; Jiang Nian-Quan

    2012-01-01

    We propose a simple scheme to generate x-type four-charge entangled states by using SQUID-based charge qubits capacitively coupled to a transmission line resonator (TLR).The coupling between the superconducting qubit and the TLR can be effectively controlled by properly adjusting the control parameters of the charge qubit.The experimental feasibility of our scheme is also shown.

  11. Detailed source term estimation of the atmospheric release for the Fukushima Daiichi Nuclear Power Station accident by coupling simulations of an atmospheric dispersion model with an improved deposition scheme and oceanic dispersion model

    Science.gov (United States)

    Katata, G.; Chino, M.; Kobayashi, T.; Terada, H.; Ota, M.; Nagai, H.; Kajino, M.; Draxler, R.; Hort, M. C.; Malo, A.; Torii, T.; Sanada, Y.

    2015-01-01

    Temporal variations in the amount of radionuclides released into the atmosphere during the Fukushima Daiichi Nuclear Power Station (FNPS1) accident and their atmospheric and marine dispersion are essential to evaluate the environmental impacts and resultant radiological doses to the public. In this paper, we estimate the detailed atmospheric releases during the accident using a reverse estimation method which calculates the release rates of radionuclides by comparing measurements of air concentration of a radionuclide or its dose rate in the environment with the ones calculated by atmospheric and oceanic transport, dispersion and deposition models. The atmospheric and oceanic models used are WSPEEDI-II (Worldwide version of System for Prediction of Environmental Emergency Dose Information) and SEA-GEARN-FDM (Finite difference oceanic dispersion model), both developed by the authors. A sophisticated deposition scheme, which deals with dry and fog-water depositions, cloud condensation nuclei (CCN) activation, and subsequent wet scavenging due to mixed-phase cloud microphysics (in-cloud scavenging) for radioactive iodine gas (I2 and CH3I) and other particles (CsI, Cs, and Te), was incorporated into WSPEEDI-II to improve the surface deposition calculations. The results revealed that the major releases of radionuclides due to the FNPS1 accident occurred in the following periods during March 2011: the afternoon of 12 March due to the wet venting and hydrogen explosion at Unit 1, midnight of 14 March when the SRV (safety relief valve) was opened three times at Unit 2, the morning and night of 15 March, and the morning of 16 March. According to the simulation results, the highest radioactive contamination areas around FNPS1 were created from 15 to 16 March by complicated interactions among rainfall, plume movements, and the temporal variation of release rates. The simulation by WSPEEDI-II using the new source term reproduced the local and regional patterns of cumulative

  12. Application of an Online-Coupled Regional Climate Model, WRF-CAM5, over East Asia for Examination of Ice Nucleation Schemes: Part I. Comprehensive Model Evaluation and Trend Analysis for 2006 and 2011

    Directory of Open Access Journals (Sweden)

    Ying Chen

    2015-08-01

    Full Text Available Online-coupled climate and chemistry models are necessary to realistically represent the interactions between climate variables and chemical species and accurately simulate aerosol direct and indirect effects on cloud, precipitation, and radiation. In this Part I of a two-part paper, simulations from the Weather Research and Forecasting model coupled with the physics package of Community Atmosphere Model (WRF-CAM5 are conducted with the default heterogeneous ice nucleation parameterization over East Asia for two full years: 2006 and 2011. A comprehensive model evaluation is performed using satellite and surface observations. The model shows an overall acceptable performance for major meteorological variables at the surface and in the boundary layer, as well as column variables (e.g., precipitation, cloud fraction, precipitating water vapor, downward longwave and shortwave radiation. Moderate to large biases exist for cloud condensation nuclei over oceanic areas, cloud variables (e.g., cloud droplet number concentration, cloud liquid and ice water paths, cloud optical depth, longwave and shortwave cloud forcing. These biases indicate a need to improve the model treatments for cloud processes, especially cloud droplets and ice nucleation, as well as to reduce uncertainty in the satellite retrievals. The model simulates well the column abundances of chemical species except for column SO2 but relatively poor for surface concentrations of several species such as CO, NO2, SO2, PM2.5, and PM10. Several reasons could contribute to the underestimation of major chemical species in East Asia including underestimations of anthropogenic emissions and natural dust emissions, uncertainties in the spatial and vertical distributions of the anthropogenic emissions, as well as biases in meteorological, radiative, and cloud predictions. Despite moderate to large biases in the chemical predictions, the model performance is generally consistent with or even better

  13. On Converting Secret Sharing Scheme to Visual Secret Sharing Scheme

    Directory of Open Access Journals (Sweden)

    Wang Daoshun

    2010-01-01

    Full Text Available Abstract Traditional Secret Sharing (SS schemes reconstruct secret exactly the same as the original one but involve complex computation. Visual Secret Sharing (VSS schemes decode the secret without computation, but each share is m times as big as the original and the quality of the reconstructed secret image is reduced. Probabilistic visual secret sharing (Prob.VSS schemes for a binary image use only one subpixel to share the secret image; however the probability of white pixels in a white area is higher than that in a black area in the reconstructed secret image. SS schemes, VSS schemes, and Prob. VSS schemes have various construction methods and advantages. This paper first presents an approach to convert (transform a -SS scheme to a -VSS scheme for greyscale images. The generation of the shadow images (shares is based on Boolean XOR operation. The secret image can be reconstructed directly by performing Boolean OR operation, as in most conventional VSS schemes. Its pixel expansion is significantly smaller than that of VSS schemes. The quality of the reconstructed images, measured by average contrast, is the same as VSS schemes. Then a novel matrix-concatenation approach is used to extend the greyscale -SS scheme to a more general case of greyscale -VSS scheme.

  14. Aligned natural inflation with modulations

    Science.gov (United States)

    Choi, Kiwoon; Kim, Hyungjin

    2016-08-01

    The weak gravity conjecture applied for the aligned natural inflation indicates that generically there can be a modulation of the inflaton potential, with a period determined by sub-Planckian axion scale. We study the oscillations in the primordial power spectrum induced by such modulation, and discuss the resulting observational constraints on the model.

  15. Laser-Beam-Alignment Controller

    Science.gov (United States)

    Krasowski, M. J.; Dickens, D. E.

    1995-01-01

    In laser-beam-alignment controller, images from video camera compared to reference patterns by fuzzy-logic pattern comparator. Results processed by fuzzy-logic microcontroller, which sends control signals to motor driver adjusting lens and pinhole in spatial filter.

  16. Aligned natural inflation with modulations

    CERN Document Server

    Choi, Kiwoon

    2015-01-01

    The weak gravity conjecture applied for the aligned natural inflation indicates that generically there can be a modulation of the inflaton potential, with a period determined by sub-Planckian axion scale. We study the oscillations in the primordial power spectrum induced by such modulation, and discuss the resulting observational constraints on the model.

  17. Aligned natural inflation with modulations

    Directory of Open Access Journals (Sweden)

    Kiwoon Choi

    2016-08-01

    Full Text Available The weak gravity conjecture applied for the aligned natural inflation indicates that generically there can be a modulation of the inflaton potential, with a period determined by sub-Planckian axion scale. We study the oscillations in the primordial power spectrum induced by such modulation, and discuss the resulting observational constraints on the model.

  18. Aligned natural inflation with modulations

    OpenAIRE

    Kiwoon Choi; Hyungjin Kim

    2016-01-01

    The weak gravity conjecture applied for the aligned natural inflation indicates that generically there can be a modulation of the inflaton potential, with a period determined by sub-Planckian axion scale. We study the oscillations in the primordial power spectrum induced by such modulation, and discuss the resulting observational constraints on the model.

  19. Self crimped and aligned fibers

    Directory of Open Access Journals (Sweden)

    Thinakaran Senthilram

    2011-05-01

    Full Text Available Electrospinning is one of the most successful means of producing nanofibers with enormous application potential. New methods of producing nanofibers without high voltages are presently being explored by researchers around the globe. In the present work, a facile method of producing aligned and crimped fibers with polycaprolactone by rotating the needle assembly is described.

  20. The Picard Scheme

    OpenAIRE

    Kleiman, Steven L.

    2013-01-01

    We develop in detail most of the theory of the Picard scheme that Grothendieck sketched in two Bourbaki talks and in commentaries on them. Also, we review in brief much of the rest of the theory developed by Grothendieck and by others. But we begin with a twelve-page historical introduction, which traces the development of the ideas from Bernoulli to Grothendieck, and which may appeal to a wider audience.

  1. Grain Alignment and CMB Polarization Studies

    CERN Document Server

    Lazarian, A

    2008-01-01

    Polarized microwave emission from dust is an important foreground that may contaminate polarized CMB studies unless carefully accounted for. Modeling of polarization from dust requires a quantitative understanding of grain alignment. I review the current status of grain alignment theory outlining recent advances in quantitative description of the alignment. In particular, I show that the grain-alignment theory is a predictive one, and its results nicely match observations. Those indicate that the most important process of alignment is related to radiative torques acting on irregular grains. The recently developed analytical model of radiative torque alignment has proven to be a very efficient tool for predicting the degree of grain alignment. We expect the alignment theory to further mature before CMBPol flight, which would ensure a better accounting for the dust-related polarization. At the same time, CMBPol should provide the additional testing of grain alignment, clarifying the reliability of polarimetry f...

  2. An Integral Formalism for the Construction of Scheme Transformations in Quantum Field Theory

    CERN Document Server

    Choi, Gongjun

    2016-01-01

    We present an integral formalism for constructing scheme transformations in a quantum field theory. We apply this to generate several new useful scheme transformations. A comparative analysis is given of these scheme transformations in terms of their series expansion coefficients and their resultant effect on the interaction coupling, in particular at a zero of the beta function away from the origin in coupling-constant space.

  3. Scheme for implementing frequency up-conversion between two collective atomic modes

    Institute of Scientific and Technical Information of China (English)

    Lin Li-Hua

    2009-01-01

    This paper presents a scheme for realizing the frequency up-conversion between two collective atomic modes. In the scheme two atomic samples are coupled to a cavity mode. Under the large detuning condition,the two collective atomic modes are coupled via the virtual excitation of the cavity mode and the effective Hamiltonian corresponds to the frequency up-conversion. In the scheme the cavity mode is only virtually excited and thus the process is insensitive to cavity decay.

  4. Efficient Scheme for Chemical Flooding Simulation

    Directory of Open Access Journals (Sweden)

    Braconnier Benjamin

    2014-07-01

    Full Text Available In this paper, we investigate an efficient implicit scheme for the numerical simulation of chemical enhanced oil recovery technique for oil fields. For the sake of brevity, we only focus on flows with polymer to describe the physical and numerical models. In this framework, we consider a black oil model upgraded with the polymer modeling. We assume the polymer only transported in the water phase or adsorbed on the rock following a Langmuir isotherm. The polymer reduces the water phase mobility which can change drastically the behavior of water oil interfaces. Then, we propose a fractional step technique to resolve implicitly the system. The first step is devoted to the resolution of the black oil subsystem and the second to the polymer mass conservation. In such a way, jacobian matrices coming from the implicit formulation have a moderate size and preserve solvers efficiency. Nevertheless, the coupling between the black-oil subsystem and the polymer is not fully resolved. For efficiency and accuracy comparison, we propose an explicit scheme for the polymer for which large time step is prohibited due to its CFL (Courant-Friedrichs-Levy criterion and consequently approximates accurately the coupling. Numerical experiments with polymer are simulated : a core flood, a 5-spot reservoir with surfactant and ions and a 3D real case. Comparisons are performed between the polymer explicit and implicit scheme. They prove that our polymer implicit scheme is efficient, robust and resolves accurately the coupling physics. The development and the simulations have been performed with the software PumaFlow [PumaFlow (2013 Reference manual, release V600, Beicip Franlab].

  5. Test Port for Fiber-Optic-Coupled Laser Altimeter

    Science.gov (United States)

    Ramos Izquierdo, Luis; Scott, V. Stanley; Rinis, Haris; Cavanaugh, John

    2011-01-01

    A test port designed as part of a fiber optic coupled laser altimeter receiver optical system allows for the back-illumination of the optical system for alignment verification, as well as illumination of the detector(s) for testing the receiver electronics and signal-processing algorithms. Measuring the optical alignment of a laser altimeter instrument is difficult after the instrument is fully assembled. The addition of a test port in the receiver aft-optics allows for the back-illumination of the receiver system such that its focal setting and boresight alignment can be easily verified. For a multiple-detector receiver system, the addition of the aft-optics test port offers the added advantage of being able to simultaneously test all the detectors with different signals that simulate the expected operational conditions. On a laser altimeter instrument (see figure), the aft-optics couple the light from the receiver telescope to the receiver detector(s). Incorporating a beam splitter in the aft-optics design allows for the addition of a test port to back-illuminate the receiver telescope and/or detectors. The aft-optics layout resembles a T with the detector on one leg, the receiver telescope input port on the second leg, and the test port on the third leg. The use of a custom beam splitter with 99-percent reflection, 1-percent transmission, and a mirrored roof can send the test port light to the receiver telescope leg as well as the detector leg, without unduly sacrificing the signal from the receiver telescope to the detector. The ability to test the receiver system alignment, as well as multiple detectors with different signals without the need to disassemble the instrument or connect and reconnect components, is a great advantage to the aft-optics test port. Another benefit is that the receiver telescope aperture is fully back-illuminated by the test port so the receiver telescope focal setting vs. pressure and or temperature can be accurately measured (as

  6. Pin-Align: A New Dynamic Programming Approach to Align Protein-Protein Interaction Networks

    OpenAIRE

    Farid Amir-Ghiasvand; Abbas Nowzari-Dalini; Vida Momenzadeh

    2014-01-01

    To date, few tools for aligning protein-protein interaction networks have been suggested. These tools typically find conserved interaction patterns using various local or global alignment algorithms. However, the improvement of the speed, scalability, simplification, and accuracy of network alignment tools is still the target of new researches. In this paper, we introduce Pin-Align, a new tool for local alignment of protein-protein interaction networks. Pin-Align accuracy is tested on protein...

  7. A Second-Order Accurate, Component-Wise TVD Scheme for Nonlinear, Hyperbolic Conservation Laws

    Science.gov (United States)

    Yu, Heng; Liu, Yu-Ping

    2001-10-01

    In this paper, we present a two-step, component-wise TVD scheme for nonlinear, hyperbolic conservation laws, which is obtained by combining the schemes of Mac Cormack and Warming-Beam. The scheme does not necessitate the characteristic decompositions of the usual TVD schemes. It employs component-wise limiting; hence the programming is much simpler, especially for complicated coupled systems. For Euler systems of conservation laws, we found the scheme is two times faster in computation than the usual TVD schemes based on field-by-field decomposition limiting. A lot of numerical results show primarily the value of the new method.

  8. Alternate MIMO relaying with three AF relays using interference alignment

    KAUST Repository

    Park, Kihong

    2012-06-01

    In this paper, we study a two-hop half-duplex relaying network with one source, one destination, and three amplify-and-forward (AF) relays equipped with M antennas each. We consider alternate transmission to compensate for the inherent loss of capacity pre-log factor 1/2 in half duplex mode, where source transmit message to two relays and the other relay alternately. The inter-relay interference caused by alternate transmission is aligned to make additional degrees of freedom (DOFs). It is shown that the proposed scheme enables us to exploit 3M/4 DOFs compared with the M/2 DOFs of conventional AF relaying. More specifically, suboptimal linear filter designs for a source and three relays are proposed to maximize the achievable sum-rate. We verify using some selected numerical results that the proposed filter designs give significant improvement of the sum-rate over a naive filter and conventional relaying schemes. © 2012 IEEE.

  9. Flavored Gauge Mediation, A Heavy Higgs, and Supersymmetric Alignment

    CERN Document Server

    Abdullah, Mohammad; Shadmi, Yael; Shirman, Yuri

    2012-01-01

    We show that the messenger-matter couplings of Flavored Gauge Mediation Models can generate substantial stop mixing, leading to Higgs masses around 126 GeV with colored superpartners below 2 TeV and even a TeV. These results are largely independent of the messenger scale. We study the spectra of a few examples with a single messenger pair coupling dominantly to the top, for different messenger scales. Flavor constraints in these models are obeyed by virtue of supersymmetric alignment: the same flavor symmetry that explains fermion masses dictates the structure of the matter-messenger couplings, and this structure is inherited by the soft terms. We also present the leading 1-loop and 2-loop contributions to the soft terms for general coupling matrices in generation space.

  10. Doping Scheme of Semiconducting Atomic Chains

    Science.gov (United States)

    Toshishige, Yamada; Saini, Subhash (Technical Monitor)

    1998-01-01

    Atomic chains, precise structures of atomic scale created on an atomically regulated substrate surface, are candidates for future electronics. A doping scheme for intrinsic semiconducting Mg chains is considered. In order to suppress the unwanted Anderson localization and minimize the deformation of the original band shape, atomic modulation doping is considered, which is to place dopant atoms beside the chain periodically. Group I atoms are donors, and group VI or VII atoms are acceptors. As long as the lattice constant is long so that the s-p band crossing has not occurred, whether dopant atoms behave as donors or acceptors is closely related to the energy level alignment of isolated atomic levels. Band structures are calculated for Br-doped (p-type) and Cs-doped (n-type) Mg chains using the tight-binding theory with universal parameters, and it is shown that the band deformation is minimized and only the Fermi energy position is modified.

  11. Theoretical and practical feasibility demonstration of a micrometric remotely controlled pre-alignment system for the CLIC linear collider

    CERN Document Server

    Mainaud Durand, H; Chritin, N; Griffet, S; Kemppinen, J; Sosin, M; Touze, T

    2011-01-01

    The active pre-alignment of the Compact Linear Collider (CLIC) is one of the key points of the project: the components must be pre-aligned w.r.t. a straight line within a few microns over a sliding window of 200 m, along the two linacs of 20 km each. The proposed solution consists of stretched wires of more than 200 m, overlapping over half of their length, which will be the reference of alignment. Wire Positioning Sensors (WPS), coupled to the supports to be pre-aligned, will perform precise and accurate measurements within a few microns w.r.t. these wires. A micrometric fiducialisation of the components and a micrometric alignment of the components on common supports will make the strategy of pre-alignment complete. In this paper, the global strategy of active pre-alignment is detailed and illustrated by the latest results demonstrating the feasibility of the proposed solution.

  12. Coupling Optimization Design for Aspirated Compressor Airfoil and Aspirated Scheme Based on CST Method%基于CST方法的吸附式压气机叶型及抽吸方案耦合优化设计

    Institute of Scientific and Technical Information of China (English)

    李俊; 刘波; 杨小东; 那振喆

    2015-01-01

    In order to explore the design characteristics of the aspirated airfoil,a new optimization design method which combines artificial bee colony algorithm with Class-Shape-Transformation (CST) method is pre⁃sented. The MISES code is chosen as the flow field solver. And the feasibility of the CST method applied to aspi⁃rated airfoil optimization is demonstrated in detail. Research results show that the coupling optimized design can make the total pressure loss reduction by 65%,and the turning angle increases by 3° based on ensuring strength. And the aerodynamic performance gets an obvious enhancement. For high subsonic aspirated airfoil optimized in this paper,changing the airfoil surface near the leading edge appropriately can control the Mach number,and avoid forming shock. This can prevent the increasing of the boundary layer thickness, and decrease the airfoil loss.%为了探索吸附式叶型设计特点,研究了一种将类别形状函数变换法(CST)方法和人工蜂群算法相结合,利用2D程序作为流场求解器,对吸附式叶型和抽吸方案进行耦合优化设计的新型吸附式压气机叶型设计方法,并且详细论证了CST方法用于吸附式叶型优化设计的可行性。研究结果表明:耦合优化设计之后在保证叶型强度未下降的基础上总压损失降低了65%,气流转折角增加了3°,气动性能得到较大的提升。针对所优化的进口高亚声速的吸附式叶型,通过适当改变叶型前缘处的型面,可以较好地控制气流马赫数,避免产生激波,从而防止附面层厚度增加,降低叶型损失。

  13. A PRACTICAL PROXY SIGNATURE SCHEME

    Directory of Open Access Journals (Sweden)

    Sattar Aboud

    2012-01-01

    Full Text Available A proxy signature scheme is a variation of the ordinary digital signature scheme which enables a proxy signer to generate signatures on behalf of an original signer. In this paper, we present two efficient types of proxy signature scheme. The first one is the proxy signature for warrant partial delegation combines an advantage of two well known warrant partial delegation schemes. This proposed proxy signature scheme is based on the difficulty of solving the discrete logarithm problem. The second proposed scheme is based on threshold delegation the proxy signer power to sign the message is share. We claim that the proposed proxy signature schemes meet the security requirements and more practical than the existing proxy signature schemes.

  14. Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) [v1; ref status: indexed, http://f1000r.es/4io

    OpenAIRE

    Martin, Andrew C. R.

    2014-01-01

    The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI li...

  15. Heuristic reusable dynamic programming: efficient updates of local sequence alignment.

    Science.gov (United States)

    Hong, Changjin; Tewfik, Ahmed H

    2009-01-01

    Recomputation of the previously evaluated similarity results between biological sequences becomes inevitable when researchers realize errors in their sequenced data or when the researchers have to compare nearly similar sequences, e.g., in a family of proteins. We present an efficient scheme for updating local sequence alignments with an affine gap model. In principle, using the previous matching result between two amino acid sequences, we perform a forward-backward alignment to generate heuristic searching bands which are bounded by a set of suboptimal paths. Given a correctly updated sequence, we initially predict a new score of the alignment path for each contour to select the best candidates among them. Then, we run the Smith-Waterman algorithm in this confined space. Furthermore, our heuristic alignment for an updated sequence shows that it can be further accelerated by using reusable dynamic programming (rDP), our prior work. In this study, we successfully validate "relative node tolerance bound" (RNTB) in the pruned searching space. Furthermore, we improve the computational performance by quantifying the successful RNTB tolerance probability and switch to rDP on perturbation-resilient columns only. In our searching space derived by a threshold value of 90 percent of the optimal alignment score, we find that 98.3 percent of contours contain correctly updated paths. We also find that our method consumes only 25.36 percent of the runtime cost of sparse dynamic programming (sDP) method, and to only 2.55 percent of that of a normal dynamic programming with the Smith-Waterman algorithm. PMID:19875856

  16. Two Improved Digital Signature Schemes

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    In this paper, two improved digital signature schemes are presented based on the design of directed signaturescheme [3]. The peculiarity of the system is that only if the scheme is specific recipient, the signature is authenticated.Since the scheme adds the screen of some information parameters, the difficulty of deciphered keys and the security ofdigital signature system are increased.

  17. Bonus schemes and trading activity

    NARCIS (Netherlands)

    Pikulina, E.S.; Renneboog, L.D.R.; ter Horst, J.R.; Tobler, P.N.

    2014-01-01

    Little is known about how different bonus schemes affect traders' propensity to trade and which bonus schemes improve traders' performance. We study the effects of linear versus threshold bonus schemes on traders' behavior. Traders buy and sell shares in an experimental stock market on the basis of

  18. A New Deferred Sentencing Scheme

    Directory of Open Access Journals (Sweden)

    N. K. Chakravarti

    1968-10-01

    Full Text Available A new deferred sentencing scheme resembling double sampling scheme has been suggested from viewpoint of operational and administrative. It is recommended particularly when the inspection is destructive. The O.C. curves of the scheme for two sample sizes of 5 and 10 have been given.

  19. Shuttle onboard IMU alignment methods

    Science.gov (United States)

    Henderson, D. M.

    1976-01-01

    The current approach to the shuttle IMU alignment is based solely on the Apollo Deterministic Method. This method is simple, fast, reliable and provides an accurate estimate for the present cluster to mean of 1,950 transformation matrix. If four or more star sightings are available, the application of least squares analysis can be utilized. The least squares method offers the next level of sophistication to the IMU alignment solution. The least squares method studied shows that a more accurate estimate for the misalignment angles is computed, and the IMU drift rates are a free by-product of the analysis. Core storage requirements are considerably more; estimated 20 to 30 times the core required for the Apollo Deterministic Method. The least squares method offers an intermediate solution utilizing as much data that is available without a complete statistical analysis as in Kalman filtering.

  20. Aligning seminars with Bologna requirements

    DEFF Research Database (Denmark)

    Lueg, Klarissa; Lueg, Rainer; Lauridsen, Ole

    2015-01-01

    Changes in public policy, such as the Bologna Process, require students to be equipped with multifunctional competencies to master relevant tasks in unfamiliar situations. Achieving this goal might imply a change in many curricula toward deeper learning. As a didactical means to achieve deep...... learning results, the authors suggest reciprocal peer tutoring (RPT); as a conceptual framework the authors suggest the SOLO (Structure of Observed Learning Outcomes) taxonomy and constructive alignment as suggested by Biggs and Tang. Our study presents results from the introduction of RPT in a large...... course. The authors find that RPT produces satisfying learning outcomes, active students, and ideal constructive alignments of the seminar content with the exam, the intended learning outcomes, and the requirements of the Bologna Process. Our data, which comprise surveys and evaluations from both faculty...

  1. Prism Window for Optical Alignment

    Science.gov (United States)

    Tang, Hong

    2008-01-01

    A prism window has been devised for use, with an autocollimator, in aligning optical components that are (1) required to be oriented parallel to each other and/or at a specified angle of incidence with respect to a common optical path and (2) mounted at different positions along the common optical path. The prism window can also be used to align a single optical component at a specified angle of incidence. Prism windows could be generally useful for orienting optical components in manufacture of optical instruments. "Prism window" denotes an application-specific unit comprising two beam-splitter windows that are bonded together at an angle chosen to obtain the specified angle of incidence.

  2. Aligned mesoporous architectures and devices.

    Energy Technology Data Exchange (ETDEWEB)

    Brinker, C. Jeffrey; Lu, Yunfeng (University of California Los Angeles, Los Angeles, CA)

    2011-03-01

    This is the final report for the Presidential Early Career Award for Science and Engineering - PECASE (LDRD projects 93369 and 118841) awarded to Professor Yunfeng Lu (Tulane University and University of California-Los Angeles). During the last decade, mesoporous materials with tunable periodic pores have been synthesized using surfactant liquid crystalline as templates, opening a new avenue for a wide spectrum of applications. However, the applications are somewhat limited by the unfavorabe pore orientation of these materials. Although substantial effort has been devoted to align the pore channels, fabrication of mesoporous materials with perpendicular pore channels remains challenging. This project focused on fabrication of mesoporous materials with perpendicularly aligned pore channels. We demonstrated structures for use in water purification, separation, sensors, templated synthesis, microelectronics, optics, controlled release, and highly selective catalysts.

  3. Reminiscences about numerical schemes

    CERN Document Server

    Godunov, Sergei K

    2008-01-01

    This preprint appeared firstly in Russian in 1997. Some truncated versions of this preprint were published in English and French, here a fully translated version is presented. The translation in English was done by O. V. Feodoritova and V. Deledicque to whom I express my gratitude. In the present paper I will describe how the first variant of the Godunov's scheme has been elaborated in 1953-1954 and tell about all modifications realized by myself (until 1969) and the group of scientists from the Institute of Applied Mathematics in Moscow (which has become the M.V.Keldysh Institute of Applied Mathematics).

  4. CONSIDERATIONS CONCERNING GUARANTEE SCHEMES

    Directory of Open Access Journals (Sweden)

    EMILIA CLIPICI

    2013-05-01

    Full Text Available When a large withdrawal from banks occurs, customers withdraw their deposits, so banks are likely to go bankrupt because of liquidity problems. There are several mechanisms that allow the banking system to avoid the phenomenon of massive withdrawals from banks. The most effective one is the deposit insurance. The deposit insurance is seen primarily as a means of protecting depositors of credit institutions, and secondly as a means of ensuring the stability of the banking system. This article described deposit guarantee scheme in Romania and other country.

  5. Optimized entanglement purification schemes for modular based quantum computers

    Science.gov (United States)

    Krastanov, Stefan; Jiang, Liang

    The choice of entanglement purification scheme strongly depends on the fidelities of quantum gates and measurements, as well as the imperfection of initial entanglement. For instance, the purification scheme optimal at low gate fidelities may not necessarily be the optimal scheme at higher gate fidelities. We employ an evolutionary algorithm that efficiently optimizes the entanglement purification circuit for given system parameters. Such optimized purification schemes will boost the performance of entanglement purification, and consequently enhance the fidelity of teleportation-based non-local coupling gates, which is an indispensible building block for modular-based quantum computers. In addition, we study how these optimized purification schemes affect the resource overhead caused by error correction in modular based quantum computers.

  6. Intrinsic Galaxy Alignments and Weak Gravitational Lensing

    CERN Document Server

    Heavens, A F

    2001-01-01

    Gravitational lensing causes background galaxy images to become aligned, and the statistical characteristics of the image alignments can then be used to constrain the power spectrum of mass fluctuations. Analyses of gravitational lensing assume that intrinsic galaxy alignments are negligible, but if this assumption does not hold, then the interpretation of image alignments will be in error. As gravitational lensing experiments become more ambitious and seek very low-level alignments arising from lensing by large-scale structure, it becomes more important to estimate the level of intrinsic alignment in the galaxy population. In this article, I review the cluster of independent theoretical studies of this issue, as well as the current observational status. Theoretically, the calculation of intrinsic alignments is by no means straightforward, but some consensus has emerged from the existing works, despite each making very different assumptions. This consensus is that a) intrinsic alignments are a small but non-n...

  7. RDF Graph Alignment with Bisimulation

    OpenAIRE

    Buneman, Peter; Staworko, Sławek

    2016-01-01

    We investigate the problem of aligning two RDF databases, an essential problem in understanding the evolution of ontologies. Our approaches address three fundamental challenges: 1) the use of "blank" (null) names, 2) ontology changes in which different names are used to identify the same entity, and 3) small changes in the data values as well as small changes in the graph structure of the RDF database. We propose approaches inspired by the classical notion of graph bisimulation and extend the...

  8. High anisotropy of flow-aligned bicellar membrane systems

    KAUST Repository

    Kogan, Maxim

    2013-10-01

    In recent years, multi-lipid bicellar systems have emerged as promising membrane models. The fast orientational diffusion and magnetic alignability made these systems very attractive for NMR investigations. However, their alignment was so far achieved with a strong magnetic field, which limited their use with other methods that require macroscopic orientation. Recently, it was shown that bicelles could be aligned also by shear flow in a Couette flow cell, making it applicable to structural and biophysical studies by polarized light spectroscopy. Considering the sensitivity of this lipid system to small variations in composition and physicochemical parameters, efficient use of such a flow-cell method with coupled techniques will critically depend on the detailed understanding of how the lipid systems behave under flow conditions. In the present study we have characterized the flow alignment behavior of the commonly used dimyristoyl phosphatidylcholine/dicaproyl phosphatidylcholine (DMPC/DHPC) bicelle system, for various temperatures, lipid compositions, and lipid concentrations. We conclude that at optimal flow conditions the selected bicellar systems can produce the most efficient flow alignment out of any lipid systems used so far. The highest degree of orientation of DMPC/DHPC samples is noticed in a narrow temperature interval, at a practical temperature around 25 C, most likely in the phase transition region characterized by maximum sample viscosity. The change of macroscopic orientation factor as function of the above conditions is now described in detail. The increase in macroscopic alignment observed for bicelles will most likely allow recording of higher resolution spectra on membrane systems, which provide deeper structural insight and analysis into properties of biomolecules interacting with solution phase lipid membranes. © 2013 Elsevier Ireland Ltd.

  9. A hybrid TIM-NOMA scheme for the Broadcast Channel

    Directory of Open Access Journals (Sweden)

    V. Kalokidou

    2015-07-01

    Full Text Available Future mobile communication networks will require enhanced network efficiency and reduced system overhead. Research on Blind Interference Alignment and Topological Interference Management (TIM has shown that optimal Degrees of Freedom can be achieved, in the absence of Channel State Information at the transmitters. Moreover, the recently emerged Non- Orthogonal Multiple Access (NOMA scheme suggests a different multiple access approach, compared to the orthogonal methods employed in 4G, resulting in high capacity gains. Our contribution is a hybrid TIM-NOMA scheme in K-user cells, where users are divided into T groups. By superimposing users in the power domain, we introduce a two-stage decoding process, managing “inter-group” interference based on the TIM principles, and “intra-group” interference based on Successful Interference Cancellation, as proposed by NOMA. We show that the hybrid scheme can improve the sum rate by at least 100% compared to Time Division Multiple Access, for high SNR values.

  10. Direct Uniaxial Alignment of a Donor-Acceptor Semiconducting Polymer Using Single-Step Solution Shearing.

    Science.gov (United States)

    Shaw, Leo; Hayoz, Pascal; Diao, Ying; Reinspach, Julia Antonia; To, John W F; Toney, Michael F; Weitz, R Thomas; Bao, Zhenan

    2016-04-13

    The alignment of organic semiconductors (OSCs) in the active layers of electronic devices can confer desirable properties, such as enhanced charge transport properties due to better ordering, charge transport anisotropy for reduced device cross-talk, and polarized light emission or absorption. The solution-based deposition of highly aligned small molecule OSCs has been widely demonstrated, but the alignment of polymeric OSCs in thin films deposited directly from solution has typically required surface templating or complex pre- or postdeposition processing. Therefore, single-step solution processing and the charge transport enhancement afforded by alignment continue to be attractive. We report here the use of solution shearing to tune the degree of alignment in poly(diketopyrrolopyrrole-terthiophene) thin films by controlling the coating speed. A maximum dichroic ratio of ∼7 was achieved on unpatterned substrates without any additional pre- or postdeposition processing. The degree of polymer alignment was found to be a competition between the shear alignment of polymer chains in solution and the complex thin film drying process. Contrary to previous reports, no charge transport anisotropy was observed because of the small crystallite size relative to the channel length, a meshlike morphology, and the likelihood of increased grain boundaries in the direction transverse to coating. In fact, the lack of aligned morphological structures, coupled with observed anisotropy in X-ray diffraction data, suggests the alignment of polymer molecules in both the crystalline and the amorphous regions of the films. The shear speed at which maximum dichroism is achieved can be controlled by altering deposition parameters such as temperature and substrate treatment. Modest changes in molecular weight showed negligible effects on alignment, while longer polymer alkyl side chains were found to reduce the degree of alignment. This work demonstrates that solution shearing can be used

  11. Structural analysis of aligned RNAs.

    Science.gov (United States)

    Voss, Björn

    2006-01-01

    The knowledge about classes of non-coding RNAs (ncRNAs) is growing very fast and it is mainly the structure which is the common characteristic property shared by members of the same class. For correct characterization of such classes it is therefore of great importance to analyse the structural features in great detail. In this manuscript I present RNAlishapes which combines various secondary structure analysis methods, such as suboptimal folding and shape abstraction, with a comparative approach known as RNA alignment folding. RNAlishapes makes use of an extended thermodynamic model and covariance scoring, which allows to reward covariation of paired bases. Applying the algorithm to a set of bacterial trp-operon leaders using shape abstraction it was able to identify the two alternating conformations of this attenuator. Besides providing in-depth analysis methods for aligned RNAs, the tool also shows a fairly well prediction accuracy. Therefore, RNAlishapes provides the community with a powerful tool for structural analysis of classes of RNAs and is also a reasonable method for consensus structure prediction based on sequence alignments. RNAlishapes is available for online use and download at http://rna.cyanolab.de. PMID:17020924

  12. Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment

    International Nuclear Information System (INIS)

    Searches through biological databases provide the primary motivation for studying sequence alignment statistics. Other motivations include physical models of annealing processes or mathematical similarities to, e.g., first-passage percolation and interacting particle systems. Here, we investigate sequence alignment statistics, partly to explore two general mathematical methods. First, we model the global alignment of random sequences heuristically with Markov additive processes. In sequence alignment, the heuristic suggests a numerical acceleration scheme for simulating an important asymptotic parameter (the Gumbel scale parameter λ). The heuristic might apply to similar mathematical theories. Second, we extract the asymptotic parameter λ from simulation data with the statistical technique of robust regression. Robust regression is admirably suited to 'asymptotic regression' and deserves to be better known for it

  13. Hardware Acceleration of Bioinformatics Sequence Alignment Applications

    OpenAIRE

    Hasan, L.

    2011-01-01

    Biological sequence alignment is an important and challenging task in bioinformatics. Alignment may be defined as an arrangement of two or more DNA or protein sequences to highlight the regions of their similarity. Sequence alignment is used to infer the evolutionary relationship between a set of protein or DNA sequences. An accurate alignment can provide valuable information for experimentation on the newly found sequences. It is indispensable in basic research as well as in practical applic...

  14. Inferring comprehensible business/ICT alignment rules.

    OpenAIRE

    Cumps, Bjorn; Martens, David; De Backer, Manu; Haesen, Raf; Viaene, Stijn; Dedene, Guido; Baesens, Bart; Snoeck, Monique

    2009-01-01

    We inferred business rules for business/ICT alignment by applying a novel rule induction algorithm on a data set containing rich alignment information polled from 641 organisations in 7 European countries. The alignment rule set was created using AntMiner+, a rule induction technique with a reputation of inducing accurate, comprehensible, and intuitive predictive models from data. Our data set consisted of 18 alignment practices distilled from an analysis of relevant publications and validate...

  15. Alignment of iron nanoparticles in a magnetic field due to shape anisotropy

    Science.gov (United States)

    Radhakrishnan, B.; Nicholson, D. M.; Eisenbach, M.; Parish, C.; Ludtka, G. M.; Rios, O.

    2015-11-01

    During high magnetic field solidification processing there is evidence for the alignment of nanoscale metallic particles with elongated morphologies that nucleate from a liquid metal. Such alignment occurs well above the Curie temperature of the particle where the magneto-crystalline anisotropy energy and exchange energy contributions are negligible. The main driving force for alignment is the magnetic shape anisotropy. Current understanding of the phenomenon is not adequate to quantify the effect of particle size, aspect ratio, temperature and the magnetic field on particle alignment. We demonstrate a Monte Carlo approach coupled with a scaling law for the dipole-dipole interaction energy as a function of the particle size to identify the conditions under which such alignment is possible.

  16. Coupled transfers; Transferts couples

    Energy Technology Data Exchange (ETDEWEB)

    Nicolas, X.; Lauriat, G.; Jimenez-Rondan, J. [Universite de Marne-la-Vallee, Lab. d' Etudes des Transferts d' Energie et de Matiere (LETEM), 77 (France); Bouali, H.; Mezrhab, A. [Faculte des Sciences, Dept. de Physique, Lab. de Mecanique et Energetique, Oujda (Morocco); Abid, C. [Ecole Polytechnique Universitaire de Marseille, IUSTI UMR 6595, 13 Marseille (France); Stoian, M.; Rebay, M.; Lachi, M.; Padet, J. [Faculte des Sciences, Lab. de Thermomecanique, UTAP, 51 - Reims (France); Mladin, E.C. [Universitaire Polytechnique Bucarest, Faculte de Genie Mecanique, Bucarest (Romania); Mezrhab, A. [Faculte des Sciences, Lab. de Mecanique et Energetique, Dept. de Physique, Oujda (Morocco); Abid, C.; Papini, F. [Ecole Polytechnique, IUSTI, 13 - Marseille (France); Lorrette, C.; Goyheneche, J.M.; Boechat, C.; Pailler, R. [Laboratoire des Composites ThermoStructuraux, UMR 5801, 33 - Pessac (France); Ben Salah, M.; Askri, F.; Jemni, A.; Ben Nasrallah, S. [Ecole Nationale d' Ingenieurs de Monastir, Lab. d' Etudes des Systemes Thermiques et Energetiques (Tunisia); Grine, A.; Desmons, J.Y.; Harmand, S. [Laboratoire de Mecanique et d' Energetique, 59 - Valenciennes (France); Radenac, E.; Gressier, J.; Millan, P. [ONERA, 31 - Toulouse (France); Giovannini, A. [Institut de Mecanique des Fluides de Toulouse, 31 (France)

    2005-07-01

    This session about coupled transfers gathers 30 articles dealing with: numerical study of coupled heat transfers inside an alveolar wall; natural convection/radiant heat transfer coupling inside a plugged and ventilated chimney; finite-volume modeling of the convection-conduction coupling in non-stationary regime; numerical study of the natural convection/radiant heat transfer coupling inside a partitioned cavity; modeling of the thermal conductivity of textile reinforced composites: finite element homogenization on a full periodical pattern; application of the control volume method based on non-structured finite elements to the problems of axisymmetrical radiant heat transfers in any geometries; modeling of convective transfers in transient regime on a flat plate; a conservative method for the non-stationary coupling of aero-thermal engineering codes; measurement of coupled heat transfers (forced convection/radiant transfer) inside an horizontal duct; numerical simulation of the combustion of a water-oil emulsion droplet; numerical simulation study of heat and mass transfers inside a reactor for nano-powders synthesis; reduction of a combustion and heat transfer model of a direct injection diesel engine; modeling of heat transfers inside a knocking operated spark ignition engine; heat loss inside an internal combustion engine, thermodynamical and flamelet model, composition effects of CH{sub 4}H{sub 2} mixtures; experimental study and modeling of the evolution of a flame on a solid fuel; heat transfer for laminar subsonic jet of oxygen plasma impacting an obstacle; hydrogen transport through a A-Si:H layer submitted to an hydrogen plasma: temperature effects; thermal modeling of the CO{sub 2} laser welding of a magnesium alloy; radiant heat transfer inside a 3-D environment: application of the finite volume method in association with the CK model; optimization of the infrared baking of two types of powder paints; optimization of the emission power of an infrared

  17. Secure mediated certificateless signature scheme

    Institute of Scientific and Technical Information of China (English)

    YANG Chen; MA Wen-ping; WANG Xin-mei

    2007-01-01

    Ju et al proposed a certificateless signature scheme with instantaneous revocation by introducing security mediator (SEM) mechanism. This article presents a detailed cryptoanalysis of this scheme and shows that, in their proposed scheme, once a valid signature has been produced, the signer can recover his private key information and the instantaneous revocation property will be damaged. Furthermore, an improved mediated signature scheme, which can eliminate these disadvantages, is proposed, and security proof of the improved scheme under elliptic curve factorization problem (ECFP) assumption and bilinear computational diffie-hellman problem (BCDH) assumption is also proposed.

  18. Ultrafast electron diffraction from aligned molecules

    Energy Technology Data Exchange (ETDEWEB)

    Centurion, Martin [Univ. of Nebraska, Lincoln, NE (United States)

    2015-08-17

    The aim of this project was to record time-resolved electron diffraction patterns of aligned molecules and to reconstruct the 3D molecular structure. The molecules are aligned non-adiabatically using a femtosecond laser pulse. A femtosecond electron pulse then records a diffraction pattern while the molecules are aligned. The diffraction patterns are then be processed to obtain the molecular structure.

  19. Beam alignment system for laser welding system

    International Nuclear Information System (INIS)

    The patent describes a beam alignment system for laser welding work pieces, such as fuel rod grids for nuclear fuel assemblies. The apparatus for performing various laser-machining comprises a beam alignment system including alignment target means, as well as means for emitting, directing and focusing the laser beam. (U.K.)

  20. Alignment of lower-limb prostheses.

    Science.gov (United States)

    Zahedi, M S; Spence, W D; Solomonidis, S E; Paul, J P

    1986-04-01

    Alignment of a prosthesis is defined as the position of the socket relative to the other prosthetic components of the limb. During dynamic alignment the prosthetist, using subjective judgment and feedback from the patient, aims to achieve the most suitable limb geometry for best function and comfort. Until recently it was generally believed that a patient could only be satisfied with a unique "optimum alignment." The purpose of this systematic study of lower-limb alignment parameters was to gain an understanding of the factors that make a limb configuration or optimum alignment, acceptable to the patient, and to obtain a measure of the variation of this alignment that would be acceptable to the amputee. In this paper, the acceptable range of alignments for 10 below- and 10 above-knee amputees are established. Three prosthetists were involved in the majority of the 183 below-knee and 100 above-knee fittings, although several other prosthetists were also involved. The effects of each different prosthetist on the established range of alignment for each patient are reported to be significant. It is now established that an amputee can tolerate several alignments ranging in some parameters by as much as 148 mm in shifts and 17 degrees in tilts. This paper describes the method of defining and measuring the alignment of lower-limb prostheses. It presents quantitatively established values for bench alignment position and the range of adjustment required for incorporation into the design of new alignment units.

  1. Hardware Acceleration of Bioinformatics Sequence Alignment Applications

    NARCIS (Netherlands)

    Hasan, L.

    2011-01-01

    Biological sequence alignment is an important and challenging task in bioinformatics. Alignment may be defined as an arrangement of two or more DNA or protein sequences to highlight the regions of their similarity. Sequence alignment is used to infer the evolutionary relationship between a set of pr

  2. Shift dynamics of capillary self-alignment

    NARCIS (Netherlands)

    Arutinov, G.; Mastrangeli, M.; Smits, E.C.P.; Heck, G.V.; Schoo, H.F.M.; Toonder, J.J.M. den; Dietzel, A.H.

    2014-01-01

    This paper describes the dynamics of capillary self-alignment of components with initial shift offsets from matching receptor sites. The analysis of the full uniaxial self-alignment dynamics of foil-based mesoscopic dies from pre-alignment to final settling evidenced three distinct, sequential regim

  3. Inferring comprehensible business/ICT alignment rules

    NARCIS (Netherlands)

    B. Cumps; D. Martens; M. De Backer; R. Haesen; S. Viaene; G. Dedene; B. Baesens; M. Snoeck

    2009-01-01

    We inferred business rules for business/ICT alignment by applying a novel rule induction algorithm on a data set containing rich alignment information polled from 641 organisations in 7 European countries. The alignment rule set was created using AntMiner+, a rule induction technique with a reputati

  4. OPERATIONAL MODAL ANALYSIS SCHEMES USING CORRELATION TECHNIQUE

    Institute of Scientific and Technical Information of China (English)

    Zheng Min; Shen Fan; Chen Huaihai

    2005-01-01

    For some large-scale engineering structures in operating conditions, modal parameters estimation must base itself on response-only data. This problem has received a considerable amount of attention in the past few years. It is well known that the cross-correlation function between the measured responses is a sum of complex exponential functions of the same form as the impulse response function of the original system. So this paper presents a time-domain operating modal identification global scheme and a frequency-domain scheme from output-only by coupling the cross-correlation function with conventional modal parameter estimation. The outlined techniques are applied to an airplane model to estimate modal parameters from response-only data.

  5. Crossed crystal scheme for fs-pulsed entangled photon generation in ppKTP

    OpenAIRE

    Scheidl, Thomas; Tiefenbacher, Felix; Prevedel, Robert; Steinlechner, Fabian; Ursin, Rupert; Zeilinger, Anton

    2014-01-01

    We demonstrate a novel scheme for femto-second pulsed spontaneous parametric down-conversion in periodically poled KTP crystals. Our scheme is based on a crossed crystal configuration with collinear quasi-phase-matching. The non-degenerate photon pairs are split in a fiber-based wavelength division multiplexer. The source is easier to align than common pulsed sources based on bulk BBO crystals and exhibits high-quality polarization entanglement as well as non-classical interference capabiliti...

  6. How the cosmic web induces intrinsic alignments of galaxies

    CERN Document Server

    Codis, Sandrine; Pichon, Christophe; Devriendt, Julien; Slyz, Adrianne

    2014-01-01

    Intrinsic alignments are believed to be a major source of systematics for future generation of weak gravitational lensing surveys like Euclid or LSST. Direct measurements of the alignment of the projected light distribution of galaxies in wide field imaging data seem to agree on a contamination at a level of a few per cent of the shear correlation functions, although the amplitude of the effect depends on the population of galaxies considered. Given this dependency, it is difficult to use dark matter-only simulations as the sole resource to predict and control intrinsic alignments. We report here estimates on the level of intrinsic alignment in the cosmological hydrodynamical simulation Horizon-AGN that could be a major source of systematic errors in weak gravitational lensing measurements. In particular, assuming that the spin of galaxies is a good proxy for their ellipticity, we show how those spins are spatially correlated and how they couple to the tidal field in which they are embedded. We also present t...

  7. The Relationship Between Foot and Pelvic Alignment While Standing

    Directory of Open Access Journals (Sweden)

    Khamis Sam

    2015-06-01

    Full Text Available A normal motion and segmental interrelationship has been determined as a significant factor in normal function. Yet, the relationship between distal segments and pelvic alignment needs further investigation. The aim of this study was to investigate the interrelationship between distal and proximal lower extremity segments while standing and during induced feet hyperpronation. Changes in alignment of the pelvis and lower extremities were measured at a gait laboratory using the VICON 612 computerized motion analysis system. Thirty-five healthy volunteer subjects were recruited. Four randomized repeated-measure standing modes were used: standing directly on the floor and then on three wedges angled at 10°, 15° and 20° to induce bilateral hyperpronation for 20 seconds. A significant (p<0.05 bi-variate relationship was found between the anterior pelvic tilt and thigh internal rotation, in all four standing positions (.41≤r≤.46, in all p<0.014. A combined effect of rotational alignment between segments and the cumulative effect of foot hyperpronation on pelvic tilt revealed that only the shank significantly affected pelvic alignment, acting as a mediator between a foot and a thigh with the thigh having a crude significant effect on the pelvis. When internal rotation of the shank occurs, calcaneal eversion couples with thigh internal rotation and anterior pelvic tilt. It can be concluded that in response to induced hyperpronation, the shank is a pivotal segment in postural adjustment.

  8. Shape-based discriminative analysis of combined bilateral hippocampi using multiple object alignment

    Science.gov (United States)

    Shen, Li; Makedon, Fillia; Saykin, Andrew

    2004-05-01

    Shape analysis of hippocampi in schizophrenia has been preformed previously using the spherical harmonic SPHARM description. In these studies, the left and right hippocampi are aligned independently and the spatial relation between them is not explored. This paper presents a new SPHARM-based technique which examines not only the individual shape information of the two hippocampi but also the spatial relation between them. The left and right hippocampi are treated as a single shape configuration. A ploy-shape alignment algorithm is developed for aligning configurations of multiple SPHARM surfaces as follows: (1) the total volume is normalized; (2) the parameter space is aligned for creating the surface correspondence; (3) landmarks are created by a uniform sampling of multiple surfaces for each configuration; (4) a quaternion-based algorithm is employed to align each landmark representation to the mean configuration through the least square rotation and translation iteratively until the mean converges. After applying the poly-shape alignment algorithm, a point distribution model is applied to aligned landmarks for feature extraction. Classification is performed using Fisher's linear discriminant with an effective feature selection scheme. Applying the above procedure to our hippocampal data (14 controls versus 25 schizophrenics, all right-handed males), we achieve the best cross-validation accuracy of 92%, supporting the idea that the whole shape configuration of the two hippocampi provides valuable information in detecting schizophrenia. The results of an ROC analysis and a visualization of discriminative patterns are also included.

  9. A hybrid retention time alignment algorithm for SWATH-MS data.

    Science.gov (United States)

    Wu, Long; Amon, Sabine; Lam, Henry

    2016-08-01

    Recently, data-independent acquisition (DIA) MS has gained popularity as a qualitative-quantitative workflow for proteomics. One outstanding problem in the analysis of DIA-MS data is alignment of chromatographic retention times across multiple samples, which facilitates peptide identification and accurate quantification. Here, we present a novel hybrid (profile-based and feature-based) algorithm for LC-MS alignment and test it on sequential windowed acquisition of all theoretical fragment ion mass spectra (SWATH) (a type of DIA) data. Our algorithm uses a profile-based dynamic time warping algorithm to obtain a coarse alignment and corrects large retention time shifts, and then uses a feature-based bipartite matching algorithm to match feature to feature at a fine scale. We evaluated our method by comparing our aligned feature pairs to peptide identification results of pseudo-MS2 spectra exported by DIA-Umpire, a recently reported tool for deconvoluting DIA-MS data. We proposed that our method can be used to align DIA-MS data prior to identification, and the alignment can be used to delete noise peaks or screen for differentially changed features. We found that a simple alignment-enabled denoising scheme can reduce the number of pseudo-MS2 spectra exported by DIA-Umpire by up to around 40%, while retaining a comparable number of identifications. Finally, we demonstrated the utility of our tool for accurate label-free relative quantification across multiple SWATH runs.

  10. Interference Alignment-based Precoding and User Selection with Limited Feedback in Two-cell Downlink Multi-user MIMO Systems

    Directory of Open Access Journals (Sweden)

    Yin Zhu

    2016-05-01

    Full Text Available Interference alignment (IA is a new approach to address interference in modern multiple-input multiple-out (MIMO cellular networks in which interference is an important factor that limits the system throughput. System throughput in most IA implementation schemes is significantly improved only with perfect channel state information and in a high signal-to-noise ratio (SNR region. Designing a simple IA scheme for the system with limited feedback and investigating system performance at a low-to-medium SNR region is important and practical. This paper proposed a precoding and user selection scheme based on partial interference alignment in two-cell downlink multi-user MIMO systems under limited feedback. This scheme aligned inter-cell interference to a predefined direction by designing user’s receive antenna combining vectors. A modified singular value decomposition (SVD-based beamforming method and a corresponding user-selection algorithm were proposed for the system with low rate limited feedback to improve sum rate performance. Simulation results show that the proposed scheme achieves a higher sum rate than traditional schemes without IA. The modified SVD-based beamforming scheme is also superior to the traditional zero-forcing beamforming scheme in low-rate limited feedback systems. The proposed partial IA scheme does not need to collaborate between transmitters and joint design between the transmitter and the users. The scheme can be implemented with low feedback overhead in current MIMO cellular networks.

  11. RevTrans: multiple alignment of coding DNA from aligned amino acid sequences

    DEFF Research Database (Denmark)

    Wernersson, Rasmus; Pedersen, Anders Gorm

    2003-01-01

    proteins. It is therefore preferable to align coding DNA at the amino acid level and it is for this purpose we have constructed the program RevTrans. RevTrans constructs a multiple DNA alignment by: (i) translating the DNA; (ii) aligning the resulting peptide sequences; and (iii) building a multiple DNA...... alignment by 'reverse translation' of the aligned protein sequences. In the resulting DNA alignment, gaps occur in groups of three corresponding to entire codons, and analogous codon positions are therefore always lined up. These features are useful when constructing multiple DNA alignments for phylogenetic...

  12. CSR schemes in agribusiness

    DEFF Research Database (Denmark)

    Pötz, Katharina Anna; Haas, Rainer; Balzarova, Michaela

    2013-01-01

    of schemes that can be categorized on focus areas, scales, mechanisms, origins, types and commitment levels. Research limitations/implications – The findings contribute to conceptual and empirical research on existing models to compare and analyse CSR standards. Sampling technique and depth of analysis limit...... this research, but the authors offer insights into patterns of CSR standard development in agribusiness and point to important research avenues. Practical implications – These findings can help agribusiness managers to select and analyse CSR standards and other forms of CSR guidance. Social implications...... – Standard and guidance setting activities can be expected to have real-life effects on CSR outcomes. These effects need to be better understood by policy makers and stakeholders. The authors' meta-analysis contributes to further research on who or what influences standard development. Originality...

  13. Galaxy alignments: Theory, modelling and simulations

    CERN Document Server

    Kiessling, Alina; Joachimi, Benjamin; Kirk, Donnacha; Kitching, Thomas D; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Brown, Michael L; Rassat, Anais

    2015-01-01

    The shapes of galaxies are not randomly oriented on the sky. During the galaxy formation and evolution process, environment has a strong influence, as tidal gravitational fields in large-scale structure tend to align the shapes and angular momenta of nearby galaxies. Additionally, events such as galaxy mergers affect the relative alignments of galaxies throughout their history. These "intrinsic galaxy alignments" are known to exist, but are still poorly understood. This review will offer a pedagogical introduction to the current theories that describe intrinsic galaxy alignments, including the apparent difference in intrinsic alignment between early- and late-type galaxies and the latest efforts to model them analytically. It will then describe the ongoing efforts to simulate intrinsic alignments using both $N$-body and hydrodynamic simulations. Due to the relative youth of this field, there is still much to be done to understand intrinsic galaxy alignments and this review summarises the current state of the ...

  14. Aligning Sequences by Minimum Description Length

    Directory of Open Access Journals (Sweden)

    John S. Conery

    2008-01-01

    Full Text Available This paper presents a new information theoretic framework for aligning sequences in bioinformatics. A transmitter compresses a set of sequences by constructing a regular expression that describes the regions of similarity in the sequences. To retrieve the original set of sequences, a receiver generates all strings that match the expression. An alignment algorithm uses minimum description length to encode and explore alternative expressions; the expression with the shortest encoding provides the best overall alignment. When two substrings contain letters that are similar according to a substitution matrix, a code length function based on conditional probabilities defined by the matrix will encode the substrings with fewer bits. In one experiment, alignments produced with this new method were found to be comparable to alignments from CLUSTALW. A second experiment measured the accuracy of the new method on pairwise alignments of sequences from the BAliBASE alignment benchmark.

  15. Alignment method for solar collector arrays

    Science.gov (United States)

    Driver, Jr., Richard B

    2012-10-23

    The present invention is directed to an improved method for establishing camera fixture location for aligning mirrors on a solar collector array (SCA) comprising multiple mirror modules. The method aligns the mirrors on a module by comparing the location of the receiver image in photographs with the predicted theoretical receiver image location. To accurately align an entire SCA, a common reference is used for all of the individual module images within the SCA. The improved method can use relative pixel location information in digital photographs along with alignment fixture inclinometer data to calculate relative locations of the fixture between modules. The absolute locations are determined by minimizing alignment asymmetry for the SCA. The method inherently aligns all of the mirrors in an SCA to the receiver, even with receiver position and module-to-module alignment errors.

  16. Multiscale peak alignment for chromatographic datasets.

    Science.gov (United States)

    Zhang, Zhi-Min; Liang, Yi-Zeng; Lu, Hong-Mei; Tan, Bin-Bin; Xu, Xiao-Na; Ferro, Miguel

    2012-02-01

    Chromatography has been extensively applied in many fields, such as metabolomics and quality control of herbal medicines. Preprocessing, especially peak alignment, is a time-consuming task prior to the extraction of useful information from the datasets by chemometrics and statistics. To accurately and rapidly align shift peaks among one-dimensional chromatograms, multiscale peak alignment (MSPA) is presented in this research. Peaks of each chromatogram were detected based on continuous wavelet transform (CWT) and aligned against a reference chromatogram from large to small scale gradually, and the aligning procedure is accelerated by fast Fourier transform cross correlation. The presented method was compared with two widely used alignment methods on chromatographic dataset, which demonstrates that MSPA can preserve the shapes of peaks and has an excellent speed during alignment. Furthermore, MSPA method is robust and not sensitive to noise and baseline. MSPA was implemented and is available at http://code.google.com/p/mspa. PMID:22222564

  17. Shafting Alignment Computing Method of New Multibearing Rotor System under Specific Installation Requirement

    Directory of Open Access Journals (Sweden)

    Qian Chen

    2016-01-01

    Full Text Available The shafting of large steam turbine generator set is composed of several rotors which are connected by couplings. The computing method of shafting with different structure under specific installation requirement is studied in this paper. Based on three-moment equation, shafting alignment mathematical model is established. The computing method of bearing elevations and loads under corresponding installation requirements, where bending moment of each coupling is zero and there exist preset sag and gap in some couplings, is proposed, respectively. Bearing elevations and loads of shafting with different structure under specific installation requirement are calculated; calculation results are compared with installation data measured on site which verifies the validity and accuracy of the proposed shafting alignment computing method. The above work provides a reliable approach to analyze shafting alignment and could guide installation on site.

  18. Pupil Alignment Measuring Technique and Alignment Reference for Instruments or Optical Systems

    Science.gov (United States)

    Hagopian, John G.

    2010-01-01

    A technique was created to measure the pupil alignment of instruments in situ by measuring calibrated pupil alignment references (PARs) in instruments. The PAR can also be measured using an alignment telescope or an imaging system. PAR allows the verification of the science instrument (SI) pupil alignment at the integrated science instrument module (ISIM) level of assembly at ambient and cryogenic operating temperature. This will allow verification of the ISIM+SI alignment, and provide feedback to realign the SI if necessary.

  19. NON-ALIGNEMENT IN AFRICA

    Directory of Open Access Journals (Sweden)

    G. Jacobs

    2012-02-01

    Full Text Available The first indications to the Western world that African non-alignment had achieved conscious political form became apparent only in the late 1940's. This strand of thought within the tapestry of Africanism reached its zenith with the declarations of Kwame Nkrumah, Jomo Kenyatta and Julius Nyerere in the years after the Pan-African Congress in Manchester in 1945. The causes of the movement go back far beyond the first official expressions of an African solidarity in the 1940's. As a mature expression of group attitudes tqwards foreign pol icy, nonalignment can be traced back to the roots of African nationalism.

  20. The Cluster Substructure - Alignment Connection

    CERN Document Server

    Plionis, M

    2002-01-01

    Using the APM cluster data we investigate whether the dynamical status of clusters is related to the large-scale structure of the Universe. We find that cluster substructure is strongly correlated with the tendency of clusters to be aligned with their nearest neighbour and in general with the nearby clusters that belong to the same supercluster. Furthermore, dynamically young clusters are more clustered than the overall cluster population. These are strong indications that cluster develop in a hierarchical fashion by anisotropy merging along the large-scale filamentary superclusters within which they are embedded.

  1. The Substructure-Alignment Connection

    CERN Document Server

    Plionis, M; Plionis, Manolis; Basilakos, Spyros

    2001-01-01

    Using a sample of 903 APM clusters we investigate whether their dynamical status, as evidenced by the presence of significant substructures, is related to the large-scale structure of the Universe. We find that the cluster dynamical activity is strongly correlated with the tendency of clusters to be aligned with their nearest neighbour and in general with the nearby clusters that belong to the same supercluster. Furthermore, dynamically active clusters are more clustered than the overall cluster population. These are strong indications that clusters develop in a hierarchical fashion by anisotropic merging along the large-scale filaments within which they are embedded.

  2. Strategies for active alignment of lenses

    Science.gov (United States)

    Langehanenberg, Patrik; Heinisch, Josef; Wilde, Chrisitan; Hahne, Felix; Lüerß, Bernd

    2015-10-01

    Today's optical systems require up-to-date assembly and joining technology. The trend of keeping dimensions as small as possible while maintaining or increasing optical imaging performance leaves little to no room for mechanical lens adjustment equipment that may remain in the final product. In this context active alignment of optical elements opens up possibilities for the fast and cost-economic manufacturing of lenses and lens assemblies with highest optical performance. Active alignment for lens manufacturing is the precise alignment of the optical axis of a lens with respect to an optical or mechanical reference axis (e.g. housing) including subsequent fixation by glue. In this contribution we will describe different approaches for active alignment and outline strengths and limitations of the different methods. Using the SmartAlign principle, highest quality cemented lenses can be manufactured without the need for high precision prealignment, while the reduction to a single alignment step greatly reduces the cycle time. The same strategies can also be applied to bonding processes. Lenses and lens groups can be aligned to both mechanical and optical axes to maximize the optical performance of a given assembly. In hybrid assemblies using both mechanical tolerances and active alignment, SmartAlign can be used to align critical lens elements anywhere inside the system for optimized total performance. Since all geometrical parameters are re-measured before each alignment, this process is especially suited for complex and time-consuming production processes where the stability of the reference axis would otherwise be critical. For highest performance, lenses can be actively aligned using up to five degrees of freedom. In this way, SmartAlign enables the production of ultra-precise mounted lenses with an alignment precision below 1 μm.

  3. Swarm Observations of Field Aligned Currents during Geomagnetic Storms

    Science.gov (United States)

    Le, G.; Luhr, H.; Anderson, B. J.; Strangeway, R. J.; Russell, C. T.; Slavin, J. A.; Bromund, K. R.; Plaschke, F.; Magnes, W.; Fischer, D.; Nakamura, R.; Leinweber, H. K.; Torbert, R. B.; Le Contel, O.; Oliveira, D. M.; Raeder, J.; Kepko, L.

    2015-12-01

    Field-aligned currents connect the Earth's magnetosphere to the high latitude ionosphere, and provide a main channel for energy transfer from the magnetosphere to the ionosphere. They are driven by solar wind-magnetosphere interactions and respond dynamically to changes in the solar wind and interplanetary magnetic field. Enhanced interaction during geomagnetic storms significantly intensifies their strength and variability. In this paper, we review our recent observations of field-aligned currents (FACs) during geomagnetic storms using observations from polar orbiting Swarm constellation as well as the Active Magnetosphere and Polar Electrodynamics Response Experiment (AMPERE). Both temporal resolutions and spatial coverage of these observations provide new insights in understanding the FACs and the magnetosphere-ionosphere coupling. We will discuss their spatial and temporal evolutions, ionospheric closure currents, and hemispheric asymmetry during storms.

  4. Improved Ternary Subdivision Interpolation Scheme

    Institute of Scientific and Technical Information of China (English)

    WANG Huawei; QIN Kaihuai

    2005-01-01

    An improved ternary subdivision interpolation scheme was developed for computer graphics applications that can manipulate open control polygons unlike the previous ternary scheme, with the resulting curve proved to be still C2-continuous. Parameterizations of the limit curve near the two endpoints are given with expressions for the boundary derivatives. The split joint problem is handled with the interpolating ternary subdivision scheme. The improved scheme can be used for modeling interpolation curves in computer aided geometric design systems, and provides a method for joining two limit curves of interpolating ternary subdivisions.

  5. Aptaligner: automated software for aligning pseudorandom DNA X-aptamers from next-generation sequencing data.

    Science.gov (United States)

    Lu, Emily; Elizondo-Riojas, Miguel-Angel; Chang, Jeffrey T; Volk, David E

    2014-06-10

    Next-generation sequencing results from bead-based aptamer libraries have demonstrated that traditional DNA/RNA alignment software is insufficient. This is particularly true for X-aptamers containing specialty bases (W, X, Y, Z, ...) that are identified by special encoding. Thus, we sought an automated program that uses the inherent design scheme of bead-based X-aptamers to create a hypothetical reference library and Markov modeling techniques to provide improved alignments. Aptaligner provides this feature as well as length error and noise level cutoff features, is parallelized to run on multiple central processing units (cores), and sorts sequences from a single chip into projects and subprojects.

  6. Galaxy alignment on large and small scales

    Science.gov (United States)

    Kang, X.; Lin, W. P.; Dong, X.; Wang, Y. O.; Dutton, A.; Macciò, A.

    2016-10-01

    Galaxies are not randomly distributed across the universe but showing different kinds of alignment on different scales. On small scales satellite galaxies have a tendency to distribute along the major axis of the central galaxy, with dependence on galaxy properties that both red satellites and centrals have stronger alignment than their blue counterparts. On large scales, it is found that the major axes of Luminous Red Galaxies (LRGs) have correlation up to 30Mpc/h. Using hydro-dynamical simulation with star formation, we investigate the origin of galaxy alignment on different scales. It is found that most red satellite galaxies stay in the inner region of dark matter halo inside which the shape of central galaxy is well aligned with the dark matter distribution. Red centrals have stronger alignment than blue ones as they live in massive haloes and the central galaxy-halo alignment increases with halo mass. On large scales, the alignment of LRGs is also from the galaxy-halo shape correlation, but with some extent of mis-alignment. The massive haloes have stronger alignment than haloes in filament which connect massive haloes. This is contrary to the naive expectation that cosmic filament is the cause of halo alignment.

  7. AUTISTIC CHILDREN PROTECTION SCHEME

    Directory of Open Access Journals (Sweden)

    Dragan LUKIC

    1998-09-01

    Full Text Available The present article sets forth the theoretical grounds which make the basis for the organizational scheme of the autistic persons social protection. This protection consists of the below listed forms of work:· Health service with the role of an early detection and participation in the creation of rehabilitation programs;· Social protection with its programs of work from the diagnostics where the defectologist makes a team together with the physician and the psychologists to the systems of rehabilitation institutions where the defectologist’s is the main responsibility.The present article underlines two facts, namely:· that an autistic person requires to be followed and every spare moment used to promote and advance the activities the doer commenced himself instead of having him carry out the programs which are beyond his internal motivations and which he finds emotionally inaccessible;· that and form of work organization with autistic persons must subordinate its administrative part to the basic professional requirements this kind of disorder (handicap sets in front of each professional.

  8. Indoor localization using unsupervised manifold alignment with geometry perturbation

    KAUST Repository

    Majeed, Khaqan

    2014-04-01

    The main limitation of deploying/updating Received Signal Strength (RSS) based indoor localization is the construction of fingerprinted radio map, which is quite a hectic and time-consuming process especially when the indoor area is enormous and/or dynamic. Different approaches have been undertaken to reduce such deployment/update efforts, but the performance degrades when the fingerprinting load is reduced below a certain level. In this paper, we propose an indoor localization scheme that requires as low as 1% fingerprinting load. This scheme employs unsupervised manifold alignment that takes crowd sourced RSS readings and localization requests as source data set and the environment\\'s plan coordinates as destination data set. The 1% fingerprinting load is only used to perturb the local geometries in the destination data set. Our proposed algorithm was shown to achieve less than 5 m mean localization error with 1% fingerprinting load and a limited number of crowd sourced readings, when other learning based localization schemes pass the 10 m mean error with the same information.

  9. Interference alignment for degrees of freedom improvement in 3-relay half-duplex systems

    KAUST Repository

    Park, Seongho

    2011-12-01

    In a half-duplex relaying, the capacity pre-log factor is a major drawback in spectral efficiency. This paper proposes a linear precoding scheme and an alternate relaying protocol in a dual-hop half-duplex system where three relays help the communication between the source and the destination. In our proposed scheme, we consider a phase incoherent method in relays in which the source alternately transmits message signals to the different relays. In addition, we propose a linear interference alignment scheme which can eliminate the inter-relay interference resulted from the phase incoherence of relaying. Based on our analysis of degrees of freedom and our simulation results, we show that our proposed scheme achieves additional degrees of freedom compared to the conventional half-duplex relaying. © 2011 IEEE.

  10. Alternate transmission relaying based on interference alignment in 3-relay half-duplex MIMO systems

    KAUST Repository

    Park, Seongho

    2012-09-01

    In a half-duplex relaying, the capacity pre-log factor 1/2 is a major drawback in spectral efficiency. This paper proposes a linear precoding/decoding scheme and an alternate relaying protocol in a dual-hop half-duplex system where three relays help the communication between the source and the destination. In our proposed scheme, we consider a phase incoherent method in relays in which the source alternately transmits message signals to the different relays. In addition, we propose a linear interference alignment scheme which can suppress the inter-relay interference resulting from the phase incoherence of relaying. Based on our analysis of degrees of freedom and our simulation results, we show that our proposed scheme achieves additional degrees of freedom compared to the conventional half-duplex relaying. © 2012 IEEE.

  11. Galaxy alignments: Observations and impact on cosmology

    CERN Document Server

    Kirk, Donnacha; Hoekstra, Henk; Joachimi, Benjamin; Kitching, Thomas D; Mandelbaum, Rachel; Sifón, Cristóbal; Cacciato, Marcello; Choi, Ami; Kiessling, Alina; Leonard, Adrienne; Rassat, Anais; Schäfer, Björn Malte

    2015-01-01

    Galaxy shapes are not randomly oriented, rather they are statistically aligned in a way that can depend on formation environment, history and galaxy type. Studying the alignment of galaxies can therefore deliver important information about the astrophysics of galaxy formation and evolution as well as the growth of structure in the Universe. In this review paper we summarise key measurements of intrinsic alignments, divided by galaxy type, scale and environment. We also cover the statistics and formalism necessary to understand the observations in the literature. With the emergence of weak gravitational lensing as a precision probe of cosmology, galaxy alignments took on an added importance because they can mimic cosmic shear, the effect of gravitational lensing by large-scale structure on observed galaxy shapes. This makes intrinsic alignments an important systematic effect in weak lensing studies. We quantify the impact of intrinsic alignments on cosmic shear surveys and finish by reviewing practical mitigat...

  12. Comparative genomics beyond sequence-based alignments

    DEFF Research Database (Denmark)

    Þórarinsson, Elfar; Yao, Zizhen; Wiklund, Eric D.;

    2008-01-01

    Recent computational scans for non-coding RNAs (ncRNAs) in multiple organisms have relied on existing multiple sequence alignments. However, as sequence similarity drops, a key signal of RNA structure--frequent compensating base changes--is increasingly likely to cause sequence-based alignment...... methods to misalign, or even refuse to align, homologous ncRNAs, consequently obscuring that structural signal. We have used CMfinder, a structure-oriented local alignment tool, to search the ENCODE regions of vertebrate multiple alignments. In agreement with other studies, we find a large number...... of potential RNA structures in the ENCODE regions. We report 6587 candidate regions with an estimated false-positive rate of 50%. More intriguingly, many of these candidates may be better represented by alignments taking the RNA secondary structure into account than those based on primary sequence alone, often...

  13. Cost-based droop scheme for DC microgrid

    DEFF Research Database (Denmark)

    Nutkani, Inam Ullah; Wang, Peng; Loh, Poh Chiang;

    2014-01-01

    DC microgrids are gaining interest due to higher efficiencies of DC distribution compared with AC. The benefits of DC systems have been widely researched for data centers, IT facilities and residential applications. The research focus, however, has been more on system architecture and optimal...... voltage level, less on optimized operation and control of generation sources. The latter theme is perused in this paper, where cost-based droop scheme is proposed for distributed generators (DGs) in DC microgrids. Unlike traditional proportional power sharing based droop scheme, the proposed scheme...... considers the generation costs of DGs and dynamically tunes their droop gradients to produce more power from less costly DGs and vice versa. The proposed scheme is fully autonomous, simple to implement in dispatchable and non-dispatchable sources coupled with storage, support islanded and grid...

  14. Scintillation counter: photomultiplier tube alignment

    International Nuclear Information System (INIS)

    A scintillation counter, particularly for counting gamma ray photons, includes a massive lead radiation shield surrounding a sample-receiving zone. The shield is disassembleable into a plurality of segments to allow facile installation and removal of a photomultiplier tube assembly, the segments being so constructed as to prevent straight-line access of external radiation through the shield into the sample receiving zone. Provisions are made for accurately aligning the photomultiplier tube with respect to one or more sample-transmitting bores extending through the shield to the sample receiving zone. A sample elevator, used in transporting samples into the zone, is designed to provide a maximum gamma-receiving aspect to maximize the gamma detecting efficiency. (auth)

  15. Recursions for Statistical Multiple Alignment

    DEFF Research Database (Denmark)

    Hein, Jotun; Pedersen, Christian Nørgaard Storm; Jensen, Jens Ledet

    2002-01-01

    Algorithms are presented that allow the calculation of the probability of a set of sequences related by a binary tree that have evolved according to the Thorne–Kishino–Felsenstein model for a fixed set of parameters. The algorithms are based on a Markov chain generating sequences and their alignm...... but probabilistically different. The running time of the algorithms is , where Li is the length of the ith observed sequences and d is the number of sequences. An alternative recursion is also formulated that uses only a Markov chain involving the inner nodes of a tree....... and their alignment at nodes in a tree. Depending on whether the complete realization of this Markov chain is decomposed into the first transition and the rest of the realization or the last transition and the first part of the realization, two kinds of recursions are obtained that are computationally similar...

  16. Fiscal State-Citizen Alignment

    DEFF Research Database (Denmark)

    Celik, Tim Holst

    2016-01-01

    to the 2008 crisis and the larger post-1970s politico-economic constellation. The crisis can be perceived as a particular articulation of an age-old state-household dynamic—a dialectical alignment of the mode of fiscal state-crafting with the ethos of the state-citizen nexus—characterized by a heightened......The 2008 crisis ended the growth bubble of the 2000s, which Organisation for Economic Co-operation and Development (OECD) governments facilitated through the normative/political-regulatory promotion of household indebtedness. Historically contextualizing this state-citizen relationship......, this article maps out four episodes of sovereign fiscalism, namely, debt-taking in the Italian city-states, the making of the absolutist tax/fiscal state, the eighteenth/nineteenth century elaboration of the economic citizen, and the postwar era of managed capitalism. Finally, it applies this framework...

  17. Using Student Reflections to Explore Curriculum Alignment

    OpenAIRE

    Marina Harvey; Chris Baumann

    2012-01-01

    The concept of curriculum alignment is held as a guiding principle of good curriculum design in higher education. Curriculum alignment can be mapped using a variety of strategies and tools. This paper reports on a project that expands the horizons of curriculum review by applying a novel methodology, word clouds, to investigate the use of student reflections for exploring curriculum alignment.Students, from Australia and Denmark, engaged in written reflections about their learning in a Busine...

  18. Measurement of alignment between standards and assessment

    OpenAIRE

    Näsström, Gunilla

    2008-01-01

    Many educational systems of today are standards-based and aim at for alignment, i.e. consistency, among the components of the educational system: standards, teaching and assessment. To conclude whether the alignment is sufficiently high, analyses with a useful model are needed. This thesis investigates the usefulness of models for analyzing alignment between standards and assessments, with emphasis on one method: Bloom’s revised taxonomy. The thesis comprises an introduction and five articles...

  19. FUSE: Multiple Network Alignment via Data Fusion

    OpenAIRE

    Gligorijević, Vladimir; Malod-Dognin, Noël; Pržulj, Nataša

    2014-01-01

    Discovering patterns in networks of protein-protein interactions (PPIs) is a central problem in systems biology. Alignments between these networks aid functional understanding as they uncover important information, such as evolutionary conserved pathways, protein complexes and functional orthologs. The objective of a multiple network alignment is to create clusters of nodes that are evolutionarily conserved and functionally consistent across all networks. Unfortunately, the alignment methods ...

  20. Alignment performance monitoring for ASML systems

    Science.gov (United States)

    Chung, Woong-Jae; Temchenko, Vlad; Hauck, Tarja; Schmidt, Sebastian

    2006-03-01

    In today's semiconductor industry downscaling of the IC design puts a stringent requirement on pattern overlay control. Tighter overlay requirements lead to exceedingly higher rework rates, meaning additional costs to manufacturing. Better alignment control became a target of engineering efforts to decrease rework rate for high-end technologies. Overlay performance is influenced by known parameters such as "Shift, Scaling, Rotation, etc", and unknown parameters defined as "Process Induced Variation", which are difficult to control by means of a process automation system. In reality, this process-induced variation leads to a strong wafer to wafer, or lot to lot variation, which are not easy to detect in the mass-production environment which uses sampling overlay measurements for only several wafers in a lot. An engineering task of finding and correcting a root cause for Process Induced Variations of overlay performance will be greatly simplified if the unknown parameters could be tracked for each wafer. This paper introduces an alignment performance monitoring method based on analysis of automatically generated "AWE" files for ASML scanner systems. Because "AWE" files include alignment results for each aligned wafer, it is possible to use them for monitoring, controlling and correcting the causes of "process induced" overlay performance without requiring extra measurement time. Since "AWE" files include alignment information for different alignment marks, it is also possible to select and optimize the best alignment recipe for each alignment strategy. Several case studies provided in our paper will demonstrate how AWE file analysis can be used to assist engineer in interpreting pattern alignment data. Since implementing our alignment data monitoring method, we were able to achieve significant improvement of alignment and overlay performance without additional overlay measurement time. We also noticed that the rework rate coming from alignment went down and

  1. Hermite-interpolatory subdivision schemes

    NARCIS (Netherlands)

    Kuijt, Frans; Damme, van Ruud

    1998-01-01

    Stationary interpolatory subdivision schemes for Hermite data that consist of function values and first derivatives are examined. A general class of Hermite-interpolatory subdivision schemes is proposed, and some of its basic properties are stated. The goal is to characterise and construct certain c

  2. Homographic scheme for Riccati equation

    CERN Document Server

    Dubois, François

    2011-01-01

    In this paper we present a numerical scheme for the resolution of matrix Riccati equation, usualy used in control problems. The scheme is unconditionnaly stable and the solution is definite positive at each time step of the resolution. We prove the convergence in the scalar case and present several numerical experiments for classical test cases.

  3. On stochastic finite difference schemes

    OpenAIRE

    Gyongy, Istvan

    2013-01-01

    Finite difference schemes in the spatial variable for degenerate stochastic parabolic PDEs are investigated. Sharp results on the rate of $L_p$ and almost sure convergence of the finite difference approximations are presented and results on Richardson extrapolation are established for stochastic parabolic schemes under smoothness assumptions.

  4. COS to FGS Alignment {NUV}

    Science.gov (United States)

    Hartig, George

    2009-07-01

    DESCRIPTION: In order to determine the location of the COS reference frame with respect to the FGS reference frames, NUV MIRRORA images will be obtained of an astrometric target and field. Astrometric guide stars and targets must be employed for this activity in order to facilitate the alignment wth the FGS. Images will be obtained at the initial pointing and at positions offset in V2 and in V3. Starting with the original blind pointing, obtain MIRRORA image exposures in a 5x5 POS-TARG grid centered on initial pointing; repeat the image sequence at two bracketing focus positions in same visit. Following completion of third pattern, return to nominal focus and perform 5x5 ACQ/SEARCH target acquisition and obtain one TIME-TAG MIRRORA image and one ACCUM verification exposure. Next perform an ACQ/IMAGE target acquisition followed by an ACCUM verification exposure. Also obtain ACCUM verification exposure for each of the two alternate focus positions used previously. Using MIRRORB obtain ACCUM confirmation image at nominal focus and ACCUM images at alternate focus positions and then perform an ACQ/IMAGE and confirming image at nominal focus. Analyze imagery, uplink pointing offset as offset 11469A and adjust nominal focus via patchable constant uplinked with subsequent visit of this program; update aperture locations via modified SIAF file uplinked with subsequent SMS. Use updated focus and offset pointing as input for COS 09 {program 11469 - NUV Optics Alignment and Focus} {note the SIAF update is not a prerequisite for COS 09 to proceed, but the pointing offset and focus update are}.

  5. Projective synchronization of chaotic systems with bidirectional nonlinear coupling

    Indian Academy of Sciences (India)

    Mohammada Ali Khan; Swarup Poria

    2013-09-01

    This paper presents a new scheme for constructing bidirectional nonlinear coupled chaotic systems which synchronize projectively. Conditions necessary for projective synchronization (PS) of two bidirectionally coupled chaotic systems are derived using Lyapunov stability theory. The proposed PS scheme is discussed by taking as examples the so-called unified chaotic model, the Lorenz–Stenflo system and the nonautonomous chaotic Van der Pol oscillator. Numerical simulation results are presented to show the efficiency of the proposed synchronization scheme.

  6. Track Based Alignment of Composite Detector Structures

    CERN Document Server

    Karimäki, V; Schilling, F P

    2006-01-01

    An iterative algorithm for track based alignment is presented. The algorithm can be applied to rigid composite detector structures or to individual modules. The iterative process involves track reconstruction and alignment, in which the chi-2 function of the hit residuals of each alignable object is minimized. Six alignment parameters per structure or per module, three for location and three for orientation, can be computed. The method is computationally light and easily parallelizable. The performance of the method is demonstrated with simulated tracks in the CMS pixel detector and tracks reconstructed from experimental data recorded with a test beam setup.

  7. Molecular alignment using circularly polarized laser pulses

    CERN Document Server

    Smeenk, C T L

    2013-01-01

    We show that circularly polarized femtosecond laser pulses produce field-free alignment in linear and planar molecules. We study the rotational wavepacket evolution of O$_2$ and benzene created by circularly polarized light. For benzene, we align the molecular plane to the plane of polarization. For O$_2$, we demonstrate that circular polarization yields a net alignment along the laser propagation axis at certain phases of the evolution. Circular polarization gives us the ability to control alignment of linear molecules outside the plane of polarization, providing new capabilities for molecular imaging.

  8. The twilight zone of cis element alignments.

    Science.gov (United States)

    Sebastian, Alvaro; Contreras-Moreira, Bruno

    2013-02-01

    Sequence alignment of proteins and nucleic acids is a routine task in bioinformatics. Although the comparison of complete peptides, genes or genomes can be undertaken with a great variety of tools, the alignment of short DNA sequences and motifs entails pitfalls that have not been fully addressed yet. Here we confront the structural superposition of transcription factors with the sequence alignment of their recognized cis elements. Our goals are (i) to test TFcompare (http://floresta.eead.csic.es/tfcompare), a structural alignment method for protein-DNA complexes; (ii) to benchmark the pairwise alignment of regulatory elements; (iii) to define the confidence limits and the twilight zone of such alignments and (iv) to evaluate the relevance of these thresholds with elements obtained experimentally. We find that the structure of cis elements and protein-DNA interfaces is significantly more conserved than their sequence and measures how this correlates with alignment errors when only sequence information is considered. Our results confirm that DNA motifs in the form of matrices produce better alignments than individual sequences. Finally, we report that empirical and theoretically derived twilight thresholds are useful for estimating the natural plasticity of regulatory sequences, and hence for filtering out unreliable alignments.

  9. IMAGA: INTRON MULTIPLE ALIGNMENT USING GENETIC ALGORITHM

    Directory of Open Access Journals (Sweden)

    V. AMOUDA,

    2010-11-01

    Full Text Available Multiple sequence alignment (MSA is one of the multi-dimensional problems in biology. This paper describes a new approach to solve MSA, a NP-hard problem using modified Genetic Algorithm with new mutation operator. A web based tool iMAGA (Intron Multiple Alignment using Genetic Algorithm is developed for aligning the intron sequences in order to find the pattern. It has two modules (i iExtractor/ iClassifier which extracts and classifies introns (ii iAligner/ Pattern Finder which aligns the intron sequences and finds the patterns. iAligner, the core module of the tool aligns any type of sequences (DNA, RNA, Protein & Intron. In this module GA is applied in which the chromosome consists of gap positions. On applying conventional mutation operator leads to problems like repetition and increase in number of gap positions. To overcome theseproblems, a newly designed mutation operator X-Shuffler is proposed.To validate the alignment, the sum-of-pairs score is used to compare iMAGA with widely used tools. The data sets chosen from the standard BaliBASE, SMART and OXBENCH benchmark alignment suite. To validate the pattern obtained using iMAGA tool, the similarity percentage of the pattern is compared with MEME, a widely used motif finder. Dataset of Saccharomyces Cerviceae with 254 intron sequences are used to prove this work. The tool is available at www.imaga.bicpu.edu.in.

  10. Multiuser Switched Diversity Scheduling Schemes

    CERN Document Server

    Shaqfeh, Mohammad; Alouini, Mohamed-Slim

    2012-01-01

    Multiuser switched-diversity scheduling schemes were recently proposed in order to overcome the heavy feedback requirements of conventional opportunistic scheduling schemes by applying a threshold-based, distributed, and ordered scheduling mechanism. The main idea behind these schemes is that slight reduction in the prospected multiuser diversity gains is an acceptable trade-off for great savings in terms of required channel-state-information feedback messages. In this work, we characterize the achievable rate region of multiuser switched diversity systems and compare it with the rate region of full feedback multiuser diversity systems. We propose also a novel proportional fair multiuser switched-based scheduling scheme and we demonstrate that it can be optimized using a practical and distributed method to obtain the feedback thresholds. We finally demonstrate by numerical examples that switched-diversity scheduling schemes operate within 0.3 bits/sec/Hz from the ultimate network capacity of full feedback sys...

  11. Flavour alignment in physics beyond the standard model

    Energy Technology Data Exchange (ETDEWEB)

    Braeuninger, Carolin Barbara

    2012-11-21

    There are numerous reasons to think that the Standard Model of physics is not the ultimate theory of nature on very small scales. However, attempts to construct theories that go beyond the Standard Model generically lead to high rates of flavour changing neutral processes that are in conflict with experiment: Quarks are the fundamental constituents of protons and neutrons. Together with electrons they form the visible matter of the universe1. They come in three generations or ''flavours''. In interactions, quarks of different generations can mix, i.e. a quark of one flavour can transform into a quark of another flavour. In the Standard Model, at first order in perturbation theory, such processes occur only via the exchange of a charged particle. Flavour changing neutral processes can only arise in processes involving loops of charged particles. This is due to the fact that all couplings of two quarks to a neutral particle are diagonal in the basis of the mass eigenstates of the quarks. There is thus no mixing of quarks of different flavour at first order. Since the loop processes are suppressed by a loop factor, the Standard Model predicts very low rates for neutral processes that change the flavour of quarks. So far, this is in agreement with experiment. In extensions of the Standard Model, new couplings to the quarks are usually introduced. In general there is no reason why the new coupling matrices should be diagonal in the mass basis of the quarks. These models therefore predict high rates for processes that mix quarks of different flavour. Extensions of the Standard Model must therefore have a non-trivial flavour structure. A possibility to avoid flavour violation is to assume that the new couplings are aligned with the mass matrices of the quarks, i.e. diagonal in the same basis. This alignment could be due to a flavour symmetry. In this thesis, two extensions of the Standard Model with alignment are studied. The first is a simple

  12. Triangular Alignment (TAME). A Tensor-based Approach for Higher-order Network Alignment

    Energy Technology Data Exchange (ETDEWEB)

    Mohammadi, Shahin [Purdue Univ., West Lafayette, IN (United States); Gleich, David F. [Purdue Univ., West Lafayette, IN (United States); Kolda, Tamara G. [Sandia National Laboratories (SNL-CA), Livermore, CA (United States); Grama, Ananth [Purdue Univ., West Lafayette, IN (United States)

    2015-11-01

    Network alignment is an important tool with extensive applications in comparative interactomics. Traditional approaches aim to simultaneously maximize the number of conserved edges and the underlying similarity of aligned entities. We propose a novel formulation of the network alignment problem that extends topological similarity to higher-order structures and provide a new objective function that maximizes the number of aligned substructures. This objective function corresponds to an integer programming problem, which is NP-hard. Consequently, we approximate this objective function as a surrogate function whose maximization results in a tensor eigenvalue problem. Based on this formulation, we present an algorithm called Triangular AlignMEnt (TAME), which attempts to maximize the number of aligned triangles across networks. We focus on alignment of triangles because of their enrichment in complex networks; however, our formulation and resulting algorithms can be applied to general motifs. Using a case study on the NAPABench dataset, we show that TAME is capable of producing alignments with up to 99% accuracy in terms of aligned nodes. We further evaluate our method by aligning yeast and human interactomes. Our results indicate that TAME outperforms the state-of-art alignment methods both in terms of biological and topological quality of the alignments.

  13. Scheme for Quantum Computing Immune to Decoherence

    Science.gov (United States)

    Williams, Colin; Vatan, Farrokh

    2008-01-01

    that the derivation provides explicit constructions for finding the exchange couplings in the physical basis needed to implement any arbitrary 1-qubit gate. These constructions lead to spintronic encodings of quantum logic that are more efficient than those of a previously published scheme that utilizes a universal but fixed set of gates.

  14. Impact polarization and alignment creation parameters via stepwise excitation processes

    International Nuclear Information System (INIS)

    W report here results from first order many body theory, distorted wave approximation, and converged close coupling calculations for polarization fractions and alignment creation parameters in the case of 21S → n1P(n 3 - 5), 23S → n1P(n = 2 - 5), 21S → n1D(n = 3 - 5), 23S → n1D(n = 3 - 5), 23S → n3D(n = 3 - 5), and 21S → n3D(n = 3 - 5) excitations in helium for electron impact energies from threshold to several hundred eV. (author)

  15. Automatic Resonance Alignment of High-Order Microring Filters

    CERN Document Server

    Mak, Jason C C; Xue, Tianyuan; Mikkelsen, Jared C; Yong, Zheng; Poon, Joyce K S

    2015-01-01

    Automatic resonance alignment tuning is performed in high-order series coupled microring filters using a feedback system. By inputting only a reference wavelength, a filter is tuned such that passband ripples are dramatically reduced compared to the initial detuned state and the passband becomes centered at the reference. The method is tested on 5th order microring filters fabricated in a standard silicon photonics foundry process. Repeatable tuning is demonstrated for filters on multiple dies from the wafer and for arbitrary reference wavelengths within the free spectral range of the microrings.

  16. Design and Test of Object Aligning Grippers for Industrial Applications

    DEFF Research Database (Denmark)

    Ellekilde, Lars-Peter; Petersen, Henrik Gordon

    2006-01-01

    In this paper we will present a new concept for gripping objects in industrial applications. We assume that a priori, the object pose is only known with a relative low accuracy. Despite this, our method can lead to high accuracy gripping suitable for e.g. industrial assembly. Our concept...... is to augment a simple parallel gripper by mounting a set of object speci?c jaws. Given the right shapes these jaws enable the gripper to automatically align the object, and thereby compensate for errors in the original object pose estimation. We will introduce a couple of automatic and semi-automatic design...

  17. A phase-image watermarking scheme in gyrator domain using devil's vortex Fresnel lens as a phase mask

    Science.gov (United States)

    Yadav, A. K.; Vashisth, Sunanda; Singh, Hukum; Singh, Kehar

    2015-06-01

    We propose a watermarking scheme for phase images, based on the use of devil's vortex Fresnel lens (DVFL) as a phase mask. The DVFL provides much-desired parameter-rich phase masks which contribute to the enhanced security of the scheme in addition to overcoming the problem of axis alignment in the optical setup. The scheme uses gyrator transform (GT) in the input and the frequency domains to encrypt the input phase image before combining it with a host image. The scheme is validated for its efficacy, and analyzed for its sensitivity to various encryption parameters. Finally, it is examined for its robustness against occlusion and noise attacks.

  18. A Data Gathering Scheme in Wireless Sensor Networks Based on Synchronization of Chaotic Spiking Oscillator Networks

    International Nuclear Information System (INIS)

    This paper studies chaos-based data gathering scheme in multiple sink wireless sensor networks. In the proposed scheme, each wireless sensor node has a simple chaotic oscillator. The oscillators generate spike signals with chaotic interspike intervals, and are impulsively coupled by the signals via wireless communication. Each wireless sensor node transmits and receives sensor information only in the timing of the couplings. The proposed scheme can exhibit various chaos synchronous phenomena and their breakdown phenomena, and can effectively gather sensor information with the significantly small number of transmissions and receptions compared with the conventional scheme. Also, the proposed scheme can flexibly adapt various wireless sensor networks not only with a single sink node but also with multiple sink nodes. This paper introduces our previous works. Through simulation experiments, we show effectiveness of the proposed scheme and discuss its development potential.

  19. On the ionospheric coupling of auroral electric fields

    OpenAIRE

    G. T. Marklund

    2009-01-01

    The quasi-static coupling of high-altitude potential structures and electric fields to the ionosphere is discussed with particular focus on the downward field-aligned current (FAC) region. Results are presented from a preliminary analysis of a selection of electric field events observed by Cluster above the acceleration region. The degree of coupling is here estimated as the ratio between the magnetic field-aligned potential drop, ΔΦII, as inferred fro...

  20. Bayesian coestimation of phylogeny and sequence alignment

    Directory of Open Access Journals (Sweden)

    Jensen Jens

    2005-04-01

    Full Text Available Abstract Background Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this problem is to first build a multiple alignment of these sequences, followed by a phylogenetic reconstruction step based on this multiple alignment. However, alignment and phylogenetic inference are fundamentally interdependent, and ignoring this fact leads to biased and overconfident estimations. Whether the main interest be in sequence alignment or phylogeny, a major goal of computational biology is the co-estimation of both. Results We developed a fully Bayesian Markov chain Monte Carlo method for coestimating phylogeny and sequence alignment, under the Thorne-Kishino-Felsenstein model of substitution and single nucleotide insertion-deletion (indel events. In our earlier work, we introduced a novel and efficient algorithm, termed the "indel peeling algorithm", which includes indels as phylogenetically informative evolutionary events, and resembles Felsenstein's peeling algorithm for substitutions on a phylogenetic tree. For a fixed alignment, our extension analytically integrates out both substitution and indel events within a proper statistical model, without the need for data augmentation at internal tree nodes, allowing for efficient sampling of tree topologies and edge lengths. To additionally sample multiple alignments, we here introduce an efficient partial Metropolized independence sampler for alignments, and combine these two algorithms into a fully Bayesian co-estimation procedure for the alignment and phylogeny problem. Our approach results in estimates for the posterior distribution of evolutionary rate parameters, for the maximum a-posteriori (MAP phylogenetic tree, and for the posterior decoding alignment. Estimates for the evolutionary tree and multiple alignment are augmented with confidence estimates for each node height and alignment column

  1. Alignments between galaxies, satellite systems and haloes

    Science.gov (United States)

    Shao, Shi; Cautun, Marius; Frenk, Carlos S.; Gao, Liang; Crain, Robert A.; Schaller, Matthieu; Schaye, Joop; Theuns, Tom

    2016-08-01

    The spatial distribution of the satellite populations of the Milky Way and Andromeda are puzzling in that they are nearly perpendicular to the discs of their central galaxies. To understand the origin of such configurations we study the alignment of the central galaxy, satellite system and dark matter halo in the largest of the `Evolution and Assembly of GaLaxies and their Environments' (EAGLE) simulation. We find that centrals and their satellite systems tend to be well aligned with their haloes, with a median misalignment angle of 33° in both cases. While the centrals are better aligned with the inner 10 kpc halo, the satellite systems are better aligned with the entire halo indicating that satellites preferentially trace the outer halo. The central-satellite alignment is weak (median misalignment angle of 52°) and we find that around 20 per cent of systems have a misalignment angle larger than 78°, which is the value for the Milky Way. The central-satellite alignment is a consequence of the tendency of both components to align with the dark matter halo. As a consequence, when the central is parallel to the satellite system, it also tends to be parallel to the halo. In contrast, if the central is perpendicular to the satellite system, as in the case of the Milky Way and Andromeda, then the central-halo alignment is much weaker. Dispersion-dominated (spheroidal) centrals have a stronger alignment with both their halo and their satellites than rotation-dominated (disc) centrals. We also found that the halo, the central galaxy and the satellite system tend to be aligned with the surrounding large-scale distribution of matter, with the halo being the better aligned of the three.

  2. A NON-OSCILLATORY SCHEME FOR OPEN CHANNEL FLOWS. (R825200)

    Science.gov (United States)

    In modeling shocks in open channel flows, the traditional finite difference schemes become inefficient and warrant special numerical treatment for smooth computations. This paper provides a general introduction to the non-oscillatory high-resolution methodology, coupled with the ...

  3. Paraxial theory of sum-frequency generation by side-walk alignment and phase-matching in uniaxial crystals

    OpenAIRE

    Hacyan, Shahen

    2011-01-01

    A formalism in terms of Hertz potentials is presented describing sum-frequency generation in a uniaxial non-linear crystal. A scheme is proposed consisting in aligning the side-walk propagation of extraordinary waves in combination with phase-matching. Simplified paraxial equations describing this situation are obtained. Particular attention is paid to the generation of second harmonics.

  4. Volume visualization of multiple alignment of large genomicDNA

    Energy Technology Data Exchange (ETDEWEB)

    Shah, Nameeta; Dillard, Scott E.; Weber, Gunther H.; Hamann, Bernd

    2005-07-25

    Genomes of hundreds of species have been sequenced to date, and many more are being sequenced. As more and more sequence data sets become available, and as the challenge of comparing these massive ''billion basepair DNA sequences'' becomes substantial, so does the need for more powerful tools supporting the exploration of these data sets. Similarity score data used to compare aligned DNA sequences is inherently one-dimensional. One-dimensional (1D) representations of these data sets do not effectively utilize screen real estate. As a result, tools using 1D representations are incapable of providing informatory overview for extremely large data sets. We present a technique to arrange 1D data in 3D space to allow us to apply state-of-the-art interactive volume visualization techniques for data exploration. We demonstrate our technique using multi-millions-basepair-long aligned DNA sequence data and compare it with traditional 1D line plots. The results show that our technique is superior in providing an overview of entire data sets. Our technique, coupled with 1D line plots, results in effective multi-resolution visualization of very large aligned sequence data sets.

  5. Spinning particles coupled to gravity

    CERN Document Server

    Hojman, Sergio A

    2016-01-01

    Recent experimental work has determined that free falling $^{87}$Rb atoms on Earth, with vertically aligned spins, follow geodesics, thus apparently ruling out spin--gravitation interactions. It is showed that while some spinning matter models coupled to gravitation referenced to in that work seem to be ruled out by the experiment, those same experimental results confirm theoretical results derived from a Lagrangian description of spinning particles coupled to gravity constructed over forty years ago. A proposal to carry out (similar but) different experiments which will help to test the validity of the Universality of Free Fall as opposed to the correctness of the aforementioned Lagrangian theory, is presented.

  6. The impact of intrinsic alignment on current and future cosmic shear surveys

    OpenAIRE

    Krause, Elisabeth; Eifler, Tim; Blazek, Jonathan

    2015-01-01

    Intrinsic alignment (IA) of source galaxies is one of the major astrophysical systematics for ongoing and future weak lensing surveys. This paper presents the first forecasts of the impact of IA on cosmic shear measurements for current and future surveys (DES, Euclid, LSST, WFIRST) using simulated likelihood analyses and realistic covariances that include higher-order moments of the density field in the computation. We consider a range of possible IA scenarios and test mitigation schemes, whi...

  7. Molecular Alignment and Orientation From Laser-Induced Mechanisms to Optimal Control

    CERN Document Server

    Atabek, O

    2002-01-01

    Genetic algorithms, as implemented in optimal control strategies, are currently successfully exploited in a wide range of problems in molecular physics. In this context, laser control of molecular alignment and orientation remains a very promising issue with challenging applications extending from chemical reactivity to nanoscale design. We emphasize the complementarity between basic quantum mechanisms monitoring alignment/orientation processes and optimal control scenarios. More explicitly, if on one hand we can help the optimal control scheme to take advantage of such mechanisms by appropriately building the targets and delineating the parameter sampling space, on the other hand we expect to learn, from optimal control results, some robust and physically sound dynamical mechanisms. We present basic mechanisms for alignment and orientation, such as pendular states accommodated by the molecule-plus-field effective potential and the "kick" mechanism obtained by a sudden excitation. Very interestingly, an optim...

  8. Spin-aligned RI beams via two-step fragmentation reactions

    Energy Technology Data Exchange (ETDEWEB)

    Ichikawa, Y., E-mail: yuichikawa@phys.titech.ac.jp [RIKEN Nishina Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198 (Japan); Ueno, H. [RIKEN Nishina Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198 (Japan); Ishii, Y. [Department of Physics, Tokyo Institute of Technology, 2-12-1 Oh-okayama, Meguro, Tokyo 152-8551 (Japan); Furukawa, T. [Department of Physics, Tokyo Metropolitan University, 1-1 Minami-Osawa, Hachioji, Tokyo 192-0397 (Japan); Yoshimi, A. [Research Core for Extreme Quantum World, Okayama University, 3-1-1 Tsushimanaka, Kita, Okayama 700-8530 (Japan); Kameda, D.; Watanabe, H.; Aoi, N. [RIKEN Nishina Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198 (Japan); Asahi, K. [Department of Physics, Tokyo Institute of Technology, 2-12-1 Oh-okayama, Meguro, Tokyo 152-8551 (Japan); Balabanski, D.L. [Institute for Nuclear Research and Nuclear Energy, Bulgarian Academy of Sciences, BG-1784 Sofia (Bulgaria); Chevrier, R.; Daugas, J.M. [CEA, DAM, DIF, F-91297 Arpajon (France); Fukuda, N. [RIKEN Nishina Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198 (Japan); Georgiev, G. [CSNSM, IN2P3-CNRS, Université Paris-sud, F-91404 Orsay (France); Hayashi, H.; Iijima, H. [Department of Physics, Tokyo Institute of Technology, 2-12-1 Oh-okayama, Meguro, Tokyo 152-8551 (Japan); Inabe, N. [RIKEN Nishina Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198 (Japan); Inoue, T. [Department of Physics, Tokyo Institute of Technology, 2-12-1 Oh-okayama, Meguro, Tokyo 152-8551 (Japan); Ishihara, M.; Kubo, T. [RIKEN Nishina Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198 (Japan); and others

    2013-12-15

    A method to produce spin-aligned rare isotope (RI) beams has been developed, where a scheme of two-step projectile fragmentation to produce the RI of interest with high spin alignment and a technique of momentum-dispersion matching are combined. Effectiveness of the present method was demonstrated in an experiment at the RIKEN RIBF, where an RI beam of {sup 32}Al with spin alignment of 8(1)% was successfully produced from a primary beam of {sup 48}Ca, via an intermediate RI of {sup 33}Al. Figure of merit of the present method was found to be more than 50 times greater than that of the conventional method employing single-step projectile fragmentation.

  9. Survey and Alignment of the 100MeV Linear Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Park, Bumsik; Kwon, Hyeokjung; Jang, Jiho; Kim, Hansung; Kim, Daeil; Cho, Yongsub [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2013-05-15

    The 100MeV linear accelerator was installed and under commissioning at the Gyeongju site. The 100MeV proton linac was developed by the KOMAC according to the survey work and the alignment process. 100MeV proton beam will be supplied to the users after the beam commissioning. KOMAC is developing a 100MeV high-duty-factor proton linac. Linac is composed with a 50keV proton injector, a 3MeV RFQ, DTL tanks and a beam dump. In this paper, the survey and alignment scheme are described. To install the accelerator, the align network was built and the survey work was accomplished. On the basis of the survey result, all of the accelerator components were installed in the tunnel with two laser trackers.

  10. Theoretical analysis of nanoparticle-induced homeotropic alignment in nematic liquid crystals

    CERN Document Server

    Choudhary, Amit; Li, Guoqiang

    2015-01-01

    A theoretical analysis of homeotropic alignment induced by nanoparticles (NPs) in a nematic liquid crystal (NLC) sample cell is presented. It is found that such alignment on the surface of a NP causes a change in the orientation of the molecular director near the surface, which in turn induces variations in the elastic constants and free energy. The induced NLC properties allow coupling between nearby NPs, mediated by the NLC molecules. The rotation of the coupled NPs close to the substrate tends to induce a long-range orientation of the NLC molecular director, leading to modification in the alignment at the interface of NLC and substrate which induces the orientation from homogeneous (planar) to homeotropic (vertical) in the bulk material.

  11. Coordinated renewable energy support schemes

    DEFF Research Database (Denmark)

    Morthorst, P.E.; Jensen, S.G.

    2006-01-01

    This paper illustrates the effect that can be observed when support schemes for renewable energy are regionalised. Two theoretical examples are used to explain interactive effects on, e.g., the price of power, conditions for conventional power producers, and changes in import and export of power...... RES-E support schemes already has a common liberalised power market. In this case the introduction of a common support scheme for renewable technologies will lead to more efficient sitings of renewable plants, improving economic and environmental performance of the total power system...

  12. Business and IT alignment in context

    NARCIS (Netherlands)

    Silvius, A.J.G.

    2013-01-01

    Already for more than two decades, the necessity and desirability of aligning business needs and information technology (IT) capabilities is considered to be one of the key issues in IT management. However, several studies report quite low scores on business and IT alignment (BIA). The question “Why

  13. Sambamba: fast processing of NGS alignment formats

    NARCIS (Netherlands)

    Tarasov, A.; Vilella, A.J.; Cuppen, E.; Nijman, I.J.; Prins, J.C.P.

    2015-01-01

    Sambamba is a high-performance robust tool and library for working with SAM, BAM and CRAM sequence alignment files; the most common file formats for aligned next generation sequencing data. Sambamba is a faster alternative to samtools that exploits multi-core processing and dramatically reduces proc

  14. Automatic alignment of hieroglyphs and transliteration

    OpenAIRE

    Nederhof, Mark Jan

    2009-01-01

    Automatic alignment has important applications in philology, facilitating study of texts on the basis of electronic resources produced by different scholars. A simple technique is presented to realise such alignment for Ancient Egyptian hieroglyphic texts and transliteration. Preliminary experiments with the technique are reported, and plans for future work are discussed. Postprint

  15. A cross-species alignment tool (CAT)

    DEFF Research Database (Denmark)

    Li, Heng; Guan, Liang; Liu, Tao;

    2007-01-01

    BACKGROUND: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for intra-species alignments, among which are successful ones with high specificity and speed. The other group contains more...

  16. Aligning the μs-ALEX Setup.

    Science.gov (United States)

    Kapanidis, Achillefs; Majumdar, Devdoot; Heilemann, Mike; Nir, Eyal; Weiss, Shimon

    2015-11-01

    To achieve single-molecule sensitivity and thus have the ability to detect single diffusing fluorophores, careful alignment of the microsecond-alternating laser excitation (μs-Alex) setup is crucial. The following protocol describes routine alignment for 2c-ALEX (532 nm/635 nm) with spectral windows G(550-620)R(650-750). PMID:26527766

  17. Compositions for directed alignment of conjugated polymers

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jinsang; Kim, Bong-Gi; Jeong, Eun Jeong

    2016-04-19

    Conjugated polymers (CPs) achieve directed alignment along an applied flow field and a dichroic ratio of as high as 16.67 in emission from well-aligned thin films and fully realized anisotropic optoelectronic properties of CPs in field-effect transistor (FET).

  18. Evaluating Alignment between Curriculum, Assessment, and Instruction

    Science.gov (United States)

    Martone, Andrea; Sireci, Stephen G.

    2009-01-01

    The authors (a) discuss the importance of alignment for facilitating proper assessment and instruction, (b) describe the three most common methods for evaluating the alignment between state content standards and assessments, (c) discuss the relative strengths and limitations of these methods, and (d) discuss examples of applications of each…

  19. Instructional Alignment under No Child Left Behind

    Science.gov (United States)

    Polikoff, Morgan S.

    2012-01-01

    The alignment of instruction with the content of standards and assessments is the key mediating variable separating the policy of standards-based reform (SBR) from the outcome of improved student achievement. Few studies have investigated SBR's effects on instructional alignment, and most have serious methodological limitations. This research uses…

  20. Optical packet switching without packet alignment

    DEFF Research Database (Denmark)

    Hansen, Peter Bukhave; Danielsen, Søren Lykke; Stubkjær, Kristian

    1998-01-01

    Operation without packet alignment of an all-optical packet switch is proposed and predicted feasible through a detailed traffic analysis. Packet alignment units are eliminated resulting in a simple switch architecture while optimal traffic performance is maintained through the flexibility provided...

  1. Alignment Nashville. Complementary Learning in Action

    Science.gov (United States)

    Bouffard, Suzanne; Malone, Helen

    2007-01-01

    This profile illustrates how Alignment Nashville brings together diverse community members and organizations to leverage existing resources in support of Nashville's youth and the Metro Nashville Public Schools. In addition to a diversified funding structure, Alignment leaders point to three factors that have helped them get the effort off the…

  2. Sambamba : Fast processing of NGS alignment formats

    NARCIS (Netherlands)

    Tarasov, Artem; Vilella, Albert J.; Cuppen, Edwin; Nijman, Isaac J.; Prins, Pjotr

    2015-01-01

    Summary: Sambamba is a high-performance robust tool and library for working with SAM, BAM and CRAM sequence alignment files; the most common file formats for aligned next generation sequencing data. Sambamba is a faster alternative to samtools that exploits multi-core processing and dramatically red

  3. On comparing two structured RNA multiple alignments.

    Science.gov (United States)

    Patel, Vandanaben; Wang, Jason T L; Setia, Shefali; Verma, Anurag; Warden, Charles D; Zhang, Kaizhong

    2010-12-01

    We present a method, called BlockMatch, for aligning two blocks, where a block is an RNA multiple sequence alignment with the consensus secondary structure of the alignment in Stockholm format. The method employs a quadratic-time dynamic programming algorithm for aligning columns and column pairs of the multiple alignments in the blocks. Unlike many other tools that can perform pairwise alignment of either single sequences or structures only, BlockMatch takes into account the characteristics of all the sequences in the blocks along with their consensus structures during the alignment process, thus being able to achieve a high-quality alignment result. We apply BlockMatch to phylogeny reconstruction on a set of 5S rRNA sequences taken from fifteen bacteria species. Experimental results showed that the phylogenetic tree generated by our method is more accurate than the tree constructed based on the widely used ClustalW tool. The BlockMatch algorithm is implemented into a web server, accessible at http://bioinformatics.njit.edu/blockmatch. A jar file of the program is also available for download from the web server. PMID:21121021

  4. Achieving Organisational Change through Values Alignment

    Science.gov (United States)

    Branson, Christopher M.

    2008-01-01

    Purpose: The purpose of this paper is to, first, establish the interdependency between the successful achievement of organisational change and the attainment of values alignment within an organisation's culture and then, second, to describe an effective means for attaining such values alignment. Design/methodology/approach: Literature from the…

  5. SOA-Driven Business-Software Alignment

    NARCIS (Netherlands)

    Shishkov, Boris; Sinderen, van Marten; Quartel, Dick

    2006-01-01

    The alignment of business processes and their supporting application software is a major concern during the initial software design phases. This paper proposes a design approach addressing this problem of business-software alignment. The approach takes an initial business model as a basis in derivin

  6. Vacuum alignment with(out) elementary scalars

    CERN Document Server

    Alanne, Tommi; Meroni, Aurora; Sannino, Francesco

    2016-01-01

    We systematically elucidate differences and similarities of the vacuum alignment issue in composite and renormalizable elementary extensions of the Standard Model featuring a pseudo-Goldstone Higgs. We also provide general conditions for the stability of the vacuum in the elementary framework, thereby extending previous studies of the vacuum alignment.

  7. STELLAR: fast and exact local alignments

    Directory of Open Access Journals (Sweden)

    Weese David

    2011-10-01

    Full Text Available Abstract Background Large-scale comparison of genomic sequences requires reliable tools for the search of local alignments. Practical local aligners are in general fast, but heuristic, and hence sometimes miss significant matches. Results We present here the local pairwise aligner STELLAR that has full sensitivity for ε-alignments, i.e. guarantees to report all local alignments of a given minimal length and maximal error rate. The aligner is composed of two steps, filtering and verification. We apply the SWIFT algorithm for lossless filtering, and have developed a new verification strategy that we prove to be exact. Our results on simulated and real genomic data confirm and quantify the conjecture that heuristic tools like BLAST or BLAT miss a large percentage of significant local alignments. Conclusions STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar. The source code is freely distributed with the SeqAn C++ library version 1.3 and later at http://www.seqan.de.

  8. A simple lattice Boltzmann scheme for low Mach number reactive flows

    Institute of Scientific and Technical Information of China (English)

    CHEN; Sheng; LIU; Zhaohui; ZHANG; Chao; HE; Zhu; TIAN; Zhiwei; SHI; Baochang

    2006-01-01

    For simulating low Mach number reactive flows, a simple and coupled lattice Boltzmann (CLB) scheme is proposed, by which the fluid density can bear significant changes. Different from the existing hybrid lattice Boltzmann (HLB) scheme and non-coupled lattice Boltzmann (NCLB) scheme, this scheme is strictly lattice Boltzmann style and the fluid density couples directly with the temperature. Because it has got rid of the constraint of traditional thought in lattice Boltzmann scheme,on the basis of the equality among the particle speed c, the time step △t and the lattice grid spacing △x held, both c and △t can be adjusted in this scheme according to a "characteristic temperature" instead of the local temperature. The whole algorithm becomes more stable and efficient besides inheriting the intrinsically outstanding strong points of conventional lattice Boltzmann scheme. In this scheme, we also take into account different molecular weights of species, so it is more suitable for simulating actual low Mach number reactive flows than previous work. In this paper, we simulated a so-called "counter-flow" premixed propane-air flame, and the results got by our scheme are much better than that obtained by NCLB. And the more important thing is that the exploration in this work has offered a kind of brand-new train of thought for building other novel lattice Boltzmann scheme in the future.

  9. Maximally aligned states in sup 9 sup 9 Ag

    CERN Document Server

    Sohler, D; Bednarczyk, P; Blomqvist, J M; Cederkäll, J; De Angelis, G; De Poli, M; Dombrádi, Z; Fahlander, C; Foltescu, D; Grawe, H; Huijnen, J; Jerrestam, D; Johnson, A; Juutinen, S; Klamra, W; Kownacki, J P; Kérek, A; Likar, A; Lipoglavsek, M; Maekelae, E; Norlin, L O; Nyberg, J; Palacz, M; Persson, J; Roth, H A; Seweryniak, D; Shizuma, T; Skeppstedt, Ö; Sletten, G; Timar, J; Toermaenen, S; Weiszflog, M

    2003-01-01

    Excited states of sup 9 sup 9 Ag were populated via the sup 5 sup 0 Cr+ sup 5 sup 8 Ni (261 MeV) reaction using the NORDBALL detector array equipped with charged-particle and neutron detector systems for reaction channel separation. On the basis of the measured gamma gamma-coincidence relations and angular distribution ratios a significantly extended level scheme has been constructed up to E sub x propor to 7.8 MeV and I=35/2. The experimental results were described within the framework of the shell model. Candidates for states fully aligned in the pi g sub 9 sub / sub 2 sup - sup 3 nu(d sub 5 sub / sub 2 , g sub 7 sub / sub 2) sup 2 valence configuration space were found at 4109 and 6265 keV. (orig.)

  10. Accelerated large-scale multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Lloyd Scott

    2011-12-01

    Full Text Available Abstract Background Multiple sequence alignment (MSA is a fundamental analysis method used in bioinformatics and many comparative genomic applications. Prior MSA acceleration attempts with reconfigurable computing have only addressed the first stage of progressive alignment and consequently exhibit performance limitations according to Amdahl's Law. This work is the first known to accelerate the third stage of progressive alignment on reconfigurable hardware. Results We reduce subgroups of aligned sequences into discrete profiles before they are pairwise aligned on the accelerator. Using an FPGA accelerator, an overall speedup of up to 150 has been demonstrated on a large data set when compared to a 2.4 GHz Core2 processor. Conclusions Our parallel algorithm and architecture accelerates large-scale MSA with reconfigurable computing and allows researchers to solve the larger problems that confront biologists today. Program source is available from http://dna.cs.byu.edu/msa/.

  11. Bokeh Mirror Alignment for Cherenkov Telescopes

    CERN Document Server

    Ahnen, M L; Balbo, M; Bergmann, M; Biland, A; Blank, M; Bretz, T; Bruegge, K A; Buss, J; Domke, M; Dorner, D; Einecke, S; Hempfling, C; Hildebrand, D; Hughes, G; Lustermann, W; Mannheim, K; Mueller, S A; Neise, D; Neronov, A; Noethe, M; Overkemping, A -K; Paravac, A; Pauss, F; Rhode, W; Shukla, A; Temme, F; Thaele, J; Toscano, S; Vogler, P; Walter, R; Wilbert, A

    2016-01-01

    Imaging Atmospheric Cherenkov Telescopes (IACTs) need imaging optics with large apertures and high image intensities to map the faint Cherenkov light emitted from cosmic ray air showers onto their image sensors. Segmented reflectors fulfill these needs, and composed from mass production mirror facets they are inexpensive and lightweight. However, as the overall image is a superposition of the individual facet images, alignment remains a challenge. Here we present a simple, yet extendable method, to align a segmented reflector using its Bokeh. Bokeh alignment does not need a star or good weather nights but can be done even during daytime. Bokeh alignment optimizes the facet orientations by comparing the segmented reflectors Bokeh to a predefined template. The optimal Bokeh template is highly constricted by the reflector's aperture and is easy accessible. The Bokeh is observed using the out of focus image of a near by point like light source in a distance of about 10 focal lengths. We introduce Bokeh alignment ...

  12. Operational performance of the Antares alignment system

    International Nuclear Information System (INIS)

    A review of the operational performance of the alignment system for the large Antares optical system is presented. The alignment of twenty-four optical channels consisting of two hundred optical elements is verified and established as required prior to each target shot for this CO2 laser fusion test facility. The overall system design included features such as automatic operation, data base driven controls, self calibration, provisions for initial optical alignment set up, and system aided fault location. The system approach employed two alignment stations which sequentially viewed the 24 optical channels (sectors) and could be used for prealignments and calibrations. Closed-loop operations via the computer permit rapid mirror alignments. The performance of the applied techniques and devices is evaluated and compared to the required performance specifically from the standpoint of accuracy and shot rate. Overall system performance with verification by actual target shots is presented

  13. Semiautomatic beam-based LHC collimator alignment

    CERN Document Server

    Valentino, Gianluca; Bruce, Roderik; Wollmann, Daniel; Sammut, Nicholas; Rossi, Adriana; Redaelli, Stefano

    2012-01-01

    Full beam-based alignment of the LHC collimation system was a time-consuming procedure (up to 28 hours) as the collimators were set up manually. A yearly alignment campaign has been sufficient for now, although in the future due to tighter tolerances this may lead to a decrease in the cleaning efficiency if machine parameters such as the beam orbit drift over time. Automating the collimator setup procedure can reduce the beam time for collimator setup and allow for more frequent alignments, therefore reducing the risk of performance degradation. This article describes the design and testing of a semiautomatic algorithm as a first step towards a fully automatic setup procedure. The parameters used to measure the accuracy and performance of the alignment are defined and determined from experimental data. A comparison of these measured parameters at 450 GeV and 3.5 TeV with manual and semiautomatic alignment is provided.

  14. Interference Alignment: From Degrees-of-Freedom to Constant-Gap Capacity Approximations

    CERN Document Server

    Niesen, Urs

    2011-01-01

    Interference alignment is a key technique for communication scenarios with multiple interfering links. In several such scenarios, interference alignment was used to characterize the degrees-of-freedom of the channel. However, these degrees-of-freedom capacity approximations are often too weak to make accurate predictions about the behavior of channel capacity at finite signal-to-noise ratios (SNRs). The aim of this paper is to significantly strengthen these results by showing that interference alignment can be used to characterize capacity to within a constant gap. We focus on real time-invariant frequency-flat X-channels. The only known solutions achieving the degrees-of-freedom of this channel are either based on real interference alignment or on layer-selection schemes. Neither of these solutions seems sufficient for a constant-gap capacity approximation. In this paper, we propose a new communication scheme and show that it achieves the capacity of the Gaussian X-channel to within a constant gap. To aid in...

  15. Array tomography: semiautomated image alignment.

    Science.gov (United States)

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. Successful array tomography requires that the captured images be properly stacked and aligned, and the software to achieve these ends is freely available. This protocol describes the construction of volumetric image stacks from images of fluorescently labeled arrays for three-dimensional image visualization, analysis, and archiving. PMID:21041400

  16. Electric Field Effects on Fiber Alignment Using an Auxiliary Electrode During Electrospinning

    Science.gov (United States)

    Carnell, Lisa S.; Siochi, Emilie J.; Wincheski, Russell A.; Holloway, Nancy M.; Clark, Robert L.

    2009-01-01

    Control of electrospun fiber placement and distribution was investigated by examining the effect of electric field parameters on the electrospinning of fibers. The experimental set-up used in this study eliminated the bending instability and whipping, allowing the jet to be modeled as a stable trajectory. Coupling of experimental and computational results suggests the potential for predicting aligned fiber distribution in electrospun mats.

  17. R3D Align: global pairwise alignment of RNA 3D structures using local superpositions

    Science.gov (United States)

    Rahrig, Ryan R.; Leontis, Neocles B.; Zirbel, Craig L.

    2010-01-01

    Motivation: Comparing 3D structures of homologous RNA molecules yields information about sequence and structural variability. To compare large RNA 3D structures, accurate automatic comparison tools are needed. In this article, we introduce a new algorithm and web server to align large homologous RNA structures nucleotide by nucleotide using local superpositions that accommodate the flexibility of RNA molecules. Local alignments are merged to form a global alignment by employing a maximum clique algorithm on a specially defined graph that we call the ‘local alignment’ graph. Results: The algorithm is implemented in a program suite and web server called ‘R3D Align’. The R3D Align alignment of homologous 3D structures of 5S, 16S and 23S rRNA was compared to a high-quality hand alignment. A full comparison of the 16S alignment with the other state-of-the-art methods is also provided. The R3D Align program suite includes new diagnostic tools for the structural evaluation of RNA alignments. The R3D Align alignments were compared to those produced by other programs and were found to be the most accurate, in comparison with a high quality hand-crafted alignment and in conjunction with a series of other diagnostics presented. The number of aligned base pairs as well as measures of geometric similarity are used to evaluate the accuracy of the alignments. Availability: R3D Align is freely available through a web server http://rna.bgsu.edu/R3DAlign. The MATLAB source code of the program suite is also freely available for download at that location. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: r-rahrig@onu.edu PMID:20929913

  18. Higher Loop Corrections to the Infrared Evolution of Fermionic Gauge Theories in the minimal MOM Scheme

    CERN Document Server

    Ryttov, Thomas A

    2013-01-01

    We continue and expand the investigations initiated in \\cite{Ryttov:2013hka} and study the evolution of the gauge coupling and the anomalous dimension of the mass towards an infrared fixed point for non-supersymmetric gauge theories. This is done in the minimal momentum subtraction, mMOM, scheme at the three loop level where all the renormalization group functions have been calculated explicitly. The purpose is to assess the scheme dependence of earlier and similar investigations performed at the four loop level in the modified minimal subtraction, $\\overline{\\text{MS}}$, scheme and at the three loop level in the modified regularization invariant, RI', scheme. Scheme dependence is found to be very mild when compared to the $\\overline{\\text{MS}}$ scheme while results are of the same order when compared to the RI' scheme.

  19. Tracing magnetic fields with aligned grains

    Energy Technology Data Exchange (ETDEWEB)

    Lazarian, A. [Astronomy Department, University of Wisconsin-Madison, 475 N. Charter St., Madison, WI 53706 (United States)]. E-mail: lazarian@astro.wisc.edu

    2007-07-15

    Magnetic fields play a crucial role in various astrophysical processes, including star formation, accretion of matter, transport processes (e.g., transport of heat), and cosmic rays. One of the easiest ways to determine the magnetic field direction is via polarization of radiation resulting from extinction or/and emission by aligned dust grains. Reliability of interpretation of the polarization maps in terms of magnetic fields depends on how well we understand the grain-alignment theory. Explaining what makes grains aligned has been one of the big issues of the modern astronomy. Numerous exciting physical effects have been discovered in the course of research undertaken in this field. As both the theory and observations matured, it became clear that the grain-alignment phenomenon is inherent not only in diffuse interstellar medium or molecular clouds but also is a generic property of the dust in circumstellar regions, interplanetary space and cometary comae. Currently the grain-alignment theory is a predictive one, and its results nicely match observations. Among its predictions is a subtle phenomenon of radiative torques. This phenomenon, after having stayed in oblivion for many years after its discovery, is currently viewed as the most powerful means of alignment. In this article, I shall review the basic physical processes involved in grain alignment, and the currently known mechanisms of alignment. I shall also discuss possible niches for different alignment mechanisms. I shall dwell on the importance of the concept of grain helicity for understanding of many properties of grain alignment, and shall demonstrate that rather arbitrarily shaped grains exhibit helicity when they interact with gaseous and radiative flows.

  20. Good governance for pension schemes

    CERN Document Server

    Thornton, Paul

    2011-01-01

    Regulatory and market developments have transformed the way in which UK private sector pension schemes operate. This has increased demands on trustees and advisors and the trusteeship governance model must evolve in order to remain fit for purpose. This volume brings together leading practitioners to provide an overview of what today constitutes good governance for pension schemes, from both a legal and a practical perspective. It provides the reader with an appreciation of the distinctive characteristics of UK occupational pension schemes, how they sit within the capital markets and their social and fiduciary responsibilities. Providing a holistic analysis of pension risk, both from the trustee and the corporate perspective, the essays cover the crucial role of the employer covenant, financing and investment risk, developments in longevity risk hedging and insurance de-risking, and best practice scheme administration.

  1. A Novel Iris Segmentation Scheme

    Directory of Open Access Journals (Sweden)

    Chen-Chung Liu

    2014-01-01

    Full Text Available One of the key steps in the iris recognition system is the accurate iris segmentation from its surrounding noises including pupil, sclera, eyelashes, and eyebrows of a captured eye-image. This paper presents a novel iris segmentation scheme which utilizes the orientation matching transform to outline the outer and inner iris boundaries initially. It then employs Delogne-Kåsa circle fitting (instead of the traditional Hough transform to further eliminate the outlier points to extract a more precise iris area from an eye-image. In the extracted iris region, the proposed scheme further utilizes the differences in the intensity and positional characteristics of the iris, eyelid, and eyelashes to detect and delete these noises. The scheme is then applied on iris image database, UBIRIS.v1. The experimental results show that the presented scheme provides a more effective and efficient iris segmentation than other conventional methods.

  2. Field-aligned ICRF antenna design for EAST

    Science.gov (United States)

    Wukitch, S. J.; Lin, Y.; Qin, C.; Zhang, X.; Beck, W.; Koert, P.; Zhou, L.

    2015-12-01

    For ion cyclotron range of frequency (ICRF), a number of physics and technological challenges remain for steady state, toroidal devices. Among the most critical is maintaining good coupling and maximizing the coupled power through plasma variations including edge localized modes (ELMs) and confinement transitions. As pulse length increases, enhanced localized heat loads associated with antenna operation can challenge antenna integrity. In addition, ICRF impurity sources and contamination need to be minimized to enable effective plasma heating. Here, we report on a four strap field aligned (FA) antenna design for the EAST tokamak. A FA antenna is an antenna where the current straps and antenna side enclosure are perpendicular to the total magnetic field while the Faraday screen rods are parallel to the total magnetic field. In C-Mod, a FA antenna has been shown to be inherently load tolerant which allows for robust power delivery to the plasma. Furthermore, the RF enhanced heat flux and antenna impurity source were nearly eliminated. For both L and H-mode discharges, the core impurity contamination is 20-30% lower but not eliminated. The emerging physics understanding is that the local RF impurity sources and RF enhanced heat flux is reduced due to the geometric alignment of the FA antenna while impurity contamination is a result of far field sheaths. An important aspect of antenna design is to identify a core absorption scenario that is characterized by strong single pass absorption for a broad range of target discharges. To maximize power coupling, the antenna spectrum needs to balance the k|| needed for strong single pass absorption and high coupling efficiency through evanescent layer. The latest design for a FA four strap adapted to EAST device is balance between geometrical constraints and physics requirements.

  3. Breeding schemes in reindeer husbandry

    Directory of Open Access Journals (Sweden)

    Lars Rönnegård

    2003-04-01

    Full Text Available The objective of the paper was to investigate annual genetic gain from selection (G, and the influence of selection on the inbreeding effective population size (Ne, for different possible breeding schemes within a reindeer herding district. The breeding schemes were analysed for different proportions of the population within a herding district included in the selection programme. Two different breeding schemes were analysed: an open nucleus scheme where males mix and mate between owner flocks, and a closed nucleus scheme where the males in non-selected owner flocks are culled to maximise G in the whole population. The theory of expected long-term genetic contributions was used and maternal effects were included in the analyses. Realistic parameter values were used for the population, modelled with 5000 reindeer in the population and a sex ratio of 14 adult females per male. The standard deviation of calf weights was 4.1 kg. Four different situations were explored and the results showed: 1. When the population was randomly culled, Ne equalled 2400. 2. When the whole population was selected on calf weights, Ne equalled 1700 and the total annual genetic gain (direct + maternal in calf weight was 0.42 kg. 3. For the open nucleus scheme, G increased monotonically from 0 to 0.42 kg as the proportion of the population included in the selection programme increased from 0 to 1.0, and Ne decreased correspondingly from 2400 to 1700. 4. In the closed nucleus scheme the lowest value of Ne was 1300. For a given proportion of the population included in the selection programme, the difference in G between a closed nucleus scheme and an open one was up to 0.13 kg. We conclude that for mass selection based on calf weights in herding districts with 2000 animals or more, there are no risks of inbreeding effects caused by selection.

  4. An arbitrated quantum signature scheme

    CERN Document Server

    Zeng, G; Zeng, Guihua; Keitel, Christoph H.

    2002-01-01

    The general principle for a quantum signature scheme is proposed and investigated based on ideas from classical signature schemes and quantum cryptography. The suggested algorithm is implemented by a symmetrical quantum key cryptosystem and Greenberger-Horne-Zeilinger (GHZ) triplet states and relies on the availability of an arbitrator. We can guarantee the unconditional security of the algorithm, mostly due to the correlation of the GHZ triplet states and the use of quantum one-time pads.

  5. PDF fit in the fixed-flavour-number scheme

    Energy Technology Data Exchange (ETDEWEB)

    Alekhin, S. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany); Institute for High Energy Physics, Moscow (Russian Federation); Bluemlein, J.; Moch, S. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany)

    2012-02-15

    We discuss the heavy-quark contribution to deep inelastic scattering in the scheme with n{sub f}=3;4;5 fixed flavors. Based on the recent ABM11 PDF analysis of world data for deep-inelastic scattering and fixed-target data for the Drell-Yan process with the running-mass definition for heavy quarks we show that fixed flavor number scheme is sufficient for describing the deep-inelastic-scattering data in the entire kinematic range. We compare with other PDF sets and comment on the implications for measuring the strong coupling constant {alpha}{sub s}(M{sub Z}).

  6. Feedback control of flow alignment in sheared liquid crystals

    Science.gov (United States)

    Strehober, David A.; Schöll, Eckehard; Klapp, Sabine H. L.

    2013-12-01

    Based on a continuum theory, we investigate the manipulation of the nonequilibrium behavior of a sheared liquid crystal via closed-loop feedback control. Our goal is to stabilize a specific dynamical state, that is, the stationary "flow alignment," under conditions where the uncontrolled system displays oscillatory director dynamics with in-plane symmetry. To this end we employ time-delayed feedback control (TDFC), where the equation of motion for the ith component qi(t) of the order parameter tensor is supplemented by a control term involving the difference qi(t)-qi(t-τ). In this diagonal scheme, τ is the delay time. We demonstrate that the TDFC method successfully stabilizes flow alignment for suitable values of the control strength K and τ; these values are determined by solving an exact eigenvalue equation. Moreover, our results show that only small values of K are needed when the system is sheared from an isotropic equilibrium state, contrary to the case where the equilibrium state is nematic.

  7. Multiscale Point Correspondence Using Feature Distribution and Frequency Domain Alignment

    Directory of Open Access Journals (Sweden)

    Zeng-Shun Zhao

    2012-01-01

    Full Text Available In this paper, a hybrid scheme is proposed to find the reliable point-correspondences between two images, which combines the distribution of invariant spatial feature description and frequency domain alignment based on two-stage coarse to fine refinement strategy. Firstly, the source and the target images are both down-sampled by the image pyramid algorithm in a hierarchical multi-scale way. The Fourier-Mellin transform is applied to obtain the transformation parameters at the coarse level between the image pairs; then, the parameters can serve as the initial coarse guess, to guide the following feature matching step at the original scale, where the correspondences are restricted in a search window determined by the deformation between the reference image and the current image; Finally, a novel matching strategy is developed to reject the false matches by validating geometrical relationships between candidate matching points. By doing so, the alignment parameters are refined, which is more accurate and more flexible than a robust fitting technique. This in return can provide a more accurate result for feature correspondence. Experiments on real and synthetic image-pairs show that our approach provides satisfactory feature matching performance.

  8. Multiple deep convolutional neural networks averaging for face alignment

    Science.gov (United States)

    Zhang, Shaohua; Yang, Hua; Yin, Zhouping

    2015-05-01

    Face alignment is critical for face recognition, and the deep learning-based method shows promise for solving such issues, given that competitive results are achieved on benchmarks with additional benefits, such as dispensing with handcrafted features and initial shape. However, most existing deep learning-based approaches are complicated and quite time-consuming during training. We propose a compact face alignment method for fast training without decreasing its accuracy. Rectified linear unit is employed, which allows all networks approximately five times faster convergence than a tanh neuron. An eight learnable layer deep convolutional neural network (DCNN) based on local response normalization and a padding convolutional layer (PCL) is designed to provide reliable initial values during prediction. A model combination scheme is presented to further reduce errors, while showing that only two network architectures and hyperparameter selection procedures are required in our approach. A three-level cascaded system is ultimately built based on the DCNNs and model combination mode. Extensive experiments validate the effectiveness of our method and demonstrate comparable accuracy with state-of-the-art methods on BioID, labeled face parts in the wild, and Helen datasets.

  9. Alignment-Insensitive Lower-Cost Telescope Architecture

    Science.gov (United States)

    Feinberg, Lee; Hagopian, John; Dean, Bruce; Howard, Joe

    2008-01-01

    This architecture features an active wavefront sensing and control scheme along with methods for measuring the relative positions of the primary to aft optics, such as the secondary mirror, and should enable larger and cheaper telescope architectures needed for future applications. A wavefront source/sensor is placed at the center of curvature of the primary mirror. The system provides continuous light onto a primary mirror that is retro-reflected onto itself. This allows the wavefront controller to constantly update the positions of the primary mirror segments (or deformable mirror actuators). Another function of this innovation involves using a concave mirror on the back of the secondary mirror (or other aft optic) that has the same center-of-curvature location (in defocus) as the primary mirror. The two return beams can be aligned next to each other on a detector, or radially on top of each other. This provides a means with which to measure the relative position of the primary to the secondary (or other aft optics), thus allowing for the removal of misalignment of the center-of-curvature source/sensor (meaning it doesn't need precision placement) and also provides a means with which to monitor the relative alignment over time. This innovation does not require extremely good thermal stability on the primary mirror and can thus be used in any thermal environment and with cheaper materials. In addition to this, the architecture lets one phase (or align) the primary mirror independent of whether a star or scene is in the field. The segmented, spherical primary allows for cost-effective three-meter class (e.g. Midex and Discovery) missions as well as enabling 30-meter telescope solutions that can be manufactured in a reasonable amount of time. The continuous wavefront sensing and control architecture enables missions for low-Earth-orbit.

  10. Polyimide photo-alignment layers for inclined homeotropic alignment of liquid crystal molecules

    International Nuclear Information System (INIS)

    We have succeeded in realizing an inclined homeotropic alignment of liquid crystal (LC) molecules by using photo-aligned films of a polyimide containing azobenzene in the backbone structure. To induce such an LC alignment, a side chain structure was introduced into the backbone structure. The LC pretilt angle, measured from the surface normal, could be controlled up to 1.75o by varying the light exposure in oblique angle irradiation with unpolarized light. Its thermal stability was examined by annealing the LC cell at 100 deg. C. No change was observed in the pretilt angle even after annealing for 36 h, indicative of its excellent thermal stability. Since photo-alignment has patterning capability, the photo-aligned polyimide film is expected as a promising alignment film for multi-domain vertical alignment mode LC displays

  11. Synchronization in nonlinear oscillators with conjugate coupling

    OpenAIRE

    Han, Wenchen; Zhang, Mei; Yang, Junzhong

    2014-01-01

    In this work, we investigate the synchronization in oscillators with conjugate coupling in which oscillators interact via dissimilar variables. The synchronous dynamics and its stability are investigated theoretically and numerically. We ?nd that the synchronous dynamics and its stability are dependent on both coupling scheme and the coupling constant. We also ?nd that the synchronization may be independent of the number of oscillators. Numerical demonstrations with Lorenz oscillators are pro...

  12. Face Alignment via Regressing Local Binary Features.

    Science.gov (United States)

    Ren, Shaoqing; Cao, Xudong; Wei, Yichen; Sun, Jian

    2016-03-01

    This paper presents a highly efficient and accurate regression approach for face alignment. Our approach has two novel components: 1) a set of local binary features and 2) a locality principle for learning those features. The locality principle guides us to learn a set of highly discriminative local binary features for each facial landmark independently. The obtained local binary features are used to jointly learn a linear regression for the final output. This approach achieves the state-of-the-art results when tested on the most challenging benchmarks to date. Furthermore, because extracting and regressing local binary features are computationally very cheap, our system is much faster than previous methods. It achieves over 3000 frames per second (FPS) on a desktop or 300 FPS on a mobile phone for locating a few dozens of landmarks. We also study a key issue that is important but has received little attention in the previous research, which is the face detector used to initialize alignment. We investigate several face detectors and perform quantitative evaluation on how they affect alignment accuracy. We find that an alignment friendly detector can further greatly boost the accuracy of our alignment method, reducing the error up to 16% relatively. To facilitate practical usage of face detection/alignment methods, we also propose a convenient metric to measure how good a detector is for alignment initialization.

  13. Galaxy alignment on large and small scales

    CERN Document Server

    Kang, X; Wang, Y O; Dutton, A; Macciò, A

    2014-01-01

    Galaxies are not randomly distributed across the universe but showing different kinds of alignment on different scales. On small scales satellite galaxies have a tendency to distribute along the major axis of the central galaxy, with dependence on galaxy properties that both red satellites and centrals have stronger alignment than their blue counterparts. On large scales, it is found that the major axes of Luminous Red Galaxies (LRGs) have correlation up to 30Mpc/h. Using hydro-dynamical simulation with star formation, we investigate the origin of galaxy alignment on different scales. It is found that most red satellite galaxies stay in the inner region of dark matter halo inside which the shape of central galaxy is well aligned with the dark matter distribution. Red centrals have stronger alignment than blue ones as they live in massive haloes and the central galaxy-halo alignment increases with halo mass. On large scales, the alignment of LRGs is also from the galaxy-halo shape correlation, but with some ex...

  14. Efficient Password-Typed Key Agreement Scheme

    CERN Document Server

    Aboud, Sattar J

    2010-01-01

    In this paper, we will study Lee, Kim and Yoo, a verifier password typed key agreement scheme and demonstrate that the scheme is not secure. Then, the authors will propose an enhanced verifier typed key agreement scheme relied on Lee, Kim and Yoo scheme and demonstrate that the propose scheme resists against password guessing attack and stolen verifier attack. The authors are claimed that the proposed scheme is more secure and efficient compare with Lee, Kim and Yoo.

  15. Robust scheme for implemention of quantum phase gates for two atoms

    Institute of Scientific and Technical Information of China (English)

    Zheng Shi-Biao

    2009-01-01

    We propose a scheme for implementing conditional quantum phase gates for two four-state atoms trapped in a cavity.The two ground states of the atoms are coupled through two Raman processes induced by the cavity mode and two classical fields.Under certain conditions nonresonant Raman processes lead to two-atom coupling and can be used to produce conditional phase gates.The scheme is insensitive to cavity decay,thermal photons,and atomic spontaneous emission.The scheme does not require individual addressing of the atoms.

  16. An image encryption scheme based on the MLNCML system using DNA sequences

    Science.gov (United States)

    Zhang, Ying-Qian; Wang, Xing-Yuan; Liu, Jia; Chi, Ze-Lin

    2016-07-01

    We propose a new image scheme based on the spatiotemporal chaos of the Mixed Linear-Nonlinear Coupled Map Lattices (MLNCML). This spatiotemporal chaotic system has more cryptographic features in dynamics than the system of Coupled Map Lattices (CML). In the proposed scheme, we employ the strategy of DNA computing and one time pad encryption policy, which can enhance the sensitivity to the plaintext and resist differential attack, brute-force attack, statistical attack and plaintext attack. Simulation results and theoretical analysis indicate that the proposed scheme has superior high security.

  17. Hexagonal Pixels and Indexing Scheme for Binary Images

    Science.gov (United States)

    Johnson, Gordon G.

    2004-01-01

    A scheme for resampling binaryimage data from a rectangular grid to a regular hexagonal grid and an associated tree-structured pixel-indexing scheme keyed to the level of resolution have been devised. This scheme could be utilized in conjunction with appropriate image-data-processing algorithms to enable automated retrieval and/or recognition of images. For some purposes, this scheme is superior to a prior scheme that relies on rectangular pixels: one example of such a purpose is recognition of fingerprints, which can be approximated more closely by use of line segments along hexagonal axes than by line segments along rectangular axes. This scheme could also be combined with algorithms for query-image-based retrieval of images via the Internet. A binary image on a rectangular grid is generated by raster scanning or by sampling on a stationary grid of rectangular pixels. In either case, each pixel (each cell in the rectangular grid) is denoted as either bright or dark, depending on whether the light level in the pixel is above or below a prescribed threshold. The binary data on such an image are stored in a matrix form that lends itself readily to searches of line segments aligned with either or both of the perpendicular coordinate axes. The first step in resampling onto a regular hexagonal grid is to make the resolution of the hexagonal grid fine enough to capture all the binaryimage detail from the rectangular grid. In practice, this amounts to choosing a hexagonal-cell width equal to or less than a third of the rectangular- cell width. Once the data have been resampled onto the hexagonal grid, the image can readily be checked for line segments aligned with the hexagonal coordinate axes, which typically lie at angles of 30deg, 90deg, and 150deg with respect to say, the horizontal rectangular coordinate axis. Optionally, one can then rotate the rectangular image by 90deg, then again sample onto the hexagonal grid and check for line segments at angles of 0deg, 60deg

  18. Rotational Alignment Altered by Source Position Correlations

    Science.gov (United States)

    Jacobs, Chris S.; Heflin, M. B.; Lanyi, G. E.; Sovers, O. J.; Steppe, J. A.

    2010-01-01

    In the construction of modern Celestial Reference Frames (CRFs) the overall rotational alignment is only weakly constrained by the data. Therefore, common practice has been to apply a 3-dimensional No-Net-Rotation (NNR) constraint in order to align an under-construction frame to the ICRF. We present evidence that correlations amongst source position parameters must be accounted for in order to properly align a CRF at the 5-10 (mu)as level of uncertainty found in current work. Failure to do so creates errors at the 10-40 (mu)as level.

  19. Utilizing Time Redundancy for Particle Filter-Based Transfer Alignment

    Science.gov (United States)

    Chattaraj, Suvendu; Mukherjee, Abhik

    2016-07-01

    Signal detection in the presence of high noise is a challenge in natural sciences. From understanding signals emanating out of deep space probes to signals in protein interactions for systems biology, domain specific innovations are needed. The present work is in the domain of transfer alignment (TA), which deals with estimation of the misalignment of deliverable daughter munitions with respect to that of the delivering mother platform. In this domain, the design of noise filtering scheme has to consider a time varying and nonlinear system dynamics at play. The accuracy of conventional particle filter formulation suffers due to deviations from modeled system dynamics. An evolutionary particle filter can overcome this problem by evolving multiple system models through few support points per particle. However, this variant has even higher time complexity for real-time execution. As a result, measurement update gets deferred and the estimation accuracy is compromised. By running these filter algorithms on multiple processors, the execution time can be reduced, to allow frequent measurement updates. Such scheme ensures better system identification so that performance improves in case of simultaneous ejection of multiple daughters and also results in better convergence of TA algorithms for single daughter.

  20. Review of alignment activities for indus-1 and 2 at CAT

    International Nuclear Information System (INIS)

    Survey and alignment activities at CAT (Centre for Advanced Technology - India) are related to two accelerator projects called INDUS-1 and INDUS -2. Former is a 450 MeV SRS and latter is a 2.5 GeV SRS. Both the machines use a 450/700 MeV booster synchrotron and 20 MeV pre-injector microtron for injection. Indus-1 was commissioned with 100 mA stored beam current in May 1999. Indus-2 is under construction and expected to be commissioned within next 4 years. Survey and alignment work of booster synchrotron and Indus-1 (storage ring) was accomplished using optical surveying techniques with software ECDS-2 of Kern. That was possible due to small size of machines of Indus-1. For Indus-2 with circumference of 172.47 m, the network surveying and alignment scheme has been planned. Indus-2 is a high brilliance machine and this puts more stringent requirements on alignment. This paper describes methodology and performance results of Indus-1 alignment and strategy for Indus-2. (authors)

  1. UNIFIED COMPUTATION OF FLOW WITH COMPRESSIBLE AND INCOMPRESSIBLE FLUID BASED ON ROE'S SCHEME

    Institute of Scientific and Technical Information of China (English)

    HUANG Dian-gui

    2006-01-01

    A unified numerical scheme for the solutions of the compressible and incompressible Navier-Stokes equations is investigated based on a time-derivative preconditioning algorithm. The primitive variables are pressure, velocities and temperature. The time integration scheme is used in conjunction with a finite volume discretization. The preconditioning is coupled with a high order implicit upwind scheme based on the definition of a Roe's type matrix. Computational capabilities are demonstrated through computations of high Mach number, middle Mach number, very low Mach number, and incompressible flow. It has also been demonstrated that the discontinuous surface in flow field can be captured for the implementation Roe's scheme.

  2. Aligned Fibrous Scaffold Induced Aligned Growth of Corneal Stroma Cells in vitro Culture

    Institute of Scientific and Technical Information of China (English)

    GAO Yan; YAN Jing; CUI Xue-jun; WANG Hong-yan; WANG Qing

    2012-01-01

    To investigate the contribution of fibre arrangement to guiding the aligned growth of corneal stroma cells,aligned and randomly oriented fibrous scaffolds of gelatin and poly-L-lactic acid(PLLA) were fabricated by electrospinning.A comparative study of two different systems with corneal stroma cells on randomly organized and aligned fibres were conducted.The efficiency of the scaffolds for inducing the aligned growth of cells was assessed by morphological observation and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide(MTT) assay.Results show that the cells cultured on both randomly oriented and aligned scaffolds maintained normal morphology and well spreading as well as long term proliferation.Importantly,corneal stroma cells grew high orderly on the aligned scaffold,while the cells grew disordered on the randomly oriented scaffold.Moreover,the cells exhibited higher viability in aligned scaffold than that in randomly oriented scaffold.These results indcate that electrospinng to prepare aligned fibrous scaffolds has provided an effective approach to the aligned growth of corneal stroma cells in vitro.Our findings that fiber arrangement plays a crucial role in guiding the aligned growth of cells may be helpful to the development of better biomaterials for tissue engineered cornea.

  3. Multiuser switched diversity scheduling schemes

    KAUST Repository

    Shaqfeh, Mohammad

    2012-09-01

    Multiuser switched-diversity scheduling schemes were recently proposed in order to overcome the heavy feedback requirements of conventional opportunistic scheduling schemes by applying a threshold-based, distributed, and ordered scheduling mechanism. The main idea behind these schemes is that slight reduction in the prospected multiuser diversity gains is an acceptable trade-off for great savings in terms of required channel-state-information feedback messages. In this work, we characterize the achievable rate region of multiuser switched diversity systems and compare it with the rate region of full feedback multiuser diversity systems. We propose also a novel proportional fair multiuser switched-based scheduling scheme and we demonstrate that it can be optimized using a practical and distributed method to obtain the feedback thresholds. We finally demonstrate by numerical examples that switched-diversity scheduling schemes operate within 0.3 bits/sec/Hz from the ultimate network capacity of full feedback systems in Rayleigh fading conditions. © 2012 IEEE.

  4. Nonlinear secret image sharing scheme.

    Science.gov (United States)

    Shin, Sang-Ho; Lee, Gil-Je; Yoo, Kee-Young

    2014-01-01

    Over the past decade, most of secret image sharing schemes have been proposed by using Shamir's technique. It is based on a linear combination polynomial arithmetic. Although Shamir's technique based secret image sharing schemes are efficient and scalable for various environments, there exists a security threat such as Tompa-Woll attack. Renvall and Ding proposed a new secret sharing technique based on nonlinear combination polynomial arithmetic in order to solve this threat. It is hard to apply to the secret image sharing. In this paper, we propose a (t, n)-threshold nonlinear secret image sharing scheme with steganography concept. In order to achieve a suitable and secure secret image sharing scheme, we adapt a modified LSB embedding technique with XOR Boolean algebra operation, define a new variable m, and change a range of prime p in sharing procedure. In order to evaluate efficiency and security of proposed scheme, we use the embedding capacity and PSNR. As a result of it, average value of PSNR and embedding capacity are 44.78 (dB) and 1.74t⌈log2 m⌉ bit-per-pixel (bpp), respectively.

  5. Energy partitioning schemes: a dilemma.

    Science.gov (United States)

    Mayer, I

    2007-01-01

    Two closely related energy partitioning schemes, in which the total energy is presented as a sum of atomic and diatomic contributions by using the "atomic decomposition of identity", are compared on the example of N,N-dimethylformamide, a simple but chemically rich molecule. Both schemes account for different intramolecular interactions, for instance they identify the weak C-H...O intramolecular interactions, but give completely different numbers. (The energy decomposition scheme based on the virial theorem is also considered.) The comparison of the two schemes resulted in a dilemma which is especially striking when these schemes are applied for molecules distorted from their equilibrium structures: one either gets numbers which are "on the chemical scale" and have quite appealing values at the equilibrium molecular geometries, but exhibiting a counter-intuitive distance dependence (the two-center energy components increase in absolute value with the increase of the interatomic distances)--or numbers with too large absolute values but "correct" distance behaviour. The problem is connected with the quick decay of the diatomic kinetic energy components. PMID:17328441

  6. Energy partitioning schemes: a dilemma.

    Science.gov (United States)

    Mayer, I

    2007-01-01

    Two closely related energy partitioning schemes, in which the total energy is presented as a sum of atomic and diatomic contributions by using the "atomic decomposition of identity", are compared on the example of N,N-dimethylformamide, a simple but chemically rich molecule. Both schemes account for different intramolecular interactions, for instance they identify the weak C-H...O intramolecular interactions, but give completely different numbers. (The energy decomposition scheme based on the virial theorem is also considered.) The comparison of the two schemes resulted in a dilemma which is especially striking when these schemes are applied for molecules distorted from their equilibrium structures: one either gets numbers which are "on the chemical scale" and have quite appealing values at the equilibrium molecular geometries, but exhibiting a counter-intuitive distance dependence (the two-center energy components increase in absolute value with the increase of the interatomic distances)--or numbers with too large absolute values but "correct" distance behaviour. The problem is connected with the quick decay of the diatomic kinetic energy components.

  7. Nonlinear secret image sharing scheme.

    Science.gov (United States)

    Shin, Sang-Ho; Lee, Gil-Je; Yoo, Kee-Young

    2014-01-01

    Over the past decade, most of secret image sharing schemes have been proposed by using Shamir's technique. It is based on a linear combination polynomial arithmetic. Although Shamir's technique based secret image sharing schemes are efficient and scalable for various environments, there exists a security threat such as Tompa-Woll attack. Renvall and Ding proposed a new secret sharing technique based on nonlinear combination polynomial arithmetic in order to solve this threat. It is hard to apply to the secret image sharing. In this paper, we propose a (t, n)-threshold nonlinear secret image sharing scheme with steganography concept. In order to achieve a suitable and secure secret image sharing scheme, we adapt a modified LSB embedding technique with XOR Boolean algebra operation, define a new variable m, and change a range of prime p in sharing procedure. In order to evaluate efficiency and security of proposed scheme, we use the embedding capacity and PSNR. As a result of it, average value of PSNR and embedding capacity are 44.78 (dB) and 1.74t⌈log2 m⌉ bit-per-pixel (bpp), respectively. PMID:25140334

  8. Flavour alignment in physics beyond the standard model

    Energy Technology Data Exchange (ETDEWEB)

    Braeuninger, Carolin Barbara

    2012-11-21

    There are numerous reasons to think that the Standard Model of physics is not the ultimate theory of nature on very small scales. However, attempts to construct theories that go beyond the Standard Model generically lead to high rates of flavour changing neutral processes that are in conflict with experiment: Quarks are the fundamental constituents of protons and neutrons. Together with electrons they form the visible matter of the universe1. They come in three generations or ''flavours''. In interactions, quarks of different generations can mix, i.e. a quark of one flavour can transform into a quark of another flavour. In the Standard Model, at first order in perturbation theory, such processes occur only via the exchange of a charged particle. Flavour changing neutral processes can only arise in processes involving loops of charged particles. This is due to the fact that all couplings of two quarks to a neutral particle are diagonal in the basis of the mass eigenstates of the quarks. There is thus no mixing of quarks of different flavour at first order. Since the loop processes are suppressed by a loop factor, the Standard Model predicts very low rates for neutral processes that change the flavour of quarks. So far, this is in agreement with experiment. In extensions of the Standard Model, new couplings to the quarks are usually introduced. In general there is no reason why the new coupling matrices should be diagonal in the mass basis of the quarks. These models therefore predict high rates for processes that mix quarks of different flavour. Extensions of the Standard Model must therefore have a non-trivial flavour structure. A possibility to avoid flavour violation is to assume that the new couplings are aligned with the mass matrices of the quarks, i.e. diagonal in the same basis. This alignment could be due to a flavour symmetry. In this thesis, two extensions of the Standard Model with alignment are studied. The first is a simple

  9. Generic GPCR residue numbers - aligning topology maps while minding the gaps

    DEFF Research Database (Denmark)

    Isberg, Vignir; de Graaf, Chris; Bortolato, Andrea;

    2015-01-01

    Generic residue numbers facilitate comparisons of, for example, mutational effects, ligand interactions, and structural motifs. The numbering scheme by Ballesteros and Weinstein for residues within the class A GPCRs (G protein-coupled receptors) has more than 1100 citations, and the recent crystal...... by pharmacologists, chemists, and structural biologists. We review the generic residue numbering schemes for each GPCR class, as well as a complementary structure-based scheme, and provide illustrative examples and GPCR database (GPCRDB) web tools to number any receptor sequence or structure....

  10. Robust and Efficient Parametric Face Alignment

    NARCIS (Netherlands)

    Tzimiropoulos, Georgios; Zafeiriou, Stefanos; Pantic, Maja

    2011-01-01

    We propose a correlation-based approach to parametric object alignment particularly suitable for face analysis applications which require efficiency and robustness against occlusions and illumination changes. Our algorithm registers two images by iteratively maximizing their correlation coefficient

  11. Alignment of the NOMAD-STAR detector

    CERN Document Server

    Cervera-Villanueva, A

    2000-01-01

    This note describes the alignment of the NOMAD-STAR detector. This is the B/sub 4/C-silicon target installed in the NOMAD spectrometer in 1997. NOMAD-STAR is composed of modules of 12 silicon detectors each giving a total length of 72 cm. Ten of these modules (called ladders) are assembled to form a layer. There are five layers interleaved with passive boron carbide plates. The total surface of silicon is 1.14 m /sup 2/. Energetic muons from the flat-top of the CERN SPS cycle provide the necessary information to perform a very precise software alignment. This alignment is needed to ensure that the impact parameter measurement needed for the identification of taus in a detector like NOMAD-STAR will not be limited by the error in the alignment. (15 refs).

  12. Aligner for Elastic Collisions of Dropped Balls.

    Science.gov (United States)

    Mellen, Walter Roy

    1995-01-01

    Discusses an aligner that permits dropping a stack of any number of balls of different sizes, elasticities, hardnesses, or types to observe the rebound of the top ball. Experimental results allow a reasonable comparison with theory. (MVL)

  13. Alignment free characterization of 2D gratings

    CERN Document Server

    Madsen, Morten Hannibal; Hansen, Poul-Erik; Jørgensen, Jan Friis

    2015-01-01

    Fast characterization of 2-dimensional gratings is demonstrated using a Fourier lens optical system and a differential optimization algorithm. It is shown that both the grating specific parameters such as the basis vectors and the angle between them and the alignment of the sample, such as the rotation of the sample around the x-, y-, and z-axis, can be deduced from a single measurement. More specifically, the lattice vectors and the angle between them have been measured, while the corrections of the alignment parameters are used to improve the quality of the measurement, and hence reduce the measurement uncertainty. Alignment free characterization is demonstrated on both a 2D hexagonal grating with a period of 700 nm and a checkerboard grating with a pitch of 3000 nm. The method can also be used for both automatic alignment and in-line characterization of gratings.

  14. Precision alignment of permanent magnet drift tubes

    International Nuclear Information System (INIS)

    The Lawrence Berkeley National Laboratory (LBNL) technique of drift-tube alignment has been resurrected at Los Alamos for the precision alignment of 1-cm-core drift tubes that carry high gradient rare-earth-cobalt quadrupoles. Because the quadrupoles cannot be switched off, this technique is not applicable to a drift-tube assembly, but tests indicate that individual magnetic centers can be detected with a precision of +/-0.003 mm. Methods of transferring this information to machined alignment flats on the sides of the drift-tube body are discussed. With measurements of drift tubes designed for a 100-mA, 425-MHz drift-tube linac, offsets between the geometric and magnetic axes of up to +/-0.05 mm were detected following final assembly and welding. This degree of offset is serious if not accommodated, because it represents the entire alignment tolerance for the 40-cell tank. The measurement equipment and technique are described

  15. Faster exon assembly by sparse spliced alignment

    CERN Document Server

    Tiskin, Alexander

    2007-01-01

    Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is \\emph{spliced alignment}, proposed by Gelfand et al., which scores different candidate exon chains within a DNA sequence of length $m$ by comparing them to a known related gene sequence of length n, $m = \\Theta(n)$. Gelfand et al.\\ gave an algorithm for spliced alignment running in time O(n^3). Kent et al.\\ considered sparse spliced alignment, where the number of candidate exons is O(n), and proposed an algorithm for this problem running in time O(n^{2.5}). We improve on this result, by proposing an algorithm for sparse spliced alignment running in time O(n^{2.25}). Our approach is based on a new framework of \\emph{quasi-local string comparison}.

  16. Robust and resistant 2D shape alignment

    DEFF Research Database (Denmark)

    Larsen, Rasmus; Eiriksson, Hrafnkell

    2001-01-01

    We express the alignment of 2D shapes as the minimization of the norm of a linear vector function. The minimization is done in the \\$l\\_1\\$, \\$l\\_2\\$ and the \\$l\\_\\$\\backslash\\$infty\\$ norms using well known standard numerical methods. In particular, the \\$l\\_1\\$ and the \\$l\\_\\$\\backslash\\$infty\\......We express the alignment of 2D shapes as the minimization of the norm of a linear vector function. The minimization is done in the \\$l\\_1\\$, \\$l\\_2\\$ and the \\$l\\_\\$\\backslash\\$infty\\$ norms using well known standard numerical methods. In particular, the \\$l\\_1\\$ and the \\$l......\\_\\$\\backslash\\$infty\\$ norm alignments are formulated as linear programming problems. The linear vector function formulation along with the different norms results in alignment methods that are both resistant from influence from outliers, robust wrt. errors in the annotation and capable of handling missing datapoints...

  17. EURRECA—Framework for Aligning Micronutrient Recommendations

    NARCIS (Netherlands)

    Veer, van 't P.; Grammatikaki, E.; Matthys, C.; Raats, M.M.; Contor, L.

    2013-01-01

    There is currently no standard approach for deriving micronutrient recommendations, and large variations exist across Europe, causing confusion among consumers, food producers, and policy makers. More aligned information could influence dietary behaviors and potentially lead to a healthier populatio

  18. A Trigger and Readout Scheme for future Cherenkov Telescope Arrays

    CERN Document Server

    Hermann, G; Foehr, C; Hofmann, W; Kihm, T; Köck, F

    2008-01-01

    The next generation of ground-based gamma-ray observatories, such as e.g. CTA, will consist of about 50-100 telescopes, and cameras with in total ~100000 to ~200000 channels. The telescopes of the core array will cover and effective area of ~ 1 km2 and will be possibly accompanied by a large halo of smaller telescopes spread over about 10 km2 . In order to make maximum use of the stereoscopic approach, a very flexible inter-telescope trigger scheme is needed which allows to couple telescopes that located up to ~1 km apart. The development of a cost effective readout scheme for the camera signals exhibits a major technological challenge. Here we present ideas on a new asynchronous inter-telescope trigger scheme, and a very cost-effective, high-bandwidth frontend to backend data transfer system, both based on standard Ethernet components and an Ethernet front-end interface based on mass production standard FPGAs.

  19. Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV [v1; ref status: indexed, http://f1000r.es/4io

    Directory of Open Access Journals (Sweden)

    Andrew C. R. Martin

    2014-10-01

    Full Text Available The JavaScript Sequence Alignment Viewer (JSAV is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.

  20. Molecular focusing and alignment with plasmon fields.

    Science.gov (United States)

    Artamonov, Maxim; Seideman, Tamar

    2010-12-01

    We show the possibility of simultaneously aligning molecules and focusing their center-of-mass motion near a metal nanoparticle in the field intensity gradient created by the surface plasmon enhancement of incident light. The rotational motion is described quantum mechanically while the translation is treated classically. The effects of the nanoparticle shape on the alignment and focusing are explored. Our results carry interesting implications to the field of molecular nanoplasmonics and suggest several potential applications in nanochemistry.